Paradigm shift of contamination risk of six heavy metals in tea (Camellia sinensis L.) growing soil: A new approach influenced by inorganic and organic amendments.

PubMed

Karak, Tanmoy; Bora, Krishnamoni; Paul, Ranjit Kumar; Das, Sampa; Khare, Puja; Dutta, Amrit Kumar; Boruah, Romesh Kumar

2017-09-15

The present study provides several contamination and ecological risk indices for selected metals (Cd, Cr, Cu, Mn, Ni and Zn) in tea (Camellia sinensis L.; cv. S.3A/3) growing soil influenced by lower to higher doses of inorganic and organic amendments. While ecological risk indices were applied, it was observed that same treatment showed different risk levels but contamination risk status did not vary significantly. All the indices showed significant correlation with heavy metals' concentration in young shoots of tea plants. As the indices characterized experimental soils with different extents of contamination, it would be important to standardize the indices with long term experiments followed by generation of new index. Therefore, we formulated a new contamination index named as Tea Research Association Heavy Metal Contamination Index (TRAHMCI) for tea growing soils. TRAHMCI is based on the probable change of metal status in soil with progress of growth of tea plant. This could be useful to negate discrepancies arised from use of various existing metal contamination indices in tea growing soils amended with different doses of fertilizers. TRAHMCI was formulated based on individual contamination factor using statistical technique and applied to the present dataset which provided a more holistic understanding of overall tea growing soil behavior. The limitation of the developed TRAHMCI index is that, the index had not been validated for other crops in our study not to claim its effective use for crops other than tea. As already mentioned, this new index had been formulated by taking tea as the test crop with above mentioned six heavy metal contents in young shoot and made tea. Copyright © 2017 Elsevier B.V. All rights reserved.

[Effects of biochar and sheep manure on rhizospheric soil microbial community in continuous ratooning tea orchards].

PubMed

Li, Yan Chun; Li, Zhao Wei; Lin, Wei Wei; Jiang, Yu Hang; Weng, Bo Qi; Lin, Wen Xiong

2018-04-01

Long-term continuous ratooning of tea could lead to serious soil acidification, nutritional imbalance, and the deterioration of the rhizosphere micro-ecological environment. Understanding the effects of biochar and sheep manure on the growth of tea plants and the rhizosphere microbial community structure and function would provide theoretical basis to improve the soil micro-ecological environment of continuous ratooning tea orchards. Biolog technology combined with phospholipid fatty acid (PLFA) approaches were employed to quantify the effects of biochar (40 t·hm -2 ) and sheep manure on the growth of 20 years continuous ratooning tea plants, soil chemical properties, and the soil microbial community structure and function. The results showed that after one year treatment, biochar and sheep manure both improved soil pH and nutrition, and significantly enhanced tea production. Compared with the routine fertilizer application (CK), the biochar and sheep manure treatments significantly increased the carbon metabolic activity (AWCD) and microorganism diversity in the rhizosphere soils, and increased the relative utilization of the carbon sources such as amines, carbohydrates, and polymers. The total PLFA concentrations in the biochar and sheep manure treatments were significantly increased by 20.9% and 47.5% than that in the routine fertilizers application. In addition, sheep manure treatment significantly decreased the saturated/monosaturated fatty acids In conclusion, biochar and sheep manure could alleviate soil acidification, enhance soil nutrition and the growth of tea plants. Both management strategies could increase the soil microbial activity and biomass, enhance the diversity, and improve the microbial community structure, which could be taken as effective measures to regulate the rhizosphere micro-environment of tea plants.

[Determination of lambda-cyhalothrin residue tea and soil using gas chromatography].

PubMed

Chen, Linglong; Chen, Jiuxing; Ma, Ming; Chen, Lihua; Yang, Hui; Zhang, Guiqun

2010-08-01

A gas chromatographic (GC) method was established for the determination of lambda-cyhalothrin residue in tea and soil. Tea and soil samples were extracted with hexane, separated by capillary column and determined by gas chromatography-electron capture detector (GC-ECD). The average recoveries of lambda-cyhalothrin in tea and soil were 89.0% - 94.1% and 89.8% - 94.7%, respectively at the spiking levels of 0.02 to 2.00 mg/kg. The corresponding relative standard deviations (RSDs, n = 5) were 3.0% -4.9% and 2.5% -4.2%, respectively. The limit of detection (S/N = 3) was 0.002 mg/kg for lambda-cyhalothrin. The degradations of 2.5% lambda-cyhalothrin microemulsion in tea and soil in Changsha, Hunan were investigated and the degradation equations were Y = 3.199 6e(-0.339 4x) and Y = 0.122 4e(-0.103 6x) with the correlation coefficients of 0.995 6 and 0.924 7, respectively. The half-lives of lambda-cyhalothrin in tea and soil were 2.04 days and 6.69 days, respectively.

Anion Channel Inhibitor NPPB-Inhibited Fluoride Accumulation in Tea Plant (Camellia sinensis) Is Related to the Regulation of Ca2+, CaM and Depolarization of Plasma Membrane Potential

PubMed Central

Zhang, Xian-Chen; Gao, Hong-Jian; Yang, Tian-Yuan; Wu, Hong-Hong; Wang, Yu-Mei; Zhang, Zheng-Zhu; Wan, Xiao-Chun

2016-01-01

Tea plant is known to be a hyper-accumulator of fluoride (F). Over-intake of F has been shown to have adverse effects on human health, e.g., dental fluorosis. Thus, understanding the mechanisms fluoride accumulation and developing potential approaches to decrease F uptake in tea plants might be beneficial for human health. In the present study, we found that pretreatment with the anion channel inhibitor NPPB reduced F accumulation in tea plants. Simultaneously, we observed that NPPB triggered Ca2+ efflux from mature zone of tea root and significantly increased relative CaM in tea roots. Besides, pretreatment with the Ca2+ chelator (EGTA) and CaM antagonists (CPZ and TFP) suppressed NPPB-elevated cytosolic Ca2+ fluorescence intensity and CaM concentration in tea roots, respectively. Interestingly, NPPB-inhibited F accumulation was found to be significantly alleviated in tea plants pretreated with either Ca2+ chelator (EGTA) or CaM antagonists (CPZ and TFP). In addition, NPPB significantly depolarized membrane potential transiently and we argue that the net Ca2+ and H+ efflux across the plasma membrane contributed to the restoration of membrane potential. Overall, our results suggest that regulation of Ca2+-CaM and plasma membrane potential depolarization are involved in NPPB-inhibited F accumulation in tea plants. PMID:26742036

Effect of green tea catechin, a local drug delivery system as an adjunct to scaling and root planing in chronic periodontitis patients: A clinicomicrobiological study

PubMed Central

Kudva, Praveen; Tabasum, Syeda Tawkhira; Shekhawat, Nirmal Kanwar

2011-01-01

Background: Evaluate the adjunctive use of locally delivered green tea catechin with scaling and root planing, as compared to scaling and root planing alone in the management of chronic periodontitis. Materials and Methods: Fourteen patients with two sites in the contralateral quadrants with probing pocket depth of 5–8mm were selected. Each of the sites was assessed for the plaque index, gingival index, and probing pocket depth at baseline and 21 days and for microbiological analysis at baseline, 1 week and 21 days. Test sites received scaling and root planing along with green tea catechin strips and control sites received scaling and root planning alone. Results: The result showed intercomparison of the plaque index and gingival index for test and control groups at 21 days was not significant with P>0.05, whereas the probing depth at 21 days was significant with P<0.001. Intercomparison between microbial results demonstrated a considerable reduction of occurrence of Aggregatibacter actinomycetemcomitans, Prevotella intermedia, Fusobacterium species and Capnocytophaga in test. Conclusion: Green tea catechin local delivery along with scaling and root planing is more effective than scaling and root planing alone. PMID:21772720

Heavy metal content in tea soils and their distribution in different parts of tea plants, Camellia sinensis (L). O. Kuntze.

PubMed

Seenivasan, Subbiah; Anderson, Todd Alan; Muraleedharan, Narayanannair

2016-07-01

Soils contaminated with heavy metals may pose a threat to environment and human health if metals enter the food chain over and above threshold levels. In general, there is a lack of information on the presence of heavy metals in tea [Camellia sinensis (L). O. Kuntze] plants and the soils in which they are grown. Therefore, an attempt was made to establish a database on the important heavy metals: cadmium (Cd), chromium (Cr), nickel (Ni), and lead (Pb). For an initial survey on heavy metals, soil samples were collected randomly from tea-growing areas of Tamil Nadu, Kerala, and Karnataka, India. Parallel studies were conducted in the greenhouse on uptake of Pb, Cd, and Ni from soils supplemented with these metals at different concentrations. Finally, metal distribution in the tea plants under field conditions was also documented to assess the accumulation potential and critical limit of uptake by plants.

Simultaneous and enantioselective determination of cis-epoxiconazole and indoxacarb residues in various teas, tea infusion and soil samples by chiral high performance liquid chromatography coupled with tandem quadrupole-time-of-flight mass spectrometry.

PubMed

Zhang, Xinzhong; Luo, Fengjian; Lou, Zhengyun; Lu, Meiling; Chen, Zongmao

2014-09-12

A novel and sensitive method for simultaneous enantiomeric analysis of two pesticides-cis-epoxiconazole and indoxacarb-in various teas, black tea infusion, and soil samples has been developed. The samples were initially subjected to acetonitrile extraction followed by cleanup using lab-made florisil/graphitized carbon black mixed solid phase extraction (SPE) column (for the different teas and soil samples) and a BondElut C18-SPE column (for the black tea infusion samples). Separation of the analytes was performed on a chiral stationary phase using high performance liquid chromatography (HPLC) under a reversed-phase isocratic elution mode followed by tandem quadrupole time-of-flight mass spectrometry (Q-TOF/MS) detection. The mobile phase components, mobile phase ratios, flow rates, column temperatures, and MS parameters were all optimized to reach high sensitivity and selectivity, good peak shape, and satisfactory resolution. The performance of the method was evaluated based on the sensitivity, linearity, accuracy, precision, and matrix effects. Under optimal conditions, for the various teas (green tea, black tea, and puer tea), fresh tea leaf, soil and black tea infusion samples spiked at low, medium, and high levels, the mean recoveries for the four enantiomers ranged from 61.0% to 129.7% with most relative standard deviations (RSDs) being 17.1% or below. Good linearity can be achieved with regression coefficients (R) of 0.9915 or above for all target enantiomers, and matrix-matched calibration concentration ranging from 5.0 to 1000μg/L. The limits of detection (LODs) for all four target enantiomers were 1.4μg/kg or below in the different teas and soil samples and 0.05μg/kg or below in the black tea infusion, whereas the limits of quantification (LOQs) for those did not exceed 5.0μg/kg and 0.2μg/L, respectively. The proposed method is convenient and reliable and has been applied to real tea samples screening. It has also been extended for studies on the degradation kinetics and environmental behaviors in the field trials, providing additional information for reliable risk assessment of these chiral pesticides. Copyright © 2014 Elsevier B.V. All rights reserved.

Effects of Mulching on Soil Properties and Growth of Tea Olive (Osmanthus fragrans).

PubMed

Ni, Xue; Song, Weiting; Zhang, Huanchao; Yang, Xiulian; Wang, Lianggui

2016-01-01

Different mulches have variable effects on soil physical properties and plant growth. This study aimed to compare the effects of mulching with inorganic (round gravel, RG), organic (wood chips, WC), and living (manila turf grass, MG) materials on soil properties at 0-5-cm and 5-10-cm depths, as well as on the growth and physiological features of Osmanthus fragrans L. 'Rixianggui' plants. Soil samples were collected at three different time points from field plots of O. fragrans plants treated with the different mulching treatments. Moisture at both soil depths was significantly higher after mulching with RG and WC than that in the unmulched control (CK) treatment. Mulching did not affect soil bulk density, pH, or total nitrogen content, but consistently improved soil organic matter. The available nitrogen in the soil increased after RG and WC treatments, but decreased after MG treatment during the experimental period. Mulching improved plant growth by increasing root activity, soluble sugar, and chlorophyll a content, as well as by providing suitable moisture conditions and nutrients in the root zone. Plant height and trunk diameter were remarkably increased after mulching, especially with RG and WC. However, while MG improved plant growth at the beginning of the treatment, the 'Rixianggui' plants later showed no improvement in growth. This was probably because MG competed with the plants for water and available nitrogen in the soil. Thus, our findings suggest that RG and WC, but not MG, improved the soil environment and the growth of 'Rixianggui' plants. Considering the effect of mulching on soil properties and plant growth and physiology, round gravel and wood chips appear to be a better choice than manila turf grass in 'Rixianggui' nurseries. Further studies are required to determine the effects of mulch quality and mulch-layer thickness on shoot and root growths.

Root reinforcement and its contribution to slope stability in the Western Ghats of Kerala, India

NASA Astrophysics Data System (ADS)

Lukose Kuriakose, Sekhar; van Beek, L. P. H.

2010-05-01

The Western Ghats of Kerala, India is prone to shallow landslides and consequent debris flows. An earlier study (Kuriakose et al., DOI:10.1002/esp.1794) with limited data had already demonstrated the possible effects of vegetation on slope hydrology and stability. Spatially distributed root cohesion is one of the most important data necessary to assess the effects of anthropogenic disturbances on the probability of shallow landslide initiation, results of which are reported in sessions GM6.1 and HS13.13/NH3.16. Thus it is necessary to the know the upper limits of reinforcement that the roots are able to provide and its spatial and vertical distribution in such an anthropogenically intervened terrain. Root tensile strength and root pull out tests were conducted on nine species of plants that are commonly found in the region. They are 1) Rubber (Hevea Brasiliensis), 2) Coconut Palm (Cocos nucifera), 3) Jackfruit trees (Artocarpus heterophyllus), 4) Teak (Tectona grandis), 5) Mango trees (Mangifera indica), 6) Lemon grass (Cymbopogon citratus), 7) Gambooge (Garcinia gummi-gutta), 8) Coffee (Coffea Arabica) and 9) Tea (Camellia sinensis). About 1500 samples were collected of which only 380 could be tested (in the laboratory) due to breakage of roots during the tests. In the successful tests roots failed in tension. Roots having diameters between 2 mm and 12 mm were tested. Each sample tested had a length of 15 cm. Root pull out tests were conducted in the field. Root tensile strength vs root diameter, root pull out strength vs diameter, root diameter vs root depth and root count vs root depth relationships were derived. Root cohesion was computed for nine most dominant plants in the region using the perpendicular root model of Wu et al. (1979) modified by Schimidt et al. (2001). A soil depth map was derived using regression kriging as suggested by Kuriakose et al., (doi:10.1016/j.catena.2009.05.005) and used along with the land use map of 2008 to distribute the computed root tensile strength both vertically and spatially. Root cohesion varies significantly with the type of land use and the depth of soil. The computation showed that a maximum root reinforcement of 40 kPa was available in the first 30 cm of soil while exponentially decreased with depth to just about 3 kPa at 3 m depth. Mixed crops land use unit had the maximum root cohesion while fallow land, degraded forest and young rubber plantation had the lowest root reinforcement. These are the upper limits of root reinforcement that the vegetation can provide. When the soil is saturated, the bond between soil and roots reduces and thus the applicable root reinforcement is limited by the root pullout strength. Root reinforcement estimated from pullout strength vs diameter relationships was significantly lower than those estimated from tensile strength vs diameter relationships.

Microbiological community analysis of vermicompost tea and its influence on the growth of vegetables and cereals.

PubMed

Fritz, J I; Franke-Whittle, I H; Haindl, S; Insam, H; Braun, R

2012-07-01

Vermicompost, the digestion product of organic material by earthworms, has been widely reported to have a more positive effect on plant growth and plant health than conventional compost. A study was conducted to investigate the effects of different vermicompost elutriates (aerated compost teas) on soils and plant growth. The teas were analyzed by chemical, microbiological, and molecular methods accompanied by plant growth tests at laboratory and field scale. The number of microorganisms in the teas increased during the extraction process and was affected by substrate addition. The vermicompost tea found to increase plant growth best under laboratory tests was applied to cereals (wheat and barley) and vegetables (Raphanus sativus, Rucola selvatica, and Pisum sativum) in a field study. The results revealed no effects of tea application on plant yield; however, sensoric tests indicated an improvement in crop quality. The soils from laboratory and field studies were investigated to detect possible microbial or chemical changes. The results indicated that minor changes to the soil microbial community occurred following tea application by foliar spray in both the laboratory-scale and field-scale experiments.

Migration and Accumulation of Octachlorodipropyl Ether in Soil-Tea Systems in Young and Old Tea Gardens.

PubMed

Liao, Min; Shi, Yan-Hong; Cao, Hai-Qun; Fang, Qing-Kui; Xiao, Jin-Jing; Hua, Ri-Mao

2017-09-08

The migration and accumulation of octachlorodipropyl ether (OCDPE) in soil-tea systems were investigated using a gas chromatography-electron capture detector (GC-ECD) method in young and old tea gardens. When the residual concentration of OCDPE was 100 g a.i. hm -2 in soils, the peak concentrations of OCDPE in fresh leaves of young and old tea plants were 0.365 mg/kg and 0.144 mg/kg, taking 45 days and 55 days, respectively. Equations for the accumulation curves of OCDPE in fresh leaves of young and old tea plants were C t = 0.0227e 0.0566t (R² = 0.9154) and C t = 0.0298e -0.0306t (R² = 0.7156), and were C t = 3.8435e 0.055t (R² = 0.9698) and C t = 1.5627e -0.048t (R² = 0.9634) for dissipation curves, with a half-life of 14.4 days and 12.6 days, respectively. These results have practical guiding significance for controlling tea food safety.

Comparing Effects of Forestland conversion to Tea Farming on Soil Quality Indices

NASA Astrophysics Data System (ADS)

Gholoubi, A.; Emami, H.; Alizadeh, A.; Jones, S. B.

2017-12-01

The effect of land use type on soil function within an ecosystem can be assessed and monitored using soil quality indices. The research examined effects of land use change from natural forest to tea farming (with the same physiography and parent materials) on soil properties in different regions of the Guilan province, northern Iran. Two universally-accepted methods of soil quality evaluation were used to understand soil conditions in these two land uses. Thirty-six soil samples (0 -30 cm) were randomly collected from six sites with 3 replications. The soil quality of forestland and tea farms was determined using the cumulative rating (CR) index and the Cornell Comprehensive Assessment of Soil Health (CASH) scoring functions. Effects of Land use change on soil quality or health were significant (P <0.01) using both methods. In the CR method, a relative weighting factor (RWF) from 1 to 5 was assigned each key soil property. The results of both methods for all regions showed that the forestland use was more sustainable (lower CR and higher CASH score) than tea farm soils. forestland use affected most soil properties and thus their scores in both evaluation methods. Soil organic carbon and pH were the most important indicators reduced by land use change at all locations. There were significant correlations between these indicators and other soil chemical, physical and biological factors affected by changing forestland use.

Yield and quality responses of citrus (Citrus reticulate) and tea (Podocarpus fleuryi Hickel.) to compound fertilizers*

PubMed Central

Wang, Rui; Shi, Xue-gen; Wei, You-zhang; Yang, Xiao-e; Uoti, Juhani

2006-01-01

Experiments were carried out with citrus (Citrus reticulate) and tea (Podocarpus fleuryi Hickel.) to study the effects of compound fertilizers on their yields and quality. In the citrus experiment, application of compound fertilizers increased available P, K and Mg contents in soil but decreased alkali-hydrolyzable N contents in soil and N, P and K contents in leaves. In the tea experiment, application of compound fertilizers increased available P, K and Mg contents in soil and N, P, K and Mg contents in leaves but decreased alkali-hydrolyzable N in soil compared with the urea treatment. Application of compound fertilizers could improve the quality of citrus and tea, increase their yields and enhance their economical profits significantly. Compared with the control, application of compound fertilizers increased citrus yields by 6.31, 12.94 and 17.69 t/ha, and those of tea by 0.51, 0.86 and 1.30 t/ha, respectively. Correspondingly, profits were increased by 21.4% to 61.1% for citrus and by 10.0% to 15.7% for tea. Optimal rates of compound fertilizers were recommended for both crops. PMID:16909469

[Development of cough-relieving herbal teas].

PubMed

Puodziūniene, Gene; Janulis, Valdimaras; Milasius, Arvydas; Budnikas, Vytautas

2005-01-01

Cough-relieving medicinal herbs in tea are used from ancient times. Mucilage present in them or secretion produced under the influence of the active substances covers the oral and throat mucosa soothing its irritability and relieving dry, tiresome cough. It is known that the mixtures of medicinal herbs (Specias) have a complex influence on the human organism and the rational combination of medicinal herbs can improve their curative action and decrease the undesirable side effects. Having summarized the properties of those medicinal herbs we decided to create two formulations of cough-relieving herbal tea. The first formulation consists of marshmallow roots, liquorice roots and lime flowers, the second -- of marshmallow roots, Iceland moss and lime flowers. The methods for identification and assay of the active substances in the compounds were applied. The purity of the mixtures was regulated by limitation of the loss on drying, total ash, microbial contamination, contamination with radionuclides, heavy metals, pesticides and foreign matter. The expiry date of both cough-relieving herbal teas was approved to be 2 years.

Further investigation of the biosynthesis of caffeine in tea plants (Camellia sinensis L.). Methylation of transfer ribonucleic acid by tea leaf extracts.

PubMed Central

Suzuki, T; Takahashi, E

1976-01-01

1. The tRNA methyltransferase activity in vitro of leaves, cotyledons and roots of 85-day-old tea seedlings was studied. 2. The activity of extracts prepared from tea leaves with Polycar AT (insoluble polyvinylpyrrolidine) had optimum pH7.7 and was greatly influenced by thiol compounds, but only slightly by metal ions and ammonium acetate. 3. The activities of extracts, expressed per mg of protein, were as follows: roots greater than leaves greater than cotyledons. The only methylated base isolated after incubation with these preparations was 1-methyladenine. 4. The results did not support the view of involvement of methylation of nucleic acids in caffeine biosynthesis in tea plants. In contrast, it is suggested that theophylline is synthesized from the specific methylated precursor in nucleic acids, namely 1-methyladenylic acid, via 1-methylxanthine. PMID:12749

Linear Regression between CIE-Lab Color Parameters and Organic Matter in Soils of Tea Plantations

NASA Astrophysics Data System (ADS)

Chen, Yonggen; Zhang, Min; Fan, Dongmei; Fan, Kai; Wang, Xiaochang

2018-02-01

To quantify the relationship between the soil organic matter and color parameters using the CIE-Lab system, 62 soil samples (0-10 cm, Ferralic Acrisols) from tea plantations were collected from southern China. After air-drying and sieving, numerical color information and reflectance spectra of soil samples were measured under laboratory conditions using an UltraScan VIS (HunterLab) spectrophotometer equipped with CIE-Lab color models. We found that soil total organic carbon (TOC) and nitrogen (TN) contents were negatively correlated with the L* value (lightness) ( r = -0.84 and -0.80, respectively), a* value (correlation coefficient r = -0.51 and -0.46, respectively) and b* value ( r = -0.76 and -0.70, respectively). There were also linear regressions between TOC and TN contents with the L* value and b* value. Results showed that color parameters from a spectrophotometer equipped with CIE-Lab color models can predict TOC contents well for soils in tea plantations. The linear regression model between color values and soil organic carbon contents showed it can be used as a rapid, cost-effective method to evaluate content of soil organic matter in Chinese tea plantations.

The contribution of cell wall composition in the expansion of Camellia sinensis seedlings roots in response to aluminum.

PubMed

Safari, Masoumeh; Ghanati, Faezeh; Safarnejad, Mohammad Reza; Chashmi, Najmeh Ahmadian

2018-02-01

Treatment with aluminum triggers a unique response in tea seedlings resulting in biochemical modification of the cell wall, regulation of the activity of the loosening agents, and elongation of root. Unlike most terrestrial plants, tea (Camellia sinensis L.) responds to aluminum (Al) through the promotion of its root elongation; but the real mechanism(s) behind this phenomenon is not well understood. A plausible relationship between the modifications of the cell wall and the promotion of root elongation was examined in tea seedlings treated for 8 days with 400 µM Al. The mechanical properties of the cell wall, the composition of its polysaccharides and their capacity to absorb Al, the expression of genes, and the activities of the wall-modifying proteins were studied. With 6 h of the treatment, about 40% of the absorbed Al was bound to the cell wall; however, the amount did not increase thereafter. Meanwhile, the activity of pectin methylesterase, the level of pectin demethylation, the amounts and the average molecular mass of xyloglucan in the root apices significantly decreased upon exposure to Al, resulting in the reduction of Al binding sites. On the other hand, the activity and the gene expression of peroxidase decreased, whereas the activity and gene expression of xyloglucan-degrading enzymes, the expression of expansin A and the H + -ATPase4 genes increased in the Al-treated plants. Interestingly, it was accompanied by the increase of elastic and viscous extensibility of the root apices. From the results, it can be suggested that the biochemical modification of the cell walls reduces sites of Al binding to roots and triggers the activity of the loosening agents, thereby increasing the length of tea roots.

[Species diversity and temporal niche of entomopathogenic fungi in the extensively managed tea plantation soil].

PubMed

Guo, Xian-Jian; Shen, Wan-Fang; Liu, Yu-Jun; Chen, Ming-Jun

2014-11-01

The species diversity and temporal niche of entomopathogenic fungi community in the rhizosphere soil collected from the extensively managed Huangshan fuzz tip tea plantation were investigated. A total of 140 soil samples were collected at the location of Tangkou Town, Huangshan of Anhui Province during August, 2012 to June, 2013, and totally 1041 fungal isolates were obtained on selective medium with soil dilution plating. The results showed that the entomopathogenic fungi community in the tea plantation soil was diverse with 13 species in 6 genera. Purpureocillium lilacinum (309 strains), Beauveria bassiana (255 strains), and Metarhizium anisopliae (101 strains) were the dominant species accounting for 29.7%, 24.5% and 9.7% of the relative frequency, respectively. P. lilacinum had the widest temporal niche breadth among these dominant entomopathogenic fungi from the tea plantation soil, while B. bassiana had the narrowest. Among the entomopathogenic fungi, B. bassiana and B. brongniartii had the biggest temporal niche overlap of 1.965, while Isaria javanicus and B. bassiana had the smallest of 0.374.

Critical factors determining fluoride concentration in tea leaves produced from Anhui province, China.

PubMed

Cai, Huimei; Zhu, Xiaohui; Peng, Chuanyi; Xu, Wei; Li, Daxiang; Wang, Yijun; Fang, Shihui; Li, Yeyun; Hu, Shaode; Wan, Xiaochun

2016-09-01

This study investigated the fluoride present in tea plants (Camellia sinensis (L.) O. Kuntze) and its relationship to soils, varieties, seasons and tea leaf maturity. The study also explored how different manufacturing processes affect the leaching of fluoride into tea beverages. The fluoride concentration in the tea leaves was significantly correlate to the concentration of water-soluble fluoride in the soil. Different tea varieties accumulated different levels of fluoride, with varieties, Anji baicha having the highest and Nongkang zao having the lowest fluoride concentration. In eight different varieties of tea plant harvested over three tea seasons, fluoride concentration were highest in the summer and lowest in the spring in china. The fluoride concentration in tea leaves was directly related to the maturity of the tea leaves at harvest. Importantly, the tea manufacturing process did not introduced fluoride contamination. The leaching of fluoride was 6.8% and 14.1% higher in black and white tea, respectively, than in fresh tea leaves. The manufacturing step most affecting the leaching of fluoride into tea beverage was withering used in white, black and oolong tea rather than rolling or fermentation. The exposure and associated health risks for fluoride concentration in infusions of 115 commercially available teas from Chinese tea markets was determined. The fluoride concentration ranged from 5.0 to 306.0mgkg(-1), with an average of 81.7mgkg(-1). The hazard quotient (HQ) of these teas indicated that there was no risk of fluorosis from drinking tea, based on statistical analysis by Monte Carlo simulation. Copyright © 2016 Elsevier Inc. All rights reserved.

Soil changes induced by rubber and tea plantation establishment: comparison with tropical rain forest soil in Xishuangbanna, SW China.

PubMed

Li, Hongmei; Ma, Youxin; Liu, Wenjie; Liu, Wenjun

2012-11-01

Over the past thirty years, Xishuangbanna in Southwestern China has seen dramatic changes in land use where large areas of tropical forest and fallow land have been converted to rubber and tea plantations. In this study we evaluated the effects of land use and slope on soil properties in seven common disturbed and undisturbed land-types. Results indicated that all soils were acidic, with pH values significantly higher in the 3- and 28-year-old rubber plantations. The tropical forests had the lowest bulk densities, especially significantly lower from the top 10 cm of soil, and highest soil organic matter concentrations. Soil moisture content at topsoil was highest in the mature rubber plantation. Soils in the tropical forests and abandoned cultivated land had inorganic N (IN) concentrations approximately equal in NH(4) (+)-N and NO(3) (-)-N. However, soil IN pools were dominated by NH(4) (+)-N in the rubber and tea plantations. This trend suggests that conversion of tropical forest to rubber and tea plantations increases NH(4) (+)-N concentration and decreases NO(3) (-)-N concentration, with the most pronounced effect in plantations that are more frequently fertilized. Soil moisture content, IN, NH(4) (+)-N and NO(3) (-)-N concentrations within all sites were higher in the rainy season than in the dry season. Significant differences in the soil moisture content, and IN, NH(4) (+)-N and NO(3) (-)-N concentration was detected for both land uses and sampling season effects, as well as interactions. Higher concentrations of NH(4) (+)-N were measured at the upper slopes of all sites, but NO(3) (-)-N concentrations were highest at the lower slope in the rubber plantations and lowest at the lower slopes at all other. Thus, the conversion of tropical forests to rubber and tea plantations can have a profound effect on soil NH(4) (+)-N and NO(3) (-)-N concentrations. Options for improved soil management in plantations are discussed.

Effect of Medium Supplements on Agrobacterium rhizogenes Mediated Hairy Root Induction from the Callus Tissues of Camellia sinensis var. sinensis.

PubMed

Rana, Mohammad M; Han, Zhuo-Xiao; Song, Da-Peng; Liu, Guo-Feng; Li, Da-Xiang; Wan, Xiao-Chun; Karthikeyan, Alagarsamy; Wei, Shu

2016-07-15

Tea (Camellia sinensis L.) is recalcitrant to Agrobacterium-mediated genetic transformation largely due to the bactericidal effects of tea polyphenols and phenolics oxidation induced by necrosis of explant tissue over the process of transformation. In this study, different antioxidants/adsorbents were added as supplements to the co-cultivation and post co-cultivation media to overcome these problems for the transformation improvement. Tea-cotyledon-derived calli were used as explants and Agrobacterium rhizognes strain ATCC 15834 was used as a mediator. Results showed that Agrobacterium growth, virulence (vir) gene expression and browning of explant tissue were greatly influenced by different supplements. Murashige and Skoog (MS) basal salts medium supplemented with 30 g·L(-1) sucrose, 0.1 g·L(-1) l-glutamine and 5 g·L(-1) polyvinylpolypyrrolidone (PVPP) as co-cultivation and post co-cultivation media could maintain these parameters better that ultimately led to significant improvement of hairy root generation efficiency compared to that in the control (MS + 30 g·L(-1) sucrose). Additionally, the reporter genes β-glucuronidase (gusA) and cyan fluorescent protein (cfp) were also stably expressed in the transgenic hairy roots. Our study would be helpful in establishing a feasible approach for tea biological studies and genetic improvement of tea varieties.

Soil fluoride fractions and their bioavailability to tea plants (Camellia sinensis L.).

PubMed

Yi, Xiaoyun; Qiao, Sha; Ma, Lifeng; Wang, Jie; Ruan, Jianyun

2017-10-01

Drinking teas containing high fluoride (F) imposes fluorosis risk. The soil F bioavailability is an important factor influencing its uptake and contents in teas. The present work was conducted to investigate F fractions in soil and their bioavailability to tea plants. Tea seedlings were cultivated on 6 typical soils treated with a mixture consisting of dolomite, lime, peat and KCl at variable rates in the pot experiment. Soils and young shoots were collected in pairs from 63 sites of 21 plantations in a field experiment. Soil fluoride was sequentially separated into hot water soluble [Formula: see text], exchangeable [Formula: see text] (by 1 mol L -1 MgCl 2 , pH = 7.0), F bound to Mn and Fe hydroxides [F (oxides,s) ], and organic matter [F (OM,s) ] or extracted independently by water [Formula: see text] or 0.01 mol L -1 CaCl 2 solution [Formula: see text]. Averaged [Formula: see text], [Formula: see text], F (oxides,s) and F (OM,s) accounted for 51, 14, 5 and 30 % of the total sequential extracts, respectively. There were significant correlations among [Formula: see text], [Formula: see text] and F (OM,s) . Fluoride contents in leaves correlated with [Formula: see text] (r = 0.71, p < 0.001), [Formula: see text] (r = 0.93, p < 0.001) and F (OM,s) (r = 0.69, p < 0.01) but not other fractions in the pot experiment and with [Formula: see text] (r = 0.43-0.57, p < 0.001) and [Formula: see text] (r = 0.42-0.79, p < 0.001) in the field experiment. It was concluded that 0.01 M CaCl 2 extractable fluoride can be a good indicator of soil F bioavailability to tea plants. The significant correlations among some of the F fractions suggested that F in solution, AlF complexes (AlF 2 + , AlF 2+ ) and those bound to organic matter likely represent the available pools to tea plants.

Acidophilic denitrifiers dominate the N2O production in a 100-year-old tea orchard soil.

PubMed

Huang, Ying; Long, Xi-En; Chapman, Stephen J; Yao, Huaiying

2015-03-01

Aerobic denitrification is the main process for high N2O production in acid tea field soil. However, the biological mechanisms for the high emission are not fully understood. In this study, we examined N2O emission and denitrifier communities in 100-year-old tea soils with four pH levels (3.71, 5.11, 6.19, and 7.41) and four nitrate concentration (0, 50, 200, and 1000 mg kg(-1) of NO3 (-)-N) addition. Results showed the highest N2O emission (10.1 mg kg(-1) over 21 days) from the soil at pH 3.71 with 1000 mg kg(-1) NO3 (-) addition. The N2O reduction and denitrification enzyme activity in the acid soils (pH <7.0) were significantly higher than that of soils at pH 7.41. Moreover, TRF 78 of nirS and TRF 187 of nosZ dominated in soils of pH 3.71, suggesting an important role of acidophilic denitrifiers in N2O production and reduction. CCA analysis also showed a negative correlation between the dominant denitrifier ecotypes (nirS TRF 78, nosZ TRF 187) and soil pH. The representative sequences were identical to those of cultivated denitrifiers from acidic soils via phylogenetic tree analysis. Our results showed that the acidophilic denitrifier adaptation to the acid environment results in high N2O emission in this highly acidic tea soil.

Detection of salts in soil using transversely excited atmospheric (TEA) carbon dioxide (CO2) laser-induced breakdown spectroscopy (LIBS) by the aid of a metal mesh

NASA Astrophysics Data System (ADS)

Idris, N.; Ramli, M.; Khumaeni, A.; Kurihara, K.

2018-04-01

In this work, a nickel metal mesh was used to allow a direct detection of salt in soil sample by LIBS utilizing unique characteristics of a TEA CO2. The metal mesh is placed in the front of the soil sample to prevent the soil sample from blowing off upon focusing the high pulsed laser beam irradiation. LIBS apparatus used in this work is a TEA CO2 laser operated at wavelength of 10.6 μm with pulse energy and duration of 3J and 200 ns, respectively. The laser beam was focused using a ZnSe lens (f = 200 mm) onto soil sample after passing through the metal mesh. The emission spectrum from the induced plasma was detected using an optical multichannel analyzer (OMA) system consisting of a 0.32-m-focal length spectrograph with a grating of 1200 graves/mm and a 1024-channel photodiode detector array with a micro-channel plate intensifier. The soil sample used is a standard soil and ordinary soil containing several salts such as Ca, Mg at high concentration. The LIBS experiment was carried out at high pressure surrounding gas of 1 atmosphere. It was observed that by the aid of the metal mesh, strong breakdown gas plasma can be produced just after TEA CO2 laser irradiation on soil sample without significant sample blowing off. It was found that emission lines from salts, Ca (Ca II 393. 3 nm, Ca II 396.3 nm, Ca I 422.5 nm), and also other salts including Mg and Na can clearly be detected with strong emission intensity and narrow spectral width. This result implies that a TEA CO2 LIBS assisted by the metal mesh (metal mesh method) can be used for direct analysis several salts such as Ca, Mg, and Na in soil sample.

Effect of Medium Supplements on Agrobacterium rhizogenes Mediated Hairy Root Induction from the Callus Tissues of Camellia sinensis var. sinensis

PubMed Central

Rana, Mohammad M.; Han, Zhuo-Xiao; Song, Da-Peng; Liu, Guo-Feng; Li, Da-Xiang; Wan, Xiao-Chun; Karthikeyan, Alagarsamy; Wei, Shu

2016-01-01

Tea (Camellia sinensis L.) is recalcitrant to Agrobacterium-mediated genetic transformation largely due to the bactericidal effects of tea polyphenols and phenolics oxidation induced by necrosis of explant tissue over the process of transformation. In this study, different antioxidants/adsorbents were added as supplements to the co-cultivation and post co-cultivation media to overcome these problems for the transformation improvement. Tea-cotyledon-derived calli were used as explants and Agrobacterium rhizognes strain ATCC 15834 was used as a mediator. Results showed that Agrobacterium growth, virulence (vir) gene expression and browning of explant tissue were greatly influenced by different supplements. Murashige and Skoog (MS) basal salts medium supplemented with 30 g·L−1 sucrose, 0.1 g·L−1 l-glutamine and 5 g·L−1 polyvinylpolypyrrolidone (PVPP) as co-cultivation and post co-cultivation media could maintain these parameters better that ultimately led to significant improvement of hairy root generation efficiency compared to that in the control (MS + 30 g·L−1 sucrose). Additionally, the reporter genes β-glucuronidase (gusA) and cyan fluorescent protein (cfp) were also stably expressed in the transgenic hairy roots. Our study would be helpful in establishing a feasible approach for tea biological studies and genetic improvement of tea varieties. PMID:27428960

Mercury uptake and distribution in Lavandula stoechas plants grown in soil from Almadén mining district (Spain).

PubMed

Sierra, M J; Millán, R; Esteban, E

2009-11-01

This work studies mercury root uptake by Lavandula stoechas var. Kew Red (lavender) and the distribution of this metal through the plant under greenhouse conditions along three consecutive seasons. Mercury concentration in plant tissues and in the different products obtained from lavender plants (essential oil, toilet water and in lavender tea) was assessed in order to evaluate the possible cultivation of lavender as a profitable alternative land use to mercury mining in the Almadén area once the mine had been closed down. Mercury concentration in useful parts of the plant was low (0.03-0.55 mg kg(-1)). Likewise, the essential oil, toilet water and tea obtained from these plants presented very low mercury levels, below the detection limit of the used equipment (<0.5 microg kg(-1)). In the case of the obtained tea, according to the recommendations given by the World Health Organization, the maximum daily intake of it without intoxication risk would be 85.2l. So, although other sources of mercury intake should also be considered in order to elaborate a complete toxicological risk assessment. Lavender data, obtained under this greenhouse working conditions, shows that lavender cultivation could be an alternative crop in the Almadén area.

Links between Ammonia Oxidizer Community Structure, Abundance, and Nitrification Potential in Acidic Soils ▿ †

PubMed Central

Yao, Huaiying; Gao, Yangmei; Nicol, Graeme W.; Campbell, Colin D.; Prosser, James I.; Zhang, Limei; Han, Wenyan; Singh, Brajesh K.

2011-01-01

Ammonia oxidation is the first and rate-limiting step of nitrification and is performed by both ammonia-oxidizing archaea (AOA) and bacteria (AOB). However, the environmental drivers controlling the abundance, composition, and activity of AOA and AOB communities are not well characterized, and the relative importance of these two groups in soil nitrification is still debated. Chinese tea orchard soils provide an excellent system for investigating the long-term effects of low pH and nitrogen fertilization strategies. AOA and AOB abundance and community composition were therefore investigated in tea soils and adjacent pine forest soils, using quantitative PCR (qPCR), terminal restriction fragment length polymorphism (T-RFLP) and sequence analysis of respective ammonia monooxygenase (amoA) genes. There was strong evidence that soil pH was an important factor controlling AOB but not AOA abundance, and the ratio of AOA to AOB amoA gene abundance increased with decreasing soil pH in the tea orchard soils. In contrast, T-RFLP analysis suggested that soil pH was a key explanatory variable for both AOA and AOB community structure, but a significant relationship between community abundance and nitrification potential was observed only for AOA. High potential nitrification rates indicated that nitrification was mainly driven by AOA in these acidic soils. Dominant AOA amoA sequences in the highly acidic tea soils were all placed within a specific clade, and one AOA genotype appears to be well adapted to growth in highly acidic soils. Specific AOA and AOB populations dominated in soils at particular pH values and N content, suggesting adaptation to specific niches. PMID:21571885

Uptake of cesium-137 by crops from contaminated soils

DOE Office of Scientific and Technical Information (OSTI.GOV)

Demirel, H.; Oezer, I.; Celenk, I.

1994-11-01

The Turkish tea crop was contaminated following the Chernobyl nuclear accident. Finding ways to dispose of the contaminated tea (Camellia sinensis L.) without damaging the environment was the goal of this research conducted at the Turkish Atomic Energy Authority (TAEA). In this study, an investigation was made of {sup 137}Cs activities of the plants and the ratios of transfer of {sup 137}Cs activity to plants when the contaminated tea was applied to the soil. Experiments were conducted in the field and in pots under greenhouse conditions. The activities of the tea applied in the field ranged from 12 500 tomore » 72 800 Bq/m{sup 2}, whereas this activity was constant at 8000 Bq/pot in the greenhouse experiment. The transfer of {sup 137}Cs from soil to the plants was between 0.037 and 1.057% for wheat (Triticum aestivum L.), barley (Hordeum vulgare L.), corn (Zea mays indentata Sturt), bean (Phaseolus vulgaris L.), lettuce (Lactuca sativa L.), and grass (Lolium perenne L.). The ratio of the transfer of {sup 137}Cs activity to plants increased as the activity {sup 137}Cs in tea applied to soil was increased. The activity in the plants increased due to increased uptake of {sup 137}Cs by plants. 12 refs., 2 figs., 2 tabs.« less

Effects of Arctium lappa L. (Burdock) root tea on inflammatory status and oxidative stress in patients with knee osteoarthritis.

PubMed

Maghsoumi-Norouzabad, Leila; Alipoor, Beitollah; Abed, Reza; Eftekhar Sadat, Bina; Mesgari-Abbasi, Mehran; Asghari Jafarabadi, Mohammad

2016-03-01

This study was designed to examine the effect of Burdock root tea on inflammatory markers and oxidative stress indicators in patients with knee osteoarthritis (OA). Thirty-six patients (10 men and 26 women) aged 50-70 years old with knee osteoarthritis referred to the Physical Medicine and Rehabilitation Department of the Tabriz University of Medical Sciences Hospitals, were selected for the study and randomly divided into two groups. Anthropometric measurements, including height, weight and body mass index (BMI) were measured. For all individuals along the 42 days of study period, the same drug treatments, including two lots of 500 mg acetaminophen twice a day and one glucosamine 500 mg once a day,were considered. The intervention group received daily three cups of Burdock root tea (each cup containing 2 g/150 mL boiled water) half-hour after the meal. The control group received three cups containing 150 cc boiled water daily. We assessed inflammatory markers such as high sensitivity C-reactive protein (hs-CRP) and interleukin-6 (IL-6) and oxidative stress indicators such as total antioxidants capacity (TAC), glutathione peroxidase (GPX), superoxide dismutase (SOD) and thiobarbituric acid reactive substances before and after the intervention. The results showed that burdock root tea significantly decreased the levels of serum IL-6 (P = 0.002), hs-CRP (P = 0.003) and malondialdehyde (P < 0.001), while the levels of serum TAC (P < 0.001) and activities of SOD (P = 0.009) were significantly increased. GPX activities increased but not significantly. The results suggested that Arctium lappa L. root tea improves inflammatory status and oxidative stress in patients with knee osteoarthritis. © 2014 Asia Pacific League of Associations for Rheumatology and Wiley Publishing Asia Pty Ltd.

The geochemical characteristics of soils of vineyards and tea gardens before and after their use in the South of Russia

NASA Astrophysics Data System (ADS)

Alekseenko, Vladimir; Alekseenko, Alexey; Vlasova, Elena; Voronets, Svetlana

2013-04-01

The concentrations of 25 chemical elements in the forest soils, where formerly the vineyards and tea gardens were cultivated, and in the soils of functioning and abandoned 5, 10, 25, 30 and 50 years ago vineyards and tea gardens were considered. The loss and accumulation of elements were studied in the top-horizon (30 centimeters) during the human impact and after its ending. All the data are given with the probability of 95 %. The analyses of more than 1000 samples were used. Comparing to the forest soils, in the tea gardens soils has accumulated P (+702) and leached away Ge (-0.36), Yb (-0.54), Be (-0.84), Ba (-114) (in the gapes - concentration, tons per square kilometer). The leaching of row of elements has continued in the soils of abandoned plantations comparing to the forest soils with some changes in intensity; besides the accumulation of Mn (+318) and Ti (+804) had been occurred during the last 50 years. Comparing to the contemporary plantations in the soils of abandoned ones had been taken place the accumulation of elements during the last 50 years. Its maximum had manifested after 30 years: Mn (366) > Zn (34.8) > V (28.2) > Ni (6.6) > Ga (1.8) > Sn (0.4). The loss was detected for P. The intensity of all considered processes of loss and accumulation was spasmodic changing in the different time periods. During the last 50 years ecology-geochemical "recovery" of abandoned tea gardens soil has not happened. In the functioning vineyards soils, comparing to the initial forest soils has raised the concentrations of Cu (+16.1) and P (+96); declined - Bi (-0.12), Mo (-0.4), Co (-3), Ga (-4.3), Pb (-5.3), Li (-5.5), Mn (-126) and Ti (-684). In the soils of abandoned vineyards, comparing to the forest soils, during the last 25 years had been taken place accumulation of Mo (+0.7), Cr (+29.4), Cu (+50.3) and leaching away Co (-1.8), Ga (-3.7), Ni (-4.2), Li (-7.4). In the soils of abandoned vineyards, comparing to the functioning ones, during the last 25 years had been taken place accumulation of Bi, Mn, Cr, Mo, Cu. The most intensive accumulation of Pb, Ga and Ti was found in the soils of vineyards, which were abandoned 5 years ago. As can be seen from the above, the creation of tea gardens and vineyards has changed the geochemical characteristics of soils in the region. The processes of elements loss and accumulation continue after the end of landscapes exploitation, and they have not returned to the initial conditions for the last 25-50 years.

Wet-season spatial variability of N2O emissions from a tea field in subtropical central China

NASA Astrophysics Data System (ADS)

Fu, X.; Liu, X.; Li, Y.; Shen, J.; Wang, Y.; Zou, G.; Li, H.; Song, L.; Wu, J.

2015-01-01

Tea fields emit large amounts of nitrous oxide (N2O) to the atmosphere. Obtaining accurate estimations of N2O emissions from tea-planted soils is challenging due to strong spatial variability. We examined the spatial variability of N2O emissions from a red-soil tea field in Hunan province, China, on 22 April 2012 (in a wet season) using 147 static mini chambers approximately regular gridded in a 4.0 ha tea field. The N2O fluxes for a 30 min snapshot (10-10.30 a.m.) ranged from -1.73 to 1659.11 g N ha-1 d-1 and were positively skewed with an average flux of 102.24 g N ha-1 d-1. The N2O flux data were transformed to a normal distribution by using a logit function. The geostatistical analyses of our data indicated that the logit-transformed N2O fluxes (FLUX30t) exhibited strong spatial autocorrelation, which was characterized by an exponential semivariogram model with an effective range of 25.2 m. As observed in the wet season, the logit-transformed soil ammonium-N (NH4Nt), soil nitrate-N (NO3Nt), soil organic carbon (SOCt), total soil nitrogen (TSNt) were all found to be significantly correlated with FLUX30t (r=0.57-0.71, p<0.001). Three spatial interpolation methods (ordinary kriging, regression kriging and cokriging) were applied to estimate the spatial distribution of N2O emissions over the study area. Cokriging with NH4Nt and NO3Nt as covariables (r= 0.74 and RMSE =1.18) outperformed ordinary kriging (r= 0.18 and RMSE =1.74), regression kriging with the sample position as a predictor (r= 0.49 and RMSE =1.55) and cokriging with SOCt as a covariable (r= 0.58 and RMSE =1.44). The predictions of the three kriging interpolation methods for the total N2O emissions of the 4.0 ha tea field ranged from 148.2 to 208.1 g N d-1, based on the 30 min snapshots obtained during the wet season. Our findings suggested that to accurately estimate the total N2O emissions over a region, the environmental variables (e.g., soil properties) and the current land use pattern (e.g., tea row transects in the present study) must be included in spatial interpolation. Additionally, compared with other kriging approaches, the cokriging prediction approach showed great advantages in being easily deployed, and more importantly providing accurate regional estimation of N2O emissions from tea-planted soils.

Wet-season spatial variability in N2O emissions from a tea field in subtropical central China

NASA Astrophysics Data System (ADS)

Fu, X.; Liu, X.; Li, Y.; Shen, J.; Wang, Y.; Zou, G.; Li, H.; Song, L.; Wu, J.

2015-06-01

Tea fields emit large amounts of nitrous oxide (N2O) to the atmosphere. Obtaining accurate estimations of N2O emissions from tea-planted soils is challenging due to strong spatial variability. We examined the spatial variability in N2O emissions from a red-soil tea field in Hunan Province, China, on 22 April 2012 (in a wet season) using 147 static mini chambers approximately regular gridded in a 4.0 ha tea field. The N2O fluxes for a 30 min snapshot (10:00-10:30 a.m.) ranged from -1.73 to 1659.11 g N ha-1 d-1 and were positively skewed with an average flux of 102.24 g N ha-1 d-1. The N2O flux data were transformed to a normal distribution by using a logit function. The geostatistical analyses of our data indicated that the logit-transformed N2O fluxes (FLUX30t) exhibited strong spatial autocorrelation, which was characterized by an exponential semivariogram model with an effective range of 25.2 m. As observed in the wet season, the logit-transformed soil ammonium-N (NH4Nt), soil nitrate-N (NO3Nt), soil organic carbon (SOCt) and total soil nitrogen (TSNt) were all found to be significantly correlated with FLUX30t (r = 0.57-0.71, p < 0.001). Three spatial interpolation methods (ordinary kriging, regression kriging and cokriging) were applied to estimate the spatial distribution of N2O emissions over the study area. Cokriging with NH4Nt and NO3Nt as covariables (r = 0.74 and RMSE = 1.18) outperformed ordinary kriging (r = 0.18 and RMSE = 1.74), regression kriging with the sample position as a predictor (r = 0.49 and RMSE = 1.55) and cokriging with SOCt as a covariable (r = 0.58 and RMSE = 1.44). The predictions of the three kriging interpolation methods for the total N2O emissions of 4.0 ha tea field ranged from 148.2 to 208.1 g N d-1, based on the 30 min snapshots obtained during the wet season. Our findings suggested that to accurately estimate the total N2O emissions over a region, the environmental variables (e.g., soil properties) and the current land use pattern (e.g., tea row transects in the present study) must be included in spatial interpolation. Additionally, compared with other kriging approaches, the cokriging prediction approach showed great advantages in being easily deployed and, more importantly, providing accurate regional estimation of N2O emissions from tea-planted soils.

Natural and human impact on the land use and soil properties of the Sikkim Himalayas piedmont in India.

PubMed

Prokop, P; Płoskonka, D

2014-06-01

Natural and human causes of change in land use and soil properties were studied in the Sikkim Himalayas piedmont over the last 150 years, with a special emphasis on the period 1930-2010. Analysis of historical reports, combined with the visual interpretation of topographic maps and satellite images, indicates that the land reforms related to the location of tea gardens caused rapid deforestation of the higher elevated terraces in the late 19th century. Continuous population growth between 1930 and 2010 caused a shift in the major land use changes from the terraces to the floodplains. As a consequence, a gradual extension of tea plantation and forestry development helped in stabilizing the land use of the terraces, while the parallel deforestation of mountain catchments and floodplains for rice cultivation intensified fluvial activity. The enlargement of river-channel area by about 42% between 1930 and 2010 excluded a large part of the floodplains from cultivation and increased risk of soil degradation. The replacement of natural forest by monocultural tea and rice cultivation influenced the physical and chemical properties of the soil. Statistically significant changes were observed only in some chemical properties of the topsoil. Tea cultivation reduced the total carbon content by 26% and total nitrogen content by 33% in the surface soil horizon. The influence of rice tillage on the soil properties is masked by the fluvial activity. The combined effect of flooding and rice cultivation is reflected in the lower content of total carbon and nitrogen in the surface of the soil, namely, 76% and 77% respectively. Taking into account the long-term nature of the plantation, the soil still has the capability to support tea production. The productivity of rice depends partly on fertilization levels and partly on the natural deposition of fresh sediment eroded from mountains. Copyright © 2014 Elsevier Ltd. All rights reserved.

Root strength of tropical plants - An investigation in the Western Ghats of Kerala, India

NASA Astrophysics Data System (ADS)

Lukose Kuriakose, S.; van Beek, L. P. H.; van Westen, C. J.

2009-04-01

Earlier research on debris flows in the Tikovil River basin of the Western Ghats concluded that root cohesion is significant in maintaining the overall stability of the region. In this paper we present the most recent results (December 2008) of root tensile strength tests conducted on nine species of plants that are commonly found in the region. They are 1) Rubber (Hevea Brasiliensis), 2) Coconut Palm (Cocos nucifera), 3) Jackfruit trees (Artocarpus heterophyllus), 4) Teak (Tectona grandis), 5) Mango trees (Mangifera indica), 6) Lemon grass (Cymbopogon citratus), 7) A variety of Tamarind (Garcinia gummigutta), 8) Coffee (Coffea Arabica) and Tea (Camellia sinensis). About 1500 samples were collected of which only 380 could be tested (in the laboratory) due to breakage of roots during the tests. In the successful tests roots failed in tension. Roots having diameters between 2 mm and 12 mm were tested. Each sample tested has a length of 15 cm. Results indicate that the roots of Coffee, Tamarind, Lemon grass and Jackfruit are the strongest of the nine plant types tested whereas Tea and Teak plants had the most fragile roots. Coconut roots behaved atypical to the others, as the bark of the roots was crushed and slipped from the clamp when tested whereas its internal fiber was the strongest of all tested. Root tensile strength decreases with increasing diameters, Rubber showing more ductile behaviour than Coffee and Tamarind that behaved more brittle, root tensile strength increasing exponentially for finer roots. Teak and Tea showed almost a constant root tensile strength over the range of diameters tested and little variability. Jack fruit and mango trees showed the largest variability, which may be explained by the presence of root nodules, preventing the derivation of an unequivocal relationship between root diameters and tensile strength. This results in uncertainty of root strength estimates that are applicable. These results provide important information to quantify the upper limit of the root cohesion at the stand level in combination with land use maps. This is an indispensable component in the evaluation of slope stability in the region.

The design of tea garden environmental monitoring system based on WSN

NASA Astrophysics Data System (ADS)

Chen, Huajun; Yuan, Lina

2018-01-01

Through the application of wireless sensor network (WSN) in tea garden, it can realize the change of traditional tea garden to the modern ones, and effectively improves the comprehensive productive capacity of tea garden. According to the requirement of real-time remote in agricultural information collection and monitoring and the power supply affected by environmental limitations, based on WSN, this paper designs a set of tea garden environmental monitoring system, which achieves the monitoring nodes with ad-hoc network as well as automatic acquisition and transmission to the tea plantations of air temperature, light intensity, soil temperature and humidity.

Effect of tea products on the in vitro enzymatic digestibility of starch.

PubMed

Zhang, Haihua; Jiang, Yulan; Pan, Junxian; Lv, Yangjun; Liu, Jun; Zhang, Shikang; Zhu, Yuejin

2018-03-15

The importance of postprandial hyperglycemia in the treatment of diabetes has been recognized recently. Tea products, such as tea polyphenols (TP), epigallocatechin gallate (EGCG), matcha, and instant tea, were chosen as constituents of tea-flour food, aimed at regulating the release of glucose from starchy foods in the postprandial period. Six starches were chosen for internal composition analysis and hydrolysis studies in vitro. Corn starch, wheat starch, and lily root flour appeared to have higher resistant starch content, slower digestion profiles, and lower kinetic constants, implying sustained release of glucose in the gastrointestinal tract. The effect of tea products on starch digestion was determined in order to get a desired formulation of dietary product for patients with hyperglycemia. Compared with macha and instant tea, TP and EGCG exerted greater inhibition of amylase and amyloglucosidase, especially for corn starch with 0.5% TP or 0.5% EGCG. Copyright © 2017 Elsevier Ltd. All rights reserved.

Zinc stress affects ionome and metabolome in tea plants.

PubMed

Zhang, Yinfei; Wang, Yu; Ding, Zhaotang; Wang, Hui; Song, Lubin; Jia, Sisi; Ma, Dexin

2017-02-01

The research of physiological responses to Zn stress in plants has been extensively studied. However, the ionomics and metabolomics responses of plants to Zn stress remain largely unknown. In present study, the nutrient elements were identified involved in ion homeostasis and metabolomics changes related to Zn deficiency or excess in tea plants. Nutrient element analysis demonstrated that the concentrations of Zn affected the ion-uptake in roots and the nutrient element transportation to leaves, leading to the different distribution of P, S, Al, Ca, Fe and Cu in the tea leaves or roots. Metabolomics analysis revealed that Zn deficiency or excess differentially influenced the metabolic pathways in the tea leaves. More specifically, Zn deficiency affected the metabolism of carbohydrates, and Zn excess affected flavonoids metabolism. Additionally, the results showed that both Zn deficiency and Zn excess led to reduced nicotinamide levels, which speeded up NAD + degradation and thus reduced energy metabolism. Furthermore, element-metabolite correlation analysis illustrated that Zn contents in the tea leaves were positively correlated with organic acids, nitrogenous metabolites and some carbohydrate metabolites, and negatively correlated with the metabolites involved in secondary metabolism and some other carbohydrate metabolites. Meanwhile, metabolite-metabolite correlation analysis demonstrated that organic acids, sugars, amino acids and flavonoids played dominant roles in the regulation of the tea leaf metabolism under Zn stress. Therefore, the conclusion should be drawn that the tea plants responded to Zn stress by coordinating ion-uptake and regulation of metabolism of carbohydrates, nitrogenous metabolites, and flavonoids. Copyright © 2016 Elsevier Masson SAS. All rights reserved.

Impact of land use change on soil carbon loss of the Sikkim Himalayan piedmont

NASA Astrophysics Data System (ADS)

Prokop, Pawel; Ploskonka, Dominik

2014-05-01

Natural and human causes of change in land use on soil carbon were studied at the outlet of the Tista River from the Sikkim Himalayas over the last 150 years. Analysis of topographic maps and satellite images indicates that the land reforms related to location of tea gardens in the piedmont caused rapid deforestation of terraces in the late 19th century. Continuous population growth after 1930 initiated the replacement of floodplain forest by rice cultivation. Both processes changed soil carbon content and intensified fluvial activity expressed through terrace erosion. The replacement of natural forest by tea cultivation reduced the soil carbon content within terraces from 1.95 kg to 1.77 kg (in 1 m of topsoil) respectively. The replacement of natural forest by rice reduced the soil carbon content within floodplains from 0.42 kg to 0.23 kg (in 1 m topsoil) respectively. Much more dangerous, was terrace erosion leading to permanent removal of sediment including soil. The total loss of soil carbon in a 1 m thick soil layer due to conversion of 5 km2 forest to tea cultivation was about 900 t between 1930 and 2010. While the total soil carbon removed due to 1.8 km2 terrace erosion reached 3510 t in the same period. Result is the outcome of research project 2012/05/B/ST10/00309 of the National Science Centre (Poland).

Karaya root saponin exerts a hypocholesterolemic response in rats fed a high-cholesterol diet.

PubMed

Afrose, Sadia; Hossain, Md S; Maki, Takaaki; Tsujii, Hirotada

2009-05-01

Different sources of saponins are known to have hypocholesterolemic activity with varying degrees of efficacy. We hypothesize that karaya root saponin would efficiently reduce cholesterol. The aim of this study is to examine the comparative hypocholesterolemic effect of karaya root saponin in rats fed a high-cholesterol diet. Sixty male Wister-Imamichi rats were divided into 5 groups of 12 rats each constituting of the following: control group, soybean saponin-supplemented group, karaya root saponin-supplemented group, quillaja saponin-supplemented group, and tea saponin-supplemented group. Compared with the control diet, both the karaya root- and quillaja saponin-supplemented diets significantly reduced (P < .05) serum cholesterol and atherogenic index. Karaya root saponin significantly increased the serum high-density lipoprotein cholesterol, high-density lipoprotein cholesterol/cholesterol ratio, and fecal cholesterol concentrations (P < .05). The triacylglycerol concentration was significantly reduced only in the quillaja saponin-supplemented rats (P < .05). All the tea, soybean, karaya root, and quillaja saponins significantly reduced low-density lipoprotein cholesterol, and the greatest reduction was observed with karaya root saponin. Highest fecal bile acid concentration was found with quillaja saponin, whereas highest liver bile acid concentration was observed with karaya root saponin-supplemented rats (P < .05). These results collectively suggest that karaya root saponin can efficiently reduce serum cholesterol concentration in rats.

Accumulation of Heavy Metals in Tea Leaves and Potential Health Risk Assessment: A Case Study from Puan County, Guizhou Province, China

PubMed Central

Yang, Ruidong; Chen, Rong; Peng, Yishu; Wen, Xuefeng; Gao, Lei

2018-01-01

This study features a survey of the concentrations of aluminum (Al) and heavy metals (Mn, Pb, Cd, Hg, As, Cr, Ni, Cu, and Zn) in tea leaves and the corresponding cultivation soils (0–30 cm), carried out in Puan County (Guizhou Province, China). The average concentrations of Al, Mn, Pb, Cd, Hg, As, Cr, Ni, Cu, and Zn in the soil were 106 × 103, 214, 20.9, 0.09, 0.12, 17.5, 121, 27.8, 131.2, and 64 mg·kg−1, respectively. The heavy metals’ pollution indexes in the soil can be ranked as follows: Cu > Cr > Hg > As > Ni > Zn > Pb > Mn > Cd. The soil was moderately polluted by Cu because of the high geochemical background value of Cu in the area. The potential environment risk index (RI) showed that 7.69% out of the total sample sites were within the moderate level. Moreover, the ranges of Al, Mn, Pb, Cd, Hg, As, Cr, Ni, Cu, and Zn concentrations in young tea leaves were 250–660, 194–1130, 0.107–0.400, 0.012–0.092, 0.014–0.085, 0.073–0.456, 0.33–1.26, 6.33–14.90, 14.90–26.10, and 35.8–50.3 mg·kg−1, respectively. While in mature tea leaves, they were 4300–10,400, 536–4610, 0.560–1.265, 0.040–0.087, 0.043–0.089, 0.189–0.453, 0.69–2.91, 3.43–14.20, 6.17–16.25, and 9.1–20.0 mg·kg−1, respectively. Furthermore, the concentrations of Pb, Cu, As, Hg, Cd, and Cr in young tea leaves and mature tea leaves were all lower than the standard limit values (5.0, 30, 2.0, 0.3, 1.0, and 5.0 mg·kg−1 for Pb, Cu, As, Hg, Cd, and Cr, respectively) in China. Besides, the accumulation ability of tea leaves to Mn was the strongest, and the average bioconcentration factor (BCF) of Mn in mature tea leaves was 12.5. In addition, the average target hazard quotients (THQ) were all less than one for the young tea leaves and the average aggregate risk hazard index (HI) to adults was 0.272, indicating that there was not a potential health risk for adults through the consumption of the infusions brewed by young tea leaves. However, for mature tea leaves, the percentage which HI values were above one was 38.46%, and the risk to adults via the consumption of mature tea infusions were mainly contributed by Mn and Al. PMID:29342877

Identification of the invertase gene family (INVs) in tea plant and their expression analysis under abiotic stress.

PubMed

Qian, Wenjun; Yue, Chuan; Wang, Yuchun; Cao, Hongli; Li, Nana; Wang, Lu; Hao, Xinyuan; Wang, Xinchao; Xiao, Bin; Yang, Yajun

2016-11-01

Fourteen invertase genes were identified in the tea plant, all of which were shown to participate in regulating growth and development, as well as in responding to various abiotic stresses. Invertase (INV) can hydrolyze sucrose into glucose and fructose, which plays a principal role in regulating plant growth and development as well as the plants response to various abiotic and biotic stresses. However, currently, there is a lack of reported information, regarding the roles of INVs in either tea plant development or in the tea plants response to various stresses. In this study, 14 INV genes were identified from the transcriptome data of the tea plant (Camellia sinensis (L.) O. Kuntze), and named CsINV1-5 and CsINV7-15. Based on the results of a Blastx search and phylogenetic analysis, the CsINV genes could be clustered into 6 acid invertase (AI) genes and 8 alkaline/neutral invertase (A/N-Inv) genes. The results of tissue-specific expression analysis showed that the transcripts of all the identified CsINV genes are detectable in various tissues. Under various abiotic stress conditions, the expression patterns of the 14 CsINV genes were diverse in both the leaves and roots, and some of them were shown to be significantly expressed. Overall, we hypothesize that the identified CsINV genes all participate in regulating growth and development in the tea plant, and most likely through different signaling pathways that regulate the carbohydrate allocation and the ratio of hexose and sucrose for improving the resistance of the leaves and the roots of the tea plant to various abiotic stresses.

Effect of Aerated Compost Tea on the Growth Promotion of Lettuce, Soybean, and Sweet Corn in Organic Cultivation

PubMed Central

Kim, Min Jeong; Shim, Chang Ki; Kim, Yong Ki; Hong, Sung Jun; Park, Jong Ho; Han, Eun Jung; Kim, Jin Ho; Kim, Suk Chul

2015-01-01

This study investigated the chemical characteristics and microbial population during incubation of four kinds of aerated compost teas based on oriental medicinal herbs compost, vermicompost, rice straw compost, and mixtures of three composts (MOVR). It aimed to determine the effects of the aerated compost tea (ACT) based on MOVR on the growth promotion of red leaf lettuce, soybean and sweet corn. Findings showed that the pH level and EC of the compost tea slightly increased based on the incubation time except for rice straw compost tea. All compost teas except for oriental medicinal herbs and rice straw compost tea contained more NO−3-N than NH+4-N. Plate counts of bacteria and fungi were significantly higher than the initial compost in ACT. Microbial communities of all ACT were predominantly bacteria. The dominant bacterial genera were analyzed as Bacillus (63.0%), Ochrobactrum (13.0%), Spingomonas (6.0%) and uncultured bacterium (4.0%) by 16S rDNA analysis. The effect of four concentrations, 0.1%, 0.2%, 0.4% and 0.8% MOVR on the growth of red leaf lettuce, soybean and sweet corn was also studied in the greenhouse. The red leaf lettuce with 0.4% MOVR had the most effective concentration on growth parameters in foliage part. However, 0.8% MOVR significantly promoted the growth of root and shoot of both soybean and sweet corn. The soybean treated with higher MOVR concentration was more effective in increasing the root nodule formation by 7.25 times than in the lower MOVR concentrations Results indicated that ACT could be used as liquid nutrient fertilizer with active microorganisms for culture of variable crops under organic farming condition. PMID:26361474

Effect of Aerated Compost Tea on the Growth Promotion of Lettuce, Soybean, and Sweet Corn in Organic Cultivation.

PubMed

Kim, Min Jeong; Shim, Chang Ki; Kim, Yong Ki; Hong, Sung Jun; Park, Jong Ho; Han, Eun Jung; Kim, Jin Ho; Kim, Suk Chul

2015-09-01

This study investigated the chemical characteristics and microbial population during incubation of four kinds of aerated compost teas based on oriental medicinal herbs compost, vermicompost, rice straw compost, and mixtures of three composts (MOVR). It aimed to determine the effects of the aerated compost tea (ACT) based on MOVR on the growth promotion of red leaf lettuce, soybean and sweet corn. Findings showed that the pH level and EC of the compost tea slightly increased based on the incubation time except for rice straw compost tea. All compost teas except for oriental medicinal herbs and rice straw compost tea contained more NO(-) 3-N than NH(+) 4-N. Plate counts of bacteria and fungi were significantly higher than the initial compost in ACT. Microbial communities of all ACT were predominantly bacteria. The dominant bacterial genera were analyzed as Bacillus (63.0%), Ochrobactrum (13.0%), Spingomonas (6.0%) and uncultured bacterium (4.0%) by 16S rDNA analysis. The effect of four concentrations, 0.1%, 0.2%, 0.4% and 0.8% MOVR on the growth of red leaf lettuce, soybean and sweet corn was also studied in the greenhouse. The red leaf lettuce with 0.4% MOVR had the most effective concentration on growth parameters in foliage part. However, 0.8% MOVR significantly promoted the growth of root and shoot of both soybean and sweet corn. The soybean treated with higher MOVR concentration was more effective in increasing the root nodule formation by 7.25 times than in the lower MOVR concentrations Results indicated that ACT could be used as liquid nutrient fertilizer with active microorganisms for culture of variable crops under organic farming condition.

The use of teetaimed in Estonia, 1880s-1990s.

PubMed

Sõukand, Renata; Kalle, Raivo

2012-10-01

This research contributes to a better understanding of the criteria used for the selection of plants for making beverages. Worldwide, not only the leaves of Camellia sinensis, but also various other plants are used for making tea. We argue that the selection of plants for making tea (in Estonian teetaimed) depends on specific features possessed by or attributed to the plants. 54 plant taxa and one lichen were identified as being used for making tea, based on the analysis of Estonian historical handwritten archival records on plant use for the period from 1887 to 1994. The influence of popular literature on the use of plants for making tea was also assessed. The suitability of a plant for making tea depends on a combination of factors like multifunctional use, mild taste and attributed medicinal properties. The variety of medicinal properties attributed to teetaimed in folk medicine allowed herbal tea drinking to be considered as mild disease prevention. Hence, the roots of the Estonian tea tradition lie in the medicinal use of the plants, not oriental ceremonial tea drinking. Copyright © 2012 Elsevier Ltd. All rights reserved.

[Development of throat clearing herbal teas].

PubMed

Puodziūniene, Gene; Janulis, Valdimaras; Milasius, Arvydas; Budnikas, Milasius

2004-01-01

Medicinal herbs in tea for throat clearing are used from ancient times. Taking into consideration the bronchial mucus secretion stimulating and antispasmodic, antimicrobial, antiphlogistic and stimulating effect on the ciliated epithelium two new formulations of throat clearing herbal tea were originated. The first formulation consists of liquorice roots, sweet fennel and thyme, and the second one consists of pine gemmae, thyme and elder flowers. The methods for identification and assay of the active substances of the components were adapted. The purity of the mixtures was regulated by the limitation of the loss on drying, total ash, microbial contamination, contamination with radionuclides, heavy metals, pesticides and foreign matter. Expiry date of both throat clearing herbal teas was confirmed to be 2 years.

Using soil microbial inoculations to enhance substrate performance on extensive green roofs.

PubMed

Molineux, Chloe J; Gange, Alan C; Newport, Darryl J

2017-02-15

Green roofs are increasing in popularity in the urban environment for their contribution to green infrastructure; but their role for biodiversity is not often a design priority. Maximising biodiversity will impact positively on ecosystem services and is therefore fundamental for achieving the greatest benefits from green roofs. Extensive green roofs are lightweight systems generally constructed with a specialised growing medium that tends to be biologically limited and as such can be a harsh habitat for plants to thrive in. Thus, this investigation aimed to enhance the soil functioning with inoculations of soil microbes to increase plant diversity, improve vegetation health/performance and maximise access to soil nutrients. Manipulations included the addition of mycorrhizal fungi and a microbial mixture ('compost tea') to green roof rootzones, composed mainly of crushed brick or crushed concrete. The study revealed that growing media type and depth play a vital role in the microbial ecology of green roofs, with complex relationships between depth and type of substrate and the type of microbial inoculant applied, with no clear pattern being observed. For bait plant measurements (heights, leaf numbers, root/shoot biomass, leaf nutrients), a compost tea may have positive effects on plant performance when grown in substrates of shallower depths (5.5cm), even one year after inoculums are applied. Results from the species richness surveys show that diversity was significantly increased with the application of an AM fungal treatment and that overall, results suggest that brick-based substrate blends are most effective for vegetation performance as are deeper depths (although this varied with time). Microbial inoculations of green roof habitats appeared to be sustainable; they need only be done once for benefits to still been seen in subsequent years where treatments are added independently (not in combination). They seem to be a novel and viable method of enhancing rooftop conditions. Copyright © 2016 Elsevier B.V. All rights reserved.

[Evaluation of soil quality under different land use types in Naban River watershed, Yunnan Province of Southwest China].

PubMed

Xie, Jin; Li, Zhao-Li; Li, Yong-Mei; Guo, Fang-Fang

2011-12-01

Eighty-six topsoil (0-20 cm) samples were collected from 8 land use types (natural forest land, maize field, tea garden, paddy field, rubber plantation, flax field, banana plantation, and sugarcane field) in the Naban River Watershed National Nature Reserve and its surrounding areas, and the soil physical and chemical properties were analyzed, aimed to study the effects of land use type on the soil quality by the method of soil quality index (SQI). Comparing with natural forest land, all the cultivated lands had somewhat decreased soil organic matter content and higher soil bulk density, and the soil bulk density was significantly higher in tea garden, paddy field, rubber plantation, and banana plantation. In cultivated lands, fertilization and reclamation made the soil available potassium and phosphorus contents maintained at a higher level, probably due to the input of mineral potassium and phosphorus and the decomposition of soil organic matter. The SQI of the 8 land use types was in the order of flax field (0.595) > natural forest land (0.532) > maize field (0.516) > banana plantation (0.485) tea garden (0.480) sugarcane field (0.463) > paddy field (0.416) > rubber plantation (0.362). The soils in higher altitude production demonstration areas (1614 +/-115 m) had significant higher SQI, compared to the soils in lower altitude buffer areas (908 +/- 98 m) and junction areas (926 +/- 131 m). Among the 8 land use types, the rubber plantation in lower altitude areas had the lowest SQI, due to the lower soil organic matter and available potassium and phosphorus contents and the highest soil bulk density. Application of organic manure or intercropping with leguminous plants could be an available practice to improve the soil quality of the rubber plantation.

Effects of adjacent land-use types on the distribution of soil organic carbon stocks in the montane area of central Taiwan.

PubMed

Chen, Chiou-Pin; Juang, Kai-Wei; Cheng, Chih-Hsin; Pai, Chuang-Wen

2016-12-01

Soil organic carbon (SOC) stocks can be altered through reforestation and cropping. We estimated the effects of land use on SOC stocks after natural deciduous forests replaced by crops and coniferous plantations by examining the vertical distribution of SOC stocks at different depth intervals in an adjacent Oolong tea (Camellia sinensis L.) plantation, Moso bamboo (Phyllostachys pubescens) forest, Japanese cedar (Cryptomeria japonica) forest, and Taiwania (Taiwania cryptomerioides) forest in central Taiwan. The main soil characteristics, soil nitrogen (N) content, and soil carbon to nitrogen (C/N) ratio were also determined. Different land uses resulted in significantly higher bulk density, lower cation exchange capacity, SOC, soil N, soil C/N ratio, and SOC stocks in croplands compared to forestlands. Due to the long-term application of chemical fertilizers, a significantly lower soil pH was found in the tea plantation. Croplands had a lower soil C/N ratio because of less C input into the soil and a higher mineralization rate of organic carbon during cultivation. Similar SOC stocks were found in Taiwania and Japanese cedar forests (148.5 and 151.8 Mg C ha -1 , respectively), while the tea plantation had comparable SOC stocks to the bamboo forest (101.8 and 100.5 Mg C ha -1 , respectively). Over 40% of SOC stocks was stored in croplands and over 56% was stored in forestland within the upper 10 cm of soil. Coniferous plantations can contribute to a higher SOC stock than croplands, and a significant difference can be found in the top 0-5 cm of soil.

Root-soil air gap and resistance to water flow at the soil-root interface of Robinia pseudoacacia.

PubMed

Liu, X P; Zhang, W J; Wang, X Y; Cai, Y J; Chang, J G

2015-12-01

During periods of water deficit, growing roots may shrink, retaining only partial contact with the soil. In this study, known mathematical models were used to calculate the root-soil air gap and water flow resistance at the soil-root interface, respectively, of Robinia pseudoacacia L. under different water conditions. Using a digital camera, the root-soil air gap of R. pseudoacacia was investigated in a root growth chamber; this root-soil air gap and the model-inferred water flow resistance at the soil-root interface were compared with predictions based on a separate outdoor experiment. The results indicated progressively greater root shrinkage and loss of root-soil contact with decreasing soil water potential. The average widths of the root-soil air gap for R. pseudoacacia in open fields and in the root growth chamber were 0.24 and 0.39 mm, respectively. The resistance to water flow at the soil-root interface in both environments increased with decreasing soil water potential. Stepwise regression analysis demonstrated that soil water potential and soil temperature were the best predictors of variation in the root-soil air gap. A combination of soil water potential, soil temperature, root-air water potential difference and soil-root water potential difference best predicted the resistance to water flow at the soil-root interface. © The Author 2015. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Tissue-Specific, Development-Dependent Phenolic Compounds Accumulation Profile and Gene Expression Pattern in Tea Plant [Camellia sinensis

PubMed Central

Li, Weiwei; Zhao, Lei; Meng, Fei; Wang, Yunsheng; Tan, Huarong; Yang, Hua; Wei, Chaoling; Wan, Xiaochun; Gao, Liping; Xia, Tao

2013-01-01

Phenolic compounds in tea plant [Camellia sinensis (L.)] play a crucial role in dominating tea flavor and possess a number of key pharmacological benefits on human health. The present research aimed to study the profile of tissue-specific, development-dependent accumulation pattern of phenolic compounds in tea plant. A total of 50 phenolic compounds were identified qualitatively using liquid chromatography in tandem mass spectrometry technology. Of which 29 phenolic compounds were quantified based on their fragmentation behaviors. Most of the phenolic compounds were higher in the younger leaves than that in the stem and root, whereas the total amount of proanthocyanidins were unexpectedly higher in the root. The expression patterns of 63 structural and regulator genes involved in the shikimic acid, phenylpropanoid, and flavonoid pathways were analyzed by quantitative real-time polymerase chain reaction and cluster analysis. Based on the similarity of their expression patterns, the genes were classified into two main groups: C1 and C2; and the genes in group C1 had high relative expression level in the root or low in the bud and leaves. The expression patterns of genes in C2-2-1 and C2-2-2-1 groups were probably responsible for the development-dependent accumulation of phenolic compounds in the leaves. Enzymatic analysis suggested that the accumulation of catechins was influenced simultaneously by catabolism and anabolism. Further research is recommended to know the expression patterns of various genes and the reason for the variation in contents of different compounds in different growth stages and also in different organs. PMID:23646127

Manipulation of nitrogen leaching from tea field soil using a Trichoderma viride biofertilizer.

PubMed

Xu, Shengjun; Zhou, Sining; Ma, Shuanglong; Jiang, Cancan; Wu, Shanghua; Bai, Zhihui; Zhuang, Guoqiang; Zhuang, Xuliang

2017-12-01

With the increasing use of chemical fertilizers, negative environmental impacts have greatly increased as a result from agricultural fields. The fungus Trichoderma viride used as a biofertilizer can efficiently reduce nitrous oxide (N 2 O) emissions from subtropical tea fields in southern China. In this paper, it was further found that T. viride biofertilizer could alleviate nitrogen (N) leaching in tea fields. Gross N leaching was 1.51 kg ha -1  year -1 with no external fertilizer input, but when 225 kg N ha -1  year -1 was applied, it increased to 12.38 kg ha -1  year -1 using T. viride biofertilizer but 53.46 kg ha -1  year -1 using urea. Stepwise linear regression analysis identified the factors responsible for N leaching to be soil nitrate concentration and soil interflow, simulated here using the water balance simulation model (WaSiM-ETH). Finally, mass-scale production of T. viride biofertilizer from waste reutilization using sweet potato starch wastewater and rice straw was found to be cost-effective and feasible. These procedures could be considered a best management practice to reduce N leaching from tea fields in subtropical areas of central China and to reduce pollution from other agricultural waste products.

Crowdsourcing Austrian data on decomposition with the help of citizen scientists

NASA Astrophysics Data System (ADS)

Sandén, Taru; Berthold, Helene; Schwarz, Michael; Baumgarten, Andreas; Spiegel, Heide

2017-04-01

Decay of organic material, decomposition, is a critical process for life on earth. Through decomposition, food becomes available for plants and soil organisms that they use in their growth and maintenance. When plant material decomposes, it loses weight and releases the greenhouse gas carbon dioxide (CO2) into the atmosphere. Terrestrial soils contain about three times more carbon than the atmosphere and, therefore, changes in the balance of soil carbon storage and release can significantly amplify or attenuate global warming. Many factors affecting the global carbon cycle are already known and mapped; however, an index for decomposition rate is still missing, even though it is needed for climate modelling. The Tea Bag Index (TBI) measures decomposition in a standardised, achievable, climate-relevant, and time-relevant way by burying commercial nylon tea bags in soils for three months (Keuskamp et al., 2013). In the summer of 2016, TBI (expressed as decomposition rate (k) and stabilisation index (S)) was measured with the help of Austrian citizen scientists at 7-8 cm soil depth in three different land uses (maize croplands, grasslands and forests). In total ca. 2700 tea bags were sent to the citizen scientists of which ca. 50% were returned. The data generated by the citizen scientists will be incorporated into an Austrian as well as a global soil map of decomposition. This map can be used as input to improve climate modelling in the future.

50 CFR 23.68 - How can I trade internationally in roots of American ginseng?

Code of Federal Regulations, 2010 CFR

2010-10-01

... of American ginseng? 23.68 Section 23.68 Wildlife and Fisheries UNITED STATES FISH AND WILDLIFE... trade internationally in roots of American ginseng? (a) U.S. and foreign general provisions. Whole... as powders, pills, extracts, tonics, teas, and confectionery) of American ginseng (Panax...

50 CFR 23.68 - How can I trade internationally in roots of American ginseng?

Code of Federal Regulations, 2011 CFR

2011-10-01

... of American ginseng? 23.68 Section 23.68 Wildlife and Fisheries UNITED STATES FISH AND WILDLIFE... trade internationally in roots of American ginseng? (a) U.S. and foreign general provisions. Whole... as powders, pills, extracts, tonics, teas, and confectionery) of American ginseng (Panax...

Root Tip Shape Governs Root Elongation Rate under Increased Soil Strength1[OPEN

PubMed Central

Kirchgessner, Norbert; Walter, Achim

2017-01-01

Increased soil strength due to soil compaction or soil drying is a major limitation to root growth and crop productivity. Roots need to exert higher penetration force, resulting in increased penetration stress when elongating in soils of greater strength. This study aimed to quantify how the genotypic diversity of root tip geometry and root diameter influences root elongation under different levels of soil strength and to determine the extent to which roots adjust to increased soil strength. Fourteen wheat (Triticum aestivum) varieties were grown in soil columns packed to three bulk densities representing low, moderate, and high soil strength. Under moderate and high soil strength, smaller root tip radius-to-length ratio was correlated with higher genotypic root elongation rate, whereas root diameter was not related to genotypic root elongation. Based on cavity expansion theory, it was found that smaller root tip radius-to-length ratio reduced penetration stress, thus enabling higher root elongation rates in soils with greater strength. Furthermore, it was observed that roots could only partially adjust to increased soil strength. Root thickening was bounded by a maximum diameter, and root tips did not become more acute in response to increased soil strength. The obtained results demonstrated that root tip geometry is a pivotal trait governing root penetration stress and root elongation rate in soils of greater strength. Hence, root tip shape needs to be taken into account when selecting for crop varieties that may tolerate high soil strength. PMID:28600344

New Green Tea Cultivar 'Yumewakaba' which Quality is High on Aroma and Taste by Slight Half Fermentation of Leaves.

NASA Astrophysics Data System (ADS)

Uchino, Hiroshi; Honda, Yusuke; Nakajima, Kenta; Sasaki, Koji; Kobayashi, Akira; Tanaka, Eri; Kume, Nobuo; Sakai, Takashi; Shimazaki, Yutaka; Ishikawa, Iwao; Okano, Nobuo; Kyougoku, Hideo; Funakoshi, Shouji; Kitada, Kaichi; Fuchinoue, Yasumoto; Tanaka, Mankichi

New green tea cultivar‘Yumewakaba’has been bred at the Green Tea and Local Products Laboratory of Saitama Prefectural Agriculture and Forestry Research Center. The clone was crossed between‘Yabukita’and Saitama No.9’in 1968. Local adaptability, tolerance to bark split frost injury, and Blister blight were tested at 17 prefectural tea experiment stations from 1994 to 2002. It was registered as ‘Norin No.53’and named ‘Yumewakaba’in 20The characteristics of the cultivar are as follows The shape of the cultivar is erect type, and spread of tea bush is the same as‘Yabukita’.The size of mature leaves are smaller than those of ‘Yabukita’. Immature leaves are lustrougreen and soft. The rooting ability of nursery plants are high and taking roots after planting is good. The plucking time of the first crop of this cultivar in Saitama is 1 or 2 days later than that of ‘Yabukita’.‘Yumewakaba’is middle budding cultivar. The yield of 1st or 2nd crop is the same that of‘Yabukita. ‘Yumewakaba’is resistance to cold drought and bark split frost injury. Thlevel of resistance to freezing injur y is stronger than that of ‘Yabukita’ The damage Anthracnose is less than that of ‘Yabukita. The appearance is better than that of ‘Yabukita’, and the quality of liquor is the same as ‘Yabukita’. The quality of processed goods from slightly half fermented leaves of this cultivar is high on the aroma and the taste. ‘Yumewakaba’is suitable for northern tea producing areas, and cool semi-mountainousareas.

Effect of soil acidity, soil strength and macropores on root growth and morphology of perennial grass species differing in acid-soil resistance.

PubMed

Haling, Rebecca E; Simpson, Richard J; Culvenor, Richard A; Lambers, Hans; Richardson, Alan E

2011-03-01

It is unclear whether roots of acid-soil resistant plants have significant advantages, compared with acid-soil sensitive genotypes, when growing in high-strength, acid soils or in acid soils where macropores may allow the effects of soil acidity and strength to be avoided. The responses of root growth and morphology to soil acidity, soil strength and macropores by seedlings of five perennial grass genotypes differing in acid-soil resistance were determined, and the interaction of soil acidity and strength for growth and morphology of roots was investigated. Soil acidity and strength altered root length and architecture, root hair development, and deformed the root tip, especially in acid-soil sensitive genotypes. Root length was restricted to some extent by soil acidity in all genotypes, but the adverse impact of soil acidity on root growth by acid-soil resistant genotypes was greater at high levels of soil strength. Roots reacted to soil acidity when growing in macropores, but elongation through high-strength soil was improved. Soil strength can confound the effect of acidity on root growth, with the sensitivity of acid-resistant genotypes being greater in high-strength soils. This highlights the need to select for genotypes that resist both acidity and high soil strength. © 2010 Blackwell Publishing Ltd.

Searching for plant root traits to improve soil cohesion and resist soil erosion

NASA Astrophysics Data System (ADS)

De Baets, Sarah; Smyth, Kevin; Denbigh, Tom; Weldon, Laura; Higgins, Ben; Matyjaszkiewicz, Antoni; Meersmans, Jeroen; Chenchiah, Isaac; Liverpool, Tannie; Quine, Tim; Grierson, Claire

2017-04-01

Soil erosion poses a serious threat to future food and environmental security. Soil erosion protection measures are therefore of great importance for soil conservation and food security. Plant roots have proven to be very effective in stabilizing the soil and protecting the soil against erosion. However, no clear insights are yet obtained into the root traits that are responsible for root-soil cohesion. This is important in order to better select the best species for soil protection. Research using Arabidopsis mutants has made great progress towards explaining how root systems are generated by growth, branching, and responses to gravity, producing mutants that affect root traits. In this study, the performance of selected Arabidopsis mutants is analyzed in three root-soil cohesion assays. Measurements of detachment, uprooting force and soil detachment are here combined with the microscopic analysis of root properties, such as the presence, length and density of root hairs in this case. We found that Arabidopsis seedlings with root hairs (wild type, wer myb23, rsl4) were more difficult to detach from gel media than hairless (cpc try) or short haired (rsl4, rhd2) roots. Hairy roots (wild type, wer myb23) on mature, non-reproductive rosettes were more difficult to uproot from compost or clay soil than hairless roots (cpc try). At high root densities, erosion rates from soils with hairless roots (cpc try) were as much as 10 times those seen from soils occupied by roots with hairs (wer myb23, wild type). We find therefore root hairs play a significant role in root-soil cohesion and in minimizing erosion. This framework and associated suite of experimental assays demonstrates its ability to measure the effect of any root phenotype on the effectiveness of plant roots in binding substrates and reducing erosion.

Assessment of Culturable Tea Rhizobacteria Isolated from Tea Estates of Assam, India for Growth Promotion in Commercial Tea Cultivars

PubMed Central

Dutta, Jintu; Handique, Pratap J.; Thakur, Debajit

2015-01-01

In the present study, 217 rhizobacterial isolates were obtained from six different tea estates of Assam, India and subjected to preliminary in vitro plant growth promotion (PGP) screening for indole acetic acid (IAA) production, phosphate solubilization, siderophore production and ammonia production. Fifty isolates showed all the PGP traits and five isolates did not exhibit any PGP traits. These 50 potential isolates were further analyzed for quantitative estimation of the PGP traits along with the aminocyclopropane-1-carboxylate (ACC) deaminase, protease and cellulose production. After several rounds of screening, four rhizobacteria were selected based on their maximum ability to produce in vitro PGP traits and their partial 16S rRNA gene sequence analysis revealed that they belong to Enterobacter lignolyticus strain TG1, Burkholderia sp. stain TT6, Bacillus pseudomycoides strain SN29 and Pseudomonas aeruginosa strain KH45. To evaluate the efficacy of these four rhizobacteria as plant growth promoters, three different commercially important tea clones TV1, TV19, and TV20 plants were inoculated with these rhizobacteria in greenhouse condition and compared to the uninoculated control plants. Though, all the rhizobacterial treatments showed an increase in plant growth compared to control but the multivariate PCA analysis confirmed more growth promotion by TG1 and SN29 strains than the other treatments in all three clones. To validate this result, the fold change analysis was performed and it revealed that the tea clone TV19 plants inoculated with the E. lignolyticus strain TG1 showed maximum root biomass production with an increase in 4.3-fold, shoot biomass with increase in 3.1-fold, root length by 2.2-fold and shoot length by 1.6-fold. Moreover, two way ANOVA analysis also revealed that rhizobacterial treatment in different tea clones showed the significant increase (P < 0.05) in growth promotion compared to the control. Thus, this study indicates that the potential of these indigenous plant growth promoting rhizobacteria isolates to use as microbial inoculation or biofertilizer for growth promotion of tea crops. PMID:26617590

The effect of Bahiagrass roots on soil erosion resistance of Aquults in subtropical China

NASA Astrophysics Data System (ADS)

Ye, Chao; Guo, Zhonglu; Li, Zhaoxia; Cai, Chongfa

2017-05-01

Herbaceous species, especially their roots, are believed to have an important role in enhancing soil strength and protecting soil against erosion. This study evaluated the effects of root distribution characteristics on soil shear resistance and soil detachment rates, correlations among root mechanical properties, root chemical composition and root parameters, and whether the Wu-Waldron model can accurately estimate soil reinforcement by roots. Bahiagrass (Paspalum notatum) was planted in planter boxes by overlapping four rectangle frames (0.4 × 0.1 × 0.1 m). A series of laboratory tests of direct shear strength and soil detachment were conducted on two soils that were derived from granite and shale with different soil depths and sowing densities. The results indicated that soil aggregate stability was positively correlated with root characteristics. Over 70% of the total measured root parameters were distributed in the upper 20 cm of the soil, and they decreased with increasing soil depth and decreasing sowing density. The tensile properties (root tensile strength and root tensile force) were significantly correlated with root diameter. The contents of root main chemical compositions were significantly correlated with root diameter while hemicellulose showed no obvious trend with root diameter (P = 0.12). Root tensile strength and root tensile force were also significantly correlated with the contents of these four compositions, except hemicellulose. The relative soil detachment demonstrated a significant negative correlation with root parameters with sowing densities from 5 to 30 g m- 2, and it remained at a relatively low value when the sowing density was > 20 g m- 2. The soil detachment rate, erodibility factor and critical flow shear stress were well correlated with the root area ratio, sowing density, and soil depth. The Wu-Waldron model was found to be inappropriate for these soils, as it overestimated additional soil shear strength due to roots by 152-366% in the upper 20 cm, and 11-48% in deeper soil layers. This study demonstrated that the root area ratio was a more suitable root characteristic parameter that contributes to soil reinforcement.

[Responses of rhizosphere nitrogen and phosphorus transformations to different acid rain intensities in a hilly red soil tea plantation].

PubMed

Chen, Xi; Chen, Fu-sheng; Ye, Su-qiong; Yu, Su-qin; Fang, Xiang-min; Hu, Xiao-fei

2015-01-01

Tea (Camellia sinensis) plantation in hilly red soil region has been long impacted by acid deposition, however its effects on nitrogen (N) and phosphorus (P) transformations in rhizosphere soils remain unclear. A 25-year old tea plantation in a typical hilly red soil region was selected for an in situ simulation experiment treated by pH 4.5, pH 3.5, pH 2.5 and control. Rhizosihere and bulk soils were collected in the third year from the simulated acid deposition experiment. Soil mineral N, available P contents and major enzyme activities were analyzed using the chemical extraction and biochemical methods, and N and P mineralization rates were estimated using the indoor aerobic incubation methods. Our results showed that compared to the control, the treatments of pH 4.5, pH 3.5 and pH 2.5, respectively decreased 7.1%, 42.1% and 49.9% NO3(-)-N, 6.4%, 35.9% and 40.3% mineral N, 10.5%, 41.1% and 46.9% available P, 18.7%, 30.1% and 44.7% ammonification rate, 3.6%, 12.7% and 38.8% net N-mineralization rate, and 31.5%, 41.8% and 63.0% P mineralization rate in rhizosphere soils; however, among the 4 treatments, rhizosphere soil nitrification rate was not significantly different, the rhizosphere soil urease and acid phosphatase activities generally increased with the increasing intensity of acid rain (P<0.05). In bulk soil, compared with the control, the treatments of pH 4.5, pH 3.5 and pH 2.5 did not cause significant changes in NO3(-)-N, mineral N, available P as well as in the rates of nitrification, ammonification, net N-mineralization and P mineralization. With increasing the acid intensity, the rhizosphere effects of NH4+-N, NO3(-)-N, mineral N, ammonification and net N-mineralization rates were altered from positive to negative effects, those of urease and acid phosphatease showed the opposite trends, those of available P and P mineralization were negative and that of nitrification was positive. In sum, prolonged elevated acid rain could reduce N and P transformation rates, decrease their availability, alter their rhizosphere effects, and have impact on nutrient cycling in tea plantation.

Root hairs improve root penetration, root-soil contact, and phosphorus acquisition in soils of different strength.

PubMed

Haling, Rebecca E; Brown, Lawrie K; Bengough, A Glyn; Young, Iain M; Hallett, Paul D; White, Philip J; George, Timothy S

2013-09-01

Root hairs are a key trait for improving the acquisition of phosphorus (P) by plants. However, it is not known whether root hairs provide significant advantage for plant growth under combined soil stresses, particularly under conditions that are known to restrict root hair initiation or elongation (e.g. compacted or high-strength soils). To investigate this, the root growth and P uptake of root hair genotypes of barley, Hordeum vulgare L. (i.e. genotypes with and without root hairs), were assessed under combinations of P deficiency and high soil strength. Genotypes with root hairs were found to have an advantage for root penetration into high-strength layers relative to root hairless genotypes. In P-deficient soils, despite a 20% reduction in root hair length under high-strength conditions, genotypes with root hairs were also found to have an advantage for P uptake. However, in fertilized soils, root hairs conferred an advantage for P uptake in low-strength soil but not in high-strength soil. Improved root-soil contact, coupled with an increased supply of P to the root, may decrease the value of root hairs for P acquisition in high-strength, high-P soils. Nevertheless, this work demonstrates that root hairs are a valuable trait for plant growth and nutrient acquisition under combined soil stresses. Selecting plants with superior root hair traits is important for improving P uptake efficiency and hence the sustainability of agricultural systems.

Root hairs aid soil penetration by anchoring the root surface to pore walls

PubMed Central

Bengough, A. Glyn; Loades, Kenneth; McKenzie, Blair M.

2016-01-01

The physical role of root hairs in anchoring the root tip during soil penetration was examined. Experiments using a hairless maize mutant (Zea mays: rth3–3) and its wild-type counterpart measured the anchorage force between the primary root of maize and the soil to determine whether root hairs enabled seedling roots in artificial biopores to penetrate sandy loam soil (dry bulk density 1.0–1.5g cm−3). Time-lapse imaging was used to analyse root and seedling displacements in soil adjacent to a transparent Perspex interface. Peak anchorage forces were up to five times greater (2.5N cf. 0.5N) for wild-type roots than for hairless mutants in 1.2g cm−3 soil. Root hair anchorage enabled better soil penetration for 1.0 or 1.2g cm−3 soil, but there was no significant advantage of root hairs in the densest soil (1.5g cm−3). The anchorage force was insufficient to allow root penetration of the denser soil, probably because of less root hair penetration into pore walls and, consequently, poorer adhesion between the root hairs and the pore walls. Hairless seedlings took 33h to anchor themselves compared with 16h for wild-type roots in 1.2g cm−3 soil. Caryopses were often pushed several millimetres out of the soil before the roots became anchored and hairless roots often never became anchored securely.The physical role of root hairs in anchoring the root tip may be important in loose seed beds above more compact soil layers and may also assist root tips to emerge from biopores and penetrate the bulk soil. PMID:26798027

Root hairs aid soil penetration by anchoring the root surface to pore walls.

PubMed

Bengough, A Glyn; Loades, Kenneth; McKenzie, Blair M

2016-02-01

The physical role of root hairs in anchoring the root tip during soil penetration was examined. Experiments using a hairless maize mutant (Zea mays: rth3-3) and its wild-type counterpart measured the anchorage force between the primary root of maize and the soil to determine whether root hairs enabled seedling roots in artificial biopores to penetrate sandy loam soil (dry bulk density 1.0-1.5g cm(-3)). Time-lapse imaging was used to analyse root and seedling displacements in soil adjacent to a transparent Perspex interface. Peak anchorage forces were up to five times greater (2.5N cf. 0.5N) for wild-type roots than for hairless mutants in 1.2g cm(-3) soil. Root hair anchorage enabled better soil penetration for 1.0 or 1.2g cm(-3) soil, but there was no significant advantage of root hairs in the densest soil (1.5g cm(-3)). The anchorage force was insufficient to allow root penetration of the denser soil, probably because of less root hair penetration into pore walls and, consequently, poorer adhesion between the root hairs and the pore walls. Hairless seedlings took 33h to anchor themselves compared with 16h for wild-type roots in 1.2g cm(-3) soil. Caryopses were often pushed several millimetres out of the soil before the roots became anchored and hairless roots often never became anchored securely.The physical role of root hairs in anchoring the root tip may be important in loose seed beds above more compact soil layers and may also assist root tips to emerge from biopores and penetrate the bulk soil. © The Author 2016. Published by Oxford University Press on behalf of the Society for Experimental Biology.

Transcriptome analysis of differentially expressed genes involved in selenium accumulation in tea plant (Camellia sinensis)

PubMed Central

Liu, Yanli; Ma, Linlong; Jin, Xiaofang; Guo, Guiyi; Tan, Rongrong; Liu, Zheng; Zheng, Lin; Ye, Fei; Liu, Wei

2018-01-01

Tea plant (Camellia sinensis) has strong enrichment ability for selenium (Se). Selenite is the main form of Se absorbed and utilized by tea plant. However, the mechanism of selenite absorption and accumulation in tea plant is still unknown. In this study, RNA sequencing (RNA-seq) was used to perform transcriptomic analysis on the molecular mechanism of selenite absorption and accumulation in tea plant. 397.98 million high-quality reads were obtained and assembled into 168,212 unigenes, 89,605 of which were extensively annotated. There were 60,582 and 1,362 differentially expressed genes (DEGs) in roots and leaves, respectively. RNA-seq results were further validated by quantitative RT-PCR. Based on GO terms, the unigenes were mainly involved in cell, binding and metabolic process. KEGG pathway enrichment analysis showed that predominant pathways included ribosome and protein processing in endoplasmic reticulum. Further analysis revealed that sulfur metabolism, glutathione metabolism, selenocompound metabolism and plant hormone signal transduction responded to selenite in tea plant. Additionally, a large number of genes of higher expressions associated with phosphate transporters, sulfur assimilation, antioxidant enzymes, antioxidant substances and responses to ethylene and jasmonic acid were identified. Stress-related plant hormones might play a signaling role in promoting sulfate/selenite uptake and assimilation in tea plant. Moreover, some other Se accumulation mechanisms of tea plant were found. Our study provides a possibility for controlling Se accumulation in tea plant through bio-technologies and will be helpful for breeding new tea cultivars. PMID:29856771

Modelling increased soil cohesion by plant roots with EUROSEM

NASA Astrophysics Data System (ADS)

de Baets, S.; Poesen, J.; Torri, D.; Salvador, M. P.

2009-04-01

Soil cohesion is an important variable to model soil detachment by runoff (Morgan et al., 1998a). As soil particles are not loose, soil detachment by runoff will be limited by the cohesion of the soil material. It is generally recognized that plant roots contribute to the overall cohesion of the soil. Determination of this increased cohesion and soil roughness however is complicated and measurements of shear strength and soil reinforcement by plant roots are very time- and labour consuming. A model approach offers an alternative for the assessment of soil cohesion provided by plant roots However, few erosion models account for the effects of the below-ground biomass in their calculation of erosion rates. Therefore, the main objectives of this study is to develop an approach to improve an existing soil erosion model (EUROSEM) accounting for the erosion-reducing effects of roots. The approach for incorporating the root effects into this model is based on a comparison of measured soil detachment rates for bare and for root-permeated topsoil samples with predicted erosion rates under the same flow conditions using the erosion equation of EUROSEM. Through backwards calculation, transport capacity efficiencies and corresponding soil cohesion values can be assessed for bare and root-permeated topsoils respectively. The results are promising and show that grass roots provide a larger increase in soil cohesion as compared with tap-rooted species and that the increase in soil cohesion is not significantly different under wet and dry soil conditions, either for fibrous root systems or for tap root systems. Relationships are established between measured root density values and the corresponding calculated soil cohesion values, reflecting the effects of roots on the resistance of the topsoil to concentrated flow incision. These relationships enable one to incorporate the root effect into the soil erosion model EUROSEM, through adapting the soil cohesion input value. A scenario analysis performed with EUROSEM for different vegetation treatments, indicates that runoff and soil loss on root-permeated topsoils are slightly higher as compared to fully covered grass fields or harvested grass fields with some plant residue left, but much smaller as compared to bare topsoils. Moreover, when re-vegetating bare soils, roots are responsible for a large part of the reduction in soil loss and runoff by concentrated flow. Hence, this analysis shows that the contribution of roots to soil cohesion is very important for preventing soil loss and reducing runoff volume. The increase in soil shear strength due to the binding effect of roots on soil particles is two orders of magnitude lower as compared with soil reinforcement achieved when roots mobilize their tensile strength during soil shearing and root breakage.

Rhizosphere biophysics and root water uptake

NASA Astrophysics Data System (ADS)

Carminati, Andrea; Zarebanadkouki, Mohsen; Ahmed, Mutez A.; Passioura, John

2016-04-01

The flow of water into the roots and the (putative) presence of a large resistance at the root-soil interface have attracted the attention of plant and soil scientists for decades. Such resistance has been attributed to a partial contact between roots and soil, large gradients in soil matric potential around the roots, or accumulation of solutes at the root surface creating a negative osmotic potential. Our hypothesis is that roots are capable of altering the biophysical properties of the soil around the roots, the rhizosphere, facilitating root water uptake in dry soils. In particular, we expect that root hairs and mucilage optimally connect the roots to the soil maintaining the hydraulic continuity across the rhizosphere. Using a pressure chamber apparatus we measured the relation between transpiration rate and the water potential difference between soil and leaf xylem during drying cycles in barley mutants with and without root hairs. The samples were grown in well structured soils. At low soil moistures and high transpiration rates, large drops in water potential developed around the roots. These drops in water potential recovered very slowly, even after transpiration was severely decreased. The drops in water potential were much bigger in barley mutants without root hairs. These mutants failed to sustain high transpiration rates in dry conditions. To explain the nature of such drops in water potential across the rhizosphere we performed high resolution neutron tomography of the rhizosphere of the barleys with and without root hairs growing in the same soil described above. The tomograms suggested that the hydraulic contact between the soil structures was the highest resistance for the water flow in dry conditions. The tomograms also indicate that root hairs and mucilage improved the hydraulic contact between roots and soil structures. At high transpiration rates and low water contents, roots extracted water from the rhizosphere, while the bulk soil, due its low unsaturated conductivity, failed to compensate root water uptake. We conclude that root hairs are functional to increase the contact area between the roots and the soil structures and mucilage maintains wet the soil region between root hairs. These observations demonstrate the importance of the biophysical processes in the rhizosphere in modulating root water uptake.

Simulations and field observations of root water uptake in plots with different soil water availability.

NASA Astrophysics Data System (ADS)

Cai, Gaochao; Vanderborght, Jan; Couvreur, Valentin; Javaux, Mathieu; Vereecken, Harry

2015-04-01

Root water uptake is a main process in the hydrological cycle and vital for water management in agronomy. In most models of root water uptake, the spatial and temporal soil water status and plant root distributions are required for water flow simulations. However, dynamic root growth and root distributions are not easy and time consuming to measure by normal approaches. Furthermore, root water uptake cannot be measured directly in the field. Therefore, it is necessary to incorporate monitoring data of soil water content and potential and root distributions within a modeling framework to explore the interaction between soil water availability and root water uptake. But, most models are lacking a physically based concept to describe water uptake from soil profiles with vertical variations in soil water availability. In this contribution, we present an experimental setup in which root development, soil water content and soil water potential are monitored non-invasively in two field plots with different soil texture and for three treatments with different soil water availability: natural rain, sheltered and irrigated treatment. Root development is monitored using 7-m long horizontally installed minirhizotubes at six depths with three replicates per treatment. The monitoring data are interpreted using a model that is a one-dimensional upscaled version of root water uptake model that describes flow in the coupled soil-root architecture considering water potential gradients in the system and hydraulic conductances of the soil and root system (Couvreur et al., 2012). This model approach links the total root water uptake to an effective soil water potential in the root zone. The local root water uptake is a function of the difference between the local soil water potential and effective root zone water potential so that compensatory uptake in heterogeneous soil water potential profiles is simulated. The root system conductance is derived from inverse modelling using measurements of soil water potentials, water contents, and root distributions. The results showed that this modelling approach reproduced soil water dynamics well in the different plots and treatments. Root water uptake reduced when the effective soil water potential decreased to around -70 to -100 kPa in the root zone. Couvreur, V., Vanderborght, J., and Javaux, M.: A simple three dimensional macroscopic root water uptake model based on the hydraulic architecture approach, Hydrol. Earth Syst. Sci., 16, 2957-2971, doi:10.5194/hess-16-2957-2012, 2012.

Aggressive root pathogen Phellinus noxius and implications for western Pacific Islands

Treesearch

Sara M. Ashiglar; Phil G. Cannon; Ned B. Klopfenstein

2015-01-01

Phellinus noxius is an aggressive root rot pathogen affecting tropical and subtropical forests. Causing much damage in tropical Asia, Africa, Taiwan, Japan and the Pacific Islands, its wide host range encompasses more than 200 plant species representing 59 families (Ann et al. 2002). It can devastate agricultural plantations of tea, rubber, cocoa, avocados,...

[Effects and mechanisms of plant roots on slope reinforcement and soil erosion resistance: a research review].

PubMed

Xiong, Yan-Mei; Xia, Han-Ping; Li, Zhi-An; Cai, Xi-An

2007-04-01

Plant roots play an important role in resisting the shallow landslip and topsoil erosion of slopes by raising soil shear strength. Among the models in interpreting the mechanisms of slope reinforcement by plant roots, Wu-Waldron model is a widely accepted one. In this model, the reinforced soil strength by plant roots is positively proportional to average root tensile strength and root area ratio, the two most important factors in evaluating slope reinforcement effect of plant roots. It was found that soil erosion resistance increased with the number of plant roots, though no consistent quantitative functional relationship was observed between them. The increase of soil erosion resistance by plant roots was mainly through the actions of fiber roots less than 1 mm in diameter, while fiber roots enhanced the soil stability to resist water dispersion via increasing the number and diameter of soil water-stable aggregates. Fine roots could also improve soil permeability effectively to decrease runoff and weaken soil erosion.

Influence of Cytokinins in Combination with GA3 on Shoot Multiplication and Elongation of Tea Clone Iran 100 (Camellia sinensis (L.) O. Kuntze)

PubMed Central

Gonbad, Reza Azadi; Mohamad, Rosfarizan

2014-01-01

The use of in vitro culture has been accepted as an efficient technique for clonal propagation of many woody plants. In the present research, we report the results of a number of experiments aimed at optimizing micropropagation protocol for tea (Camellia sinensis (L.) O. Kuntze) (clone Iran 100) using nodal segments as the explant. The effect of different combinations and concentrations of plant growth regulators (PGR) (BAP, TDZ, GA3) on shoot multiplication and elongation was assessed. The influence of exposure to IBA in liquid form prior to transfer to solid media on rooting of tea microshoots was investigated. The results of this study showed that the best treatment for nodal segment multiplication in terms of the number of shoot per explant and shoot elongation was obtained using 3 mg/L BAP in combination with 0.5 mg/L GA3. TDZ was found to be inappropriate for multiplication of tea clone Iran 100 as it resulted in hyperhydricity especially at concentrations higher than 0.05 mg/L. Healthy shoots treated with 300 mg/L IBA for 30 min followed by transfer to 1/2 strength MS medium devoid of PGR resulted in 72.3% of shoots producing roots and upon transferring them to acclimatization chamber 65% survival was obtained prior to field transfer. PMID:24605069

[Root system distribution and biomechanical characteristics of Bambusa oldhami].

PubMed

Zhou, Ben-Zhi; Xu, Sheng-Hua; An, Yan-Fei; Xu, Sheng-Hua

2014-05-01

To determine the mechanism of soil stabilizing through Bambusa oldhami root system, the vertical distribution of B. oldhami root system in soil was investigated, and the tensile strength of individual root and soil shear strength were measured in B. oldhami forest. The dry mass, length, surface area and volume of the B. oldhami root system decreased with the increasing soil depth, with more than 90% of the root system occurring in the 0-40 cm soil layer. The root class with D 1 mm occupied the highest percentage of the total in terms of root length, accounting for 79.6%, but the lowest percentage of the total in terms of root volume, accounting for 8.2%. The root class with D >2 mm was the opposite, and the root class with D= 1-2 mm stayed in between. The maximum tensile resistance of B. oldhami root, either with 12% moisture content or a saturated moisture content, increased with the increasing root diameter, while the tensile strength decreased with the increasing root diameter in accordance with power function. Tensile strength of the root, with either of the two moisture contents, was significantly different among the diameter classes, with the highest tensile strength occurring in the root with D < or = 1 mm and the lowest in the root with D > or = 2 mm. The tensile strength of root with 12% moisture content was significantly higher than that with the saturated moisture content, and less effect of moisture content on root tensile strength would occur in thicker roots. The shear strengths of B. oldhami forest soil and of bare soil both increased with the increasing soil depth. The shear strength of B. oldhami forest soil had a linear positive correlation with the root content in soil, and was significantly higher than that of bare soil. The shear strength increment in B. oldhami forest was positively correlated with the root content in soil according to an exponential function, but not related significantly with soil depth.

Dissipation of the herbicide oxyfluorfen in subtropical soils and its potential to contaminate groundwater.

PubMed

Yen, Jui-Hung; Sheu, Wey-Shin; Wang, Yei-Shung

2003-02-01

The dissipation and mobility of the herbicide oxyfluorfen (2-chloro-alpha,alpha,alpha-trifluoro-p-tolyl 3-ethoxy-4-nitrophenyl ether) in field soil of Taiwan were investigated in the laboratory with six tea garden soils. The dissipation coefficients of oxyfluorfen in soils of different moisture content (30%, 60%, and 90% of soil field capacity) and soil temperature (10 degrees C, 25 degrees C, and 40 degrees C) were studied. Results indicate that the half-life of oxyfluorfen ranged from 72 to 160 days for six tea garden soils. It was found that if the temperature is high, the dissipation rate is rapid, and there is almost no dissipation at 10 degrees C. Possible contamination of groundwater by the herbicide oxyfluorfen was assessed using the behavior assessment model and the groundwater pollution-potential (GWP) model. The results obtained after evaluating the residue and travel time using the GWP model illustrated that oxyfluorfen is not very mobile in soil and may not contaminate groundwater under normal conditions. But in the case of soil of extremely low organic carbon content and coarse texture, oxyfluorfen has the potential to contaminate groundwater less than 3m deep.

Responses of seminal wheat seedling roots to soil water deficits.

PubMed

Trejo, Carlos; Else, Mark A; Atkinson, Christopher J

2018-04-01

The aims of this paper are to develop our understanding of the ways by which soil water deficits influence early wheat root growth responses, particularly how seminal roots respond to soil drying and the extent to which information on differences in soil water content are conveyed to the shoot and their impact on shoot behaviour. To achieve this, wheat seedlings have been grown, individually for around 25 days after germination in segmented soil columns within vertical plastic compartments. Roots were exposed to different soil volumetric moisture contents (SVMC) within the two compartments. Experiments where the soil in the lower compartment was allowed to dry to different extents, while the upper was maintained close to field capacity, showed that wheat seedlings allocated proportionally more root dry matter to the lower drier soil compartment. The total production of root, irrespective of the upper or lower SVMC, was similar and there were no detected effects on leaf growth rate or gas exchange. The response of seminal roots to proportionally increase their allocation of dry matter, to the drier soil was unexpected with such plasticity of roots system development traditionally linked to heterogeneous nutrient distribution than accessing soil water. In experiments where the upper soil compartment was allowed to dry, root growth slowed and leaf growth and gas exchange declined. Subsequent experiments used root growth rates to determine when seminal root tips first came into contact with drying soil, with the intentions of determining how the observed root growth rates were maintained as an explanation for the observed changes in root allocation. Measurements of seminal root ABA and ethylene from roots within the drying soil are interpreted with respect to what is known about the physiological control of root growth in drying soil. Copyright © 2018 Elsevier GmbH. All rights reserved.

Simulating root-induced rhizosphere deformation and its effect on water flow

NASA Astrophysics Data System (ADS)

Aravena, J. E.; Ruiz, S.; Mandava, A.; Regentova, E. E.; Ghezzehei, T.; Berli, M.; Tyler, S. W.

2011-12-01

Soil structure in the rhizosphere is influenced by root activities, such as mucilage production, microbial activity and root growth. Root growth alters soil structure by moving and deforming soil aggregates, affecting water and nutrient flow from the bulk soil to the root surface. In this study, we utilized synchrotron X-ray micro-tomography (XMT) and finite element analysis to quantify the effect of root-induced compaction on water flow through the rhizosphere to the root surface. In a first step, finite element meshes of structured soil around the root were created by processing rhizosphere XMT images. Then, soil deformation by root expansion was simulated using COMSOL Multiphysics° (Version 4.2) considering the soil an elasto-plastic porous material. Finally, fluid flow simulations were carried out on the deformed mesh to quantify the effect of root-induced compaction on water flow to the root surface. We found a 31% increase in water flow from the bulk soil to the root due to a 56% increase in root diameter. Simulations also show that the increase of root-soil contact area was the dominating factor with respect to the calculated increase in water flow. Increase of inter-aggregate contacts in size and number were observed within a couple of root diameters away from the root surface. But their influence on water flow was, in this case, rather limited compared to the immediate soil-root contact.

Characterization of acetanilide herbicides degrading bacteria isolated from tea garden soil.

PubMed

Wang, Yei-Shung; Liu, Jian-Chang; Chen, Wen-Ching; Yen, Jui-Hung

2008-04-01

Three different green manures were added to the tea garden soils separately and incubated for 40 days. After, incubation, acetanilide herbicides alachlor and metolachlor were spiked into the soils, separately, followed by the isolation of bacteria in each soil at designed intervals. Several bacterial strains were isolated from the soils and identified as Bacillus silvestris, B. niacini, B. pseudomycoides, B. cereus, B. thuringiensis, B. simplex, B. megaterium, and two other Bacillus sp. (Met1 and Met2). Three unique strains with different morphologies were chosen for further investigation. They were B. megaterium, B. niacini, and B. silvestris. The isolated herbicide-degrading bacteria showed optimal performance among three incubation temperatures of 30 degrees C and the best activity in the 10 to 50 microg/ml concentration of the herbicide. Each bacterial strain was able to degrade more than one kind of test herbicides. After incubation for 119 days, B. cereus showed the highest activity to degrade alachlor and propachlor, and B. thuringiensis to degrade metolachlor.

Impact of treated wastewater on growth, respiration and hydraulic conductivity of citrus root systems in light and heavy soils.

PubMed

Paudel, Indira; Cohen, Shabtai; Shaviv, Avi; Bar-Tal, Asher; Bernstein, Nirit; Heuer, Bruria; Ephrath, Jhonathan

2016-06-01

Roots interact with soil properties and irrigation water quality leading to changes in root growth, structure and function. We studied these interactions in an orchard and in lysimeters with clay and sandy loam soils. Minirhizotron imaging and manual sampling showed that root growth was three times lower in the clay relative to sandy loam soil. Treated wastewater (TWW) led to a large reduction in root growth with clay (45-55%) but not with sandy loam soil (<20%). Treated wastewater increased salt uptake, membrane leakage and proline content, and decreased root viability, carbohydrate content and osmotic potentials in the fine roots, especially in clay. These results provide evidence that TWW challenges and damages the root system. The phenology and physiology of root orders were studied in lysimeters. Soil type influenced diameter, specific root area, tissue density and cortex area similarly in all root orders, while TWW influenced these only in clay soil. Respiration rates were similar in both soils, and root hydraulic conductivity was severely reduced in clay soil. Treated wastewater increased respiration rate and reduced hydraulic conductivity of all root orders in clay but only of the lower root orders in sandy loam soil. Loss of hydraulic conductivity increased with root order in clay and clay irrigated with TWW. Respiration and hydraulic properties of all root orders were significantly affected by sodium-amended TWW in sandy loam soil. These changes in root order morphology, anatomy, physiology and hydraulic properties indicate rapid and major modifications of root systems in response to differences in soil type and water quality. © The Author 2016. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

[Characteristics of soil pH and exchangeable acidity in red soil profile under different vegetation types].

PubMed

Ji, Gang; Xu, Ming-gang; Wen, Shi-lin; Wang, Bo-ren; Zhang, Lu; Liu, Li-sheng

2015-09-01

The characteristics of soil pH and exchangeable acidity in soil profile under different vegetation types were studied in hilly red soil regions of southern Hunan Province, China. The soil samples from red soil profiles within 0-100 cm depth at fertilized plots and unfertilized plots were collected and analyzed to understand the profile distribution of soil pH and exchangeable acidity. The results showed that, pH in 0-60 cm soil from the fertilized plots decreased as the following sequence: citrus orchard > Arachis hypogaea field > tea garden. As for exchangeable acidity content, the sequence was A. hypogaea field ≤ citrus orchard < tea garden. After tea tree and A. hypogaea were planted for long time, acidification occurred in surface soil (0-40 cm), compared with the deep soil (60-100 cm), and soil pH decreased by 0.55 and 0.17 respectively, but such changes did not occur in citrus orchard. Soil pH in 0-40 cm soil from the natural recovery vegetation unfertilized plots decreased as the following sequence: Imperata cylindrica land > Castanea mollissima garden > Pinus elliottii forest ≥ Loropetalum chinensis forest. As for exchangeable acidity content, the sequence was L cylindrica land < C. mollissima garden < L. chinensis forest ≤ P. elliottii forest. Soil pH in surface soil (0-20 cm) from natural forest plots, secondary forest and Camellia oleifera forest were significantly lower than that from P. massoniana forest, decreased by 0.34 and 0.20 respectively. For exchangeable acidity content in 0-20 cm soil from natural forest plot, P. massoniana forest and secondary forest were significantly lower than C. oleifera forest. Compared with bare land, surface soil acidification in unfertilized plots except I. cylindrica land had been accelerated, and the natural secondary forest was the most serious among them, with surface soil pH decreasing by 0.52. However, the pH increased in deep soils from unfertilized plots except natural secondary forest, and I. cylindrica land was the most obvious among them, with soil pH increasing by 0.43. The effects of fertilization and vegetation type on pH and exchangeable acidity decreased with the increasing soil depth from all plots.

Litter decomposition patterns and dynamics across biomes: Initial results from the global TeaComposition initiative

NASA Astrophysics Data System (ADS)

Djukic, Ika; Kappel Schmidt, Inger; Steenberg Larsen, Klaus; Beier, Claus

2017-04-01

Litter decomposition represents one of the largest fluxes in the global terrestrial carbon cycle and a number of large-scale decomposition experiments have been conducted focusing on this fundamental soil process. However, previous studies were most often based on site-specific litters and methodologies. The contrasting litter and soil types used and the general lack of common protocols still poses a major challenge as it adds major uncertainty to meta-analyses across different experiments and sites. In the TeaComposition initiative, we aim to investigate the potential litter decomposition by using standardized substrates (tea) for comparison of temporal litter decomposition rates across different ecosystems worldwide. To this end, Lipton tea bags (Rooibos and Green Tea) has been buried in the H-A or Ah horizon and incubated over the period of 36 months within 400 sites covering diverse ecosystems in 9 zonobiomes. We measured initial litter chemistry and litter mass loss 3 months after the start of decomposition and linked the decomposition rates to site and climatic conditions as well as to the existing decompositions rates of the local litter. We will present and discuss the outcomes of this study. Acknowledgment: We are thankful to colleagues from more than 300 sites who were participating in the implementation of this initiative and who are not mentioned individually as co-authors yet.

Combinatorial effect of nicotine and black tea on heart rate variability: Useful or harmful?

PubMed

Joukar, S; Sheibani, M

2017-06-01

The effect of nicotine on heart rate variability (HRV) is controversial. Autonomic nervous system is the main regulator of heart rhythm, and heart rate variability is an appropriate index to assessment of the effects of the autonomic system on heart. In this study, the combination effect of nicotine and black tea consumption on sympatho-vagal balance and heart rate variability was investigated in rats. Male Wistar rats were randomized into four groups as control, tea (2.5 g/100 cc, daily), nicotine (2 mg/kg/d) and tea plus nicotine groups which treated for 28 days, and in the 29th day, their electrocardiograms (lead II) were recorded. The mean of high-frequency power (HF) in tea, nicotine and tea plus nicotine groups was significantly more than control group (P < .05), and low-frequency power/high-frequency power (LF/HF) ratio in the nicotine and tea + nicotine groups was significantly less than control group (P < .05). LF values did not differ significantly among groups. Mean of standard deviation of normal RR intervals (SDNN) and square root of the mean squared differences of successive RR intervals (RMSSD) increased significantly in tea, nicotine and tea + nicotine groups in comparison with control group (P < .05) Overall, 4-week administration of black tea, nicotine or their combination with dosages used in this study can increase the heart rate variability and improve the sympatho-vagal balance in rat. © 2017 John Wiley & Sons Ltd.

Tea polyphenols dominate the short-term tea (Camellia sinensis) leaf litter decomposition*

PubMed Central

Fan, Dong-mei; Fan, Kai; Yu, Cui-ping; Lu, Ya-ting; Wang, Xiao-chang

2017-01-01

Polyphenols are one of the most important secondary metabolites, and affect the decomposition of litter and soil organic matter. This study aims to monitor the mass loss rate of tea leaf litter and nutrient release pattern, and investigate the role of tea polyphenols played in this process. High-performance liquid chromatography (HPLC) and classical litter bag method were used to simulate the decomposition process of tea leaf litter and track the changes occurring in major polyphenols over eight months. The release patterns of nitrogen, potassium, calcium, and magnesium were also determined. The decomposition pattern of tea leaf litter could be described by a two-phase decomposition model, and the polyphenol/N ratio effectively regulated the degradation process. Most of the catechins decreased dramatically within two months; gallic acid (GA), catechin gallate (CG), and gallocatechin (GC) were faintly detected, while others were outside the detection limits by the end of the experiment. These results demonstrated that tea polyphenols transformed quickly and catechins had an effect on the individual conversion rate. The nutrient release pattern was different from other plants which might be due to the existence of tea polyphenols. PMID:28124839

Tea polyphenols dominate the short-term tea (Camellia sinensis) leaf litter decomposition.

PubMed

Fan, Dong-Mei; Fan, Kai; Yu, Cui-Ping; Lu, Ya-Ting; Wang, Xiao-Chang

Polyphenols are one of the most important secondary metabolites, and affect the decomposition of litter and soil organic matter. This study aims to monitor the mass loss rate of tea leaf litter and nutrient release pattern, and investigate the role of tea polyphenols played in this process. High-performance liquid chromatography (HPLC) and classical litter bag method were used to simulate the decomposition process of tea leaf litter and track the changes occurring in major polyphenols over eight months. The release patterns of nitrogen, potassium, calcium, and magnesium were also determined. The decomposition pattern of tea leaf litter could be described by a two-phase decomposition model, and the polyphenol/N ratio effectively regulated the degradation process. Most of the catechins decreased dramatically within two months; gallic acid (GA), catechin gallate (CG), and gallocatechin (GC) were faintly detected, while others were outside the detection limits by the end of the experiment. These results demonstrated that tea polyphenols transformed quickly and catechins had an effect on the individual conversion rate. The nutrient release pattern was different from other plants which might be due to the existence of tea polyphenols.

Application of the Kombucha 'tea fungus' for the enhancement of antioxidant and starch hydrolase inhibitory properties of ten herbal teas.

PubMed

Watawana, Mindani I; Jayawardena, Nilakshi; Choo, Candy; Waisundara, Viduranga Y

2016-03-01

Ten herbal teas (Acacia arabica, Aegle marmelos flower, A. marmelos root bark, Aerva lanata, Asteracantha longifolia, Cassia auriculata, Hemidesmus indicus, Hordeum vulgare, Phyllanthus emblica, Tinospora cordifolia) were fermented with the Kombucha 'tea fungus'. The pH values of the fermented beverages ranged from 4.0 to 6.0 by day 7, while the titratable acidity ranged from 2.5 to 5.0g/mL (P<0.05). Gallic acid had statistically significantly increased (P<0.05) in almost all the samples by day 7. The Oxygen radical absorbance capacity assay indicated 5 of the Kombucha beverages to have statistically significant increases (P<0.05) by day 7. The α-amylase inhibitory activities ranged from 52.5 to 67.2μg/mL in terms of IC50 values following fermentation, while the α-glucosidase inhibitory activities ranged from 95.2 to 196.1μg/mL. In conclusion, an enhancement of the antioxidant and starch hydrolase inhibitory potential of the herbal teas was observed by adding the tea fungus. Copyright © 2015 Elsevier Ltd. All rights reserved.

Long-distance abscisic acid signalling under different vertical soil moisture gradients depends on bulk root water potential and average soil water content in the root zone.

PubMed

Puértolas, Jaime; Alcobendas, Rosalía; Alarcón, Juan J; Dodd, Ian C

2013-08-01

To determine how root-to-shoot abscisic acid (ABA) signalling is regulated by vertical soil moisture gradients, root ABA concentration ([ABA](root)), the fraction of root water uptake from, and root water potential of different parts of the root zone, along with bulk root water potential, were measured to test various predictive models of root xylem ABA concentration [RX-ABA](sap). Beans (Phaseolus vulgaris L. cv. Nassau) were grown in soil columns and received different irrigation treatments (top and basal watering, and withholding water for varying lengths of time) to induce different vertical soil moisture gradients. Root water uptake was measured at four positions within the column by continuously recording volumetric soil water content (θv). Average θv was inversely related to bulk root water potential (Ψ(root)). In turn, Ψ(root) was correlated with both average [ABA](root) and [RX-ABA](sap). Despite large gradients in θv, [ABA](root) and root water potential was homogenous within the root zone. Consequently, unlike some split-root studies, root water uptake fraction from layers with different soil moisture did not influence xylem sap (ABA). This suggests two different patterns of ABA signalling, depending on how soil moisture heterogeneity is distributed within the root zone, which might have implications for implementing water-saving irrigation techniques. © 2013 John Wiley & Sons Ltd.

A model framework to represent plant-physiology and rhizosphere processes in soil profile simulation models

NASA Astrophysics Data System (ADS)

Vanderborght, J.; Javaux, M.; Couvreur, V.; Schröder, N.; Huber, K.; Abesha, B.; Schnepf, A.; Vereecken, H.

2013-12-01

Plant roots play a crucial role in several key processes in soils. Besides their impact on biogeochemical cycles and processes, they also have an important influence on physical processes such as water flow and transport of dissolved substances in soils. Interaction between plant roots and soil processes takes place at different scales and ranges from the scale of an individual root and its directly surrounding soil or rhizosphere over the scale of a root system of an individual plant in a soil profile to the scale of vegetation patterns in landscapes. Simulation models that are used to predict water flow and solute transport in soil-plant systems mainly focus on the individual plant root system scale, parameterize single-root scale phenomena, and aggregate the root system scale to the vegetation scale. In this presentation, we will focus on the transition from the single root to the root system scale. Using high resolution non-invasive imaging techniques and methods, gradients in soil properties and states around roots and their difference from the bulk soil properties could be demonstrated. Recent developments in plant sciences provide new insights in the mechanisms that control water fluxes in plants and in the adaptation of root properties or root plasticity to changing soil conditions. However, since currently used approaches to simulate root water uptake neither resolve these small scale processes nor represent processes and controls within the root system, transferring this information to the whole soil-plant system scale is a challenge. Using a simulation model that describes flow and transport processes in the soil, resolves flow and transport towards individual roots, and describes flow and transport within the root system, such a transfer could be achieved. We present a few examples that illustrate: (i) the impact of changed rhizosphere hydraulic properties, (ii) the effect of root hydraulic properties and root system architecture, (iii) the regulation of plant transpiration by root-zone produced plant hormones, and (iv) the impact of salt accumulation at the soil-root interface on root water uptake. We further propose a framework how this process knowledge could be implemented in root zone simulation models that do not resolve small scale processes.

Differential effects of fine root morphology on water dynamics in the root-soil interface

NASA Astrophysics Data System (ADS)

DeCarlo, K. F.; Bilheux, H.; Warren, J.

2017-12-01

Soil water uptake form plants, particularly in the rhizosphere, is a poorly understood question in the plant and soil sciences. Our study analyzed the role of belowground plant morphology on soil structural and water dynamics of 5 different plant species (juniper, grape, maize, poplar, maple), grown in sandy soils. Of these, the poplar system was extended to capture drying dynamics. Neutron radiography was used to characterize in-situ dynamics of the soil-water-plant system. A joint map of root morphology and soil moisture was created for the plant systems using digital image processing, where soil pixels were connected to associated root structures via minimum distance transforms. Results show interspecies emergent behavior - a sigmoidal relationship was observed between root diameter and bulk/rhizosphere soil water content difference. Extending this as a proxy for extent of rhizosphere development with root age, we observed a logistic growth pattern for the rhizosphere: minimal development in the early stages is superceded by rapid onset of rhizosphere formation, which then stabilizes/decays with the likely root suberization. Dynamics analysis of water content differences between the root/rhizosphere, and rhizosphere/bulk soil interface highlight the persistently higher water content in the root at all water content and root size ranges. At the rhizosphere/bulk soil interface, we observe a shift in soil water dynamics by root size: in super fine roots, we observe that water content is primarily lower in the rhizosphere under wetter conditions, which then gradually increases to a relatively higher water content under drier conditions. This shifts to a persistently higher rhizosphere water content relative to bulk soil in both wet/dry conditions with increased root size, suggesting that, by size, the finest root structures may contribute the most to total soil water uptake in plants.

Do root traits affect a plant's ability to influence soil erosion?

NASA Astrophysics Data System (ADS)

Burak, Emma; Quinton, John; Dodd, Ian

2017-04-01

With the ever increasing global population the agricultural sector is put under increasing pressure. This pressure is imposed on the soil and results in wide spread degradation that ultimately decreases productivity. Soil erosion is one of the main features of this degradation. Much focus has been put on the ability of plant canopies to mitigate soil erosion but little research has assessed the impact of below ground biomass. It is understood that woody roots reinforce slopes and lateral roots are believed to support the soil surface but the impact of root hairs is completely unknown. This study used two root hairless mutants one of barley (brb) and one of maize (rth3) along with their wild types (WT) to assess the capacity of different root traits to bind soil particles to the root system, creating a physical coating called a rhizosheath. The two genotypes were grown in a clay loam and periodically harvested during vegetative development. Rhizosheath weight was used to measure the ability of the root system to effectively bind soil particles, while root length was measured to standardise the results between genotypes. Overall, rhizosheath weight increased linearly with root length. When compared to WT plants of the same age, the root length of brb was, on average, 37% greater, suggesting that they compensated for the absence of root hairs by proliferating lateral roots. However, WT plants were far superior at binding soil particles as the rhizosheath weights were 5 fold greater, when expressed per unit root length. Thus root hairs are more important in binding soil particles than lateral roots. Whether these genotypic differences in root traits affect soil erosion will be assessed using mesocosm and field trials. Keywords: Soil erosion, Roots, Barley, Rhizosheath

Insecticidal activity of neem oil against Gyropsylla spegazziniana (Hemiptera: Psyllidae) nymphs on Paraguay tea seedlings.

PubMed

Formentini, M A; Alves, L F A; Schapovaloff, M E

2016-01-01

Gyropsylla spegazziniana (Paraguay tea ampul) is one of the most important pests of Paraguay tea plants, and prohibition of synthetic insecticide use for control of this pest has led to the search for alternative methods. This laboratory study aimed to compare different control strategies for G. spegazziniana, utilizing a commercial neem seed oil product. Paraguay tea seedlings were treated with neem oil solution both pre- and post-infestation with 5th instar nymphs. The systemic action of neem oil was also evaluated by treating plant soil with the neem oil solution, followed by transfer of the insects to plants 24 h post-treatment. Spray treatments were effective against the pest, especially post-infestation (80% mortality), demonstrating the potential of neem oil for control of the Paraguay tea ampul. No significant effects were observed with respect to systemic activity.

Patterns of nocturnal rehydration in root tissues of Vaccinium corymbosum L. under severe drought conditions

PubMed Central

Valenzuela-Estrada, Luis R.; Richards, James H.; Diaz, Andres; Eissensat, David M.

2009-01-01

Although roots in dry soil layers are commonly rehydrated by internal hydraulic redistribution during the nocturnal period, patterns of tissue rehydration are poorly understood. Rates of nocturnal rehydration were examined in roots of different orders in Vaccinium corymbosum L. ‘Bluecrop’ (Northern highbush blueberry) grown in a split-pot system with one set of roots in relatively moist soil and the other set of roots in dry soil. Vaccinium is noted for a highly branched and extremely fine root system. It is hypothesized that nocturnal root tissue rehydration would be slow, especially in the distal root orders because of their greater hydraulic constraints (smaller vessel diameters and fewer number of vessels). Vaccinium root hydraulic properties delayed internal water movement. Even when water was readily available to roots in the wet soil and transpiration was minimal, it took a whole night-time period of 12 h for the distal finest roots (1st to 4th order) under dry soil conditions to reach the same water potentials as fine roots in moist soil (1st to 4th order). Even though roots under dry soil equilibrated with roots in moist soil, the equilibrium point reached before sunrise was about –1.2 MPa, indicating that tissues were not fully rehydrated. Using a single-branch root model, it was estimated that individual roots exhibiting the lowest water potentials in dry soil were 1st order roots (distal finest roots of the root system). However, considered at the branch level, root orders with the highest hydraulic resistances corresponded to the lowest orders of the permanent root system (3rd-, 4th-, and 5th-order roots), thus indicating possible locations of hydraulic safety control in the root system of this species. PMID:19188275

Patterns of nocturnal rehydration in root tissues of Vaccinium corymbosum L. under severe drought conditions.

PubMed

Valenzuela-Estrada, Luis R; Richards, James H; Diaz, Andres; Eissensat, David M

2009-01-01

Although roots in dry soil layers are commonly rehydrated by internal hydraulic redistribution during the nocturnal period, patterns of tissue rehydration are poorly understood. Rates of nocturnal rehydration were examined in roots of different orders in Vaccinium corymbosum L. 'Bluecrop' (Northern highbush blueberry) grown in a split-pot system with one set of roots in relatively moist soil and the other set of roots in dry soil. Vaccinium is noted for a highly branched and extremely fine root system. It is hypothesized that nocturnal root tissue rehydration would be slow, especially in the distal root orders because of their greater hydraulic constraints (smaller vessel diameters and fewer number of vessels). Vaccinium root hydraulic properties delayed internal water movement. Even when water was readily available to roots in the wet soil and transpiration was minimal, it took a whole night-time period of 12 h for the distal finest roots (1st to 4th order) under dry soil conditions to reach the same water potentials as fine roots in moist soil (1st to 4th order). Even though roots under dry soil equilibrated with roots in moist soil, the equilibrium point reached before sunrise was about -1.2 MPa, indicating that tissues were not fully rehydrated. Using a single-branch root model, it was estimated that individual roots exhibiting the lowest water potentials in dry soil were 1st order roots (distal finest roots of the root system). However, considered at the branch level, root orders with the highest hydraulic resistances corresponded to the lowest orders of the permanent root system (3rd-, 4th-, and 5th-order roots), thus indicating possible locations of hydraulic safety control in the root system of this species.

Can differences in root responses to soil drying and compaction explain differences in performance of trees growing on landfill sites?

PubMed

Liang, Jiansheng; Zhang, Jianhua; Chan, Gilbert Y. S.; Wong, M. H.

1999-07-01

Two tropical woody species, Acacia confusa Merrill and Litsea glutinosa (Lour.) C.B. Robinson, were grown under controlled conditions in PVC pipes filled with John Innes No. 2 soil. To investigate root distribution, physiological characteristics and hydraulic conductivity, four soil treatments were imposed-well-watered and noncompacted (control), well-watered and compacted; unwatered and noncompacted, and unwatered and compacted. In L. glutinosa, rooting depth and root elongation were severely restricted when soil bulk density increased from around 1.12 to 1.62 g cm(-3), whereas soil compaction had little effect on these parameters in A. confusa. As soil drying progressed, root water potential and osmotic potential declined more slowly in L. glutinosa than in A. confusa. Both the soil drying and compaction treatments significantly stimulated the accumulation of root abscisic acid (ABA) in both species. Soil drying damaged the root cell membrane of A. confusa, but had little influence on the root cell membrane of L. glutinosa. Soil drying had a greater effect on root hydraulic conductivity (L(p)) in L. glutinosa than in A. confusa, whereas the effect of soil compaction on L(p) was less in L. glutinosa than in A. confusa. Soil drying enhanced the effects of soil compaction on root L(p). We conclude that soil drying and compaction have large species-specific effects on the distribution, growth and physiology of roots. The relationships of these root properties to the species' ability to tolerate unfavorable soil conditions were examined.

DNA analysis of soil extracts can be used to investigate fine root depth distribution of trees

PubMed Central

Bithell, Sean L.; Tran-Nguyen, Lucy T. T.; Hearnden, Mark N.; Hartley, Diana M.

2015-01-01

Understanding the root distribution of trees by soil coring is time-consuming as it requires the separation of roots from soil and classification of roots into particular size classes. This labour-intensive process can limit sample throughput and therefore sampling intensity. We investigated the use of quantitative polymerase chain reaction (qPCR) on soil DNA extractions to determine live fine root DNA density (RDD, mg DNA m−2) for mango (Mangifera indica) trees. The specificity of the qPCR was tested against DNA extracted from 10 mango cultivars and 14 weed species. All mango cultivars and no weeds were detected. Mango DNA was successfully quantified from control soil spiked with mango roots and weed species. The DNA yield of mango root sections stored in moist soil at 23–28 °C declined after 15 days to low concentrations as roots decayed, indicating that dead root materials in moist soil would not cause false-positive results. To separate large roots from samples, a root separation method for field samples was used to target the root fragments remaining in sieved (minimum 2 mm aperture) soil for RDD comparisons. Using this method we compared the seasonal RDD values of fine roots for five mango rootstock cultivars in a field trial. The mean cultivar DNA yields by depth from root fragments in the sieved soil samples had the strongest relationship (adjusted multiple R2 = 0.9307, P < 0.001) with the dry matter (g m−2) of fine (diameter <0.64 mm) roots removed from the soil by sieving. This method provides a species-specific and rapid means of comparing the distribution and concentration of live fine roots of trees in orchards using soil samples up to 500 g. PMID:25552675

The interactive impact of root branch order and soil genetic horizon on root respiration and nitrogen concentration.

PubMed

Trocha, Lidia K; Bulaj, Bartosz; Kutczynska, Paulina; Mucha, Joanna; Rutkowski, Pawel; Zadworny, Marcin

2017-08-01

In general, respiration (RS) is highly correlated with nitrogen concentration (N) in plant organs, including roots, which exhibit a positive N-RS relationship. Less is known, however, about the relationship between N and RS in roots of different branch orders within an individual tree along a vertical soil profile; this is especially true in trees with contrasting life strategies, such as pioneer Scots pine (Pinus sylvestris L.) vs mid-successional sessile oak (Quercus petraea Liebl.). In the present research, the impact of root branch order, as represented by those with absorptive vs transporting ability, and soil genetic horizon on root N, RS and the N-RS relationship was examined. Mean RS and total N concentration differed significantly among root branch orders and was significantly higher in absorptive roots than in transporting roots. The soil genetic horizon differentially affected root RS in Scots pine vs sessile oak. The genetic horizon mostly affected RS in absorptive roots of Scots pine and transporting roots in sessile oak. Root N was the highest in absorptive roots and most affected by soil genetic horizon in both tree species. Root N was not correlated with soil N, although N levels were higher in roots growing in fertile soil genetic horizons. Overall, RS in different root branch orders was positively correlated with N in both species. The N-RS relationship in roots, pooled by soil genetic horizon, was significant in both species, but was only significant in sessile oak when roots were pooled by root branch order. In both tree species, a significant interaction was found between the soil genetic horizon and root branch order with root function; however, species-specific responses were found. Both root N, which was unaffected by soil N, and the positive N-RS relationship consistently observed in different genetic horizons suggest that root function prevails over environmental factors, such as soil genetic horizon. © The Author 2017. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Do shallow soil, low water availability, or their combination increase the competition between grasses with different root systems in karst soil?

PubMed

Zhao, Yajie; Li, Zhou; Zhang, Jing; Song, Haiyan; Liang, Qianhui; Tao, Jianping; Cornelissen, Johannes H C; Liu, Jinchun

2017-04-01

Uneven soil depth and low water availability are the key limiting factors to vegetation restoration and reconstruction in limestone soils such as in vulnerable karst regions. Belowground competition will possibly increase under limited soil resources. Here, we investigate whether low resource availability (including shallow soil, low water availability, and shallow soil and low water availability combined) stimulates the competition between grasses with different root systems in karst soil, by assessing their growth response, biomass allocation, and morphological plasticity. In a full three-way factorial blocked design of soil depth by water availability by neighbor identity, we grew Festuca arundinacea (deep-rooted) and Lolium perenne (shallow-rooted) under normal versus shallow soil depth, high versus low water availability, and in monoculture (conspecific neighbor) versus mixture (neighbor of the other species). The key results were as follows: (1) total biomass and aboveground biomass in either of the species decreased with reduction of resources but were not affected by planting patterns (monoculture or mixture) even at low resource levels. (2) For F. arundinacea, root biomass, root mass fraction, total root length, and root volume were higher in mixture than in monoculture at high resource level (consistent with resource use complementarity), but lower in mixture than in monoculture at low resource levels (consistent with interspecific competition). In contrast for L. perenne, either at high or low resource level, these root traits had mostly similar values at both planting patterns. These results suggest that deep-rooted and shallow-rooted plant species can coexist in karst regions under current climatic regimes. Declining resources, due to shallow soil, a decrease in precipitation, or combined shallow soil and karst drought, increased the root competition between plants of deep-rooted and shallow-rooted species. The root systems of deep-rooted plants may be too small to get sufficient water and nutrients from dry, shallow soil, while shallow-rooted plants will maintain a dominant position with their already adaptive strategy in respect of root biomass allocation and root growth.

Coupling root architecture and pore network modeling - an attempt towards better understanding root-soil interactions

NASA Astrophysics Data System (ADS)

Leitner, Daniel; Bodner, Gernot; Raoof, Amir

2013-04-01

Understanding root-soil interactions is of high importance for environmental and agricultural management. Root uptake is an essential component in water and solute transport modeling. The amount of groundwater recharge and solute leaching significantly depends on the demand based plant extraction via its root system. Plant uptake however not only responds to the potential demand, but in most situations is limited by supply form the soil. The ability of the plant to access water and solutes in the soil is governed mainly by root distribution. Particularly under conditions of heterogeneous distribution of water and solutes in the soil, it is essential to capture the interaction between soil and roots. Root architecture models allow studying plant uptake from soil by describing growth and branching of root axes in the soil. Currently root architecture models are able to respond dynamically to water and nutrient distribution in the soil by directed growth (tropism), modified branching and enhanced exudation. The porous soil medium as rooting environment in these models is generally described by classical macroscopic water retention and sorption models, average over the pore scale. In our opinion this simplified description of the root growth medium implies several shortcomings for better understanding root-soil interactions: (i) It is well known that roots grow preferentially in preexisting pores, particularly in more rigid/dry soil. Thus the pore network contributes to the architectural form of the root system; (ii) roots themselves can influence the pore network by creating preferential flow paths (biopores) which are an essential element of structural porosity with strong impact on transport processes; (iii) plant uptake depend on both the spatial location of water/solutes in the pore network as well as the spatial distribution of roots. We therefore consider that for advancing our understanding in root-soil interactions, we need not only to extend our root models, but also improve the description of the rooting environment. Until now there have been no attempts to couple root architecture and pore network models. In our work we present a first attempt to join both types of models using the root architecture model of Leitner et al., (2010) and a pore network model presented by Raoof et al. (2010). The two main objectives of coupling both models are: (i) Representing the effect of root induced biopores on flow and transport processes: For this purpose a fixed root architecture created by the root model is superimposed as a secondary root induced pore network to the primary soil network, thus influencing the final pore topology in the network generation. (ii) Representing the influence of pre-existing pores on root branching: Using a given network of (rigid) pores, the root architecture model allocates its root axes into these preexisting pores as preferential growth paths with thereby shape the final root architecture. The main objective of our study is to reveal the potential of using a pore scale description of the plant growth medium for an improved representation of interaction processes at the interface of root and soil. References Raoof, A., Hassanizadeh, S.M. 2010. A New Method for Generating Pore-Network Models. Transp. Porous Med. 81, 391-407. Leitner, D, Klepsch, S., Bodner, G., Schnepf, S. 2010. A dynamic root system growth model based on L-Systems. Tropisms and coupling to nutrient uptake from soil. Plant Soil 332, 177-192.

Chemical Growth Regulators for Guayule Plants

NASA Technical Reports Server (NTRS)

Dastoor, M. N.; Schubert, W. W.; Petersen, G. R.

1982-01-01

Test Tubes containing Guayule - tissue cultures were used in experiments to test effects of chemical-growth regulators. The shoots grew in response to addition of 2-(3,4-dichlorophenoxy)-triethylamine (triethylamine (TEA) derivative) to agar medium. Preliminary results indicate that a class of compounds that promotes growth in soil may also promote growth in a culture medium. Further experiments are needed to define the effect of the TEA derivative.

Acclimation and soil moisture constrain sugar maple root respiration in experimentally warmed soil.

PubMed

Jarvi, Mickey P; Burton, Andrew J

2013-09-01

The response of root respiration to warmer soil can affect ecosystem carbon (C) allocation and the strength of positive feedbacks between climatic warming and soil CO2 efflux. This study sought to determine whether fine-root (<1 mm) respiration in a sugar maple (Acer saccharum Marsh.)-dominated northern hardwood forest would adjust to experimentally warmed soil, reducing C return to the atmosphere at the ecosystem scale to levels lower than that would be expected using an exponential temperature response function. Infrared heating lamps were used to warm the soil (+4 to +5 °C) in a mature sugar maple forest in a fully factorial design, including water additions used to offset the effects of warming-induced dry soil. Fine-root-specific respiration rates, root biomass, root nitrogen (N) concentration, soil temperature and soil moisture were measured from 2009 to 2011, with experimental treatments conducted from late 2010 to 2011. Partial acclimation of fine-root respiration to soil warming occurred, with soil moisture deficit further constraining specific respiration rates in heated plots. Fine-root biomass and N concentration remained unchanged. Over the 2011 growing season, ecosystem root respiration was not significantly greater in warmed soil. This result would not be predicted by models that allow respiration to increase exponentially with temperature and do not directly reduce root respiration in drier soil.

Risks associated with consumption of herbal teas.

PubMed

Manteiga, R; Park, D L; Ali, S S

1997-01-01

Plants have been used for medicinal purposes for centuries. Health-oriented individuals are turning to herbal teas as alternatives to caffeinated beverages such as coffee, tea, and cocoa and for low-caloric supplements. The popularity of herbal tea consumption has increased significantly during the past two decades in the U.S. Hundreds of different teas made up of varied mixtures of roots, leaves, seeds, barks, or other parts of shrubs, vines, or trees are sold in health food stores. Although chemists have been characterizing toxic plant constituents for over 100 years, toxicological studies of herbal teas have been limited and, therefore, the safety of many of these products is unknown. Plants synthesize secondary metabolites that are not essential in the production of energy and whose role may be in the defense mechanisms as plant toxins to their interactions with other plants, herbivores, and parasites. Pyrrolizidine alkaloids (PAs) were among the first naturally occurring carcinogens identified in plant products, and their presence in herbal teas is a matter of public health significance. Some herbal tea mixtures and single-ingredient herbal teas have been analyzed for toxic/mutagenic potential by bioassay and chromatographic techniques. Numerous human and animal intoxications have been associated with naturally occurring components, including pyrrolizidine alkaloids, tannins, and safrole. Thus, the prevention of human exposure to carcinogens or mutagens present in herbal tea mixture extracts is crucial. Preparation of infusion drinks prepared from plants appears to concentrate biologically active compounds and is a major source of PA poisoning. The quantity and consumption over a long period of time is of major concern. It is recommended that widespread consumption of herbal infusions should be minimized until data on the levels and varieties of carcinogens, mutagens, and toxicants are made available.

Evaluation of the effect of tetraethylammonium bromide and chloride on the growth and development of terrestrial plants.

PubMed

Pawłowska, Barbara; Biczak, Robert

2016-04-01

Quaternary ammonium salts (QAS), which also include ionic liquids, constitute a vast group of chemical compounds that are increasingly common in the commercial use. This situation may lead to the contamination of the natural environment and may constitute a potential threat to all its elements, including terrestrial higher plants. This paper presents the effect of tetraethylammonium chloride [TEA][Cl] and tetraethylammonium bromide [TEA][Br] on the growth and development of spring barley and common radish. The applied QAS were characterized with phytotoxicity dependent on the concentration of compound and characteristics of the study plants. Spring barley turned out to be highly susceptible plant to the analyzed compounds, which was confirmed by % inhibition of length of plants, root length and fresh weight of plants and by calculated values for EC50, NOEC as well as LOEC. On the contrary, a common radish revealed the resistance to QAS used in the study; although, phytotoxic symptoms were still observed when high concentrations of dry weight of soil were applied (1000, 3000 and 5000 mg/kg). The applied QAS caused oxidative stress symptoms, mainly in spring barley seedlings, which were manifested by decreased assimilation of pigments content, increased hydrogen peroxide (H2O2) and malondialdehyde (MDA) content in plant cells and with a changed activity of superoxide dismutase (SOD), catalase (CAT) and peroxidase (POD). Copyright © 2016 Elsevier Ltd. All rights reserved.

Jatropha curcas L. Root Structure and Growth in Diverse Soils

PubMed Central

Valdés-Rodríguez, Ofelia Andrea; Sánchez-Sánchez, Odilón; Pérez-Vázquez, Arturo; Caplan, Joshua S.; Danjon, Frédéric

2013-01-01

Unlike most biofuel species, Jatropha curcas has promise for use in marginal lands, but it may serve an additional role by stabilizing soils. We evaluated the growth and structural responsiveness of young J. curcas plants to diverse soil conditions. Soils included a sand, a sandy-loam, and a clay-loam from eastern Mexico. Growth and structural parameters were analyzed for shoots and roots, although the focus was the plasticity of the primary root system architecture (the taproot and four lateral roots). The sandy soil reduced the growth of both shoot and root systems significantly more than sandy-loam or clay-loam soils; there was particularly high plasticity in root and shoot thickness, as well as shoot length. However, the architecture of the primary root system did not vary with soil type; the departure of the primary root system from an index of perfect symmetry was 14 ± 5% (mean ± standard deviation). Although J. curcas developed more extensively in the sandy-loam and clay-loam soils than in sandy soil, it maintained a consistent root to shoot ratio and root system architecture across all types of soil. This strong genetic determination would make the species useful for soil stabilization purposes, even while being cultivated primarily for seed oil. PMID:23844412

Jatropha curcas L. root structure and growth in diverse soils.

PubMed

Valdés-Rodríguez, Ofelia Andrea; Sánchez-Sánchez, Odilón; Pérez-Vázquez, Arturo; Caplan, Joshua S; Danjon, Frédéric

2013-01-01

Unlike most biofuel species, Jatropha curcas has promise for use in marginal lands, but it may serve an additional role by stabilizing soils. We evaluated the growth and structural responsiveness of young J. curcas plants to diverse soil conditions. Soils included a sand, a sandy-loam, and a clay-loam from eastern Mexico. Growth and structural parameters were analyzed for shoots and roots, although the focus was the plasticity of the primary root system architecture (the taproot and four lateral roots). The sandy soil reduced the growth of both shoot and root systems significantly more than sandy-loam or clay-loam soils; there was particularly high plasticity in root and shoot thickness, as well as shoot length. However, the architecture of the primary root system did not vary with soil type; the departure of the primary root system from an index of perfect symmetry was 14 ± 5% (mean ± standard deviation). Although J. curcas developed more extensively in the sandy-loam and clay-loam soils than in sandy soil, it maintained a consistent root to shoot ratio and root system architecture across all types of soil. This strong genetic determination would make the species useful for soil stabilization purposes, even while being cultivated primarily for seed oil.

Root exudation and root development of lettuce (Lactuca sativa L. cv. Tizian) as affected by different soils

PubMed Central

Neumann, G.; Bott, S.; Ohler, M. A.; Mock, H.-P.; Lippmann, R.; Grosch, R.; Smalla, K.

2014-01-01

Development and activity of plant roots exhibit high adaptive variability. Although it is well-documented, that physicochemical soil properties can strongly influence root morphology and root exudation, particularly under field conditions, a comparative assessment is complicated by the impact of additional factors, such as climate and cropping history. To overcome these limitations, in this study, field soils originating from an unique experimental plot system with three different soil types, which were stored at the same field site for 10 years and exposed to the same agricultural management practice, were used for an investigation on effects of soil type on root development and root exudation. Lettuce (Lactuca sativa L. cv. Tizian) was grown as a model plant under controlled environmental conditions in a minirhizotrone system equipped with root observation windows (rhizoboxes). Root exudates were collected by placing sorption filters onto the root surface followed by subsequent extraction and GC-MS profiling of the trapped compounds. Surprisingly, even in absence of external stress factors with known impact on root exudation, such as pH extremes, water and nutrient limitations/toxicities or soil structure effects (use of sieved soils), root growth characteristics (root length, fine root development) as well as profiles of root exudates were strongly influenced by the soil type used for plant cultivation. The results coincided well with differences in rhizosphere bacterial communities, detected in field-grown lettuce plants cultivated on the same soils (Schreiter et al., this issue). The findings suggest that the observed differences may be the result of plant interactions with the soil-specific microbiomes. PMID:24478764

Root exudation and root development of lettuce (Lactuca sativa L. cv. Tizian) as affected by different soils.

PubMed

Neumann, G; Bott, S; Ohler, M A; Mock, H-P; Lippmann, R; Grosch, R; Smalla, K

2014-01-01

Development and activity of plant roots exhibit high adaptive variability. Although it is well-documented, that physicochemical soil properties can strongly influence root morphology and root exudation, particularly under field conditions, a comparative assessment is complicated by the impact of additional factors, such as climate and cropping history. To overcome these limitations, in this study, field soils originating from an unique experimental plot system with three different soil types, which were stored at the same field site for 10 years and exposed to the same agricultural management practice, were used for an investigation on effects of soil type on root development and root exudation. Lettuce (Lactuca sativa L. cv. Tizian) was grown as a model plant under controlled environmental conditions in a minirhizotrone system equipped with root observation windows (rhizoboxes). Root exudates were collected by placing sorption filters onto the root surface followed by subsequent extraction and GC-MS profiling of the trapped compounds. Surprisingly, even in absence of external stress factors with known impact on root exudation, such as pH extremes, water and nutrient limitations/toxicities or soil structure effects (use of sieved soils), root growth characteristics (root length, fine root development) as well as profiles of root exudates were strongly influenced by the soil type used for plant cultivation. The results coincided well with differences in rhizosphere bacterial communities, detected in field-grown lettuce plants cultivated on the same soils (Schreiter et al., this issue). The findings suggest that the observed differences may be the result of plant interactions with the soil-specific microbiomes.

Shaping an Optimal Soil by Root-Soil Interaction.

PubMed

Jin, Kemo; White, Philip J; Whalley, William R; Shen, Jianbo; Shi, Lei

2017-10-01

Crop production depends on the availability of water and mineral nutrients, and increased yields might be facilitated by a greater focus on roots-soil interactions. Soil properties affecting plant growth include drought, compaction, nutrient deficiency, mineral toxicity, salinity, and submergence. Plant roots respond to the soil environment both spatially and temporally by avoiding stressful soil environments and proliferating in more favorable environments. We observe that crops can be bred for specific root architectural and biochemical traits that facilitate soil exploration and resource acquisition, enabling greater crop yields. These root traits affect soil physical and chemical properties and might be utilized to improve the soil for subsequent crops. We argue that optimizing root-soil interactions is a prerequisite for future food security. Copyright © 2017 Elsevier Ltd. All rights reserved.

Root growth dynamics linked to above-ground growth in walnut (Juglans regia).

PubMed

Contador, Maria Loreto; Comas, Louise H; Metcalf, Samuel G; Stewart, William L; Porris Gomez, Ignacio; Negron, Claudia; Lampinen, Bruce D

2015-07-01

Examination of plant growth below ground is relatively scant compared with that above ground, and is needed to understand whole-plant responses to the environment. This study examines whether the seasonal timing of fine root growth and the spatial distribution of this growth through the soil profile varies in response to canopy manipulation and soil temperature. Plasticity in the seasonal timing and vertical distribution of root production in response to canopy and soil water manipulation was analysed in field-grown walnut (Juglans regia 'Chandler') using minirhizotron techniques. Root production in walnuts followed a unimodal curve, with one marked flush of root growth starting in mid-May, with a peak in mid-June. Root production declined later in the season, corresponding to increased soil temperature, as well as to the period of major carbohydrate allocation to reproduction. Canopy and soil moisture manipulation did not influence the timing of root production, but did influence the vertical distribution of roots through the soil profile. Water deficit appeared to promote root production in deeper soil layers for mining soil water. Canopy removal appeared to promote shallow root production. The findings of this study add to growing evidence that root growth in many ecosystems follows a unimodal curve with one marked flush of root growth in coordination with the initial leaf flush of the season. Root vertical distribution appeared to have greater plasticity than timing of root production in this system, with temperature and/or carbohydrate competition constraining the timing of root growth. Effects on root distribution can have serious impacts on trees, with shallow rooting having negative impacts in years with limited soil water or positive impacts in years with wet springs, and deep rooting having positive impacts on soil water mining from deeper soil layers but negative impacts in years with wet springs. © The Author 2015. Published by Oxford University Press on behalf of the Annals of Botany Company. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Development of a partial least squares-artificial neural network (PLS-ANN) hybrid model for the prediction of consumer liking scores of ready-to-drink green tea beverages.

PubMed

Yu, Peigen; Low, Mei Yin; Zhou, Weibiao

2018-01-01

In order to develop products that would be preferred by consumers, the effects of the chemical compositions of ready-to-drink green tea beverages on consumer liking were studied through regression analyses. Green tea model systems were prepared by dosing solutions of 0.1% green tea extract with differing concentrations of eight flavour keys deemed to be important for green tea aroma and taste, based on a D-optimal experimental design, before undergoing commercial sterilisation. Sensory evaluation of the green tea model system was carried out using an untrained consumer panel to obtain hedonic liking scores of the samples. Regression models were subsequently trained to objectively predict the consumer liking scores of the green tea model systems. A linear partial least squares (PLS) regression model was developed to describe the effects of the eight flavour keys on consumer liking, with a coefficient of determination (R 2 ) of 0.733, and a root-mean-square error (RMSE) of 3.53%. The PLS model was further augmented with an artificial neural network (ANN) to establish a PLS-ANN hybrid model. The established hybrid model was found to give a better prediction of consumer liking scores, based on its R 2 (0.875) and RMSE (2.41%). Copyright © 2017 Elsevier Ltd. All rights reserved.

Boron and strontium isotope ratios and major/trace elements concentrations in tea leaves at four major tea growing gardens in Taiwan.

PubMed

Chang, Cheng-Ta; You, Chen-Feng; Aggarwal, Suresh Kumar; Chung, Chuan-Hsiung; Chao, Hung-Chun; Liu, Hou-Chun

2016-06-01

Isotopic compositions of B and Sr in rocks and sediments can be used as tracers for plant provincial sources. This study aims to test whether tea leaf origin can be discriminated using (10)B/(11)B and Sr isotopic composition data, along with concentrations of major/trace elements, in tea specimens collected from major plantation gardens in Taiwan. The tea leaves were digested by microwave and analyzed by multi-collector inductively coupled plasma mass spectrometry (MC-ICPMS). The data showed significant variations in (87)Sr/(86)Sr ratios (from 0.70482 to 0.71462), which reflect changes in soil, groundwater or irrigation conditions. The most radiogenic tea leaves were found at the Taitung garden and the least radiogenic ones were from the Hualien garden. The δ (11)B was found to change appreciably (δ (11)B = 0.38-23.73 ‰) which could be due to fertilizers. The maximum δ (11)B was also observed in tea samples from the Hualien garden. Principal component analysis combining (87)Sr/(86)Sr, δ (11)B and major/trace elements results successfully discriminated different sources of major tea gardens in Taiwan, except the Hualien gardens, and this may be due to rather complicated local geological settings.

Spatial distribution of Eucalyptus roots in a deep sandy soil in the Congo: relationships with the ability of the stand to take up water and nutrients.

PubMed

Laclau, J P; Arnaud, M; Bouillet, J P; Ranger, J

2001-02-01

Spatial statistical analyses were performed to describe root distribution and changes in soil strength in a mature clonal plantation of Eucalyptus spp. in the Congo. The objective was to analyze spatial variability in root distribution. Relationships between root distribution, soil strength and the water and nutrient uptake by the stand were also investigated. We studied three, 2.35-m-wide, vertical soil profiles perpendicular to the planting row and at various distances from a representative tree. The soil profiles were divided into 25-cm2 grid cells and the number of roots in each of three diameter classes counted in each grid cell. Two profiles were 2-m deep and the third profile was 5-m deep. There was both vertical and horizontal anisotropy in the distribution of fine roots in the three profiles, with root density decreasing sharply with depth and increasing with distance from the stump. Roots were present in areas with high soil strength values (> 6,000 kPa). There was a close relationship between soil water content and soil strength in this sandy soil. Soil strength increased during the dry season mainly because of water uptake by fine roots. There were large areas with low root density, even in the topsoil. Below a depth of 3 m, fine roots were spatially concentrated and most of the soil volume was not explored by roots. This suggests the presence of drainage channels, resulting from the severe hydrophobicity of the upper soil.

Make the rhizosphere great again: microbes build walls in soil that roots pay for

NASA Astrophysics Data System (ADS)

Hallett, Paul; Naveed, Muhammad; Raffan, Annette; Bengough, Glyn; Feeney, Debbie; Brown, Lawrie; Georgy, Timothy; Cooper, Laura; Daly, Keith; Koebernick, Nicolai; Sinclair, Ian; Roose, Tiina

2017-04-01

Plant roots physically manipulate surrounding soil to ease penetration, provide anchorage, improve water and nutrient capture and enhance gaseous exchange, with knock-on impacts to habitats for microorganisms, soil stabilisation and sequestering of carbon. Root traits that alter soil physical properties include exudates, root hairs, the extent of soil drying and root architecture. We are exploring the extent that different root traits physically manipulate soils, drawing on near isogenic crop lines that differ in root hairs, architecture and exudation, and new physical approaches that quantify rhizosphere impacts. These approaches include hydromechanical testing that bridge soil physics, soil biology and materials science, small-scale measurements and non-invasive imaging to measure the rhizosphere directly. We use these data in image based models that describe retention and transport of water and nutrients in the rhizosphere. Micromechanics tests have found that barley root exudates initially disperse soil, followed by gelling after secondary decomposition of these exudates by microbes. Maize root exudates, on the other hand, caused a large amount of gelling of the soil, whereas this impact decreased with microbial decomposition. From our data on exudate viscosity, contact angle and surface tension, we have modelled the direct impact on water retention and transport in the rhizosphere, using 3D CT imaging with Synchrotron XRay CT with sufficient resolution to detect root hairs. From these images, pore structure changes were found to be affected by the presence of root hairs in barley. This could have implications to resource capture by plants, showing a secondary impact of root hairs beyond expanding the volume of soil that roots access.

Effect of dolomite and biochar addition on N2O and CO2 emissions from acidic tea field soil

PubMed Central

Win, Khin Thuzar; Shibata, Akira; Yamamoto, Akinori; Sano, Tomohito; Hirono, Yuhei

2018-01-01

A laboratory study was conducted to study the effects of liming and different biochar amendments on N2O and CO2 emissions from acidic tea field soil. The first experiment was done with three different rates of N treatment; N 300 (300 kg N ha-1), N 600 (600 kg N ha-1) and N 900 (900 kg N ha-1) and four different rates of bamboo biochar amendment; 0%, 0.5%, 1% and 2% biochar. The second experiment was done with three different biochars at a rate of 2% (rice husk, sawdust, and bamboo) and a control and lime treatment (dolomite) and control at two moisture levels (50% and 90% water filled pore space (WFPS)). The results showed that dolomite and biochar amendment significantly increased soil pH. However, only biochar amendment showed a significant increase in total carbon (C), C/N (the ratio of total carbon and total nitrogen), and C/IN ratio (the ratio of total carbon and inorganic nitrogen) at the end of incubation. Reduction in soil NO3--N concentration was observed under different biochar amendments. Bamboo biochar with the rates of 0.5, 1 and 2% reduced cumulative N2O emission by 38%, 48% and 61%, respectively, compare to the control soil in experiment 1. Dolomite and biochar, either alone or combined significantly reduced cumulative N2O emission by 4.6% to 32.7% in experiment 2. Reduction in N2O production under biochar amendment was due to increases in soil pH and decreases in the magnitude of mineral-N in soil. Although, both dolomite and biochar increased cumulative CO2 emission, only biochar amendment had a significant effect. The present study suggests that application of dolomite and biochar to acidic tea field soil can mitigate N2O emissions. PMID:29394272

Effect of dolomite and biochar addition on N2O and CO2 emissions from acidic tea field soil.

PubMed

Oo, Aung Zaw; Sudo, Shigeto; Akiyama, Hiroko; Win, Khin Thuzar; Shibata, Akira; Yamamoto, Akinori; Sano, Tomohito; Hirono, Yuhei

2018-01-01

A laboratory study was conducted to study the effects of liming and different biochar amendments on N2O and CO2 emissions from acidic tea field soil. The first experiment was done with three different rates of N treatment; N 300 (300 kg N ha-1), N 600 (600 kg N ha-1) and N 900 (900 kg N ha-1) and four different rates of bamboo biochar amendment; 0%, 0.5%, 1% and 2% biochar. The second experiment was done with three different biochars at a rate of 2% (rice husk, sawdust, and bamboo) and a control and lime treatment (dolomite) and control at two moisture levels (50% and 90% water filled pore space (WFPS)). The results showed that dolomite and biochar amendment significantly increased soil pH. However, only biochar amendment showed a significant increase in total carbon (C), C/N (the ratio of total carbon and total nitrogen), and C/IN ratio (the ratio of total carbon and inorganic nitrogen) at the end of incubation. Reduction in soil NO3--N concentration was observed under different biochar amendments. Bamboo biochar with the rates of 0.5, 1 and 2% reduced cumulative N2O emission by 38%, 48% and 61%, respectively, compare to the control soil in experiment 1. Dolomite and biochar, either alone or combined significantly reduced cumulative N2O emission by 4.6% to 32.7% in experiment 2. Reduction in N2O production under biochar amendment was due to increases in soil pH and decreases in the magnitude of mineral-N in soil. Although, both dolomite and biochar increased cumulative CO2 emission, only biochar amendment had a significant effect. The present study suggests that application of dolomite and biochar to acidic tea field soil can mitigate N2O emissions.

Rates of root and organism growth, soil conditions, and temporal and spatial development of the rhizosphere.

PubMed

Watt, Michelle; Silk, Wendy K; Passioura, John B

2006-05-01

Roots growing in soil encounter physical, chemical and biological environments that influence their rhizospheres and affect plant growth. Exudates from roots can stimulate or inhibit soil organisms that may release nutrients, infect the root, or modify plant growth via signals. These rhizosphere processes are poorly understood in field conditions. We characterize roots and their rhizospheres and rates of growth in units of distance and time so that interactions with soil organisms can be better understood in field conditions. We review: (1) distances between components of the soil, including dead roots remnant from previous plants, and the distances between new roots, their rhizospheres and soil components; (2) characteristic times (distance(2)/diffusivity) for solutes to travel distances between roots and responsive soil organisms; (3) rates of movement and growth of soil organisms; (4) rates of extension of roots, and how these relate to the rates of anatomical and biochemical ageing of root tissues and the development of the rhizosphere within the soil profile; and (5) numbers of micro-organisms in the rhizosphere and the dependence on the site of attachment to the growing tip. We consider temporal and spatial variation within the rhizosphere to understand the distribution of bacteria and fungi on roots in hard, unploughed soil, and the activities of organisms in the overlapping rhizospheres of living and dead roots clustered in gaps in most field soils. Rhizosphere distances, characteristic times for solute diffusion, and rates of root and organism growth must be considered to understand rhizosphere development. Many values used in our analysis were estimates. The paucity of reliable data underlines the rudimentary state of our knowledge of root-organism interactions in the field.

Root carbon decomposition and microbial biomass response at different soil depths

NASA Astrophysics Data System (ADS)

Rumpel, C.

2012-12-01

The relationship between root litter addition and soil organic matter (SOM) formation in top- versus subsoils is unknown. The aim of this study was to investigate root litter decomposition and stabilisation in relation to microbial parameters in different soil depths. Our conceptual approach included incubation of 13C-labelled wheat roots at 30, 60 and 90 cm soil depth for 36 months under field conditions. Quantitative root carbon contribution to SOM was assessed, changes of bulk root chemistry studied by solid-state 13C NMR spectroscopy and lignin content and composition was assessed after CuO oxidation. Compound-specific isotope analysis allowed to assess the role of root lignin for soil C storage in the different soil depths. Microbial biomass and community structure was determined after DNA extraction. After three years of incubation, O-alkyl C most likely assigned to polysaccharides decreased in all soil depth compared to the initial root material. The degree of root litter decomposition assessed by the alkyl/O-alkyl ratio decreased with increasing soil depth, while aryl/O-alkyl ratio was highest at 60 cm depth. Root-derived lignin showed depth specific concentrations (30 < 90 < 60 cm). Its composition was soil depth independent suggesting that microbial communities in all three soil depths had similar degradation abilities. Microbial biomass C and fungi contribution increased after root litter addition. Their community structure changed after root litter addition and showed horizon specific dynamics. Our study shows that root litter addition can contribute to C storage in subsoils but did not influence C storage in topsoil. We conclude that specific conditions of single soil horizons have to be taken into account if root C dynamics are to be fully understood.

Surface soil root response to season of repeated fire in a young longleaf pine plantation

Treesearch

Mary Anne Sword Sayer; James D. Haywood

2012-01-01

The potential exists for interaction between naturally high soil bulk density and low soil water content to create root-growth limiting soil strengths. This problem is commonly remedied by soil structural attributes, old root channels and other perturbations, and periods of wetness during which soil strength is favorable for root elongation. Because the application and...

Characteristic of root decomposition in a tropical rainforest in Sarawak, Malaysi

NASA Astrophysics Data System (ADS)

Ohashi, Mizue; Makita, Naoki; Katayam, Ayumi; Kume, Tomonori; Matsumoto, Kazuho; Khoon Kho, L.

2016-04-01

Woody roots play a significant role in forest carbon cycling, as up to 60 percent of tree photosynthetic production can be allocated to belowground. Root decay is one of the main processes of soil C dynamics and potentially relates to soil C sequestration. However, much less attention has been paid for root litter decomposition compared to the studies of leaf litter because roots are hidden from view. Previous studies have revealed that physico-chemical quality of roots, climate, and soil organisms affect root decomposition significantly. However, patterns and mechanisms of root decomposition are still poorly understood because of the high variability of root properties, field environment and potential decomposers. For example, root size would be a factor controlling decomposition rates, but general understanding of the difference between coarse and fine root decompositions is still lacking. Also, it is known that root decomposition is performed by soil animals, fungi and bacteria, but their relative importance is poorly understood. In this study, therefore, we aimed to characterize the root decomposition in a tropical rainforest in Sarawak, Malaysia, and clarify the impact of soil living organisms and root sizes on root litter decomposition. We buried soil cores with fine and coarse root litter bags in soil in Lambir Hills National Park. Three different types of soil cores that are covered by 1.5 cm plastic mesh, root-impermeable sheet (50um) and fungi-impermeable sheet (1um) were prepared. The soil cores were buried in February 2013 and collected 4 times, 134 days, 226 days, 786 days and 1151 days after the installation. We found that nearly 80 percent of the coarse root litter was decomposed after two years, whereas only 60 percent of the fine root litter was decomposed. Our results also showed significantly different ratio of decomposition between different cores, suggesting the different contribution of soil living organisms to decomposition process.

[Fine root dynamics and its relationship with soil fertility in tropical rainforests of Chocó].

PubMed

Quinto, Harley; Caicedo, Haylin; Thelis Perez, May; Moreno, Flavio

2016-12-01

The fine roots play an important role in the acquisition of water and minerals from the soil, the global carbon balance and mitigation of climate change. The dynamics (productivity and turnover) of fine roots is essential for nutrient cycling and carbon balance of forest ecosystems. The availability of soil water and nutrients has significantly determined the productivity and turnover of fine roots. It has been hypothesized that fine roots dynamics increases with the availability of soil resources in tropical forest ecosystems. To test this hypothesis in tropical rainforests of Chocó (ecosystems with the highest rainfall in the world), five one-ha permanent plots were established in the localities of Opogodó and Pacurita, where the productivity and turnover of fine roots were measured at 0-10 cm and 10-20 cm depth. The measurement of the fine root production was realized by the Ingrowth core method. The fine root turnover was measured like fine roots production divided mean annual biomass. In addition, soil fertility parameters (pH, nutrients, and texture) were measured and their association with productivity and turnover of fine roots was evaluated. It was found that the sites had nutrient-poor soils. The localities also differ in soil; Opogodó has sandy soils and flat topography, and Pacurita has clay soils, rich in aluminum and mountainous topography. In Opogodó fine root production was 6.50 ± 2.62 t/ha.yr (mean ± SD). In Pacurita, fine root production was 3.61 ± 0.88 t/ha.yr. Also in Opogodó, the fine root turnover was higher than in Pacurita (1.17 /y and 0.62 /y, respectively). Fine root turnover and production in the upper soil layers (10 cm upper soil) was considerably higher. Productivity and turnover of fine roots showed positive correlation with pH and contents of organic matter, total N, K, Mg, and sand; whereas correlations were negative with ECEC and contents of Al, silt, and clay. The percentage of sand was the parameter that best explained the variations of fine root production. The fine root turnover was negatively explained by soil Al availability. Results suggested the increase of fine root dynamics with soil fertility at a local scale, which also indicates that under the oligotrophic conditions of soils in tropical rainforests, fine roots tend to proliferate rapidly in small patches of soil rich in sand and nutrients.

A New Model for Root Growth in Soil with Macropores

NASA Astrophysics Data System (ADS)

Landl, M.; Huber, K.; Schnepf, A.; Vanderborght, J.; Javaux, M.; Bengough, G.; Vereecken, H.

2016-12-01

In order to study soil-root interaction processes, dynamic root architecture models which are linked to models that simulate water flow and nutrient transport in the soil-root system are needed. Such models can be used to predict the impact of soil structural features, e.g. the presence of macropores in dense subsoil, on water and nutrient uptake by plants. In dynamic root architecture models, root growth is represented by moving root tips whose growth trajectory results in the creation of linear root segments. Typically, the direction of each new root segment is calculated as the vector sum of various direction-affecting components. The use of these established methods to simulate root growth in soil containing macropores, however, failed to reproduce experimentally observed root growth patterns. We therefore developed an alternative modelling approach where we distinguish between, firstly, the driving force for root growth which is determined by the orientation of the previous root segment as well as the influence of gravitropism and, secondly, soil mechanical resistance to root growth. The latter is expressed by root conductance which represents the inverse of soil penetration resistance and is treated similarly to hydraulic conductivity in Darcy's law. At the presence of macropores, root conductance is anisotropic which leads to a difference between the direction of the driving force and the direction of the root tip movement. The model was tested using data from the literature, at pot scale, at macropore scale, and in a series of simulations where sensitivity to gravity and macropore orientation was evaluated. The model simulated root growth trajectories in structured soil at both single root and whole root-system scales, generating root systems that were similar to images from experiments. Its implementation in the three dimensional soil and root water uptake model R-SWMS enables the use of the model in the future to evaluate the effect of macropores on crop access to water and nutrients.

[Effects of soil warming on specific respiration rate and non-structural carbohydrate concentration in fine roots of Chinese fir seedlings].

PubMed

Song, Tao Tao; Chen, Guang Shui; Shi, Shun Zeng; Guo, Run Quan; Zheng, Xin; Xiong, De Cheng; Chen, Wang Yuan; Chen, Ting Ting

2018-03-01

A field mesocosm experiment with Chinese fir (Cunninghamia lanceolata) seedlings was conducted in Chenda State-Owned Forest Farm, Sanming, Fujian Province. The effects of soil warming (ambient +5 ℃) on specific respiration rates and nonstructural carbohydrate (NSC) concentrations in fine roots were measured by the ingrowth core method, to reveal the belowground responses and the adaptability of Chinese fir to global warming. The results showed that soil warming caused significant changes of fine root NSC in the second year. The NSC and starch concentrations in 0-1 mm fine roots, and the NSC and sugar concentrations in 1-2 mm fine roots decreased signifi-cantly in January. The NSC, sugar and starch concentrations in 0-1 mm roots and the starch concentration in 1-2 mm roots increased in July. Soil warming had no significant effect on fine root NSC in the third year. The specific root respiration rate of the 0-1 mm roots significantly increased in July of the second year but significantly decreased in July of the third year in the warmed plots. Compared with the 0-1 mm roots, soil warming had no significant effect on the specific root respiration rate of the 1-2 mm roots. In conclusion, the responses of fine root respiration to soil warming depended on the duration of warming. Fine root respiration partly acclimated to soil warming with increasing duration of soil warming, which kept fine root NSC being relatively stable.

[Mechanism of effects of soil microbes on cuttings rooting of Huperzia serrata].

PubMed

Li, Na; Chen, Jun; Zhu, Da-Yuan

2007-12-01

To study the effects of soil microbes of habitats on the cuttings rooting of Huperzia serrata and its mechanism. The cuttings of H. serrata were planted on the primary habitat soil and on the soil autoclaved, rooting rates were examined respectively. Changes of contents of phenolic compounds (catechin, quercetin, chlorogenic acid, ferulic acid) and indoleacetic acid (IAA) , and changes of activities of polyphenoloxidase (PPO) and peroxydase (POD) during the cuttings rooting were determined. Soil microbes of primary habitat could increase the rooting rate and the number of roots, could increase contents of catechin, chlorogenic acid, ferulic acid and IAA during rooting, and could affect activities of PPO and POD. During the rooting higher contents of catechin, chlorogenic, ferulic acid and IAA caused by soil microbes of primary habitat are important factor for rooting rate.

Overestimation of Crop Root Biomass in Field Experiments Due to Extraneous Organic Matter.

PubMed

Hirte, Juliane; Leifeld, Jens; Abiven, Samuel; Oberholzer, Hans-Rudolf; Hammelehle, Andreas; Mayer, Jochen

2017-01-01

Root biomass is one of the most relevant root parameters for studies of plant response to environmental change, soil carbon modeling or estimations of soil carbon sequestration. A major source of error in root biomass quantification of agricultural crops in the field is the presence of extraneous organic matter in soil: dead roots from previous crops, weed roots, incorporated above ground plant residues and organic soil amendments, or remnants of soil fauna. Using the isotopic difference between recent maize root biomass and predominantly C3-derived extraneous organic matter, we determined the proportions of maize root biomass carbon of total carbon in root samples from the Swiss long-term field trial "DOK." We additionally evaluated the effects of agricultural management (bio-organic and conventional), sampling depth (0-0.25, 0.25-0.5, 0.5-0.75 m) and position (within and between maize rows), and root size class (coarse and fine roots) as defined by sieve mesh size (2 and 0.5 mm) on those proportions, and quantified the success rate of manual exclusion of extraneous organic matter from root samples. Only 60% of the root mass that we retrieved from field soil cores was actual maize root biomass from the current season. While the proportions of maize root biomass carbon were not affected by agricultural management, they increased consistently with soil depth, were higher within than between maize rows, and were higher in coarse (>2 mm) than in fine (≤2 and >0.5) root samples. The success rate of manual exclusion of extraneous organic matter from root samples was related to agricultural management and, at best, about 60%. We assume that the composition of extraneous organic matter is strongly influenced by agricultural management and soil depth and governs the effect size of the investigated factors. Extraneous organic matter may result in severe overestimation of recovered root biomass and has, therefore, large implications for soil carbon modeling and estimations of the climate change mitigation potential of soils.

Symbiosis of Arbuscular Mycorrhizal Fungi and Robinia pseudoacacia L. Improves Root Tensile Strength and Soil Aggregate Stability

PubMed Central

Zhang, Haoqiang; Liu, Zhenkun; Chen, Hui; Tang, Ming

2016-01-01

Robinia pseudoacacia L. (black locust) is a widely planted tree species on Loess Plateau for revegetation. Due to its symbiosis forming capability with arbuscular mycorrhizal (AM) fungi, we explored the influence of arbuscular mycorrhizal fungi on plant biomass, root morphology, root tensile strength and soil aggregate stability in a pot experiment. We inoculated R. pseudoacacia with/without AM fungus (Rhizophagus irregularis or Glomus versiforme), and measured root colonization, plant growth, root morphological characters, root tensile force and tensile strength, and parameters for soil aggregate stability at twelve weeks after inoculation. AM fungi colonized more than 70% plant root, significantly improved plant growth. Meanwhile, AM fungi elevated root morphological parameters, root tensile force, root tensile strength, Glomalin-related soil protein (GRSP) content in soil, and parameters for soil aggregate stability such as water stable aggregate (WSA), mean weight diameter (MWD) and geometric mean diameter (GMD). Root length was highly correlated with WSA, MWD and GMD, while hyphae length was highly correlated with GRSP content. The improved R. pseudoacacia growth, root tensile strength and soil aggregate stability indicated that AM fungi could accelerate soil fixation and stabilization with R. pseudoacacia, and its function in revegetation on Loess Plateau deserves more attention. PMID:27064570

Symbiosis of Arbuscular Mycorrhizal Fungi and Robinia pseudoacacia L. Improves Root Tensile Strength and Soil Aggregate Stability.

PubMed

Zhang, Haoqiang; Liu, Zhenkun; Chen, Hui; Tang, Ming

2016-01-01

Robinia pseudoacacia L. (black locust) is a widely planted tree species on Loess Plateau for revegetation. Due to its symbiosis forming capability with arbuscular mycorrhizal (AM) fungi, we explored the influence of arbuscular mycorrhizal fungi on plant biomass, root morphology, root tensile strength and soil aggregate stability in a pot experiment. We inoculated R. pseudoacacia with/without AM fungus (Rhizophagus irregularis or Glomus versiforme), and measured root colonization, plant growth, root morphological characters, root tensile force and tensile strength, and parameters for soil aggregate stability at twelve weeks after inoculation. AM fungi colonized more than 70% plant root, significantly improved plant growth. Meanwhile, AM fungi elevated root morphological parameters, root tensile force, root tensile strength, Glomalin-related soil protein (GRSP) content in soil, and parameters for soil aggregate stability such as water stable aggregate (WSA), mean weight diameter (MWD) and geometric mean diameter (GMD). Root length was highly correlated with WSA, MWD and GMD, while hyphae length was highly correlated with GRSP content. The improved R. pseudoacacia growth, root tensile strength and soil aggregate stability indicated that AM fungi could accelerate soil fixation and stabilization with R. pseudoacacia, and its function in revegetation on Loess Plateau deserves more attention.

Current advancements and challenges in soil-root interactions modelling

NASA Astrophysics Data System (ADS)

Schnepf, Andrea; Huber, Katrin; Abesha, Betiglu; Meunier, Felicien; Leitner, Daniel; Roose, Tiina; Javaux, Mathieu; Vanderborght, Jan; Vereecken, Harry

2015-04-01

Roots change their surrounding soil chemically, physically and biologically. This includes changes in soil moisture and solute concentration, the exudation of organic substances into the rhizosphere, increased growth of soil microorganisms, or changes in soil structure. The fate of water and solutes in the root zone is highly determined by these root-soil interactions. Mathematical models of soil-root systems in combination with non-invasive techniques able to characterize root systems are a promising tool to understand and predict the behaviour of water and solutes in the root zone. With respect to different fields of applications, predictive mathematical models can contribute to the solution of optimal control problems in plant recourse efficiency. This may result in significant gains in productivity, efficiency and environmental sustainability in various land use activities. Major challenges include the coupling of model parameters of the relevant processes with the surrounding environment such as temperature, nutrient concentration or soil water content. A further challenge is the mathematical description of the different spatial and temporal scales involved. This includes in particular the branched structures formed by root systems or the external mycelium of mycorrhizal fungi. Here, reducing complexity as well as bridging between spatial scales is required. Furthermore, the combination of experimental and mathematical techniques may advance the field enormously. Here, the use of root system, soil and rhizosphere models is presented through a number of modelling case studies, including image based modelling of phosphate uptake by a root with hairs, model-based optimization of root architecture for phosphate uptake from soil, upscaling of rhizosphere models, modelling root growth in structured soil, and the effect of root hydraulic architecture on plant water uptake efficiency and drought resistance.

Current Advancements and Challenges in Soil-Root Interactions Modelling

NASA Astrophysics Data System (ADS)

Schnepf, A.; Huber, K.; Abesha, B.; Meunier, F.; Leitner, D.; Roose, T.; Javaux, M.; Vanderborght, J.; Vereecken, H.

2014-12-01

Roots change their surrounding soil chemically, physically and biologically. This includes changes in soil moisture and solute concentration, the exudation of organic substances into the rhizosphere, increased growth of soil microorganisms, or changes in soil structure. The fate of water and solutes in the root zone is highly determined by these root-soil interactions. Mathematical models of soil-root systems in combination with non-invasive techniques able to characterize root systems are a promising tool to understand and predict the behaviour of water and solutes in the root zone. With respect to different fields of applications, predictive mathematical models can contribute to the solution of optimal control problems in plant recourse efficiency. This may result in significant gains in productivity, efficiency and environmental sustainability in various land use activities. Major challenges include the coupling of model parameters of the relevant processes with the surrounding environment such as temperature, nutrient concentration or soil water content. A further challenge is the mathematical description of the different spatial and temporal scales involved. This includes in particular the branched structures formed by root systems or the external mycelium of mycorrhizal fungi. Here, reducing complexity as well as bridging between spatial scales is required. Furthermore, the combination of experimental and mathematical techniques may advance the field enormously. Here, the use of root system, soil and rhizosphere models is presented through a number of modelling case studies, including image based modelling of phosphate uptake by a root with hairs, model-based optimization of root architecture for phosphate uptake from soil, upscaling of rhizosphere models, modelling root growth in structured soil, and the effect of root hydraulic architecture on plant water uptake efficiency and drought resistance.

Eco-geomorphic controls on slope stability

NASA Astrophysics Data System (ADS)

Hales, T.; Ford, C.; Hwang, T.; Vose, J.; Band, L.

2009-04-01

Vegetation controls soil-mantled landscape evolution primarily through growth of roots into soil and rock. Root-soil interactions affect the spatial distribution and rate of shallow landsliding and other hillslope processes. Yet the distribution and tensile strength of roots depends on a number of geomorphically-influenced parameters, including soil moisture. Our field-based study investigated the effects of topography on root distributions, tensile strengths, and cohesion. Systematic differences in plant species distribution and soil properties are found in the hollow-nose topography of soil-mantled landscapes; with hollows containing thick colluvial soils and mesic tree species and noses containing thinner, more differentiated soils and more xeric species. We investigated whether these topographic variations in geomorphic and ecologic properties affected the spatial distribution of root cohesion by measuring the distribution and tensile strength of roots from soil pits dug downslope of fifteen individual trees in the Coweeta Hydrologic Laboratory, North Carolina. Our soil pits were located to capture variance in plant species (10 species total), topographic positions (nose, hollow), and sizes (a range of DBH between 5 cm and 60 cm). Root tensile strengths showed little variance with different species, but showed strong differences as a function of topography, with nose roots stronger than hollow roots. Similarly, within species, root cellulose content was systematically greater in trees on nose positions compared to those in hollows. For all species, roots were concentrated close to the soil surface (at least 70% of biomass occurred within 50 cm of the surface) and variations in this pattern were primarily a function of topographic position. Hollow roots were more evenly distributed in the soil column than those on noses, yet trees located on noses had higher mean root cohesion than those in hollows because of a higher root tensile force. These data provide an empirical basis for the development of simple geomorphic transport laws that explicitly include vegetation.

Root growth, water uptake, and sap flow of winter wheat in response to different soil water conditions

NASA Astrophysics Data System (ADS)

Cai, Gaochao; Vanderborght, Jan; Langensiepen, Matthias; Schnepf, Andrea; Hüging, Hubert; Vereecken, Harry

2018-04-01

How much water can be taken up by roots and how this depends on the root and water distributions in the root zone are important questions that need to be answered to describe water fluxes in the soil-plant-atmosphere system. Physically based root water uptake (RWU) models that relate RWU to transpiration, root density, and water potential distributions have been developed but used or tested far less. This study aims at evaluating the simulated RWU of winter wheat using the empirical Feddes-Jarvis (FJ) model and the physically based Couvreur (C) model for different soil water conditions and soil textures compared to sap flow measurements. Soil water content (SWC), water potential, and root development were monitored noninvasively at six soil depths in two rhizotron facilities that were constructed in two soil textures: stony vs. silty, with each of three water treatments: sheltered, rainfed, and irrigated. Soil and root parameters of the two models were derived from inverse modeling and simulated RWU was compared with sap flow measurements for validation. The different soil types and water treatments resulted in different crop biomass, root densities, and root distributions with depth. The two models simulated the lowest RWU in the sheltered plot of the stony soil where RWU was also lower than the potential RWU. In the silty soil, simulated RWU was equal to the potential uptake for all treatments. The variation of simulated RWU among the different plots agreed well with measured sap flow but the C model predicted the ratios of the transpiration fluxes in the two soil types slightly better than the FJ model. The root hydraulic parameters of the C model could be constrained by the field data but not the water stress parameters of the FJ model. This was attributed to differences in root densities between the different soils and treatments which are accounted for by the C model, whereas the FJ model only considers normalized root densities. The impact of differences in root density on RWU could be accounted for directly by the physically based RWU model but not by empirical models that use normalized root density functions.

An index for plant water deficit based on root-weighted soil water content

NASA Astrophysics Data System (ADS)

Shi, Jianchu; Li, Sen; Zuo, Qiang; Ben-Gal, Alon

2015-03-01

Governed by atmospheric demand, soil water conditions and plant characteristics, plant water status is dynamic, complex, and fundamental to efficient agricultural water management. To explore a centralized signal for the evaluation of plant water status based on soil water status, two greenhouse experiments investigating the effect of the relative distribution between soil water and roots on wheat and rice were conducted. Due to the significant offset between the distributions of soil water and roots, wheat receiving subsurface irrigation suffered more from drought than wheat under surface irrigation, even when the arithmetic averaged soil water content (SWC) in the root zone was higher. A significant relationship was found between the plant water deficit index (PWDI) and the root-weighted (rather than the arithmetic) average SWC over root zone. The traditional soil-based approach for the estimation of PWDI was improved by replacing the arithmetic averaged SWC with the root-weighted SWC to take the effect of the relative distribution between soil water and roots into consideration. These results should be beneficial for scheduling irrigation, as well as for evaluating plant water consumption and root density profile.

Spatial variation of corn canopy temperature as dependent upon soil texture and crop rooting characteristics

NASA Technical Reports Server (NTRS)

Choudhury, B. J.

1983-01-01

A soil plant atmosphere model for corn (Zea mays L.) together with the scaling theory for soil hydraulic heterogeneity are used to study the sensitivity of spatial variation of canopy temperature to field averaged soil texture and crop rooting characteristics. The soil plant atmosphere model explicitly solves a continuity equation for water flux resulting from root water uptake, changes in plant water storage and transpirational flux. Dynamical equations for root zone soil water potential and the plant water storage models the progressive drying of soil, and day time dehydration and night time hydration of the crop. The statistic of scaling parameter which describes the spatial variation of soil hydraulic conductivity and matric potential is assumed to be independent of soil texture class. The field averaged soil hydraulic characteristics are chosen to be representative of loamy sand and clay loam soils. Two rooting characteristics are chosen, one shallow and the other deep rooted. The simulation shows that the range of canopy temperatures in the clayey soil is less than 1K, but for the sandy soil the range is about 2.5 and 5.0 K, respectively, for the shallow and deep rooted crops.

Slope Root biomechanical properties and their contribution to soil reinforcement in the Landslide-prone region, the Bailong River Basin

NASA Astrophysics Data System (ADS)

Wang, X.; Hong, M.; Huang, Z.; Zhao, Y.; Zhang, Y.

2016-12-01

The presence of vegetation increases soil burden stability along slopes and therefore reduces soil erosion. The contribution of the vegetation is due to the root's mechanical (reinforcing soil shear resistance) controls on superficial landslide. The study focused on the biotechnical characteristics of the root system of commonly grown shrub species in the Bailong River Basin, one of the most serious geo-hazards regions in China. The aim of this paper is to increase the understanding on slope root biomechanical properties of different shrubs species and their contribution to soil reinforcement. Field investigations were carried out to estimate the root density distribution with depth (root area ratio). Laboratory tests were conducted to measure the root tensile breaking force and the root tensile strength. Root tensile strength measurements were carried out on single root specimens and root area ratio was estimated analyzing the whole root system. The direct shear tests were used to quantify the soil mechanical reinforcement. The improvement of soil mechanical properties obtained by the presence of shrubs was estimated using two different models(the Fibrt Bundle Model and the Finite Element Model). The results indicates that the soil-root system shear strength of Robinia pseudoacacia Linn (L.), Populus simonii (L.), Olea europaea (L.), and Zanthoxylum bungeanum (L.) increment ranged from 62.4 to 26.3 kPa and its effect on the slope stability was significantly different. Robinia pseudoacacia Linn (L.) roots presented the highest tensile strength and soil reinforcement values. Similarly at each considered depth Robinia pseudoacacia Linn (L.) showed that the highest soil reinforcement effect (1461N) while Olea europaea (L.) presented the lowest soil reinforcement effect (1329N). The finite element model shows that the FoS of Zanthoxylum bungeanum (L.) is the largest of these plants when considering root additional cohesion. This research can provide a basic theory of afforestation mode in spatial distribution and hence control shallow landslide.

Modelling root reinforcement in shallow forest soils

USGS Publications Warehouse

Skaugset, Arne E.

1997-01-01

A hypothesis used to explain the relationship between timber harvesting and landslides is that tree roots add mechanical support to soil, thus increasing soil strength. Upon harvest, the tree roots decay which reduces soil strength and increases the risk of management -induced landslides. The technical literature does not adequately support this hypothesis. Soil strength values attributed to root reinforcement that are in the technical literature are such that forested sites can't fail and all high risk, harvested sites must fail. Both unstable forested sites and stable harvested sites exist, in abundance, in the real world thus, the literature does not adequately describe the real world. An analytical model was developed to calculate soil strength increase due to root reinforcement. Conceptually, the model is composed of a reinforcing element with high tensile strength, i.e. a conifer root, embedded in a material with little tensile strength, i.e. a soil. As the soil fails and deforms, the reinforcing element also deforms and stretches. The lateral deformation of the reinforcing element is treated analytically as a laterally loaded pile in a flexible foundation and the axial deformation is treated as an axially loaded pile. The governing differential equations are solved using finite-difference approximation techniques. The root reinforcement model was tested by comparing the final shape of steel and aluminum rods, parachute cord, wooden dowels, and pine roots in direct shear with predicted shapes from the output of the root reinforcement model. The comparisons were generally satisfactory, were best for parachute cord and wooden dowels, and were poorest for steel and aluminum rods. A parameter study was performed on the root reinforcement model which showed reinforced soil strength increased with increasing root diameter and soil depth. Output from the root reinforcement model showed a strain incompatibility between large and small diameter roots. The peak increase in soil strength attributed to roots was controlled by the small (<4mm) diameter root fraction. These results were used to calculate the effect of timber harvesting on a small, approximately 7.6 m3 (10 yd3), hypothetical landslide in a shallow, cohesionless, forest soil. The root reinforcement model predicted a post-harvest reduction in soil strength of 14 and 19 percent for a soil with and without 5 kPa (105 lbs/ft2) of cohesion, respectively.

Combining ecosystem service relationships and DPSIR framework to manage multiple ecosystem services.

PubMed

Xue, Hui; Li, Shiyu; Chang, Jie

2015-03-01

Ecosystem service (ES) relationship occurs due to two types of mechanisms: (1) interact directly or (2) interact through the impact of a shared factor. Identifying such mechanisms behind ES relationship within a single land-use/land-cover category and combining it with a system thinking framework is especially necessary for effective decision-making to manage multiple ESs generated by this land-use/land-cover. In this study, we use tea plantations in China to investigate mechanisms behind ES relationships. We find that tea production is positively correlated with four regulating services (i.e., carbon sequestration, soil N protection, soil P protection, and water conservation). Several regulating services, such as carbon sequestration and soil N, P, and K protection, have positive correlations with each other. Tea production, carbon sequestration, and soil retention are significantly correlated with local annual mean temperature and precipitation. We then establish driver-pressure-state-impact-response (DPSIR) framework for tea plantations, which has been widely used for environmental management issues. Integrating our findings of ES relationship into DPSIR framework, we can estimate how ES change is responding to two types of responses: response to control drivers and response to maintain or restore state. Scenario analysis showed that the responses to control drivers have a larger impact on ES. We discuss that DPSIR would favor managing multiple ES because it enables a more precise understanding of how ES interacts through the effects of factors from various hierarchies. Finally, we suggest integrating ES direct interaction into DPSIR framework. We think such integration could improve the ability of DPSIR framework to support decision-making in multiple ES management, specifically in at least three aspects: (1) favor to identify all possible response alternatives, (2) enable us to evaluate ES which cannot be assessed if without such combining, and (3) help to identify ecological leverage points where small management investment can yield substantial benefits.

[Effects of water storage in deeper soil layers on the root growth, root distribution and economic yield of cotton in arid area with drip irrigation under mulch].

PubMed

Luo, Hong-Hai; Zhang, Hong-Zhi; Zhang, Ya-Li; Zhang, Wang-Feng

2012-02-01

Taking cotton cultivar Xinluzao 13 as test material, a soil column culture expenment was conducted to study the effects of water storage in deeper (> 60 cm) soil layer on the root growth and its relations with the aboveground growth of the cultivar in arid area with drip irrigation under mulch. Two levels of water storage in 60-120 cm soil layer were installed, i. e., well-watered and no watering, and for each, the moisture content in 0-40 cm soil layer during growth period was controlled at two levels, i.e., 70% and 55% of field capacity. It was observed that the total root mass density of the cultivar and its root length density and root activity in 40-120 cm soil layer had significant positive correlations with the aboveground dry mass. When the moisture content in 0-40 cm soil layer during growth season was controlled at 70% of field capacity, the total root mass density under well-watered and no watering had less difference, but the root length density and root activity in 40-120 cm soil layer under well-watered condition increased, which enhanced the water consumption in deeper soil layer, increased the aboveground dry mass, and finally, led to an increased economic yield and higher water use efficiency. When the moisture content in 0-40 cm soil layer during growth season was controlled at 55% of field capacity and the deeper soil layer was well-watered, the root/shoot ratio and root length density in 40-120 cm soil layer and the root activity in 80-120 cm soil layer were higher, the water consumption in deeper soil layer increased, but it was still failed to adequately compensate for the negative effects of water deficit during growth season on the impaired growth of roots and aboveground parts, leading to a significant decrease in the economic yield, as compared with that at 70% of field capacity. Overall, sufficient water storage in deeper soil layer and a sustained soil moisture level of 65% -75% of field capacity during growth period could promote the downward growth of cotton roots, which was essential for achieving water-saving and high-yielding cultivation of cotton with drip irrigation under mulch.

Comparing root architectural models

NASA Astrophysics Data System (ADS)

Schnepf, Andrea; Javaux, Mathieu; Vanderborght, Jan

2017-04-01

Plant roots play an important role in several soil processes (Gregory 2006). Root architecture development determines the sites in soil where roots provide input of carbon and energy and take up water and solutes. However, root architecture is difficult to determine experimentally when grown in opaque soil. Thus, root architectural models have been widely used and been further developed into functional-structural models that are able to simulate the fate of water and solutes in the soil-root system (Dunbabin et al. 2013). Still, a systematic comparison of the different root architectural models is missing. In this work, we focus on discrete root architecture models where roots are described by connected line segments. These models differ (a) in their model concepts, such as the description of distance between branches based on a prescribed distance (inter-nodal distance) or based on a prescribed time interval. Furthermore, these models differ (b) in the implementation of the same concept, such as the time step size, the spatial discretization along the root axes or the way stochasticity of parameters such as root growth direction, growth rate, branch spacing, branching angles are treated. Based on the example of two such different root models, the root growth module of R-SWMS and RootBox, we show the impact of these differences on simulated root architecture and aggregated information computed from this detailed simulation results, taking into account the stochastic nature of those models. References Dunbabin, V.M., Postma, J.A., Schnepf, A., Pagès, L., Javaux, M., Wu, L., Leitner, D., Chen, Y.L., Rengel, Z., Diggle, A.J. Modelling root-soil interactions using three-dimensional models of root growth, architecture and function (2013) Plant and Soil, 372 (1-2), pp. 93 - 124. Gregory (2006) Roots, rhizosphere and soil: the route to a better understanding of soil science? European Journal of Soil Science 57: 2-12.

Barley root hair growth and morphology in soil, sand, and water solution media and relationship with nickel toxicity.

PubMed

Lin, Yanqing; Allen, Herbert E; Di Toro, Dominic M

2016-08-01

Barley, Hordeum vulgare (Doyce), was grown in the 3 media of soil, hydroponic sand solution (sand), and hydroponic water solution (water) culture at the same environmental conditions for 4 d. Barley roots were scanned, and root morphology was analyzed. Plants grown in the 3 media had different root morphology and nickel (Ni) toxicity response. Root elongations and total root lengths followed the sequence soil > sand > water. Plants grown in water culture were more sensitive to Ni toxicity and had greater root hair length than those from soil and sand cultures, which increased root surface area. The unit root surface area as root surface area per centimeter of length of root followed the sequence water > sand > soil and was found to be related with root elongation. Including the unit root surface area, the difference in root elongation and 50% effective concentration were diminished, and percentage of root elongations can be improved with a root mean square error approximately 10% for plants grown in different media. Because the unit root surface area of plants in sand culture is closer to that in soil culture, the sand culture method, not water culture, is recommended for toxicity parameter estimation. Environ Toxicol Chem 2016;35:2125-2133. © 2016 SETAC. © 2016 SETAC.

Physical root-soil interactions

NASA Astrophysics Data System (ADS)

Kolb, Evelyne; Legué, Valérie; Bogeat-Triboulot, Marie-Béatrice

2017-12-01

Plant root system development is highly modulated by the physical properties of the soil and especially by its mechanical resistance to penetration. The interplay between the mechanical stresses exerted by the soil and root growth is of particular interest for many communities, in agronomy and soil science as well as in biomechanics and plant morphogenesis. In contrast to aerial organs, roots apices must exert a growth pressure to penetrate strong soils and reorient their growth trajectory to cope with obstacles like stones or hardpans or to follow the tortuous paths of the soil porosity. In this review, we present the main macroscopic investigations of soil-root physical interactions in the field and combine them with simple mechanistic modeling derived from model experiments at the scale of the individual root apex.

Physical root-soil interactions.

PubMed

Kolb, Evelyne; Legué, Valérie; Bogeat-Triboulot, Marie-Béatrice

2017-11-16

Plant root system development is highly modulated by the physical properties of the soil and especially by its mechanical resistance to penetration. The interplay between the mechanical stresses exerted by the soil and root growth is of particular interest for many communities, in agronomy and soil science as well as in biomechanics and plant morphogenesis. In contrast to aerial organs, roots apices must exert a growth pressure to penetrate strong soils and reorient their growth trajectory to cope with obstacles like stones or hardpans or to follow the tortuous paths of the soil porosity. In this review, we present the main macroscopic investigations of soil-root physical interactions in the field and combine them with simple mechanistic modeling derived from model experiments at the scale of the individual root apex.

Fine Root Abundance and Dynamics of Stone Pine (Pinus cembra) at the Alpine Treeline Is Not Impaired by Self-shading.

PubMed

Kubisch, Petra; Leuschner, Christoph; Coners, Heinz; Gruber, Andreas; Hertel, Dietrich

2017-01-01

Low temperatures are crucial for the formation of the alpine treeline worldwide. Since soil temperature in the shade of tree canopies is lower than in open sites, it was assumed that self-shading may impair the trees' root growth performance. While experiments with tree saplings demonstrate root growth impairment at soil temperatures below 5-7°C, field studies exploring the soil temperature - root growth relationship at the treeline are missing. We recorded soil temperature and fine root abundance and dynamics in shaded and sun-exposed areas under canopies of isolated Pinus cembra trees at the alpine treeline. In contrast to the mentioned assumption, we found more fine root biomass and higher fine root growth in colder than in warmer soil areas. Moreover, colder areas showed higher fine root turnover and thus lower root lifespan than warmer places. We conclude that P. cembra balances enhanced fine root mortality in cold soils with higher fine root activity and by maintaining higher fine root biomass, most likely as a response to shortage in soil resource supply. The results from our study highlight the importance of in situ measurements on mature trees to understand the fine root response and carbon allocation pattern to the thermal growth conditions at the alpine treeline.

The inflow of Cs-137 in soil with root litter and root exudates of Scots pine

NASA Astrophysics Data System (ADS)

Shcheglov, Alexey; Tsvetnova, Olga; Popova, Evgenia

2017-04-01

In the model experiment on evaluation of Cs-137 inflow in the soil with litter of roots and woody plants root exudates on the example of soil and water cultures of Scots pine (Pinus sylvestris L.) was shown, that through 45 days after the deposit Cs-137 solution on pine needles (specific activity of solution was 3.718*106 Bk) of the radionuclide in all components of model systems has increased significantly: needles, small branches and trunk by Cs-137 surface contamination during the experiment; roots as a result of the internal distribution of the radionuclide in the plant; soil and soil solution due to the of receipt Cs-137 in the composition of root exudates and root litter. Over 99% of the total reserve of Cs-137 accumulated in the components of the soil and water systems, accounted for bodies subjected to external pollution (needles and small branches) and <0.5% - on the soil / soil solution, haven't been subjected to surface contamination. At the same contamination of soil and soil solution by Cs-137 in the model experiment more than a> 99.9% was due to root exudates

Can we manipulate root system architecture to control soil erosion?

NASA Astrophysics Data System (ADS)

Ola, A.; Dodd, I. C.; Quinton, J. N.

2015-09-01

Soil erosion is a major threat to soil functioning. The use of vegetation to control erosion has long been a topic for research. Much of this research has focused on the above-ground properties of plants, demonstrating the important role that canopy structure and cover plays in the reduction of water erosion processes. Less attention has been paid to plant roots. Plant roots are a crucial yet under-researched factor for reducing water erosion through their ability to alter soil properties, such as aggregate stability, hydraulic function and shear strength. However, there have been few attempts to specifically manipulate plant root system properties to reduce soil erosion. Therefore, this review aims to explore the effects that plant roots have on soil erosion and hydrological processes, and how plant root architecture might be manipulated to enhance its erosion control properties. We demonstrate the importance of root system architecture for the control of soil erosion. We also show that some plant species respond to nutrient-enriched patches by increasing lateral root proliferation. The erosional response to root proliferation will depend upon its location: at the soil surface dense mats of roots may reduce soil erodibility but block soil pores thereby limiting infiltration, enhancing runoff. Additionally, in nutrient-deprived regions, root hair development may be stimulated and larger amounts of root exudates released, thereby improving aggregate stability and decreasing erodibility. Utilizing nutrient placement at specific depths may represent a potentially new, easily implemented, management strategy on nutrient-poor agricultural land or constructed slopes to control erosion, and further research in this area is needed.

Unusual Root Canal Irrigation Solutions.

PubMed

Mohammadi, Zahed; Jafarzadeh, Hamid; Shalavi, Sousan; Kinoshita, Jun-Ichiro

2017-05-01

Microorganisms and their by-products play a critical role in pulp and periradicular pathosis. Therefore, one of the main purposes of root canal treatment is disinfection of the entire system of the canal. This aim may be obtained using mechanical preparation, chemical irrigation, and temporary medication of the canal. For this purpose, various irrigation solutions have been advocated. Common root canal irrigants, such as sodium hypochlorite, chlorhexidine, and a mixture of tetracycline, acid, and detergent have been extensively reviewed. The aim of this review was to address the less common newer root canal irrigation solutions, such as citric acid, maleic acid, electrochemically activated water, green tea, ozonated water, and SmearClear.

Maize varieties released in different eras have similar root length density distributions in the soil, which are negatively correlated with local concentrations of soil mineral nitrogen.

PubMed

Ning, Peng; Li, Sa; White, Philip J; Li, Chunjian

2015-01-01

Larger, and deeper, root systems of new maize varieties, compared to older varieties, are thought to have enabled improved acquisition of soil resources and, consequently, greater grain yields. To compare the spatial distributions of the root systems of new and old maize varieties and their relationships with spatial variations in soil concentrations of available nitrogen (N), phosphorus (P) and potassium (K), two years of field experiments were performed using six Chinese maize varieties released in different eras. Vertical distributions of roots, and available N, P and K in the 0-60 cm soil profile were determined in excavated soil monoliths at silking and maturity. The results demonstrated that new maize varieties had larger root dry weight, higher grain yield and greater nutrient accumulation than older varieties. All varieties had similar total root length and vertical root distribution at silking, but newer varieties maintained greater total root length and had more roots in the 30-60 cm soil layers at maturity. The spatial variation of soil mineral N (Nmin) in each soil horizon was larger than that of Olsen-P and ammonium-acetate-extractable K, and was inversely correlated with root length density (RLD), especially in the 0-20 cm soil layer. It was concluded that greater acquisition of mineral nutrients and higher yields of newer varieties were associated with greater total root length at maturity. The negative relationship between RLD and soil Nmin at harvest for all varieties suggests the importance of the spatial distribution of the root system for N uptake by maize.

Maize Varieties Released in Different Eras Have Similar Root Length Density Distributions in the Soil, Which Are Negatively Correlated with Local Concentrations of Soil Mineral Nitrogen

PubMed Central

Ning, Peng; Li, Sa; White, Philip J.; Li, Chunjian

2015-01-01

Larger, and deeper, root systems of new maize varieties, compared to older varieties, are thought to have enabled improved acquisition of soil resources and, consequently, greater grain yields. To compare the spatial distributions of the root systems of new and old maize varieties and their relationships with spatial variations in soil concentrations of available nitrogen (N), phosphorus (P) and potassium (K), two years of field experiments were performed using six Chinese maize varieties released in different eras. Vertical distributions of roots, and available N, P and K in the 0–60 cm soil profile were determined in excavated soil monoliths at silking and maturity. The results demonstrated that new maize varieties had larger root dry weight, higher grain yield and greater nutrient accumulation than older varieties. All varieties had similar total root length and vertical root distribution at silking, but newer varieties maintained greater total root length and had more roots in the 30–60 cm soil layers at maturity. The spatial variation of soil mineral N (Nmin) in each soil horizon was larger than that of Olsen-P and ammonium-acetate-extractable K, and was inversely correlated with root length density (RLD), especially in the 0–20 cm soil layer. It was concluded that greater acquisition of mineral nutrients and higher yields of newer varieties were associated with greater total root length at maturity. The negative relationship between RLD and soil Nmin at harvest for all varieties suggests the importance of the spatial distribution of the root system for N uptake by maize. PMID:25799291

Root-soil relationships and terroir

NASA Astrophysics Data System (ADS)

Tomasi, Diego

2015-04-01

Soil features, along with climate, are among the most important determinants of a succesful grape production in a certain area. Most of the studies, so far, investigated the above-ground vine response to differente edaphic and climate condition, but it is clearly not sufficient to explain the vine whole behaviour. In fact, roots represent an important part of the terroir system (soil-plant-atmosphere-man), and their study can provide better comprehension of vine responses to different environments. The root density and distribution, the ability of deep-rooting and regenerating new roots are good indicators of root well-being, and represents the basis for an efficient physiological activity of the root system. Root deepening and distribution are strongly dependent and sensitive on soil type and soil properties, while root density is affected mostly by canopy size, rootstock and water availability. According to root well-being, soil management strategies should alleviate soil impediments, improving aeration and microbial activity. Moreover, agronomic practices can impact root system performance and influence the above-ground growth. It is well known, for example, that the root system size is largely diminished by high planting densities. Close vine spacings stimulate a more effective utilization of the available soil, water and nutrients, but if the competition for available soil becomes too high, it can repress vine growth, and compromise vineyard longevity, productivity and reaction to growing season weather. Development of resilient rootstocks, more efficient in terms of water and nutrient uptake and capable of dealing with climate and soil extremes (drought, high salinity) are primary goals fore future research. The use of these rootstocks will benefit a more sustainable use of the soil resources and the preservation and valorisation of the terroir.

Can we manipulate root system architecture to control soil erosion?

NASA Astrophysics Data System (ADS)

Ola, A.; Dodd, I. C.; Quinton, J. N.

2015-03-01

Soil erosion is a major threat to soil functioning. The use of vegetation to control erosion has long been a topic for research. Much of this research has focused on the above ground properties of plants, demonstrating the important role that canopy structure and cover plays in the reduction of water erosion processes. Less attention has been paid to plant roots. Plant roots are a crucial yet under-researched factor for reducing water erosion through their ability to alter soil properties, such as aggregate stability, hydraulic function and shear strength. However, there have been few attempts to manipulate plant root system properties to reduce soil erosion. Therefore, this review aims to explore the effects that plant roots have on soil erosion and hydrological processes, and how plant root architecture might be manipulated to enhance its erosion control properties. We clearly demonstrate the importance of root system architecture for the control of soil erosion. We also demonstrate that some plant species respond to nutrient enriched patches by increasing lateral root proliferation. The soil response to root proliferation will depend upon its location: at the soil surface dense mats of roots may block soil pores thereby limiting infiltration, enhancing runoff and thus erosion; whereas at depth local increases in shear strength may reinforce soils against structural failure at the shear plane. Additionally, in nutrient deprived regions, root hair development may be stimulated and larger amounts of root exudates released, thereby improving aggregate stability and decreasing erodibility. Utilising nutrient placement at depth may represent a potentially new, easily implemented, management strategy on nutrient poor agricultural land or constructed slopes to control erosion, and further research in this area is needed.

Analysis of the relationship between rusty root incidences and soil properties in Panax ginseng

NASA Astrophysics Data System (ADS)

Wang, Q. X.; Xu, C. L.; Sun, H.; Ma, L.; Li, L.; Zhang, D. D.; Zhang, Y. Y.

2016-08-01

Rusty root is a serious problem in ginseng cultivation that limits the production and quality of ginseng worldwide. The Changbai Mountains are the most famous area for ginseng cultivation in China. To clarify the relationship between rusty root and soil characteristics, physico-chemical properties and enzymatic activities of soil collected from five different fields in the Changbai Mountains were analyzed and a controlled experiment carried out by increasing the concentration of Fe (II). Soil bulk density, moisture, total iron (Fe) and total manganese (Mn) concentrations and polyphenol oxidase (PPO) activity were significantly higher in rusty root than healthy root groups (two-sample test, P<0.05 or P<0.01), respectively. Pearson test showed that there was a significant positive correlation between rusty root index and pH, N, Fe, Mn, Al, Zn and Ca of soil samples collected from fields (P<0.05 or P<0.01), and a significant positive correlation also occurred between rusty root index and Fe (II) added to soil in Fe (II) inducing rusty root (P<0.01). Physiological factors may be very important roles giving rise to ginseng rusty root. Fe (III) reduction and Fe (II) oxidation could be important in increasing the incidence of rusty root. Soil moisture and bulk density of non-rhizosphere soil not attached to the root surface, and pH, N and PPO content of rhizosphere soils attached to the root surface were heavily involved in the reduction, oxidation and sequestration of metal ions.

Visualization of physico-chemical properties and microbial distribution in soil and root microenvironments

NASA Astrophysics Data System (ADS)

Eickhorst, Thilo; Schmidt, Hannes

2016-04-01

Plant root development is influenced by soil properties and environmental factors. In turn plant roots can also change the physico-chemical conditions in soil resulting in gradients between roots and the root-free bulk soil. By releasing a variety of substances roots facilitate microbial activities in their direct vicinity, the rhizosphere. The related microorganisms are relevant for various ecosystem functions in the root-soil interface such as nutrient cycling. It is therefore important to study the impact and dynamics of microorganisms associated to different compartments in root-soil interfaces on a biologically meaningful micro-scale. The analysis of microorganisms in their habitats requires microscopic observations of the respective microenvironment. This can be obtained by preserving the complex soil structure including the root system by resin impregnation resulting in high quality thin sections. The observation of such sections via fluorescence microscopy, SEM-EDS, and Nano-SIMS will be highlighted in this presentation. In addition, we will discuss the combination of this methodological approach with other imaging techniques such as planar optodes or non-invasive 3D X-ray CT to reveal the entire spatial structure and arrangement of soil particles and roots. When combining the preservation of soil structure via resin impregnation with 16S rRNA targeted fluorescence in situ hybridization (FISH) single microbial cells can be visualized, localized, and quantified in the undisturbed soil matrix including the root-soil interfaces. The simultaneous use of multiple oligonucleotide probes thereby provides information on the spatial distribution of microorganisms belonging to different phylogenetic groups. Results will be shown for paddy soils, where management induced physico-chemical dynamics (flooding and drying) as well as resulting microbial dynamics were visualized via correlative microscopy in resin impregnated samples.

Root development of winter wheat in erosion-affected soils depending on the position in a hummocky ground moraine soil landscape

NASA Astrophysics Data System (ADS)

Herbrich, Marcus; Gerke, Horst H.; Sommer, Michael

2017-04-01

The soil water uptake by crops is a key process in the hydrological cycle of agricultural ecosystems. In the arable hummocky ground moraines soil landscapes, an erosion-induced spatial differentiation of soil types has been established due to water and tillage erosion. Crop development may reflect soil landscape patterns and erosion-induced soil profile modifications, respectively, by increased or reduced plant and root growth. The objective was analyze field data of the root density and the root lengths of winter wheat for a non-eroded reference soil at the plateau (Albic Luvisol), an extremely eroded soil at steep midslope (Calcaric Regosol), and depositional soil at the footslope (Colluvic Regosol) using the minirhizotron technique. From 9/14 to 8/15 results indicate that root density values were highest for the Colluvic Regosol, followed by the Albic Luvisol and lowest for the Calcaric Regosol. In turn, the lowest maximum root penetration depth was found in the Colluvic Regosol because of the relatively high and fluctuating water table at this landscape position. The analyzed field root data revealed positive relations to above-ground plant parameters and corroborated the hypothesis that the crop root system was reflecting erosion-induced soil profile modifications. When accounting for the position-specific root development, the simulation of water and solute movement suggested differences in the balances as compared to assuming a spatially uniform development.

Interactions among roots, mycorrhizas and free-living microbial communities differentially impact soil carbon processes

DOE PAGES

Moore, Jessica A. M.; Jiang, Jiang; Patterson, Courtney M.; ...

2015-10-20

Plant roots, their associated microbial community and free-living soil microbes interact to regulate the movement of carbon from the soil to the atmosphere, one of the most important and least understood fluxes of terrestrial carbon. Our inadequate understanding of how plant-microbial interactions alter soil carbon decomposition may lead to poor model predictions of terrestrial carbon feedbacks to the atmosphere. Roots, mycorrhizal fungi and free-living soil microbes can alter soil carbon decomposition through exudation of carbon into soil. Exudates of simple carbon compounds can increase microbial activity because microbes are typically carbon limited. When both roots and mycorrhizal fungi are presentmore » in the soil, they may additively increase carbon decomposition. However, when mycorrhizas are isolated from roots, they may limit soil carbon decomposition by competing with free-living decomposers for resources. We manipulated the access of roots and mycorrhizal fungi to soil insitu in a temperate mixed deciduous forest. We added 13C-labelled substrate to trace metabolized carbon in respiration and measured carbon-degrading microbial extracellular enzyme activity and soil carbon pools. We used our data in a mechanistic soil carbon decomposition model to simulate and compare the effects of root and mycorrhizal fungal presence on soil carbon dynamics over longer time periods. Contrary to what we predicted, root and mycorrhizal biomass did not interact to additively increase microbial activity and soil carbon degradation. The metabolism of 13C-labelled starch was highest when root biomass was high and mycorrhizal biomass was low. These results suggest that mycorrhizas may negatively interact with the free-living microbial community to influence soil carbon dynamics, a hypothesis supported by our enzyme results. Our steady-state model simulations suggested that root presence increased mineral-associated and particulate organic carbon pools, while mycorrhizal fungal presence had a greater influence on particulate than mineral-associated organic carbon pools.Synthesis. Our results suggest that the activity of enzymes involved in organic matter decomposition was contingent upon root-mycorrhizal-microbial interactions. Using our experimental data in a decomposition simulation model, we show that root-mycorrhizal-microbial interactions may have longer-term legacy effects on soil carbon sequestration. Lastly, our study suggests that roots stimulate microbial activity in the short term, but contribute to soil carbon storage over longer periods of time.« less

Interactions among roots, mycorrhizas and free-living microbial communities differentially impact soil carbon processes

DOE Office of Scientific and Technical Information (OSTI.GOV)

Moore, Jessica A. M.; Jiang, Jiang; Patterson, Courtney M.

Plant roots, their associated microbial community and free-living soil microbes interact to regulate the movement of carbon from the soil to the atmosphere, one of the most important and least understood fluxes of terrestrial carbon. Our inadequate understanding of how plant-microbial interactions alter soil carbon decomposition may lead to poor model predictions of terrestrial carbon feedbacks to the atmosphere. Roots, mycorrhizal fungi and free-living soil microbes can alter soil carbon decomposition through exudation of carbon into soil. Exudates of simple carbon compounds can increase microbial activity because microbes are typically carbon limited. When both roots and mycorrhizal fungi are presentmore » in the soil, they may additively increase carbon decomposition. However, when mycorrhizas are isolated from roots, they may limit soil carbon decomposition by competing with free-living decomposers for resources. We manipulated the access of roots and mycorrhizal fungi to soil insitu in a temperate mixed deciduous forest. We added 13C-labelled substrate to trace metabolized carbon in respiration and measured carbon-degrading microbial extracellular enzyme activity and soil carbon pools. We used our data in a mechanistic soil carbon decomposition model to simulate and compare the effects of root and mycorrhizal fungal presence on soil carbon dynamics over longer time periods. Contrary to what we predicted, root and mycorrhizal biomass did not interact to additively increase microbial activity and soil carbon degradation. The metabolism of 13C-labelled starch was highest when root biomass was high and mycorrhizal biomass was low. These results suggest that mycorrhizas may negatively interact with the free-living microbial community to influence soil carbon dynamics, a hypothesis supported by our enzyme results. Our steady-state model simulations suggested that root presence increased mineral-associated and particulate organic carbon pools, while mycorrhizal fungal presence had a greater influence on particulate than mineral-associated organic carbon pools.Synthesis. Our results suggest that the activity of enzymes involved in organic matter decomposition was contingent upon root-mycorrhizal-microbial interactions. Using our experimental data in a decomposition simulation model, we show that root-mycorrhizal-microbial interactions may have longer-term legacy effects on soil carbon sequestration. Lastly, our study suggests that roots stimulate microbial activity in the short term, but contribute to soil carbon storage over longer periods of time.« less

[Distribution of fine root biomass of main planting tree species in Loess Plateau, China].

PubMed

Jian, Sheng-Qi; Zhao, Chuan-Yan; Fang, Shu-Min; Yu, Kai

2014-07-01

The distribution of fine roots of Pinus tabuliformis, Populus tomentosa, Prunus armeniaca, Robinia pseudoacacia, Hippophae rhamnoides, and Caragana korshinskii was investigated by using soil core method and the fine root was defined as root with diameter less than 2 mm. The soil moisture and soil properties were measured. The results showed that in the horizontal direction, the distribution of fine root biomass of P. tabuliformis presented a conic curve, and the fine root biomass of the other species expressed logarithm correlation. Radial roots developed, the fine root biomass were concentrated within the scope of the 2-3 times crown, indicating that trees extended their roots laterally to seek water farther from the tree. In the vertical direction, the fine root biomass decreased with the increasing soil depth. Fine root biomass had significant negative correlation with soil water content and bulk density, while significant positive correlation with organic matter and total N contents.

Soil Tillage Management Affects Maize Grain Yield by Regulating Spatial Distribution Coordination of Roots, Soil Moisture and Nitrogen Status.

PubMed

Wang, Xinbing; Zhou, Baoyuan; Sun, Xuefang; Yue, Yang; Ma, Wei; Zhao, Ming

2015-01-01

The spatial distribution of the root system through the soil profile has an impact on moisture and nutrient uptake by plants, affecting growth and productivity. The spatial distribution of the roots, soil moisture, and fertility are affected by tillage practices. The combination of high soil density and the presence of a soil plow pan typically impede the growth of maize (Zea mays L.).We investigated the spatial distribution coordination of the root system, soil moisture, and N status in response to different soil tillage treatments (NT: no-tillage, RT: rotary-tillage, SS: subsoiling) and the subsequent impact on maize yield, and identify yield-increasing mechanisms and optimal soil tillage management practices. Field experiments were conducted on the Huang-Huai-Hai plain in China during 2011 and 2012. The SS and RT treatments significantly reduced soil bulk density in the top 0-20 cm layer of the soil profile, while SS significantly decreased soil bulk density in the 20-30 cm layer. Soil moisture in the 20-50 cm profile layer was significantly higher for the SS treatment compared to the RT and NT treatment. In the 0-20 cm topsoil layer, the NT treatment had higher soil moisture than the SS and RT treatments. Root length density of the SS treatment was significantly greater than density of the RT and NT treatments, as soil depth increased. Soil moisture was reduced in the soil profile where root concentration was high. SS had greater soil moisture depletion and a more concentration root system than RT and NT in deep soil. Our results suggest that the SS treatment improved the spatial distribution of root density, soil moisture and N states, thereby promoting the absorption of soil moisture and reducing N leaching via the root system in the 20-50 cm layer of the profile. Within the context of the SS treatment, a root architecture densely distributed deep into the soil profile, played a pivotal role in plants' ability to access nutrients and water. An optimal combination of deeper deployment of roots and resource (water and N) availability was realized where the soil was prone to leaching. The correlation between the depletion of resources and distribution of patchy roots endorsed the SS tillage practice. It resulted in significantly greater post-silking biomass and grain yield compared to the RT and NT treatments, for summer maize on the Huang-Huai-Hai plain.

Soil Tillage Management Affects Maize Grain Yield by Regulating Spatial Distribution Coordination of Roots, Soil Moisture and Nitrogen Status

PubMed Central

Wang, Xinbing; Zhou, Baoyuan; Sun, Xuefang; Yue, Yang; Ma, Wei; Zhao, Ming

2015-01-01

The spatial distribution of the root system through the soil profile has an impact on moisture and nutrient uptake by plants, affecting growth and productivity. The spatial distribution of the roots, soil moisture, and fertility are affected by tillage practices. The combination of high soil density and the presence of a soil plow pan typically impede the growth of maize (Zea mays L.).We investigated the spatial distribution coordination of the root system, soil moisture, and N status in response to different soil tillage treatments (NT: no-tillage, RT: rotary-tillage, SS: subsoiling) and the subsequent impact on maize yield, and identify yield-increasing mechanisms and optimal soil tillage management practices. Field experiments were conducted on the Huang-Huai-Hai plain in China during 2011 and 2012. The SS and RT treatments significantly reduced soil bulk density in the top 0–20 cm layer of the soil profile, while SS significantly decreased soil bulk density in the 20–30 cm layer. Soil moisture in the 20–50 cm profile layer was significantly higher for the SS treatment compared to the RT and NT treatment. In the 0-20 cm topsoil layer, the NT treatment had higher soil moisture than the SS and RT treatments. Root length density of the SS treatment was significantly greater than density of the RT and NT treatments, as soil depth increased. Soil moisture was reduced in the soil profile where root concentration was high. SS had greater soil moisture depletion and a more concentration root system than RT and NT in deep soil. Our results suggest that the SS treatment improved the spatial distribution of root density, soil moisture and N states, thereby promoting the absorption of soil moisture and reducing N leaching via the root system in the 20–50 cm layer of the profile. Within the context of the SS treatment, a root architecture densely distributed deep into the soil profile, played a pivotal role in plants’ ability to access nutrients and water. An optimal combination of deeper deployment of roots and resource (water and N) availability was realized where the soil was prone to leaching. The correlation between the depletion of resources and distribution of patchy roots endorsed the SS tillage practice. It resulted in significantly greater post-silking biomass and grain yield compared to the RT and NT treatments, for summer maize on the Huang-Huai-Hai plain. PMID:26098548

Root distributions of Eurotia lanata in association with two species of agropyron on disturbed soils

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bonham, C.D.; Mack, S.E.

1990-12-01

Root distributions of Eurotia lanata in association with Agropyron inerme and A. smithii on soils that were mechanically disturbed were studied. Root diagrams and measurements were made for plants in competitive pairs from soils representing two depths of soil disturbance (30 cm and 1 m) and control areas. Soil disturbance was observed to reduce significantly depth of root penetration and root concentration of E. lanata. Root depth, maximum lateral spread of roots, and zone of root concentration of E. lanata plants were greatest in pure stand pairs. Eurotia lanata associated with A. inerme had the smallest root concentration. The areamore » occupied by E. lanata roots was 59% greater in pure stands than when found adjacent to A. inerme. Agropyron inerme apparently used more available soil water in the top 20 cm of soil than did the shrub and resulted in reduced root growth for E. lanata. On the other hand, the asexual reproductive strategy of A. smithii, where roots and rhizomes were distributed both vertically and laterally, enables the grass species to minimize detrimental effects of its association with E. lanata. The results have important implications for selection of species combinations to reseed disturbed soils in semiarid or arid environments. In particular, attention should be given to use of species that have differing specializations as indicated by their growth and morphology.« less

Dynamics of soil exploration by fine roots down to a depth of 10 m throughout the entire rotation in Eucalyptus grandis plantations

PubMed Central

Laclau, Jean-Paul; da Silva, Eder A.; Rodrigues Lambais, George; Bernoux, Martial; le Maire, Guerric; Stape, José L.; Bouillet, Jean-Pierre; Gonçalves, José L. de Moraes; Jourdan, Christophe; Nouvellon, Yann

2013-01-01

Although highly weathered soils cover considerable areas in tropical regions, little is known about exploration by roots in deep soil layers. Intensively managed Eucalyptus plantations are simple forest ecosystems that can provide an insight into the belowground growth strategy of fast-growing tropical trees. Fast exploration of deep soil layers by eucalypt fine roots may contribute to achieving a gross primary production that is among the highest in the world for forests. Soil exploration by fine roots down to a depth of 10 m was studied throughout the complete cycle in Eucalyptus grandis plantations managed in short rotation. Intersects of fine roots, less than 1 mm in diameter, and medium-sized roots, 1–3 mm in diameter, were counted on trench walls in a chronosequence of 1-, 2-, 3.5-, and 6-year-old plantations on a sandy soil, as well as in an adjacent 6-year-old stand growing in a clayey soil. Two soil profiles were studied down to a depth of 10 m in each stand (down to 6 m at ages 1 and 2 years) and 4 soil profiles down to 1.5–3.0 m deep. The root intersects were counted on 224 m2 of trench walls in 15 pits. Monitoring the soil water content showed that, after clear-cutting, almost all the available water stored down to a depth of 7 m was taken up by tree roots within 1.1 year of planting. The soil space was explored intensively by fine roots down to a depth of 3 m from 1 year after planting, with an increase in anisotropy in the upper layers throughout the rotation. About 60% of fine root intersects were found at a depth of more than 1 m, irrespective of stand age. The root distribution was isotropic in deep soil layers and kriged maps showed fine root clumping. A considerable volume of soil was explored by fine roots in eucalypt plantations on deep tropical soils, which might prevent water and nutrient losses by deep drainage after canopy closure and contribute to maximizing resource uses. PMID:23847645

Effects of soil water availability on water fluxes in winter wheat

NASA Astrophysics Data System (ADS)

Cai, G.; Vanderborght, J.; Langensiepen, M.; Vereecken, H.

2014-12-01

Quantifying soil water availability in water-limited ecosystems on plant water use continues to be a practical problem in agronomy. Transpiration which represents plant water demand is closely in relation to root water uptake in the root zone and sap flow in plant stems. However, few studies have been concentrated on influences of soil moisture on root water uptake and sap flow in crops. This study was undertaken to investigate (i) whether root water uptake and sap flow correlate with the transpiration estimated by the Penman-Monteith model for winter wheat(Triticum aestivum), and (ii) for which soil water potentials in the root zone, the root water uptake and sap flow rates in crop stems would be reduced. Therefore, we measured sap flow velocities by an improved heat-balance approach (Langensiepen et al., 2014), calculated crop transpiration by Penman-Monteith model, and simulated root water uptake by HYDRUS-1D on an hourly scale for different soil water status in winter wheat. In order to assess the effects of soil water potential on root water uptake and sap flow, an average soil water potential was calculated by weighting the soil water potential at a certain depth with the root length density. The temporal evolution of root length density was measured using horizontal rhizotubes that were installed at different depths.The results showed that root water uptake and sap flow matched well with the computed transpiration by Penman-Monteith model in winter wheat when the soil water potential was not limiting root water uptake. However, low soil water content restrained root water uptake, especially when soil water potential was lower than -90 kPa in the top soil. Sap flow in wheat was not affected by the observed soil water conditions, suggesting that stomatal conductance was not sensitive to soil water potentials. The effect of drought stress on root water uptake and sap flow in winter wheat was only investigated in a short time (after anthesis). Further research could focus on a long time (e.g. from vegetation to maturity) effect under different soil water conditions, such as irrigated, sheltered and normal status. Langensiepen, M., Kupisch, M., Graf, A., Schmidt, M. and Ewert, F., 2014. Improving the stem heat balance method for determining sap-flow in wheat. Agricultural and Forest Meteorology, 186: 34-42.

Bringing life to soil physical processes

NASA Astrophysics Data System (ADS)

Hallett, P. D.

2013-12-01

When Oklahoma's native prairie grass roots were replaced by corn, the greatest environmental (and social) disaster ever to hit America ensued. The soils lost structure, physical binding by roots was annihilated and when drought came the Great Dust Bowl commenced. This form of environmental disaster has repeated over history and although not always apparent, similar processes drive the degradation of seemingly productive farmland and forests. But just as negative impacts on biology are deleterious to soil physical properties, positive impacts could reverse these trends. In finding solutions to soil sustainability and food security, we should be able to exploit biological processes to improve soil physical properties. This talk will focus on a quantitative understanding of how biology changes soil physical behaviour. Like the Great Dust Bowl, it starts with reinforcement mechanisms by plant roots. We found that binding of soil by cereal (barley) roots within 5 weeks of planting can more than double soil shear strength, with greater plant density causing greater reinforcement. With time, however, the relative impact of root reinforcement diminishes due to root turnover and aging of the seedbed. From mechanical tests of individual roots, reasonable predictions of reinforcement by tree roots are possible with fibre bundle models. With herbaceous plants like cereals, however, the same parameters (root strength, stiffness, size and distribution) result in a poor prediction. We found that root type, root age and abiotic factors such as compaction and waterlogging affect mechanical behaviour, further complicating the understanding and prediction of root reinforcement. For soil physical stability, the interface between root and soil is an extremely important zone in terms of resistance of roots to pull-out and rhizosphere formation. Compounds analogous to root exudates have been found with rheological tests to initially decrease the shear stress where wet soils flow, but after decomposition of these exudates by microbes the shear stress increases. This suggests an initial dispersion, followed by aggregation of the soil, which explains the structural arrangement of soil particles in the rhizosphere observed by microscopy. Dispersion of soil minerals in the root zone is important to release bound nutrients from mineral surfaces. Using fracture mechanics we measured large impacts of biological exudates on the toughness and interparticle bond energy of soils. Now novel tests are being developed to quantify interparticle bonding by biological exudates on single and multiple particle contacts, including mechanical test specimens that can be inoculated with specific bacteria or fungi. This will allow for clay mineralogy, water potential and solution chemistry impacts on interparticle bonding to be quantified directly. Wettability experiments with the same samples measure hydrological properties such as contact angle. Basic information from these tests will help explain biological processes that drive soil structure formation and stabilisation, providing data for models of soil structure dynamics.

Mitigating nitrous oxide emissions from tea field soil using bioaugmentation with a Trichoderma viride biofertilizer.

PubMed

Xu, Shengjun; Fu, Xiaoqing; Ma, Shuanglong; Bai, Zhihui; Xiao, Runlin; Li, Yong; Zhuang, Guoqiang

2014-01-01

Land-use conversion from woodlands to tea fields in subtropical areas of central China leads to increased nitrous oxide (N2O) emissions, partly due to increased nitrogen fertilizer use. A field investigation of N2O using a static closed chamber-gas chromatography revealed that the average N2O fluxes in tea fields with 225 kg N ha(-1) yr(-1) fertilizer application were 9.4 ± 6.2 times higher than those of woodlands. Accordingly, it is urgent to develop practices for mitigating N2O emissions from tea fields. By liquid-state fermentation of sweet potato starch wastewater and solid-state fermentation of paddy straw with application of Trichoderma viride, we provided the tea plantation with biofertilizer containing 2.4 t C ha(-1) and 58.7 kg N ha(-1). Compared to use of synthetic N fertilizer, use of biofertilizer at 225 kg N ha(-1) yr(-1) significantly reduced N2O emissions by 33.3%-71.8% and increased the tea yield by 16.2%-62.2%. Therefore, the process of bioconversion/bioaugmentation tested in this study was found to be a cost-effective and feasible approach to reducing N2O emissions and can be considered the best management practice for tea fields.

Overestimation of Crop Root Biomass in Field Experiments Due to Extraneous Organic Matter

PubMed Central

Hirte, Juliane; Leifeld, Jens; Abiven, Samuel; Oberholzer, Hans-Rudolf; Hammelehle, Andreas; Mayer, Jochen

2017-01-01

Root biomass is one of the most relevant root parameters for studies of plant response to environmental change, soil carbon modeling or estimations of soil carbon sequestration. A major source of error in root biomass quantification of agricultural crops in the field is the presence of extraneous organic matter in soil: dead roots from previous crops, weed roots, incorporated above ground plant residues and organic soil amendments, or remnants of soil fauna. Using the isotopic difference between recent maize root biomass and predominantly C3-derived extraneous organic matter, we determined the proportions of maize root biomass carbon of total carbon in root samples from the Swiss long-term field trial “DOK.” We additionally evaluated the effects of agricultural management (bio-organic and conventional), sampling depth (0–0.25, 0.25–0.5, 0.5–0.75 m) and position (within and between maize rows), and root size class (coarse and fine roots) as defined by sieve mesh size (2 and 0.5 mm) on those proportions, and quantified the success rate of manual exclusion of extraneous organic matter from root samples. Only 60% of the root mass that we retrieved from field soil cores was actual maize root biomass from the current season. While the proportions of maize root biomass carbon were not affected by agricultural management, they increased consistently with soil depth, were higher within than between maize rows, and were higher in coarse (>2 mm) than in fine (≤2 and >0.5) root samples. The success rate of manual exclusion of extraneous organic matter from root samples was related to agricultural management and, at best, about 60%. We assume that the composition of extraneous organic matter is strongly influenced by agricultural management and soil depth and governs the effect size of the investigated factors. Extraneous organic matter may result in severe overestimation of recovered root biomass and has, therefore, large implications for soil carbon modeling and estimations of the climate change mitigation potential of soils. PMID:28298919

Root biomass, root/shoot ratio, and soil water content under perennial grasses with different nitrogen rates

USDA-ARS?s Scientific Manuscript database

Roots help in soil water and nutrient uptake and provide C input for soil C sequestration, but information on root biomass of bioenergy perennial grasses is lacking. Root/shoot ratios are used to estimate crop root biomass and C inputs, but the values for perennial grasses are also scanty. We examin...

Soil Penetration by Earthworms and Plant Roots—Mechanical Energetics of Bioturbation of Compacted Soils

PubMed Central

2015-01-01

We quantify mechanical processes common to soil penetration by earthworms and growing plant roots, including the energetic requirements for soil plastic displacement. The basic mechanical model considers cavity expansion into a plastic wet soil involving wedging by root tips or earthworms via cone-like penetration followed by cavity expansion due to pressurized earthworm hydroskeleton or root radial growth. The mechanical stresses and resulting soil strains determine the mechanical energy required for bioturbation under different soil hydro-mechanical conditions for a realistic range of root/earthworm geometries. Modeling results suggest that higher soil water content and reduced clay content reduce the strain energy required for soil penetration. The critical earthworm or root pressure increases with increased diameter of root or earthworm, however, results are insensitive to the cone apex (shape of the tip). The invested mechanical energy per unit length increase with increasing earthworm and plant root diameters, whereas mechanical energy per unit of displaced soil volume decreases with larger diameters. The study provides a quantitative framework for estimating energy requirements for soil penetration work done by earthworms and plant roots, and delineates intrinsic and external mechanical limits for bioturbation processes. Estimated energy requirements for earthworm biopore networks are linked to consumption of soil organic matter and suggest that earthworm populations are likely to consume a significant fraction of ecosystem net primary production to sustain their subterranean activities. PMID:26087130

Evaluation of the interaction between plant roots and preferential flow paths

NASA Astrophysics Data System (ADS)

Zhang, Yinghu; Niu, Jianzhi; Zhang, Mingxiang; Xiao, Zixing; Zhu, Weili

2017-04-01

Introduction Preferential flow causing environmental issues by carrying contaminants to the groundwater resources level, occurs throughout the world. Soil water flow and solute transportation via preferential flow paths with little resistance could bypass soil matrix quickly. It is necessary to characterize preferential flow phenomenon because of its understanding of ecological functions of soil, including the degradation of topsoil, the low activity of soil microorganisms, the loss of soil nutrients, and the serious source of pollution of groundwater resources (Brevik et al., 2015; Singh et al., 2015). Studies on the interaction between plant roots and soil water flow in response to preferential flow is promising increasingly. However, it is complicated to evaluate soil hydrology when plant roots are associated with the mechanisms of soil water flow and solute transportation, especially preferential flow (Ola et al., 2015). Root channels formed by living/decayed plant roots and root-soil interfaces affect soil hydrology (Tracy et al., 2011). For example, Jørgensen et al. (2002) stated that soil water flow was more obvious in soil profiles with plant roots than in soil profiles without plant roots. The present study was conducted to investigate the interaction between plant roots and soil water flow in response to preferential flow in stony soils. Materials and methods Field experiments: field dye tracing experiments centered on experimental plants (S. japonica Linn, P. orientalis (L.) Franco, and Q. dentata Thunb) were conducted to characterize the root length density, preferential flow paths (stained areas), and soil matrix (unstained areas). Brilliant Blue FCF (C.I. Food Blue 2) as dye solution (50 L) was applied to the experimental plots. Laboratory analyses: undisturbed soil columns (7-cm diameter, 10 cm high) obtained from soil depths of 0-20, 20-40, and 40-60 cm, respectively, were conducted with breakthrough curves experiments under different conditions maintaining (1) a constant hydraulic head of 1ṡ0 cm of water with various solution concentrations of 0ṡ5, 1ṡ0, and 1ṡ5 g L-1, and (2) a constant solution concentration of 1ṡ0 g L-1 with various hydraulic heads of 0ṡ5, 1ṡ0, and 1ṡ5 cm of water, and those columns were conducted under saturated and unsaturated soil conditions, respectively. The effluent samples were measured with an ultraviolet spectrometer subsystem to determine the relative concentration. The plant root-water interaction (PRWI) was recognized as an indicator of the influences of plant roots on soil water flow. Results Our study showed that (1) fine plant roots in preferential flow paths decreased with soil depth and was mostly recorded in the upper soil layers to a depth of 20 cm for all experimental plots. The root length density of preferential flow paths made up at least 50% of the total root length density at each soil depth; (2) preferential flow effects were most apparent on soil water flow at the 0-20-cm soil depth compared with the other depths (20-40 and 40-60 cm); (3) positive correlations between fine plant roots and the plant root-water interaction (PRWI) were observed. References Brevik EC, Cerdà A, Mataix-Solera J, Pereg L, Quinton JN, Six J, Van Oost K. 2015. The interdisciplinary nature of SOIL. SOIL 1: 117-129. DOI: 10.5194/soil-1-117-2015. Singh YP, Nayak AK, Sharma DK, Singh G, Mishra VK, Singh D. 2015. Evaluation of Jatropha curcas genotypes for rehabilitation of degraded sodic lands. Land Degradation & Development 26(5): 510-520. DOI: 10.1002/ldr.2398. Ola A, Dodd IC, Quinton JN. 2015. Can we manipulate root system architecture to control soil erosion? SOIL 1: 603-612. DOI: 10.5194/soild-2-265-2015. Tracy SR, Black CR, Roberts JA, Mooney SJ. 2011. Soil compaction: a review of past and present techniques for investigating effects on root growth. Journal of the Science of Food & Agriculture 91: 1528-1537. DOI: 10.1002/jsfa.4424. Jørgensen PR, Hoffmann M, Kistrup JP, Bryde C, Bossi R, Villholth KG. 2002. Preferential flow and pesticide transport in a clay-rich till: field, laboratory, and modeling analysis. Water Resources Research 38: 1246-1261. DOI: 10.1029/2001WR000494.

Identification of qSOR1, a major rice QTL involved in soil-surface rooting in paddy fields.

PubMed

Uga, Yusaku; Hanzawa, Eiko; Nagai, Shinsei; Sasaki, Kazuhiro; Yano, Masahiro; Sato, Tadashi

2012-01-01

Specific Indonesian lowland rice (Oryza sativa L.) cultivars elongate thick primary roots on the soil surface of paddy fields. To clarify the genetic factors controlling soil-surface rooting, we performed quantitative trait locus (QTL) analyses using 124 recombinant inbred lines (RILs) derived from a cross between Gemdjah Beton, an Indonesian lowland rice cultivar with soil-surface roots, and Sasanishiki, a Japanese lowland rice cultivar without soil-surface roots. These cultivars and the RILs were tested for soil-surface rooting in a paddy field. We identified four regions of chromosomes 3, 4, 6, and 7 that were associated with soil-surface rooting in the field. Among them, one major QTL was located on the long arm of chromosome 7. This QTL explained 32.5-53.6% of the total phenotypic variance across three field evaluations. To perform fine mapping of this QTL, we measured the basal root growth angle of crown roots at the seedling stage in seven BC(2)F(3) recombinant lines grown in small cups in a greenhouse. The QTL was mapped between markers RM21941 and RM21976, which delimit an 812-kb interval in the reference cultivar Nipponbare. We have designated this QTL qSOR1 (quantitative trait locus for SOIL SURFACE ROOTING 1).

In situ detection of tree root distribution and biomass by multi-electrode resistivity imaging.

PubMed

Amato, Mariana; Basso, Bruno; Celano, Giuseppe; Bitella, Giovanni; Morelli, Gianfranco; Rossi, Roberta

2008-10-01

Traditional methods for studying tree roots are destructive and labor intensive, but available nondestructive techniques are applicable only to small scale studies or are strongly limited by soil conditions and root size. Soil electrical resistivity measured by geoelectrical methods has the potential to detect belowground plant structures, but quantitative relationships of these measurements with root traits have not been assessed. We tested the ability of two-dimensional (2-D) DC resistivity tomography to detect the spatial variability of roots and to quantify their biomass in a tree stand. A high-resolution resistivity tomogram was generated along a 11.75 m transect under an Alnus glutinosa (L.) Gaertn. stand based on an alpha-Wenner configuration with 48 electrodes spaced 0.25 m apart. Data were processed by a 2-D finite-element inversion algorithm, and corrected for soil temperature. Data acquisition, inversion and imaging were completed in the field within 60 min. Root dry mass per unit soil volume (root mass density, RMD) was measured destructively on soil samples collected to a depth of 1.05 m. Soil sand, silt, clay and organic matter contents, electrical conductivity, water content and pH were measured on a subset of samples. The spatial pattern of soil resistivity closely matched the spatial distribution of RMD. Multiple linear regression showed that only RMD and soil water content were related to soil resistivity along the transect. Regression analysis of RMD against soil resistivity revealed a highly significant logistic relationship (n = 97), which was confirmed on a separate dataset (n = 67), showing that soil resistivity was quantitatively related to belowground tree root biomass. This relationship provides a basis for developing quick nondestructive methods for detecting root distribution and quantifying root biomass, as well as for optimizing sampling strategies for studying root-driven phenomena.

Single Plant Root System Modeling under Soil Moisture Variation

NASA Astrophysics Data System (ADS)

Yabusaki, S.; Fang, Y.; Chen, X.; Scheibe, T. D.

2016-12-01

A prognostic Virtual Plant-Atmosphere-Soil System (vPASS) model is being developed that integrates comprehensively detailed mechanistic single plant modeling with microbial, atmospheric, and soil system processes in its immediate environment. Three broad areas of process module development are targeted: Incorporating models for root growth and function, rhizosphere interactions with bacteria and other organisms, litter decomposition and soil respiration into established porous media flow and reactive transport models Incorporating root/shoot transport, growth, photosynthesis and carbon allocation process models into an integrated plant physiology model Incorporating transpiration, Volatile Organic Compounds (VOC) emission, particulate deposition and local atmospheric processes into a coupled plant/atmosphere model. The integrated plant ecosystem simulation capability is being developed as open source process modules and associated interfaces under a modeling framework. The initial focus addresses the coupling of root growth, vascular transport system, and soil under drought scenarios. Two types of root water uptake modeling approaches are tested: continuous root distribution and constitutive root system architecture. The continuous root distribution models are based on spatially averaged root development process parameters, which are relatively straightforward to accommodate in the continuum soil flow and reactive transport module. Conversely, the constitutive root system architecture models use root growth rates, root growth direction, and root branching to evolve explicit root geometries. The branching topologies require more complex data structures and additional input parameters. Preliminary results are presented for root model development and the vascular response to temporal and spatial variations in soil conditions.

L-Theanine Content and Related Gene Expression: Novel Insights into Theanine Biosynthesis and Hydrolysis among Different Tea Plant (Camellia sinensis L.) Tissues and Cultivars

PubMed Central

Liu, Zhi-Wei; Wu, Zhi-Jun; Li, Hui; Wang, Yong-Xin; Zhuang, Jing

2017-01-01

L-Theanine content has tissues and cultivars specificity in tea plant (Camellia sinensis L.), the correlations of theanine metabolic related genes expression profiles with theanine contents were explored in this study. L-theanine contents in the bud and 1st leaf, 2nd leaf, 3rd leaf, old leaf, stem, and lateral root were determined by HPLC from three C. sinensis cultivars, namely ‘Huangjinya’, ‘Anjibaicha’, and ‘Yingshuang’, respectively. The theanine contents in leaves and root of ‘Huangjinya’ were the highest, followed by ‘Anjibaicha’, and ‘Yingshuang’. The theanine contents in the leaves reduced as the leaf mature gradually, and in stem were the least. Seventeen genes encoding enzymes involved in theanine metabolism were identified from GenBank and our tea transcriptome database, including CsTS1, CsTS2, CsGS1, CsGS2, CsGOGAT-Fe, CsGOGAT-NAD(P)H, CsGDH1, CsGDH2, CsALT, CsSAMDC, CsADC, CsCuAO, CsPAO, CsNiR, CsNR, CsGGT1, and CsGGT3. The transcript profiles of those seventeen genes in the different tissues of three tea plant cultivars were analyzed comparatively. Among the different cultivars, the transcript levels of most selected genes in ‘Huangjinya’ were significantly higher than that in the ‘Anjibaicha’ and ‘Yingshuang’. Among the different tissues, the transcript levels of CsTS2, CsGS1, and CsGDH2 almost showed positive correlation with the theanine contents, while the other genes showed negative correlation with the theanine contents in most cases. The theanine contents showed correlations with related genes expression levels among cultivars and tissues of tea plant, and were determined by the integrated effect of the metabolic related genes. PMID:28439281

Fine Root Abundance and Dynamics of Stone Pine (Pinus cembra) at the Alpine Treeline Is Not Impaired by Self-shading

PubMed Central

Kubisch, Petra; Leuschner, Christoph; Coners, Heinz; Gruber, Andreas; Hertel, Dietrich

2017-01-01

Low temperatures are crucial for the formation of the alpine treeline worldwide. Since soil temperature in the shade of tree canopies is lower than in open sites, it was assumed that self-shading may impair the trees’ root growth performance. While experiments with tree saplings demonstrate root growth impairment at soil temperatures below 5–7°C, field studies exploring the soil temperature – root growth relationship at the treeline are missing. We recorded soil temperature and fine root abundance and dynamics in shaded and sun-exposed areas under canopies of isolated Pinus cembra trees at the alpine treeline. In contrast to the mentioned assumption, we found more fine root biomass and higher fine root growth in colder than in warmer soil areas. Moreover, colder areas showed higher fine root turnover and thus lower root lifespan than warmer places. We conclude that P. cembra balances enhanced fine root mortality in cold soils with higher fine root activity and by maintaining higher fine root biomass, most likely as a response to shortage in soil resource supply. The results from our study highlight the importance of in situ measurements on mature trees to understand the fine root response and carbon allocation pattern to the thermal growth conditions at the alpine treeline. PMID:28469633

Soil zymography - A novel technique for mapping enzyme activity in the rhizosphere

NASA Astrophysics Data System (ADS)

Spohn, Marie

2014-05-01

The effect plant roots on microbial activity in soil at the millimeter scale is poorly understood. One reason for this is that spatially explicit methods for the study of microbial activity in soil are limited. Here we present a quantitative in situ technique for mapping the distribution of exoenzymes in soil along with some results about the effects of roots on exoenzyme activity in soil. In the first study we showed that both acid and alkaline phosphatase activity were up to 5.4-times larger in the rhizosphere of Lupinus albus than in the bulk soil. While acid phosphatase activity (produced by roots and microorganisms) was closely associated with roots, alkaline phosphatase activity (produced only by microorganisms) was more widely distributed, leading to a 2.5-times larger area of activity of alkaline than of acid phosphatase. These results indicate a spatial differentiation of different ecophysiological groups of organic phosphorus mineralizing organisms in the rhizosphere which might alleviate a potential competition for phosphorus between them. In a second study cellulase, chitinase and phosphatase activities were analyzed in the presence of living Lupinus polyphyllus roots and dead/dying roots (in the same soils 10, 20 and 30 days after cutting the L. polyphyllus shoots). The activity of all three enzymes was 9.0 to 13.9-times higher at the living roots compared to the bulk soil. Microhotspots of cellulase, chitinase and phosphatase activity in the soil were found up to 60 mm away from the living roots. 10 days after shoot cutting, the areas of high activities of cellulase and phosphatase activity were extend up to 55 mm away from the next root, while the extension of the area of chitinase activity did not change significantly. At the root, cellulase and chitinase activity increased first at the root tips after shoot cutting and showed maximal activity 20 days after shoot cutting. The number and activity of microhotspots of chitinase activity was maximal 10 days after shoot cutting and decreased thereafter. In conclusion, the study showed that fresh root detritus stimulates enzyme activities much stronger than living roots, probably because of the high pulse input of C and N from dying roots compared to slow continuous release of rhizodeposits. Taken together, soil zymography is a very promising novel technique to gain insights the effects of roots on the spatial and temporal dynamic of exoenzyme activity in soil. References Spohn, M., Carminati, A., Kuzyakov, Y. (2013). Zymography - A novel in situ method for mapping distribution of enzyme activity in soil. Soil Biology and Biochemistry 58, 275-280. Spohn, M., Kuzyakov, Y. (2013): Distribution of microbial- and root- derived phosphatase activities in the rhizosphere depending on P availability and C allocation - Coupling soil zymography with 14C imaging. Soil Biology and Biochemistry 67, 106-113. Spohn, M., Kuzyakov, Y. (accepted): Spatial and temporal dynamics of hotspots of enzyme activity as affected by living and dead roots - A soil zymography analysis. Plant and Soil

Soil strength and macropore volume limit root elongation rates in many UK agricultural soils.

PubMed

Valentine, Tracy A; Hallett, Paul D; Binnie, Kirsty; Young, Mark W; Squire, Geoffrey R; Hawes, Cathy; Bengough, A Glyn

2012-07-01

Simple indicators of crop and cultivar performance across a range of soil types and management are needed for designing and testing sustainable cropping practices. This paper determined the extent to which soil chemical and physical properties, particularly soil strength and pore-size distribution influences root elongation in a wide range of agricultural top soils, using a seedling-based indicator. Intact soil cores were sampled from the topsoil of 59 agricultural fields in Scotland, representing a wide geographic spread, range of textures and management practices. Water release characteristics, dry bulk density and needle penetrometer resistance were measured on three cores from each field. Soil samples from the same locations were sieved, analysed for chemical characteristics, and packed to dry bulk density of 1.0 g cm(-3) to minimize physical constraints. Root elongation rates were determined for barley seedlings planted in both intact field and packed soil cores at a water content close to field capacity (-20 kPa matric potential). Root elongation in field soil was typically less than half of that in packed soils. Penetrometer resistance was typically between 1 and 3 MPa for field soils, indicating the soils were relatively hard, despite their moderately wet condition (compared with <0.2 MPa for packed soil). Root elongation was strongly linked to differences in physical rather than chemical properties. In field soil root elongation was related most closely to the volume of soil pores between 60 µm and 300 µm equivalent diameter, as estimated from water-release characteristics, accounting for 65.7 % of the variation in the elongation rates. Root elongation rate in the majority of field soils was slower than half of the unimpeded (packed) rate. Such major reductions in root elongation rates will decrease rooting volumes and limit crop growth in soils where nutrients and water are scarce.

Differential priming of soil carbon driven by soil depth and root impacts on carbon availability

DOE Office of Scientific and Technical Information (OSTI.GOV)

de Graaff, Marie-Anne; Jastrow, Julie D.; Gillette, Shay

2013-11-15

Enhanced root-exudate inputs can stimulate decomposition of soil carbon (C) by priming soil microbial activity, but the mechanisms controlling the magnitude and direction of the priming effect remain poorly understood. With this study we evaluated how differences in soil C availability affect the impact of simulated root exudate inputs on priming. We conducted a 60-day laboratory incubation with soils collected (60 cm depth) from under six switchgrass (Panicum virgatum) cultivars. Differences in specific root length (SRL) among cultivars were expected to result in small differences in soil C inputs and thereby create small differences in the availability of recent labilemore » soil C; whereas soil depth was expected to create large overall differences in soil C availability. Soil cores from under each cultivar (roots removed) were divided into depth increments of 0–10, 20–30, and 40–60 cm and incubated with addition of either: (1) water or (2) 13C-labeled synthetic root exudates (0.7 mg C/g soil). We measured CO2 respiration throughout the experiment. The natural difference in 13C signature between C3 soils and C4 plants was used to quantify cultivar-induced differences in soil C availability. Amendment with 13C-labeled synthetic root-exudate enabled evaluation of SOC priming. Our experiment produced three main results: (1) switchgrass cultivars differentially influenced soil C availability across the soil profile; (2) small differences in soil C availability derived from recent root C inputs did not affect the impact of exudate-C additions on priming; but (3) priming was greater in soils from shallow depths (relatively high total soil C and high ratio of labile-to-stable C) compared to soils from deep depths (relatively low total soil C and low ratio of labile-to-stable C). These findings suggest that the magnitude of the priming effect is affected, in part, by the ratio of root exudate C inputs to total soil C and that the impact of changes in exudate inputs on the priming of SOC is regulated differently in surface soil compared to subsoil.« less

Measuring and Modeling Root Distribution and Root Reinforcement in Forested Slopes for Slope Stability Calculations

NASA Astrophysics Data System (ADS)

Cohen, D.; Giadrossich, F.; Schwarz, M.; Vergani, C.

2016-12-01

Roots provide mechanical anchorage and reinforcement of soils on slopes. Roots also modify soil hydrological properties (soil moisture content, pore-water pressure, preferential flow paths) via subsurface flow path associated with root architecture, root density, and root-size distribution. Interactions of root-soil mechanical and hydrological processes are an important control of shallow landslide initiation during rainfall events and slope stability. Knowledge of root-distribution and root strength are key components to estimate slope stability in vegetated slopes and for the management of protection forest in steep mountainous area. We present data that show the importance of measuring root strength directly in the field and present methods for these measurements. These data indicate that the tensile force mobilized in roots depends on root elongation (a function of soil displacement), root size, and on whether roots break in tension of slip out of the soil. Measurements indicate that large lateral roots that cross tension cracks at the scarp are important for slope stability calculations owing to their large tensional resistance. These roots are often overlooked and when included, their strength is overestimated because extrapolated from measurements on small roots. We present planned field experiments that will measure directly the force held by roots of different sizes during the triggering of a shallow landslide by rainfall. These field data are then used in a model of root reinforcement based on fiber-bundle concepts that span different spacial scales, from a single root to the stand scale, and different time scales, from timber harvest to root decay. This model computes the strength of root bundles in tension and in compression and their effect on soil strength. Up-scaled to the stand the model yields the distribution of root reinforcement as a function of tree density, distance from tree, tree species and age with the objective of providing quantitative estimates of tree root reinforcement for best management practice of protection forests.

Unraveling the hydrodynamics of split root water uptake experiments using CT scanned root architectures and three dimensional flow simulations

PubMed Central

Koebernick, Nicolai; Huber, Katrin; Kerkhofs, Elien; Vanderborght, Jan; Javaux, Mathieu; Vereecken, Harry; Vetterlein, Doris

2015-01-01

Split root experiments have the potential to disentangle water transport in roots and soil, enabling the investigation of the water uptake pattern of a root system. Interpretation of the experimental data assumes that water flow between the split soil compartments does not occur. Another approach to investigate root water uptake is by numerical simulations combining soil and root water flow depending on the parameterization and description of the root system. Our aim is to demonstrate the synergisms that emerge from combining split root experiments with simulations. We show how growing root architectures derived from temporally repeated X-ray CT scanning can be implemented in numerical soil-plant models. Faba beans were grown with and without split layers and exposed to a single drought period during which plant and soil water status were measured. Root architectures were reconstructed from CT scans and used in the model R-SWMS (root-soil water movement and solute transport) to simulate water potentials in soil and roots in 3D as well as water uptake by growing roots in different depths. CT scans revealed that root development was considerably lower with split layers compared to without. This coincided with a reduction of transpiration, stomatal conductance and shoot growth. Simulated predawn water potentials were lower in the presence of split layers. Simulations showed that this was related to an increased resistance to vertical water flow in the soil by the split layers. Comparison between measured and simulated soil water potentials proved that the split layers were not perfectly isolating and that redistribution of water from the lower, wetter compartments to the drier upper compartments took place, thus water losses were not equal to the root water uptake from those compartments. Still, the layers increased the resistance to vertical flow which resulted in lower simulated collar water potentials that led to reduced stomatal conductance and growth. PMID:26074935

Effect of soil water content on spatial distribution of root exudates and mucilage in the rhizosphere

NASA Astrophysics Data System (ADS)

Holz, Maire; Zarebanadkouki, Mohsen; Kuzyakov, Yakov; Carminati, Andrea

2016-04-01

Water and nutrients are expected to become the major factors limiting food production. Plant roots employ various mechanisms to increase the access to these limited soil resources. Low molecular root exudates released into the rhizosphere increase nutrient availability, while mucilage improves water availability under low moisture conditions. However, studies on the spatial distribution and quantification of exudates in soil are scarce. Our aim was therefore to quantify and visualize root exudates and mucilage distribution around growing roots using neutron radiography and 14C imaging at different levels of water stress. Maize plants were grown in rhizotrons filled with a silty soil and were exposed to varying soil conditions, from optimal to dry. Mucilage distribution around the roots was estimated from the profiles of water content in the rhizosphere - note that mucilage increases the soil water content. The profiles of water content around different root types and root ages were measured with neutron radiography. Rhizosphere extension was approx. 0.7 mm and did not differ between wet and dry treatments. However, water content (i.e. mucilage concentration) in the rhizosphere of plants grown in dry soils was higher than for plants grown under optimal conditions. This effect was particularly pronounced near the tips of lateral roots. The higher water contents near the root are explained as the water retained by mucilage. 14C imaging of root after 14CO2 labeling of shoots (Pausch and Kuzyakov 2011) was used to estimate the distribution of all rhizodeposits. Two days after labelling, 14C distribution was measured using phosphor-imaging. To quantify 14C in the rhizosphere a calibration was carried out by adding given amounts of 14C-glucose to soil. Plants grown in wet soil transported a higher percentage of 14C to the roots (14Croot/14Cshoot), compared to plants grown under dry conditions (46 vs. 36 %). However, the percentage of 14C allocated from roots to rhizosphere (14Crhizosphere/14Croot) was double in plants grown under dry conditions (0.43 vs. 0.75 %). Plants grown in wet soils showed a faster root growth (1.4 cm d-1) compared to plants in dry soil (1 cm d-1). Compared to the results with neutron radiography, rhizosphere extension of 14C was generally higher and strongly depended on root type: it was 2 mm for main roots and 1 mm for lateral roots. This indicates that low molecular exudates diffuse further into the soil than mucilage. As for mucilage, concentration of 14C was higher in the rhizosphere of plants grown under dry conditions. This observation can be explained by: (a) higher allocation of 14C from roots to rhizosphere in dry soils, (b) a fast diffusion of exudates in wet soils, and (c) faster root growth in wet soils, which results in lower exudation per root length. In summary, the combination of neutron radiography and 14C imaging was successfully used to visualize and to quantify the distribution of mucilage and root exudates in the rhizosphere of plants grown in soil. The high concentration of root exudates in rhizosphere under dry conditions might be strategy of plants to increase their water and nutrient availability unfavorable conditions.

Influence of cultural practices on edaphic factors related to root disease in Pinus nursery seedlings

Treesearch

J Juzwik; K. M. Gust; R. R. Allmaras

1999-01-01

Conifer seedlings grown in bare-root nurseries are frequently damaged and destroyed by soil-borne pathogenic fungi that cause root rot. Relationships between nursery cultural practices, soils characteristics, and populations of potential pathogens in the soil were examined in three bare-root tree nurseries in the midwestern USA. Soil-borne populations of ...

Assessment of grass root effects on soil piping in sandy soils using the pinhole test

NASA Astrophysics Data System (ADS)

Bernatek-Jakiel, Anita; Vannoppen, Wouter; Poesen, Jean

2017-04-01

Soil piping is a complex land degradation process, which involves the hydraulic removal of soil particles by subsurface flow. This process is frequently underestimated and omitted in most soil erosion studies. However, during the last decades several studies reported the importance of soil piping in various climatic zones and for a wide range of soil types. Compared to sheet, rill and gully erosion, very few studies focused on the factors controlling piping and, so far, there is no research study dealing with the effects of plant roots on piping susceptibility of soils having a low cohesion. The objective of this study is therefore to assess the impact of grass root density (RD) on soil piping in sandy soils using the pinhole test. The pinhole test involves a water flow passing through a hole of 1 mm diameter in a soil specimen (sampled using a metal ring with a diameter of 5 cm and a length of 8 cm), under varying hydraulic heads (50 mm, 180 mm, 380 mm and 1020 mm; Nadal-Romero et al., 2011). To provide a quantitative assessment piping susceptibility of the soil sample, the pipeflow discharge (cm3 s-1) and the sediment discharge (g s-1) were measured every minute during a five minute test. Bare and root-permeated samples were tested, using a sandy soil with a sand, silt, clay content of respectively, 94%, 4% and 2%. The root-permeated topsoil samples were taken in field plots sown with a mixture of grasses with fibrous roots. All soil samples were placed on a sandbox with a 100 mm head for 24 hours to ensure a similar water content for all samples. In total, 67 pinhole tests (lasting 5 minutes each) were conducted, i.e. 43 root-permeated soil samples with RD ranging from 0.01 to 0.93 kg m-3 and 24 root-free soil samples as a reference. Clear piping erosion could be observed in 65% of the root-free soil samples, whereas only 17% of rooted soil samples revealed clear piping erosion during the tests. Statistical analyses show that there is a negative correlation (-0.41, p < 0.05) between RD and sediment discharge. Mean pipeflow discharge was 1.4 times larger for the root-free samples compared to the root-permeated samples, while mean sediment discharge was 3 times higher for the root-free samples compared to the rooted samples. This indicates that the presence of fibrous roots in topsoils decreases the susceptibility to soil piping significantly. Furthermore, a positive correlation between the hydraulic head (50-1020 mm) and sediment discharge was observed. Overall, our results suggest that root density is a highly relevant factor for decreasing the soil piping erosion rates in the sandy topsoils. The presence of even very low root densities (< 1 kg m3) decrease pipeflow and sediment discharge. A. Bernatek-Jakiel is supported by the ETIUDA doctoral scholarship (UMO-2015/16/T/ST10/00505) financed by the National Science Centre of Poland. Reference: Nadal-Romero, E., Verachtert, E., Maes, R., Poesen, J., 2011. Quantitative assessment of the piping erosion susceptibility of loess-derived soil horizons using the pinhole test. Geomorphology 135, 66-79.

Transversely Excited Atmospheric CO2 Laser-Induced Plasma Spectroscopy for the Detection of Heavy Metals in Soil

NASA Astrophysics Data System (ADS)

Khumaeni, A.; Sugito, H.; Setia Budi, W.; Yoyo Wardaya, A.

2018-01-01

A rapid detection of heavy metals in soil was presented by the metal-assisted gas plasma method using specific characteristics of a pulsed, transversely excited atmospheric (TEA) CO2 laser. The soil particles were placed in a hole made of acrylic plate. The sample was covered by a to prevent the soil particles from being blown off. The mesh also functioned to initiate a luminous plasma. When a TEA CO2 laser (1500 mJ, 200 ns) was focused on the soil sample, passing through the metal mesh, some of the laser energy was used to generate the gas plasma on the mesh surface, and the remaining laser energy was employed to ablate the soil particles. The fine, ablated soil particles moved into the gas plasma region to be dissociated and excited. Using this technique, analysis can be made with reduced sample pretreatment, and therefore a rapid analysis can be performed efficiently. The results proved that the signal to noise ratio (S/N) of the emission spectral lines is much better for the case of the present method (mesh method) compared to the case of standard laser-induced breakdown spectroscopy using the pellet method. Rapid detection of heavy metal elements in soil has been successfully carried out. The detection limits of Cu and Hg in soil were estimated to be 3 and 10 mg/kg, respectively. The present method has good potential for rapid and sensitive detection of heavy metals in soil samples.

Plasticity of rhizosphere hydraulic properties as a key for efficient utilization of scarce resources

PubMed Central

Carminati, Andrea; Vetterlein, Doris

2013-01-01

Background It is known that the soil near roots, the so-called rhizosphere, has physical and chemical properties different from those of the bulk soil. Rhizosphere properties are the result of several processes: root and soil shrinking/swelling during drying/wetting cycles, soil compaction by root growth, mucilage exuded by root caps, interaction of mucilage with soil particles, mucilage shrinking/swelling and mucilage biodegradation. These processes may lead to variable rhizosphere properties, i.e. the presence of air-filled gaps between soil and roots; water repellence in the rhizosphere caused by drying of mucilage around the soil particles; or water accumulation in the rhizosphere due to the high water-holding capacity of mucilage. The resulting properties are not constant in time but they change as a function of soil condition, root growth rate and mucilage age. Scope We consider such a variability as an expression of rhizosphere plasticity, which may be a strategy for plants to control which part of the root system will have a facilitated access to water and which roots will be disconnected from the soil, for instance by air-filled gaps or by rhizosphere hydrophobicity. To describe such a dualism, we suggest classifying rhizosphere into two categories: class A refers to a rhizosphere covered with hydrated mucilage that optimally connects roots to soil and facilitates water uptake from dry soils. Class B refers to the case of air-filled gaps and/or hydrophobic rhizosphere, which isolate roots from the soil and may limit water uptake from the soil as well water loss to the soil. The main function of roots covered by class B will be long-distance transport of water. Outlook This concept has implications for soil and plant water relations at the plant scale. Root water uptake in dry conditions is expected to shift to regions covered with rhizosphere class A. On the other hand, hydraulic lift may be limited in regions covered with rhizosphere class B. New experimental methods need to be developed and applied to different plant species and soil types, in order to understand whether such dualism in rhizosphere properties is an important mechanism for efficient utilization of scarce resources and drought tolerance. PMID:23235697

Hydraulic Redistribution: A Modeling Perspective

NASA Astrophysics Data System (ADS)

Daly, E.; Verma, P.; Loheide, S. P., III

2014-12-01

Roots play a key role in the soil water balance. They extract and transport water for transpiration, which usually represents the most important soil water loss in vegetated areas, and can redistribute soil water, thereby increasing transpiration rates and enhancing root nutrient uptake. We present here a two-dimensional model capable of describing two key aspects of root water uptake: root water compensation and hydraulic redistribution. Root water compensation is the ability of root systems to respond to the reduction of water uptake from areas of the soil with low soil water potential by increasing the water uptake from the roots in soil parts with higher water potential. Hydraulic redistribution is a passive transfer of water through the root system from areas of the soil with greater water potential to areas with lower water potential. Both mechanisms are driven by gradients of water potential in the soil and the roots. The inclusion of root water compensation and hydraulic redistribution in models can be achieved by describing root water uptake as a function of the difference in water potential between soil and root xylem. We use a model comprising the Richards equation for the water flow in variably saturated soils and the Darcy's equation for the water flow in the xylem. The two equations are coupled via a sink term, which is assumed to be proportional to the difference between soil and xylem water potentials. The model is applied in two case studies to describe vertical and horizontal hydraulic redistribution and the interaction between vegetation with different root depths. In the case of horizontal redistribution, the model is used to reproduce the fluxes of water across the root system of a tree subjected to uneven irrigation. This example can be extended to situations when only part of the root system has access to water, such as vegetation near creeks, trees at the edge of forests, and street trees in urban areas. The second case is inspired by recent agro-ecosystems experiments that combined different vegetation species to increase crop yield. The presence of deep rooted plants (nursing species) near shallow rooted crops (nursed species) enhanced crop growth thanks to vertical and horizontal hydraulic redistribution. The model is able to reproduce the patterns of water redistribution observed in this scenario.

Plant exudates may stabilize or weaken soil depending on species, origin and time

PubMed Central

Naveed, M.; Brown, L. K.; Raffan, A. C.; George, T. S.; Bengough, A. G.; Roose, T.; Sinclair, I.; Koebernick, N.; Cooper, L.; Hackett, C. A.

2017-01-01

Summary We hypothesized that plant exudates could either gel or disperse soil depending on their chemical characteristics. Barley (Hordeum vulgare L. cv. Optic) and maize (Zea mays L. cv. Freya) root exudates were collected using an aerated hydroponic method and compared with chia (Salvia hispanica L.) seed exudate, a commonly used root exudate analogue. Sandy loam soil was passed through a 500‐μm mesh and treated with each exudate at a concentration of 4.6 mg exudate g−1 dry soil. Two sets of soil samples were prepared. One set of treated soil samples was maintained at 4°C to suppress microbial processes. To characterize the effect of decomposition, the second set of samples was incubated at 16°C for 2 weeks at −30 kPa matric potential. Gas chromatography–mass spectrometry (GC–MS) analysis of the exudates showed that barley had the largest organic acid content and chia the largest content of sugars (polysaccharide‐derived or free), and maize was in between barley and chia. Yield stress of amended soil samples was measured by an oscillatory strain sweep test with a cone plate rheometer. When microbial decomposition was suppressed at 4°C, yield stress increased 20‐fold for chia seed exudate and twofold for maize root exudate compared with the control, whereas for barley root exudate decreased to half. The yield stress after 2 weeks of incubation compared with soil with suppressed microbial decomposition increased by 85% for barley root exudate, but for chia and maize it decreased by 87 and 54%, respectively. Barley root exudation might therefore disperse soil and this could facilitate nutrient release. The maize root and chia seed exudates gelled soil, which could create a more stable soil structure around roots or seeds. Highlights Rheological measurements quantified physical behaviour of plant exudates and effect on soil stabilization.Barley root exudates dispersed soil, which could release nutrients and carbon.Maize root and chia seed exudates had a stabilizing effect on soil.Physical engineering of soil in contact with plant roots depends on the nature and origin of exudates. PMID:29263712

Root chemistry and soil fauna, but not soil abiotic conditions explain the effects of plant diversity on root decomposition.

PubMed

Chen, Hongmei; Oram, Natalie J; Barry, Kathryn E; Mommer, Liesje; van Ruijven, Jasper; de Kroon, Hans; Ebeling, Anne; Eisenhauer, Nico; Fischer, Christine; Gleixner, Gerd; Gessler, Arthur; González Macé, Odette; Hacker, Nina; Hildebrandt, Anke; Lange, Markus; Scherer-Lorenzen, Michael; Scheu, Stefan; Oelmann, Yvonne; Wagg, Cameron; Wilcke, Wolfgang; Wirth, Christian; Weigelt, Alexandra

2017-11-01

Plant diversity influences many ecosystem functions including root decomposition. However, due to the presence of multiple pathways via which plant diversity may affect root decomposition, our mechanistic understanding of their relationships is limited. In a grassland biodiversity experiment, we simultaneously assessed the effects of three pathways-root litter quality, soil biota, and soil abiotic conditions-on the relationships between plant diversity (in terms of species richness and the presence/absence of grasses and legumes) and root decomposition using structural equation modeling. Our final structural equation model explained 70% of the variation in root mass loss. However, different measures of plant diversity included in our model operated via different pathways to alter root mass loss. Plant species richness had a negative effect on root mass loss. This was partially due to increased Oribatida abundance, but was weakened by enhanced root potassium (K) concentration in more diverse mixtures. Equally, grass presence negatively affected root mass loss. This effect of grasses was mostly mediated via increased root lignin concentration and supported via increased Oribatida abundance and decreased root K concentration. In contrast, legume presence showed a net positive effect on root mass loss via decreased root lignin concentration and increased root magnesium concentration, both of which led to enhanced root mass loss. Overall, the different measures of plant diversity had contrasting effects on root decomposition. Furthermore, we found that root chemistry and soil biota but not root morphology or soil abiotic conditions mediated these effects of plant diversity on root decomposition.

Rooting-depth of Atriplex canescens (fourwing saltbush) in mine spoils at the Navajo Mine, northwestern New Mexico

DOE Office of Scientific and Technical Information (OSTI.GOV)

Stutz, H.C.; Buchanan, B.A.

1990-12-31

The distribution of roots was determined for fourteen mature plants of Atriplex canescens (fourwing saltbush) growing on mine spoils at the Navajo Mine in northwestern New Mexico and for two plants growing in contiguous unmined native soil. In all instances the amount of roots, by length, was negatively correlated with depth and positively correlated with percent water-content of the soils. The majority of roots (59%) were in the upper 100 cm; 72% were in the upper 150 cm; and 84% were in the upper 200 cm. These percentages were higher for plants growing on backslopes (64%, 77% and 88%, respectively)more » and much higher for those growing in native soils (84%, 93% and 96%, respectively). Most of the roots (83%) were less than 0.1 mm in diameter, and 93% were less than 0.5 mm in diameter. Plants growing in topsoiled sites had more roots per unit volume of soil (1.3 cm per cc of soil) than those growing in non-topsoiled sites (1.1 cm per cc of soil). Those growing in backslopes had more roots (1.3 cm per cc of soil) than growing in swales (1.0 cm per cc of soil) and those growing in soils that contained no fly-ash had more (0.78 cm per cc) than those growing in soils that contain fly ash (0.12 cm per cc of soil). Plants growing in native soils had a greater proportion of their roots near the surface than plants growing in mined soils. Plants growing in swales had a greater proportion of their roots below two meters than plants growing on backslopes.« less

Technical note: Application of geophysical tools for tree root studies in forest ecosystems in complex soils

NASA Astrophysics Data System (ADS)

Rodríguez-Robles, Ulises; Arredondo, Tulio; Huber-Sannwald, Elisabeth; Alfredo Ramos-Leal, José; Yépez, Enrico A.

2017-11-01

While semiarid forests frequently colonize rocky substrates, knowledge is scarce on how roots garner resources in these extreme habitats. The Sierra San Miguelito Volcanic Complex in central Mexico exhibits shallow soils and impermeable rhyolitic-rock outcrops, which impede water movement and root placement beyond the soil matrix. However, rock fractures, exfoliated rocks and soil pockets potentially permit downward water percolation and root growth. With ground-penetrating radar (GPR) and electrical resistivity tomography (ERT), two geophysical methods advocated by Jayawickreme et al. (2014) to advance root ecology, we advanced in the method development studying root and water distribution in shallow rocky soils and rock fractures in a semiarid forest. We calibrated geophysical images with in situ root measurements, and then extrapolated root distribution over larger areas. Using GPR shielded antennas, we identified both fine and coarse pine and oak roots from 0.6 to 7.5 cm diameter at different depths into either soil or rock fractures. We also detected, trees anchoring their trunks using coarse roots underneath rock outcroppings. With ERT, we tracked monthly changes in humidity at the soil-bedrock interface, which clearly explained spatial root distribution of both tree species. Geophysical methods have enormous potential in elucidating root ecology. More interdisciplinary research could advance our understanding in belowground ecological niche functions and their role in forest ecohydrology and productivity.

Developmental morphology of cover crop species exhibit contrasting behaviour to changes in soil bulk density, revealed by X-ray computed tomography

PubMed Central

Burr-Hersey, Jasmine E.; Mooney, Sacha J.; Bengough, A. Glyn; Mairhofer, Stefan

2017-01-01

Plant roots growing through soil typically encounter considerable structural heterogeneity, and local variations in soil dry bulk density. The way the in situ architecture of root systems of different species respond to such heterogeneity is poorly understood due to challenges in visualising roots growing in soil. The objective of this study was to visualise and quantify the impact of abrupt changes in soil bulk density on the roots of three cover crop species with contrasting inherent root morphologies, viz. tillage radish (Raphanus sativus), vetch (Vicia sativa) and black oat (Avena strigosa). The species were grown in soil columns containing a two-layer compaction treatment featuring a 1.2 g cm-3 (uncompacted) zone overlaying a 1.4 g cm-3 (compacted) zone. Three-dimensional visualisations of the root architecture were generated via X-ray computed tomography, and an automated root-segmentation imaging algorithm. Three classes of behaviour were manifest as a result of roots encountering the compacted interface, directly related to the species. For radish, there was switch from a single tap-root to multiple perpendicular roots which penetrated the compacted zone, whilst for vetch primary roots were diverted more horizontally with limited lateral growth at less acute angles. Black oat roots penetrated the compacted zone with no apparent deviation. Smaller root volume, surface area and lateral growth were consistently observed in the compacted zone in comparison to the uncompacted zone across all species. The rapid transition in soil bulk density had a large effect on root morphology that differed greatly between species, with major implications for how these cover crops will modify and interact with soil structure. PMID:28753645

Developmental morphology of cover crop species exhibit contrasting behaviour to changes in soil bulk density, revealed by X-ray computed tomography.

PubMed

Burr-Hersey, Jasmine E; Mooney, Sacha J; Bengough, A Glyn; Mairhofer, Stefan; Ritz, Karl

2017-01-01

Plant roots growing through soil typically encounter considerable structural heterogeneity, and local variations in soil dry bulk density. The way the in situ architecture of root systems of different species respond to such heterogeneity is poorly understood due to challenges in visualising roots growing in soil. The objective of this study was to visualise and quantify the impact of abrupt changes in soil bulk density on the roots of three cover crop species with contrasting inherent root morphologies, viz. tillage radish (Raphanus sativus), vetch (Vicia sativa) and black oat (Avena strigosa). The species were grown in soil columns containing a two-layer compaction treatment featuring a 1.2 g cm-3 (uncompacted) zone overlaying a 1.4 g cm-3 (compacted) zone. Three-dimensional visualisations of the root architecture were generated via X-ray computed tomography, and an automated root-segmentation imaging algorithm. Three classes of behaviour were manifest as a result of roots encountering the compacted interface, directly related to the species. For radish, there was switch from a single tap-root to multiple perpendicular roots which penetrated the compacted zone, whilst for vetch primary roots were diverted more horizontally with limited lateral growth at less acute angles. Black oat roots penetrated the compacted zone with no apparent deviation. Smaller root volume, surface area and lateral growth were consistently observed in the compacted zone in comparison to the uncompacted zone across all species. The rapid transition in soil bulk density had a large effect on root morphology that differed greatly between species, with major implications for how these cover crops will modify and interact with soil structure.

Phenotyping for the dynamics of field wheat root system architecture

NASA Astrophysics Data System (ADS)

Chen, Xinxin; Ding, Qishuo; Błaszkiewicz, Zbigniew; Sun, Jiuai; Sun, Qian; He, Ruiyin; Li, Yinian

2017-01-01

We investigated a method to quantify field-state wheat RSA in a phenotyping way, depicting the 3D topology of wheat RSA in 14d periods. The phenotyping procedure, proposed for understanding the spatio-temporal variations of root-soil interaction and the RSA dynamics in the field, is realized with a set of indices of mm scale precision, illustrating the gradients of both wheat root angle and elongation rate along soil depth, as well as the foraging potential along the side directions. The 70d was identified as the shifting point distinguishing the linear root length elongation from power-law development. Root vertical angle in the 40 mm surface soil layer was the largest, but steadily decreased along the soil depth. After 98d, larger root vertical angle appeared in the deep soil layers. PAC revealed a stable root foraging potential in the 0-70d period, which increased rapidly afterwards (70-112d). Root foraging potential, explained by MaxW/MaxD ratio, revealed an enhanced gravitropism in 14d period. No-till post-paddy wheat RLD decreased exponentially in both depth and circular directions, with 90% roots concentrated within the top 20 cm soil layer. RER along soil depth was either positive or negative, depending on specific soil layers and the sampling time.

Is the inherent potential of maize roots efficient for soil phosphorus acquisition?

PubMed

Deng, Yan; Chen, Keru; Teng, Wan; Zhan, Ai; Tong, Yiping; Feng, Gu; Cui, Zhenling; Zhang, Fusuo; Chen, Xinping

2014-01-01

Sustainable agriculture requires improved phosphorus (P) management to reduce the overreliance on P fertilization. Despite intensive research of root adaptive mechanisms for improving P acquisition, the inherent potential of roots for efficient P acquisition remains unfulfilled, especially in intensive agriculture, while current P management generally focuses on agronomic and environmental concerns. Here, we investigated how levels of soil P affect the inherent potential of maize (Zea mays L.) roots to obtain P from soil. Responses of root morphology, arbuscular mycorrhizal colonization, and phosphate transporters were characterized and related to agronomic traits in pot and field experiments with soil P supply from deficiency to excess. Critical soil Olsen-P level for maize growth approximated 3.2 mg kg(-1), and the threshold indicating a significant environmental risk was about 15 mg kg(-1), which represented the lower and upper levels of soil P recommended in current P management. However, most root adaptations involved with P acquisition were triggered when soil Olsen-P was below 10 mg kg(-1), indicating a threshold for maximum root inherent potential. Therefore, to maintain efficient inherent potential of roots for P acquisition, we suggest that the target upper level of soil P in intensive agriculture should be reduced from the environmental risk threshold to the point maximizing the inherent potential of roots.

Phenotyping for the dynamics of field wheat root system architecture

PubMed Central

Chen, Xinxin; Ding, Qishuo; Błaszkiewicz, Zbigniew; Sun, Jiuai; Sun, Qian; He, Ruiyin; Li, Yinian

2017-01-01

We investigated a method to quantify field-state wheat RSA in a phenotyping way, depicting the 3D topology of wheat RSA in 14d periods. The phenotyping procedure, proposed for understanding the spatio-temporal variations of root-soil interaction and the RSA dynamics in the field, is realized with a set of indices of mm scale precision, illustrating the gradients of both wheat root angle and elongation rate along soil depth, as well as the foraging potential along the side directions. The 70d was identified as the shifting point distinguishing the linear root length elongation from power-law development. Root vertical angle in the 40 mm surface soil layer was the largest, but steadily decreased along the soil depth. After 98d, larger root vertical angle appeared in the deep soil layers. PAC revealed a stable root foraging potential in the 0–70d period, which increased rapidly afterwards (70–112d). Root foraging potential, explained by MaxW/MaxD ratio, revealed an enhanced gravitropism in 14d period. No-till post-paddy wheat RLD decreased exponentially in both depth and circular directions, with 90% roots concentrated within the top 20 cm soil layer. RER along soil depth was either positive or negative, depending on specific soil layers and the sampling time. PMID:28079107

Is the Inherent Potential of Maize Roots Efficient for Soil Phosphorus Acquisition?

PubMed Central

Deng, Yan; Chen, Keru; Teng, Wan; Zhan, Ai; Tong, Yiping; Feng, Gu; Cui, Zhenling; Zhang, Fusuo; Chen, Xinping

2014-01-01

Sustainable agriculture requires improved phosphorus (P) management to reduce the overreliance on P fertilization. Despite intensive research of root adaptive mechanisms for improving P acquisition, the inherent potential of roots for efficient P acquisition remains unfulfilled, especially in intensive agriculture, while current P management generally focuses on agronomic and environmental concerns. Here, we investigated how levels of soil P affect the inherent potential of maize (Zea mays L.) roots to obtain P from soil. Responses of root morphology, arbuscular mycorrhizal colonization, and phosphate transporters were characterized and related to agronomic traits in pot and field experiments with soil P supply from deficiency to excess. Critical soil Olsen-P level for maize growth approximated 3.2 mg kg−1, and the threshold indicating a significant environmental risk was about 15 mg kg−1, which represented the lower and upper levels of soil P recommended in current P management. However, most root adaptations involved with P acquisition were triggered when soil Olsen-P was below 10 mg kg−1, indicating a threshold for maximum root inherent potential. Therefore, to maintain efficient inherent potential of roots for P acquisition, we suggest that the target upper level of soil P in intensive agriculture should be reduced from the environmental risk threshold to the point maximizing the inherent potential of roots. PMID:24594677

Spatial heterogeneity of plant-soil feedback affects root interactions and interspecific competition.

PubMed

Hendriks, Marloes; Ravenek, Janneke M; Smit-Tiekstra, Annemiek E; van der Paauw, Jan Willem; de Caluwe, Hannie; van der Putten, Wim H; de Kroon, Hans; Mommer, Liesje

2015-08-01

Plant-soil feedback is receiving increasing interest as a factor influencing plant competition and species coexistence in grasslands. However, we do not know how spatial distribution of plant-soil feedback affects plant below-ground interactions. We investigated the way in which spatial heterogeneity of soil biota affects competitive interactions in grassland plant species. We performed a pairwise competition experiment combined with heterogeneous distribution of soil biota using four grassland plant species and their soil biota. Patches were applied as quadrants of 'own' and 'foreign' soils from all plant species in all pairwise combinations. To evaluate interspecific root responses, species-specific root biomass was quantified using real-time PCR. All plant species suffered negative soil feedback, but strength was species-specific, reflected by a decrease in root growth in own compared with foreign soil. Reduction in root growth in own patches by the superior plant competitor provided opportunities for inferior competitors to increase root biomass in these patches. These patterns did not cascade into above-ground effects during our experiment. We show that root distributions can be determined by spatial heterogeneity of soil biota, affecting plant below-ground competitive interactions. Thus, spatial heterogeneity of soil biota may contribute to plant species coexistence in species-rich grasslands. © 2015 The Authors. New Phytologist © 2015 New Phytologist Trust.

Plant adaptations to severely phosphorus-impoverished soils.

PubMed

Lambers, Hans; Martinoia, Enrico; Renton, Michael

2015-06-01

Mycorrhizas play a pivotal role in phosphorus (P) acquisition of plant roots, by enhancing the soil volume that can be explored. Non-mycorrhizal plant species typically occur either in relatively fertile soil or on soil with a very low P availability, where there is insufficient P in the soil solution for mycorrhizal hyphae to be effective. Soils with a very low P availability are either old and severely weathered or relatively young with high concentrations of oxides and hydroxides of aluminium and iron that sorb P. In such soils, cluster roots and other specialised roots that release P-mobilising carboxylates are more effective than mycorrhizas. Cluster roots are ephemeral structures that release carboxylates in an exudative burst. The carboxylates mobilise sparingly-available sources of soil P. The relative investment of biomass in cluster roots and the amount of carboxylates that are released during the exudative burst differ between species on severely weathered soils with a low total P concentration and species on young soils with high total P concentrations but low P availability. Taking a modelling approach, we explore how the optimal cluster-root strategy depends on soil characteristics, thus offering insights for plant breeders interested in developing crop plants with optimal cluster-root strategies. Copyright © 2015 Elsevier Ltd. All rights reserved.

Root system morphology of Oregon white oak on a glacial outwash soil.

Treesearch

Warren D. Devine; Constance A. Harrington

2005-01-01

Oregon white oak is reportedly a deeply rooted species, but its rooting habit on coarse-textured soils is undocumented. In the Puget Trough of western Washington, Oregon white oak grows in coarse-textured glacial outwash soils on lowland sites. Our objective was to quantify the gross root system morphology of Oregon white oak in these soils, thereby improving our...

High-resolution synchrotron imaging shows that root hairs influence rhizosphere soil structure formation.

PubMed

Koebernick, Nicolai; Daly, Keith R; Keyes, Samuel D; George, Timothy S; Brown, Lawrie K; Raffan, Annette; Cooper, Laura J; Naveed, Muhammad; Bengough, Anthony G; Sinclair, Ian; Hallett, Paul D; Roose, Tiina

2017-10-01

In this paper, we provide direct evidence of the importance of root hairs on pore structure development at the root-soil interface during the early stage of crop establishment. This was achieved by use of high-resolution (c. 5 μm) synchrotron radiation computed tomography (SRCT) to visualise both the structure of root hairs and the soil pore structure in plant-soil microcosms. Two contrasting genotypes of barley (Hordeum vulgare), with and without root hairs, were grown for 8 d in microcosms packed with sandy loam soil at 1.2 g cm -3 dry bulk density. Root hairs were visualised within air-filled pore spaces, but not in the fine-textured soil regions. We found that the genotype with root hairs significantly altered the porosity and connectivity of the detectable pore space (> 5 μm) in the rhizosphere, as compared with the no-hair mutants. Both genotypes showed decreasing pore space between 0.8 and 0.1 mm from the root surface. Interestingly the root-hair-bearing genotype had a significantly greater soil pore volume-fraction at the root-soil interface. Effects of pore structure on diffusion and permeability were estimated to be functionally insignificant under saturated conditions when simulated using image-based modelling. © 2017 The Authors. New Phytologist © 2017 New Phytologist Trust.

New theories of root growth modelling

NASA Astrophysics Data System (ADS)

Landl, Magdalena; Schnepf, Andrea; Vanderborght, Jan; Huber, Katrin; Javaux, Mathieu; Bengough, A. Glyn; Vereecken, Harry

2016-04-01

In dynamic root architecture models, root growth is represented by moving root tips whose line trajectory results in the creation of new root segments. Typically, the direction of root growth is calculated as the vector sum of various direction-affecting components. However, in our simulations this did not reproduce experimental observations of root growth in structured soil. We therefore developed a new approach to predict the root growth direction. In this approach we distinguish between, firstly, driving forces for root growth, i.e. the force exerted by the root which points in the direction of the previous root segment and gravitropism, and, secondly, the soil mechanical resistance to root growth or penetration resistance. The latter can be anisotropic, i.e. depending on the direction of growth, which leads to a difference between the direction of the driving force and the direction of the root tip movement. Anisotropy of penetration resistance can be caused either by microscale differences in soil structure or by macroscale features, including macropores. Anisotropy at the microscale is neglected in our model. To allow for this, we include a normally distributed random deflection angle α to the force which points in the direction of the previous root segment with zero mean and a standard deviation σ. The standard deviation σ is scaled, so that the deflection from the original root tip location does not depend on the spatial resolution of the root system model. Similarly to the water flow equation, the direction of the root tip movement corresponds to the water flux vector while the driving forces are related to the water potential gradient. The analogue of the hydraulic conductivity tensor is the root penetrability tensor. It is determined by the inverse of soil penetration resistance and describes the ease with which a root can penetrate the soil. By adapting the three dimensional soil and root water uptake model R-SWMS (Javaux et al., 2008) in this way, we were able to simulate root growth and root water uptake in soil with macropores. The model was parametrized using experimental results of studies by Hirth et al. (2005) and Stirzaker et al. (1996). It proved to be capable of reproducing observed root growth responses to structured soil both at the single root and the plant root system scale. This new approach enables us to investigate how plant roots use macropores to gain access to water and nutrient reservoirs in deeper, highly dense soil layers. Acknowledgements: Funding by German Research Foundation within the Research Unit 888 is gratefully acknowledged. The James Hutton Institute receives funding from the Scottish Government.

Ground penetrating radar for underground sensing in agriculture: a review

NASA Astrophysics Data System (ADS)

Liu, Xiuwei; Dong, Xuejun; Leskovar, Daniel I.

2016-10-01

Belowground properties strongly affect agricultural productivity. Traditional methods for quantifying belowground properties are destructive, labor-intensive and pointbased. Ground penetrating radar can provide non-invasive, areal, and repeatable underground measurements. This article reviews the application of ground penetrating radar for soil and root measurements and discusses potential approaches to overcome challenges facing ground penetrating radar-based sensing in agriculture, especially for soil physical characteristics and crop root measurements. Though advanced data-analysis has been developed for ground penetrating radar-based sensing of soil moisture and soil clay content in civil engineering and geosciences, it has not been used widely in agricultural research. Also, past studies using ground penetrating radar in root research have been focused mainly on coarse root measurement. Currently, it is difficult to measure individual crop roots directly using ground penetrating radar, but it is possible to sense root cohorts within a soil volume grid as a functional constituent modifying bulk soil dielectric permittivity. Alternatively, ground penetrating radarbased sensing of soil water content, soil nutrition and texture can be utilized to inversely estimate root development by coupling soil water flow modeling with the seasonality of plant root growth patterns. Further benefits of ground penetrating radar applications in agriculture rely on the knowledge, discovery, and integration among differing disciplines adapted to research in agricultural management.

Microbial decomposition of dead grassland roots and its influence on the carbon cycle under changing precipitation patterns

NASA Astrophysics Data System (ADS)

Becerra, C.; Schimel, J.

2013-12-01

Soil is the largest reservoir of organic carbon in terrestrial ecosystems and as such, represents a potential sink for carbon dioxide.The decomposition products of dead roots buried in the soil is a contributor to soil organic carbon. However, changing precipitation patterns may affect its fate by influencing the microbial community responsible for decomposing dead roots. To assess the impact of changing precipitation patterns, we constructed microcosms with grassland soil collected from the UCSB Sedgwick Reserve, an active and long-term research site, and dead roots from greenhouse-grown grass, Bromus diandrus. Microcosms were wetted continuously, every seven days, or every twenty days. Sets of microcosms were periodically deconstructed to assess the soil versus the roots-associated microbial community and its function. Differences in respiration rates of microcosms continuously wetted or wetted every 7 days versus microcosms wetted every 20 days existed for the first 70 days. After which, no differences in respiration rates were seen with microcosms containing roots and the no roots control. Relatedly, after a 70% roots mass loss by day 50, there was no difference in the respiration rate of microcosms containing roots and the no roots control. More than half of the roots mass loss had occurred by 30 days. By the end of the incubation period, the roots mass loss in continuously wet and 7-day wetted microcosms were over 80% compared to 67% for the microcosms wetted every 20 days. Microbial biomass in the soil were constant over time and showed no difference in treatment except with the no roots control during the first half of the incubation period. Hydrolytic enzyme activities (β-1,4-glucosidase; α-1,4-glucosidase; β-1,4-xylosidase; β-1,4-cellobiosidase) on the roots versus the soil attached to the roots were over an order greater and decreased faster with the exception of N-acetyl-glucosaminidase and acid phosphatase. Oxidative enzyme activities (phenol oxidase and peroxidase) on the roots versus the soil were also an order of magnitude greater, however the activities were constant over time regardless of the treatment, whereas the activities in the soil increased then decreased after 50 days. Our results suggest that the frequency of precipitation affects early root decomposition and long-term soil carbon storage of dead roots relatively unaffected by changing precipitation patterns.

New Insights into How Increases in Fertility Improve the Growth of Rice at the Seedling Stage in Red Soil Regions of Subtropical China

PubMed Central

Li, Yilin; Shi, Weiming; Wang, Xingxiang

2014-01-01

The differences in rhizosphere nitrification activities between high- and low- fertility soils appear to be related to differences in dissolved oxygen concentrations in the soil, implying a relationship to differences in the radial oxygen loss (ROL) of rice roots in these soils. A miniaturised Clark-type oxygen microelectrode system was used to determine rice root ROL and the rhizosphere oxygen profile, and rhizosphere nitrification activity was studied using a short-term nitrification activity assay. Rice planting significantly altered the oxygen cycling in the water-soil system due to rice root ROL. Although the oxygen content in control high-fertility soil (without rice plants) was lower than that in control low-fertility soil, high rice root ROL significantly improved the rhizosphere oxygen concentration in the high-fertility soil. High soil fertility improved the rice root growth and root porosity as well as rice root ROL, resulting in enhanced rhizosphere nitrification. High fertility also increased the content of nitrification-induced nitrate in the rhizosphere, resulting in enhanced ammonium uptake and assimilation in the rice. Although high ammonium pools in the high-fertility soil increased rhizosphere nitrification, rice root ROL might also contribute to rhizosphere nitrification improvement. This study provides new insights into the reasons that an increase in soil fertility may enhance the growth of rice. Our results suggest that an amendment of the fertiliser used in nutrient- and nitrification-poor paddy soils in the red soil regions of China may significantly promote rice growth and rice N nutrition. PMID:25291182

Exploring the transfer of recent plant photosynthates to soil microbes: mycorrhizal pathway vs direct root exudation

PubMed Central

Kaiser, Christina; Kilburn, Matt R; Clode, Peta L; Fuchslueger, Lucia; Koranda, Marianne; Cliff, John B; Solaiman, Zakaria M; Murphy, Daniel V

2015-01-01

Plants rapidly release photoassimilated carbon (C) to the soil via direct root exudation and associated mycorrhizal fungi, with both pathways promoting plant nutrient availability. This study aimed to explore these pathways from the root's vascular bundle to soil microbial communities. Using nanoscale secondary ion mass spectrometry (NanoSIMS) imaging and 13C-phospho- and neutral lipid fatty acids, we traced in-situ flows of recently photoassimilated C of 13CO2-exposed wheat (Triticum aestivum) through arbuscular mycorrhiza (AM) into root- and hyphae-associated soil microbial communities. Intraradical hyphae of AM fungi were significantly 13C-enriched compared to other root-cortex areas after 8 h of labelling. Immature fine root areas close to the root tip, where AM features were absent, showed signs of passive C loss and co-location of photoassimilates with nitrogen taken up from the soil solution. A significant and exclusively fresh proportion of 13C-photosynthates was delivered through the AM pathway and was utilised by different microbial groups compared to C directly released by roots. Our results indicate that a major release of recent photosynthates into soil leave plant roots via AM intraradical hyphae already upstream of passive root exudations. AM fungi may act as a rapid hub for translocating fresh plant C to soil microbes. PMID:25382456

Models for root water uptake under deficit irrigation

NASA Astrophysics Data System (ADS)

Lazarovitch, Naftali; Krounbi, Leilah; Simunek, Jirka

2010-05-01

Modern agriculture, with its dependence on irrigation, fertilizers, and pesticide application, contributes significantly to the water and solute influx through the soil into the groundwater, specifically in arid areas. The quality and quantity of this water as it passes through the vadose zone is influenced primarily by plant roots. Root water uptake is a function of both a physical root parameter, commonly referred to as the root length density, and the soil water status. The location of maximum water uptake in a homogenous soil profile of uniform water content and hydraulic conductivity occurs in the soil layer containing the largest root length density. Under field conditions, in a drying soil, plants are both subject to, and the source of, great spatial variability in the soil water content. The upper soil layers containing the bulk of the root zone are usually the most water depleted, while the deeper regions of the soil profile containing fewer roots are wetter. Changes in the physiological functioning of plants have been shown to result from extended periods of water stress, but the short term effects of water stress on root water uptake are less well understood. While plants can minimize transpiration and the resulting growth rates under limiting conditions to conserve water, many plants maintain a constant potential transpiration rate long after the commencement of the drying process. Compensatory uptake, whereby plants respond to non-uniform, limiting conditions by increasing water uptake from areas in the root zone characterized by more favorable conditions, is one such mechanism by which plants sustain potential transpiration rates in drying soils. The development of models which accurately characterize temporal and spatial root water uptake patterns is important for agricultural resource optimization, upon which subsequent management decisions affecting resource conservation and environmental pollution are based. Numerical simulations of root water uptake in various irrigation and fertilization regimes provide a much-needed alternative to tiring and expensive field work. These simulations can aid in raising agricultural water use efficiency while preserving soil and water resources. In this research, controlled lab experiments were carried out in soil-packed lysimeters designed for plant cultivation. Both the water balance of the growing plants as well as the temporary matric head distribution in the soil profile were calculated and measured. The experiment was conducted with sweet sorghum grown in two different soil profiles with different hydraulic properties. The experiment provided the data necessary to calculate the parameters of various models used to simulate root water uptake, by using an inverse solution method imbedded in the HYDRUS-1D code. The observed increase in uptake from the wetter soil regions under drying conditions, as measured and calculated, sheds light on the dominant role of soil hydraulic properties over the root distribution, and consequently root water uptake.

Soil weathering agents are limited where deep tree roots are removed, even after decades of forest regeneration

NASA Astrophysics Data System (ADS)

Billings, S. A.; Richter, D. D., Jr.; Hirmas, D.; Lehmeier, C.; Bagchi, S.; Brecheisen, Z.; Sullivan, P. L.; Min, K.; Hauser, E.; Stair, R.; Flournoy, R.

2017-12-01

Deep roots pump reduced C deep into Earth's critical zone (CZ) as they grow and function. This action generates acid-forming CO2 and organic acids (OA) and fosters microbes that also produce these weathering agents. This phenomenon results in a regolith-weathering reaction front that propagates down with vertical root extension and water infiltration. Across old-growth hardwood, younger pine, and annual crop plots at the Calhoun Critical Zone Observatory, we tested the hypothesis that persistent absence of deep roots, a widespread anthropogenic phenomenon, reduces root- and microbially-mediated biogeochemical pools and fluxes important for weathering, even well below maximum root density. We also hypothesized that land use effects on deep soil biogeochemistry is evident even after decades of forest regeneration. Root abundance to 2 m declined with depth, and was greater in old-growth and regenerating forests than in crop plots at most depths. Old-growth soils also contain more roots than younger pine soils: between 30-45 and 70-80 cm depth, old-growth root abundances were greater than in regenerating forests, and old-growth soils exhibited root distributions with less severe declines with depth and harbored more root-associated bacteria than younger forests. Changing root abundances influenced concentrations of weathering agents. At 3 m, in situ soil [CO2] reached 6%, 4%, and 2% in old-growth, regenerating, and crop soils, respectively. Soil organic C (SOC) and extractable OC (EOC, an OA proxy) did not differ across land use, but at 4-5 m EOC/SOC was higher in old-growth compared to regenerating forests and crop soils (20.0±2.6 vs. 2.0±1.0%). We suggest that biogeochemistry deep beneath old-growth forests reflects greater root prevalence and propensity for generation of weathering agents, and that disturbance regimes inducing deep root mortality impose top-down signals relevant to weathering processes deep in Earth's CZ even after decades of forest regeneration.

Overexpression of a tea flavanone 3-hydroxylase gene confers tolerance to salt stress and Alternaria solani in transgenic tobacco.

PubMed

Mahajan, Monika; Yadav, Sudesh Kumar

2014-08-01

Flavan-3-ols are the major flavonoids present in tea (Camellia sinensis) leaves. These are known to have antioxidant and free radical scavenging properties in vitro. Flavanone 3-hydroxylase is considered to be an important enzyme of flavonoid pathway leading to accumulation of flavan-3-ols in tea. Expression analysis revealed the upregulation in transcript levels of C. sinensis flavanone 3-hydroxylase (CsF3H) encoding gene under salt stress. In this study, the biotechnological potential of CsF3H was evaluated by gene overexpression in tobacco (Nicotiana tabacum cv. Xanthi). Overexpression of CsF3H cDNA increased the content of flavan-3-ols in tobacco and conferred tolerance to salt stress and fungus Alternaria solani infection. Transgenic tobaccos were observed for increase in primary root length, number of lateral roots, chlorophyll content, antioxidant enzyme expression and their activities. Also, they showed lesser malondialdehyde content and electrolyte leakage compared to control tobacco plants. Further, transgenic plants produced higher degree of pectin methyl esterification via decreasing pectin methyl esterase (PME) activity in roots and leaves under unstressed and salt stressed conditions. The effect of flavan-3-ols on pectin methyl esterification under salt stressed conditions was further validated through in vitro experiments in which non-transgenic (wild) tobacco seedlings were exposed to salt stress in presence of flavan-3-ols, epicatechin and epigallocatechin. The in vitro exposed seedlings showed similar trend of increase in pectin methyl esterification through decreasing PME activity as observed in CsF3H transgenic lines. Taken together, overexpression of CsF3H provided tolerance to salt stress and fungus A. solani infection to transgenic tobacco through improved antioxidant system and enhanced pectin methyl esterification.

Intelligent evaluation of color sensory quality of black tea by visible-near infrared spectroscopy technology: A comparison of spectra and color data information

NASA Astrophysics Data System (ADS)

Ouyang, Qin; Liu, Yan; Chen, Quansheng; Zhang, Zhengzhu; Zhao, Jiewen; Guo, Zhiming; Gu, Hang

2017-06-01

Instrumental test of black tea samples instead of human panel test is attracting massive attention recently. This study focused on an investigation of the feasibility for estimation of the color sensory quality of black tea samples using the VIS-NIR spectroscopy technique, comparing the performances of models based on the spectra and color information. In model calibration, the variables were first selected by genetic algorithm (GA); then the nonlinear back propagation-artificial neural network (BPANN) models were established based on the optimal variables. In comparison with the other models, GA-BPANN models from spectra data information showed the best performance, with the correlation coefficient of 0.8935, and the root mean square error of 0.392 in the prediction set. In addition, models based on the spectra information provided better performance than that based on the color parameters. Therefore, the VIS-NIR spectroscopy technique is a promising tool for rapid and accurate evaluation of the sensory quality of black tea samples.

Intelligent evaluation of color sensory quality of black tea by visible-near infrared spectroscopy technology: A comparison of spectra and color data information.

PubMed

Ouyang, Qin; Liu, Yan; Chen, Quansheng; Zhang, Zhengzhu; Zhao, Jiewen; Guo, Zhiming; Gu, Hang

2017-06-05

Instrumental test of black tea samples instead of human panel test is attracting massive attention recently. This study focused on an investigation of the feasibility for estimation of the color sensory quality of black tea samples using the VIS-NIR spectroscopy technique, comparing the performances of models based on the spectra and color information. In model calibration, the variables were first selected by genetic algorithm (GA); then the nonlinear back propagation-artificial neural network (BPANN) models were established based on the optimal variables. In comparison with the other models, GA-BPANN models from spectra data information showed the best performance, with the correlation coefficient of 0.8935, and the root mean square error of 0.392 in the prediction set. In addition, models based on the spectra information provided better performance than that based on the color parameters. Therefore, the VIS-NIR spectroscopy technique is a promising tool for rapid and accurate evaluation of the sensory quality of black tea samples. Copyright © 2017 Elsevier B.V. All rights reserved.

Study of oil palm root architecture with variation of crop stage and soil type vulnerable to drought

NASA Astrophysics Data System (ADS)

Safitri, Lisma; Suryanti, Sri; Kautsar, Valensi; Kurniawan, Agung; Santiabudi, Fajar

2018-03-01

Root arhitecture is affected by watertable level, characteristic of soil, organic matter and also the crop stages. Root architecture spread horizontally and vertically which each consist of primary, secondary, tertiary and quaternary downward root. The oil palm root observation with variation of crop stage and soil type showed that the root of oil palm plant year 2008 on spodosols soil spread along 650 cm horizontally from the trunk and penetrate downward in range of 9-28 cm vertically. Planted in the same type of soil, the root of oil palm plant year 2004 spread along 650 cm horizontally and reached to downward in a larger range from 3 to 57 cm vertically. As a comparison, the root architecture of oil palm on inceptisols soil established the range much greater vertically than the previous. The root of oil palm plant year 2008 spread along 640 cm horizontally and penetrate downward in range of 52-90 cm vertically. With the variation of crop age, the root of oil palm plant year 2003 spread along 650 cm horizontally and reached to downward in a larger range from 150 to 200 cm vertically. Based on this study, root architecture of oil palm was varied and need to be detailed. The precise root architecture of oil palm allows a better understanding on hydrological properties of oil palm root particularly which is cultivated on soil type vulnerable to drought. Referring to this root architecture, it was enable to develop the study on early drought detection of oil palm to optimise production and towards oil palm sustainability.

Functional characterization of proanthocyanidin pathway enzymes from tea and their application for metabolic engineering.

PubMed

Pang, Yongzhen; Abeysinghe, I Sarath B; He, Ji; He, Xianzhi; Huhman, David; Mewan, K Mudith; Sumner, Lloyd W; Yun, Jianfei; Dixon, Richard A

2013-03-01

Tea (Camellia sinensis) is rich in specialized metabolites, especially polyphenolic proanthocyanidins (PAs) and their precursors. To better understand the PA pathway in tea, we generated a complementary DNA library from leaf tissue of the blister blight-resistant tea cultivar TRI2043 and functionally characterized key enzymes responsible for the biosynthesis of PA precursors. Structural genes encoding enzymes involved in the general phenylpropanoid/flavonoid pathway and the PA-specific branch pathway were well represented in the library. Recombinant tea leucoanthocyanidin reductase (CsLAR) expressed in Escherichia coli was active with leucocyanidin as substrate to produce the 2R,3S-trans-flavan-ol (+)-catechin in vitro. Two genes encoding anthocyanidin reductase, CsANR1 and CsANR2, were also expressed in E. coli, and the recombinant proteins exhibited similar kinetic properties. Both converted cyanidin to a mixture of (+)-epicatechin and (-)-catechin, although in different proportions, indicating that both enzymes possess epimerase activity. These epimers were unexpected based on the belief that tea PAs are made from (-)-epicatechin and (+)-catechin. Ectopic expression of CsANR2 or CsLAR led to the accumulation of low levels of PA precursors and their conjugates in Medicago truncatula hairy roots and anthocyanin-overproducing tobacco (Nicotiana tabacum), but levels of oligomeric PAs were very low. Surprisingly, the expression of CsLAR in tobacco overproducing anthocyanin led to the accumulation of higher levels of epicatechin and its glucoside than of catechin, again highlighting the potential importance of epimerization in flavan-3-ol biosynthesis. These data provide a resource for understanding tea PA biosynthesis and tools for the bioengineering of flavanols.

The influence of arbuscular mycorrhizae on root precision nutrient foraging of two pioneer plant species during early reclamation

NASA Astrophysics Data System (ADS)

Boldt-Burisch, Katja; Naeth, M. Anne

2017-04-01

On many post mining sites in the Lusatian Mining District (East Germany) soil heterogeneity consists of sandy soil with embedded clay-silt fragments. Those clays silt fragments might act as nutrient hotspots. Arbuscular mycorrhizal fungi in an infertile ecosystem could enhance a plant's ability to selectively forage for those nutrients and thus to improve plants nutrient supply. In our study we investigated whether silt-clay fragments within a sandy soil matrix induced preferential root growth of Lotus corniculatus and Calamagrostis epigeios, whether arbuscular mycorrhizae influenced root foraging patterns, and to what extent selective rooting in clay silt fragments influenced plant growth were addressed in this research. Soil types were sterile and non-sterile sandy soil and clay-silt fragments. Treatments were with and without arbuscular mycorrhizae, with and without soil solution, and soil solution and mycorrhizal inoculum combined. Root biomass, root density and intraradical fungal alkaline phosphatase activity and frequency were determined in fragments relative to sandy soil. Furthermore, temporal relationship of number of roots in fragments and plant height was assessed. Lotus corniculatus showed strong selective rooting into fragments especially with those plants treated with commercial cultivated arbuscular mycorrhizae; Calamagrostis epigeios did not. Without arbuscular mycorrhizae, L. corniculatus growth was significantly reduced and selective rooting did not occur. Selective rooting induced significant growth spurts of L. corniculatus. Roots in fragments had higher fungal alkaline phosphatase activity suggesting that mycorrhizal efficiency and related plants phosphorus supply is enhanced in roots in fragments. The application of cultivated arbuscular mycorrhizal fungi significantly and quickly influenced root foraging patterns, especially those of L. corniculatus, suggesting mycorrhizae may also enhance the ability of other plants to selectively forage for nutrients and could therefore play an important role in early plant establishment on infertile reclamation sites.

Waterlogging-induced changes in root architecture of germplasm accessions of the tropical forage grass Brachiaria humidicola.

PubMed

Cardoso, Juan Andrés; Jiménez, Juan de la Cruz; Rao, Idupulapati M

2014-04-08

Waterlogging is one of the major factors limiting the productivity of pastures in the humid tropics. Brachiaria humidicola is a forage grass commonly used in zones prone to temporary waterlogging. Brachiaria humidicola accessions adapt to waterlogging by increasing aerenchyma in nodal roots above constitutive levels to improve oxygenation of root tissues. In some accessions, waterlogging reduces the number of lateral roots developed from main root axes. Waterlogging-induced reduction of lateral roots could be of adaptive value as lateral roots consume oxygen supplied from above ground via their parent root. However, a reduction in lateral root development could also be detrimental by decreasing the surface area for nutrient and water absorption. To examine the impact of waterlogging on lateral root development, an outdoor study was conducted to test differences in vertical root distribution (in terms of dry mass and length) and the proportion of lateral roots to the total root system (sum of nodal and lateral roots) down the soil profile under drained or waterlogged soil conditions. Plant material consisted of 12 B. humidicola accessions from the gene bank of the International Center for Tropical Agriculture, Colombia. Rooting depth was restricted by 21 days of waterlogging and confined to the first 30 cm below the soil surface. Although waterlogging reduced the overall proportion of lateral roots, its proportion significantly increased in the top 10 cm of the soil. This suggests that soil flooding increases lateral root proliferation of B. humidicola in the upper soil layers. This may compensate for the reduction of root surface area brought about by the restriction of root growth at depths below 30 cm. Further work is needed to test the relative efficiency of nodal and lateral roots for nutrient and water uptake under waterlogged soil conditions. Published by Oxford University Press on behalf of the Annals of Botany Company.

SOIL RESPIRED D13C SIGNATURES REFLECT ROOT EXUDATE OR ROOT TURNOVER SIGNATURES IN AN ELEVATED CO2 AND OZONE MESOCOSM EXPERIMENT

EPA Science Inventory

Bulk tissue and root and soil respired d13C signatures were measured throughout the soil profile in a Ponderosa Pine mesocosm experiment exposed to ambient and elevated CO2 concentrations. For the ambient treatment, root (0-1mm, 1-2mm, and >2mm) and soil d13C signatures were ?24...

Root phenotypic differences across a historical gradient of wheat genotypes alter soil rhizosphere communities and their impact on nitrogen cycling

NASA Astrophysics Data System (ADS)

Kallenbach, C.; Junaidi, D.; Fonte, S.; Byrne, P. F.; Wallenstein, M. D.

2017-12-01

Plants and soil microorganisms can exhibit coevolutionary relationships where, for example, in exchange for root carbon, rhizosphere microbes enhance plant fitness through improved plant nutrient availability. Organic agriculture relies heavily on these interactions to enhance crop nitrogen (N) availability. However, modern agriculture and breeding under high mineral N fertilization may have disrupted these interactions through alterations to belowground carbon inputs and associated impacts on the soil microbiome. As sustainability initiatives lead to a restoration of agricultural soil organic matter, modern crop cultivars may still be constrained by crop roots' ability to effectively support microbial-mediated N mineralization. We investigated how differences in root traits across a historical gradient of spring wheat genotypes influence the rhizosphere microbial community and effects on soil N and wheat yield. Five genotypes, representing wild (Wild), pre-Green Revolution (Old), and modern (Modern) wheat, were grown under greenhouse conditions in soils with and without compost to also compare genotype response to difference in native soil microbiomes and organic resource availability. We analyzed rhizosphere soils for microbial community composition, enzyme activities, inorganic N, and microbial biomass. Root length density, surface area, fine root volume and root:shoot ratio were higher in the Wild and Old genotype (Gypsum) compared to the two Modern genotypes (P<0.01). The Wild and Old genotype had a more positive response to compost for root length and diameter, N-cycling enzyme activities, microbial biomass, and soil inorganic N, compared to Modern genotypes. However, under unamended soils, the microbial community and soil N were not affected by genotypes. We also relate how root traits and N cycling across genotypes correspond to microbial community composition. Our preliminary data suggest that the older wheat genotypes and their root traits are more effective at enhancing microbial N mineralization under organically managed soils. Thus, to optimize crop N availability from organic sources, breeding efforts should consider incorporating root traits of older genotypes to better support the beneficial interactions between crop roots and their rhizosphere microbiome.

Artificial Root Exudate System (ARES): a field approach to simulate tree root exudation in soils

NASA Astrophysics Data System (ADS)

Lopez-Sangil, Luis; Estradera-Gumbau, Eduard; George, Charles; Sayer, Emma

2016-04-01

The exudation of labile solutes by fine roots represents an important strategy for plants to promote soil nutrient availability in terrestrial ecosystems. Compounds exuded by roots (mainly sugars, carboxylic and amino acids) provide energy to soil microbes, thus priming the mineralization of soil organic matter (SOM) and the consequent release of inorganic nutrients into the rhizosphere. Studies in several forest ecosystems suggest that tree root exudates represent 1 to 10% of the total photoassimilated C, with exudation rates increasing markedly under elevated CO2 scenarios. Despite their importance in ecosystem functioning, we know little about how tree root exudation affect soil carbon dynamics in situ. This is mainly because there has been no viable method to experimentally control inputs of root exudates at field scale. Here, I present a method to apply artificial root exudates below the soil surface in small field plots. The artificial root exudate system (ARES) consists of a water container with a mixture of labile carbon solutes (mimicking tree root exudate rates and composition), which feeds a system of drip-tips covering an area of 1 m2. The tips are evenly distributed every 20 cm and inserted 4-cm into the soil with minimal disturbance. The system is regulated by a mechanical timer, such that artificial root exudate solution can be applied at frequent, regular daily intervals. We tested ARES from April to September 2015 (growing season) within a leaf-litter manipulation experiment ongoing in temperate deciduous woodland in the UK. Soil respiration was measured monthly, and soil samples were taken at the end of the growing season for PLFA, enzymatic activity and nutrient analyses. First results show a very rapid mineralization of the root exudate compounds and, interestingly, long-term increases in SOM respiration, with negligible effects on soil moisture levels. Large positive priming effects (2.5-fold increase in soil respiration during the growing season) were observed in absence of aboveground forest litter, with lower or no priming when the litter was present. Preliminary results show that soil microbial community is also significantly affected by ARES.

[Control of Soil Nutrient Loss of Typical Reforestation Patterns Along the Three Gorges Reservoir Area].

PubMed

Wu, Dong; Huang, Zhi-lin; Xiao, Wen-fa; Zeng, Li-xiong

2015-10-01

Annual soil nutrient loss characteristics on typical reforestation patterns in watershed along the Three Gorges Reservoir Area were studied based on runoff plot experiment. Runoff and sediment nutrition content from May to October 2014 of typical reforestation patterns including garden plot (tea garden), forest land (Chinese chestnut) and the original slope farmland were determined and then analyzed. The results showed that: (1) After the Returning Farmland to Forest Project the quantity of annual soil nutrient (nitrogen and phosphorus, the sum of them in sediment and runoff) loss decreased. The output of total nitrogen (TN) was in the order of slope farmland (2 444.27 g x hm(-2)) > tea garden (998.70 g x hm(-2)) > Chinese chestnut forest (532.61 g x hm(-2)), and for total phosphorus (TP) loss was slope farmland (1 690.48 g x hm(-2)) > tea garden (488.06 g x hm(-2)) > Chinese chestnut forest (129.00 g x hm(-2)) . Compared with slope farmland, the load of TN and TP output of reforestation patterns decreased 68.68% and 81.75%, respectively. (2) Compared with slope farmland, available nitrogen loss decreased in reforestation patterns. Total nitrate nitrogen (NO3(-)-N) loss ranked in the order of slope farmland (113.79 g x hm(-2)) > tea garden (73.75 g x hm(-2)) > Chinese chestnut forest (56.06 g x hm(-2)) The largest amount of ammonium nitrogen (NH4(+)-N) was found in tea garden (69.34 g x hm(-2)), then in farmland (52.45 g x hm(-2)), and the least in Chinese chestnut forest (47.23 g x hm(-2)). (3) The main route of NO3(-)-N and NH4(+)-N loss was both through runoff, the quantity of NO3(-)-N and NH4(+)-N output in which accounted for 91.4% and 92.2% of the total, respectively. The quantity of TN and TP in sediment accounted for 86.6% and 98.4% of the total. TN and TP loss showed an extremely significant correlation with sediments, which showed that sediment output was the main approach of TN and TP loss.

An improved technique for taking hydraulic conductivity cores from forest soils

Treesearch

Gerald M. Aubertin

1969-01-01

Describes a large-diameter, heavy-duty soil sampler that makes it possible to obtain long, relatively undisturbed sample columns from stony, root-filled forest soils. The resultant samples include the roots, root channels, stones, and macro-voids common to forested soils.

Non-invasive analysis of root-soil interaction using three complementary imaging approaches

NASA Astrophysics Data System (ADS)

Haber-Pohlmeier, Sabina; Tötzke, Christian; Pohlmeier, Andreas; Rudolph-Mohr, Nicole; Kardjilov, Nikolay; Lehmann, Eberhard; Oswald, Sascha E.

2016-04-01

Plant roots are known to modify physical, chemical and biological properties of the rhizosphere, thereby, altering conditions for water and nutrient uptake. We aim for capturing the dynamic processes occurring at the soil-root interface in situ. A combination of neutron (NI), magnetic resonance (MRI) and micro-focus X-ray tomography (CT) is applied to monitor the rhizosphere of young plants grown in sandy soil in cylindrical containers (diameter 3 cm). A novel transportable low field MRI system is operated directly at the neutron facility allowing for combined measurements of the very same sample capturing the same hydro-physiological state. The combination of NI, MRI and CT provides three-dimensional access to the root system in respect to structure and hydraulics of the rhizosphere and the transport of dissolved marker substances. The high spatial resolution of neutron imaging and its sensitivity for water can be exploited for the 3D analysis of the root morphology and detailed mapping of three-dimensional water content at the root soil interface and the surrounding soil. MRI has the potential to yield complementary information about the mobility of water, which can be bound in small pores or in the polymeric network of root exudates (mucilage layer). We inject combined tracers (GdDPTA or D2O) to study water fluxes through soil, rhizosphere and roots. Additional CT measurements reveal mechanical impacts of roots on the local microstructure of soil, e.g. showing soil compaction or the formation of cracks. We co-register the NT, MRI and CT data to integrate the complementary information into an aligned 3D data set. This allows, e.g., for co-localization of compacted soil regions or cracks with the specific local soil hydraulics, which is needed to distinguish the contribution of root exudation from mechanical impacts when interpreting altered hydraulic properties of the rhizosphere. Differences between rhizosphere and bulk soil can be detected and interpreted in terms of root growth, root exudation, and root water uptake. Thus, we demonstrate that such a multi-imaging approach can be used as powerful tool contributing to a more comprehensive picture of the rhizosphere.

Petroleum Contamination and Plant Identity Influence Soil and Root Microbial Communities While AMF Spores Retrieved from the Same Plants Possess Markedly Different Communities

PubMed Central

Iffis, Bachir; St-Arnaud, Marc; Hijri, Mohamed

2017-01-01

Phytoremediation is a promising in situ green technology based on the use of plants to cleanup soils from organic and inorganic pollutants. Microbes, particularly bacteria and fungi, that closely interact with plant roots play key roles in phytoremediation processes. In polluted soils, the root-associated microbes contribute to alleviation of plant stress, improve nutrient uptake and may either degrade or sequester a large range of soil pollutants. Therefore, improving the efficiency of phytoremediation requires a thorough knowledge of the microbial diversity living in the rhizosphere and in close association with plant roots in both the surface and the endosphere. This study aims to assess fungal ITS and bacterial 16S rRNA gene diversity using high-throughput sequencing in rhizospheric soils and roots of three plant species (Solidago canadensis, Populus balsamifera, and Lycopus europaeus) growing spontaneously in three petroleum hydrocarbon polluted sedimentation basins. Microbial community structures of rhizospheric soils and roots were compared with those of microbes associated with arbuscular mycorrhizal fungal (AMF) spores to determine the links between the root and rhizosphere communities and those associated with AMF. Our results showed a difference in OTU richness and community structure composition between soils and roots for both bacteria and fungi. We found that petroleum hydrocarbon pollutant (PHP) concentrations have a significant effect on fungal and bacterial community structures in both soils and roots, whereas plant species identity showed a significant effect only on the roots for bacteria and fungi. Our results also showed that the community composition of bacteria and fungi in soil and roots varied from those associated with AMF spores harvested from the same plants. This let us to speculate that in petroleum hydrocarbon contaminated soils, AMF may release chemical compounds by which they recruit beneficial microbes to tolerate or degrade the PHPs present in the soil. PMID:28848583

Petroleum Contamination and Plant Identity Influence Soil and Root Microbial Communities While AMF Spores Retrieved from the Same Plants Possess Markedly Different Communities.

PubMed

Iffis, Bachir; St-Arnaud, Marc; Hijri, Mohamed

2017-01-01

Phytoremediation is a promising in situ green technology based on the use of plants to cleanup soils from organic and inorganic pollutants. Microbes, particularly bacteria and fungi, that closely interact with plant roots play key roles in phytoremediation processes. In polluted soils, the root-associated microbes contribute to alleviation of plant stress, improve nutrient uptake and may either degrade or sequester a large range of soil pollutants. Therefore, improving the efficiency of phytoremediation requires a thorough knowledge of the microbial diversity living in the rhizosphere and in close association with plant roots in both the surface and the endosphere. This study aims to assess fungal ITS and bacterial 16S rRNA gene diversity using high-throughput sequencing in rhizospheric soils and roots of three plant species ( Solidago canadensis, Populus balsamifera , and Lycopus europaeus ) growing spontaneously in three petroleum hydrocarbon polluted sedimentation basins. Microbial community structures of rhizospheric soils and roots were compared with those of microbes associated with arbuscular mycorrhizal fungal (AMF) spores to determine the links between the root and rhizosphere communities and those associated with AMF. Our results showed a difference in OTU richness and community structure composition between soils and roots for both bacteria and fungi. We found that petroleum hydrocarbon pollutant (PHP) concentrations have a significant effect on fungal and bacterial community structures in both soils and roots, whereas plant species identity showed a significant effect only on the roots for bacteria and fungi. Our results also showed that the community composition of bacteria and fungi in soil and roots varied from those associated with AMF spores harvested from the same plants. This let us to speculate that in petroleum hydrocarbon contaminated soils, AMF may release chemical compounds by which they recruit beneficial microbes to tolerate or degrade the PHPs present in the soil.

A heterogeneous boron distribution in soil influences the poplar root system architecture development

NASA Astrophysics Data System (ADS)

Rees, R.; Robinson, B. H.; Hartmann, S.; Lehmann, E.; Schulin, R.

2009-04-01

Poplars are well suited for the phytomanagement of boron (B)-contaminated sites, due to their high transpiration rate and tolerance to elevated soil B concentrations. However, the uptake and the fate of B in poplar stands are not well understood. This information is crucial to improve the design of phytomanagement systems, where the primary role of poplars is to reduce B leaching by reducing the water flux through the contaminated material. Like other trace elements, B occurs heterogeneously in soils. Concentrations can differ up to an order of magnitude within centimetres. These gradients affect plant root growth and thus via preferential flow along the roots water and mass transport in soils to ground and surface waters. Generally there are three possible reactions of plant roots to patches with elevated trace element concentrations in soils: indifference, avoidance, or foraging. While avoidance or indifference might seem to be the most obvious strategies, foraging cannot be excluded a priori, because of the high demand of poplars for B compared to other tree species. We aimed to determine the rooting strategies of poplars in soils where B is either homo- or heterogeneously distributed. We planted 5 cm cuttings of Populus tremula var. Birmensdorf clones in aluminum (Al) containers with internal dimensions of 64 x 67 x 1.2 cm. The soil used was subsoil from northern Switzerland with a naturally low B and organic C concentration. We setup two treatments and a control with three replicates each. We spiked a bigger and a smaller portion of the soil with the same amount of B(OH)3-salt, in order to obtain soil concentrations of 7.5 mg B kg-1 and 20 mg B kg-1. We filled the containers with (a) un-spiked soil, (b) the 7.5 mg B kg-1 soil and (c) heterogeneously. The heterogeneous treatment consisted of one third 20 mg B kg-1 soil and two thirds control soil. We grew the poplars in a small greenhouse over 2 months and from then on in a climate chamber for another 3 months. We irrigated the poplars with modified Hoagland's solution that contained no B. We imaged the roots in the soil every 3rd week using neutron radiography (NR) at the Paul-Scherrer Institute. Living roots can be visualised in soil by NR because of their higher water content compared to the surrounding soil. At the end of the growing period, the Al containers were opened and the soil surface was scanned by a standard office scanner. The soil in the containers was divided into nine equal portions representing different depths and spiked or un-spiked regions in soil profile. We separated roots and soil as well as the aerial parts (stems and leaves). We obtained data on root morphological parameters like root length and root density by evaluating scans of the washed root samples with an image evaluation software. All soil and plant samples were dried, weighed and analyzed for B and mineral nutrients using ICP-OES. Plant vitality parameters like water use, growth and number of living leaves did not show any reaction to the treatments. The oldest poplar leaves from poplars in the B-spiked treatments showed signs of light to serious necrosis. From the neutron radiographs it was apparent that poplar roots reached the walls of the Al- containers during the experiment. Primary roots grew at first strongly in lengths in horizontal as well as in vertical direction and only after this lateral root growth was visible. Although the filling and packing of the containers was done with great care to establish an ideally homogeneous soil profile settlement occurred in some containers resulting in gaps in the profile. However, roots growth did not seem to be deranged since roots simply crossed these gaps and continued growth in the adjacent soil patch. The complete results will be available at the time of the conference.

Critical soil bulk density for soybean growth in Oxisols

NASA Astrophysics Data System (ADS)

Keisuke Sato, Michel; Veras de Lima, Herdjania; Oliveira, Pedro Daniel de; Rodrigues, Sueli

2015-10-01

The aim of this study was to evaluate the critical soil bulk density from the soil penetration resistance measurements for soybean root growth in Brazilian Amazon Oxisols. The experiment was carried out in a greenhouse using disturbed soil samples collected from the northwest of Para characterized by different texture. The treatments consisted of a range of soil bulk densities for each soil textural class. Three pots were used for soybean growth of and two for the soil penetration resistance curve. From the fitted model, the critical soil bulk density was determined considering the penetration resistance values of 2 and 3 MPa. After sixty days, plants were cut and root length, dry mass of root, and dry mass of shoots were determined. At higher bulk densities, the increase in soil water content decreased the penetration resistance, allowing unrestricted growth of soybean roots. Regardless of soil texture, the penetration resistance of 2 and 3 MPa had a slight effect on root growth in soil moisture at field capacity and a reduction of 50% in the soybean root growth was achieved at critical soil bulk density of 1.82, 1.75, 1.51, and 1.45 Mg m-3 for the sandy loam, sandy clay loam, clayey, and very clayey soil.

Mitigating Nitrous Oxide Emissions from Tea Field Soil Using Bioaugmentation with a Trichoderma viride Biofertilizer

PubMed Central

Xu, Shengjun; Fu, Xiaoqing; Ma, Shuanglong; Xiao, Runlin; Li, Yong; Zhuang, Guoqiang

2014-01-01

Land-use conversion from woodlands to tea fields in subtropical areas of central China leads to increased nitrous oxide (N2O) emissions, partly due to increased nitrogen fertilizer use. A field investigation of N2O using a static closed chamber-gas chromatography revealed that the average N2O fluxes in tea fields with 225 kg N ha−1 yr−1 fertilizer application were 9.4 ± 6.2 times higher than those of woodlands. Accordingly, it is urgent to develop practices for mitigating N2O emissions from tea fields. By liquid-state fermentation of sweet potato starch wastewater and solid-state fermentation of paddy straw with application of Trichoderma viride, we provided the tea plantation with biofertilizer containing 2.4 t C ha−1 and 58.7 kg N ha−1. Compared to use of synthetic N fertilizer, use of biofertilizer at 225 kg N ha−1 yr−1 significantly reduced N2O emissions by 33.3%–71.8% and increased the tea yield by 16.2%–62.2%. Therefore, the process of bioconversion/bioaugmentation tested in this study was found to be a cost-effective and feasible approach to reducing N2O emissions and can be considered the best management practice for tea fields. PMID:24955418

Effects of experimental throughfall reduction and soil warming on fine root biomass and its decomposition in a warm temperate oak forest.

PubMed

Liu, Yanchun; Liu, Shirong; Wan, Shiqiang; Wang, Jingxin; Wang, Hui; Liu, Kuan

2017-01-01

Fine root dynamics play a critical role in regulating carbon (C) cycling in terrestrial ecosystems. Examining responses of fine root biomass and its decomposition to altered precipitation pattern and climate warming is crucial to understand terrestrial C dynamics and its feedback to climate change. Fine root biomass and its decomposition rate were investigated in a warm temperate oak forest through a field manipulation experiment with throughfall reduction and soil warming conducted. Throughfall reduction significantly interacted with soil warming in affecting fine root biomass and its decomposition. Throughfall reduction substantially increased fine root biomass and its decomposition in unheated plots, but negative effects occurred in warmed plots. Soil warming significantly enhanced fine root biomass and its decomposition under ambient precipitation, but the opposite effects exhibited under throughfall reduction. Different responses in fine root biomass among different treatments could be largely attributed to soil total nitrogen (N), while fine root decomposition rate was more depended on microbial biomass C and N. Our observations indicate that decreased precipitation may offset the positive effect of soil warming on fine root biomass and decomposition. Copyright © 2016 Elsevier B.V. All rights reserved.

Intraspecific variation in fine root respiration and morphology in response to in situ soil nitrogen fertility in a 100-year-old Chamaecyparis obtusa forest.

PubMed

Makita, Naoki; Hirano, Yasuhiro; Sugimoto, Takanobu; Tanikawa, Toko; Ishii, Hiroaki

2015-12-01

Soil N fertility has an effect on belowground C allocation, but the physiological and morphological responses of individual fine root segments to variations in N availability under field conditions are still unclear. In this study, the direction and magnitude of the physiological and morphological function of fine roots in response to variable in situ soil N fertility in a forest site were determined. We measured the specific root respiration (Rr) rate, N concentration and morphology of fine root segments with 1-3 branching orders in a 100-year-old coniferous forest of Chamaecyparis obtusa. Higher soil N fertility induced higher Rr rates, root N concentration, and specific root length (SRL), and lower root tissue density (RTD). In all fertility levels, the Rr rates were significantly correlated positively with root N and SRL and negatively with RTD. The regression slopes of respiration with root N and RTD were significantly higher along the soil N fertility gradient. Although no differences in the slopes of Rr and SRL relationship were found across the levels, there were significant shifts in the intercept along the common slope. These results suggest that a contrasting pattern in intraspecific relationships between specific Rr and N, RTD, and SRL exists among soils with different N fertility. Consequently, substantial increases in soil N fertility would exert positive effects on organ-scale root performance by covarying the Rr, root N, and morphology for their potential nutrient and water uptake.

[Effects of litterfall and root input on soil physical and chemical properties in Pinus massoniana plantations in Three Gorges Reservoir Area, China].

PubMed

Ge, Xiao-Gai; Huang, Zhi-Lin; Cheng, Rui-Mei; Zeng, Li-Xiong; Xiao, Wen-Fa; Tan, Ben-Wang

2012-12-01

An investigation was made on the soil physical and chemical properties in different-aged Pinus massoniana plantations in Three Gorges Reservoir Area under effects of litterfall and roots. The annual litter production in mature stand was 19.4% and 65.7% higher than that in nearly mature and middle-aged stands, respectively. The litter standing amount was in the sequence of mature stand > middle-aged stand > nearly mature stand, while the litter turnover coefficient was in the order of nearly mature stand (0.51) > mature stand (0.40) > middle-aged stand (0.36). The total root biomass, live root biomass, and dead root biomass were the highest in middle-aged stand, and the lowest in nearly mature stand. In middle-aged stand, soil total porosity was the highest, and soil bulk density was the lowest. Soil organic matter and total nitrogen contents were in the order of mature stand > middle-aged stand > nearly mature stand, soil nitrate nitrogen occupied a larger proportion of soil mineral N in nearly mature stand, while ammonium nitrogen accounted more in middle-aged and mature stands. In nearly mature stand, litter production was moderate but turnover coefficient was the highest, and soil nutrient contents were the lowest. In middle-aged stand, root biomass and soil total porosity were the highest, and soil bulk density were the lowest. In mature stand, root biomass was lower while soil nutrient contents were the highest. The increase of root biomass could improve soil physical properties.

Paleosols can promote root growth of the recent vegetation - a case study from the sandy soil-sediment sequence Rakt, the Netherlands

NASA Astrophysics Data System (ADS)

Gocke, M. I.; Kessler, F.; van Mourik, J. M.; Jansen, B.; Wiesenberg, G. L. B.

2015-12-01

Soil studies commonly comprise the uppermost meter for tracing e.g. soil development. However, the maximum rooting depth of various plants significantly exceeds this depth. We hypothesized that deeper parts of the soil, soil parent material and especially paleosols provide beneficial conditions in terms of e.g. nutrient contents, thus supporting their utilization and exploitation by deep roots. We aimed to decipher the different phases of soil formation in Dutch drift- and coversands. The study site is located at Bedafse Bergen (SE Netherlands) in a 200 year old oak stand. A recent Podzol developed on driftsand covering a Plaggic Anthrosol that established in a relict Podzol on Late Glacial eolian coversand. Root-free soil and sediment samples, collected in 10-15 cm depth increments, were subjected to a multi-proxy physical and geochemical approach. The Plaggic Anthrosol revealed low bulk density and high phosphorous and organic carbon contents, whereas the relict Podzol was characterized by high iron and aluminum contents. Frequencies of fine (≤ 2 mm) and medium roots (2-5 mm) were determined on horizontal levels and the profile wall for a detailed pseudo-three-dimensional insight. On horizontal levels, living roots maximized in the uppermost part of the relict Podzol with ca. 4450 and 220 m-2, significantly exceeding topsoil root abundances. Roots of oak trees thus benefited from the favorable growth conditions in the nutrient-rich Plaggic Anthrosol, whereas increased compactness and high aluminum contents of the relict Podzol caused a strong decrease of roots. The approach demonstrated the benefit of comprehensive root investigation to support and explain pedogenic investigations of soil profiles, as fine roots can be significantly underestimated when quantified at the profile wall. The possible rooting of soil parent material and paleosols long after their burial confirmed recent studies on the potential influence of rooting to overprint sediment-(paleo)soil sequences of various ages, sedimentary and climatic settings. Potential consequences of deep rooting for terrestrial deep carbon stocks, located to a relevant part in paleosols, remain largely unknown and require further investigation.

Paleosols can promote root growth of recent vegetation - a case study from the sandy soil-sediment sequence Rakt, the Netherlands

NASA Astrophysics Data System (ADS)

Gocke, Martina I.; Kessler, Fabian; van Mourik, Jan M.; Jansen, Boris; Wiesenberg, Guido L. B.

2016-10-01

Soil studies commonly comprise the uppermost meter for tracing, e.g., soil development. However, the maximum rooting depth of various plants significantly exceeds this depth. We hypothesized that deeper parts of the soil, soil parent material and especially paleosols provide beneficial conditions in terms of, e.g., nutrient contents, thus supporting their utilization and exploitation by deep roots. We aimed to decipher the different phases of soil formation in Dutch drift sands and cover sands. The study site is located at Bedafse Bergen (southeastern Netherlands) in a 200-year-old oak stand. A recent Podzol developed on drift sand covering a Plaggic Anthrosol that was piled up on a relict Podzol on Late Glacial eolian cover sand. Root-free soil and sediment samples, collected in 10-15 cm depth increments, were subjected to a multi-proxy physical and geochemical approach. The Plaggic Anthrosol revealed low bulk density and high phosphorous and organic carbon contents, whereas the relict Podzol was characterized by high iron and aluminum contents. Frequencies of fine (diameter ≤ 2 mm) and medium roots (2-5 mm) were determined on horizontal levels and the profile wall for a detailed pseudo-three-dimensional insight. On horizontal levels, living roots were most abundant in the uppermost part of the relict Podzol with ca. 4450 and 220 m-2, significantly exceeding topsoil root abundances. Roots of oak trees thus benefited from the favorable growth conditions in the nutrient-rich Plaggic Anthrosol, whereas increased compactness and high aluminum contents of the relict Podzol caused a strong decrease of roots. The approach demonstrated the benefit of comprehensive root investigation to support interpretation of soil profiles, as fine roots can be significantly underestimated when quantified at the profile wall. The possible rooting of soil parent material and paleosols long after their burial confirmed recent studies on the potential influence of rooting to overprint sediment-(paleo)soil sequences of various ages, sedimentary and climatic settings. Potential consequences of deep rooting for terrestrial deep carbon stocks, located to a relevant part in paleosols, remain largely unknown and require further investigation.

Non-Invasive Methods to Characterize Soil-Plant Interactions at Different Scales

NASA Astrophysics Data System (ADS)

Javaux, M.; Kemna, A.; Muench, M.; Oberdoerster, C.; Pohlmeier, A.; Vanderborght, J.; Vereecken, H.

2006-05-01

Root water uptake is a dynamic and non-linear process, which interacts with the soil natural variability and boundary conditions to generate heterogeneous spatial distributions of soil water. Soil-root fluxes are spatially variable due to heterogeneous gradients and hydraulic connections between soil and roots. While 1-D effective representation of the root water uptake has been successfully applied to predict transpiration and average water content profiles, finer spatial characterization of the water distribution may be needed when dealing with solute transport. Indeed, root water uptake affects the water velocity field, which has an effect on solute velocity and dispersion. Although this variability originates from small-scale processes, these may still play an important role at larger scales. Therefore, in addition to investigate the variability of the soil hydraulic properties, experimental and numerical tools for characterizing root water uptake (and its effects on soil water distribution) from the pore to the field scales are needed to predict in a proper way the solute transport. Obviously, non-invasive and modeling techniques which are helpful to achieve this objective will evolve with the scale of interest. At the pore scale, soil structure and root-soil interface phenomena have to be investigated to understand the interactions between soil and roots. Magnetic resonance imaging may help to monitor water gradients and water content changes around roots while spectral induced polarization techniques may be used to characterize the structure of the pore space. At the column scale, complete root architecture of small plants and water content depletion around roots can be imaged by magnetic resonance. At that scale, models should explicitly take into account the three-dimensional gradient dependency of the root water uptake, to be able to predict solute transport. At larger scales however, simplified models, which implicitly take into account the heterogeneous root water uptake along roots, should be preferred given the complexity of the system. At such scales, electrical resistance tomography or ground-penetrating radar can be used to map the water content changes and derive effective parameters for predicting solute transport.

Soil Penetration Rates by Earthworms and Plant Roots- Mechanical and Energetic Considerations

NASA Astrophysics Data System (ADS)

Ruiz, Siul; Schymanski, Stan; Or, Dani

2016-04-01

We analyze the implications of different soil burrowing rates by earthworms and growing plant roots using mechanical models that consider soil rheological properties. We estimate the energetic requirements for soil elasto-viscoplastic displacement at different rates for similar burrows and water contents. In the core of the mechanical model is a transient cavity expansion into viscoplastic wet soil that mimic an earthworm or root tip cone-like penetration and subsequent cavity expansion due to pressurized earthworm hydrostatic skeleton or root radial growth. Soil matrix viscoplatic considerations enable separation of the respective energetic requirements for earthworms penetrating at 2 μm/s relative to plant roots growing at 0.2 μm/s . Typical mechanical and viscous parameters are obtained inversely for soils under different fixed water contents utilizing custom miniaturized cone penetrometers at different fixed penetration rates (1 to 1000 μm/s). Experimental results determine critical water contents where soil exhibits pronounced viscoplatic behavior (close to saturation), bellow which the soil strength limits earthworms activity and fracture propagation by expanding plant roots becomes the favorable mechanical mode. The soil mechanical parameters in conjunction with earthworm and plant root physiological pressure limitations (200 kPa and 2000 kPa respectively) enable delineation of the role of soil saturation in regulating biotic penetration rates for different soil types under different moisture contents. Furthermore, this study provides a quantitative framework for estimating rates of energy expenditure for soil penetration, which allowed us to determine maximum earthworm population densities considering soil mechanical properties and the energy stored in soil organic matter.

HYDRAULIC REDISTRIBUTION OF SOIL WATER BY ROOTS IN FORESTS OF THE PACIFIC NORTHWEST

EPA Science Inventory

One aspect of structural complexity of forest canopies is the root system structure belowground, which influences patterns of soil water utilization by trees. Deeply rooted trees and other plants can hydraulically lift water via their roots from several m below the soil surface ...

Vegetation Impact on Soil Strength: A State of the Knowledge Review

DTIC Science & Technology

2017-06-20

and 5 were amenity. Using soil columns containing four plants, with n indicating the number of replicate columns, they found a variety of root depths...fiber, TN, is given by (Gray and Barker 2004) = 2 � . (12) The shear-strength increase or reinforcement from n ...interface friction stress between root and soil; ER = root-fiber tensile modulus; D = root diameter; n = number of roots; L = root length; hr = the

Dynamics of air gap formation around roots with changing soil water content.

NASA Astrophysics Data System (ADS)

Vetterlein, D.; Carminati, A.; Weller, U.; Oswald, S.; Vogel, H.-J.

2009-04-01

Most models regarding uptake of water and nutrients from soil assume intimate contact between roots and soil. However, it is known for a long time that roots may shrink under drought conditions. Due to the opaque nature of soil this process could not be observed in situ until recently. Combining tomography of the entire sample (field of view of 16 x 16 cm, pixel side 0.32 mm) with local tomography of the soil region around roots (field of view of 5 x 5 cm, pixel side 0.09 mm), the high spatial resolution required to image root shrinkage and formation of air-filled gaps around roots could be achieved. Applying this technique and combining it with microtensiometer measurements, measurements of plant gas exchange and microscopic assessment of root anatomy, a more detailed study was conducted to elucidate at which soil matric potential roots start to shrink in a sandy soil and which are the consequences for plant water relations. For Lupinus albus grown in a sandy soil tomography of the entire root system and of the interface between taproot and soil was conducted from day 11 to day 31 covering two drying cycles. Soil matric potential decreased from -36 hPa at day 11 after planting to -72, -251, -429 hPa, on day 17, 19, 20 after planting. On day 20 an air gap started to occur around the tap root and extended further on day 21 with matric potential below -429 hPa (equivalent to 5 v/v % soil moisture). From day 11 to day 21 stomatal conductivity decreased from 467 to 84 mmol m-2 s-1, likewise transpiration rate decreased and plants showed strong wilting symptoms on day 21. Plants were watered by capillary rise on day 21 and recovered completely within a day with stomatal conductivity increasing to 647 mmol m-2 s-1. During a second drying cycle, which was shorter as plants continuously increased in size, air gap formed again at the same matric potential. Plant stomatal conductance and transpiration decreased in a similar fashion with decreasing matric potential and appearance of air gap as during the first cycle. Microscopic assessment of the tap root at day 31 showed that secondary thickening of the taproot occurred all along the region of interest observed during X-ray tomography. A large part of the cross sections consists of lignified tissue; no root hairs could be observed along the tap root. Gaps are expected to reduce water transfers between soil and roots. Opening and closing of gaps may help plants to prevent water loss when the soil dries, and to restore the soil-root continuity when water becomes available.

Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota.

PubMed

Bulgarelli, Davide; Rott, Matthias; Schlaeppi, Klaus; Ver Loren van Themaat, Emiel; Ahmadinejad, Nahal; Assenza, Federica; Rauf, Philipp; Huettel, Bruno; Reinhardt, Richard; Schmelzer, Elmon; Peplies, Joerg; Gloeckner, Frank Oliver; Amann, Rudolf; Eickhorst, Thilo; Schulze-Lefert, Paul

2012-08-02

The plant root defines the interface between a multicellular eukaryote and soil, one of the richest microbial ecosystems on Earth. Notably, soil bacteria are able to multiply inside roots as benign endophytes and modulate plant growth and development, with implications ranging from enhanced crop productivity to phytoremediation. Endophytic colonization represents an apparent paradox of plant innate immunity because plant cells can detect an array of microbe-associated molecular patterns (also known as MAMPs) to initiate immune responses to terminate microbial multiplication. Several studies attempted to describe the structure of bacterial root endophytes; however, different sampling protocols and low-resolution profiling methods make it difficult to infer general principles. Here we describe methodology to characterize and compare soil- and root-inhabiting bacterial communities, which reveals not only a function for metabolically active plant cells but also for inert cell-wall features in the selection of soil bacteria for host colonization. We show that the roots of Arabidopsis thaliana, grown in different natural soils under controlled environmental conditions, are preferentially colonized by Proteobacteria, Bacteroidetes and Actinobacteria, and each bacterial phylum is represented by a dominating class or family. Soil type defines the composition of root-inhabiting bacterial communities and host genotype determines their ribotype profiles to a limited extent. The identification of soil-type-specific members within the root-inhabiting assemblies supports our conclusion that these represent soil-derived root endophytes. Surprisingly, plant cell-wall features of other tested plant species seem to provide a sufficient cue for the assembly of approximately 40% of the Arabidopsis bacterial root-inhabiting microbiota, with a bias for Betaproteobacteria. Thus, this root sub-community may not be Arabidopsis-specific but saprophytic bacteria that would naturally be found on any plant root or plant debris in the tested soils. By contrast, colonization of Arabidopsis roots by members of the Actinobacteria depends on other cues from metabolically active host cells.

Towards Novel Techniques for Root Phenotyping Using GPR

NASA Astrophysics Data System (ADS)

Kobylinski, C.; Neely, H.; Everett, M. E.; Hays, D. B.; Lewis, K.

2017-12-01

The ability to phenotype roots in situ would provide information for carbon sequestration potential through increased root mass, possible water-seeking strategies by plants, and generate data for plant breeders. One technique for root phenotyping is to measure differences in soil moisture and use this data to infer root presence or absence. Current technologies for soil moisture detection include electromagnetic induction and neutron moisture meters; however, ground penetrating radar (GPR) has been suggested to monitor root phenotypes. The objective of this study is to use GPR as a novel technique for detecting roots and classifying root phenotypes based on the detection of differences in dielectric permittivity in response to changes in soil water content. The study will be conducted at two sites in Texas: Thrall, TX (Burleson clay) and Lubbock, TX (Olton clay loam). Three root types will be investigated: fibrous (grain sorghum), tap root (cowpea), and mixed (9-species). Data will be collected along a 10 m linear transect in each plot with a PulseEkko GPR bi-static unit operating at a radio frequency of 500 MHz. Additionally, an EM38-MK2 survey will be performed along each transect. Soil surface moisture readings will be collected with a ML3 ThetaProbe soil moisture sensor and a neutron moisture meter will be used to obtain soil moisture measurements down to 1.2 m. Measurements will be collected every two weeks throughout the growing season. Soil properties including particle size distribution, cation exchange capacity, and bulk density will also be measured. GPR's ability to distinguish root types across soils will be assessed.

Root traits predict decomposition across a landscape-scale grazing experiment

PubMed Central

Smith, Stuart W; Woodin, Sarah J; Pakeman, Robin J; Johnson, David; van der Wal, René

2014-01-01

Root litter is the dominant soil carbon and nutrient input in many ecosystems, yet few studies have considered how root decomposition is regulated at the landscape scale and how this is mediated by land-use management practices. Large herbivores can potentially influence below-ground decomposition through changes in soil microclimate (temperature and moisture) and changes in plant species composition (root traits). To investigate such herbivore-induced changes, we quantified annual root decomposition of upland grassland species in situ across a landscape-scale livestock grazing experiment, in a common-garden experiment and in laboratory microcosms evaluating the influence of key root traits on decomposition. Livestock grazing increased soil temperatures, but this did not affect root decomposition. Grazing had no effect on soil moisture, but wetter soils retarded root decomposition. Species-specific decomposition rates were similar across all grazing treatments, and species differences were maintained in the common-garden experiment, suggesting an overriding importance of litter type. Supporting this, in microcosms, roots with lower specific root area (m2 g−1) or those with higher phosphorus concentrations decomposed faster. Our results suggest that large herbivores alter below-ground carbon and nitrogen dynamics more through their effects on plant species composition and associated root traits than through effects on the soil microclimate. PMID:24841886

[Research on bacteria microecology in root rot rhizosphere soil of Coptis chinensis produced in Shizhu city].

PubMed

Song, Xu-Hong; Wang, Yu; Li, Long-Yun; Tan, Jun

2017-04-01

Illumina Hiseq 2500 high-throughput sequencing platform was used to study the bacteria richness and diversity, the soil enzyme activities, nutrients in unplanted soil, root-rot and healthy rhizophere soil of Coptis chinensis for deeply discussing the mechanism of the root-rot of C. chinensis. The high-throughput sequencing result showed that the artificial cultivation effected the bacteria community richness and diversity. The bacteria community richness in healthy and diseased rhizosphere soil showed significant lower than that of in unplanted soil (P<0.05) and declined bacteria diversity. The bacteria community richness in root-rot rhizosphere soil increased significantly than that of health and unplanted soil and the diversity was lower significant than that of unplanted soil (P<0.05). The results of soil nutrients and enzyme activities detected that the pH value, available phosphorus and urease activity decreased and the sucrase activity increased significantly (P<0.05). The content of organic carbon and alkaline hydrolysis nitrogen the catalase and urease activity in root rot soil samples was significantly lower than that of healthy soil samples (P<0.05). However, the contents of available phosphorus and available potassium were significantly in root-rot sample higher than that of healthy soil samples (P<0.05). Comprehensive analysis showed that the artificial cultivation declined the bacteria community richness and diversity. The bacteria community richness decreased significantly and the decreased diversity may be the cause of the root-rot. Meanwhile, the decrease of carbon and the catalase activity may be another cause of the root-rot in C. chinensis produced in Shizhu city, Chongqing province. Copyright© by the Chinese Pharmaceutical Association.

Nitrogen fluxes at the root-soil interface show a mismatch of nitrogen fertilizer supply and sugarcane root uptake capacity

PubMed Central

Brackin, Richard; Näsholm, Torgny; Robinson, Nicole; Guillou, Stéphane; Vinall, Kerry; Lakshmanan, Prakash; Schmidt, Susanne; Inselsbacher, Erich

2015-01-01

Globally only ≈50% of applied nitrogen (N) fertilizer is captured by crops, and the remainder can cause pollution via runoff and gaseous emissions. Synchronizing soil N supply and crop demand will address this problem, however current soil analysis methods provide little insight into delivery and acquisition of N forms by roots. We used microdialysis, a novel technique for in situ quantification of soil nutrient fluxes, to measure N fluxes in sugarcane cropping soils receiving different fertilizer regimes, and compare these with N uptake capacities of sugarcane roots. We show that in fertilized sugarcane soils, fluxes of inorganic N exceed the uptake capacities of sugarcane roots by several orders of magnitude. Contrary, fluxes of organic N closely matched roots’ uptake capacity. These results indicate root uptake capacity constrains plant acquisition of inorganic N. This mismatch between soil N supply and root N uptake capacity is a likely key driver for low N efficiency in the studied crop system. Our results also suggest that (i) the relative contribution of inorganic N for plant nutrition may be overestimated when relying on soil extracts as indicators for root-available N, and (ii) organic N may contribute more to crop N supply than is currently assumed. PMID:26496834

Green tea consumption, abdominal obesity as related factors of lacunar infarction in Korean women.

PubMed

Ko, S-G; Go, H; Sun, S; Lee, S; Park, W; Choi, Y; Song, Y; Hwang, G; Kim, G; Jeon, C; Park, J; Lee, K; Cha, M; Bang, O; Jung, H; Kim, N; Shin, Y-C

2011-08-01

Our purpose was to evaluate interaction of green tea consumption and abdominal obesity as related factors for lacunar infarction in Korean women. A hospital-based, incident case-control study. The Prevention and Managements of Stroke in Women study. Cases (n=233) of first incident lacunar infarction were enrolled and matched by age to stroke-free hospital controls (n=204). The data were collected through face-to-face interviews by well trained research assistants to assess demographic, medical, lifestyle, marital status, religions status, green tea consumptions, family history of stroke, smoking status, alcohol consumption, meat and vegetable intake frequency, and past history of hypertension. Biochemical analysis, fasting blood specimens for lipid, glucose, and cholesterol level were acquired. Compared with the non green tea consumer and obese women group, only the green tea consumption and non obese women group had a protective effect of lacunar infarction when adjusted for age, and age plus diet factors (OR, 0.23; 95% CI, 0.09, 0.59; OR, 0.21; 95% CI, 0.08, 0.56 respectively), but lost their significance after adjustment for age, diet factors, vascular risk factors and full model included atherogenic index factors (OR, 0.32; 95% CI, 0.09 to 1.01; OR, 0.49; 95% CI, 0.12, 1.89 respectively). The interaction of green tea consumption and non obesity have reduced risk of lacunar infarction, but not after adjustment for age, diet factors, vascular risk factors and atherogenic index. Also individually green tea consumption and abdominal obesity have failed to find an independent relationship with lacunar infarction after adjustment by all risk factors. Green tea consumption and green tea consumption with non obese group seemed to have a protective effect for lacunar infarction. In the results of our study, these results still remain controversial, and then we need further and larger study to get at the root of real causal effect of both relationships.

[Allelopathy autotoxicity effects of aquatic extracts from rhizospheric soil on rooting and growth of stem cuttings in Pogostemon cablin].

PubMed

Tang, Kun; Li, Ming; Dong, Shan; Li, Yun-qi; Huang, Jie-wen; Li, Long-ming

2014-06-01

To study the allelopathy effects of aquatic extracts from rhizospheric soil on the rooting and growth of stem cutting in Pogostemon cablin, and to reveal its mechanism initially. The changes of rhizogenesis characteristics and physic-biochemical during cutting seedlings were observed when using different concentration of aquatic extracts from rhizospheric soil. Aquatic extracts from rhizospheric soil had significant inhibitory effects on rooting rate, root number, root length, root activity, growth rate of cutting with increasing concentrations of tissue extracts; The chlorophyll content of cutting seedlings were decreased, but content of MDA were increased, and activities of POD, PPO and IAAO in cutting seedlings were affected. Aquatic extracts from rhizospheric soil of Pogostemon cablin have varying degrees of inhibitory effects on the normal rooting and growth of stem cuttings.

Influence of culture media and environmental factors on mycelial growth and sporulation of Lasiodiplodia theobromae (Pat.) Griffon and Maubl.

PubMed

Saha, A; Mandal, P; Dasgupta, S; Saha, D

2008-05-01

Lasiodiplodia theobromae, a common tea (Camellia sinensis) pathogen, usually does not sporulate or sporulates poorly in common media, which makes spore production difficult. In this study the effects of culture media, carbon source, nitrogen source, temperature, pH and light on mycelial growth and sporulation were evaluated. Among several carbon sources tested, glucose and sucrose were found superior for growth. Potassium nitrate supplemented media showed maximum growth amongst the tested inorganic nitrogen sources while peptone produced maximum growth among the tested organic nitrogen sources. Tea root extract supplemented potato dextrose agar medium was found to be the most suitable for mycelial growth and sporulation of L. theobromae. The fungus grow at temperatures ranging from 40 to 36 degrees C, with optimum growth at 28 degrees C and no growth was noted at 40 degrees C. There was no significant effect of different light period on growth of L. theobromae, but light enhanced sporulation. The fungus grow at pH 3.0-8.0 and optimum growth was observed at pH 6.0. Tea root extract supplemented potato dextrose agar medium with pH 6.0 was the most suitable for production of conidia of L. theobromae at 28 degrees C. Hence this media may be recommended for inoculum production for further studies.

Comparison of Rooting Strategies to Explore Rock Fractures for Shallow Soil-Adapted Tree Species with Contrasting Aboveground Growth Rates: A Greenhouse Microcosm Experiment.

PubMed

Nie, Yunpeng; Chen, Hongsong; Ding, Yali; Yang, Jing; Wang, Kelin

2017-01-01

For tree species adapted to shallow soil environments, rooting strategies that efficiently explore rock fractures are important because soil water depletion occurs frequently. However, two questions: (a) to what extent shallow soil-adapted species rely on exploring rock fractures and (b) what outcomes result from drought stress, have rarely been tested. Therefore, based on the expectation that early development of roots into deep soil layers is at the cost of aboveground growth, seedlings of three tree species ( Cyclobalanopsis glauca, Delavaya toxocarpa , and Acer cinnamomifolium ) with distinct aboveground growth rates were selected from a typical shallow soil region. In a greenhouse experiment that mimics the basic features of shallow soil environments, 1-year-old seedlings were transplanted into simulated microcosms of shallow soil overlaying fractured bedrock. Root biomass allocation and leaf physiological activities, as well as leaf δ 13 C values were investigated and compared for two treatments: regular irrigation and repeated cycles of drought stress. Our results show that the three species differed in their rooting strategies in the context of encountering rock fractures, however, these strategies were not closely related to the aboveground growth rate. For the slowest-growing seedling, C. glauca , percentages of root mass in the fractures, as well as in the soil layer between soil and bedrock increased significantly under both treatments, indicating a specialized rooting strategy that facilitated the exploration of rock fractures. Early investment in deep root growth was likely critical to the establishment of this drought-vulnerable species. For the intermediate-growing, A. cinnamomifolium , percentages of root mass in the bedrock and interface soil layers were relatively low and exhibited no obvious change under either treatment. This limited need to explore rock fractures was compensated by a conservative water use strategy. For the fast-growing, D. toxocarpa , percentages of root mass in the bedrock and interface layers increased simultaneously under drought conditions, but not under irrigated conditions. This drought-induced rooting plasticity was associated with drought avoidance by this species. Although, root development might have been affected by the simulated microcosm, contrasting results among the three species indicated that efficient use of rock fractures is not a necessary or specialized strategy of shallow-soil adapted species. The establishment and persistence of these species relied on the mutual complementation between their species-specific rooting strategies and drought adaptations.

Mapping of sugar and amino acid availability in soil around roots with bacterial sensors of sucrose and tryptophan

PubMed

Jaeger; Lindow; Miller; Clark; Firestone

1999-06-01

We developed a technique to map the availability of sugars and amino acids along live roots in an intact soil-root matrix with native microbial soil flora and fauna present. It will allow us to study interactions between root exudates and soil microorganisms at the fine spatial scale necessary to evaluate mechanisms of nitrogen cycling in the rhizosphere. Erwinia herbicola 299R harboring a promoterless ice nucleation reporter gene, driven by either of two nutrient-responsive promoters, was used as a biosensor. Strain 299RTice exhibits tryptophan-dependent ice nucleation activity, while strain 299R(p61RYice) expresses ice nucleation activity proportional to sucrose concentration in its environment. Both biosensors exhibited up to 100-fold differences in ice nucleation activity in response to varying substrate abundance in culture. The biosensors were introduced into the rhizosphere of the annual grass Avena barbata and, as a control, into bulk soil. Neither strain exhibited significant ice nucleation activity in the bulk soil. Both tryptophan and sucrose were detected in the rhizosphere, but they showed different spatial patterns. Tryptophan was apparently most abundant in soil around roots 12 to 16 cm from the tip, while sucrose was most abundant in soil near the root tip. The largest numbers of bacteria (determined by acridine orange staining and direct microscopy) occurred near root sections with the highest apparent sucrose or tryptophan exudation. High sucrose availability at the root tip is consistent with leakage of photosynthate from immature, rapidly growing root tissues, while tryptophan loss from older root sections may result from lateral root perforation of the root epidermis.

Tree root dynamics in montane and sub-alpine mixed forest patches.

PubMed

Wang, Y; Kim, J H; Mao, Z; Ramel, M; Pailler, F; Perez, J; Rey, H; Tron, S; Jourdan, C; Stokes, A

2018-02-28

The structure of heterogeneous forests has consequences for their biophysical environment. Variations in the local climate significantly affect tree physiological processes. We hypothesize that forest structure also alters tree root elongation and longevity through temporal and spatial variations in soil temperature and water potential. We installed rhizotrons in paired vegetation communities of closed forest (tree islands) and open patches (canopy gaps), along a soil temperature gradient (elevations of 1400, 1700 and 2000 m) in a heterogeneous mixed forest. We measured the number of growing tree roots, elongation and mortality every month over 4 years. The results showed that the mean daily root elongation rate (RER) was not correlated with soil water potential but was significantly and positively correlated with soil temperature between 0 and 8 °C only. The RER peaked in spring, and a smaller peak was usually observed in the autumn. Root longevity was dependent on altitude and the season in which roots were initiated, and root diameter was a significant factor explaining much of the variability observed. The finest roots usually grew faster and had a higher risk of mortality in gaps than in closed forest. At 2000 m, the finest roots had a higher risk of mortality compared with the lower altitudes. The RER was largely driven by soil temperature and was lower in cold soils. At the treeline, ephemeral fine roots were more numerous, probably in order to compensate for the shorter growing season. Differences in soil climate and root dynamics between gaps and closed forest were marked at 1400 and 1700 m, but not at 2000 m, where canopy cover was more sparse. Therefore, heterogeneous forest structure and situation play a significant role in determining root demography in temperate, montane forests, mostly through impacts on soil temperature.

Characterizing root system characteristics with Electrical resistivity Tomography: a virtual rhizotron simulation

NASA Astrophysics Data System (ADS)

Rao, Sathyanarayan; Ehosioke, Solomon; Lesparre, Nolwenn; Nguyen, Frédéric; Javaux, Mathieu

2017-04-01

Electrical Resistivity Tomography (ERT) is more and more used for monitoring soil water content in a cropped soil. Yet, the impact of roots on the signal is often neglected and a topic of controversy. In several studies related to soil-root system, it has been showed that the measured root mass density statistically correlates with the electrical conductivity (EC) data obtained from ERT. In addition, some studies suggest that some roots are more electrically conductive than soil for most water content. Thus, higher EC of roots suggest that it might have a measurable impact on ERT signals. In this work, virtual rhizotrons are simulated using the software package called R-SWMS that solves water and solute transport in plant root-soil system, including root growth. The distribution of water content obtained from R-SWMS simulation is converted into EC data using pedo-physical models. The electrical properties of roots and rhizosphere are explicitly included in the EC data to form a conductivity map (CM) with a very detailed spatial resolution. Forward ERT simulations is then carried out for CM generated for various root architectures and soil conditions to study the impact of roots on ERT forward (current and voltage patterns) and inverse solutions. It is demonstrated that under typical injection schemes with lateral electrodes, root system is hardly measurable. However, it is showed that adding electrodes and constraints on the ERT inversion based on root architecture help quantifying root system mass and extent.

Responses of nutrient capture and fine root morphology of subalpine coniferous tree Picea asperata to nutrient heterogeneity and competition

PubMed Central

Nan, Hongwei; Liang, Jin; Cheng, Xinying; Zhao, ChunZhang; Yin, HuaJun; Yin, ChunYing; Liu, Qing

2017-01-01

Investigating the responses of trees to the heterogeneous distribution of nutrients in soil and simultaneous presence of neighboring roots could strengthen the understanding of an influential mechanism on tree growth and provide a scientific basis for forest management. Here, we conducted two split-pot experiments to investigate the effects of nutrient heterogeneity and intraspecific competition on the fine root morphology and nutrient capture of Picea asperata. The results showed that P. asperata efficiently captured nutrients by increasing the specific root length (SRL) and specific root area (SRA) of first-and second-order roots and decreasing the tissue density of first-order roots to avoid competition for resources and space with neighboring roots. The nutrient heterogeneity and addition of fertilization did not affect the fine root morphology, but enhanced the P and K concentrations in the fine roots in the absence of a competitor. On the interaction between nutrient heterogeneity and competition, competition decreased the SRL and SRA but enhanced the capture of K under heterogeneous soil compared with under homogeneous soil. Additionally, the P concentration, but not the K concentration, was linearly correlated to root morphology in heterogeneous soil, even when competition was present. The results suggested that root morphological features were only stimulated when the soil nutrients were insufficient for plant growth and the nutrients accumulations by root were mainly affected by the soil nutrients more than the root morphology. PMID:29095947

Effect of tree roots on a shear zone: modeling reinforced shear stress.

Treesearch

Kazutoki Abe; Robert R. Ziemer

1991-01-01

Tree roots provide important soil reinforcement that impoves the stability of hillslopes. After trees are cut and roots begin to decay, the frequency of slope failures can increase. To more fully understand the mechanics of how tree roots reinforce soil, fine sandy soil containing pine roots was placed in a large shear box in horizontal layers and sheared across a...

[Effects of tree species diversity on fine-root biomass and morphological characteristics in subtropical Castanopsis carlesii forests].

PubMed

Wang, Wei-Wei; Huang, Jin-Xue; Chen, Feng; Xiong, De-Cheng; Lu, Zheng-Li; Huang, Chao-Chao; Yang, Zhi-Jie; Chen, Guang-Shui

2014-02-01

Fine roots in the Castanopsis carlesii plantation forest (MZ), the secondary forest of C. carlesii through natural regeneration with anthropogenic promotion (AR), and the secondary forest of C. carlesii through natural regeneration (NR) in Sanming City, Fujian Province, were estimated by soil core method to determine the influence of tree species diversity on biomass, vertical distribution and morphological characteristics of fine roots. The results showed that fine root biomass for the 0-80 cm soil layer in the MZ, AR and NR were (182.46 +/- 10.81), (242.73 +/- 17.85) and (353.11 +/- 16.46) g x m(-2), respectively, showing an increased tendency with increasing tree species diversity. In the three forests, fine root biomass was significantly influenced by soil depth, and fine roots at the 0-10 cm soil layer accounted for more than 35% of the total fine root biomass. However, the interaction of stand type and soil depth on fine-root distribution was not significant, indicating no influence of tree species diversity on spatial niche segregation in fine roots. Root surface area density and root length density were the highest in NR and lowest in the MZ. Specific root length was in the order of AR > MZ > NR, while specific root surface area was in the order of NR > MZ > AR. There was no significant interaction of stand type and soil depth on specific root length and specific root surface area. Fine root morphological plasticity at the stand level had no significant response to tree species diversity.

Soil microbial biomass and root growth in Bt and non-Bt cotton

NASA Astrophysics Data System (ADS)

Tan, D. K. Y.; Broughton, K.; Knox, O. G.; Hulugalle, N. R.

2012-04-01

The introduction of transgenic Bacillus thuringiensis (Bt) cotton (Gossypium hirsutum L.) has had a substantial impact on pest management in the cotton industry. While there has been substantial research done on the impact of Bt on the above-ground parts of the cotton plant, less is known about the effect of Bt genes on below ground growth of cotton and soil microbial biomass. The aim of this research was to test the hypothesis that Bt [Sicot 80 BRF (Bollgard II Roundup Ready Flex®)] and non-Bt [Sicot 80 RRF (Roundup Ready Flex®)] transgenic cotton varieties differ in root growth and root turnover, carbon indices and microbial biomass. A field experiment was conducted in Narrabri, north-western NSW. The experimental layout was a randomised block design and used minirhizotron and core break and root washing methods to measure cotton root growth and turnover during the 2008/09 season. Root growth in the surface 0-0.1 m of the soil was measured using the core break and root washing methods, and that in the 0.1 to 1 m depth was measured with a minirhizotron and an I-CAP image capture system. These measurements were used to calculate root length per unit area, root carbon added to the soil through intra-seasonal root death, carbon in roots remaining at the end of the season and root carbon potentially added to the soil. Microbial biomass was also measured using the ninhydrin reactive N method. Root length densities and length per unit area of non-Bt cotton were greater than Bt cotton. There were no differences in root turnover between Bt and non-Bt cotton at 0-1 m soil depth, indicating that soil organic carbon stocks may not be affected by cotton variety. Cotton variety did not have an effect on soil microbial biomass. The results indicate that while there are differences in root morphology between Bt and non-Bt cotton, these do not change the carbon turnover dynamics in the soil.

Soil moisture--a regulator of arbuscular mycorrhizal fungal community assembly and symbiotic phosphorus uptake.

PubMed

Deepika, Sharma; Kothamasi, David

2015-01-01

Multiple species of arbuscular mycorrhizal fungi (AMF) can colonize roots of an individual plant species but factors which determine the selection of a particular AMF species in a plant root are largely unknown. The present work analysed the effects of drought, flooding and optimal soil moisture (15-20 %) on AMF community composition and structure in Sorghum vulgare roots, using PCR-RFLP. Rhizophagus irregularis (isolate BEG 21), and rhizosphere soil (mixed inoculum) of Heteropogon contortus, a perennial C4 grass, collected from the semi-arid Delhi ridge, were used as AMF inocula. Soil moisture functioned as an abiotic filter and affected AMF community assembly inside plant roots by regulating AMF colonization and phylotype diversity. Roots of plants in flooded soils had lowest AMF diversity whilst root AMF diversity was highest under the soil moisture regime of 15-20 %. Although plant biomass was not affected, root P uptake was significantly influenced by soil moisture. Plants colonized with R. irregularis or mixed AMF inoculum showed higher root P uptake than non-mycorrhizal plants in drought and control treatments. No differences in root P levels were found in the flooded treatment between plants colonized with R. irregularis and non-mycorrhizal plants, whilst under the same treatment, root P uptake was lower in plants colonized with mixed AMF inoculum than in non-mycorrhizal plants.

Soil moisture depletion under simulated drought in the Amazon: impacts on deep root uptake.

PubMed

Markewitz, Daniel; Devine, Scott; Davidson, Eric A; Brando, Paulo; Nepstad, Daniel C

2010-08-01

*Deep root water uptake in tropical Amazonian forests has been a major discovery during the last 15 yr. However, the effects of extended droughts, which may increase with climate change, on deep soil moisture utilization remain uncertain. *The current study utilized a 1999-2005 record of volumetric water content (VWC) under a throughfall exclusion experiment to calibrate a one-dimensional model of the hydrologic system to estimate VWC, and to quantify the rate of root uptake through 11.5 m of soil. *Simulations with root uptake compensation had a relative root mean square error (RRMSE) of 11% at 0-40 cm and < 5% at 350-1150 cm. The simulated contribution of deep root uptake under the control was c. 20% of water demand from 250 to 550 cm and c. 10% from 550 to 1150 cm. Furthermore, in years 2 (2001) and 3 (2002) of throughfall exclusion, deep root uptake increased as soil moisture was available but then declined to near zero in deep layers in 2003 and 2004. *Deep root uptake was limited despite high VWC (i.e. > 0.30 cm(3) cm(-3)). This limitation may partly be attributable to high residual water contents (theta(r)) in these high-clay (70-90%) soils or due to high soil-to-root resistance. The ability of deep roots and soils to contribute increasing amounts of water with extended drought will be limited.

An Evaluation of the Environmental Fate and behavior of Munitions Materiel (TNT, RDX) in Soil and Plant Systems. Environmental Fate and behavior of TNT

DTIC Science & Technology

1989-08-01

to which roots are exposed. Thus, soil sorption will control the concentration of soil - solution TNT and/or TNT-derived residues available for root... soil - solution TNT and/or TNT-derived residues available for root uptake. Hydroponic systems were used to calibrate subsequent soil studies and to

The effect of Piriformospora indica on the root development of maize (Zea mays L.) and remediation of petroleum contaminated soil.

PubMed

Zamani, Javad; Hajabbasi, Mohammad Ali; Alaie, Ebrahim; Sepehri, Mozhgan; Leuchtmann, Adrian; Schulin, Rainer

2016-01-01

As the depth of soil petroleum contamination can vary substantially under field conditions, a rhizotron experiment was performed to investigate the influence of endophyte, P. indica, on maize growth and degradation of petroleum components in a shallow and a deep-reaching subsurface layer of a soil. For control, a treatment without soil contamination was also included. The degree in contamination and the depth to which it extended had a strong effect on the growth of the plant roots. Contaminated soil layers severely inhibited root growth thus many roots preferred to bypass the shallow contaminated layer and grow in the uncontaminated soil. While the length and branching pattern of these roots were similar to those of uncontaminated treatment. Inoculation of maize with P. indica could improve root distribution and root and shoot growth in all three contamination treatments. This inoculation also enhanced petroleum degradation in soil, especially in the treatment with deep-reaching contamination, consequently the accumulation of petroleum hydrocarbons (PAHs) in the plant tissues were increased.

Assessment of grass root effects on soil piping in sandy soils using the pinhole test

NASA Astrophysics Data System (ADS)

Bernatek-Jakiel, Anita; Vannoppen, Wouter; Poesen, Jean

2017-10-01

Soil piping is an important land degradation process that occurs in a wide range of environments. Despite an increasing number of studies on this type of subsurface erosion, the impact of vegetation on piping erosion is still unclear. It can be hypothesized that vegetation, and in particular plant roots, may reduce piping susceptibility of soils because roots of vegetation also control concentrated flow erosion rates or shallow mass movements. Therefore, this paper aims to assess the impact of grass roots on piping erosion susceptibility of a sandy soil. The pinhole test was used as it provides quantitative data on pipeflow discharge, sediment concentration and sediment discharge. Tests were conducted at different hydraulic heads (i.e., 50 mm, 180 mm, 380 mm and 1020 mm). Results showed that the hydraulic head was positively correlated with pipeflow discharge, sediment concentration and sediment discharge, while the presence of grass roots (expressed as root density) was negatively correlated with these pipeflow characteristics. Smaller sediment concentrations and sediment discharges were observed in root-permeated samples compared to root-free samples. When root density exceeds 0.5 kg m- 3, piping erosion rates decreased by 50% compared to root-free soil samples. Moreover, if grass roots are present, the positive correlation between hydraulic head and both sediment discharge and sediment concentration is less pronounced, demonstrating that grass roots become more effective in reducing piping erosion rates at larger hydraulic heads. Overall, this study demonstrates that grass roots are quite efficient in reducing piping erosion rates in sandy soils, even at high hydraulic head (> 1 m). As such, grass roots may therefore be used to efficiently control piping erosion rates in topsoils.

Relationship between root water uptake and soil respiration: A modeling perspective

NASA Astrophysics Data System (ADS)

Teodosio, Bertrand; Pauwels, Valentijn R. N.; Loheide, Steven P.; Daly, Edoardo

2017-08-01

Soil moisture affects and is affected by root water uptake and at the same time drives soil CO2 dynamics. Selecting root water uptake formulations in models is important since this affects the estimation of actual transpiration and soil CO2 efflux. This study aims to compare different models combining the Richards equation for soil water flow to equations describing heat transfer and air-phase CO2 production and flow. A root water uptake model (RWC), accounting only for root water compensation by rescaling water uptake rates across the vertical profile, was compared to a model (XWP) estimating water uptake as a function of the difference between soil and root xylem water potential; the latter model can account for both compensation (XWPRWC) and hydraulic redistribution (XWPHR). Models were compared in a scenario with a shallow water table, where the formulation of root water uptake plays an important role in modeling daily patterns and magnitudes of transpiration rates and CO2 efflux. Model simulations for this scenario indicated up to 20% difference in the estimated water that transpired over 50 days and up to 14% difference in carbon emitted from the soil. The models showed reduction of transpiration rates associated with water stress affecting soil CO2 efflux, with magnitudes of soil CO2 efflux being larger for the XWPHR model in wet conditions and for the RWC model as the soil dried down. The study shows the importance of choosing root water uptake models not only for estimating transpiration but also for other processes controlled by soil water content.

Soil moisture causes dynamic adjustments to root reinforcement that reduce slope stability

Treesearch

Tristram C. Hales; Chelcy F. Miniat

2017-01-01

In steep soil-mantled landscapes, the initiation of shallow landslides is strongly controlled by the distribution of vegetation, whose roots reinforce the soil. The magnitude of root reinforcement depends on the number, diameter distribution, orientation and the mechanical properties of roots that cross potential failure planes. Understanding how these...

Water distribution at the root-soil interface: is there more water next to roots?

NASA Astrophysics Data System (ADS)

Carminati, A.; Moradi, A.; Oswald, S.; Vetterlein, D.; Weller, U.; Vogel, H.-J.

2009-04-01

Plants are big water movers and have a significant impact on soil water dynamics as well as on the global water cycle. Despite the relevance of root water uptake in terrestrial ecology, the movement of water from soil to roots still presents important open questions, e.g the following two. Which are the properties of the soil near the roots? And what effect do these properties have on soil plant water relations? Most models are based on brute-force spatial averaging of soil properties and assume that the bulk soil has the same properties as the rhizosphere. However, there is evidence in the literature that the rhizosphere has specific properties that may affect water and nutrient uptake (Young 1995, Gregory 2007). In order to investigate the rhizosphere hydraulic properties and their effect on soil plant water relations, we used neutron radiography and neutron tomography to image the water content distribution in soils during plant transpiration. Rectangular (quasi-2D) and cylindrical containers were filled with sandy soil and planted with lupins (Lupinus albus). Three weeks after planting, the samples were equilibrated at water potentials of -10 and 30 hPa and have been imaged for 5 days at intervals of 6 hours. At day 5 the samples were irrigated again via capillary rise and the water distribution was monitored for 4 more days. During the first day of the drying period, regions of water depletion formed around the central part of the tap root where first order laterals were present. As the soil dried up, the picture changed: instead of less water around the roots, as commonly supposed by models, we observed that more water was present around the lateral roots. Interestingly, these regions during drying were retaining high water content, but after irrigation remained markedly drier than the bulk soil. Our hypothesis is that high water content near roots during drying and lower water content during rewetting are explained by the presence of bio-polymers exuded by roots forming a hydrogel that consists of up to 99% water at very negative water potentials (Read et al. 1999). Thanks to its high water holding capacity, this hydrogel maintains a continuous hydraulic pathway across soil and roots for an extended period of time during drying. During rewetting it adversely affects water redistribution, like a storage that needs time to fill up again. These data show for the first time in situ the potential role of mucilage in controlling water dynamics in the rhizosphere and consequences for plant water extraction. Gregory P J, Roots, rhizosphere and soil: the route to a better understanding of soil science? European Journal of Soil Science, 57: 2-12, 2006. Read D P, Gregory P J, and Bell A E. Physical properties of axenic maize root mucilage. Plant and Soil, 211: 87-91, 1999. Young I M. Variation in moisture contents between bulk soil and the rhizosheath of wheat. New Phytologist, 130: 135-139, 1995.

[Fine root biomass and production of four vegetation types in Loess Plateau, China].

PubMed

Deng, Qiang; Li, Ting; Yuan, Zhi-You; Jiao, Feng

2014-11-01

Fine roots (≤ 2 mm) play a major role in biogeochemical cycling in ecosystems. By the methods of soil cores and ingrowth soil cores, we studied the biomass and annual production of fine roots in 0-40 cm soil layers of four main vegetation types, i. e. , Robinia pseudoacacia plantation, deciduous shrubs, abandoned grassland, and Artemisia desertorum community in Loess Plateau, China. The spatial patterns of fine root biomass and production were negatively associated with latitudes. The fine root biomass in the 0-40 cm soil layer was in the order of deciduous shrubs (220 g · m(-2)), R. pseudoacacia plantation (163 g · m(-2)), abandoned grassland (162 g · m(-2)) and A. desertorum community (79 g · m(-2)). The proportion of ≤ 1 mm fine root biomass (74.1%) in the 0-40 cm soil layer of abandoned grassland was significantly higher than those in the other three vegetation types. The fine root biomass of the four vegetation types was mainly distributed in the 0-10 cm soil layer and decreased with soil depth. The proportion of fine root biomass (44.1%) in the 0-10 cm soil layer of abandoned grassland was significantly higher than those in other three vegetation types. The fine root productions of four vegetation types were in the order of abandoned grassland (315 g · m(-2) · a(-1)) > deciduous shrubs (249 g · m(-2) a(-1)) > R. pseudoacacia plantation (219 g · m(-2) · a(-1)) > A. desertorum community (115 g · m(-2) · a(-1)), and mainly concentrated in the 0-10 cm top soil layer and decreased with the soil depth. The proportion of the annual production (40.4%) in the 0-10 cm soil layer was the highest in abandoned grassland. Fine roots of abandoned grassland turned over faster than those from the other three vegetation types.

Role of dietary polyphenols in attenuating brain edema and cell swelling in cerebral ischemia

USDA-ARS?s Scientific Manuscript database

Polyphenols are natural substances with variable phenolic structures and are enriched in vegetables, fruits, grains, bark, roots, tea, and wine. There are over 8000 polyphenolic structures identified in plants, but edible plants contain only several hundred polyphenolic structures. Recent interest...

Dietary polyphenols exert neuroprotective effects by attenuating neuronal and astrocytic damage in cerebral ischemia

USDA-ARS?s Scientific Manuscript database

Polyphenols are natural substances with variable phenolic structures and are found in vegetables, fruits, grains, bark, roots, tea, and wine. There are over 8000 polyphenolic structures identified in plants, but edible plants contain only several hundred polyphenolic structures. Recent interest in...

Can diversity in root architecture explain plant water use efficiency? A modeling study

PubMed Central

Tron, Stefania; Bodner, Gernot; Laio, Francesco; Ridolfi, Luca; Leitner, Daniel

2015-01-01

Drought stress is a dominant constraint to crop production. Breeding crops with adapted root systems for effective uptake of water represents a novel strategy to increase crop drought resistance. Due to complex interaction between root traits and high diversity of hydrological conditions, modeling provides important information for trait based selection. In this work we use a root architecture model combined with a soil-hydrological model to analyze whether there is a root system ideotype of general adaptation to drought or water uptake efficiency of root systems is a function of specific hydrological conditions. This was done by modeling transpiration of 48 root architectures in 16 drought scenarios with distinct soil textures, rainfall distributions, and initial soil moisture availability. We find that the efficiency in water uptake of root architecture is strictly dependent on the hydrological scenario. Even dense and deep root systems are not superior in water uptake under all hydrological scenarios. Our results demonstrate that mere architectural description is insufficient to find root systems of optimum functionality. We find that in environments with sufficient rainfall before the growing season, root depth represents the key trait for the exploration of stored water, especially in fine soils. Root density, instead, especially near the soil surface, becomes the most relevant trait for exploiting soil moisture when plant water supply is mainly provided by rainfall events during the root system development. We therefore concluded that trait based root breeding has to consider root systems with specific adaptation to the hydrology of the target environment. PMID:26412932

Can diversity in root architecture explain plant water use efficiency? A modeling study.

PubMed

Tron, Stefania; Bodner, Gernot; Laio, Francesco; Ridolfi, Luca; Leitner, Daniel

2015-09-24

Drought stress is a dominant constraint to crop production. Breeding crops with adapted root systems for effective uptake of water represents a novel strategy to increase crop drought resistance. Due to complex interaction between root traits and high diversity of hydrological conditions, modeling provides important information for trait based selection. In this work we use a root architecture model combined with a soil-hydrological model to analyze whether there is a root system ideotype of general adaptation to drought or water uptake efficiency of root systems is a function of specific hydrological conditions. This was done by modeling transpiration of 48 root architectures in 16 drought scenarios with distinct soil textures, rainfall distributions, and initial soil moisture availability. We find that the efficiency in water uptake of root architecture is strictly dependent on the hydrological scenario. Even dense and deep root systems are not superior in water uptake under all hydrological scenarios. Our results demonstrate that mere architectural description is insufficient to find root systems of optimum functionality. We find that in environments with sufficient rainfall before the growing season, root depth represents the key trait for the exploration of stored water, especially in fine soils. Root density, instead, especially near the soil surface, becomes the most relevant trait for exploiting soil moisture when plant water supply is mainly provided by rainfall events during the root system development. We therefore concluded that trait based root breeding has to consider root systems with specific adaptation to the hydrology of the target environment.

[Effects of soil wetting pattern on the soil water-thermal environment and cotton root water consumption under mulched drip irrigation].

PubMed

Li, Dong-wei; Li, Ming-si; Liu, Dong; Lyu, Mou-chao; Jia, Yan-hui

2015-08-01

Abstract: To explore the effects of soil wetting pattern on soil water-thermal environment and water consumption of cotton root under mulched drip irrigation, a field experiment with three drip intensities (1.69, 3.46 and 6.33 L · h(-1)), was carried out in Shihezi, Xinjiang Autonomous Region. The soil matric potential, soil temperature, cotton root distribution and water consumption were measured during the growing period of cotton. The results showed that the main factor influencing the soil temperature of cotton under plastic mulch was sunlight. There was no significant difference in the soil temperature and root water uptake under different treatments. The distribution of soil matrix suction in cotton root zone under plastic mulch was more homogeneous under ' wide and shallow' soil wetting pattern (W633). Under the 'wide and shallow' soil wetting pattern, the average difference of cotton root water consumption between inner row and outer row was 0.67 mm · d(-1), which was favorable to the cotton growing trimly at both inner and outer rows; for the 'narrow and deep' soil wetting pattern (W169), the same index was 0.88 mm · d(-1), which was unfavorable to cotton growing uniformly at both inner and outer rows. So, we should select the broad-shallow type soil wetting pattern in the design of drip irrigation under mulch.

Soil-roots Strength Performance of Extensive Green Roof by Using Axonopus Compressus

NASA Astrophysics Data System (ADS)

Yusoff, N. A.; Ramli, M. N.; Chik, T. N. T.; Ahmad, H.; Abdullah, M. F.; Kasmin, H.; Embong, Z.

2016-07-01

Green roof technology has been proven to provide potential environmental benefits including improved building thermal performance, removal of air pollution and reduced storm water runoff. Installation of green roof also involved soil element usage as a plant growth medium which creates several interactions between both strands. This study was carried out to investigate the soil-roots strength performance of green roof at different construction period up to 4 months. Axonopus compressus (pearl grass) was planted in a ExE test plot with a designated suitable soil medium. Direct shear test was conducted for each plot to determine the soil shear strength according to different construction period. In addition, some basic geotechnical testing also been carried out. The results showed that the shear strength of soil sample increased over different construction period of 1st, 2nd, 3rd and 4th month with average result 3.81 kPa, 5.55 kPa, 6.05 kPa and 6.48 kPa respectively. Shear strength of rooted soil samples was higher than the soil samples without roots (control sample). In conclusion, increment of soil-roots shear strength was due to root growth over the time. The soil-roots shear strength development of Axonopus compressus can be expressed in a linear equation as: y = 0.851x + 3.345, where y = shear stress and x = time.

SMERGE: A multi-decadal root-zone soil moisture product for CONUS

NASA Astrophysics Data System (ADS)

Crow, W. T.; Dong, J.; Tobin, K. J.; Torres, R.

2017-12-01

Multi-decadal root-zone soil moisture products are of value for a range of water resource and climate applications. The NASA-funded root-zone soil moisture merging project (SMERGE) seeks to develop such products through the optimal merging of land surface model predictions with surface soil moisture retrievals acquired from multi-sensor remote sensing products. This presentation will describe the creation and validation of a daily, multi-decadal (1979-2015), vertically-integrated (both surface to 40 cm and surface to 100 cm), 0.125-degree root-zone product over the contiguous United States (CONUS). The modeling backbone of the system is based on hourly root-zone soil moisture simulations generated by the Noah model (v3.2) operating within the North American Land Data Assimilation System (NLDAS-2). Remotely-sensed surface soil moisture retrievals are taken from the multi-sensor European Space Agency Climate Change Initiative soil moisture data set (ESA CCI SM). In particular, the talk will detail: 1) the exponential smoothing approach used to convert surface ESA CCI SM retrievals into root-zone soil moisture estimates, 2) the averaging technique applied to merge (temporally-sporadic) remotely-sensed with (continuous) NLDAS-2 land surface model estimates of root-zone soil moisture into the unified SMERGE product, and 3) the validation of the SMERGE product using long-term, ground-based soil moisture datasets available within CONUS.

Prediction of Root Zone Soil Moisture using Remote Sensing Products and In-Situ Observation under Climate Change Scenario

NASA Astrophysics Data System (ADS)

Singh, G.; Panda, R. K.; Mohanty, B.

2015-12-01

Prediction of root zone soil moisture status at field level is vital for developing efficient agricultural water management schemes. In this study, root zone soil moisture was estimated across the Rana watershed in Eastern India, by assimilation of near-surface soil moisture estimate from SMOS satellite into a physically-based Soil-Water-Atmosphere-Plant (SWAP) model. An ensemble Kalman filter (EnKF) technique coupled with SWAP model was used for assimilating the satellite soil moisture observation at different spatial scales. The universal triangle concept and artificial intelligence techniques were applied to disaggregate the SMOS satellite monitored near-surface soil moisture at a 40 km resolution to finer scale (1 km resolution), using higher spatial resolution of MODIS derived vegetation indices (NDVI) and land surface temperature (Ts). The disaggregated surface soil moisture were compared to ground-based measurements in diverse landscape using portable impedance probe and gravimetric samples. Simulated root zone soil moisture were compared with continuous soil moisture profile measurements at three monitoring stations. In addition, the impact of projected climate change on root zone soil moisture were also evaluated. The climate change projections of rainfall were analyzed for the Rana watershed from statistically downscaled Global Circulation Models (GCMs). The long-term root zone soil moisture dynamics were estimated by including a rainfall generator of likely scenarios. The predicted long term root zone soil moisture status at finer scale can help in developing efficient agricultural water management schemes to increase crop production, which lead to enhance the water use efficiency.

Phosphorus acquisition by citrate- and phytase-exuding Nicotiana tabacum plant mixtures depends on soil phosphorus availability and root intermingling.

PubMed

Giles, Courtney D; Richardson, Alan E; Cade-Menun, Barbara J; Mezeli, Malika M; Brown, Lawrie K; Menezes-Blackburn, Daniel; Darch, Tegan; Blackwell, Martin Sa; Shand, Charles A; Stutter, Marc I; Wendler, Renate; Cooper, Patricia; Lumsdon, David G; Wearing, Catherine; Zhang, Hao; Haygarth, Philip M; George, Timothy S

2018-03-02

Citrate and phytase root exudates contribute to improved phosphorus (P) acquisition efficiency in Nicotiana tabacum (tobacco) when both exudates are produced in a P deficient soil. To test the importance of root intermingling in the interaction of citrate and phytase exudates, Nicotiana tabacum plant-lines with constitutive expression of heterologous citrate (Cit) or fungal phytase (Phy) exudation traits were grown under two root treatments (roots separated or intermingled) and in two soils with contrasting soil P availability. Complementarity of plant mixtures varying in citrate efflux rate and mobility of the expressed phytase in soil was determined based on plant biomass and P accumulation. Soil P composition was evaluated using solution 31 P NMR spectroscopy. In the soil with limited available P, positive complementarity occurred in Cit+Phy mixtures with roots intermingled. Root separation eliminated positive interactions in mixtures expressing the less mobile phytase (Aspergillus niger PhyA) whereas positive complementarity persisted in mixtures that expressed the more mobile phytase (Peniophora lycii PhyA). Soils from Cit+Phy mixtures contained less inorganic P and more organic P compared to monocultures. Exudate-specific strategies for the acquisition of soil P were most effective in P-limited soil and depended on citrate efflux rate and the relative mobility of the expressed phytase in soil. Plant growth and soil P utilization in plant systems with complementary exudation strategies are expected to be greatest where exudates persist in soil and are expressed synchronously in space and time. This article is protected by copyright. All rights reserved.

An in situ approach to detect tree root ecology: linking ground-penetrating radar imaging to isotope-derived water acquisition zones

PubMed Central

Isaac, Marney E; Anglaaere, Luke C N

2013-01-01

Tree root distribution and activity are determinants of belowground competition. However, studying root response to environmental and management conditions remains logistically challenging. Methodologically, nondestructive in situ tree root ecology analysis has lagged. In this study, we tested a nondestructive approach to determine tree coarse root architecture and function of a perennial tree crop, Theobroma cacao L., at two edaphically contrasting sites (sandstone and phyllite–granite derived soils) in Ghana, West Africa. We detected coarse root vertical distribution using ground-penetrating radar and root activity via soil water acquisition using isotopic matching of δ18O plant and soil signatures. Coarse roots were detected to a depth of 50 cm, however, intraspecifc coarse root vertical distribution was modified by edaphic conditions. Soil δ18O isotopic signature declined with depth, providing conditions for plant–soil δ18O isotopic matching. This pattern held only under sandstone conditions where water acquisition zones were identifiably narrow in the 10–20 cm depth but broader under phyllite–granite conditions, presumably due to resource patchiness. Detected coarse root count by depth and measured fine root density were strongly correlated as were detected coarse root count and identified water acquisition zones, thus validating root detection capability of ground-penetrating radar, but exclusively on sandstone soils. This approach was able to characterize trends between intraspecific root architecture and edaphic-dependent resource availability, however, limited by site conditions. This study successfully demonstrates a new approach for in situ root studies that moves beyond invasive point sampling to nondestructive detection of root architecture and function. We discuss the transfer of such an approach to answer root ecology questions in various tree-based landscapes. PMID:23762519

Water flow and solute transport in the soil-plant-atmosphere continuum: Upscaling from rhizosphere to root zone

NASA Astrophysics Data System (ADS)

Lazarovitch, Naftali; Perelman, Adi; Guerra, Helena; Vanderborght, Jan; Pohlmeier, Andreas

2016-04-01

Root water and nutrient uptake are among the most important processes considered in numerical models simulating water content and fluxes in the subsurface, as they control plant growth and production as well as water flow and nutrient transport out of the root zone. Root water uptake may lead to salt accumulation at the root-soil interface, resulting in rhizophere salt concentrations much higher than in the bulk soil. This salt accumulation is caused by soluble salt transport towards the roots by mass flow through the soil, followed by preferential adsorption of specific nutrients by active uptake, thereby excluding most other salts at the root-soil interface or in the root apoplast. The salinity buildup can lead to large osmotic pressure gradients across the roots thereby effectively reducing root water uptake. The initial results from rhizoslides (capillary paper growth system) show that sodium concentration is decreasing with distance from the root, compared with the bulk that remained more stable. When transpiration rate was decreased under high salinity levels, sodium concentration was more homogenous compared with low salinity levels. Additionally, sodium and gadolinium distributions were measured nondestructively around tomato roots using magnetic resonance imaging (MRI). This technique could also observe the root structure and water content around single roots. Results from the MRI confirm the solutes concentration pattern around roots and its relation to their initial concentration. We conclude that local water potentials at the soil-root interface differ from bulk potentials. These relative differences increase with decreasing root density, decreasing initial salt concentration and increasing transpiration rate. Furthermore, since climate may significantly influence plant response to salinity a dynamic climate-coupled salinity reduction functions are critical in while using macroscopic numerical models.

Interactions between soil and tree roots accelerate long-term soil carbon decomposition.

PubMed

Dijkstra, Feike A; Cheng, Weixin

2007-11-01

Decomposition of soil organic carbon (SOC) is the main process governing the release of CO(2) into the atmosphere from terrestrial systems. Although the importance of soil-root interactions for SOC decomposition has increasingly been recognized, their long-term effect on SOC decomposition remains poorly understood. Here we provide experimental evidence for a rhizosphere priming effect, in which interactions between soil and tree roots substantially accelerate SOC decomposition. In a 395-day greenhouse study with Ponderosa pine and Fremont cottonwood trees grown in three different soils, SOC decomposition in the planted treatments was significantly greater (up to 225%) than in soil incubations alone. This rhizosphere priming effect persisted throughout the experiment, until well after initial soil disturbance, and increased with a greater amount of root-derived SOC formed during the experiment. Loss of old SOC was greater than the formation of new C, suggesting that increased C inputs from roots could result in net soil C loss.

Conifer root proliferation after 20 years of soil compaction

Treesearch

Matt D. Busse; Gary O. Fiddler; Carol J. Shestak

2017-01-01

Soil compaction is known to limit plant growth by reducing soil macroporosity and restricting gas, water, and root movement. Recent evidence from study sites across the United States and Canada, however, suggests that tree growth is not universally affected by soil compaction from forest harvesting practices. Our observational study examined rooting patterns in mixed...

Assessment of bioavailability of heavy metal pollutants using soil isolates of Chlorella sp.

PubMed

Krishnamurti, Gummuluru S R; Subashchandrabose, Suresh R; Megharaj, Mallavarapu; Naidu, Ravi

2015-06-01

Biotests conducted with plants are presently used to estimate metal bioavailability in contaminated soils. But when plants are grown in soils, especially the plants with fine roots, root collection is easily biased and tedious. Indeed, at harvest, small amounts of soil can adhere to roots, resulting in overestimation of root metal content, and the finest roots are often discarded from the analysis because of their difficult and almost impossible recovery. This report presents a novel method for assessing the bioavailability of heavy metals in soils using microalgae. Two species of green unicellular microalgae were isolated from two highly contaminated soils and identified by phylogenetic and molecular evolutionary analyses as Chlorella sp. RBM and Chlorella sp. RHM. These two cultures were used to determine the metal uptake from metal-contaminated soils of South Australia as a novel, cost-effective, simple and rapid method for assessing the bioavailability of heavy metals in soils. The suggested method is an attempt to achieve a realistic estimate of bioavailability which overcomes the inherent drawback of root metal contamination in the bioavailability indices so far reported.

Root hairs increase root exudation and rhizosphere extension

NASA Astrophysics Data System (ADS)

Holz, Maire; Zarebandanadkouki, Mohsen; Kuzyakov, Yakov; Carmintati, Andrea

2017-04-01

Plant roots employ various mechanisms to increase their access to limited soil resources. An example of such strategies is the production of root hairs. Root hairs extend the root surface and therefore increase the access to nutrients. Additionally, carbon release from root hairs might facilitate nutrient uptake by spreading of carbon in the rhizosphere and enhancing microbial activity. The aim of this study was to test: i) how root hairs change the allocation of carbon in the soil-plant system; ii) whether root hairs exude carbon into the soil and iii) how differences in C release between plants with and without root hairs affect rhizosphere extension. We grew barley plants with and without root hairs (wild type: WT, bald root barley: brb) in rhizoboxes filled with a sandy soil. Root elongation was monitored over time. After 4 weeks of growth, plants were labelled with 14CO2. A filter paper was placed on the soil surface before labelling and was removed after 36 h. 14C imaging of the soil surface and of the filter paper was used to quantify the allocation of 14C into the roots and the exudation of 14C, respectively. Plants were sampled destructively one day after labeling to quantify 14C in the plant-soil system. 14CO2 release from soil over time (17 d) was quantified by trapping CO2 in NaOH with an additional subset of plants. WT and brb plants had a similar aboveground biomass and allocated similar amounts of 14C into shoots (170 KBq for WT; 152 KBq for brb) and roots one day after labelling. Biomass of root, rhizosphere soil as well as root elongation were lower for brb compared to the wild type. WT plants transported more C from the shoots to the roots (22.8% for WT; 13.8% for brb) and from the root into the rhizosphere (8.8% for WT 3.5% for brb). Yet lower amounts of 14CO2 were released from soil over time for WT. Radial and longitudinal rhizosphere extension was increased for WT compared to brb (4.7 vs. 2.6 mm; 5.6 vs. 3.1 cm). The total exudation which was estimated based on the grey values of the filter paper images was 1.6 times higher for WT compared to brb. After one month, brb plants performed as good as WT plants, presumably because nutrients and water were not limiting for young plants. Under nutrient limiting conditions higher C release as well as increased longitudinal and radial rhizosphere extension for WT may maintain higher nutrient accessibility compared to root hair free plants.

A new turn-on fluorimetric method for the rapid speciation of Cr(III)/Cr(VI) species in tea samples with rhodamine-based fluorescent reagent

NASA Astrophysics Data System (ADS)

Özyol, Esra; Saçmacı, Şerife; Saçmacı, Mustafa; Ülgen, Ahmet

2018-02-01

A new fluorimetric method with rhodamine-based fluorescent agent was developed for the rapid speciation of Cr(III)/Cr(VI) in tea, soil and water samples. The system, which utilizes a fluorescent reagent, was used for the first time after synthesis/characterization of 3‧,6‧-bis(diethylamino)-2-{[(1E)-(2,4-dimethoxyphenyl)methylene] amino}spiro[isoindole-1,9‧-xanthen]-3(2H)-one (BDAS). The reagent responds instantaneously at room temperature in a 1:1 stoichiometric manner to the amount of Cr(III). The selectivity of this system for Cr(III) over other metal ions is remarkably high, and its sensitivity is below 0.01 mg L- 1 in aqueous solutions which enables a simplification without any pretreatment of the real sample. The method has a wide linear range of 0.1-10 mg L- 1 and a detection limit of 0.15 μg L- 1 for Cr(III) while the relative standard deviation was 0.1% for 0.1 mg L- 1 Cr(III) concentration. The results of detection and recovery experiments for Cr(III) in tea, soil and water were satisfactory, indicating that the method has better feasibility and application potential in the routine determination and speciation of Cr(III)/Cr(VI). The results of analysis of the certified reference material (INCT-TL-1 tea sample and CWW-TM-D waste water) are in good agreement with the certified value.

Natural organic matter as electron acceptor: experimental evidence for its important role in anaerobic respiration

NASA Astrophysics Data System (ADS)

Lau, Maximilian Peter; Sander, Michael; Gelbrecht, Jörg; Hupfer, Michael

2014-05-01

Microbial respiration is a key driver of element cycling in oxic and anoxic environments. Upon depletion of oxygen as terminal electron acceptor (TEA), a number of anaerobic bacteria can employ alternative TEA for intracellular energy generation. Redox active quinone moieties in dissolved organic matter (DOM) are well known electron acceptors for microbial respiration. However, it remains unclear whether quinones in adsorbed and particulate OM accept electrons in a same way. In our studies we aim to understand the importance of natural organic matter (NOM) as electron acceptors for microbial energy gain and its possible implications for methanogenesis. Using a novel electrochemical approach, mediated electrochemical reduction and -oxidation, we can directly quantify reduced hydroquinone and oxidized quionone moieties in dissolved and particulate NOM samples. In a mesocosm experiment, we rewetted sediment and peat soil and followed electron transfer to the inorganic and organic electron acceptors over time. We found that inorganic and organic electron acceptor pools were depleted over the same timescales. More importantly, we showed that organic, NOM-associated electron accepting moieties represent as much as 21 40% of total TEA inventories. These findings support earlier studies that propose that the reduction of quinone moieties in particulate organic matter competitively suppresses methanogenesis in wetland soils. Our results indicate that electron transfer to organic, particulate TEA in inundated ecosystems has to be accounted for when establishing carbon budgets in and projecting greenhouse gas emissions from these systems.

Can thinning slash cause a nitrogen deficiency in pumice soils of central Oregon?

Treesearch

P.H. Cochran

1968-01-01

Decomposition of thinning slash deposited on the soil surface should have no direct adverse effect on the soil nitrogen available to higher plants in the pumice soil region. Decomposition of roots of cut trees would immobilize nitrogen in the soil immediately adjacent to the root during the decomposition period, which appears to be short for the smaller roots. However...

Life in the dark: Roots and how they regulate plant-soil interactions

NASA Astrophysics Data System (ADS)

Wu, Y.; Chou, C.; Peruzzo, L.; Riley, W. J.; Hao, Z.; Petrov, P.; Newman, G. A.; Versteeg, R.; Blancaflor, E.; Ma, X.; Dafflon, B.; Brodie, E.; Hubbard, S. S.

2017-12-01

Roots play a key role in regulating interactions between soil and plants, an important biosphere process critical for soil development and health, global food security, carbon sequestration, and the cycling of elements (water, carbon, nutrients, and environmental contaminants). However, their underground location has hindered studies of plant roots and the role they play in regulating plant-soil interactions. Technological limitations for root phenotyping and the lack of an integrated approach capable of linking root development, its environmental adaptation/modification with subsequent impact on plant health and productivity are major challenges faced by scientists as they seek to understand the plant's hidden half. To overcome these challenges, we combine novel experimental methods with numerical simulations, and conduct controlled studies to explore the dynamic growth of crop roots. We ask how roots adapt to and change the soil environment and their subsequent impacts on plant health and productivity. Specifically, our efforts are focused on (1) developing novel geophysical approaches for non-invasive plant root and rhizosphere characterization; (2) correlating root developments with key canopy traits indicative of plant health and productivity; (3) developing numerical algorithms for novel geophysical root signal processing; (4) establishing plant growth models to explore root-soil interactions and above and below ground traits co-variabilities; and (5) exploring how root development modifies rhizosphere physical, hydrological, and geochemical environments for adaptation and survival. Our preliminary results highlight the potential of using electro-geophysical methods to quantifying key rhizosphere traits, the capability of the ecosys model for mechanistic plant growth simulation and traits correlation exploration, and the combination of multi-physics and numerical approach for a systematic understanding of root growth dynamics, impacts on soil physicochemical environments, and plant health and productivity.

Using three-dimensional plant root architecture in models of shallow-slope stability.

PubMed

Danjon, Frédéric; Barker, David H; Drexhage, Michael; Stokes, Alexia

2008-05-01

The contribution of vegetation to shallow-slope stability is of major importance in landslide-prone regions. However, existing slope stability models use only limited plant root architectural parameters. This study aims to provide a chain of tools useful for determining the contribution of tree roots to soil reinforcement. Three-dimensional digitizing in situ was used to obtain accurate root system architecture data for mature Quercus alba in two forest stands. These data were used as input to tools developed, which analyse the spatial position of roots, topology and geometry. The contribution of roots to soil reinforcement was determined by calculating additional soil cohesion using the limit equilibrium model, and the factor of safety (FOS) using an existing slope stability model, Slip4Ex. Existing models may incorrectly estimate the additional soil cohesion provided by roots, as the spatial position of roots crossing the potential slip surface is usually not taken into account. However, most soil reinforcement by roots occurs close to the tree stem and is negligible at a distance >1.0 m from the tree, and therefore global values of FOS for a slope do not take into account local slippage along the slope. Within a forest stand on a landslide-prone slope, soil fixation by roots can be minimal between uniform rows of trees, leading to local soil slippage. Therefore, staggered rows of trees would improve overall slope stability, as trees would arrest the downward movement of soil. The chain of tools consisting of both software (free for non-commercial use) and functions available from the first author will enable a more accurate description and use of root architectural parameters in standard slope stability analyses.

Using Three-dimensional Plant Root Architecture in Models of Shallow-slope Stability

PubMed Central

Danjon, Frédéric; Barker, David H.; Drexhage, Michael; Stokes, Alexia

2008-01-01

Background The contribution of vegetation to shallow-slope stability is of major importance in landslide-prone regions. However, existing slope stability models use only limited plant root architectural parameters. This study aims to provide a chain of tools useful for determining the contribution of tree roots to soil reinforcement. Methods Three-dimensional digitizing in situ was used to obtain accurate root system architecture data for mature Quercus alba in two forest stands. These data were used as input to tools developed, which analyse the spatial position of roots, topology and geometry. The contribution of roots to soil reinforcement was determined by calculating additional soil cohesion using the limit equilibrium model, and the factor of safety (FOS) using an existing slope stability model, Slip4Ex. Key Results Existing models may incorrectly estimate the additional soil cohesion provided by roots, as the spatial position of roots crossing the potential slip surface is usually not taken into account. However, most soil reinforcement by roots occurs close to the tree stem and is negligible at a distance >1·0 m from the tree, and therefore global values of FOS for a slope do not take into account local slippage along the slope. Conclusions Within a forest stand on a landslide-prone slope, soil fixation by roots can be minimal between uniform rows of trees, leading to local soil slippage. Therefore, staggered rows of trees would improve overall slope stability, as trees would arrest the downward movement of soil. The chain of tools consisting of both software (free for non-commercial use) and functions available from the first author will enable a more accurate description and use of root architectural parameters in standard slope stability analyses. PMID:17766845

Plant and Root Growth Responses to Heterogeneous Supplies of Soil Water in Two Coastal Shrubs of California.

NASA Astrophysics Data System (ADS)

Cole, S.; Mahall, B. E.

2007-05-01

Much effort has been focused on identifying plant and root growth responses to heterogeneous supplies of soil nutrients. However, in many circumstances, soil water may limit plant growth and it too can have a patchy distribution. In our research we asked: 1) What is the ecological significance of soil moisture heterogeneity to plant growth in a California coastal dune habitat? 2) How does growth of whole plants and roots respond to soil moisture heterogeneity? and 3) Can roots of these species sense and grow towards moisture-rich areas (hydrotropism) in a natural medium? To address these questions: we conducted comparative field studies of water relations and growth of Artemisia californica and Eriogonum parvifolium; we performed a growth rate study of roots and plants in experimental pots with either patchy or homogeneous distributions of soil water; and we analyzed individual root growth in sand-filled observation chambers in response to moisture-rich patches and resultant soil water gradients. In the field, correlations between daily photosynthetic rates, active leaf display and predawn xylem pressure potentials (ΨPD) indicated that access to water limited growth in A. californica and E. parvifolium. These species, common in habit and habitat, differed in their ability to access water with E. parvifolium having overall higher ΨPD than A. californica (repeated measures ANOVA, P < 0.01). Our growth rate study revealed that patchy supplies of water did not reduce the relative growth rate or average size of E. parvifolium (two-tailed t-tests, P > 0.25). It appears that modified partitioning of growth both at the whole plant and root system level permitted E. parvifolium to maintain growth in patchy soil water conditions. We found that E. parvifolium increased allocation to roots and proliferated in moisture-rich patches in the patchy soil water treatment. Root length density and the proportion of root mass present in the patch was 20- to >100-fold greater in and near the moisture-rich patch than in a comparable but drier soil location (one-tailed matched pairs t-tests, P ≤ 0.05). While root hydrotropism could be a means by which plants are able to locate moisture-rich patches, from our chamber studies we found no compelling evidence for hydrotropic root behavior in seedlings of these two dune shrubs and suggest that roots instead may encounter patches of soil water serendipitously.

Phylogenetically structured traits in root systems influence arbuscular mycorrhizal colonization in woody angiosperms

DOE PAGES

Valverde-Barrantes, Oscar J.; Horning, Amber L.; Smemo, Kurt A.; ...

2016-02-10

In this study, there is little quantitative information about the relationship between root traits and the extent of arbuscular mycorrhizal fungi (AMF) colonization. We expected that ancestral species with thick roots will maximize AMF habitat by maintaining similar root traits across root orders (i.e., high root trait integration), whereas more derived species are expected to display a sharp transition from acquisition to structural roots. Moreover, we hypothesized that interspecific morphological differences rather than soil conditions will be the main driver of AMF colonization We analyzed 14 root morphological and chemical traits and AMF colonization rates for the first three rootmore » orders of 34 temperate tree species grown in two common gardens. We also collected associated soil to measure the effect of soil conditions on AMF colonization Results Thick-root magnoliids showed less variation in root traits along root orders than more-derived angiosperm groups. Variation in stele:root diameter ratio was the best indicator of AMF colonization within and across root orders. Root functional traits rather than soil conditions largely explained the variation in AMF colonization among species. In conclusion, not only the traits of first order but the entire structuring of the root system varied among plant lineages, suggesting alternative evolutionary strategies of resource acquisition. Understanding evolutionary pathways in below ground organs could open new avenues to understand tree species influence on soil carbon and nutrient cycling.« less

Phylogenetically structured traits in root systems influence arbuscular mycorrhizal colonization in woody angiosperms

DOE Office of Scientific and Technical Information (OSTI.GOV)

Valverde-Barrantes, Oscar J.; Horning, Amber L.; Smemo, Kurt A.

In this study, there is little quantitative information about the relationship between root traits and the extent of arbuscular mycorrhizal fungi (AMF) colonization. We expected that ancestral species with thick roots will maximize AMF habitat by maintaining similar root traits across root orders (i.e., high root trait integration), whereas more derived species are expected to display a sharp transition from acquisition to structural roots. Moreover, we hypothesized that interspecific morphological differences rather than soil conditions will be the main driver of AMF colonization We analyzed 14 root morphological and chemical traits and AMF colonization rates for the first three rootmore » orders of 34 temperate tree species grown in two common gardens. We also collected associated soil to measure the effect of soil conditions on AMF colonization Results Thick-root magnoliids showed less variation in root traits along root orders than more-derived angiosperm groups. Variation in stele:root diameter ratio was the best indicator of AMF colonization within and across root orders. Root functional traits rather than soil conditions largely explained the variation in AMF colonization among species. In conclusion, not only the traits of first order but the entire structuring of the root system varied among plant lineages, suggesting alternative evolutionary strategies of resource acquisition. Understanding evolutionary pathways in below ground organs could open new avenues to understand tree species influence on soil carbon and nutrient cycling.« less

Climate, soil and plant functional types as drivers of global fine-root trait variation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Freschet, Grégoire T.; Valverde-Barrantes, Oscar J.; Tucker, Caroline M.

Ecosystem functioning relies heavily on below-ground processes, which are largely regulated by plant fine-roots and their functional traits. However, our knowledge of fine-root trait distribution relies to date on local- and regional-scale studies with limited numbers of species, growth forms and environmental variation. We compiled a world-wide fine-root trait dataset, featuring 1115 species from contrasting climatic areas, phylogeny and growth forms to test a series of hypotheses pertaining to the influence of plant functional types, soil and climate variables, and the degree of manipulation of plant growing conditions on species fine-root trait variation. Most particularly, we tested the competing hypothesesmore » that fine-root traits typical of faster return on investment would be most strongly associated with conditions of limiting versus favourable soil resource availability. We accounted for both data source and species phylogenetic relatedness. We demonstrate that: (i) Climate conditions promoting soil fertility relate negatively to fine-root traits favouring fast soil resource acquisition, with a particularly strong positive effect of temperature on fine-root diameter and negative effect on specific root length (SRL), and a negative effect of rainfall on root nitrogen concentration; (ii) Soil bulk density strongly influences species fine-root morphology, by favouring thicker, denser fine-roots; (iii) Fine-roots from herbaceous species are on average finer and have higher SRL than those of woody species, and N 2-fixing capacity positively relates to root nitrogen; and (iv) Plants growing in pots have higher SRL than those grown in the field. Synthesis. This study reveals both the large variation in fine-root traits encountered globally and the relevance of several key plant functional types and soil and climate variables for explaining a substantial part of this variation. Climate, particularly temperature, and plant functional types were the two strongest predictors of fine-root trait variation. High trait variation occurred at local scales, suggesting that wide-ranging below-ground resource economics strategies are viable within most climatic areas and soil conditions.« less

Climate, soil and plant functional types as drivers of global fine-root trait variation

DOE PAGES

Freschet, Grégoire T.; Valverde-Barrantes, Oscar J.; Tucker, Caroline M.; ...

2017-03-08

Ecosystem functioning relies heavily on below-ground processes, which are largely regulated by plant fine-roots and their functional traits. However, our knowledge of fine-root trait distribution relies to date on local- and regional-scale studies with limited numbers of species, growth forms and environmental variation. We compiled a world-wide fine-root trait dataset, featuring 1115 species from contrasting climatic areas, phylogeny and growth forms to test a series of hypotheses pertaining to the influence of plant functional types, soil and climate variables, and the degree of manipulation of plant growing conditions on species fine-root trait variation. Most particularly, we tested the competing hypothesesmore » that fine-root traits typical of faster return on investment would be most strongly associated with conditions of limiting versus favourable soil resource availability. We accounted for both data source and species phylogenetic relatedness. We demonstrate that: (i) Climate conditions promoting soil fertility relate negatively to fine-root traits favouring fast soil resource acquisition, with a particularly strong positive effect of temperature on fine-root diameter and negative effect on specific root length (SRL), and a negative effect of rainfall on root nitrogen concentration; (ii) Soil bulk density strongly influences species fine-root morphology, by favouring thicker, denser fine-roots; (iii) Fine-roots from herbaceous species are on average finer and have higher SRL than those of woody species, and N 2-fixing capacity positively relates to root nitrogen; and (iv) Plants growing in pots have higher SRL than those grown in the field. Synthesis. This study reveals both the large variation in fine-root traits encountered globally and the relevance of several key plant functional types and soil and climate variables for explaining a substantial part of this variation. Climate, particularly temperature, and plant functional types were the two strongest predictors of fine-root trait variation. High trait variation occurred at local scales, suggesting that wide-ranging below-ground resource economics strategies are viable within most climatic areas and soil conditions.« less

SEASONAL CHANGES IN ROOT AND SOIL RESPIRATION OF OZONE-EXPOSED PONDEROSA PINE (PINUS PONDEROSA) GROWN IN DIFFERENT SUBSTRATES

EPA Science Inventory

Exposure to(ozone 0-3)has been shown to decrease the allocation of carbon to tree roots. Decreased allocation of carbon to roots might disrupt root metabolism and rhizosphere organisms. The effects of soil type and shoot 0, exposure on below-ground respiration and soil microbial ...

Soil temperature and precipitation affect the rooting ability of dormant hardwood cuttings of Populus

Treesearch

R.S., Jr. Zalesny; R.B. Hall; E.O. Bauer; D.E. Riemenschneider

2005-01-01

In addition to genetic control, responses to environmental stimuli affect the success of rooting. Our objectives were to: 1) assess the variation in rooting ability among 21 Populus clones grown under varying soil temperatures and amounts of precipitation and 2) identify combinations of soil temperature and precipitation that promote rooting. The...

Contributions of roots and rootstocks to sustainable, intensified crop production.

PubMed

Gregory, Peter J; Atkinson, Christopher J; Bengough, A Glyn; Else, Mark A; Fernández-Fernández, Felicidad; Harrison, Richard J; Schmidt, Sonja

2013-03-01

Sustainable intensification is seen as the main route for meeting the world's increasing demands for food and fibre. As demands mount for greater efficiency in the use of resources to achieve this goal, so the focus on roots and rootstocks and their role in acquiring water and nutrients, and overcoming pests and pathogens, is increasing. The purpose of this review is to explore some of the ways in which understanding root systems and their interactions with soils could contribute to the development of more sustainable systems of intensive production. Physical interactions with soil particles limit root growth if soils are dense, but root-soil contact is essential for optimal growth and uptake of water and nutrients. X-ray microtomography demonstrated that maize roots elongated more rapidly with increasing root-soil contact, as long as mechanical impedance was not limiting root elongation, while lupin was less sensitive to changes in root-soil contact. In addition to selecting for root architecture and rhizosphere properties, the growth of many plants in cultivated systems is profoundly affected by selection of an appropriate rootstock. Several mechanisms for scion control by rootstocks have been suggested, but the causal signals are still uncertain and may differ between crop species. Linkage map locations for quantitative trait loci for disease resistance and other traits of interest in rootstock breeding are becoming available. Designing root systems and rootstocks for specific environments is becoming a feasible target.

Natural and anthropogenic radioactivity levels and the associated radiation hazard in the soil of Oodalia Tea Estate in the hilly region of Fatickchari in Chittagong, Bangladesh

PubMed Central

Absar, Nurul; Rahman, M. Mashiur; Kamal, Masud; Siddique, Naziba; Chowdhury, Mantazul Islam

2014-01-01

Radioactivity in the soil of a tea garden in the Fatickchari area in Chittagong, Bangladesh, was measured using a high-resolution HPGe detector. The soil samples were collected from depths of up to 20 cm beneath the soil surface. The activity concentrations of naturally occurring 238U and 232Th were observed to be in the range of 27 ± 7 to 53 ± 8 Bq kg−1 and 36 ± 11 to 72 ± 11 Bq kg−1, respectively. The activity concentration of 40K ranged from 201 ± 78 to 672 ± 81 Bq kg−1, and the highest activity of fallout 137Cs observed was 10 ± 1 Bq kg−1. The average activity concentration observed for 238U was 39 ± 8 Bq kg−1, for 232Th was 57 ± 11 Bq kg−1, for 40K was 384 ± 79 Bq kg−1 and for 137Cs was 5 ± 0.5 Bq kg−1. The radiological hazard parameters (representative level index, radium equivalent activity, outdoor and indoor dose rates, outdoor and indoor annual effective dose equivalents, and radiation hazard index) were calculated from the radioactivity in the soil. PMID:25078001

Evolutionary Divergences in Root Exudate Composition among Ecologically-Contrasting Helianthus Species

PubMed Central

Bowsher, Alan W.; Ali, Rifhat; Harding, Scott A.; Tsai, Chung-Jui; Donovan, Lisa A.

2016-01-01

Plant roots exude numerous metabolites into the soil that influence nutrient availability. Although root exudate composition is hypothesized to be under selection in low fertility soils, few studies have tested this hypothesis in a phylogenetic framework. In this study, we examined root exudates of three pairs of Helianthus species chosen as phylogenetically-independent contrasts with respect to native soil nutrient availability. Under controlled environmental conditions, seedlings were grown to the three-leaf-pair stage, then transferred to either high or low nutrient treatments. After five days of nutrient treatments, we used gas chromatography-mass spectrometry for analysis of root exudates, and detected 37 metabolites across species. When compared in the high nutrient treatment, species native to low nutrient soils exhibited overall higher exudation than their sister species native to high nutrient soils in all three species pairs, providing support for repeated evolutionary shifts in response to native soil fertility. Species native to low nutrient soils and those native to high nutrient soils responded similarly to low nutrient treatments with increased exudation of organic acids (fumaric, citric, malic acids) and glucose, potentially as a mechanism to enhance nutrition acquisition. However, species native to low nutrient soils also responded to low nutrient treatments with a larger decrease in exudation of amino acids than species native to high nutrient soils in all three species pairs. This indicates that species native to low nutrient soils have evolved a unique sensitivity to changes in nutrient availability for some, but not all, root exudates. Overall, these repeated evolutionary divergences between species native to low nutrient soils and those native to high nutrient soils provide evidence for the adaptive value of root exudation, and its plasticity, in contrasting soil environments. PMID:26824236

Improvement of the soil nitrogen content and maize growth by earthworms and arbuscular mycorrhizal fungi in soils polluted by oxytetracycline.

PubMed

Cao, Jia; Wang, Chong; Ji, Dingge

2016-11-15

Interactions between earthworms (Eisenia fetida) and arbuscular mycorrhizal fungi (Rhizophagus intraradices, AM fungi) have been suggested to improve the maize nitrogen (N) content and biomass and were studied in soils polluted by oxytetracycline (OTC). Maize was planted and amended with AMF and/or earthworms (E) in the soil with low (1mgkg(-1) soil DM) or high (100mgkg(-1) soil DM) amounts of OTC pollution in comparison to soil without OTC. The root colonization, shoot and root biomass, shoot and root N contents, soil nitrogen forms, ammonia-oxidizing bacteria (AOB) and archaea (AOA) were measured at harvest. The results indicated that OTC decreased maize shoot and root biomass (p<0.05) by mediating the soil urease activity and AOB and AOA abundance, which resulted in a lower N availability for maize roots and shoots. There was a significant interaction between earthworms and AM fungi on the urease activity in soil polluted by OTC (p<0.05). Adding earthworms or AM fungi could increase the maize biomass and N content (p<0.05) in OTC polluted soil by increasing the urease activity and relieving the stress from OTC on the soil N cycle. AM fungi and earthworms interactively increased maize shoot and root biomass (p<0.05) in the OTC polluted soils through their regulation of the urease activity and the abundance of ammonia oxidizers, resulting in different soil NH4(+)-N and NO3(-)-N contents, which may contribute to the N content of maize shoots and roots. Earthworms and AM fungi could be used as an efficient method to relieve the OTC stress in agro-ecosystems. Copyright © 2016 Elsevier B.V. All rights reserved.

Soil Nitrogen Status Modifies Rice Root Response to Nematode-Bacteria Interactions in the Rhizosphere

PubMed Central

Wu, Yue; Valentine, Tracy A.; Li, Huixin

2016-01-01

It has been hypothesized that faunal activity in the rhizosphere influences root growth via an auxin-dependent pathway. In this study, two methods were used to adjust nematode and bacterial populations within experimental soils. One is “exclusion”, where soil mixed with pig manure was placed in two bags with different mesh sizes (1mm and 5μm diameter), and then surrounded by an outer layer of unamended soil resulting in soil with a greater populations of bacterial-feeding nematodes (1mm) and a control treatment (5μm). The second method is “inoculation”, whereby autoclaved soil was inoculated with bacteria (E. coli and Pseudomonas) and Nematodes (Cephalobus and C. elegans). In order to detect the changes in the rice’s perception of auxin under different nutrient and auxin conditions in the presence of soil bacterial-feeding nematodes, responses of soil chemistry (NH4+, NO3- and indole acetic acid (IAA)), rice root growth and the expression of an auxin responsive gene GH3-2 were measured. Results showed that, under low soil nutrient conditions (exclusion), low NO3- correlated with increased root branching and IAA correlated with increased root elongation and GH3-2 expression. However, under high soil nutrient conditions (inoculation), a high NH4+ to NO3- ratio promoted an increase in root surface area and there was an additional influence of NH4+ and NO3- on GH3-2 expression. Thus it was concluded that soil bacterial-feeding nematodes influenced soil nutritional status and soil IAA content, promoting root growth via an auxin dependent pathway that was offset by soil nitrogen status. PMID:26841062

Evolutionary Divergences in Root Exudate Composition among Ecologically-Contrasting Helianthus Species.

PubMed

Bowsher, Alan W; Ali, Rifhat; Harding, Scott A; Tsai, Chung-Jui; Donovan, Lisa A

2016-01-01

Plant roots exude numerous metabolites into the soil that influence nutrient availability. Although root exudate composition is hypothesized to be under selection in low fertility soils, few studies have tested this hypothesis in a phylogenetic framework. In this study, we examined root exudates of three pairs of Helianthus species chosen as phylogenetically-independent contrasts with respect to native soil nutrient availability. Under controlled environmental conditions, seedlings were grown to the three-leaf-pair stage, then transferred to either high or low nutrient treatments. After five days of nutrient treatments, we used gas chromatography-mass spectrometry for analysis of root exudates, and detected 37 metabolites across species. When compared in the high nutrient treatment, species native to low nutrient soils exhibited overall higher exudation than their sister species native to high nutrient soils in all three species pairs, providing support for repeated evolutionary shifts in response to native soil fertility. Species native to low nutrient soils and those native to high nutrient soils responded similarly to low nutrient treatments with increased exudation of organic acids (fumaric, citric, malic acids) and glucose, potentially as a mechanism to enhance nutrition acquisition. However, species native to low nutrient soils also responded to low nutrient treatments with a larger decrease in exudation of amino acids than species native to high nutrient soils in all three species pairs. This indicates that species native to low nutrient soils have evolved a unique sensitivity to changes in nutrient availability for some, but not all, root exudates. Overall, these repeated evolutionary divergences between species native to low nutrient soils and those native to high nutrient soils provide evidence for the adaptive value of root exudation, and its plasticity, in contrasting soil environments.

3D Electrical Resistivity Tomography and Mise-à-la-Masse Method as Tools for the Characterization of Vine Roots

NASA Astrophysics Data System (ADS)

Boaga, J.; Mary, B.; Peruzzo, L.; Schmutz, M.; Wu, Y.; Hubbard, S. S.; Cassiani, G.

2017-12-01

The interest on non-invasive geophysical monitoring of soil properties and root architecture is rapidly growing. Despite this, few case studies exist concerning vineyards, which are economically one of the leading sectors of agriculture. In this study, we integrate different geophysical methods in order to gain a better imaging of the vine root system, with the aim of quantifying root development, a key factor to understand roots-soil interaction and water balance. Our test site is a vineyard located in Bordeaux (France), where we adopted the Mise-a-la-Masse method (MALM) and micro-scale electrical resistivity tomography (ERT) on the same 3D electrode configuration. While ERT is a well-established technique to image changes in soil moisture content by root activity, MALM is a relatively new approach in this field of research. The idea is to inject current directly in the plant trunk and verify the resulting voltage distribution in the soil, as an effect of current distribution through the root system. In order to distinguish the root effect from other phenomena linked to the soil heterogeneities, we conducted and compared MALM measurements acquired through injecting current into the stem and into the soil near the stem. Moreover, the MALM data measured in the field were compared with numerical simulations to improve the confidence in the interpretation. Differences obtained between the stem and soil injection clearly validated the assumption that the whole root system is acting as a current pathway, thus highlighting the locations at depth where current is entering the soil from the fine roots. The simulation results indicated that the best fit is obtained through considering distributed sources with depth, reflecting a probable root zone area. The root location and volume estimated using this procedure are in agreement with vineyard experimental evidence. This work suggests the promising application of electrical methods to locate and monitor root systems. Further work is necessary to effectively integrate the geophysical and plant physiology information.

Soil suppressiveness to fusarium disease: shifts in root microbiome associated with reduction of pathogen root colonization.

PubMed

Klein, Eyal; Ofek, Maya; Katan, Jaacov; Minz, Dror; Gamliel, Abraham

2013-01-01

Soil suppressiveness to Fusarium disease was induced by incubating sandy soil with debris of wild rocket (WR; Diplotaxis tenuifolia) under field conditions. We studied microbial dynamics in the roots of cucumber seedlings following transplantation into WR-amended or nonamended soil, as influenced by inoculation with Fusarium oxysporum f. sp. radicis-cucumerinum. Disease symptoms initiated in nonamended soil 6 days after inoculation, compared with 14 days in WR-amended soil. Root infection by F. oxysporum f. sp. radicis-cucumerinum was quantified using real-time polymerase chain reaction (PCR). Target numbers were similar 3 days after inoculation for both WR-amended and nonamended soils, and were significantly lower (66%) 6 days after inoculation and transplanting into the suppressive (WR-amended) soil. This decrease in root colonization was correlated with a reduction in disease (60%) 21 days after inoculation and transplanting into the suppressive soil. Fungal community composition on cucumber roots was assessed using mass sequencing of fungal internal transcribed spacer gene fragments. Sequences related to F. oxysporum, Fusarium sp. 14005, Chaetomium sp. 15003, and an unclassified Ascomycota composed 96% of the total fungal sequences in all samples. The relative abundances of these major groups were highly affected by root inoculation with F. oxysporum f. sp. radicis-cucumerinum, with a 10-fold increase in F. oxysporum sequences, but were not affected by the WR amendment. Quantitative analysis and mass-sequencing methods indicated a qualitative shift in the root's bacterial community composition in suppressive soil, rather than a change in bacterial numbers. A sharp reduction in the size and root dominance of the Massilia population in suppressive soil was accompanied by a significant increase in the relative abundance of specific populations; namely, Rhizobium, Bacillus, Paenibacillus, and Streptomyces spp. Composition of the Streptomyces community shifted significantly, as determined by PCR denaturing gradient gel electrophoresis, resulting in an increase in the dominance of a specific population in suppressive soils after only 3 days. This shift was related mainly to the increase in Streptomyces humidus, a group previously described as antagonistic to phytopathogenic fungi. Thus, suitable soil amendment resulted in a shift in the root's bacterial communities, and infection by a virulent pathogen was contained by the root microbiome, leading to a reduced disease rate.

Developing ground penetrating radar (GPR) for enhanced root and soil organic carbon imaging: Optimizing bioenergy crop adaptation and agro-ecosystem services

NASA Astrophysics Data System (ADS)

Hays, D. B.; Delgado, A.; Bruton, R.; Dobreva, I. D.; Teare, B.; Jessup, R.; Rajan, N.; Bishop, M. P.; Lacey, R.; Neely, H.; Hons, F.; Novo, A.

2016-12-01

Selection of the ideal high biomass energy feedstock and crop cultivars for our national energy and production needs should consider not only the value of the harvested above ground feedstock, but also the local and global environmental services it provides in terms of terrestrial carbon (C) phyto-sequestration and improved soil organic matter enrichment. Selection of ideal crops cultivars is mature, while biofuel feedstock is well under way. What is lacking, however, is high throughput phenotyping (HTP) and integrated real-time data analysis technologies for selecting ideal genotypes within these crops that also confer recalcitrant high biomass or perennial root systems not only for C phyto-sequestration, but also for adaptation to conservation agro-ecosystems, increasing soil organic matter and soil water holding capacity. In no-till systems, significant studies have shown that increasing soil organic carbon is derived primarily from root and not above ground biomass. As such, efforts to increase plant soil phyto-sequestration will require a focus on developing optimal root systems within cultivated crops. We propose to achieve a significant advancement in the use of ground penetrating radar (GPR) as one approach to phenotype root biomass and 3D architecture, and to quantify soil carbon sequestration. In this context, GPR can be used for genotypic selection in breeding nurseries and unadapted germplasm with favorable root architectures, and for assessing management and nutrient practices that promote root growth. GPR has been used for over a decade to successfully map coarse woody roots. Only few have evaluated its efficacy for imaging finer fibrous roots found in grasses, or tap root species. The objectives of this project is to: i) Empirically define the optimal ground penetrating radar (GPR)-antenna array for 3D root and soil organic carbon imaging and quantification in high biomass grass systems; and ii) Develop novel 3- and 4-dimensional data analysis methodologies for using GPR for non-invasive crop root and soil C phyto-sequestration 3-D imaging and quantification within a spatially variable soil matrix. Current results and future directions will be presented and discussed.

Roots and the stability of forested slopes

Treesearch

R. R. Ziemer

1981-01-01

Abstract - Root decay after timber cutting can lead to slope failure. In situ measurements of soil with tree roots showed that soil strength increased linearly as root biomass increased. Forests clear-felled 3 years earlier contained about one-third of the root biomass of old-growth forests. Nearly all of the roots

Chemometrics-enhanced high performance liquid chromatography-diode array detection strategy for simultaneous determination of eight co-eluted compounds in ten kinds of Chinese teas using second-order calibration method based on alternating trilinear decomposition algorithm.

PubMed

Yin, Xiao-Li; Wu, Hai-Long; Gu, Hui-Wen; Zhang, Xiao-Hua; Sun, Yan-Mei; Hu, Yong; Liu, Lu; Rong, Qi-Ming; Yu, Ru-Qin

2014-10-17

In this work, an attractive chemometrics-enhanced high performance liquid chromatography-diode array detection (HPLC-DAD) strategy was proposed for simultaneous and fast determination of eight co-eluted compounds including gallic acid, caffeine and six catechins in ten kinds of Chinese teas by using second-order calibration method based on alternating trilinear decomposition (ATLD) algorithm. This new strategy proved to be a useful tool for handling the co-eluted peaks, uncalibrated interferences and baseline drifts existing in the process of chromatographic separation, which benefited from the "second-order advantages", making the determination of gallic acid, caffeine and six catechins in tea infusions within 8 min under a simple mobile phase condition. The average recoveries of the analytes on two selected tea samples ranged from 91.7 to 103.1% with standard deviations (SD) ranged from 1.9 to 11.9%. Figures of merit including sensitivity (SEN), selectivity (SEL), root-mean-square error of prediction (RMSEP) and limit of detection (LOD) have been calculated to validate the accuracy of the proposed method. To further confirm the reliability of the method, a multiple reaction monitoring (MRM) method based on LC-MS/MS was employed for comparison and the obtained results of both methods were consistent with each other. Furthermore, as a universal strategy, this new proposed analytical method was applied for the determination of gallic acid, caffeine and catechins in several other kinds of Chinese teas, including different levels and varieties. Finally, based on the quantitative results, principal component analysis (PCA) was used to conduct a cluster analysis for these Chinese teas. The green tea, Oolong tea and Pu-erh raw tea samples were classified successfully. All results demonstrated that the proposed method is accurate, sensitive, fast, universal and ideal for the rapid, routine analysis and discrimination of gallic acid, caffeine and catechins in Chinese tea samples. Copyright © 2014 Elsevier B.V. All rights reserved.

Leaf and root C-to-N ratios are poor predictors of soil microbial biomass C and respiration across 32 tree species.

PubMed

Ferlian, Olga; Wirth, Christian; Eisenhauer, Nico

2017-11-01

Soil microorganisms are the main primary decomposers of plant material and drive biogeochemical processes like carbon and nitrogen cycles. Hence, knowledge of their nutritional demands and limitations for activity and growth is of particular importance. However, potential effects of the stoichiometry of soil and plant species on soil microbial activity and carbon use efficiency are poorly understood. Soil properties and plant traits are assumed to drive microbial carbon and community structure. We investigated the associations between C and N concentrations of leaf, root, and soil as well as their ratios and soil microbial biomass C and activity (microbial basal respiration and specific respiratory quotient) across 32 young native angiosperm tree species at two locations in Central Germany. Correlations between C:N ratios of leaves, roots, and soil were positive but overall weak. Only regressions between root and leaf C:N ratios as well as between root and soil C:N ratios were significant at one site. Soil microbial properties differed significantly between the two sites and were significantly correlated with soil C:N ratio across sites. Soil C concentrations rather than N concentrations drove significant effects of soil C:N ratio on soil microbial properties. No significant correlations between soil microbial properties and leaf as well as root C:N ratios were found. We found weak correlations of C:N ratios between plant aboveground and belowground tissues. Furthermore, microorganisms were not affected by the stoichiometry of plant tissues in the investigated young trees. The results suggest that soil stoichiometry represents a consistent determinant of soil microbial biomass and respiration. Our study indicates that stoichiometric relationships among tree organs can be weak and poor predictors of soil microbial properties in young tree stands. Further research in controlled experimental settings with a wide range of tree species is needed to study the role of plant chemical traits like the composition and stoichiometry of root exudates in determining interactions between above- and belowground compartments.

Tolerance to high soil temperature in foxtail millet (Setaria italica L.) is related to shoot and root growth and metabolism.

PubMed

Aidoo, Moses Kwame; Bdolach, Eyal; Fait, Aaron; Lazarovitch, Naftali; Rachmilevitch, Shimon

2016-09-01

Roots play important roles in regulating whole-plant carbon and water relations in response to extreme soil temperature. Three foxtail millet (Setaria italica L.) lines (448-Ames 21521, 463-P1391643 and 523-P1219619) were subjected to two different soil temperatures (28 and 38 °C). The gas exchange, chlorophyll fluorescence, root morphology and central metabolism of leaves and roots were studied at the grain-filling stage. High soil temperature (38 °C) significantly influenced the shoot transpiration, stomatal conductance, photosynthesis, root growth and metabolism of all lines. The root length and area were significantly reduced in lines 448 and 463 in response to the stress, while only a small non-specific reduction was observed in line 523 in response to the treatment. The shift of root metabolites in response to high soil temperature was also genotype specific. In response to high soil temperature, glutamate, proline and pyroglutamate were reduced in line 448, and alanine, aspartate, glycine, pyroglutamate, serine, threonine and valine were accumulated in line 463. In the roots of line 523, serine, threonine, valine, isomaltose, maltose, raffinose, malate and itaconate were accumulated. Root tolerance to high soil temperature was evident in line 523, in its roots growth potential, lower photosynthesis and stomatal conductance rates, and effective utilization and assimilation of membrane carbon and nitrogen, coupled with the accumulation of protective metabolites. Copyright © 2016. Published by Elsevier Masson SAS.

Functional Characterization of Proanthocyanidin Pathway Enzymes from Tea and Their Application for Metabolic Engineering1[W][OA

PubMed Central

Pang, Yongzhen; Abeysinghe, I. Sarath B.; He, Ji; He, Xianzhi; Huhman, David; Mewan, K. Mudith; Sumner, Lloyd W.; Yun, Jianfei; Dixon, Richard A.

2013-01-01

Tea (Camellia sinensis) is rich in specialized metabolites, especially polyphenolic proanthocyanidins (PAs) and their precursors. To better understand the PA pathway in tea, we generated a complementary DNA library from leaf tissue of the blister blight-resistant tea cultivar TRI2043 and functionally characterized key enzymes responsible for the biosynthesis of PA precursors. Structural genes encoding enzymes involved in the general phenylpropanoid/flavonoid pathway and the PA-specific branch pathway were well represented in the library. Recombinant tea leucoanthocyanidin reductase (CsLAR) expressed in Escherichia coli was active with leucocyanidin as substrate to produce the 2R,3S-trans-flavan-ol (+)-catechin in vitro. Two genes encoding anthocyanidin reductase, CsANR1 and CsANR2, were also expressed in E. coli, and the recombinant proteins exhibited similar kinetic properties. Both converted cyanidin to a mixture of (+)-epicatechin and (−)-catechin, although in different proportions, indicating that both enzymes possess epimerase activity. These epimers were unexpected based on the belief that tea PAs are made from (−)-epicatechin and (+)-catechin. Ectopic expression of CsANR2 or CsLAR led to the accumulation of low levels of PA precursors and their conjugates in Medicago truncatula hairy roots and anthocyanin-overproducing tobacco (Nicotiana tabacum), but levels of oligomeric PAs were very low. Surprisingly, the expression of CsLAR in tobacco overproducing anthocyanin led to the accumulation of higher levels of epicatechin and its glucoside than of catechin, again highlighting the potential importance of epimerization in flavan-3-ol biosynthesis. These data provide a resource for understanding tea PA biosynthesis and tools for the bioengineering of flavanols. PMID:23288883

Root Water Uptake and Soil Moisture Pattern Dynamics - Capturing Connections, Controls and Causalities

NASA Astrophysics Data System (ADS)

Blume, T.; Heidbuechel, I.; Hassler, S. K.; Simard, S.; Guntner, A.; Stewart, R. D.; Weiler, M.

2015-12-01

We hypothesize that there is a shift in controls on landscape scale soil moisture patterns when plants become active during the growing season. Especially during the summer soil moisture patterns are not only controlled by soils, topography and related abiotic site characteristics but also by root water uptake. Root water uptake influences soil moisture patterns both in the lateral and vertical direction. Plant water uptake from different soil depths is estimated based on diurnal fluctuations in soil moisture content and was investigated with a unique setup of 46 field sites in Luxemburg and 15 field sites in Germany. These sites cover a range of geologies, soils, topographic positions and types of vegetation. Vegetation types include pasture, pine forest (young and old) and different deciduous forest stands. Available data at all sites includes information at high temporal resolution from 3-5 soil moisture and soil temperature profiles, matrix potential, piezometers and sapflow sensors as well as standard climate data. At sites with access to a stream, discharge or water level is also recorded. The analysis of soil moisture patterns over time indicates a shift in regime depending on season. Depth profiles of root water uptake show strong differences between different forest stands, with maximum depths ranging between 50 and 200 cm. Temporal dynamics of signal strength within the profile furthermore suggest a locally shifting spatial distribution of root water uptake depending on water availability. We will investigate temporal thresholds (under which conditions spatial patterns of root water uptake become most distinct) as well as landscape controls on soil moisture and root water uptake dynamics.

Crop systems and plant roots can modify the soil water holding capacity

NASA Astrophysics Data System (ADS)

Doussan, Claude; Cousin, Isabelle; Berard, Annette; Chabbi, Abad; Legendre, Laurent; Czarnes, Sonia; Toussaint, Bruce; Ruy, Stéphane

2015-04-01

At the interface between atmosphere and deep sub-soil, the root zone plays a major role in regulating the flow of water between major compartments: groundwater / surface / atmosphere (drainage, runoff, evapotranspiration). This role of soil as regulator/control of water fluxes, but also as a supporting medium to plant growth, is strongly dependent on the hydric properties of the soil. In turn, the plant roots growing in the soil can change its structure; both in the plow layer and in the deeper horizons and, therefore, could change the soil properties, particularly hydric properties. Such root-related alteration of soil properties can be linked to direct effect of roots such as soil perforation during growth, aggregation of soil particles or indirect effects such as the release of exudates by roots that could modify the properties of water or of soil particles. On an another hand, the rhizosphere, the zone around roots influenced by the activity of root and associated microorganisms, could have a high influence on hydric properties, particularly the water retention. To test if crops and plant roots rhizosphere may have a significant effect on water retention, we conducted various experiment from laboratory to field scales. In the lab, we tested different soil and species for rhizospheric effect on soil water retention. Variation in available water content (AWC) between bulk and rhizospheric soil varied from non-significant to a significant increase (to about 16% increase) depending on plant species and soil type. In the field, the alteration of water retention by root systems was tested in different pedological settings for a Maize crop inoculated or not with the bacteria Azospirillum spp., known to alter root structure, growth and morphology. Again, a range of variation in AWC was evidenced, with significant increase (~30%) in some soil types, but more linked to innoculated/non-innoculated plants rather than to a difference between rhizospheric and bulk soil. Finally, in field condition, on a larger time scale, we investigated the effect of crop alternations on the Lusignan ACBB SOERE site. That site presents on the same soil type different crop alternation treatments: an old, continuous grassland, a 8-year continuous cereal rotation and an alternation of cereal/grassland (3-years cereals and 3 to 6 years grassland). Measurements of AWC in these different crop systems setting, 8 years after implementation of the SOERE, show that AWC was different in the cereal/grassland alternation compared to the continuous cereal or grassland cropping systems (~15-20% increase). If such alteration of AWC may seem modest, modeling (in the case of ACBB SOERE) shows that this increase in AWC would increase the cereal yield but also decrease the water drainage out of the root zone, and the possible associated loss of nitrate and pesticides. As a conclusion, in line with some other literature data, roots can influence soil hydric properties and this opens a way to use plants as "soil engineers" to modulate the properties of the root zone, and thus the components of water balance, to mitigate effects of drought on crops… However, how and how much plants will modify the hydric properties, a question which mixes physics, biology, microbiology, crop system settings, is still in infancy and needs further research.

The mechanics and energetics of soil bioturbation by earthworms and plant roots - Impacts on soil structure generation and maintenance

NASA Astrophysics Data System (ADS)

Or, Dani; Ruiz, Siul; Schymanski, Stanlislaus

2015-04-01

Soil structure is the delicate arrangement of solids and voids that facilitate numerous hydrological and ecological soil functions ranging from water infiltration and retention to gaseous exchange and mechanical anchoring of plant roots. Many anthropogenic activities affect soil structure, e.g. via tillage and compaction, and by promotion or suppression of biological activity and soil carbon pools. Soil biological activity is critical to the generation and maintenance of favorable soil structure, primarily through bioturbation by earthworms and root proliferation. The study aims to quantify the mechanisms, rates, and energetics associated with soil bioturbation, using a new biomechanical model to estimate stresses required to penetrate and expand a cylindrical cavity in a soil under different hydration and mechanical conditions. The stresses and soil displacement involved are placed in their ecological context (typical sizes, population densities, burrowing rates and behavior) enabling estimation of mechanical energy requirements and impacts on soil organic carbon pool (in the case of earthworms). We consider steady state plastic cavity expansion to determine burrowing pressures of earthworms and plant roots, akin to models of cone penetration representing initial burrowing into soil volumes. Results show that with increasing water content the strain energy decreases and suggest trade-offs between cavity expansion pressures and energy investment for different root and earthworm geometries and soil hydration. The study provides a quantitative framework for estimating energy costs of bioturbation in terms of soil organic carbon or the mechanical costs of soil exploration by plant roots as well as mechanical and hydration limits to such activities.

Disentangling who is who during rhizosphere acidification in root interactions: combining fluorescence with optode techniques

PubMed Central

Faget, Marc; Blossfeld, Stephan; von Gillhaussen, Philipp; Schurr, Ulrich; Temperton, Vicky M.

2013-01-01

Plant–soil interactions can strongly influence root growth in plants. There is now increasing evidence that root–root interactions can also influence root growth, affecting architecture and root traits such as lateral root formation. Both when species grow alone or in interaction with others, root systems are in turn affected by as well as affect rhizosphere pH. Changes in soil pH have knock-on effects on nutrient availability. A limitation until recently has been the inability to assign species identity to different roots in soil. Combining the planar optode technique with fluorescent plants enables us to distinguish between plant species grown in natural soil and in parallel study pH dynamics in a non-invasive way at the same region of interest (ROI). We measured pH in the rhizosphere of maize and bean in rhizotrons in a climate chamber, with ROIs on roots in proximity to the roots of the other species as well as not-close to the other species. We found clear dynamic changes of pH over time and differences between the two species in rhizosphere acidification. Interestingly, when roots of the two species were interacting, the degree of acidification or alkalization compared to bulk soil was less strong then when roots were not growing in the vicinity of the other species. This cutting-edge approach can help provide a better understanding of plant–plant and plant–soil interactions. PMID:24137168

Mesquite root distribution and water use efficiency in response to long-term soil moisture manipulations

Treesearch

R. J. Ansley; T. W. Boutton; P. W. Jacoby

2007-01-01

This study quantified honey mesquite (Prosopis glandulosa) root growth and water use efficiency following chronic soil drought or wetness on a clay loam site in north Texas. Root systems of mature trees were containerized with barriers inserted into the soil. Soil moisture within containers was manipulated with irrigation (Irrigated) or rain...

Adaptive root foraging strategies along a boreal-temperate forest gradient.

PubMed

Ostonen, Ivika; Truu, Marika; Helmisaari, Heljä-Sisko; Lukac, Martin; Borken, Werner; Vanguelova, Elena; Godbold, Douglas L; Lõhmus, Krista; Zang, Ulrich; Tedersoo, Leho; Preem, Jens-Konrad; Rosenvald, Katrin; Aosaar, Jürgen; Armolaitis, Kęstutis; Frey, Jane; Kabral, Naima; Kukumägi, Mai; Leppälammi-Kujansuu, Jaana; Lindroos, Antti-Jussi; Merilä, Päivi; Napa, Ülle; Nöjd, Pekka; Parts, Kaarin; Uri, Veiko; Varik, Mats; Truu, Jaak

2017-08-01

The tree root-mycorhizosphere plays a key role in resource uptake, but also in the adaptation of forests to changing environments. The adaptive foraging mechanisms of ectomycorrhizal (EcM) and fine roots of Picea abies, Pinus sylvestris and Betula pendula were evaluated along a gradient from temperate to subarctic boreal forest (38 sites between latitudes 48°N and 69°N) in Europe. Variables describing tree resource uptake structures and processes (absorptive fine root biomass and morphology, nitrogen (N) concentration in absorptive roots, extramatrical mycelium (EMM) biomass, community structure of root-associated EcM fungi, soil and rhizosphere bacteria) were used to analyse relationships between root system functional traits and climate, soil and stand characteristics. Absorptive fine root biomass per stand basal area increased significantly from temperate to boreal forests, coinciding with longer and thinner root tips with higher tissue density, smaller EMM biomass per root length and a shift in soil microbial community structure. The soil carbon (C) : N ratio was found to explain most of the variability in absorptive fine root and EMM biomass, root tissue density, N concentration and rhizosphere bacterial community structure. We suggest a concept of absorptive fine root foraging strategies involving both qualitative and quantitative changes in the root-mycorrhiza-bacteria continuum along climate and soil C : N gradients. © 2017 The Authors. New Phytologist © 2017 New Phytologist Trust.

[Effect of grafting on rhizosphere soil environment and its relationship with disease resistance and yield of pepper.

PubMed

Duan, Xi; Bi, Huan Gai; Wei, You Ying; Li, Ting; Wang, Hong Tao; Ai, Xi Zhen

2016-11-18

We investigated the effect of grafting on the root rhizosphere soil microorganisms, physical properties, nutrient content, soil-borne disease and yield of pepper, using 'Weishi' (WS) and 'Buyeding' (BYD) as rootstocks, the cultivar pepper 'Xinfeng 2' (XF) as scion, and the own-root (XF/XF) pepper as the control. The results indicated that XF/WS and XF/BYD significantly increased the populations of fungi and actinomycetes and the percentage of actinomycetes. 60 days after transplanting, the activities of catalase (CAT) and peroxidase (POD) were much higher in root rhizosphere soil of grafted pepper. 90 days after transplanting, the activities of phosphatase, invertase, urease, and nitrate reductase (NR) were much higher in root rhizosphere soil of XF/WS. In addition, The XF/WS and XF/BYD also highly increased hydrocarbon compounds in soil extraction, slightly increased electric conductivity (EC) but lowered nitrogen, phosphorus and potassium contents in root rhizosphere soil. Higher pH in root rhizosphere soil was found in XF/WS but not in XF/BYD. These data indicated that grafting could optimize the rhizosphere soil environment of pepper and enhance the resistance of soil-borne diseases. The yields of XF/WS and XF/BYD were increased by 40.8% and 28.7%, respectively.

Plant roots: understanding structure and function in an ocean of complexity

PubMed Central

Ryan, Peter R.; Delhaize, Emmanuel; Watt, Michelle; Richardson, Alan E.

2016-01-01

Background The structure and function of plant roots and their interactions with soil are exciting scientific frontiers that will ultimately reveal much about our natural systems, global water and mineral and carbon cycles, and help secure food supplies into the future. This Special Issue presents a collection of papers that address topics at the forefront of our understanding of root biology. Scope These papers investigate how roots cope with drought, nutrient deficiencies, toxicities and soil compaction as well as the interactions that roots have with soil microorganisms. Roots of model plant species, annual crops and perennial species are studied in short-term experiments through to multi-year trials. Spatial scales range from the gene up to farming systems and nutrient cycling. The diverse, integrated approaches described by these studies encompass root genetics as applied to soil management, as well as documenting the signalling processes occurring between roots and shoots and between roots and soil. Conclusions This Special Issue on roots presents invited reviews and research papers covering a span of topics ranging from fundamental aspects of anatomy, growth and water uptake to roots in crop and pasture systems. Understanding root structure and function and adaptation to the abiotic and biotic stresses encountered in field conditions is important for sustainable agricultural production and better management of natural systems.

Comparison of Rooting Strategies to Explore Rock Fractures for Shallow Soil-Adapted Tree Species with Contrasting Aboveground Growth Rates: A Greenhouse Microcosm Experiment

PubMed Central

Nie, Yunpeng; Chen, Hongsong; Ding, Yali; Yang, Jing; Wang, Kelin

2017-01-01

For tree species adapted to shallow soil environments, rooting strategies that efficiently explore rock fractures are important because soil water depletion occurs frequently. However, two questions: (a) to what extent shallow soil-adapted species rely on exploring rock fractures and (b) what outcomes result from drought stress, have rarely been tested. Therefore, based on the expectation that early development of roots into deep soil layers is at the cost of aboveground growth, seedlings of three tree species (Cyclobalanopsis glauca, Delavaya toxocarpa, and Acer cinnamomifolium) with distinct aboveground growth rates were selected from a typical shallow soil region. In a greenhouse experiment that mimics the basic features of shallow soil environments, 1-year-old seedlings were transplanted into simulated microcosms of shallow soil overlaying fractured bedrock. Root biomass allocation and leaf physiological activities, as well as leaf δ13C values were investigated and compared for two treatments: regular irrigation and repeated cycles of drought stress. Our results show that the three species differed in their rooting strategies in the context of encountering rock fractures, however, these strategies were not closely related to the aboveground growth rate. For the slowest-growing seedling, C. glauca, percentages of root mass in the fractures, as well as in the soil layer between soil and bedrock increased significantly under both treatments, indicating a specialized rooting strategy that facilitated the exploration of rock fractures. Early investment in deep root growth was likely critical to the establishment of this drought-vulnerable species. For the intermediate-growing, A. cinnamomifolium, percentages of root mass in the bedrock and interface soil layers were relatively low and exhibited no obvious change under either treatment. This limited need to explore rock fractures was compensated by a conservative water use strategy. For the fast-growing, D. toxocarpa, percentages of root mass in the bedrock and interface layers increased simultaneously under drought conditions, but not under irrigated conditions. This drought-induced rooting plasticity was associated with drought avoidance by this species. Although, root development might have been affected by the simulated microcosm, contrasting results among the three species indicated that efficient use of rock fractures is not a necessary or specialized strategy of shallow-soil adapted species. The establishment and persistence of these species relied on the mutual complementation between their species-specific rooting strategies and drought adaptations. PMID:29018464

Exploitation of nutrient- and C-rich paleosols by deep rooting plants in Dutch drift- and coversands

NASA Astrophysics Data System (ADS)

Gocke, Martina; Kessler, Fabian; van Mourik, Jan; Jansen, Boris; Wiesenberg, Guido L. B.

2015-04-01

Plant roots are commonly assumed to be most abundant in topsoil, with strongly decreasing frequencies in underlying soil horizons with incrasing depth and almost absence of roots below the uppermost few dm due to unfavorable environmental conditions in terms of e.g. aeration, nutrient availability or water, that hamper root growth. It still remains unknown, to which extent roots might be able to exploit deeper parts of soils and underlying soil parent material as well as burried paleosols. The study site is located in SE Netherlands. Undisturbed oak forests developed about 200 years ago on stabilized driftsand, deposited on a plaggic Anthrosol after approximately 700 years of agricultural use. The soil profile, consisting of the recent initial Podzol in driftsand, overlying 1.1 m thick plaggic deposits that were established in a 0.5 m thick residual Podzol in coversand, was excavated in a pit of 2.3 m depth. Living and dead roots were counted throughout the profile on both, the vertical wall and horizontal levels. Additionally, soil or sediment samples free of visible root remains were collected in depth intervals between 0.05 m and 0.15 m from topsoil down to the coversand. A multi-proxy approach, including assessment of bulk elemental composition of soil, sediments and paleosol and molecular structure of organic matter therein, organic carbon contents, bulk density and pH was applied in order to comprehensively describe the varying environmental conditions within the soil profile and in transects from roots to root-free material. The burried agricultural soil revealed low density and high organic carbon contents compared to the coversand parent material, and especially in its lower part, high phosphorous contents. In contrast, the burried Podzol was characterized by completely different geochemical and physical properties, like increasing pH with depth and high iron and aluminium contents. In the recent initial Podzol, fine roots (≤ 2 mm), deriving from both oak trees and understory vegetation, immediately decreased from 476 m-2 to 24 m-2, whereas medium roots (2-5 mm) from oak trees continuously increased from 8 m-2 at the surface to 188 m-2 within the upper part of the agricultural soil. Both, frequencies of fine and medium roots peaked at 4.448 m-2 and 216 m-2, respectively, in the uppermost part of the burried Podzol, thus considerably exceeding topsoil abundances. Comparison of these results with those obtained at the profile wall demonstrated that fine root abundances might be considerably underestimated by the more traditional approach of profile wall investigation, because fine roots were growing vertically to exploit the nutrient-rich burried paleosols. Unlike fine roots, medium roots and even more, large roots (> 5 mm) were not able to penetrate the hard sesquioxide crusts of the burried Podzol in larger numbers. Our results show that roots are able to deeply penetrate the soil and underlying soil parent material or paleosols, if the latter provides nutrition benefits. Root distribution strongly depends on physical and chemical properties of the deep subsoil, which should be taken into account when interpreting complex soil profiles covering recent and paleosols.

Determination of chlorimuron and metsulfuron residues in two soils of Argentina using a rapid seed-bioassay.

PubMed

Castro, M C; Bedmar, F; Monterubbianesi, M G; Peretti, A; Barassi, C A

2002-10-01

The presence of chlorimuron ethyl and metsulfuron methyl in two soils was determined by a modified petri dish bioassay. Pregerminated seeds of maize and sunflower were placed in petri dishes containing 85 to 100 g of treated soil. Radicle root lengths were measured after 24 h. Chlorimuron had no effect on maize on the Balcarce soil, however 0.007 microg g(-1) decreased sunflower root length. Chlorimuron decreased maize and sunflower root length regardless application dose on the San Cayetano soil. Metsulfuron decreased maize root length at 0.04 microg g(-1) and sunflower at 0.021 microg g(-1) on the Balcarce soil. On the San Cayetano soil metsulfuron at 0.001 microg g(-1) decreased maize and sunflower root length. The phytotoxicity of chlorimuron and metsulfuron changed according to soil type and dose. Maize and sunflower were 1.3-1.5 and 1.3-1.8 times respectively more sensitive to chlorimuron on the San Cayetano soil than on the Balcarce soil. In the case of metsulfuron, maize was similarly sensitive on both soils but sunflower was 1.7-2.0 times more sensitive on the San Cayetano soil than on the Balcarce soil. Phytotoxicity increased as organic matter (OM) content decreased and/or when the soil pH and concentration increased.

Stomatal control in tomato with ABA-deficient roots: response of grafted plants to soil drying.

PubMed

Holbrook, N Michele; Shashidhar, V R; James, Richard A; Munns, Rana

2002-06-01

The hypothesis that ABA produced by roots in drying soil is responsible for stomatal closure was tested with grafted plants constructed from the ABA-deficient tomato mutants, sitiens and flacca and their near-isogenic wild-type parent. Three types of experiments were conducted. In the first type, reciprocal grafts were made between the wild type and sitiens or flacca. Stomatal conductance accorded with the genotype of the shoot, not the root. Stomates closed in all of the grafted plants in response to soil drying, regardless of the root genotype, i.e. regardless of the ability of the roots to produce ABA. In the second type of experiment, wild-type shoots were grafted onto a split-root system consisting of one wild-type root grafted to one mutant (flacca or sitiens) root. Water was withheld from one root system, while the other was watered well so that the shoots did not experience any decline in water potential or loss of turgor. Stomates closed to a similar extent when water was withheld from the mutant roots or the wild-type roots. In the third type of experiment, grafted plants with wild-type shoots and either wild-type or sitiens roots were established in pots that could be placed inside a pressure chamber, and the pressure increased as the soil dried so that the shoots remained fully turgid throughout. Stomates closed as the soil dried, regardless of whether the roots were wild type or sitiens. These experiments demonstrate that stomatal closure in response to soil drying can occur in the absence of leaf water deficit, and does not require ABA production by roots. A chemical signal from roots leading to a change in apoplastic ABA levels in leaves may be responsible for the stomatal closure.

Highly resolved imaging at the soil - plant root interface: A combination of fluorescence imaging and neutron radiography

NASA Astrophysics Data System (ADS)

Rudolph, N.; Oswald, S. E.; Lehmann, E.

2012-12-01

This study represents a novel experimental set up to non-invasivley map the gradients of biogeochemical parameters at the soil -root interface of plants in situ. The patterns of oxygen, pH and the soil water content distribution were mapped in high resolution with a combination of fluorescence imaging and neutron radiography. Measuring the real-time distribution of water, pH and oxygen concentration would enable us to locate the active parts of the roots in respect to water uptake, exudation and respiration. Roots performance itself is variable as a function of age and development stage and is interrelated with local soil conditions such as water and oxygen availability or nutrients and pH buffering capacity in soil. Non-destructive imaging methods such as fluorescence and neutron imaging have provided a unique opportunity to unravel some of these complex processes. Thin glass containers (inner size 10cm x 10cm x 1.5 cm) were filled with 2 different sandy soils. Sensor foil for O2 and pH were installed on the inner-sides of the containers. We grew lupine plants in the container under controlled conditions until the root system was developed. Growing plants at different stages prior to the imaging experiment, we took neutron radiographs and fluorescence images of 10-day old and 30-day old root systems of lupine plants over a range of soil water contents, and therefore a range of root activities and oxygen changes. We observed the oxygen consumption pattern, the pH changes, and the root water uptake of lupine plants over the course of several days. We observed a higher respiration activity around the lateral roots than for the tap root. The oxygen depletion zones around the roots extended to farther distances after each rewatering of the samples. Root systems of the plants were mapped from the neutron radiograps. Close association of the roots distribution and the the location of oxygen depletion patterns provided evidence that this effect was caused by roots. The oxygen deficit pattern intensified with increasing root age. Due to the high soil water content after rewatering, the aeration from atmosphere was limited. pH dynamic was closely related to the root age. Initially, the soil pH strongly decreased around the young growing tap root. This pattern changed with time to an increased pH around the tap root but a strong acidification in the vicinity of lateral roots. After each rewatering, the pH increased which might be due to the dilution of H+ in high soil water contents. With our coupled imaging set up we were able to monitor the dynamics of oxygen, pH and water content around the roots of plant with high spatial and temporal resolutions over day and night at a wide range of soil water contents. Our experimental set up provides the opportunity to simultaneousely map the dynamics of these vital parameters in the root zone of plants.

Soil water availability and rooting depth as determinants of hydraulic architecture of Patagonian woody species

Treesearch

Sandra J. Bucci; Fabian G. Scholz; Guillermo Goldstein; Frederick C. Meinzer; Maria E. Arce

2009-01-01

We studied the water economy of nine woody species differing in rooting depth in a Patagonian shrub steppe from southern Argentina to understand how soil water availability and rooting depth determine their hydraulic architecture. Soil water content and potentials, leaf water potentials (Leaf) hydraulic conductivity, wood density (Pw), rooting depth, and specific leaf...

Mapping soil carbon from cradle to grave: drafting a molecular blueprint for C transformation from roots to stabilized soil organic C

DOE Office of Scientific and Technical Information (OSTI.GOV)

Firestone, Mary

The soil surrounding plant roots, the rhizosphere, has long been recognized as a zone of great functional importance to plants and the terrestrial ecosystems they inhabit. The primary objective of this research project was to determine how organic carbon (C) decomposition and stabilization processes in soil are impacted by the interactions between plant roots and the soil microbial community. The project addressed three hypotheses: H1: The microbiomes of the rhizosphere and detritosphere undergo a functional succession driven by the molecular composition and quantity of root-derived C. H2: Elevated CO 2 impacts the function and succession of rhizosphere communities thus alteringmore » the fate of root-derived C. H3: Microbial metabolism of root derived C is a critical controller of the accumulation of organic C in the mineral-associated soil pool. Researchers combined stable isotope approaches with metagenomic analyses in order to map the flow of C from roots to specific organisms within the rhizosphere. These analyses allowed us to assess the metabolic capabilities and functional profiles of the organisms using root carbon.« less

Light Sheet Tomography (LST) for in situ imaging of plant roots.

PubMed

Yang, Zhengyi; Downie, Helen; Rozbicki, Emil; Dupuy, Lionel X; MacDonald, Michael P

2013-07-15

The production of crops capable of efficient nutrient use is essential for addressing the problem of global food security. The ability of a plant's root system to interact with the soil micro-environment determines how effectively it can extract water and nutrients. In order to assess this ability and develop the fast and cost effective phenotyping techniques which are needed to establish efficient root systems, in situ imaging in soil is required. To date this has not been possible due to the high density of scatterers and absorbers in soil or because other growth substrates do not sufficiently model the heterogeneity of a soil's microenvironment. We present here a new form of light sheet imaging with novel transparent soil containing refractive index matched particles. This imaging method does not rely on fluorescence, but relies solely on scattering from root material. We term this form of imaging Light Sheet Tomography (LST). We have tested LST on a range of materials and plant roots in transparent soil and gel. Due to the low density of root structures, i.e. relatively large spaces between adjacent roots, long-term monitoring of lettuce root development in situ with subsequent quantitative analysis was achieved.

Distribution of root exudates and mucilage in the rhizosphere: combining 14C imaging with neutron radiography

NASA Astrophysics Data System (ADS)

Holz, Maire; Carminati, Andrea; Kuzyakov, Yakov

2015-04-01

Water and nutrients will be the major factors limiting food production in future. Plant roots employ various mechanisms to increase the access to limited soil resources. Low molecular weight organic substances released by roots into the rhizosphere increase nutrient availability by interactions with microorganisms, while mucilage improves water availability under low moisture conditions. Though composition and quality of these substances have intensively been investigated, studies on the spatial distribution and quantification of exudates in soil are scarce. Our aim was to quantify and visualize root exudates and mucilage distribution around growing roots using neutron radiography and 14C imaging depending on drought stress. Plants were grown in rhizotrons well suited for neutron radiography and 14C imaging. Plants were exposed to various soil water contents experiencing different levels of drought stress. The water content in the rhizosphere was imaged during several drying/wetting cycles by neutron radiography. The radiographs taken a few hours after irrigation showed a wet region around the root tips showing the allocation and distribution of mucilage. The increased water content in the rhizosphere of the young root segments was related to mucilage concentrations by parameterization described in Kroener et al. (2014). In parallel 14C imaging of root after 14CO2 labeling of shoots (Pausch and Kuzyakov 2011) showed distribution of rhizodeposits including mucilage. Three days after setting the water content, plants were labeled in 14CO2 atmosphere. Two days later 14C distribution in soil was imaged by placing a phosphor-imaging plate on the rhizobox. To quantify rhizodeposition, 14C activity on the image was related to the absolute 14C activity in the soil and root after destructive sampling. By comparing the amounts of mucilage (neutron radiography) with the amount of total root derived C (14C imaging), we were able to differentiate between mucilage and root exudates. We found that mucilage and 14C concentrations were higher around the young root segments. Mucilage concentration was particularly high in the most apical 3-5 cm of the roots. Drought stress increased 14C exudation relative to C fixation and led to higher mucilage concentrations around roots. However, it remains unclear, whether the lower mucilage concentration around roots grown at higher soil moisture was caused by the faster diffusion of mucilage in wet soils. Therefore, a second experiment was focused on diffusion of mucilage in soil at varying water contents. The diffusion of mucilage in soil was not very sensitive to soil water content. We conclude that mucilage release was higher for plants exposed to drought stress. In summary, the combination of neutron radiography and 14C imaging can successfully be used to visualize and to quantify the distribution of mucilage and root exudates in the rhizosphere of plants grown in soil. References Kroener, E., Zarebanadkouki, M., Kaestner, A., & Carmintati, A. (2014). Nonequilibrium water dynamics in the rhizosphere: How mucilage affects water flow in soils. Water Resources Research, 37. Pausch, J., & Kuzyakov, Y. (2011). Photoassimilate allocation and dynamics of hotspots in roots visualized by 14C phosphor imaging. Journal of Plant Nutrition and Soil Science, 174(1), 12-19.

Utility and Value of Satellite-Based Frost Forecasting for Kenya's Tea Farming Sector

NASA Astrophysics Data System (ADS)

Morrison, I.

2016-12-01

Frost damage regularly inflicts millions of dollars of crop losses in the tea-growing highlands of western Kenya, a problem that the USAID/NASA Regional Visualization and Monitoring System (SERVIR) program is working to mitigate through a frost monitoring and forecasting product that uses satellite-based temperature and soil moisture data to generate up to three days of advanced warning before frost events. This paper presents the findings of a value of information (VOI) study assessing the value of this product based on Kenyan tea farmers' experiences with frost and frost-damage mitigation. Value was calculated based on historic trends of frost frequency, severity, and extent; likelihood of warning receipt and response; and subsequent frost-related crop-loss aversion. Quantification of these factors was derived through inferential analysis of survey data from 400 tea-farming households across the tea-growing regions of Kericho and Nandi, supplemented with key informant interviews with decision-makers at large estate tea plantations, historical frost incident and crop-loss data from estate tea plantations and agricultural insurance companies, and publicly available demographic and economic data. At this time, the product provides a forecasting window of up to three days, and no other frost-prediction methods are used by the large or small-scale farmers of Kenya's tea sector. This represents a significant opportunity for preemptive loss-reduction via Earth observation data. However, the tea-growing community has only two realistic options for frost-damage mitigation: preemptive harvest of available tea leaves to minimize losses, or skiving (light pruning) to facilitate fast recovery from frost damage. Both options are labor-intensive and require a minimum of three days of warning to be viable. As a result, the frost forecasting system has a very narrow margin of usefulness, making its value highly dependent on rapid access to the warning messages and flexible access to harvesting labor for mitigation activities. These findings show that the Frost monitoring product has the potential for real monetary benefit to members of the frost-vulnerable tea growing community but realization of that value needs direct collaboration with the tea-farming community to ensure effective product utilization.

Predicting bioavailability of PAHs in soils to wheat roots with triolein-embedded cellulose acetate membranes and comparison with chemical extraction.

PubMed

Tao, Yuqiang; Zhang, Shuzhen; Wang, Zijian; Christie, Peter

2008-11-26

Triolein-embedded cellulose acetate membrane (TECAM) was buried in 15 field-contaminated soils in parallel with the cultivation of wheat to predict bioavailability of naphthalene, phenanthrene, pyrene, and benzo[a]pyrene to wheat roots, and the method was compared with chemical extraction methods. Although a good linear relationship was found between PAH concentrations in chemical extractants and wheat roots, the percentage of PAH in soil removed by chemical extraction was much higher than the corresponding percentage removed by wheat roots. In contrast to chemical extraction, a nearly 1:1 relationship was found between the amount of each PAH taken up by TECAMs and wheat roots (r(2) = 0.798-0.925, P < 0.01). Furthermore, the uptake of PAHs by TECAMs and wheat roots had the same pathway of passive transport via the soil solution. Moreover, TECAM caused minimal disturbance to the soil and was easy to deploy. Therefore, TECAM is believed to be a useful tool to predict bioavailability of PAHs to wheat roots grown in contaminated soils.

What can we learn from in-soil imaging of a live plant: X-ray Computed Tomography and 3D numerical simulation of root-soil system

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yang, Xiaofan; Varga, Tamas; Liu, Chongxuan

Plant roots play a critical role in plant-soil-microbe interactions that occur in the rhizosphere, as well as processes with important implications to farming, forest management and climate change. X-ray computed tomography (XCT) has been proven to be an effective tool for non-invasive root imaging and analysis. A combination of XCT, open-source software, and our own code was used to noninvasively image a prairie dropseed (Sporobolus heterolepis) specimen, segment the root data to obtain a 3D image of the root structure at 31µm resolution, and extract quantitative information (root volume and surface area) from the 3D data, respectively. Based on themore » mesh generated from the root structure, computational fluid dynamics (CFD) simulations were applied to numerically investigate the root-soil-groundwater system. The plant root conductivity, soil hydraulic conductivity and transpiration rate were shown to control the groundwater distribution. The flow variability and soil water distributions under different scenarios were investigated. Parameterizations were evaluated to show their impacts on the average conductivity. The pore-scale modeling approach provides realistic simulations of rhizosphere flow processes and provides useful information that can be linked to upscaled models.« less

Production of the Antibiotic Phenazine-1-Carboxylic Acid by Fluorescent Pseudomonas Species in the Rhizosphere of Wheat

PubMed Central

Thomashow, Linda S.; Weller, David M.; Bonsall, Robert F.; Pierson, Leland S.

1990-01-01

Pseudomonas fluorescens 2-79 and P. aureofaciens 30-84 produce the antibiotic phenazine-1-carboxylic acid and suppress take-all, an important root disease of wheat caused by Gaeumannomyces graminis var. tritici. To determine whether the antibiotic is produced in situ, wheat seeds were treated with strain 2-79 or 30-84 or with phenazine-nonproducing mutants or were left untreated and then were sown in natural or steamed soil in the field or growth chamber. The antibiotic was isolated only from roots of wheat colonized by strain 2-79 or 30-84 in both growth chamber and field studies. No antibiotic was recovered from the roots of seedlings grown from seeds treated with phenazine-nonproducing mutants or left untreated. In natural soils, comparable amounts of antibiotic (27 to 43 ng/g of root with adhering soil) were recovered from roots colonized by strain 2-79 whether or not the pathogen was present. Roots of plants grown in steamed soil yielded larger bacterial populations and more antibiotic than roots from natural soils. In steamed and natural soils, roots from which the antibiotic was recovered had significantly less disease than roots with no antibiotic, indicating that suppression of take-all is related directly to the presence of the antibiotic in the rhizosphere. PMID:16348176

CuO Nanoparticle Dissolution and Toxicity to Wheat ( Triticum aestivum) in Rhizosphere Soil.

PubMed

Gao, Xiaoyu; Avellan, Astrid; Laughton, Stephanie; Vaidya, Rucha; Rodrigues, Sónia M; Casman, Elizabeth A; Lowry, Gregory V

2018-03-06

It has been suggested, but not previously measured, that dissolution kinetics of soluble nanoparticles such as CuO nanoparticles (NPs) in soil affect their phytotoxicity. An added complexity is that such dissolution is also affected by the presence of plant roots. Here, we measured the rate of dissolution of CuO NPs in bulk soil, and in soil in which wheat plants ( Triticum aestivum) were grown under two soil NP dosing conditions: (a) freshly added CuO NPs (500 mg Cu/kg soil) and (b) CuO NPs aged for 28 d before planting. At the end of the plant growth period (14 d), available Cu was measured in three different soil compartments: bulk (not associated with roots), loosely attached to roots, and rhizosphere (soil firmly attached to roots). The labile Cu fraction increased from 17 mg/kg to 223 mg/kg in fresh treatments and from 283 mg/kg to 305 mg/kg in aged treatments over the growth period due to dissolution. Aging CuO NPs increased the toxicity to Triticum aestivum (reduction in root maximal length). The presence of roots in the soil had opposite and somewhat compensatory effects on NP dissolution, as measured in rhizosphere soil. pH increased 0.4 pH units for fresh NP treatments and 0.6 pH units for aged NPs. This lowered CuO NP dissolution in rhizosphere soil. Exudates from T. aestivum roots also increased soluble Cu in pore water. CaCl 2 extractable Cu concentrations increaed in rhizosphere soil compared to bulk soil, from 1.8 mg/kg to 6.2 mg/kg in fresh treatment and from 3.4 mg/kg to 5.4 mg/kg in aged treatments. Our study correlated CuO NP dissolution and the resulting Cu ion exposure profile to phytotoxicity, and showed that plant-induced changes in rhizosphere conditions should be considered when measuring the dissolution of CuO NPs near roots.

Effects of spatiotemporal variation of soil salinity on fine root distribution in different plant configuration modes in new reclamation coastal saline field.

PubMed

Jiang, Hong; Du, Hongyu; Bai, Yingying; Hu, Yue; Rao, Yingfu; Chen, Chong; Cai, Yongli

2016-04-01

In order to study the effects of salinity on plant fine roots, we considered three different plant configuration modes (tree stand model (TSM), shrub stand model (SSM), and tree-shrub stand model (TSSM)). Soil samples were collected with the method of soil drilling. Significant differences of electrical conductivity (EC) in the soil depth of 0-60 cm were observed among the three modes (p < 0.05). In the above three modes, the variation of soil salinity among various soil layers and monthly variation of soil salinity were the highest in SSM and reached 2.30 and 2.23 mS/cm (EC1:5), respectively. Due to the effect of salinity, fine root biomass (FRB) showed significant differences in different soil depths (p < 0.05). More than 60% of FRB was concentrated in the soil depth above 30 cm. FRB showed exponential decline with soil depth (p < 0.05). FRB showed spatial heterogeneity in the 40-cm soil depth. In the above three modes, compared with FRB, specific root length (SRL) and fine root length density (FRLD) showed the similar changing trend. Fine roots showed significant seasonal differences among different modes (p < 0.05). FRB showed the bimodal variation and was the highest in July. However, we found that the high content of salts had obvious inhibitory effect on the distribution of FRB. Therefore, the salinity should be below 1.5 mS/cm, which was suitable for the growth of plant roots. Among the three modes, TSSM had the highest FRB, SRL, and FRLD and no obvious soil salt accumulation was observed. The results indicated that fine root biomass was affected by high salt and that TSSM had the strong effects of salt suppression and control. In our study, TSSM may be the optimal configuration mode for salt suppression and control in saline soil.

Trait-based characterisation of soil exploitation strategies of banana, weeds and cover plant species

PubMed Central

Tardy, Florence; Damour, Gaëlle; Dorel, Marc; Moreau, Delphine

2017-01-01

Cover plants can be introduced in cropping systems to provide agroecosystem services, including weed control via competition for resources. There is currently no consensus on how to identify the best cover plant species, while trait-based approaches are promising for screening plant species due to their agroecosystem service provision potential. This study was carried out to characterize soil exploitation strategies of cover plant species in banana agroecosystems using a trait-based approach, and in turn identify cover plant species with a high weed control potential via competition for soil resources in banana cropping systems. A field experiment was conducted on 17 cover plant species, two weed species and two banana cultivars grown individually. Four functional traits were measured. Two of them (i.e., the size of the zone explored by roots and the root impact density) were used to characterize root system soil exploration patterns. Two other traits (i.e., specific root length and root diameter) were used to characterize resource acquisition within the soil zone explored by the roots. All studied traits exhibited marked variations among species. The findings suggested a trade-off between the abilities of species to develop a limited number of large diameter roots exploring a large soil zone versus many thin roots exploring a smaller soil zone. Three soil-resource exploitation strategies were identified among species: (i) with large diameter roots that explore a large soil zone; (ii) with small diameter roots and a high specific length that explore a smaller soil zone; and (iii) with a high total root-impact density and an intermediate specific root length that explore the uppermost soil layers. Interestingly, in our panel of species, no correlations with regard to belowground and aboveground strategies were noted: species with an acquisitive belowground strategy could display an acquisitive or a conservative aboveground strategy. The findings of this study illustrated that a trait-based approach could be used to identify plant species with potential for competing with weeds, while minimising competition with banana. Six of the 17 studied cover crop species were identified as having this potential. The next step will be to assess them for their weed control performances in banana cropping systems with low reliance on herbicides. PMID:28257454

Trait-based characterisation of soil exploitation strategies of banana, weeds and cover plant species.

PubMed

Tardy, Florence; Damour, Gaëlle; Dorel, Marc; Moreau, Delphine

2017-01-01

Cover plants can be introduced in cropping systems to provide agroecosystem services, including weed control via competition for resources. There is currently no consensus on how to identify the best cover plant species, while trait-based approaches are promising for screening plant species due to their agroecosystem service provision potential. This study was carried out to characterize soil exploitation strategies of cover plant species in banana agroecosystems using a trait-based approach, and in turn identify cover plant species with a high weed control potential via competition for soil resources in banana cropping systems. A field experiment was conducted on 17 cover plant species, two weed species and two banana cultivars grown individually. Four functional traits were measured. Two of them (i.e., the size of the zone explored by roots and the root impact density) were used to characterize root system soil exploration patterns. Two other traits (i.e., specific root length and root diameter) were used to characterize resource acquisition within the soil zone explored by the roots. All studied traits exhibited marked variations among species. The findings suggested a trade-off between the abilities of species to develop a limited number of large diameter roots exploring a large soil zone versus many thin roots exploring a smaller soil zone. Three soil-resource exploitation strategies were identified among species: (i) with large diameter roots that explore a large soil zone; (ii) with small diameter roots and a high specific length that explore a smaller soil zone; and (iii) with a high total root-impact density and an intermediate specific root length that explore the uppermost soil layers. Interestingly, in our panel of species, no correlations with regard to belowground and aboveground strategies were noted: species with an acquisitive belowground strategy could display an acquisitive or a conservative aboveground strategy. The findings of this study illustrated that a trait-based approach could be used to identify plant species with potential for competing with weeds, while minimising competition with banana. Six of the 17 studied cover crop species were identified as having this potential. The next step will be to assess them for their weed control performances in banana cropping systems with low reliance on herbicides.

A split-root technique for measuring root water potential.

PubMed

Adeoye, K B; Rawlins, S L

1981-07-01

Water encounters various resistances in moving along a path of decreasing potential energy from the soil through the plant to the atmosphere. The reported relative magnitudes of these pathway resistances vary widely and often these results are conflicting. One reason for such inconsistency is the difficulty in measuring the potential drop across various segments of the soil-plant-atmosphere continuum. The measurement of water potentials at the soil-root interface and in the root xylem of a transpiring plant remains a challenging problem.In the divided root experiment reported here, the measured water potential of an enclosed, nonabsorbing branch of the root system of young corn (Bonanza) plants to infer the water potential of the remaining roots growing in soil was used. The selected root branch of the seedling was grown in a specially constructed Teflon test tube into which a screen-enclosed thermocouple psychrometer was inserted and sealed to monitor the root's water potential. The root and its surrounding atmosphere were assumed to be in vapor equilibrium.

A Split-Root Technique for Measuring Root Water Potential

PubMed Central

Adeoye, Kingsley B.; Rawlins, Stephen L.

1981-01-01

Water encounters various resistances in moving along a path of decreasing potential energy from the soil through the plant to the atmosphere. The reported relative magnitudes of these pathway resistances vary widely and often these results are conflicting. One reason for such inconsistency is the difficulty in measuring the potential drop across various segments of the soil-plant-atmosphere continuum. The measurement of water potentials at the soil-root interface and in the root xylem of a transpiring plant remains a challenging problem. In the divided root experiment reported here, the measured water potential of an enclosed, nonabsorbing branch of the root system of young corn (Bonanza) plants to infer the water potential of the remaining roots growing in soil was used. The selected root branch of the seedling was grown in a specially constructed Teflon test tube into which a screen-enclosed thermocouple psychrometer was inserted and sealed to monitor the root's water potential. The root and its surrounding atmosphere were assumed to be in vapor equilibrium. Images PMID:16661886

Effect of organic matter and roots in soil respiration in a Mediterranean riparian areas in Central Spain

NASA Astrophysics Data System (ADS)

Gonzalez-Garrido, Laura; Delgado, Juan Antonio; Martinez, Teodora

2010-05-01

Soil respiration is one of the largest carbon flux components within terrestrial ecosystems, and small changes in the magnitude of soil respiration could have a large effect on the concentration of CO2 in the atmosphere. The main objective is evaluating the factors controlling soil respiration on the global carbon cycle in riparian areas of Henares River. We evaluated total soil respiration as it was affected by soil temperature, soil moisture, root respiration and organic matter in four areas differing in vegetation cover. We specifically assessed the contribution of soil organic matter and fine root biomass (≤1 mm.) in soil carbon dioxide flux. The study area is located on the riverbanks of Henares River where it passes through the municipal term of Alcala de Henares (Madrid) in Central Spain. Measurements were performed in spring and autumn of 2009. The study was conducted on four different types of riparian vegetation: natural Mediterranean riparian forest, reforestation of 1994, reforestation of 1999 and riparian grassland without trees. In each area of study 3, 25x25 m, plots were delimited and within each plot three sampling units of 50x50 cm were selected at random. The temperature of the ground was taken during the measures from respiration using a Multi-thermometer (-50°C - +300°C) at 5 cm depth. The moisture content of the ground was measured at 5 cm of depth with a HH2 Moisture meter (Delta Devices, Cambridge, UK). The measures of respiration of the ground were realised in field by means of LCI portable (LC pro ADC Bioscientific, Ltd. UK) connected to a ground respiration camera. We introduced the camera 3 cm into the soil just after eliminating the vegetation grass of the surface of measurement cutting carefully the aerial part, without damaging the roots. Soil CO2 flux measurements were registered after stabilization. Immediately after CO2 measurements, we obtained soil samples by means of a drill of 2.18 cm of diameter taking samples to 10 cm and 20 cm depth. Soil samples were dried to the air with the aim of preserving the roots the sample contained. They were extracted manually by means of very fine tweezers. We separate roots by diameter (Fine roots ≤ 1mm; rest of roots > 1mm) and dead from alive using texture and colour as clues. Finally the dry weight of roots was taking with a precision balance +-0.0001. Soil organic matter to 10 and 20 cm of depth were measure in laboratory using the method of Walkley and Black (1934). Differences in Soil CO2 flux, organic matter, fine root biomass, temperature and moisture between areas were analyzed using one-way ANOVAs. Our results suggest that fine root biomass present a larger impact than soil organic matter in soil CO2 flux values. Natural riparian forest presented higher values of soil CO2 flux than the rest of areas even when differences in root biomass and soil organic matter were controlled. Between the grassy area and both reforestations there were no differences in soil CO2 flux. In addition, we found that soil CO2 flux in our study area was more affected by soil temperature than by moisture, which could be relevant in the interpretation of the possible effects of global change. Key words: riparian forest, fine roots, carbon cycle, soil CO2 flux, root respiration. Acknowledgements: Research projects, n°FP08-AG02 IMIDRA and RTA 2006-00101-00-00 INIA and predoctoral scholarship FPI-INIA.

Plant stimulation of soil microbial community succession: how sequential expression mediates soil carbon stabilization and turnover

DOE Office of Scientific and Technical Information (OSTI.GOV)

Firestone, Mary

2015-03-31

It is now understood that most plant C is utilized or transformed by soil microorganisms en route to stabilization. Hence the composition of microbial communities that mediate decomposition and transformation of root C is critical, as are the metabolic capabilities of these communities. The change in composition and function of the C-transforming microbial communities over time in effect defines the biological component of soil C stabilization. Our research was designed to test 2 general hypotheses; the first two hypotheses are discussed first; H1: Root-exudate interactions with soil microbial populations results in the expression of enzymatic capacities for macromolecular, complex carbonmore » decomposition; and H2: Microbial communities surrounding roots undergo taxonomic succession linked to functional gene activities as roots grow, mature, and decompose in soil. Over the term of the project we made significant progress in 1) quantifying the temporal pattern of root interactions with the soil decomposing community and 2) characterizing the role of root exudates in mediating these interactions.« less

Quantifying root water extraction after drought recovery using sub-mm in situ empirical data

DOE Office of Scientific and Technical Information (OSTI.GOV)

Dhiman, Indu; Bilheux, Hassina Z.; DeCarlo, Keito F.

Root-specific responses to stress are not well-known, and have been largely based on indirect measurements of bulk soil water extraction, which limits mechanistic modeling of root function. Here, we used neutron radiography to examine in situ root-soil water dynamics of a previously droughted black cottonwood ( Populus trichocarpa) seedling, contrasting water uptake by younger, thinner or older, thicker parts of the fine root system. The smaller diameter roots had greater water uptake capacity per unit surface area than the larger diameter roots, but they had less total surface area leading to less total water extraction; rates ranged from 0.0027 –more » 0.0116 g cm -2 hr -1. The finest most-active roots were not visible in the radiographs, indicating the need to include destructive sampling. Analysis based on bulk soil hydraulic properties indicated substantial redistribution of water via saturated/unsaturated flow, capillary wicking, and root hydraulic redistribution across the layers - suggesting water uptake dynamics following an infiltration event may be more complex than approximated by common soil hydraulic or root surface area modeling approaches. Lastly, our results highlight the need for continued exploration of root-trait specific water uptake rates in situ, and impacts of roots on soil hydraulic properties – both critical components for mechanistic modeling of root function.« less

Quantifying root water extraction after drought recovery using sub-mm in situ empirical data

DOE PAGES

Dhiman, Indu; Bilheux, Hassina Z.; DeCarlo, Keito F.; ...

2017-09-09

Root-specific responses to stress are not well-known, and have been largely based on indirect measurements of bulk soil water extraction, which limits mechanistic modeling of root function. Here, we used neutron radiography to examine in situ root-soil water dynamics of a previously droughted black cottonwood ( Populus trichocarpa) seedling, contrasting water uptake by younger, thinner or older, thicker parts of the fine root system. The smaller diameter roots had greater water uptake capacity per unit surface area than the larger diameter roots, but they had less total surface area leading to less total water extraction; rates ranged from 0.0027 –more » 0.0116 g cm -2 hr -1. The finest most-active roots were not visible in the radiographs, indicating the need to include destructive sampling. Analysis based on bulk soil hydraulic properties indicated substantial redistribution of water via saturated/unsaturated flow, capillary wicking, and root hydraulic redistribution across the layers - suggesting water uptake dynamics following an infiltration event may be more complex than approximated by common soil hydraulic or root surface area modeling approaches. Lastly, our results highlight the need for continued exploration of root-trait specific water uptake rates in situ, and impacts of roots on soil hydraulic properties – both critical components for mechanistic modeling of root function.« less

Plant Water Uptake in Drying Soils1

PubMed Central

Lobet, Guillaume; Couvreur, Valentin; Meunier, Félicien; Javaux, Mathieu; Draye, Xavier

2014-01-01

Over the last decade, investigations on root water uptake have evolved toward a deeper integration of the soil and roots compartment properties, with the goal of improving our understanding of water acquisition from drying soils. This evolution parallels the increasing attention of agronomists to suboptimal crop production environments. Recent results have led to the description of root system architectures that might contribute to deep-water extraction or to water-saving strategies. In addition, the manipulation of root hydraulic properties would provide further opportunities to improve water uptake. However, modeling studies highlight the role of soil hydraulics in the control of water uptake in drying soil and call for integrative soil-plant system approaches. PMID:24515834

Feedbacks between soil penetration resistance, root architecture and water uptake limit water accessibility and crop growth - A vicious circle.

PubMed

Colombi, Tino; Torres, Lorena Chagas; Walter, Achim; Keller, Thomas

2018-06-01

Water is the most limiting resource for global crop production. The projected increase of dry spells due to climate change will further increase the problem of water limited crop yields. Besides low water abundance and availability, water limitations also occur due to restricted water accessibility. Soil penetration resistance, which is largely influenced by soil moisture, is the major soil property regulating root elongation and water accessibility. Until now the interactions between soil penetration resistance, root system properties, water uptake and crop productivity are rarely investigated. In the current study we quantified how interactive effects between soil penetration resistance, root architecture and water uptake affect water accessibility and crop productivity in the field. Maize was grown on compacted and uncompacted soil that was either tilled or remained untilled after compaction, which resulted in four treatments with different topsoil penetration resistance. Higher topsoil penetration resistance caused root systems to be shallower. This resulted in increased water uptake from the topsoil and hence topsoil drying, which further increased the penetration resistance in the uppermost soil layer. As a consequence of this feedback, root growth into deeper soil layers, where water would have been available, was reduced and plant growth decreased. Our results demonstrate that soil penetration resistance, root architecture and water uptake are closely interrelated and thereby determine the potential of plants to access soil water pools. Hence, these interactions and their feedbacks on water accessibility and crop productivity have to be accounted for when developing strategies to alleviate water limitations in cropping systems. Copyright © 2018 Elsevier B.V. All rights reserved.

Prediction of Moisture Content for Congou Black Tea Withering Leaves Using Image Features and Nonlinear Method.

PubMed

Liang, Gaozhen; Dong, Chunwang; Hu, Bin; Zhu, Hongkai; Yuan, Haibo; Jiang, Yongwen; Hao, Guoshuang

2018-05-18

Withering is the first step in the processing of congou black tea. With respect to the deficiency of traditional water content detection methods, a machine vision based NDT (Non Destructive Testing) method was established to detect the moisture content of withered leaves. First, according to the time sequences using computer visual system collected visible light images of tea leaf surfaces, and color and texture characteristics are extracted through the spatial changes of colors. Then quantitative prediction models for moisture content detection of withered tea leaves was established through linear PLS (Partial Least Squares) and non-linear SVM (Support Vector Machine). The results showed correlation coefficients higher than 0.8 between the water contents and green component mean value (G), lightness component mean value (L * ) and uniformity (U), which means that the extracted characteristics have great potential to predict the water contents. The performance parameters as correlation coefficient of prediction set (Rp), root-mean-square error of prediction (RMSEP), and relative standard deviation (RPD) of the SVM prediction model are 0.9314, 0.0411 and 1.8004, respectively. The non-linear modeling method can better describe the quantitative analytical relations between the image and water content. With superior generalization and robustness, the method would provide a new train of thought and theoretical basis for the online water content monitoring technology of automated production of black tea.

Nitrogen fluxes at the root-soil interface show a mismatch of nitrogen fertilizer supply and sugarcane root uptake capacity

NASA Astrophysics Data System (ADS)

Inselsbacher, Erich; Schmidt, Susanne; Näsholm, Torgny; Robinson, Nicole; Guillou, Stéphane; Vinall, Kerry; Lakshmanan, Prakash; Brackin, Richard

2016-04-01

Nitrogen (N) uptake by agricultural crops is a key constituent of the global N cycle, as N captured by roots has a markedly different fate than N remaining in the soil. Global evidence indicates that only approximately 50% of applied N fertilizer is captured by crops, and the remainder can cause pollution via runoff and gaseous emissions. This inefficiency is of global concern, and requires innovation based on improved understanding of which N forms are available for and ultimately taken up by crops. However, current soil analysis methods based on destructive soil sampling provide little insight into delivery and acquisition of N forms by roots. Here, we present the results of a study in sugarcane fields receiving different fertilizer regimes comparing soil N supply rates with potential root N uptake rates. We applied microdialysis, a novel technique for in situ quantification of soil nutrient fluxes, to measure flux rates of inorganic N and amino acid N, and analyzed N uptake capacities of sugarcane roots using 15N labelled tracers. We found that in fertilized sugarcane soils, fluxes of inorganic N exceed the uptake capacities of sugarcane roots by several orders of magnitude. Contrary, fluxes of organic N closely matched roots' uptake capacity. These results indicate root uptake capacity constrains plant acquisition of inorganic N. This mismatch between soil N supply and root N uptake capacity is a likely key driver for low N efficiency in the studied crop system. Our results also suggest that the relative contribution of inorganic N for plant nutrition may be overestimated when relying on soil extracts as indicators for root-available N, and organic N may contribute more to crop N supply than is currently assumed. Overall, we show a new approach for examining in situ N relations in soil in context of crop N physiology, which provides a new avenue towards tailoring N fertilizer supply to match the specific uptake abilities and N demand of crops over the growth cycle.

Neural Network-Based Retrieval of Surface and Root Zone Soil Moisture using Multi-Frequency Remotely-Sensed Observations

NASA Astrophysics Data System (ADS)

Hamed Alemohammad, Seyed; Kolassa, Jana; Prigent, Catherine; Aires, Filipe; Gentine, Pierre

2017-04-01

Knowledge of root zone soil moisture is essential in studying plant's response to different stress conditions since plant photosynthetic activity and transpiration rate are constrained by the water available through their roots. Current global root zone soil moisture estimates are based on either outputs from physical models constrained by observations, or assimilation of remotely-sensed microwave-based surface soil moisture estimates with physical model outputs. However, quality of these estimates are limited by the accuracy of the model representations of physical processes (such as radiative transfer, infiltration, percolation, and evapotranspiration) as well as errors in the estimates of the surface parameters. Additionally, statistical approaches provide an alternative efficient platform to develop root zone soil moisture retrieval algorithms from remotely-sensed observations. In this study, we present a new neural network based retrieval algorithm to estimate surface and root zone soil moisture from passive microwave observations of SMAP satellite (L-band) and AMSR2 instrument (X-band). SMAP early morning observations are ideal for surface soil moisture retrieval. AMSR2 mid-night observations are used here as an indicator of plant hydraulic properties that are related to root zone soil moisture. The combined observations from SMAP and AMSR2 together with other ancillary observations including the Solar-Induced Fluorescence (SIF) estimates from GOME-2 instrument provide necessary information to estimate surface and root zone soil moisture. The algorithm is applied to observations from the first 18 months of SMAP mission and retrievals are validated against in-situ observations and other global datasets.

Quantifying root-reinforcement of river bank soils by four Australian tree species

NASA Astrophysics Data System (ADS)

Docker, B. B.; Hubble, T. C. T.

2008-08-01

The increased shear resistance of soil due to root-reinforcement by four common Australian riparian trees, Casuarina glauca, Eucalyptus amplifolia, Eucalyptus elata and Acacia floribunda, was determined in-situ with a field shear-box. Root pull-out strengths and root tensile-strengths were also measured and used to evaluate the utility of the root-reinforcement estimation models that assume simultaneous failure of all roots at the shear plane. Field shear-box results indicate that tree roots fail progressively rather than simultaneously. Shear-strengths calculated for root-reinforced soil assuming simultaneous root failure, yielded values between 50% and 215% higher than directly measured shear-strengths. The magnitude of the overestimate varies among species and probably results from differences in both the geometry of the root-system and tensile strengths of the root material. Soil blocks under A. floribunda which presents many, well-spread, highly-branched fine roots with relatively higher tensile strength, conformed most closely with root model estimates; whereas E. amplifolia, which presents a few, large, unbranched vertical roots, concentrated directly beneath the tree stem and of relatively low tensile strength, deviated furthest from model-estimated shear-strengths. These results suggest that considerable caution be exercised when applying estimates of increased shear-strength due to root-reinforcement in riverbank stability modelling. Nevertheless, increased soil shear strength provided by tree roots can be calculated by knowledge of the Root Area Ratio ( RAR) at the shear plane. At equivalent RAR values, A. floribunda demonstrated the greatest earth reinforcement potential of the four species studied.

Response of the Fine Root Production, Phenology, and Turnover Rate of Six Shrub Species from a Subtropical Forest to a Soil Moisture Gradient and Shading

NASA Astrophysics Data System (ADS)

Fu, X.; Dai, X.; Wang, H.

2015-12-01

Knowledge of the fine root dynamics of different life forms in forest ecosystems is critical to understanding how the overall belowground carbon cycling is affected by climate change. However, our current knowledge regarding how endogenous or exogenous factors regulate the root dynamics of understory vegetation is limited. We selected a suite of study sites representing different habitats with gradients of soil moisture and solar radiation (shading or no shading). We assessed the fine root production phenology, the total fine root production, and the turnover among six understory shrub species in a subtropical climate, and examined the responses of the fine root dynamics to gradients in the soil moisture and solar radiation. The shrubs included three evergreen species, Loropetalum chinense, Vaccinium bracteatum, and Adinandra millettii, and three deciduous species, Serissa serissoides, Rubus corchorifolius, and Lespedeza davidii. We observed that variations in the annual fine root production and turnover among species were significant in the deciduous group but not in the evergreen group. Notably, V. bracteatum and S. serissoides presented the greatest responses in terms of root phenology to gradients in the soil moisture and shading: high-moisture habitat led to a decrease and shade led to an increase in fine root production during spring. Species with smaller fine roots of the 1st+2nd-order diameter presented more sensitive responses in terms of fine root phenology to a soil moisture gradient. Species with a higher fine root nitrogen-to -carbon ratio exhibited more sensitive responses in terms of fine root annual production to shading. Soil moisture and shading did not change the annual fine root production as much as the turnover rate. The fine root dynamics of some understory shrubs varied significantly with soil moisture and solar radiation status and may be different from tree species. Our results emphasize the need to study the understory fine root dynamics in the achievement of a complete understanding of the overall belowground carbon cycling in a forest ecosystem, particularly ecosystems in which the understory fine root highly contributes to the belowground biomass.

Visualizing Rhizosphere Soil Structure Around Living Roots

NASA Astrophysics Data System (ADS)

Menon, M.; Berli, M.; Ghezzehei, T. A.; Nico, P.; Young, M. H.; Tyler, S. W.

2008-12-01

The rhizosphere, a thin layer of soil (0 to 2 mm) surrounding a living root, is an important interface between bulk soil and plant root and plays a critical role in root water and nutrient uptake. In this study, we used X-ray Computerized Microtomography (microCT) to visualize soil structure around living roots non-destructively and with high spatial resolution. Four different plant species (Helianthus annuus, Lupinus hartwegii, Vigna radiata and Phaseolus lunatus), grown in four different porous materials (glass beads, medium and coarse sand, loam aggregates), were scanned with 10 ìm spatial resolution, using the microtomography beamline 8.3.2 at the Advanced Light Source, Lawrence Berkeley National Laboratory, Berkeley, CA. Sample cross section images clearly show contacts between roots and soil particles, connecting water films, air-water interfaces as well as some cellular features of the plants taproots. We found with a simulation experiment, inflating a cylindrical micro-balloon in a pack of air-dry loam aggregates, that soil fracturing rather than compaction might occur around a taproot growing in dry soil. Form these preliminary experiments, we concluded that microCT has potential as a tool for a more process-based understanding of the role of rhizosphere soil structure on soil fertility, plant growth and the water balance at the earth-atmosphere interface.

Impact of axial root growth angles on nitrogen acquisition in maize depends on environmental conditions.

PubMed

Dathe, A; Postma, J A; Postma-Blaauw, M B; Lynch, J P

2016-09-01

Crops with reduced requirement for nitrogen (N) fertilizer would have substantial benefits in developed nations, while improving food security in developing nations. This study employs the functional structural plant model SimRoot to test the hypothesis that variation in the growth angles of axial roots of maize (Zea mays L.) is an important determinant of N capture. Six phenotypes contrasting in axial root growth angles were modelled for 42 d at seven soil nitrate levels from 10 to 250 kg ha(-1) in a sand and a silt loam, and five precipitation regimes ranging from 0·5× to 1·5× of an ambient rainfall pattern. Model results were compared with soil N measurements of field sites with silt loam and loamy sand textures. For optimal nitrate uptake, root foraging must coincide with nitrate availability in the soil profile, which depends on soil type and precipitation regime. The benefit of specific root architectures for efficient N uptake increases with decreasing soil N content, while the effect of soil type increases with increasing soil N level. Extreme root architectures are beneficial under extreme environmental conditions. Extremely shallow root systems perform well under reduced precipitation, but perform poorly with ambient and greater precipitation. Dimorphic phenotypes with normal or shallow seminal and very steep nodal roots performed well in all scenarios, and consistently outperformed the steep phenotypes. Nitrate uptake increased under reduced leaching conditions in the silt loam and with low precipitation. Results support the hypothesis that root growth angles are primary determinants of N acquisition in maize. With decreasing soil N status, optimal angles resulted in 15-50 % greater N acquisition over 42 d. Optimal root phenotypes for N capture varied with soil and precipitation regimes, suggesting that genetic selection for root phenotypes could be tailored to specific environments. © The Author 2016. Published by Oxford University Press on behalf of the Annals of Botany Company. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Rhizosphere size

NASA Astrophysics Data System (ADS)

Kuzyakov, Yakov; Razavi, Bahar

2017-04-01

Estimation of the soil volume affected by roots - the rhizosphere - is crucial to assess the effects of plants on properties and processes in soils and dynamics of nutrients, water, microorganisms and soil organic matter. The challenges to assess the rhizosphere size are: 1) the continuum of properties between the root surface and root-free soil, 2) differences in the distributions of various properties (carbon, microorganisms and their activities, various nutrients, enzymes, etc.) along and across the roots, 3) temporal changes of properties and processes. Thus, to describe the rhizosphere size and root effects, a holistic approach is necessary. We collected literature and own data on the rhizosphere gradients of a broad range of physico-chemical and biological properties: pH, CO2, oxygen, redox potential, water uptake, various nutrients (C, N, P, K, Ca, Mg, Mn and Fe), organic compounds (glucose, carboxylic acids, amino acids), activities of enzymes of C, N, P and S cycles. The collected data were obtained based on the destructive approaches (thin layer slicing), rhizotron studies and in situ visualization techniques: optodes, zymography, sensitive gels, 14C and neutron imaging. The root effects were pronounced from less than 0.5 mm (nutrients with slow diffusion) up to more than 50 mm (for gases). However, the most common effects were between 1 - 10 mm. Sharp gradients (e.g. for P, carboxylic acids, enzyme activities) allowed to calculate clear rhizosphere boundaries and so, the soil volume affected by roots. The first analyses were done to assess the effects of soil texture and moisture as well as root system and age on these gradients. The most properties can be described by two curve types: exponential saturation and S curve, each with increasing and decreasing concentration profiles from the root surface. The gradient based distribution functions were calculated and used to extrapolate on the whole soil depending on the root density and rooting intensity. We conclude that despite the specific effects of plants and soil on the rhizosphere size, the most common distribution functions can be calculated for individual roots and extrapolated for the whole soil profile.

Roots Stimulate Expression of Decomposition Transcripts in the Soil Microbiome

NASA Astrophysics Data System (ADS)

Nuccio, E. E.; Karaoz, U.; Zhou, J.; Brodie, E.; Firestone, M.; Pett-Ridge, J.

2016-12-01

The soil surrounding plant roots, the rhizosphere, has long been recognized as a zone of great functional importance in terrestrial ecosystems. Rhizosphere microorganisms can affect the breakdown of plant tissues and root litter, and can accelerate the decomposition of detrital plant biomass, which is a process commonly described as "priming." However, the molecular mechanisms underlying rhizosphere C cycling are poorly understood, and the carbohydrate and lignolytic gene transcripts mediating the decomposition of root litter in soil are largely unidentified. We hypothesized that root exudates stimulate the expression of enzymes that are involved in decomposition of macromolecular C compounds. To assess how the abundance and diversity of decomposition enzymes differs in the rhizosphere relative to the surrounding bulk soil, we sequenced the community gene expression (metatranscriptomes) and single cell genomes of rhizosphere and bulk soil associated with wild oat (Avena fatua) over time (3, 6, 12, and 22 days). To isolate roots of a defined age in a mature plant, we used microcosms with a transparent experimental sidecar to track roots as they grew. Our results showed that a large number of C decomposition enzymes were more highly expressed in the rhizosphere compared to bulk soil, and that overall, transcripts tended to be elevated in younger roots than older roots. Genes relevant to aromatic C breakdown (nitroreductase, 4-hydroxybenzoate degradation, pectin methylesterase) and organic N cycling (ammonification) were elevated in the rhizosphere. This work identifies the potential molecular mechanisms that underpin priming in rhizosphere soil.

Simultaneous effects of leaf irradiance and soil moisture on growth and root system architecture of novel wheat genotypes: implications for phenotyping

PubMed Central

Nagel, Kerstin A.; Bonnett, David; Furbank, Robert; Walter, Achim; Schurr, Ulrich; Watt, Michelle

2015-01-01

Plants in the field are exposed to varying light and moisture. Agronomic improvement requires knowledge of whole-plant phenotypes expressed in response to simultaneous variation in these essential resources. Most phenotypes, however, have been described from experiments where resources are varied singularly. To test the importance of varying shoot and root resources for phenotyping studies, sister pre-breeding lines of wheat were phenotyped in response to independent or simultaneous exposure to two light levels and soil moisture profiles. The distribution and architecture of the root systems depended strongly on the moisture of the deeper soil layer. For one genotype, roots, specifically lateral roots, were stimulated to grow into moist soil when the upper zone was well-watered and were inhibited by drier deep zones. In contrast, the other genotype showed much less plasticity and responsiveness to upper moist soil, but maintained deeper penetration of roots into the dry layer. The sum of shoot and root responses was greater when treated simultaneously to low light and low soil water, compared to each treatment alone, suggesting the value of whole plant phenotyping in response to multiple conditions for agronomic improvement. The results suggest that canopy management for increased irradiation of leaves would encourage root growth into deeper drier soil, and that genetic variation within closely related breeding lines may exist to favour surface root growth in response to irrigation or in-season rainfall. PMID:26089535

Desirable plant root traits for protecting unstable slopes against landslides

NASA Astrophysics Data System (ADS)

Stokes, A.; Atger, C.; Bengough, G.; Fourcaud, T.; Sidle, R. C.

2009-04-01

A trait is defined as a distinct, quantitative property of organisms, usually measured at the individual level and used comparatively across species. Plant quantitative traits are extremely important for understanding the local ecology of any site. Plant height, architecture, root depth, wood density, leaf size and leaf nitrogen concentration control ecosystem processes and define habitat for other taxa. An engineer conjecturing as to how plant traits may directly influence physical processes occurring on sloping land just needs to consider how e.g. canopy architecture and litter properties influence the partitioning of rainfall among interception loss, infiltration and runoff. Plant traits not only influence abiotic processes occurring at a site, but also the habitat for animals and invertebrates. Depending on the goal of the landslide engineer, the immediate and long-term effects of plant traits in an environment must be considered if a site is to remain viable and ecologically successful. When vegetation is considered in models of slope stability, usually the only root parameters taken into consideration are tensile strength and root area ratio. Root system spatial structure is not considered, although the length, orientation and diameter of roots are recognized as being of importance. Thick roots act like soil nails on slopes, reinforcing soil in the same way that concrete is reinforced with steel rods. The spatial position of these thick roots also has an indirect effect on soil fixation in that the location of thin and fine roots will depend on the arrangement of thick roots. Thin and fine roots act in tension during failure on slopes and if they cross the slip surface, are largely responsible for reinforcing soil on slopes. Therefore, the most important trait to consider initially is rooting depth. To stabilize a slope against a shallow landslide, roots must cross the shear surface. The number and thickness of roots in this zone will therefore largely determine slope stability. Rooting depth is species dependent when soil conditions are not limiting and the number of horizontal lateral roots borne on the vertical roots usually changes with depth. Therefore, the number and orientation of roots that the shear surface intersects will change significantly with rooting depth for the same plant, even for magnitudes of only several cm. Similarly, depending on the geometry of the root system, the angle at which a root crosses the shear surface can also have an influence on its resistance to pullout and breakage. The angle at which a root emerges from the parent root is dependent on root type, depth and species (when soil conditions are not limiting). Due to the physiology of roots, a root branch can be initiated at any point along a parent root, but not necessarily emerge fully from the parent root. These traits, along with others including size, relative growth rate, regeneration strategies, wood structure and strength will be discussed with regard to their influence on slope stability. How each of these traits is influenced by soil conditions and plantation techniques is also of extreme importance to the landslide engineer. The presence of obstacles in the soil, as well as compaction, affects root length and branching pattern. Roots of many species of woody plants on shallow soils also tend to grow along fractures deep into the underlying bedrock which allows roots to locate supplies of nutrient and water rich pockets. Rooting depths of herbaceous species in water-limited environments are highly correlated with infiltration depth, but waterlogged soils can asphyxiate tree roots, resulting in shallow root systems. The need to understand and integrate each of these traits for a species is not easy. Therefore, we suggest a hierarchy whereby traits are considered in order of importance, along with how external factors influence their expression over time.

Local root abscisic acid (ABA) accumulation depends on the spatial distribution of soil moisture in potato: implications for ABA signalling under heterogeneous soil drying

PubMed Central

Puértolas, Jaime; Conesa, María R.; Ballester, Carlos; Dodd, Ian C.

2015-01-01

Patterns of root abscisic acid (ABA) accumulation ([ABA]root), root water potential (Ψroot), and root water uptake (RWU), and their impact on xylem sap ABA concentration ([X-ABA]) were measured under vertical partial root-zone drying (VPRD, upper compartment dry, lower compartment wet) and horizontal partial root-zone drying (HPRD, two lateral compartments: one dry, the other wet) of potato (Solanum tuberosum L.). When water was withheld from the dry compartment for 0–10 d, RWU and Ψroot were similarly lower in the dry compartment when soil volumetric water content dropped below 0.22cm3 cm–3 for both spatial distributions of soil moisture. However, [ABA]root increased in response to decreasing Ψroot in the dry compartment only for HPRD, resulting in much higher ABA accumulation than in VPRD. The position of the sampled roots (~4cm closer to the surface in the dry compartment of VPRD than in HPRD) might account for this difference, since older (upper) roots may accumulate less ABA in response to decreased Ψroot than younger (deeper) roots. This would explain differences in root ABA accumulation patterns under vertical and horizontal soil moisture gradients reported in the literature. In our experiment, these differences in root ABA accumulation did not influence [X-ABA], since the RWU fraction (and thus ABA export to shoots) from the dry compartment dramatically decreased simultaneously with any increase in [ABA]root. Thus, HPRD might better trigger a long-distance ABA signal than VPRD under conditions allowing simultaneous high [ABA]root and relatively high RWU fraction. PMID:25547916

Local root abscisic acid (ABA) accumulation depends on the spatial distribution of soil moisture in potato: implications for ABA signalling under heterogeneous soil drying.

PubMed

Puértolas, Jaime; Conesa, María R; Ballester, Carlos; Dodd, Ian C

2015-04-01

Patterns of root abscisic acid (ABA) accumulation ([ABA]root), root water potential (Ψroot), and root water uptake (RWU), and their impact on xylem sap ABA concentration ([X-ABA]) were measured under vertical partial root-zone drying (VPRD, upper compartment dry, lower compartment wet) and horizontal partial root-zone drying (HPRD, two lateral compartments: one dry, the other wet) of potato (Solanum tuberosum L.). When water was withheld from the dry compartment for 0-10 d, RWU and Ψroot were similarly lower in the dry compartment when soil volumetric water content dropped below 0.22cm(3) cm(-3) for both spatial distributions of soil moisture. However, [ABA]root increased in response to decreasing Ψroot in the dry compartment only for HPRD, resulting in much higher ABA accumulation than in VPRD. The position of the sampled roots (~4cm closer to the surface in the dry compartment of VPRD than in HPRD) might account for this difference, since older (upper) roots may accumulate less ABA in response to decreased Ψroot than younger (deeper) roots. This would explain differences in root ABA accumulation patterns under vertical and horizontal soil moisture gradients reported in the literature. In our experiment, these differences in root ABA accumulation did not influence [X-ABA], since the RWU fraction (and thus ABA export to shoots) from the dry compartment dramatically decreased simultaneously with any increase in [ABA]root. Thus, HPRD might better trigger a long-distance ABA signal than VPRD under conditions allowing simultaneous high [ABA]root and relatively high RWU fraction. © The Author 2014. Published by Oxford University Press on behalf of the Society for Experimental Biology.

The habits of roots: what's up down under?

NASA Technical Reports Server (NTRS)

Feldman, L. J.

1988-01-01

Defining interactions of roots with the surrounding soil environment has been the focus of many recent investigations. As a result of these efforts, we are gaining an appreciation of the varied and often surprising strategies whereby roots adjust to and condition their soil environment for optimal growth and development. This article summarizes current knowledge of the often complex interactions between roots and biotic and abiotic factors within the soil. These interactions are interpreted in terms of modifications in the development or the physiology of the root.

Effects of root exudates of woody species on the soil anti-erodibility in the rhizosphere in a karst region, China

PubMed Central

Chen, Mouhui

2017-01-01

Introduction Rhizospheres, the most active interfaces between plants and soils, play a central role in the long-term maintenance of the biosphere. The anti-erodibility of soils (AES) regulated by the root exudates is crucial to the soil stability in the rhizospheres. However, scientists still debate (1) the key organic matter of the root exudates affecting the AES and (2) the interspecific variation of these root exudates. Methods We used an incubation of soils to test the effects of the root exudates from eight woody plant species on the change in soil aggregation and identified the organic matter in these root exudates with gas chromatography-mass spectrometry (GC-MS) and biochemical methods. Furthermore, the relationships between the organic matter in the exudates and the AES in the rhizospheres of 34 additional tree species were analyzed. Results The water-stable aggregates of the soils incubated with the root exudates increased by 15%–50% on average compared with control samples. The interspecific differences were significant. The root exudates included hundreds of specific organic matter types; hydrocarbon, total sugar, total amino acids, and phenolic compounds were crucial to the AES. These organic matter types could explain approximately 20–75% of the variation in the total effect of the root exudates on the AES, which was quantified based on the aggregate status, degree of aggregation, dispersion ratio, and dispersion coefficient. Discussion The effects of the root exudates on the AES and the interspecific variation are as important as that of root density, litters, and vegetation covers. Many studies explored the effects of root density, litters, vegetation covers, and vegetation types on the AES, but little attention has been paid to the effects of the root exudates on the AES. Different plants secrete different relative contents of organic matter resulting in the variation of the effect of the root exudates on the AES. Our study quantified the causal relationships between the root exudates and the AES using modeling experiments in laboratory and field observations and indicated the interspecific variation of the AES and organic matter of the root exudates. Conclusions More organic compounds of the exudates related to the AES were recognized in this study. These results enhance the understanding of the soil stability at a slope and can be applied to ecosystem restoration. PMID:28265508

An approach for using general soil physical condition-root growth relationships to predict seedling growth response to site preparation tillage in loblolly pine plantations

Treesearch

L.A. Morris; K.H. Ludovici; S.J. Torreano; E.A. Carter; M.C. Lincoln; R.E. Will

2006-01-01

Tree seedling root growth rate can be limited by any one of three soil physical factors: mechanical resistance, water potential or soil aeration. All three factors vary with soil water content and, under field conditions, root growth rate will depend on the soil water content as a result of its relationship to each factor. For a specific site, the relationship between...

Mixtures of Olive Pomace with Different Nitrogen Sources for the Control of Meloidogyne spp. on Tomato

PubMed Central

Rodríguez-Kábana, R.; Estaún, V.; Pinochet, J.; Marfá, O.

1995-01-01

The efficacy of mixtures of dry olive (Olea europea) pomace with biuret, guanidine, and melamine for control of root-knot nematodes (Meloidogyne spp.) on tomato (Lycopersicon esculentum) was studied in greenhouse experiments. Olive pomace (OP) applied pre-plant at 10 g/kg soil was phytotoxic. Mixtures of OP (10 g/kg soil) with biuret or guanidine at 200-300 mg/kg soil reduced or eliminated the phytotoxic effect, controlled root-knot nematodes, and increased soil esterase activity indicative of microbial activity. The addition of biuret or guanidine without OP to soil at rates <300 mg/kg soil did not control root-knot nematodes. Melamine applied at 100-400 mg/kg soil was phytotoxic as were mixtures of melamine with OP. Treatment of OP with anhydrous ammonia increased N content of the material. In another greenhouse experiment, NH₃-treated OP added to soil was not phytotoxic to tomato, suppressed root-knot nematodes, and increased soil esterase activity. Greenhouse and microplot experiments with OP plus chicken litter demonstrated the efficacy of these combination amendments to control root-knot nematodes and increase tomato yields in Meloidogyne-infested soil. PMID:19277325

Estimating soil water content from ground penetrating radar coarse root reflections

NASA Astrophysics Data System (ADS)

Liu, X.; Cui, X.; Chen, J.; Li, W.; Cao, X.

2016-12-01

Soil water content (SWC) is an indispensable variable for understanding the organization of natural ecosystems and biodiversity. Especially in semiarid and arid regions, soil moisture is the plants primary source of water and largely determine their strategies for growth and survival, such as root depth, distribution and competition between them. Ground penetrating radar (GPR), a kind of noninvasive geophysical technique, has been regarded as an accurate tool for measuring soil water content at intermediate scale in past decades. For soil water content estimation with surface GPR, fixed antenna offset reflection method has been considered to have potential to obtain average soil water content between land surface and reflectors, and provide high resolution and few measurement time. In this study, 900MHz surface GPR antenna was used to estimate SWC with fixed offset reflection method; plant coarse roots (with diameters greater than 5 mm) were regarded as reflectors; a kind of advanced GPR data interpretation method, HADA (hyperbola automatic detection algorithm), was introduced to automatically obtain average velocity by recognizing coarse root hyperbolic reflection signals on GPR radargrams during estimating SWC. In addition, a formula was deduced to determine interval average SWC between two roots at different depths as well. We examined the performance of proposed method on a dataset simulated under different scenarios. Results showed that HADA could provide a reasonable average velocity to estimate SWC without knowledge of root depth and interval average SWC also be determined. When the proposed method was applied to estimation of SWC on a real-field measurement dataset, a very small soil water content vertical variation gradient about 0.006 with depth was captured as well. Therefore, the proposed method could be used to estimate average soil water content from ground penetrating radar coarse root reflections and obtain interval average SWC between two roots at different depths. It is very promising for measuring root-zone-soil-moisture and mapping soil moisture distribution around a shrub or even in field plot scale.

Defining the core Arabidopsis thaliana root microbiome

PubMed Central

Gehring, Jase; Malfatti, Stephanie; Tremblay, Julien; Engelbrektson, Anna; Kunin, Victor; del Rio, Tijana Glavina; Edgar, Robert C.; Eickhorst, Thilo; Ley, Ruth E.; Hugenholtz, Philip; Tringe, Susannah Green; Dangl, Jeffery L.

2014-01-01

Land plants associate with a root microbiota distinct from the complex microbial community present in surrounding soil. The microbiota colonizing therhizosphere(immediately surroundingthe root) and the endophytic compartment (within the root) contribute to plant growth, productivity, carbon sequestration and phytoremediation1-3. Colonization of the root occurs despite a sophisticated plant immune system4,5, suggesting finely tuned discrimination of mutualists and commensals from pathogens. Genetic principles governing the derivation of host-specific endophyte communities from soil communities are poorly understood. Here we report the pyrosequencing of the bacterial 16S ribosomal RNA gene of more than 600 Arabidopsis thaliana plants to test the hypotheses that the root rhizosphere and endophytic compartment microbiota of plants grown under controlled conditions in natural soils are sufficiently dependent on the host to remain consistent across different soil types and developmental stages, and sufficiently dependent on host genotype to vary between inbred Arabidopsis accessions. We describe different bacterial communities in two geochemically distinct bulk soils and in rhizosphere and endophytic compartments prepared from roots grown in these soils. The communities in each compartment are strongly influenced by soil type. Endophytic compartments from both soils feature overlapping, low-complexity communities that are markedly enriched in Actinobacteria and specific families from other phyla, notably Proteobacteria. Some bacteria vary quantitatively between plants of different developmental stage and genotype. Our rigorous definition of an endophytic compartment microbiome should facilitate controlled dissection of plantmicrobe interactions derived from complex soil communities. PMID:22859206

Ground Penetrating Radar For Estimating Root Biomass Through Empirical Analysis

NASA Astrophysics Data System (ADS)

Wolfe, M.; Dobreva, I. D.; Delgado, A.; Hays, D. B.; Bishop, M. P.; Huo, D.; Wang, X.; Teare, B. L.; Burris, S.

2017-12-01

Variability in soil carbon storage due to agricultural practices is an important component of the carbon cycle. Enhancing soil organic content is a means for restoring degraded soils and for improving soil quality, but also for carbon sequestration. In particular, accurate estimates of soil organic content are essential for quantifying carbon sequestration capabilities of agricultural systems. This project aims to advance the technological and analytical capabilities of Ground Penetrating Radar (GPR) for diagnoses of the soil carbon storage occurring due to the perennial grasses which are often utilized as biofuels. A new GPR processing workflow applied via a prototype software was tested on simulated GPR data of roots with different densities and depths to determine the sensitivity and capability of this technology to quantify these parameters. Field experiments were also conducted in long-term trials of different genotypes of perennial grasses over field sites in Texas to determine the application in authentic environments. GPR scans and soil samples were collected, and root dry biomass was obtained. Evaluation of pre-processing techniques was conducted to provide optimal resolution for assessment. The novel backscatter spatial structure workflow was implemented, and empirical relationships between root biomass and GPR derived observations were developed. Preliminary results suggest that the backscatter spatial structure changes in the presence of high density root biomass conditions, and these variations are indicative of root zone depth and density. Our results illustrate promising applications in root detection, and therefore, the soil organic content accumulation that is pertinent to a healthy soil system.

Contributions of root and shoot derived-C to soil organic matter throughout an agricultural soil profile assessed by compound-specific 13C analysis

NASA Astrophysics Data System (ADS)

Mendez-Millan, Mercedes; Dignac, Marie-France; Rumpel, Cornelia; Rasse, Daniel P.; Derenne, Sylvie

2010-05-01

The turnover of soil organic matter (SOM) is generally studied in the topsoil horizons, where the highest concentrations of organic carbon (OC) are found. Subsoils, although containing lower amounts of organic carbon compared to topsoils, greatly contribute to the total carbon stocks within a soil profile. An increase in SOM aliphaticity was observed during SOM degradation, and also down the soil profile, suggesting that the stable pool of SOM is enriched in aliphatic structures. These alkyl-C structures might mainly derive from cutins and suberins, two biomacromolecules, which contain biomarkers specific for shoot and root plant biomass. The aim of this study was to use cutin and suberin structural units to follow the incorporation of plant biomass originating from roots and shoots throughout an agricultural soil profile. We measured the 13C natural abundance of root and shoot biomarkers in samples taken from 15 to 105 cm depth in a C3/C4 chronosequence. After 9 years of maize (C4) cropping, the distribution of root biomarkers (diacids) significantly changed and their concentration increased compared to the wheat (CC3) soil. The largest increase was observed at 60-75 cm where diacids reached up to 134 ?g/gOC compared to 23 ?g/gOC in the wheat soil. Higher inputs from maize root biomass are also suggested by an average 13C enrichment of the root markers in the maize compared to the wheat soil.

Phytoremediation in the tropics--influence of heavy crude oil on root morphological characteristics of graminoids.

PubMed

Merkl, Nicole; Schultze-Kraft, Rainer; Infante, Carmen

2005-11-01

When studying species for phytoremediation of petroleum-contaminated soils, one of the main traits is the root zone where enhanced petroleum degradation takes place. Root morphological characteristics of three tropical graminoids were studied. Specific root length (SRL), surface area, volume and average root diameter (ARD) of plants grown in crude oil-contaminated and uncontaminated soil were compared. Brachiaria brizantha and Cyperus aggregatus showed coarser roots in polluted soil compared to the control as expressed in an increased ARD. B. brizantha had a significantly larger specific root surface area in contaminated soil. Additionally, a shift of SRL and surface area per diameter class towards higher diameters was found. Oil contamination also caused a significantly smaller SRL and surface area in the finest diameter class of C. aggregatus. The root structure of Eleusine indica was not significantly affected by crude oil. Higher specific root surface area was related to higher degradation of petroleum hydrocarbons found in previous studies.

Hydrologic Regulation of Plant Rooting Depth and Vice Versa

NASA Astrophysics Data System (ADS)

Fan, Y.; Miguez-Macho, G.

2017-12-01

How deep plant roots go and why may hold the answer to several questions regarding the co-evolution of terrestrial life and its environment. In this talk we explore how plant rooting depth responds to the hydrologic plumbing system in the soil/regolith/bedrocks, and vice versa. Through analyzing 2200 root observations of >1000 species along biotic (life form, genus) and abiotic (precipitation, soil, drainage) gradients, we found strong sensitivities of rooting depth to local soil water profiles determined by precipitation infiltration depth from the top (reflecting climate and soil), and groundwater table depth from below (reflecting topography-driven land drainage). In well-drained uplands, rooting depth follows infiltration depth; in waterlogged lowlands, roots stay shallow avoiding oxygen stress below the water table; in between, high productivity and drought can send roots many meters down to groundwater capillary fringe. We explore the global significance of this framework using an inverse model, and the implications to the coevolution of deep roots and the CZ in the Early-Mid Devonian when plants colonized the upland environments.

Local Soils Information Needed to Define the Root Zone in Process Models on the Gulf Coastal Plain

Treesearch

Mary Anne Sword Sayer; Allan E. Tiarks

2002-01-01

We combined published information and our own experimental results from the Gulf Coastal Plain to evaluate how soil aeration and strength interact with loblolly pine root growth. Our results demonstrate that soil aeration and strength differ by soil series and year and are subject to vertical and horizontal spatial variation. Comparison of loblolly pine root phenology...

Localized application of soil organic matter shifts distribution of cluster roots of white lupin in the soil profile due to localized release of phosphorus

PubMed Central

Li, Hai-Gang; Shen, Jian-Bo; Zhang, Fu-Suo; Lambers, Hans

2010-01-01

Background and Aims Phosphorus (P) is a major factor controlling cluster-root formation. Cluster-root proliferation tends to concentrate in organic matter (OM)-rich surface-soil layers, but the nature of this response of cluster-root formation to OM is not clear. Cluster-root proliferation in response to localized application of OM was characterized in Lupinus albus (white lupin) grown in stratified soil columns to test if the stimulating effect of OM on cluster-root formation was due to (a) P release from breakdown of OM; (b) a decrease in soil density; or (c) effects of micro-organisms other than releasing P from OM. Methods Lupin plants were grown in three-layer stratified soil columns where P was applied at 0 or 330 mg P kg−1 to create a P-deficient or P-sufficient background, and OM, phytate mixed with OM, or perlite was applied to the top or middle layers with or without sterilization. Key Results Non-sterile OM stimulated cluster-root proliferation and root length, and this effect became greater when phytate was supplied in the presence of OM. Both sterile OM and perlite significantly decreased cluster-root formation in the localized layers. The OM position did not change the proportion of total cluster roots to total roots in dry biomass among no-P treatments, but more cluster roots were concentrated in the OM layers with a decreased proportion in other places. Conclusions Localized application of non-sterile OM or phytate plus OM stimulated cluster-root proliferation of L. albus in the localized layers. This effect is predominantly accounted for by P release from breakdown of OM or phytate, but not due to a change in soil density associated with OM. No evidence was found for effects of micro-organisms in OM other than those responsible for P release. PMID:20150198

Root traits and soil properties in harvested perennial grassland, annual wheat, and never-tilled annual wheat

USDA-ARS?s Scientific Manuscript database

Background and aims: Root functional traits are determinants of soil carbon storage; plant productivity; and ecosystemproperties. However, few studies look at both annual and perennial roots, soil properties, and productivity in the context of field scale agricultural systems. Methods: In Long Term...

Micromechanics of root development in soil.

PubMed

Dupuy, L X; Mimault, M; Patko, D; Ladmiral, V; Ameduri, B; MacDonald, M P; Ptashnyk, M

2018-04-16

Our understanding of how roots develop in soil may be at the eve of significant transformations. The formidable expansion of imaging technologies enables live observations of the rhizosphere micro-pore architecture at unprecedented resolution. Granular matter physics provides ways to understand the microscopic fluctuations of forces in soils, and the increasing knowledge of plant mechanobiology may shed new lights on how roots perceive soil heterogeneity. This opinion paper exposes how recent scientific achievements may contribute to refresh our views on root growth in heterogeneous environments. Copyright © 2018 Elsevier Ltd. All rights reserved.

Accounting for sap flow from different parts of the root system improves the prediction of xylem ABA concentration in plants grown with heterogeneous soil moisture.

PubMed

Dodd, Ian C; Egea, Gregorio; Davies, William J

2008-01-01

When soil moisture is heterogeneous, sap flow from, and ABA status of, different parts of the root system impact on leaf xylem ABA concentration ([X-ABA]leaf). The robustness of a model for predicting [X-ABA]leaf was assessed. 'Two root-one shoot' grafted sunflower (Helianthus annuus L.) plants received either deficit irrigation (DI, each root system received the same irrigation volumes) or partial rootzone drying (PRD, only one root system was watered and the other dried the soil). Irrespective of whether relative sap flow was assessed using sap flow sensors in vivo or by pressurization of de-topped roots, each root system contributed similarly to total sap flow during DI, while sap flow from roots in drying soil declined linearly with soil water potential (Psisoil) during PRD. Although Psisoil of the irrigated pot determined the threshold Psisoil at which sap flow from roots in drying soil decreased, the slope of this decrease was independent of the wet pot Psisoil. Irrespective of whether sap was collected from the wet or dry root system of PRD plants, or a DI plant, root xylem ABA concentration increased as Psisoil declined. The model, which weighted ABA contributions of each root system according to the sap flow from each, almost perfectly explained [X-ABA] immediately above the graft union. That the model overestimated measured [X-ABA]leaf may result from changes in [X-ABA] along the transport pathway or an artefact of collecting xylem sap from detached leaves. The implications of declining sap flow through partially dry roots during PRD for the control of stomatal behaviour and irrigation scheduling are discussed.

Root-Derived Short-Chain Suberin Diacids from Rice and Rape Seed in a Paddy Soil under Rice Cultivar Treatments

PubMed Central

Ji, Haishi; Ding, Yuanjun; Liu, Xiaoyu; Li, Lianqing; Zhang, Dengxiao; Li, Zichuan; Sun, Jingling; Lashari, Muhammad Siddique; Joseph, Stephen; Meng, Yuanduo; Kuzyakov, Yakov; Pan, Genxing

2015-01-01

Suberin-derived substituted fatty acids have been shown to be potential biomarkers for plant-derived carbon (C) in soils across ecosystems. Analyzing root derived suberin compounds bound in soil could help to understand the root input into a soil organic carbon pool. In this study, bound lipids were extracted and identified in root and topsoil samples. Short-chain suberin diacids were quantified under rice (Oryza sativa L.) and rape (Brassica campestris) rotations with different cultivar combinations in a Chinese rice paddy. After removal of free lipids with sequential extraction, the residual bound lipids were obtained with saponification and derivatization before analysis using gas chromatography–mass spectrometry (GC-MS). Diacids C16 and C18 in bound lipids were detected both in rice and rape root samples, while diacids C20 and C22 were detected only in rape root samples. Accordingly, diacids were quantified in both rhizosphere and bulk soil (0–15 cm). The amount of total root-derived diacids in bulk soil varied in a range of 5.6–9.6 mg/kg across growth stages and crop seasons. After one year-round rice-rape rotation, root-derived suberin diacids were maintained at a level of 7–9 mg/kg in bulk soil; this was higher under a super rice cultivar LY than under a hybrid cultivar IIY. While concentrations of the analyzed diacids were generally higher in rhizosphere than in bulk soil, the total diacid (DA) concentration was higher at the time of rape harvest than at rice harvest, suggesting that rape roots made a major contribution to the preservation of diacids in the paddy. Moreover, the net change in the concentration and the ratios of C16:0 DA to C18:1 DA, and of C16:0 DA to C18:0 DA, over a whole growing season, were greater under LY than under IIY, though there was no difference between cultivars within a single growth stage. Overall, total concentration of root-derived suberin diacids was found to be positively correlated to soil organic carbon concentration both for bulk soil and rhizosphere. However, the turnover and preservation of the root suberin biomolecules with soil property and field conditions deserve further field studies. PMID:25961557

Root-Derived Short-Chain Suberin Diacids from Rice and Rape Seed in a Paddy Soil under Rice Cultivar Treatments.

PubMed

Ji, Haishi; Ding, Yuanjun; Liu, Xiaoyu; Li, Lianqing; Zhang, Dengxiao; Li, Zichuan; Sun, Jingling; Lashari, Muhammad Siddique; Joseph, Stephen; Meng, Yuanduo; Kuzyakov, Yakov; Pan, Genxing

2015-01-01

Suberin-derived substituted fatty acids have been shown to be potential biomarkers for plant-derived carbon (C) in soils across ecosystems. Analyzing root derived suberin compounds bound in soil could help to understand the root input into a soil organic carbon pool. In this study, bound lipids were extracted and identified in root and topsoil samples. Short-chain suberin diacids were quantified under rice (Oryza sativa L.) and rape (Brassica campestris) rotations with different cultivar combinations in a Chinese rice paddy. After removal of free lipids with sequential extraction, the residual bound lipids were obtained with saponification and derivatization before analysis using gas chromatography-mass spectrometry (GC-MS). Diacids C16 and C18 in bound lipids were detected both in rice and rape root samples, while diacids C20 and C22 were detected only in rape root samples. Accordingly, diacids were quantified in both rhizosphere and bulk soil (0-15 cm). The amount of total root-derived diacids in bulk soil varied in a range of 5.6-9.6 mg/kg across growth stages and crop seasons. After one year-round rice-rape rotation, root-derived suberin diacids were maintained at a level of 7-9 mg/kg in bulk soil; this was higher under a super rice cultivar LY than under a hybrid cultivar IIY. While concentrations of the analyzed diacids were generally higher in rhizosphere than in bulk soil, the total diacid (DA) concentration was higher at the time of rape harvest than at rice harvest, suggesting that rape roots made a major contribution to the preservation of diacids in the paddy. Moreover, the net change in the concentration and the ratios of C16:0 DA to C18:1 DA, and of C16:0 DA to C18:0 DA, over a whole growing season, were greater under LY than under IIY, though there was no difference between cultivars within a single growth stage. Overall, total concentration of root-derived suberin diacids was found to be positively correlated to soil organic carbon concentration both for bulk soil and rhizosphere. However, the turnover and preservation of the root suberin biomolecules with soil property and field conditions deserve further field studies.

On the relative roles of hydrology, salinity, temperature, and root productivity in controlling soil respiration from coastal swamps (freshwater)

USGS Publications Warehouse

Krauss, Ken W.; Whitbeck, Julie L.; Howard, Rebecca J.

2012-01-01

Background and aims Soil CO2 emissions can dominate gaseous carbon losses from forested wetlands (swamps), especially those positioned in coastal environments. Understanding the varied roles of hydroperiod, salinity, temperature, and root productivity on soil respiration is important in discerning how carbon balances may shift as freshwater swamps retreat inland with sea-level rise and salinity incursion, and convert to mixed communities with marsh plants. Methods We exposed soil mesocosms to combinations of permanent flooding, tide, and salinity, and tracked soil respiration over 2 1/2 growing seasons. We also related these measurements to rates from field sites along the lower Savannah River, Georgia, USA. Soil temperature and root productivity were assessed simultaneously for both experiments. Results Soil respiration from mesocosms (22.7-1678.2 mg CO2 m-2 h-1) differed significantly among treatments during four of the seven sampling intervals, where permanently flooded treatments contributed to low rates of soil respiration and tidally flooded treatments sometimes contributed to higher rates. Permanent flooding reduced the overall capacity for soil respiration as soils warmed. Salinity did reduce soil respiration at times in tidal treatments, indicating that salinity may affect the amount of CO2 respired with tide more strongly than under permanent flooding. However, soil respiration related greatest to root biomass (mesocosm) and standing root length (field); any stress reducing root productivity (incl. salinity and permanent flooding) therefore reduces soil respiration. Conclusions Overall, we hypothesized a stronger, direct role for salinity on soil respiration, and found that salinity effects were being masked by varied capacities for increases in respiration with soil warming as dictated by hydrology, and the indirect influence that salinity can have on plant productivity.

Effects of Soil Compaction and Organic Matter Removal on Morphology of Secondary Roots of Loblolly Pine

Treesearch

Charles H. Walkinshaw; Allan E. Tiarks

1998-01-01

Root studies are being used to monitor possible changes in growth of loblolly pines on a long-term soil productibity study site. Here, we report the results of a preliminary look sat roots in the sizth growing season. Roots were collected from loblly pines gorwn in soil that was first subjected to three levels of compaction )none, moderate, severe) and three levels...

Effects of root pruning on the physicochemical properties and microbial activities of poplar rhizosphere soil.

PubMed

Jing, Da-Wei; Liu, Fang-Chun; Wang, Ming-You; Ma, Hai-Lin; Du, Zhen-Yu; Ma, Bing-Yao; Dong, Yu-Feng

2017-01-01

This study aimed to determine the effects of root pruning on the physicochemical characteristics and microbial activities of poplar rhizosphere soil. The root systems of 5-year-old poplar (Populus×euramericana cv. 'Neva') trees were manually pruned at 6, 8, or 10 times diameter at breast height (DBH) from the trunk (severe, moderate, and light, respectively) along both inter-row sides. Moderate root pruning significantly increased the concentrations of amino acids, organic acids, and total sugars in the root exudates and decreased the pH of rhizosphere soil. This treatment also increased the contents of available nitrogen, phosphorus, potassium, and total organic carbon as well as high-, medium-, and low-activity organic carbon in rhizosphere soil. Moreover, moderate pruning increased the contents of microbial biomass carbon and nitrogen, and enhanced basal respiration, in addition to decreasing the metabolic quotients in rhizosphere soil by 8.9%, 5.0%, and 11.4% compared with control, light, and severe root pruning treatments, respectively. Moderate pruning increased the growth rates of DBH, tree height, and volume to the highest levels. Furthermore, these indices were not significantly different between the light root pruning and control groups, but varied significantly between severe and moderate root-pruning treatments. Thus, root pruning, depending on the distance from the trunk, significantly influences the physicochemical properties and microbial activities in poplar rhizosphere soil.

Effects of root pruning on the physicochemical properties and microbial activities of poplar rhizosphere soil

PubMed Central

Jing, Da-Wei; Liu, Fang-Chun; Wang, Ming-You; Ma, Hai-Lin; Du, Zhen-Yu; Ma, Bing-Yao; Dong, Yu-Feng

2017-01-01

This study aimed to determine the effects of root pruning on the physicochemical characteristics and microbial activities of poplar rhizosphere soil. The root systems of 5-year-old poplar (Populus×euramericana cv. ‘Neva’) trees were manually pruned at 6, 8, or 10 times diameter at breast height (DBH) from the trunk (severe, moderate, and light, respectively) along both inter-row sides. Moderate root pruning significantly increased the concentrations of amino acids, organic acids, and total sugars in the root exudates and decreased the pH of rhizosphere soil. This treatment also increased the contents of available nitrogen, phosphorus, potassium, and total organic carbon as well as high-, medium-, and low-activity organic carbon in rhizosphere soil. Moreover, moderate pruning increased the contents of microbial biomass carbon and nitrogen, and enhanced basal respiration, in addition to decreasing the metabolic quotients in rhizosphere soil by 8.9%, 5.0%, and 11.4% compared with control, light, and severe root pruning treatments, respectively. Moderate pruning increased the growth rates of DBH, tree height, and volume to the highest levels. Furthermore, these indices were not significantly different between the light root pruning and control groups, but varied significantly between severe and moderate root-pruning treatments. Thus, root pruning, depending on the distance from the trunk, significantly influences the physicochemical properties and microbial activities in poplar rhizosphere soil. PMID:29117215

Effect of Piriformospora indica inoculation on root development and distribution of maize (Zea mays L.) in the presence of petroleum contaminated soil

NASA Astrophysics Data System (ADS)

Zamani, Javad; Hajabbasi, Mohammad Ali; Alaie, Ebrahim

2014-05-01

The root systems of most terrestrial plants are confronted to various abiotic and biotic stresses. One of these abiotic stresses is contamination of soil with petroleum hydrocarbon, which the efficiency of phytoremediation of petroleum hydrocarbons in soils is dependent on the ability of plant roots to development into the contaminated soils. Piriformospora indica represents a recently discovered fungus that transfers considerable beneficial impact to its host plants. A rhizotron experiment was conducted to study the effects of P. Indica inoculation on root distribution and root and shoot development of maize (Zea mays L.) in the presence of three patterns of petroleum contamination in the soil (subsurface contamination, continuous contamination and without contamination (control)). Root distribution and root and shoot development were monitored over time. The final root and shoot biomass and the final TPH concentration in the rhizosphere were determined. Analysis of digitized images which were prepared of the tracing of the appeared roots along the front rhizotrons showed the depth and total length of root network in the contamination treatments were significantly decreased. Although the degradation of TPH in the rhizosphere of maize was significant, but there were no significant differences between degradation of TPH in the rhizosphere of +P. indica plants in comparison to -P. indica plants.

Effects and mechanisms of meta-sodium silicate amendments on lead uptake and accumulation by rice.

PubMed

Zhao, Mingliu; Liu, Yuting; Li, Honghong; Cai, Yifan; Wang, Ming Kuang; Chen, Yanhui; Xie, Tuanhui; Wang, Guo

2017-09-01

The objectives of this research were to study the effects of Na 2 SiO 3 application on the uptake, translocation, and accumulation of Pb in rice and to investigate the mechanisms of Pb immobilization by Na 2 SiO 3 in paddy rice soils and rice plants. Pot experiments were conducted using a Cd-Pb-Zn-polluted soil and Oryza sativa L. ssp. indica cv. Donglian 5. L 3 -edge X-ray absorption spectroscopy was used to identify Pb species in soils and roots. The results showed that the application of Na 2 SiO 3 increased soil pH and available soil Si but decreased DTPA-extractable Pb in the soil. High dose of Na 2 SiO 3 (12.5 g/kg) reduced the Pb level in brown rice as it inhibited Pb transfer from soil to rice grains, especially Pb transfer from the root to the stem. The Pb X-ray absorption near-edge spectroscopic analysis revealed that application of high dose of Na 2 SiO 3 increased Pb-ferrihydrite and PbSiO 3 precipitates in the soil and in the root while it reduced Pb-humic acids (Pb-HAs) in the soil and Pb-pectin in the root. The decrease in Pb availability in the soil can be partly attributed to increase the precipitation of PbSiO 3 and the association of Pb 2+ with Fe oxides in the soil. The inhibition of the root-to-stem translocation of Pb was partially due to the precipitation of PbSiO 3 on the root surfaces or inside the roots.

Interactive effects of soil acidity and fluoride on soil solution aluminium chemistry and barley (Hordeum vulgare L.) root growth.

PubMed

Manoharan, V; Loganathan, P; Tillman, R W; Parfitt, R L

2007-02-01

A greenhouse study was conducted to determine if concentrations of fluoride (F), which would be added to acid soils via P fertilisers, were detrimental to barley root growth. Increasing rates of F additions to soil significantly increased the soil solution concentrations of aluminium (Al) and F irrespective of the initial adjusted soil pH, which ranged from 4.25 to 5.48. High rates of F addition severely restricted root growth; the effect was more pronounced in the strongly acidic soil. Speciation calculations demonstrated that increasing rates of F additions substantially increased the concentrations of Al-F complexes in the soil. Stepwise regression analysis showed that it was the combination of the activities of AlF2(1+) and AlF(2+) complexes that primarily controlled barley root growth. The results suggested that continuous input of F to soils, and increased soil acidification, may become an F risk issue in the future.

Root type matters: measurements of water uptake by seminal, crown and lateral roots of maize

NASA Astrophysics Data System (ADS)

Ahmed, Mutez Ali; Zarebanadkouki, Mohsen; Kaestner, Anders; Carminati, Andrea

2016-04-01

Roots play a key role in water acquisition and are a significant component of plant adaptation to different environmental conditions. Although maize (Zea mays L.) is one of the most important crops worldwide, there is limited information on the function of different root segments and types in extracting water from soils. Aim of this study was to investigate the location of root water uptake in mature maize. We used neutron radiography to image the spatial distribution of maize roots and trace the transport of injected deuterated water (D2O) in soil and roots. Maize plants were grown in aluminum containers filled with a sandy soil that was kept homogeneously wet throughout the experiment. When the plants were five weeks-old, we injected D2O into selected soil regions. The transport of D2O was simulated using a diffusion-convection numerical model. By fitting the observed D2O transport we quantified the diffusion coefficient and the water uptake of the different root segments. The model was initially developed and tested with two weeks-old maize (Ahmed et. al. 2015), for which we found that water was mainly taken up by lateral roots and the water uptake of the seminal roots was negligible. Here, we used this method to measure root water uptake in a mature maize root system. The root architecture of five weeks-old maize consisted of primary and seminal roots with long laterals and crown (nodal) roots that emerged from the above ground part of the plant two weeks after planting. The crown roots were thicker than the seminal roots and had fewer and shorter laterals. Surprisingly, we found that the water was mainly taken up by the crown roots and their laterals, while the lateral roots of seminal roots, which were the main location of water uptake of younger plants, stopped to take up water. Interestingly, we also found that in contrast to the seminal roots, the crown roots were able to take up water also from their distal segments. We conclude that for the two weeks-old maize the function of lateral roots is to absorb water from the soil, while the function of the primary and seminal roots is to axially transport water to the shoot. For the five weeks-old maize, water was mainly taken up by the crown roots and their associated laterals. The ability of crown roots to uptake water from the distal segments can help maize to extract water from deep soil layers and better tolerate drought. Reference Ahmed MA, Zarebanadkouki M, Kaestner A, Carminati A (2015) Measurements of water uptake of maize roots: the key function of lateral roots. Plant and Soil 1-19. doi: 10.1007/s11104-015-2639-6

A global analysis of fine root production as affected by soil nitrogen and phosphorus.

PubMed

Yuan, Z Y; Chen, Han Y H

2012-09-22

Fine root production is the largest component of belowground production and plays substantial roles in the biogeochemical cycles of terrestrial ecosystems. The increasing availability of nitrogen (N) and phosphorus (P) due to human activities is expected to increase aboveground net primary production (ANNP), but the response of fine root production to N and P remains unclear. If roots respond to nutrients as ANNP, fine root production is anticipated to increase with increasing soil N and P. Here, by synthesizing data along the nutrient gradient from 410 natural habitats and from 469 N and/or P addition experiments, we showed that fine root production increased in terrestrial ecosystems with an average increase along the natural N gradient of up to 0.5 per cent with increasing soil N. Fine root production also increased with soil P in natural conditions, particularly at P < 300 mg kg(-1). With N, P and combined N + P addition, fine root production increased by a global average of 27, 21 and 40 per cent, respectively. However, its responses differed among ecosystems and soil types. The global average increases in fine root production are lower than those of ANNP, indicating that above- and belowground counterparts are coupled, but production allocation shifts more to aboveground with higher soil nutrients. Our results suggest that the increasing fertilizer use and combined N deposition at present and in the future will stimulate fine root production, together with ANPP, probably providing a significant influence on atmospheric CO(2) emissions.

Hydrologic regulation of plant rooting depth

PubMed Central

Miguez-Macho, Gonzalo; Jobbágy, Esteban G.; Jackson, Robert B.; Otero-Casal, Carlos

2017-01-01

Plant rooting depth affects ecosystem resilience to environmental stress such as drought. Deep roots connect deep soil/groundwater to the atmosphere, thus influencing the hydrologic cycle and climate. Deep roots enhance bedrock weathering, thus regulating the long-term carbon cycle. However, we know little about how deep roots go and why. Here, we present a global synthesis of 2,200 root observations of >1,000 species along biotic (life form, genus) and abiotic (precipitation, soil, drainage) gradients. Results reveal strong sensitivities of rooting depth to local soil water profiles determined by precipitation infiltration depth from the top (reflecting climate and soil), and groundwater table depth from below (reflecting topography-driven land drainage). In well-drained uplands, rooting depth follows infiltration depth; in waterlogged lowlands, roots stay shallow, avoiding oxygen stress below the water table; in between, high productivity and drought can send roots many meters down to the groundwater capillary fringe. This framework explains the contrasting rooting depths observed under the same climate for the same species but at distinct topographic positions. We assess the global significance of these hydrologic mechanisms by estimating root water-uptake depths using an inverse model, based on observed productivity and atmosphere, at 30″ (∼1-km) global grids to capture the topography critical to soil hydrology. The resulting patterns of plant rooting depth bear a strong topographic and hydrologic signature at landscape to global scales. They underscore a fundamental plant–water feedback pathway that may be critical to understanding plant-mediated global change. PMID:28923923

Hydrologic regulation of plant rooting depth.

PubMed

Fan, Ying; Miguez-Macho, Gonzalo; Jobbágy, Esteban G; Jackson, Robert B; Otero-Casal, Carlos

2017-10-03

Plant rooting depth affects ecosystem resilience to environmental stress such as drought. Deep roots connect deep soil/groundwater to the atmosphere, thus influencing the hydrologic cycle and climate. Deep roots enhance bedrock weathering, thus regulating the long-term carbon cycle. However, we know little about how deep roots go and why. Here, we present a global synthesis of 2,200 root observations of >1,000 species along biotic (life form, genus) and abiotic (precipitation, soil, drainage) gradients. Results reveal strong sensitivities of rooting depth to local soil water profiles determined by precipitation infiltration depth from the top (reflecting climate and soil), and groundwater table depth from below (reflecting topography-driven land drainage). In well-drained uplands, rooting depth follows infiltration depth; in waterlogged lowlands, roots stay shallow, avoiding oxygen stress below the water table; in between, high productivity and drought can send roots many meters down to the groundwater capillary fringe. This framework explains the contrasting rooting depths observed under the same climate for the same species but at distinct topographic positions. We assess the global significance of these hydrologic mechanisms by estimating root water-uptake depths using an inverse model, based on observed productivity and atmosphere, at 30″ (∼1-km) global grids to capture the topography critical to soil hydrology. The resulting patterns of plant rooting depth bear a strong topographic and hydrologic signature at landscape to global scales. They underscore a fundamental plant-water feedback pathway that may be critical to understanding plant-mediated global change.

Hydrologic regulation of plant rooting depth

NASA Astrophysics Data System (ADS)

Fan, Ying; Miguez-Macho, Gonzalo; Jobbágy, Esteban G.; Jackson, Robert B.; Otero-Casal, Carlos

2017-10-01

Plant rooting depth affects ecosystem resilience to environmental stress such as drought. Deep roots connect deep soil/groundwater to the atmosphere, thus influencing the hydrologic cycle and climate. Deep roots enhance bedrock weathering, thus regulating the long-term carbon cycle. However, we know little about how deep roots go and why. Here, we present a global synthesis of 2,200 root observations of >1,000 species along biotic (life form, genus) and abiotic (precipitation, soil, drainage) gradients. Results reveal strong sensitivities of rooting depth to local soil water profiles determined by precipitation infiltration depth from the top (reflecting climate and soil), and groundwater table depth from below (reflecting topography-driven land drainage). In well-drained uplands, rooting depth follows infiltration depth; in waterlogged lowlands, roots stay shallow, avoiding oxygen stress below the water table; in between, high productivity and drought can send roots many meters down to the groundwater capillary fringe. This framework explains the contrasting rooting depths observed under the same climate for the same species but at distinct topographic positions. We assess the global significance of these hydrologic mechanisms by estimating root water-uptake depths using an inverse model, based on observed productivity and atmosphere, at 30″ (˜1-km) global grids to capture the topography critical to soil hydrology. The resulting patterns of plant rooting depth bear a strong topographic and hydrologic signature at landscape to global scales. They underscore a fundamental plant-water feedback pathway that may be critical to understanding plant-mediated global change.

Can ectomycorrhizal symbiosis and belowground plant traits be used as ecological tools to mitigate erosion on degraded slopes in the ultramafic soils of New Caledonia?

NASA Astrophysics Data System (ADS)

Demenois, Julien; Carriconde, Fabian; Rey, Freddy; Stokes, Alexia

2015-04-01

New Caledonia is an archipelago in the South West Pacific located just above the Tropic of Capricorn. The main island is bisected by a continuous mountain chain whose highest peaks reach more than 1 600 m. With mean annual rainfall above 2 000 mm in the South of the main island, frequent downpours and steep slopes, its soils are prone to water erosion. Deforestation, fires and mining activity are the main drivers of water erosion. Stakes are high to mitigate the phenomenon: extraction of nickel from ultramafic substrates (one third of the whole territory) is the main economic activity; New Caledonia is considered as a biodiversity hotspot. Restoration ecology is seen as a key approach for tackling such environmental challenges. Soil microorganisms could play significant roles in biological processes such as plant nutrition and plant resistance to abiotic and biotic stresses. Microorganisms could increase soil aggregate stability and thus mitigate soil erodibility. Plant roots increase soil cohesion through exudation and decomposition processes. To date, few studies have collected data on the soil aggregate stability of steep slopes affected by erosion and, to our knowledge, interactions between ectomycorrhizas (ECM), roots and erodibility of ultramafic soils have never been considered. The objective of our study is to assess the influence of ECM symbiosis and plant root traits on the erodibility of ultramafic soils of New Caledonia and answer the following questions: 1/ What is the influence of plant root traits of vegetal communities and ECM fungal diversity on soil erodibility? 2/ What are the belowground plant traits of some mycorrhized endemic species used in ecological restoration? 3/ What is the influence of plant root traits and ECM fungal inoculation on soil erodibility? At the scale of plant communities, five types of vegetation have been chosen in the South of the main island: degraded ligno-herbaceous shrubland, ligno-herbaceous shrubland, degraded humid forest with dominance of Arillastrum gummiferum, dense humid forest with dominance of Nothofagus aequilateralis, and finally mixed dense humid forest. These types of vegetation are widely represented on ultramafic soils of New Caledonia and are likely to correspond to different successional phases. At the scale of species, dominant species in the above-mentioned types of vegetation are considered for herbaceous, shrubs and trees strata. Root traits of Costularia nervosa, Tristaniopsis glauca, Nothofagus aequilateralis and Arillastrum gummiferum are then characterized in situ. These species are of particular interest for post-mining ecological restoration in New Caledonia as they are light-tolerant, endemic, associated with ECM (except for Costularia nervosa) and of particular interest or already used by mining operators for post-mining ecological restoration. For both scales (community and species), soil characteristics will be collected. Very fine and fine roots, mean root diameter, root diameter diversity, root mass density, root length density, and specific root length will be considered. Degree of ectomycorrhization and fungal biomass through qPCR will be determined. Soil aggregate stability will be measured according to the standardized method NF X 31-515. Besides, greenhouse trials with Costularia nervosa, Tristaniopsis glauca and Arillastrum gummiferum are carried out to assess the influence of plant root traits, fungal inoculation and soil aggregate stability. Controlled plant inoculations are performed using available pure fungal strains isolated from New Caledonian ultramafic soils. Plants have been bred on sterilized soil samples from the field sites. Through this study, we target to identify associations between ECM fungi and plant species that could mitigate the erodibility of degraded ultramafic soils and then water erosion. A better knowledge of interactions between soil aggregate stability, ECM fungi and plant root traits is then expected to answer the following question: can soil aggregate stability be used as a bio-indicator of ecosystem functioning and services?

Metal-Assisted Laser-Induced Gas Plasma for the Direct Analysis of Powder Using Pulse CO2 Laser

NASA Astrophysics Data System (ADS)

Khumaeni, A.; Lie, Z. S.; Kurniawan, K. H.; Kagawa, K.

2017-01-01

Analysis of powder samples available in small quantities has been carried out using metal-assisted gas plasma by utilizing a transversely excited atmospheric (TEA) CO2 laser. The powder was homogeneously mixed with Si grease, and the mixed powder was painted on a metal subtarget. When a TEA CO2 laser was directly focused on the metal subtarget at atmospheric pressure of He gas, a high-temperature He gas plasma was induced. It is assumed that the powder particles were vaporized to be effectively atomized and excited in the gas plasma region. This method has been employed in the rapid analyses of elements in organic and inorganic powder samples present in small quantities. Detection of trace elements of Cr and Pb has been successfully made by using the supplement powder and loam soil, respectively. The detection limits of Pb in loam soil were approximately 20 mg/kg.

Effect of polyphenols on oxidative stress and mitochondrial dysfunction in neuronal death, brain edema, and cell swelling in cerebral ischemia

USDA-ARS?s Scientific Manuscript database

Polyphenols are natural substances with variable phenolic structures and are elevated in vegetables, fruits, grains, bark, roots, tea, and wine. while there are over 8000 polyphenolic structures identified in plants, edible plants contain only several hundred polyphenolic structures. In addition t...

Root density of cherry trees grafted on prunus mahaleb in a semi-arid region

NASA Astrophysics Data System (ADS)

Paltineanu, Cristian; Septar, Leinar; Gavat, Corina; Chitu, Emil; Oprita, Alexandru; Moale, Cristina; Lamureanu, Gheorghe; Vrinceanu, Andrei

2016-07-01

Root density was investigated using the trench method in a cherry (Prunus avium grafted on Prunus mahaleb) orchard with clean cultivation in inter-rows and in-row. Trenches of 1 m width and 1.2 m depth were dug up between neighbouring trees. The objectives of the paper were to clarify the spatial distribution of root density of cherry trees under the soil and climate conditions of the region to expand knowledge of optimum planting distance and orchard management for a broad area of chernozems. Some soil physical properties were significantly worsened in inter-rows versus in-row, mainly due to soil compaction, and there were higher root density values in in-row versus inter-rows. Root density decreased more intensely with soil depth than with distance from trees. The pattern of root density suggests that the cherry tree density and fruit yield could be increased. However, other factors concerning orchard management and fruit yield should also be considered. The results obtained have a potential impact to improve irrigation and fertilizer application by various methods, considering the soil depth and distance from trees to wet soil, in accordance with root development.

Model development for prediction of soil water dynamics in plant production.

PubMed

Hu, Zhengfeng; Jin, Huixia; Zhang, Kefeng

2015-09-01

Optimizing water use in agriculture and medicinal plants is crucially important worldwide. Soil sensor-controlled irrigation systems are increasingly becoming available. However it is questionable whether irrigation scheduling based on soil measurements in the top soil could make best use of water for deep-rooted crops. In this study a mechanistic model was employed to investigate water extraction by a deep-rooted cabbage crop from the soil profile throughout crop growth. The model accounts all key processes governing water dynamics in the soil-plant-atmosphere system. Results show that the subsoil provides a significant proportion of the seasonal transpiration, about a third of water transpired over the whole growing season. This suggests that soil water in the entire root zone should be taken into consideration in irrigation scheduling, and for sensor-controlled irrigation systems sensors in the subsoil are essential for detecting soil water status for deep-rooted crops.

Flow injection spectrophotometry using natural reagent from Morinda citrifolia root for determination of aluminium in tea.

PubMed

Tontrong, Sopa; Khonyoung, Supada; Jakmunee, Jaroon

2012-05-01

A flow injection (FI) spectrophotometric method with using natural reagent extracted from Morinda citrifolia root has been developed for determination of aluminium. The extract contained anthraquinone compounds which could react with Al(3+) to form reddish complexes which had maximum absorption wavelength at 499.0nm. The extract could be used as a reagent in FI system without further purification to obtain pure compound. A sensitive method for determination of aluminium in concentration range of 0.1-1.0mgL(-1), with detection limit of 0.05mgL(-1) was achieved. Relative standard deviations of 1.2% and 1.7% were obtained for the determination of 0.1 and 0.6mgL(-1) Al(3+) (n=11). Sample throughput of 35h(-1) was achieved with the consumption of 3mL each of carrier and reagent solutions per injection. The developed method was successfully applied to tea samples, validated by the FAAS standard method. The method is simple, fast, economical and could be classified as a greener analytical method. Copyright © 2011 Elsevier Ltd. All rights reserved.

Diversity analysis of diazotrophic bacteria associated with the roots of tea (Camellia sinensis (L.) O. Kuntze).

PubMed

Gulati, Arvind; Sood, Swati; Rahi, Praveen; Thakur, Rishu; Chauhan, Sunita; Chawla, Isha

2011-06-01

The diversity elucidation by amplified ribosomal DNA restriction analysis and 16S rDNA sequencing of 96 associative diazotrophs, isolated from the feeder roots of tea on enriched nitrogen-free semisolid media, revealed the predominance of Gram-positive over Gram-negative bacteria within the Kangra valley in Himachal Pradesh, India. The Gram-positive bacteria observed belong to two taxonomic groupings; Firmicutes, including the genera Bacillus and Paenibacillus; and Actinobacteria, represented by the genus Microbacterium. The Gram-negative bacteria included alpha-Proteobacteria genera Brevundimonas, Rhizobium, and Mesorhizobium; gamma-Proteobacteria genera Pseudomonas and Stenotrophomonas; and beta-Proteobacteria genera Azospira, Burkholderia, Delftia, Herbaspirillum and Ralstonia. The low level of similarity of two isolates, with the type strains Paenibacillus xinjiangensis and Mesorhizobium albiziae, suggests the possibility of raising species novum. The bacterial strains of different phylogenetic groups exhibited distinct carbon-source utilization patterns and fatty acid methyl ester profiles. The strains differed in their nitrogenase activities with relatively high activity seen in the Gramnegative strains exhibiting the highest similarity to Azospira oryzae, Delftia lacustris and Herbaspirillum huttiense.

Burning management in the tallgrass prairie affects root decomposition, soil food web structure and carbon flow

NASA Astrophysics Data System (ADS)

Shaw, E. A.; Denef, K.; Milano de Tomasel, C.; Cotrufo, M. F.; Wall, D. H.

2015-09-01

Root litter decomposition is a major component of carbon (C) cycling in grasslands, where it provides energy and nutrients for soil microbes and fauna. This is especially important in grasslands where fire is a common management practice and removes aboveground litter accumulation. In this study, we investigated whether fire affects root decomposition and C flow through the belowground food web. In a greenhouse experiment, we applied 13C-enriched big bluestem (Andropogon gerardii) root litter to intact tallgrass prairie soil cores collected from annually burned (AB) and infrequently burned (IB) treatments at the Konza Prairie Long Term Ecological Research (LTER) site. Incorporation of 13C into microbial phospholipid fatty acids and nematode trophic groups was measured on six occasions during a 180-day decomposition study to determine how C was translocated through the soil food web. Results showed significantly different soil communities between treatments and higher microbial abundance for IB. Root decomposition occurred rapidly and was significantly greater for AB. Microbes and their nematode consumers immediately assimilated root litter C in both treatments. Root litter C was preferentially incorporated in a few groups of microbes and nematodes, but depended on burn treatment: fungi, Gram-negative bacteria, Gram-positive bacteria, and fungivore nematodes for AB and only omnivore nematodes for IB. The overall microbial pool of root litter-derived C significantly increased over time but was not significantly different between burn treatments. The nematode pool of root litter-derived C also significantly increased over time, and was significantly higher for the AB treatment at 35 and 90 days after litter addition. In conclusion, the C flow from root litter to microbes to nematodes is not only measurable, but significant, indicating that higher nematode trophic levels are critical components of C flow during root decomposition which, in turn, is significantly affected by fire management practices. Not only does fire affect the soil community and root decomposition for Konza Prairie LTER soils, but the lower microbial abundance, greater root turnover, and the increased incorporation of root litter C by microbes and nematodes for AB suggests that tallgrass prairie management through annual burning increases root litter-derived C flow through the soil food web.

Diurnal and seasonal variation in root xylem embolism in neotropical savanna woody species: impact on stomatal control of plant water status.

PubMed

Domec, J C; Scholz, F G; Bucci, S J; Meinzer, F C; Goldstein, G; Villalobos-Vega, R

2006-01-01

Vulnerability to water-stress-induced embolism and variation in the degree of native embolism were measured in lateral roots of four co-occurring neotropical savanna tree species. Root embolism varied diurnally and seasonally. Late in the dry season, loss of root xylem conductivity reached 80% in the afternoon when root water potential (psi root) was about -2.6 MPa, and recovered to 25-40% loss of conductivity in the morning when psi root was about -1.0 MPa. Daily variation in psi root decreased, and root xylem vulnerability and capacitance increased with rooting depth. However, all species experienced seasonal minimum psi root close to complete hydraulic failure independent of their rooting depth or resistance to embolism. Predawn psi root was lower than psi soil when psi soil was relatively high (> -0.7 MPa) but became less negative than psi soil, later in the dry season, consistent with a transition from a disequilibrium between plant and soil psi induced by nocturnal transpiration to one induced by hydraulic redistribution of water from deeper soil layers. Shallow longitudinal root incisions external to the xylem prevented reversal of embolism overnight, suggesting that root mechanical integrity was necessary for recovery, consistent with the hypothesis that if embolism is a function of tension, refilling may be a function of internal pressure imbalances. All species shared a common relationship in which maximum daily stomatal conductance declined linearly with increasing afternoon loss of root conductivity over the course of the dry season. Daily embolism and refilling in roots is a common occurrence and thus may be an inherent component of a hydraulic signaling mechanism enabling stomata to maintain the integrity of the hydraulic pipeline in long-lived structures such as stems.

Behavior of mercury in a soil-plant system as affected by inoculation with the arbuscular mycorrhizal fungus Glomus mosseae.

PubMed

Yu, Yang; Zhang, Shuzhen; Huang, Honglin

2010-08-01

Effects of inoculation with the arbuscular mycorrhizal (AM) fungus Glomus mosseae on the behavior of Hg in soil-plant system were investigated using an artificially contaminated soil at the concentrations of 0, 1.0, 2.0, and 4.0 mg Hg kg(-1). Mercury accumulation was lower in mycorrhizal roots than in nonmycorrhizal roots when Hg was added at the rates of 2.0 and 4.0 mg kg(-1), while no obvious difference in shoot Hg concentration was found between mycorrhizal and nonmycorrhizal treatments. Mycorrhizal inoculation significantly decreased the total and extractable Hg concentrations in soil as well as the ratio of extractable to total Hg in soil. Equilibration sorption of Hg by soil was investigated, and the results indicated that mycorrhizal treatment enhanced Hg sorption on soil. The uptake of Hg was lower by mycorrhizal roots than by nonmycorrhizal roots. These experiments provide further evidence for the role of mycorrhizal inoculation in increasing immobilization of Hg in soil and reducing the uptake of Hg by roots. Calculation on mass balance of Hg in soil suggests the presence of Hg loss from soil presumably through evaporation, and AM inoculation enhanced Hg evaporation. This was evidenced by a chamber study to detect the Hg evaporated from soil.

Temperature Effects on Biomass and Regeneration of Vegetation in a Geothermal Area

PubMed Central

Nishar, Abdul; Bader, Martin K.-F.; O’Gorman, Eoin J.; Deng, Jieyu; Breen, Barbara; Leuzinger, Sebastian

2017-01-01

Understanding the effects of increasing temperature is central in explaining the effects of climate change on vegetation. Here, we investigate how warming affects vegetation regeneration and root biomass and if there is an interactive effect of warming with other environmental variables. We also examine if geothermal warming effects on vegetation regeneration and root biomass can be used in climate change experiments. Monitoring plots were arranged in a grid across the study area to cover a range of soil temperatures. The plots were cleared of vegetation and root-free ingrowth cores were installed to assess above and below-ground regeneration rates. Temperature sensors were buried in the plots for continued soil temperature monitoring. Soil moisture, pH, and soil chemistry of the plots were also recorded. Data were analyzed using least absolute shrinkage and selection operator and linear regression to identify the environmental variable with the greatest influence on vegetation regeneration and root biomass. There was lower root biomass and slower vegetation regeneration in high temperature plots. Soil temperature was positively correlated with soil moisture and negatively correlated with soil pH. Iron and sulfate were present in the soil in the highest quantities compared to other measured soil chemicals and had a strong positive relationship with soil temperature. Our findings suggest that soil temperature had a major impact on root biomass and vegetation regeneration. In geothermal fields, vegetation establishment and growth can be restricted by low soil moisture, low soil pH, and an imbalance in soil chemistry. The correlation between soil moisture, pH, chemistry, and plant regeneration was chiefly driven by soil temperature. Soil temperature was negatively correlated to the distance from the geothermal features. Apart from characterizing plant regeneration on geothermal soils, this study further demonstrates a novel approach to global warming experiments, which could be particularly useful in low heat flow geothermal systems that more realistically mimic soil warming. PMID:28326088

Temperature Effects on Biomass and Regeneration of Vegetation in a Geothermal Area.

PubMed

Nishar, Abdul; Bader, Martin K-F; O'Gorman, Eoin J; Deng, Jieyu; Breen, Barbara; Leuzinger, Sebastian

2017-01-01

Understanding the effects of increasing temperature is central in explaining the effects of climate change on vegetation. Here, we investigate how warming affects vegetation regeneration and root biomass and if there is an interactive effect of warming with other environmental variables. We also examine if geothermal warming effects on vegetation regeneration and root biomass can be used in climate change experiments. Monitoring plots were arranged in a grid across the study area to cover a range of soil temperatures. The plots were cleared of vegetation and root-free ingrowth cores were installed to assess above and below-ground regeneration rates. Temperature sensors were buried in the plots for continued soil temperature monitoring. Soil moisture, pH, and soil chemistry of the plots were also recorded. Data were analyzed using least absolute shrinkage and selection operator and linear regression to identify the environmental variable with the greatest influence on vegetation regeneration and root biomass. There was lower root biomass and slower vegetation regeneration in high temperature plots. Soil temperature was positively correlated with soil moisture and negatively correlated with soil pH. Iron and sulfate were present in the soil in the highest quantities compared to other measured soil chemicals and had a strong positive relationship with soil temperature. Our findings suggest that soil temperature had a major impact on root biomass and vegetation regeneration. In geothermal fields, vegetation establishment and growth can be restricted by low soil moisture, low soil pH, and an imbalance in soil chemistry. The correlation between soil moisture, pH, chemistry, and plant regeneration was chiefly driven by soil temperature. Soil temperature was negatively correlated to the distance from the geothermal features. Apart from characterizing plant regeneration on geothermal soils, this study further demonstrates a novel approach to global warming experiments, which could be particularly useful in low heat flow geothermal systems that more realistically mimic soil warming.

[Effects of exogenous glucose and starch on soil carbon metabolism of root zone and root function in potted sweet cherry].

PubMed

Zhou, Wen-jie; Zhang, Peng; Qin, Si-jun; Lyu, De-guo

2015-11-01

One-year-old potted sweet cheery trees were treated with 4 g · kg(-1) exogenous glucose or starch and with non-addition of exogenous carbon as the control for up to 60 days. Soil of root zone was sampled to analyze soil microbial biomass carbon, activities of invertase and amylase and microbial community functional diversity during the 60-day treatment, and roots were sampled for analysis of root respiratory rate, respiratory pathways and root viability after treatment for 30 days. Results showed that the invertase activity and the microbial biomass carbon initially increased and decreased subsequently, with the maxima which were 14.0% and 13.1% higher in the glucose treatment than in the control treatment appeared after 15 and 7 days of treatments, respectively. Soil organic matter content increased first then decreased and finally moderately increased again. Amylase activity was 7.5-fold higher in the starch treatment than in the control treatment after 15-day treatment. Soil microbial biomass carbon was higher in the starch treatment than in the control treatment except after 7-day treatment. Soil organic matter content initially increased and then decreased, but it was still 19.8% higher than in the control after 60-day treatment. BIOLOG results showed that the maximum average well color development (AWCD) value and microbial activity appeared after 15-day treatment in the following order: starch>glucose>control. After 30-day treatment, glucose treatment resulted in a significant increase in the soil microbial utilization of carbohydrates, carboxylic acid, amino acids, phenolic acids and amines, and starch treatment significantly increased the soil microbial utilization of carbohydrates, carboxylic acid, polymers and phenolic acids. After 30-day treatment, the total root respiratory rate and root viability were 21.4%, 19.4% and 65.5%, 37.0% higher in glucose treatment than in the control and starch treatments, respectively. These results indicated exogenous glucose and starch affected soil carbon metabolism and enhanced soil microbial activity, the root respiratory rate and root viability.

Identifying the Active Microbiome Associated with Roots and Rhizosphere Soil of Oilseed Rape

PubMed Central

Mahmood, Shahid; Ekblad, Alf; Alström, Sadhna; Högberg, Nils; Finlay, Roger

2017-01-01

ABSTRACT RNA stable isotope probing and high-throughput sequencing were used to characterize the active microbiomes of bacteria and fungi colonizing the roots and rhizosphere soil of oilseed rape to identify taxa assimilating plant-derived carbon following 13CO2 labeling. Root- and rhizosphere soil-associated communities of both bacteria and fungi differed from each other, and there were highly significant differences between their DNA- and RNA-based community profiles. Verrucomicrobia, Proteobacteria, Planctomycetes, Acidobacteria, Gemmatimonadetes, Actinobacteria, and Chloroflexi were the most active bacterial phyla in the rhizosphere soil. Bacteroidetes were more active in roots. The most abundant bacterial genera were well represented in both the 13C- and 12C-RNA fractions, while the fungal taxa were more differentiated. Streptomyces, Rhizobium, and Flavobacterium were dominant in roots, whereas Rhodoplanes and Sphingomonas (Kaistobacter) were dominant in rhizosphere soil. “Candidatus Nitrososphaera” was enriched in 13C in rhizosphere soil. Olpidium and Dendryphion were abundant in the 12C-RNA fraction of roots; Clonostachys was abundant in both roots and rhizosphere soil and heavily 13C enriched. Cryptococcus was dominant in rhizosphere soil and less abundant, but was 13C enriched in roots. The patterns of colonization and C acquisition revealed in this study assist in identifying microbial taxa that may be superior competitors for plant-derived carbon in the rhizosphere of Brassica napus. IMPORTANCE This microbiome study characterizes the active bacteria and fungi colonizing the roots and rhizosphere soil of Brassica napus using high-throughput sequencing and RNA-stable isotope probing. It identifies taxa assimilating plant-derived carbon following 13CO2 labeling and compares these with other less active groups not incorporating a plant assimilate. Brassica napus is an economically and globally important oilseed crop, cultivated for edible oil, biofuel production, and phytoextraction of heavy metals; however, it is susceptible to several diseases. The identification of the fungal and bacterial species successfully competing for plant-derived carbon, enabling them to colonize the roots and rhizosphere soil of this plant, should enable the identification of microorganisms that can be evaluated in more detailed functional studies and ultimately be used to improve plant health and productivity in sustainable agriculture. PMID:28887416

Identifying the Active Microbiome Associated with Roots and Rhizosphere Soil of Oilseed Rape.

PubMed

Gkarmiri, Konstantia; Mahmood, Shahid; Ekblad, Alf; Alström, Sadhna; Högberg, Nils; Finlay, Roger

2017-11-15

RNA stable isotope probing and high-throughput sequencing were used to characterize the active microbiomes of bacteria and fungi colonizing the roots and rhizosphere soil of oilseed rape to identify taxa assimilating plant-derived carbon following 13 CO 2 labeling. Root- and rhizosphere soil-associated communities of both bacteria and fungi differed from each other, and there were highly significant differences between their DNA- and RNA-based community profiles. Verrucomicrobia , Proteobacteria , Planctomycetes , Acidobacteria , Gemmatimonadetes , Actinobacteria , and Chloroflexi were the most active bacterial phyla in the rhizosphere soil. Bacteroidetes were more active in roots. The most abundant bacterial genera were well represented in both the 13 C- and 12 C-RNA fractions, while the fungal taxa were more differentiated. Streptomyces , Rhizobium , and Flavobacterium were dominant in roots, whereas Rhodoplanes and Sphingomonas ( Kaistobacter ) were dominant in rhizosphere soil. " Candidatus Nitrososphaera" was enriched in 13 C in rhizosphere soil. Olpidium and Dendryphion were abundant in the 12 C-RNA fraction of roots; Clonostachys was abundant in both roots and rhizosphere soil and heavily 13 C enriched. Cryptococcus was dominant in rhizosphere soil and less abundant, but was 13 C enriched in roots. The patterns of colonization and C acquisition revealed in this study assist in identifying microbial taxa that may be superior competitors for plant-derived carbon in the rhizosphere of Brassica napus IMPORTANCE This microbiome study characterizes the active bacteria and fungi colonizing the roots and rhizosphere soil of Brassica napus using high-throughput sequencing and RNA-stable isotope probing. It identifies taxa assimilating plant-derived carbon following 13 CO 2 labeling and compares these with other less active groups not incorporating a plant assimilate. Brassica napus is an economically and globally important oilseed crop, cultivated for edible oil, biofuel production, and phytoextraction of heavy metals; however, it is susceptible to several diseases. The identification of the fungal and bacterial species successfully competing for plant-derived carbon, enabling them to colonize the roots and rhizosphere soil of this plant, should enable the identification of microorganisms that can be evaluated in more detailed functional studies and ultimately be used to improve plant health and productivity in sustainable agriculture. Copyright © 2017 American Society for Microbiology.

Fire affects root decomposition, soil food web structure, and carbon flow in tallgrass prairie

NASA Astrophysics Data System (ADS)

Shaw, E. Ashley; Denef, Karolien; Milano de Tomasel, Cecilia; Cotrufo, M. Francesca; Wall, Diana H.

2016-05-01

Root litter decomposition is a major component of carbon (C) cycling in grasslands, where it provides energy and nutrients for soil microbes and fauna. This is especially important in grasslands where fire is common and removes aboveground litter accumulation. In this study, we investigated whether fire affects root decomposition and C flow through the belowground food web. In a greenhouse experiment, we applied 13C-enriched big bluestem (Andropogon gerardii) root litter to intact tallgrass prairie soil cores collected from annually burned (AB) and infrequently burned (IB) treatments at the Konza Prairie Long Term Ecological Research (LTER) site. Incorporation of 13C into microbial phospholipid fatty acids and nematode trophic groups was measured on six occasions during a 180-day decomposition study to determine how C was translocated through the soil food web. Results showed significantly different soil communities between treatments and higher microbial abundance for IB. Root decomposition occurred rapidly and was significantly greater for AB. Microbes and their nematode consumers immediately assimilated root litter C in both treatments. Root litter C was preferentially incorporated in a few groups of microbes and nematodes, but depended on burn treatment: fungi, Gram-negative bacteria, Gram-positive bacteria, and fungivore nematodes for AB and only omnivore nematodes for IB. The overall microbial pool of root-litter-derived C significantly increased over time but was not significantly different between burn treatments. The nematode pool of root-litter-derived C also significantly increased over time, and was significantly higher for the AB treatment at 35 and 90 days after litter addition. In conclusion, the C flow from root litter to microbes to nematodes is not only measurable but also significant, indicating that higher nematode trophic levels are critical components of C flow during root decomposition, which, in turn, is significantly affected by fire. Not only does fire affect the soil community and root decomposition, but the lower microbial abundance, greater root turnover, and the increased incorporation of root litter C by microbes and nematodes for AB suggests that annual burning increases root-litter-derived C flow through the soil food web of the tallgrass prairie.

A review of tree root conflicts with sidewalks, curbs, and roads

Treesearch

T.B. Randrup; E.G. McPherson; L.R. Costello

2003-01-01

Literature relevant to tree root and urban infrastructure conflicts is reviewed. Although tree roots can conflict with many infrastructure elements, sidewalk and curb conflicts are the focus of this review. Construction protocols, urban soils, root growth, and causal factors (soil conditions, limited planting space, tree size, variation in root architecture, management...

Enhanced root exudation stimulates soil nitrogen transformations in a subalpine coniferous forest under experimental warming.

PubMed

Yin, Huajun; Li, Yufei; Xiao, Juan; Xu, Zhenfeng; Cheng, Xinyin; Liu, Qing

2013-07-01

Despite the perceived importance of exudation to forest ecosystem function, few studies have attempted to examine the effects of elevated temperature and nutrition availability on the rates of root exudation and associated microbial processes. In this study, we performed an experiment in which in situ exudates were collected from Picea asperata seedlings that were transplanted in disturbed soils exposed to two levels of temperature (ambient temperature and infrared heater warming) and two nitrogen levels (unfertilized and 25 g N m(-2)  a(-1) ). Here, we show that the trees exposed to an elevated temperature increased their exudation rates I (μg C g(-1) root biomass h(-1) ), II (μg C cm(-1)  root length h(-1) ) and III (μg C cm(-2)  root area h(-1) ) in the unfertilized plots. The altered morphological and physiological traits of the roots exposed to experimental warming could be responsible for this variation in root exudation. Moreover, these increases in root-derived C were positively correlated with the microbial release of extracellular enzymes involved in the breakdown of organic N (R(2)  = 0.790; P = 0.038), which was coupled with stimulated microbial activity and accelerated N transformations in the unfertilized soils. In contrast, the trees exposed to both experimental warming and N fertilization did not show increased exudation rates or soil enzyme activity, indicating that the stimulatory effects of experimental warming on root exudation depend on soil fertility. Collectively, our results provide preliminary evidence that an increase in the release of root exudates into the soil may be an important physiological adjustment by which the sustained growth responses of plants to experimental warming may be maintained via enhanced soil microbial activity and soil N transformation. Accordingly, the underlying mechanisms by which plant root-microbe interactions influence soil organic matter decomposition and N cycling should be incorporated into climate-carbon cycle models to determine reliable estimates of long-term C storage in forests. © 2013 Blackwell Publishing Ltd.

How does vineyard management intensity affect inter-row plant diversity and associated root parameters

NASA Astrophysics Data System (ADS)

Winter, Silvia; Labuda, Thomas; Probus, Sandra; Penke, Nicole; Himmelbauer, Margarita; Loiskandl, Willibald; Strauss, Peter; Bauer, Thomas; Popescu, Daniela; Comsa, Maria; Bunea, Claudiu-Ioan; Zaller, Johann G.; Kriechbaum, Monika

2017-04-01

Vineyard management has changed dramatically in the last 50 years. In many wine-growing regions, vineyard inter-rows are kept clean of vegetation by frequent tillage or use of herbicides to establish bare soil systems. In the last thirty years, policy-makers and several winegrowers have realized that temporary or permanent vegetation cover between the vine rows may increase ecosystem services like soil erosion mitigation, soil fertility and biodiversity conservation. The inter-row area of a vineyard can host a diverse flora providing habitat and food resources for pollinating insects and natural enemies of pests. The goal of this study was to analyze the influence of different soil management intensities on plant diversity and root parameters in the vineyard inter-rows. We investigated 15 vineyards in Romania and 14 in Austria to study the effects of three different management intensities on plant diversity, above and below-ground plant biomass, total root length and surface area of roots. Management intensity ranged from bare soil inter-rows to alternative soil tillage every second year to permanent vegetation cover for more than five years. In each vineyard inter-row, six soil samples (7 cm diameter and 10 cm height) of the upper soil layer were extracted for root analyses. Root were separated from the soil, stained and finally scanned and analyzed with the WinRHIZO software. Finally, roots were dried at 70°C to obtain dry matter of the root samples. Vegetation cover and vascular plant diversity was recorded in four 1 m2 plots within each vineyard inter-row two times a year. The most intensive bare soil management regime in Romania significantly reduced root biomass, total root length and surface area in comparison to the alternative and permanent vegetation cover management. Plant biodiversity was also reduced by intensive management, but differences were not significant. While alternative tillage every second year showed the highest values of plant species diversity and functional richness, total root length, surface area and root biomass always showed the highest value in the vineyards with permanent vegetation cover. In Austria, the difference between temporary and permanent vegetation cover was much less pronounced than in Romania. The overall synthesis of these results combined with additional biodiversity datasets and soil parameters gathered within the transdisciplinary BiodivERsA project VineDivers will be used to draft management and policy recommendations for various stakeholder groups engaged in viticulture.

Plasticity in nodal root elongation through the hardpan triggered by rewatering during soil moisture fluctuation stress in rice.

PubMed

Suralta, Roel Rodriguez; Niones, Jonathan Manito; Kano-Nakata, Mana; Thi Tran, Thiem; Mitsuya, Shiro; Yamauchi, Akira

2018-03-12

Rainfed lowland (RFL) rice fields have hardpans and experience soil moisture fluctuations (SMF) stress, which influence root system development. Here, we clarify the expression and timing of the plasticity in nodal root elongation through the hardpan under SMF and its contribution to shoot growth using a shallow-rooting IR64 and its deep-rooting introgression line, YTH304. Under SMF, soil moisture content had negative relationship with soil penetration resistance, regardless of hardpan bulk densities. YTH304 had greater root system below the hardpan than IR64 in hardpan with 1.50 but not in 1.70 g cm -3 bulk density (BD). YTH304 had greater plasticity in nodal root elongation through the hardpan than IR64 under SMF, which was clearly expressed during rewatering. YTH304 also had greater soil water uptake below the hardpan during drought and greater shoot growth than IR64. The results imply that deep root system development during SMF was due to the plasticity in nodal root elongation through the hardpan expressed during rewatering rather than during drought periods. This is against the long standing belief that active root elongation through the hardpan happens during drought. This also implies a need to revisit current root screening methods to identify rice lines with good hardpan penetration ability.

Estimation of runoff mitigation by morphologically different cover crop root systems

NASA Astrophysics Data System (ADS)

Yu, Yang; Loiskandl, Willibald; Kaul, Hans-Peter; Himmelbauer, Margarita; Wei, Wei; Chen, Liding; Bodner, Gernot

2016-07-01

Hydrology is a major driver of biogeochemical processes underlying the distinct productivity of different biomes, including agricultural plantations. Understanding factors governing water fluxes in soil is therefore a key target for hydrological management. Our aim was to investigate changes in soil hydraulic conductivity driven by morphologically different root systems of cover crops and their impact on surface runoff. Root systems of twelve cover crop species were characterized and the corresponding hydraulic conductivity was measured by tension infiltrometry. Relations of root traits to Gardner's hydraulic conductivity function were determined and the impact on surface runoff was estimated using HYDRUS 2D. The species differed in both rooting density and root axes thickness, with legumes distinguished by coarser axes. Soil hydraulic conductivity was changed particularly in the plant row where roots are concentrated. Specific root length and median root radius were the best predictors for hydraulic conductivity changes. For an intensive rainfall simulation scenario up to 17% less rainfall was lost by surface runoff in case of the coarsely rooted legumes Melilotus officinalis and Lathyrus sativus, and the densely rooted Linum usitatissimum. Cover crops with coarse root axes and high rooting density enhance soil hydraulic conductivity and effectively reduce surface runoff. An appropriate functional root description can contribute to targeted cover crop selection for efficient runoff mitigation.

Bacterial microbiomes of individual ectomycorrhizal Pinus sylvestris roots are shaped by soil horizon and differentially sensitive to nitrogen addition.

PubMed

Marupakula, Srisailam; Mahmood, Shahid; Jernberg, Johanna; Nallanchakravarthula, Srivathsa; Fahad, Zaenab A; Finlay, Roger D

2017-11-01

Plant roots select non-random communities of fungi and bacteria from the surrounding soil that have effects on their health and growth, but we know little about the factors influencing their composition. We profiled bacterial microbiomes associated with individual ectomycorrhizal Pinus sylvestris roots colonized by different fungi and analyzed differences in microbiome structure related to soils from distinct podzol horizons and effects of short-term additions of N, a growth-limiting nutrient commonly applied as a fertilizer, but known to influence patterns of carbon allocation to roots. Ectomycorrhizal roots growing in soil from different horizons harboured distinct bacterial communities. The fungi colonizing individual roots had a strong effect on the associated bacterial communities. Even closely related species within the same ectomycorrhizal genus had distinct bacterial microbiomes in unfertilized soil, but fertilization removed this specificity. Effects of N were rapid and context dependent, being influenced by both soil type and the particular ectomycorrhizal fungi involved. Fungal community composition changed in soil from all horizons, but bacteria only responded strongly to N in soil from the B horizon where community structure was different and bacterial diversity was significantly reduced, possibly reflecting changed carbon allocation patterns. © 2017 Society for Applied Microbiology and John Wiley & Sons Ltd.

Microbial Growth and Carbon Use Efficiency in the Rhizosphere and Root-Free Soil

PubMed Central

Blagodatskaya, Evgenia; Blagodatsky, Sergey; Anderson, Traute-Heidi; Kuzyakov, Yakov

2014-01-01

Plant-microbial interactions alter C and N balance in the rhizosphere and affect the microbial carbon use efficiency (CUE)–the fundamental characteristic of microbial metabolism. Estimation of CUE in microbial hotspots with high dynamics of activity and changes of microbial physiological state from dormancy to activity is a challenge in soil microbiology. We analyzed respiratory activity, microbial DNA content and CUE by manipulation the C and nutrients availability in the soil under Beta vulgaris. All measurements were done in root-free and rhizosphere soil under steady-state conditions and during microbial growth induced by addition of glucose. Microorganisms in the rhizosphere and root-free soil differed in their CUE dynamics due to varying time delays between respiration burst and DNA increase. Constant CUE in an exponentially-growing microbial community in rhizosphere demonstrated the balanced growth. In contrast, the CUE in the root-free soil increased more than three times at the end of exponential growth and was 1.5 times higher than in the rhizosphere. Plants alter the dynamics of microbial CUE by balancing the catabolic and anabolic processes, which were decoupled in the root-free soil. The effects of N and C availability on CUE in rhizosphere and root-free soil are discussed. PMID:24722409

[Root anatomical structure and hydraulic traits of three typical shrubs on the sandy lands of northern Shaanxi Province, China].

PubMed

Ai, Shao-shui; Li, Yang-yang; Chen, Jia-cun; Chen, Wei-yue

2015-11-01

Root xylem anatomical structure and hydraulic traits of three typical shrubs, i.e., Salix psammophila, Caragana korshinskii and Hippophae rhamnoides, within two soil layers (0-20 cm and 30-50 cm) were compared. The results showed that S. psammophila had a higher leaf water potential than C. korshinskii and H. rhamnoides, the average maximum and minimum lumen diameter (d(max) and d(min), respectively), the average lumen area of vessels (Alum) and the ratio of lumen area of all vessels to xylem area (Aves/Axyl) in S. psammophila roots were also significantly higher than those in C. korshinskii and H. rhamnoides, and the root vessel density (VD) in S. psammophila was the same as that in H. rhamnoides but significantly higher than that in C. korshinskii. Root hydraulic conductivity in S. psammophila was 5 times of C. korshinskii and 2.8 times of H. hamnoides. The vulnerability index in S. psammophila roots was similar to that in C. korshinskii but higher than that in H. hamnoides. S. psammophila belonged to a water-spending species, whereas both C. korshinskii and H. rhamnoides were water-saving species, and C. korshinskii was more drought-resistant than H. rhamnoides. There was no difference of d(max), d(min) and Alum between roots in two soil layers, but roots within in the 30-50 cm soil layer had larger VD and Aves/Axyl. The root specific hydraulic conductivity within the 30-50 cm soil layer was significantly higher than within the surface soil layer, whereas the vulnerability index within the 30-50 cm soil layer was smaller, indicating roots in deep soil layers had higher hydraulic transport efficiency and lower hydraulic vulnerability.

Rhizosphere hydrophobicity: A positive trait in the competition for water.

PubMed

Zeppenfeld, Thorsten; Balkenhol, Niko; Kóvacs, Kristóf; Carminati, Andrea

2017-01-01

The ability to acquire water from the soil is a major driver in interspecific plant competition and it depends on several root functional traits. One of these traits is the excretion of gel-like compounds (mucilage) that modify physical soil properties. Mucilage secreted by roots becomes hydrophobic upon drying, impedes the rewetting of the soil close to the root, the so called rhizosphere, and reduces water availability to plants. The function of rhizosphere hydrophobicity is not easily understandable when looking at a single plant, but it may constitute a competitive advantage at the ecosystem level. We hypothesize that by making the top soil hydrophobic, deep-rooted plants avoid competititon with shallow-rooted plants. To test this hypothesis we used an individual-based model to simulate water uptake and growth of two virtual plant species, one deep-rooted plant capable of making the soil hydrophobic and a shallow-rooted plant. We ran scenarios with different precipitation regimes ranging from dry to wet (350, 700, and 1400 mm total annual precipitation) and from high to low precipitation frequencies (1, 7, and 14 days). Plant species abundance and biomass were chosen as indicators for competitiveness of plant species. At constant precipitation frequency mucilage hydrophobicity lead to a benefit in biomass and abundance of the tap-rooted population. Under wet conditions this effect diminished and tap-rooted plants were less productive. Without this trait both species coexisted. The effect of root exudation trait remained constant under different precipitation frequencies. This study shows that mucilage secretion is a competitive trait for the acquisition of water. This advantage is achieved by the modification of the soil hydraulic properties and specifically by inducing water repellency in soil regions which are shared with other species.

Rhizosphere hydrophobicity: A positive trait in the competition for water

PubMed Central

Balkenhol, Niko; Kóvacs, Kristóf; Carminati, Andrea

2017-01-01

The ability to acquire water from the soil is a major driver in interspecific plant competition and it depends on several root functional traits. One of these traits is the excretion of gel-like compounds (mucilage) that modify physical soil properties. Mucilage secreted by roots becomes hydrophobic upon drying, impedes the rewetting of the soil close to the root, the so called rhizosphere, and reduces water availability to plants. The function of rhizosphere hydrophobicity is not easily understandable when looking at a single plant, but it may constitute a competitive advantage at the ecosystem level. We hypothesize that by making the top soil hydrophobic, deep-rooted plants avoid competititon with shallow-rooted plants. To test this hypothesis we used an individual-based model to simulate water uptake and growth of two virtual plant species, one deep-rooted plant capable of making the soil hydrophobic and a shallow-rooted plant. We ran scenarios with different precipitation regimes ranging from dry to wet (350, 700, and 1400 mm total annual precipitation) and from high to low precipitation frequencies (1, 7, and 14 days). Plant species abundance and biomass were chosen as indicators for competitiveness of plant species. At constant precipitation frequency mucilage hydrophobicity lead to a benefit in biomass and abundance of the tap-rooted population. Under wet conditions this effect diminished and tap-rooted plants were less productive. Without this trait both species coexisted. The effect of root exudation trait remained constant under different precipitation frequencies. This study shows that mucilage secretion is a competitive trait for the acquisition of water. This advantage is achieved by the modification of the soil hydraulic properties and specifically by inducing water repellency in soil regions which are shared with other species. PMID:28753673

Soil properties and root biomass responses to prescribed burning in young Corsican pine (Pinus nigra Arn.) stands.

PubMed

Tufekcioglu, Aydin; Kucuk, Mehmet; Saglam, Bulent; Bilgili, Ertugrul; Altun, Lokman

2010-05-01

Fire is an important tool in the management of forest ecosystems. Although both prescribed and wildland fires are common in Turkey, few studies have addressed the influence of such disturbances on soil properties and root biomass dynamics. In this study, soil properties and root biomass responses to prescribed fire were investigated in 25-year-old corsican pine (Pinus nigra Arn.) stands in Kastamonu, Turkey. The stands were established by planting and were subjected to prescribed burning in July 2003. Soil respiration rates were determined every two months using soda-lime method over a two-year period. Fine (0-2 mm diameter) and small root (2-5 mm diameter) biomass were sampled approximately bimonthly using sequential coring method. Mean daily soil respiration ranged from 0.65 to 2.19 g Cm(-2) d(-1) among all sites. Soil respiration rates were significantly higher in burned sites than in controls. Soil respiration rates were correlated significantly with soil moisture and soil temperature. Fine root biomass was significantly lower in burned sites than in control sites. Mean fine root biomass values were 4940 kg ha(-1) for burned and 5450 kg ha(-1) for control sites. Soil pH was significantly higher in burned sites than in control sites in 15-35 cm soil depth. Soil organic matter content did not differ significantly between control and burned sites. Our results indicate that, depending on site conditions, fire could be used successfully as a tool in the management of forest stands in the study area.

Use of small scale electrical resistivity tomography to identify soil-root interactions during deficit irrigation

NASA Astrophysics Data System (ADS)

Vanella, D.; Cassiani, G.; Busato, L.; Boaga, J.; Barbagallo, S.; Binley, A.; Consoli, S.

2018-01-01

Plant roots activity affect the exchanges of mass and energy between the soil and atmosphere. However, it is challenging to monitor the activity of the root-zone because roots are not visible from the soil surface, and root systems undergo spatial and temporal variations in response to internal and external conditions. Therefore, measurements of the activity of root systems are interesting to ecohydrologists in general, and are especially important for specific applications, such as irrigation water management. This study demonstrates the use of small scale three-dimensional (3-D) electrical resistivity tomography (ERT) to monitor the root-zone of orange trees irrigated by two different regimes: (i) full rate, in which 100% of the crop evapotranspiration (ETc) is provided; and (ii) partial root-zone drying (PRD), in which 50% of ETc is supplied to alternate sides of the tree. We performed time-lapse 3-D ERT measurements on these trees from 5 June to 24 September 2015, and compared the long-term and short-term changes before, during, and after irrigation events. Given the small changes in soil temperature and pore water electrical conductivity, we interpreted changes of soil electrical resistivity from 3-D ERT data as proxies for changes in soil water content. The ERT results are consistent with measurements of transpiration flux and soil temperature. The changes in electrical resistivity obtained from ERT measurements in this case study indicate that root water uptake (RWU) processes occur at the 0.1 m scale, and highlight the impact of different irrigation schemes.

Simultaneous effects of leaf irradiance and soil moisture on growth and root system architecture of novel wheat genotypes: implications for phenotyping.

PubMed

Nagel, Kerstin A; Bonnett, David; Furbank, Robert; Walter, Achim; Schurr, Ulrich; Watt, Michelle

2015-09-01

Plants in the field are exposed to varying light and moisture. Agronomic improvement requires knowledge of whole-plant phenotypes expressed in response to simultaneous variation in these essential resources. Most phenotypes, however, have been described from experiments where resources are varied singularly. To test the importance of varying shoot and root resources for phenotyping studies, sister pre-breeding lines of wheat were phenotyped in response to independent or simultaneous exposure to two light levels and soil moisture profiles. The distribution and architecture of the root systems depended strongly on the moisture of the deeper soil layer. For one genotype, roots, specifically lateral roots, were stimulated to grow into moist soil when the upper zone was well-watered and were inhibited by drier deep zones. In contrast, the other genotype showed much less plasticity and responsiveness to upper moist soil, but maintained deeper penetration of roots into the dry layer. The sum of shoot and root responses was greater when treated simultaneously to low light and low soil water, compared to each treatment alone, suggesting the value of whole plant phenotyping in response to multiple conditions for agronomic improvement. The results suggest that canopy management for increased irradiation of leaves would encourage root growth into deeper drier soil, and that genetic variation within closely related breeding lines may exist to favour surface root growth in response to irrigation or in-season rainfall. © The Author 2015. Published by Oxford University Press on behalf of the Society for Experimental Biology.

Modeling Water and Nutrient Transport through the Soil-Root-Canopy Continuum: Explicitly Linking the Below- and Above-Ground Processes

NASA Astrophysics Data System (ADS)

Kumar, P.; Quijano, J. C.; Drewry, D.

2010-12-01

Vegetation roots provide a fundamental link between the below ground water and nutrient dynamics and above ground canopy processes such as photosynthesis, evapotranspiration and energy balance. The “hydraulic architecture” of roots, consisting of the structural organization of the root system and the flow properties of the conduits (xylem) as well as interfaces with the soil and the above ground canopy, affect stomatal conductance thereby directly linking them to the transpiration. Roots serve as preferential pathways for the movement of moisture from wet to dry soil layers during the night, both from upper soil layer to deeper layers during the wet season (‘hydraulic descent’) and vice-versa (‘hydraulic lift’) as determined by the moisture gradients. The conductivities of transport through the root system are significantly, often orders of magnitude, larger than that of the surrounding soil resulting in movement of soil-moisture at rates that are substantially larger than that through the soil. This phenomenon is called hydraulic redistribution (HR). The ability of the deep-rooted vegetation to “bank” the water through hydraulic descent during wet periods for utilization during dry periods provides them with a competitive advantage. However, during periods of hydraulic lift these deep-rooted trees may facilitate the growth of understory vegetation where the understory scavenges the hydraulically lifted soil water. In other words, understory vegetation with relatively shallow root systems have access to the banked deep-water reservoir. These inter-dependent root systems have a significant influence on water cycle and ecosystem productivity. HR induced available moisture may support rhizosphere microbial and mycorrhizal fungi activities and enable utilization of heterogeneously distributed water and nutrient resources To capture this complex inter-dependent nutrient and water transport through the soil-root-canopy continuum we present modeling results using coupled partial differential equations of transport in soils and roots along with that for nutrient dynamics. We study the feedbkack of HR on the dynamics of water and nitrogen cycling in the soil and how these dynamics influence root water and nitrogen uptake and consequently carbon assimilation by the canopy. The forcing data is obtained from the Ameriflux Tower located in Blodgett Forest, Sierra Nevada, California. We consider single-species (Ponderosa Pine) and multi-species (overstory Ponderosa Pine and understory shrubs) interaction. When single species is considered, the near surface soil-moisture available from HR during dry summer season is an important source of evaporation and contributes significantly to the total ET flux. However, when multi-species interactions are taken into account, the soil-water from the HR becomes an important source of transpiration from the understory. The results also show that passive plant nitrogen uptake is higher when HR is present and it is critical for sustaining expected rates of carbon assimilation.

Localization of 15N uptake in a Tibetan alpine Kobresia pasture

NASA Astrophysics Data System (ADS)

Schleuß, Per-Marten; Kuzyakov, Yakov

2014-05-01

The Kobresia Pygmea ecotone covers approximately 450.000 km2 and is of large global and regional importance due several socio-ecological aspects. For instance Kobresia pastures store high amounts of carbon, nitrogen and other nutrients, represent large grazing areas for herbivores, provide a fast regrowth after grazing events and protect against mechanical degradation and soil erosion. However, Kobresia pastures are assumed to be a grazing induced and are accompanied with distinct root mats varying in thickness between 5-30 cm. Yet, less is known about the morphology and the functions of this root mats, especially in the background of a progressing degradation due to changes of climate and management. Thus we aimed to identify the importance of single soil layers for plant nutrition. Accordingly, nitrogen uptake from different soil depths and its remain in above-ground biomass (AGB), belowground biomass (BGB) and soil were determined by using a 15N pulse labeling approach during the vegetation period in summer 2012. 15N urea was injected into six different soil depths (0.5 cm, 2.5 cm, 7.5 cm, 12.5 cm, 17.5 cm, 22.5 cm / for each 4 replicates) and plots were sampled 45 days after the labeling. For soil and BGB samples were taken in strict sample intervals of 0-1 cm, 1-5 cm, 5-10 cm, 10-15 cm, 15-20 cm, 20-25 cm. Results indicate that total recovery (including AGB, BGB and soil) was highest, if tracer was injected into the top 5 cm and subsequently decreased with decreasing injection depth. This is especially the case for the 15N recovery of BGB, which is clearly attributed to the root density and strongly decreased with soil depth. In contrast, the root activity derived from the 15N content of roots increased with soil depth, which is primary associated to a proportionate increase of living roots related to dead roots. However, most 15N was captured in plant biomass (67.5-85.3 % of total recovery), indicating high 15N uptake efficiency possibly due to N limitation of Kobresia ecosystems. Considering only the nitrogen uptake of AGB hardly any differences appeared between the six injection depths. Nevertheless, it could be shown, that 50.4 % percent of total variance of AGB nitrogen uptake could be explained by combining root density and root activity. Concluding, from the upper root mat horizons highest amounts of nitrogen were taken up by plants, because root densities are correspondingly high. However, in deeper root mat layers the root activity increases and accordingly plays a key role for plant nitrogen supply in this depth. Underlying causes for increasing root activities may be better soil moisture conditions, lower variation of soil temperature and/or a higher access to plant available nitrogen in deeper soil layers.Please fill in your abstract text.

Modelling Water Uptake Provides a New Perspective on Grass and Tree Coexistence

PubMed Central

2015-01-01

Root biomass distributions have long been used to infer patterns of resource uptake. These patterns are used to understand plant growth, plant coexistence and water budgets. Root biomass, however, may be a poor indicator of resource uptake because large roots typically do not absorb water, fine roots do not absorb water from dry soils and roots of different species can be difficult to differentiate. In a sub-tropical savanna, Kruger Park, South Africa, we used a hydrologic tracer experiment to describe the abundance of active grass and tree roots across the soil profile. We then used this tracer data to parameterize a water movement model (Hydrus 1D). The model accounted for water availability and estimated grass and tree water uptake by depth over a growing season. Most root biomass was found in shallow soils (0–20 cm) and tracer data revealed that, within these shallow depths, half of active grass roots were in the top 12 cm while half of active tree roots were in the top 21 cm. However, because shallow soils provided roots with less water than deep soils (20–90 cm), the water movement model indicated that grass and tree water uptake was twice as deep as would be predicted from root biomass or tracer data alone: half of grass and tree water uptake occurred in the top 23 and 43 cm, respectively. Niche partitioning was also greater when estimated from water uptake rather than tracer uptake. Contrary to long-standing assumptions, shallow grass root distributions absorbed 32% less water than slightly deeper tree root distributions when grasses and trees were assumed to have equal water demands. Quantifying water uptake revealed deeper soil water uptake, greater niche partitioning and greater benefits of deep roots than would be estimated from root biomass or tracer uptake data alone. PMID:26633177

Influence of Root Exudates and Soil on Attachment of Pasteuria penetrans to Meloidogyne arenaria

PubMed Central

Liu, Chang; Ji, Pingsheng; Mekete, Tesfamariam; Joseph, Soumi

2017-01-01

The bacterium Pasteuria penetrans is a parasite of root-knot nematodes (Meloidogyne spp.). Endospores of P. penetrans attach to the cuticle of second-stage juveniles (J2) and subsequently sterilize infected females. When encumbered by large numbers of spores, juveniles are less mobile and their ability to infect roots is reduced. This study looked at different factors that influence spore attachment of P. penetrans to the root-knot nematode Meloidogyne arenaria. Pretreatment of J2 with root exudates of eggplant (Solanum melongena cv. Black beauty) reduced spore attachment compared with pretreatment with phosphate-buffered saline (PBS), suggesting that the nematode surface coat was altered or the spore recognition domains on the nematode surface were blocked. Spore attachment was equally reduced following exposure to root exudates from both host and nonhost plants for M. arenaria, indicating a common signal that affects spore attachment. Although phytohormones have been shown to influence the lipophilicity of the nematode surface coat, auxins and kinetins did not affect spore attachment compared with PBS. Root exudates reduced spore attachment more in sterilized soil than in natural soil. Sterilization may have eliminated microbes that consume root exudates, or altered the chemical components of the soil solution or root exudates. Root exudates caused a greater decrease in spore attachment in loamy sand than in a sandy loam soil. The sandy loam had higher clay content than the loamy sand, which may have resulted in more adsorption of compounds in the root exudates that affect spore attachment. The components of the root exudates could have also been modified by soil type. The results of this study demonstrate that root exudates can decrease the attachment of P. penetrans endospores to root-knot nematodes, indicating that when these nematodes enter the root zone their susceptibility to spore attachment may decrease. PMID:29062153

Influence of Root Exudates and Soil on Attachment of Pasteuria penetrans to Meloidogyne arenaria.

PubMed

Liu, Chang; Timper, Patricia; Ji, Pingsheng; Mekete, Tesfamariam; Joseph, Soumi

2017-09-01

The bacterium Pasteuria penetrans is a parasite of root-knot nematodes ( Meloidogyne spp.). Endospores of P. penetrans attach to the cuticle of second-stage juveniles (J2) and subsequently sterilize infected females. When encumbered by large numbers of spores, juveniles are less mobile and their ability to infect roots is reduced. This study looked at different factors that influence spore attachment of P. penetrans to the root-knot nematode Meloidogyne arenaria . Pretreatment of J2 with root exudates of eggplant ( Solanum melongena cv. Black beauty) reduced spore attachment compared with pretreatment with phosphate-buffered saline (PBS), suggesting that the nematode surface coat was altered or the spore recognition domains on the nematode surface were blocked. Spore attachment was equally reduced following exposure to root exudates from both host and nonhost plants for M. arenaria , indicating a common signal that affects spore attachment. Although phytohormones have been shown to influence the lipophilicity of the nematode surface coat, auxins and kinetins did not affect spore attachment compared with PBS. Root exudates reduced spore attachment more in sterilized soil than in natural soil. Sterilization may have eliminated microbes that consume root exudates, or altered the chemical components of the soil solution or root exudates. Root exudates caused a greater decrease in spore attachment in loamy sand than in a sandy loam soil. The sandy loam had higher clay content than the loamy sand, which may have resulted in more adsorption of compounds in the root exudates that affect spore attachment. The components of the root exudates could have also been modified by soil type. The results of this study demonstrate that root exudates can decrease the attachment of P. penetrans endospores to root-knot nematodes, indicating that when these nematodes enter the root zone their susceptibility to spore attachment may decrease.

Warming and elevated CO 2 alter the suberin chemistry in roots of photosynthetically divergent grass species

DOE PAGES

Suseela, Vidya; Tharayil, Nishanth; Pendall, Elise; ...

2017-09-01

A majority of soil carbon (C) is either directly or indirectly derived from fine roots, yet roots remain the least understood component of the terrestrial carbon cycle. The decomposability of fine roots and their potential to contribute to soil C is partly regulated by their tissue chemical composition. Roots rely heavily on heteropolymers such as suberins, lignins and tannins to adapt to various environmental pressures and to maximize their resource uptake functions. Since the chemical construction of roots is partly shaped by their immediate biotic/abiotic soil environments, global changes that perturb soil resource availability and plant growth could potentially altermore » root chemistry, and hence the decomposability of roots. However, the effect of global change on the quantity and composition of root heteropolymers are seldom investigated. We examined the effects of elevated CO 2 and warming on the quantity and composition of suberin in roots of Bouteloua gracilis (C4) and Hesperostipa comata (C3) grass species at the Prairie Heating and CO 2 Enrichment (PHACE) experiment at Wyoming, USA. Roots of B. gracilis exposed to elevated CO 2 and warming had higher abundances of suberin and lignin than those exposed to ambient climate treatments. In addition to changes in their abundance, roots exposed to warming and elevated CO 2 had higher ω-hydroxy acids compared to plants grown under ambient conditions. The suberin content and composition in roots of H. comata was less responsive to climate treatments. In H. comata, α,ω-dioic acids increased with the main effect of elevated CO 2, whereas the total quantity of suberin exhibited an increasing trend with the main effect of warming and elevated CO 2. The increase in suberin content and altered composition could lower root decomposition rates with implications for root-derived soil carbon under global change. Our study also suggests that the climate change induced alterations in species composition will further mediate potential suberin contributions to soil carbon pools.« less

Warming and elevated CO 2 alter the suberin chemistry in roots of photosynthetically divergent grass species

DOE Office of Scientific and Technical Information (OSTI.GOV)

Suseela, Vidya; Tharayil, Nishanth; Pendall, Elise

A majority of soil carbon (C) is either directly or indirectly derived from fine roots, yet roots remain the least understood component of the terrestrial carbon cycle. The decomposability of fine roots and their potential to contribute to soil C is partly regulated by their tissue chemical composition. Roots rely heavily on heteropolymers such as suberins, lignins and tannins to adapt to various environmental pressures and to maximize their resource uptake functions. Since the chemical construction of roots is partly shaped by their immediate biotic/abiotic soil environments, global changes that perturb soil resource availability and plant growth could potentially altermore » root chemistry, and hence the decomposability of roots. However, the effect of global change on the quantity and composition of root heteropolymers are seldom investigated. We examined the effects of elevated CO 2 and warming on the quantity and composition of suberin in roots of Bouteloua gracilis (C4) and Hesperostipa comata (C3) grass species at the Prairie Heating and CO 2 Enrichment (PHACE) experiment at Wyoming, USA. Roots of B. gracilis exposed to elevated CO 2 and warming had higher abundances of suberin and lignin than those exposed to ambient climate treatments. In addition to changes in their abundance, roots exposed to warming and elevated CO 2 had higher ω-hydroxy acids compared to plants grown under ambient conditions. The suberin content and composition in roots of H. comata was less responsive to climate treatments. In H. comata, α,ω-dioic acids increased with the main effect of elevated CO 2, whereas the total quantity of suberin exhibited an increasing trend with the main effect of warming and elevated CO 2. The increase in suberin content and altered composition could lower root decomposition rates with implications for root-derived soil carbon under global change. Our study also suggests that the climate change induced alterations in species composition will further mediate potential suberin contributions to soil carbon pools.« less

Effects of rooting and tree growth of selected woodland species on cap integrity in a mineral capped landfill site.

PubMed

Hutchings, T R; Moffat, A J; Kemp, R A

2001-06-01

The above and below ground growth of three tree species (Alnus glutinosa, Pinus nigra var. maritima and Acer pseudoplatanus) was studied on a containment landfill site at Waterford, Hertfordshire, UK. Tree root architecture was studied using soil inspection pits excavated next to 12 trees of each species and mapped in detail. Tree height was related to soil thickness over the compacted mineral cap. No roots entered the cap where soil thickness was 1.3 m, but a few roots, especially of alder, were observed within it when the soil cover was 1.0 m or less. Micromorphological analysis of undisturbed samples of the mineral cap suggested that roots exploited weaknesses in the cap rather than actively causing penetration into it. Alder roots were more tolerant of anaerobic conditions within the cap than the other species examined. The results confirm that mineral caps should be covered by 1.5 m of soil or soil-forming material if tree establishment is intended over a restored landfill site, unless protected by other parts of a composite capping system.

[Effects of tree species fine root decomposition on soil active organic carbon].

PubMed

Liu, Yan; Wang, Si-Long; Wang, Xiao-Wei; Yu, Xiao-Jun; Yang, Yue-Jun

2007-03-01

With incubation test, this paper studied the effects of fine root decomposition of Alnus cremastogyne, Cunninghamia lanceolata and Michelia macclurei on the content of soil active organic carbon at 9 degrees C , 14 degrees C , 24 degrees C and 28 degrees C. The results showed that the decomposition rate of fine root differed significantly with test tree species, which was decreased in the order of M. macclurei > A. cremastogyne > C. lanceolata. The decomposition rate was increased with increasing temperature, but declined with prolonged incubation time. Fine root source, incubation temperature, and incubation time all affected the contents of soil microbial biomass carbon and water-soluble organic carbon. The decomposition of fine root increased soil microbial biomass carbon and water-soluble organic carbon significantly, and the effect decreased in the order of M. macclurei > A. cremastogyne > C. lanceolata. Higher contents of soil microbial biomass carbon and water-soluble organic carbon were observed at medium temperature and middle incubation stage. Fine root decomposition had less effect on the content of soil readily oxidized organic carbon.

Root adaptations to soils with low fertility and aluminium toxicity

PubMed Central

Rao, Idupulapati M.; Miles, John W.; Beebe, Stephen E.; Horst, Walter J.

2016-01-01

Background Plants depend on their root systems to acquire the water and nutrients necessary for their survival in nature, and for their yield and nutritional quality in agriculture. Root systems are complex and a variety of root phenes have been identified as contributors to adaptation to soils with low fertility and aluminium (Al) toxicity. Phenotypic characterization of root adaptations to infertile soils is enabling plant breeders to develop improved cultivars that not only yield more, but also contribute to yield stability and nutritional security in the face of climate variability. Scope In this review the adaptive responses of root systems to soils with low fertility and Al toxicity are described. After a brief introduction, the purpose and focus of the review are outlined. This is followed by a description of the adaptive responses of roots to low supply of mineral nutrients [with an emphasis on low availability of nitrogen (N) and phosphorus (P) and on toxic levels of Al]. We describe progress in developing germplasm adapted to soils with low fertility or Al toxicity using selected examples from ongoing breeding programmes on food (maize, common bean) and forage/feed (Brachiaria spp.) crops. A number of root architectural, morphological, anatomical and metabolic phenes contribute to the superior performance and yield on soils with low fertility and Al toxicity. Major advances have been made in identifying root phenes in improving adaptation to low N (maize), low P (common bean) or high Al [maize, common bean, species and hybrids of brachiariagrass, bulbous canarygrass (Phalaris aquatica) and lucerne (Medicago sativa)]. Conclusions Advanced root phenotyping tools will allow dissection of root responses into specific root phenes that will aid both conventional and molecular breeders to develop superior cultivars. These new cultivars will play a key role in sustainable intensification of crop–livestock systems, particularly in smallholder systems of the tropics. Development of these new cultivars adapted to soils with low fertility and Al toxicity is needed to improve global food and nutritional security and environmental sustainability. PMID:27255099

X-ray CT imaging and image-based modelling study of gas exchange in the rice rhizosphere

NASA Astrophysics Data System (ADS)

Affholder, Marie-Cecile; Keyes, Samuel David; Roose, Tiina; Heppell, James; Kirk, Guy

2016-04-01

We used X-ray computer tomography and image-based modelling to investigate CO2 uptake by rice roots growing in submerged soil, and its consequences for the chemistry and biology of the rhizosphere. From previous work, three processes are known to greatly modify the rhizophere of rice and other wetland plants: (1) oxygenation of the submerged, anoxic soil by O2 transported through the root gas channels (aerenchyma); (2) oxidation of ferrous iron and resulting accumulation of ferric oxide; and (3) pH changes due to protons formed in iron oxidation and released from the roots to balance excess intake of cations over anions. A further process, so far not much investigated, is the possibility of CO2 uptake by the roots. Large amounts of CO2 accumulate in submerged soils because CO2 formed in soil respiration escapes only slowly by diffusion through the water-saturated soil pores. There is therefore a large CO2 gradient between the soil and the aerenchyma inside the root, and CO2 may be taken up by the roots and vented to the atmosphere. The extent of this and its consequences for rhizosphere chemistry and biology are poorly understood. We grew rice plants in a submerged, strongly-reduced, Philippine rice soil contained in 10-cm diameter, 20-cm deep Perspex pots. Four-week old rice seedlings, grown in nutrient culture, were transplanted into the pots at either 1 or 4 plants per pot, planted closely together. After 3 and 4 weeks, the pots were analysed with an X-ray CT scanner (Custom Nikon/Xtek Hutch; 80 mm by 56 mm field of view and 40 μm voxel size). Gas bubbles were extracted from the data by 3D median filtering and roots using a region-growth method. The images showed prominent and abundant gas bubbles in the soil bulk, but no or very few bubbles in the soil close to roots. There was a clear relation between the absence of gas bubbles and the presence of roots, as well as an increasing concentration of bubbles with depth through the soil. Analysis of the bubbles showed they were approximately 50% CO2 by volume and 50% CH4. The corresponding concentrations of dissolved CO2 + HCO3- (NB CO2 is 20-times more soluble than CH4) in the soil bulk were of the order of 100 mM. We developed a mathematical model of CO2 generation and transport in submerged soil with uptake by and transport through rice roots, and used it to analyse the images. This showed that the observed depletion of CO2 around the roots was consistent with realistic values of parameters for the root gas permeability and rates of CO2 production and diffusion in submerged soil. Depletion of CO2 around the roots will have consequences for the chemistry of the rice rhizosphere and the extent of the root-induced pH changes and other changes listed above. In continuing work we are investigating the implications for the solubility and root uptake of soil Zn, deficiency of which is a widespread constraint to rice growth.

A Novel Growing Device Inspired by Plant Root Soil Penetration Behaviors

PubMed Central

Sadeghi, Ali; Tonazzini, Alice; Popova, Liyana; Mazzolai, Barbara

2014-01-01

Moving in an unstructured environment such as soil requires approaches that are constrained by the physics of this complex medium and can ensure energy efficiency and minimize friction while exploring and searching. Among living organisms, plants are the most efficient at soil exploration, and their roots show remarkable abilities that can be exploited in artificial systems. Energy efficiency and friction reduction are assured by a growth process wherein new cells are added at the root apex by mitosis while mature cells of the root remain stationary and in contact with the soil. We propose a new concept of root-like growing robots that is inspired by these plant root features. The device penetrates soil and develops its own structure using an additive layering technique: each layer of new material is deposited adjacent to the tip of the device. This deposition produces both a motive force at the tip and a hollow tubular structure that extends to the surface of the soil and is strongly anchored to the soil. The addition of material at the tip area facilitates soil penetration by omitting peripheral friction and thus decreasing the energy consumption down to 70% comparing with penetration by pushing into the soil from the base of the penetration system. The tubular structure provides a path for delivering materials and energy to the tip of the system and for collecting information for exploratory tasks. PMID:24587244

Role of Subsurface Physics in the Assimilation of Surface Soil Moisture Observations

NASA Technical Reports Server (NTRS)

Reichle, R. H.

2010-01-01

Root zone soil moisture controls the land-atmosphere exchange of water and energy and exhibits memory that may be useful for climate prediction at monthly scales. Assimilation of satellite-based surface soil moisture observations into a land surface model is an effective way to estimate large-scale root zone soil moisture. The propagation of surface information into deeper soil layers depends on the model-specific representation of subsurface physics that is used in the assimilation system. In a suite of experiments we assimilate synthetic surface soil moisture observations into four different models (Catchment, Mosaic, Noah and CLM) using the Ensemble Kalman Filter. We demonstrate that identical twin experiments significantly overestimate the information that can be obtained from the assimilation of surface soil moisture observations. The second key result indicates that the potential of surface soil moisture assimilation to improve root zone information is higher when the surface to root zone coupling is stronger. Our experiments also suggest that (faced with unknown true subsurface physics) overestimating surface to root zone coupling in the assimilation system provides more robust skill improvements in the root zone compared with underestimating the coupling. When CLM is excluded from the analysis, the skill improvements from using models with different vertical coupling strengths are comparable for different subsurface truths. Finally, the skill improvements through assimilation were found to be sensitive to the regional climate and soil types.

Effects of soil compaction on root and root hair morphology: implications for campsite rehabilitation

Treesearch

L. Alessa; C. G. Earnhart

2000-01-01

Recreational use of wild lands can create areas, such as campsites, which may experience soil compaction and a decrease in vegetation cover and diversity. Plants are highly reliant on their roots’ ability to uptake nutrients and water from soil. Any factors that affect the highly specialized root hairs (“feeder cells”) compromise the overall health and survival of the...

Natural and anthropogenic radioactivity levels and the associated radiation hazard in the soil of Oodalia Tea Estate in the hilly region of Fatickchari in Chittagong, Bangladesh.

PubMed

Absar, Nurul; Rahman, M Mashiur; Kamal, Masud; Siddique, Naziba; Chowdhury, Mantazul Islam

2014-11-01

Radioactivity in the soil of a tea garden in the Fatickchari area in Chittagong, Bangladesh, was measured using a high-resolution HPGe detector. The soil samples were collected from depths of up to 20 cm beneath the soil surface. The activity concentrations of naturally occurring (238)U and (232)Th were observed to be in the range of 27 ± 7 to 53 ± 8 Bq kg(-1) and 36 ± 11 to 72 ± 11 Bq kg(-1), respectively. The activity concentration of (40)K ranged from 201 ± 78 to 672 ± 81 Bq kg(-1), and the highest activity of fallout (137)Cs observed was 10 ± 1 Bq kg(-1). The average activity concentration observed for (238)U was 39 ± 8 Bq kg(-1), for (232)Th was 57 ± 11 Bq kg(-1), for (40)K was 384 ± 79 Bq kg(-1) and for (137)Cs was 5 ± 0.5 Bq kg(-1). The radiological hazard parameters (representative level index, radium equivalent activity, outdoor and indoor dose rates, outdoor and indoor annual effective dose equivalents, and radiation hazard index) were calculated from the radioactivity in the soil. © The Author 2014. Published by Oxford University Press on behalf of The Japan Radiation Research Society and Japanese Society for Radiation Oncology.

Changes in microbial structure and functional communities at different soil depths during 13C labelled root litter degradation

NASA Astrophysics Data System (ADS)

Sanaullah, Muhammad; Baumann, Karen; Chabbi, Abad; Dignac, Marie-France; Maron, Pierre-Alain; Kuzyakov, Yakov; Rumpel, Cornelia

2014-05-01

Soil organic matter turnover depends on substrate quality and microbial activity in soil but little is known about how addition of freshly added organic material modifies the diversity of soil microbial communities with in a soil profile. We took advantage of a decomposition experiment, which was carried out at different soil depths under field conditions and sampled litterbags with 13C-labelled wheat roots, incubated in subsoil horizons at 30, 60 and 90 cm depth for up to 36 months. The effect of root litter addition on microbial community structure, diversity and activity was studied by determining total microbial biomass, PLFA signatures, molecular tools (DNA genotyping and pyrosequencing of 16S and 18S rDNAs) and extracellular enzyme activities. Automated ribosomal intergenic spacer analysis (ARISA) was also carried out to determine the differences in microbial community structure. We found that with the addition of root litter, total microbial biomass as well as microbial community composition and structure changed at different soil depths and change was significantly higher at top 30cm soil layer. Moreover, in the topsoil, population of both gram-positive and gram-negative bacteria increased with root litter addition over time, while subsoil horizons were relatively dominated by fungal community. Extra-cellular enzyme activities confirmed relatively higher fungal community at subsoil horizons compared with surface soil layer with bacteria dominant microbial population. Bacterial-ARISA profiling illustrated that the addition of root litter enhanced the abundance of Actinobacteria and Proteobacteria, at all three soil depths. These bacteria correspond to copiotrophic attributes, which can preferentially consume of labile soil organic C pools. While disappearance of oligotrophic Acidobacteria confirmed the shifting of microbial communities due to the addition of readily available substrate. We concluded that root litter mixing altered microbial community development which was soil horizon specific and its effects on soil microbial activity may impact on nutrient cycling.

Experimentally reduced root-microbe interactions reveal limited plasticity in functional root traits in Acer and Quercus.

PubMed

Lee, Mei-Ho; Comas, Louise H; Callahan, Hilary S

2014-02-01

Interactions between roots and soil microbes are critical components of below-ground ecology. It is essential to quantify the magnitude of root trait variation both among and within species, including variation due to plasticity. In addition to contextualizing the magnitude of plasticity relative to differences between species, studies of plasticity can ascertain if plasticity is predictable and whether an environmental factor elicits changes in traits that are functionally advantageous. To compare functional traits and trait plasticities in fine root tissues with natural and reduced levels of colonization by microbial symbionts, trimmed and surface-sterilized root segments of 2-year-old Acer rubrum and Quercus rubra seedlings were manipulated. Segments were then replanted into satellite pots filled with control or heat-treated soil, both originally derived from a natural forest. Mycorrhizal colonization was near zero in roots grown in heat-treated soil; roots grown in control soil matched the higher colonization levels observed in unmanipulated root samples collected from field locations. Between-treatment comparisons revealed negligible plasticity for root diameter, branching intensity and nitrogen concentration across both species. Roots from treated soils had decreased tissue density (approx. 10-20 %) and increased specific root length (approx. 10-30 %). In contrast, species differences were significant and greater than treatment effects in traits other than tissue density. Interspecific trait differences were also significant in field samples, which generally resembled greenhouse samples. The combination of experimental and field approaches was useful for contextualizing trait plasticity in comparison with inter- and intra-specific trait variation. Findings that root traits are largely species dependent, with the exception of root tissue density, are discussed in the context of current literature on root trait variation, interactions with symbionts and recent progress in standardization of methods for quantifying root traits.

Secondary metabolites and metal content dynamics in Teucrium montanum L. and Teucrium chamaedrys L. from habitats with serpentine and calcareous substrate.

PubMed

Zlatić, Nenad M; Stanković, Milan S; Simić, Zoran S

2017-03-01

The purpose of this comparative analysis is the determination of the total quantity of metals (Mg, Ca, K, Ni, Fe, Mn, Zn, Cu, Cr and Pb) in soil samples, above ground plant parts and tea made of plants Teucrium montanum and T. chamaedrys from different serpentine and calcareous habitats as well as of the total quantity of phenolic compounds and antioxidant activity. The obtained results showed that the quantities of certain metals (Mg, Fe, Ni and Mn) in the soil from the serpentine habitats were greater in comparison with other metals (Ca, Zn and Pb) which were more frequently found in the soil from the calcareous habitats. The results demonstrated that the analysed plant samples from the serpentine habitats contained higher quantity of Fe, Ni and Cr as opposed to the plant samples from the calcareous habitats which contained greater quantity of Ca and Zn. Although the studied species accumulate analysed metals in different quantities, depending on the substrate type, they are not hyperaccumulators of these metals. The use of these species from serpentine habitats for tea preparation is safe to a great extent, because in spite of the determined metal absorption by plant organs, the tea does not contain dangerous quantity of heavy metals. The results showed greater total quantity of phenolic compounds and the higher level of antioxidant activity in the plant samples from serpentine habitats in comparison with the samples from calcareous habitats, which is an indicator of one of the mechanisms of adaptation to the serpentine habitat conditions.

What can we learn from in-soil imaging of a live plant: X-ray Computed Tomography and 3D numerical simulation of root-soil system

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yang, Xiaofan; Varga, Tamas; Liu, Chongxuan

Plant roots play a critical role in plant-soil-microbe interactions that occur in the rhizosphere. X-ray Computed Tomography (XCT) has been proven to be an effective tool for non-invasive root imaging and analysis. A combination of XCT, open-source software, and in-house developed code was used to non-invasively image a prairie dropseed (Sporobolus heterolepis) specimen, segment the root data to obtain a 3D image of the root structure, and extract quantitative information from the 3D data, respectively. Based on the explicitly-resolved root structure, pore-scale computational fluid dynamics (CFD) simulations were applied to numerically investigate the root-soil-groundwater system. The plant root conductivity, soilmore » hydraulic conductivity and transpiration rate were shown to control the groundwater distribution. Furthermore, the coupled imaging-modeling approach demonstrates a realistic platform to investigate rhizosphere flow processes and would be feasible to provide useful information linked to upscaled models.« less

What can we learn from in-soil imaging of a live plant: X-ray Computed Tomography and 3D numerical simulation of root-soil system

DOE PAGES

Yang, Xiaofan; Varga, Tamas; Liu, Chongxuan; ...

2017-05-04

Plant roots play a critical role in plant-soil-microbe interactions that occur in the rhizosphere. X-ray Computed Tomography (XCT) has been proven to be an effective tool for non-invasive root imaging and analysis. A combination of XCT, open-source software, and in-house developed code was used to non-invasively image a prairie dropseed (Sporobolus heterolepis) specimen, segment the root data to obtain a 3D image of the root structure, and extract quantitative information from the 3D data, respectively. Based on the explicitly-resolved root structure, pore-scale computational fluid dynamics (CFD) simulations were applied to numerically investigate the root-soil-groundwater system. The plant root conductivity, soilmore » hydraulic conductivity and transpiration rate were shown to control the groundwater distribution. Furthermore, the coupled imaging-modeling approach demonstrates a realistic platform to investigate rhizosphere flow processes and would be feasible to provide useful information linked to upscaled models.« less

Compensatory Root Water Uptake of Overlapping Root Systems

NASA Astrophysics Data System (ADS)

Agee, E.; Ivanov, V. Y.; He, L.; Bisht, G.; Shahbaz, P.; Fatichi, S.; Gough, C. M.; Couvreur, V.; Matheny, A. M.; Bohrer, G.

2015-12-01

Land-surface models use simplified representations of root water uptake based on biomass distributions and empirical functions that constrain water uptake during unfavorable soil moisture conditions. These models fail to capture the observed hydraulic plasticity that allows plants to regulate root hydraulic conductivity and zones of active uptake based on local gradients. Recent developments in root water uptake modeling have sought to increase its mechanistic representation by bridging the gap between physically based microscopic models and computationally feasible macroscopic approaches. It remains to be demonstrated whether bulk parameterization of microscale characteristics (e.g., root system morphology and root conductivity) can improve process representation at the ecosystem scale. We employ the Couvreur method of microscopic uptake to yield macroscopic representation in a coupled soil-root model. Using a modified version of the PFLOTRAN model, which represents the 3-D physics of variably saturated soil, we model a one-hectare temperate forest stand under natural and synthetic climatic forcing. Our results show that as shallow soil layers dry, uptake at the tree and stand level shift to deeper soil layers, allowing the transpiration stream demanded by the atmosphere. We assess the potential capacity of the model to capture compensatory root water uptake. Further, the hydraulic plasticity of the root system is demonstrated by the quick response of uptake to rainfall pulses. These initial results indicate a promising direction for land surface models in which significant three-dimensional information from large root systems can be feasibly integrated into the forest scale simulations of root water uptake.

The tri-soil experiment: do plants discriminate among vegetation soil types?

USDA-ARS?s Scientific Manuscript database

We tested if rooting mass and root nutrient uptake of cheatgrass (Bromus tectorum) or creeping wildrye (Leymus triticoides) were influenced by vegetation soil type. Three soil types (A horizons), similar in gross physical and chemical properties, were freshly-collected. The soils varied in the veget...

The Automated Root Exudate System (ARES): a method to apply solutes at regular intervals to soils in the field.

PubMed

Lopez-Sangil, Luis; George, Charles; Medina-Barcenas, Eduardo; Birkett, Ali J; Baxendale, Catherine; Bréchet, Laëtitia M; Estradera-Gumbau, Eduard; Sayer, Emma J

2017-09-01

Root exudation is a key component of nutrient and carbon dynamics in terrestrial ecosystems. Exudation rates vary widely by plant species and environmental conditions, but our understanding of how root exudates affect soil functioning is incomplete, in part because there are few viable methods to manipulate root exudates in situ . To address this, we devised the Automated Root Exudate System (ARES), which simulates increased root exudation by applying small amounts of labile solutes at regular intervals in the field.The ARES is a gravity-fed drip irrigation system comprising a reservoir bottle connected via a timer to a micro-hose irrigation grid covering c . 1 m 2 ; 24 drip-tips are inserted into the soil to 4-cm depth to apply solutions into the rooting zone. We installed two ARES subplots within existing litter removal and control plots in a temperate deciduous woodland. We applied either an artificial root exudate solution (RE) or a procedural control solution (CP) to each subplot for 1 min day -1 during two growing seasons. To investigate the influence of root exudation on soil carbon dynamics, we measured soil respiration monthly and soil microbial biomass at the end of each growing season.The ARES applied the solutions at a rate of c . 2 L m -2  week -1 without significantly increasing soil water content. The application of RE solution had a clear effect on soil carbon dynamics, but the response varied by litter treatment. Across two growing seasons, soil respiration was 25% higher in RE compared to CP subplots in the litter removal treatment, but not in the control plots. By contrast, we observed a significant increase in microbial biomass carbon (33%) and nitrogen (26%) in RE subplots in the control litter treatment.The ARES is an effective, low-cost method to apply experimental solutions directly into the rooting zone in the field. The installation of the systems entails minimal disturbance to the soil and little maintenance is required. Although we used ARES to apply root exudate solution, the method can be used to apply many other treatments involving solute inputs at regular intervals in a wide range of ecosystems.

Aluminium tolerance of root hairs underlies genotypic differences in rhizosheath size of wheat (Triticum aestivum) grown on acid soil.

PubMed

Delhaize, Emmanuel; James, Richard A; Ryan, Peter R

2012-08-01

We found significant genetic variation in the ability of wheat (Triticum aestivum) to form rhizosheaths on acid soil and assessed whether differences in aluminium (Al(3+) ) tolerance of root hairs between genotypes was the physiological basis for this genetic variation. A method was developed to rapidly screen rhizosheath size in a range of wheat genotypes. Backcrossed populations were generated from cv Fronteira (large rhizosheath) using cv EGA-Burke (small rhizosheath) as the recurrent parent. A positive correlation existed between rhizosheath size on acid soil and root hair length. In hydroponic experiments, root hairs of the backcrossed lines with large rhizosheaths were more tolerant of Al(3+) toxicity than the backcrossed lines with small rhizosheaths. We conclude that greater Al(3+) tolerance of root hairs underlies the larger rhizosheath of wheat grown on acid soil. Tolerance of the root hairs to Al(3+) was largely independent of the TaALMT1 gene which suggests that different genes encode the Al(3+) tolerance of root hairs. The maintenance of longer root hairs in acid soils is important for the efficient uptake of water and nutrients. © 2012 The Authors. New Phytologist © 2012 New Phytologist Trust.

Influence of root-water-uptake parameterization on simulated heat transport in a structured forest soil

NASA Astrophysics Data System (ADS)

Votrubova, Jana; Vogel, Tomas; Dohnal, Michal; Dusek, Jaromir

2015-04-01

Coupled simulations of soil water flow and associated transport of substances have become a useful and increasingly popular tool of subsurface hydrology. Quality of such simulations is directly affected by correctness of its hydraulic part. When near-surface processes under vegetation cover are of interest, appropriate representation of the root water uptake becomes essential. Simulation study of coupled water and heat transport in soil profile under natural conditions was conducted. One-dimensional dual-continuum model (S1D code) with semi-separate flow domains representing the soil matrix and the network of preferential pathways was used. A simple root water uptake model based on water-potential-gradient (WPG) formulation was applied. As demonstrated before [1], the WPG formulation - capable of simulating both the compensatory root water uptake (in situations when reduced uptake from dry layers is compensated by increased uptake from wetter layers), and the root-mediated hydraulic redistribution of soil water - enables simulation of more natural soil moisture distribution throughout the root zone. The potential effect on heat transport in a soil profile is the subject of the present study. [1] Vogel T., M. Dohnal, J. Dusek, J. Votrubova, and M. Tesar. 2013. Macroscopic modeling of plant water uptake in a forest stand involving root-mediated soil-water redistribution. Vadose Zone Journal, 12, 10.2136/vzj2012.0154. The research was supported by the Czech Science Foundation Project No. 14-15201J.

Integration of root phenes revealed by intensive phenotyping of root system architecture, anatomy, and physiology in cereals

NASA Astrophysics Data System (ADS)

York, Larry

2015-04-01

Food insecurity is among the greatest challenges humanity will face in the 21st century. Agricultural production in much of the world is constrained by the natural infertility of soil which restrains crops from reaching their yield potential. In developed nations, fertilizer inputs pollute air and water and contribute to climate change and environmental degradation. In poor nations low soil fertility is a primary constraint to food security and economic development. Water is almost always limiting crop growth in any system. Increasing the acquisition efficiency of soil resources is one method by which crop yields could be increased without the use of more fertilizers or irrigation. Cereals are the most widely grown crops, both in terms of land area and in yield, so optimizing uptake efficiency of cereals is an important goal. Roots are the primary interface between plant and soil and are responsible for the uptake of soil resources. The deployment of roots in space and time comprises root system architecture (RSA). Cereal RSA is a complex phenotype that aggregates many elemental phenes (elemental units of phenotype). Integration of root phenes will be determined by interactions through their effects on soil foraging and plant metabolism. Many architectural, metabolic, and physiological root phenes have been identified in maize, including: nodal root number, nodal root growth angle, lateral root density, lateral root length, aerenchyma, cortical cell size and number, and nitrate uptake kinetics. The utility of these phenes needs confirmation in maize and in other cereals. The maize root system is composed of an embryonic root system and nodal roots that emerge in successive whorls as the plant develops, and is similar to other cereals. Current phenotyping platforms often ignore the inner whorls and instead focus on the most visible outer whorls after excavating a maize root crown from soil. Here, an intensive phenotyping platform evaluating phenes of all nodal root whorls in maize is introduced, and field work demonstrated how the variation within the root crown has functional significance for nitrogen acquisition. Nodal root number was decomposed to more elemental phenes including the number of nodes and the occupancies of each node. Simulations demonstrated that root systems forming fewer nodal roots and with delayed emergence perform well in low nitrogen soils. Nitrate uptake kinetics (NUK) also varied within the maize root system, and simulations showing a lack of interaction between NUK and RSA reflects a knowledge gap in the costs of NUK at the molecular level. Finally, maize RSA among hybrids from different era periods over the past 100 years suggests evolution towards more nitrogen efficient root phene states. This work will be discussed within the context of next-generation root phenotyping of cereals, the dilemma between extensive and intensive phenotyping, and the need for linking across scales and methods.

Measuring and modeling three-dimensional water uptake of a growing faba bean (Vicia faba) within a soil column

NASA Astrophysics Data System (ADS)

Huber, Katrin; Koebernick, Nicolai; Kerkhofs, Elien; Vanderborght, Jan; Javaux, Mathieu; Vetterlein, Doris; Vereecken, Harry

2014-05-01

A faba bean was grown in a column filled with a sandy soil, which was initially close to saturation and then subjected to a single drying cycle of 30 days. The column was divided in four hydraulically separated compartments using horizontal paraffin layers. Paraffin is impermeable to water but penetrable by roots. Thus by growing deeper, the roots can reach compartments that still contain water. The root architecture was measured every second day by X-ray CT. Transpiration rate, soil matric potential in four different depths, and leaf area were measured continously during the experiment. To investigate the influence of the partitioning of available soil water in the soil column on water uptake, we used R-SWMS, a fully coupled root and soil water model [1]. We compared a scenario with and without the split layers and investigated the influence on root xylem pressure. The detailed three-dimensional root architecture was obtained by reconstructing binarized root images manually with a virtual reality system, located at the Juelich Supercomputing Centre [2]. To verify the properties of the root system, we compared total root lengths, root length density distributions and root surface with estimations derived from Minkowski functionals [3]. In a next step, knowing the change of root architecture in time, we could allocate an age to each root segment and use this information to define age dependent root hydraulic properties that are required to simulate water uptake for the growing root system. The scenario with the split layers showed locally much lower pressures than the scenario without splits. Redistribution of water within the unrestricted soil column led to a more uniform distribution of water uptake and lowers the water stress in the plant. However, comparison of simulated and measured pressure heads with tensiometers suggested that the paraffin layers were not perfectly hydraulically isolating the different soil layers. We could show compensation efficiency of water uptake by the roots in the lower and wetter compartments. By comparing transpiration rates of experiments with and without additional paraffin layers, we were able to quantify restrictions of plant growth to available soil water. [1] Javaux, M., T. Schröder, J. Vanderborght, and H. Vereecken (2008), Use of a Three-Dimensional Detailed Modeling Approach for Predicting Root Water Uptake, Vadose Zone Journal, 7(3), 1079-1079. [2] Stingaciu, L., H. Schulz, A. Pohlmeier, S. Behnke, H. Zilken, M. Javaux, H. Vereecken (2013), In Situ Root System Architecture Extraction from Magnetic Resonance Imaging for Water Uptake Modeling, Vadose Zone Journal, 12(1). [3] Koebernick, N., U. Weller, K. Huber, S. Schlüter, H.-J. Vogel, R. Jahn; H. Vereecken, D. Vetterlein, In situ visualisation and quantification of root-system architecture and growth with X-ray CT, Manuscript submitted for publication.

Pathways of soil moisture controls on boundary layer dynamics

NASA Astrophysics Data System (ADS)

Siqueira, M.; Katul, G.; Porporato, A.

2007-12-01

Soil moisture controls on precipitation are now receiving significant attention in climate systems because the memory of their variability is much slower than the memory of the fast atmospheric processes. We propose a new model that integrates soil water dynamics, plant hydraulics and stomatal responses to water availability to estimate root water uptake and available energy partitioning, as well as feedbacks to boundary layer dynamics (in terms of water vapor and heat input to the atmospheric system). Using a simplified homogenization technique, the model solves the intrinsically 3-D soil water movement equations by two 1-D coupled Richards' equations. The first resolves the radial water flow from bulk soil to soil-root interface to estimate root uptake (assuming the vertical gradients in moisture persist during the rapid lateral flow), and then it solves vertical water movement through the soil following the radial moisture adjustments. The coupling between these two equations is obtained by area averaging the soil moisture in the radial domain (i.e. homogenization) to calculate the vertical fluxes. For each vertical layer, the domain is discretized in axi-symmetrical grid with constant soil properties. This is deemed to be appropriate given the fact that the root uptake occurs on much shorter time scales closely following diurnal cycles, while the vertical water movement is more relevant to the inter-storm time scale. We show that this approach was able to explicitly simulate known features of root uptake such as diurnal hysteresis of canopy conductance, water redistribution by roots (hydraulic lift) and downward shift of root uptake during drying cycles. The model is then coupled with an atmospheric boundary layer (ABL) growth model thereby permitting us to explore low-dimensional elements of the interaction between soil moisture and ABL states commensurate with the lifting condensation level.

Impacts of root traits and genotypic diversity in switchgrass cropping systems on biogeochemical cycling of soil carbon and nitrogen

NASA Astrophysics Data System (ADS)

De Graaff, M. A.; Jastrow, J. D.; Adkins, J.; Johns, A. C.; Morris, G.; Six, J.

2016-12-01

Land-use change for bioenergy production can create greenhouse gas (GHG) emissions through disturbance of soil carbon (C) pools, but native species with extensive root systems may rapidly repay the GHG debt by enhancing soil C sequestration upon land-use change, particularly when grown in diverse mixtures. Here we investigated how root traits and genotypic diversity in switchgrass (Panicum virgatum) impacts yield, nitrogen (N) cycling and soil C stabilization. Owing to extensive within-species variation in root morphology and architecture among the switchgrass cultivars, we hypothesized that increasing cultivar diversity would enhance belowground niche differentiation, thereby increasing N use efficiency, yield, and ultimately soil C stabilization. Our experiment was conducted at the Fermilab National Environmental Research Park, in northeastern Illinois, USA, where we varied the level of switchgrass genotypic diversity using various local and non-local cultivars (1, 2, 4, or 6 cultivars per plot) in a replicated field trial. We found that genotypic mixtures had one-third higher biomass production than the average monoculture, and no monoculture was significantly higher yielding than the average mixture. Further, year-to-year variation in yields was reduced in the mixture of switchgrass relative to the species monocultures. Despite positive impacts of increased intraspecific diversity on biomass production, we found no effect on N use efficiency, or soil C sequestration. However there were differences among cultivars in soil C input and soil C stabilization. These differences were related to specific root length (SRL), where greater SRL was accompanied by more root-derived soil C. Our findings suggest SRL is a root trait that affects soil C input, and that genotypic mixtures could help provide high, stable yields of high-quality biomass feedstocks.

Modelling of trace metal uptake by roots taking into account complexation by exogenous organic ligands

NASA Astrophysics Data System (ADS)

Jean-Marc, Custos; Christian, Moyne; Sterckeman, Thibault

2010-05-01

The context of this study is phytoextraction of soil trace metals such as Cd, Pb or Zn. Trace metal transfer from soil to plant depends on physical and chemical processes such as minerals alteration, transport, adsorption/desorption, reactions in solution and biological processes including the action of plant roots and of associated micro-flora. Complexation of metal ions by organic ligands is considered to play a role on the availability of trace metals for roots in particular in the event that synthetic ligands (EDTA, NTA, etc.) are added to the soil to increase the solubility of the contaminants. As this role is not clearly understood, we wanted to simulate it in order to quantify the effect of organic ligands on root uptake of trace metals and produce a tool which could help in optimizing the conditions of phytoextraction.We studied the effect of an aminocarboxilate ligand on the absorption of the metal ion by roots, both in hydroponic solution and in soil solution, for which we had to formalize the buffer power for the metal. We assumed that the hydrated metal ion is the only form which can be absorbed by the plants. Transport and reaction processes were modelled for a system made up of the metal M, a ligand L and the metal complex ML. The Tinker-Nye-Barber model was adapted to describe the transport of solutes M, L and ML in the soil and absorption of M by the roots. This allowed to represent the interactions between transport, chelating reactions, absorption of the solutes at the root surface, root growth with time, in order to simulate metal uptake by a whole root system.Several assumptions were tested such as i) absorption of the metal by an infinite sink and according to a Michaelis-Menten kinetics, solutes transport by diffusion with and without ii) mass flow and iii) soil buffer power for the ligand L. In hydroponic solution (without soil buffer power), ligands decreased the trace metal flux towards roots, as they reduced the concentration of hydrated metal ion. In soil, depending on the L/M ratio, the presence of metal complexes could increase the metal flux taken up by roots since the ligand desorbed the metal on soil solid phase while the complex dissociated and provided metal ions to the solution in the vicinity of the root.The model enabled to surround the conditions in which phytoextraction is thus optimized. In addition of complexation by organic ligands added to the soil, we expect to integrate complexation by roots organic exudates and by soil organic matter, as well as the competition of the metal ions with Ca2+ et H+.

Measurements of water uptake of maize roots: insights for traits that influence water transport from the soil

NASA Astrophysics Data System (ADS)

Ahmed, Mutez A.; Zarebanadkouki, Mohsen; Kroener, Eva; Carminati, Andrea

2015-04-01

Water availability is a primary constraint to the global crop production. Although maize (Zea mays L.) is one of the most important crops worldwide, there is limited information on the function of different root segments and types in extracting water from soils. Aim of this study was to investigate the location of water uptake in maize roots. We used neutron radiography to: 1) image the spatial distribution of maize roots in soil and 2) trace the transport of injected deuterated water (D2O) in soil and roots. Maize plants were grown in aluminum containers (40×38×1 cm) filled with sandy soil. The soil was partitioned into different compartments using 1-cm-thick layers of coarse sand. When the plants were two weeks-old we injected D2O into selected soil compartments. The experiments were performed during the day (transpiring plants) and night (non transpiring plants). The transport of D2O into roots was simulated using a convection-diffusion numerical model of D2O transport into roots. By fitting the observed D2O transport we quantified the diffusion coefficient and the water uptake of the different root segments. The maize root architecture consisted of a primary root, 4-5 seminal roots and many lateral roots connected to the primary and seminal roots. Laterals emerged from the proximal 15 cm of the primary and seminal roots. Both during day and night measurements, D2O entered more quickly into lateral roots than into primary and seminal roots. The quick transport of D2O into laterals was caused by the small radius of lateral roots. The diffusion coefficient of lateral roots (4.68×10-7cm2s-1)was similar to that of the distal segments of seminal roots (4.72×10-7cm2s-1) and higher than of the proximal segments (1.42×10-7cm2s-1). Water uptake of lateral roots (1.64×10-5cms-1)was much higher than that of the distal segments of seminal roots (1.18×10-12cms-1). Water uptake of the proximal seminal segments was negligible. We conclude that the function of lateral roots is to absorb water from the soil, while the function of the primary and seminal roots is to axially transport water to the shoot. Breeding for lateral roots with high radial conductivity and seminal roots with large xylem vessels diameter would be beneficial in agroecosystems where water is available. In contrast, in arid and semi-arid areas seminal roots with a smaller xylem vessel diameter combined with deep branching of laterals would reduce transpiration rate and at the same time allow the uptake of water stored in the subsoil (Richards and Passioura 1989). Reference Richards RA, Passioura JB. (1989) A breeding program to reduce the diameter of the major xylem vessel in the seminal roots of wheat and its effect on grain yield in rain-fed environments. Australian Journal of Agricultural Research 40, 943-950.

Using thermodynamics to assess biotic and abiotic impediments to root water uptake

NASA Astrophysics Data System (ADS)

Bechmann, Marcel; Hildebrandt, Anke; Kleidon, Axel

2016-04-01

Root water uptake has been the subject of extensive research, dealing with understanding the processes limiting transpiration and understanding strategies of plants to avoid water stress. Many of those studies use models of water flow from the soil through the plant into the atmosphere to learn about biotic and abiotic factors affecting plant water relations. One important question in this context is to identify those processes that are most limiting to water transport, and specifically whether these processes lie within the plant or the soil? Here, we propose to use a thermodynamic formulation of root water uptake to answer this question. The method allows us to separate the energy exported at the root collar into a sum of energy fluxes related to all processes along the flow path, notably including the effect of increasing water retention in drier soils. Evaluation of the several contributions allows us to identify and rank the processes by how much these impede water flow from the soil to the atmosphere. The application of this approach to a complex 3-dimensional root water uptake model reveals insights on the role of root versus soil resistances to limit water flow. We investigate the efficiency of root water uptake in an ensemble of root systems with varying root hydraulic properties. While root morphology is kept the same, root radial and axial resistances are artificially varied. Starting with entirely young systems (uptake roots, high radial, low axial conductance) we increasingly add older roots (transport roots, high axial, low radial conductance) to improve transport within root systems. This yields a range of root hydraulic architectures, where the extremes are limited either by radial uptake capacity or low capacity to transport water along the root system. We model root water uptake in this range of root systems with a 3-dimensional root water uptake model in two different soils, applying constant flux boundary conditions in a dry down experiment and evaluate energy fluxes afterwards. The results show that a minimum of energy is exported in mixed root systems, but a wide range of root systems act near the optimum. A great loss of efficiency only occurs in the extreme cases (only young or only old roots). In all systems near the optimum root water uptake is impeded equally by abiotic and biotic factors in moist conditions, whereas abiotic factors become the limiting factor in dry conditions. The abiotic factors depend on the soil type and are either due to the water retention function or water flow towards individual roots. Small changes in the distribution of root resistance shift the impediments from radial to axial flow path within the root, but without much affecting overall energy export. This suggests that abiotic factors are a dominant control for efficient root water uptake, while morphology only has a comparatively smaller effect, as long as the root system contains a minimum mixture of uptake and transport roots.

Germination and root elongation bioassays in six different plant species for testing Ni contamination in soil.

PubMed

Visioli, Giovanna; Conti, Federica D; Gardi, Ciro; Menta, Cristina

2014-04-01

In vitro short-term chronic phytotoxicity germination and root elongation test were applied to test the effects of nickel (Ni) in seed germination and root elongation in six plants species: Cucumis sativus (Cucurbitaceae), Lepidium sativum and Brassica nigra (Brassicaceae), Trifolium alexandrinum and Medicago sativa (Fabaceae), Phacelia tanacetifolia (Boraginaceae). A naturally Ni rich soil was used to compare the results obtained. Unlike root elongation, germination was not affected by Ni in any of the six species tested. EC50 values, calculated on the root elongation, showed that Ni toxicity decreases in the following order: P. tanacetifolia > B. nigra > C. sativus > L. sativum > M. sativa > T. alexandrinum. The test conducted using soil elutriate revealed a significantly lower effect in both seed germination and root elongation when compared to the results obtained using untreated soil. Conversely, the test performed on soil confirmed the high sensitivity of C. sativus, P. tanacetifolia and L. sativum to Ni.

Fine-Root Production in an Amazon Rain Forest: Deep Roots are an Important Component of Net Primary Productivity

NASA Astrophysics Data System (ADS)

Norby, R.; Cordeiro, A. L.; Oblitas, E.; Valverde-Barrantes, O.; Quesada, C. A.

2017-12-01

Fine-root production is a significant component of net primary production (NPP), but it is the most difficult of the major components to measure. Data on fine-root production are especially sparse from tropical forests, and therefore the estimates of tropical forest NPP may not be accurate. Many estimates of fine-root production are based on observations in the top 15 or 30 cm of soil, with the implicit assumption that this approach will capture most of the root distribution. We measured fine-root production in a 30-m tall, old-growth, terra firme rain forest near Manaus, Brazil, which is the site for a free-air CO2 enrichment (FACE) experiment. Ten minirhizotrons were installed at a 45 degree angle to a depth of 1.1 meters; the tubes were installed 2 years before any measurements were made to allow the root systems to recover from disturbance. Images were collected biweekly, and measurements of root length per area of minirhizotron window were scaled up to grams of root per unit land area. Scaling up minirhizotron measurments is problematic, but our estimate of fine-root standing crop in the top 15 cm of soil (281 ± 37 g dry matter m-2) compares well with a direct measurement of fine roots in two nearby 15-cm soil cores (290 ± 37 g m-2). Although the largest fraction of the fine-root standing crop was in the upper soil horizons, 44% of the fine-root mass was deeper than 30 cm, and 17% was deeper than 60 cm. Annual fine-root production was 934 ± 234 g dry matter m-2 (453 ± 113 g C m-2), which was 35% of estimated NPP of the forest stand (1281 g C m-2). A previous estimate of NPP of the forest at this site was smaller (1010 g m-2), but that estimate relied on fine-root production measured elsewhere and only in the top 10 or 30 cm of soil; fine roots accounted for 21% of NPP in that analysis. Extending root observations deeper into the soil will improve estimates of the contribution of fine-root production to NPP, which will in turn improve estimates of ecosystem carbon use efficiency. Improved measurements of roots and their distribution throughout the soil profile will advance our understanding of water and nutrient acquisition by trees and provide important benchmarks for models of biogeochemical cycling in tropical ecosystems and their responses to elevated atmospheric CO2.

GLO-Roots: an imaging platform enabling multidimensional characterization of soil-grown root systems

PubMed Central

Rellán-Álvarez, Rubén; Lobet, Guillaume; Lindner, Heike; Pradier, Pierre-Luc; Sebastian, Jose; Yee, Muh-Ching; Geng, Yu; Trontin, Charlotte; LaRue, Therese; Schrager-Lavelle, Amanda; Haney, Cara H; Nieu, Rita; Maloof, Julin; Vogel, John P; Dinneny, José R

2015-01-01

Root systems develop different root types that individually sense cues from their local environment and integrate this information with systemic signals. This complex multi-dimensional amalgam of inputs enables continuous adjustment of root growth rates, direction, and metabolic activity that define a dynamic physical network. Current methods for analyzing root biology balance physiological relevance with imaging capability. To bridge this divide, we developed an integrated-imaging system called Growth and Luminescence Observatory for Roots (GLO-Roots) that uses luminescence-based reporters to enable studies of root architecture and gene expression patterns in soil-grown, light-shielded roots. We have developed image analysis algorithms that allow the spatial integration of soil properties, gene expression, and root system architecture traits. We propose GLO-Roots as a system that has great utility in presenting environmental stimuli to roots in ways that evoke natural adaptive responses and in providing tools for studying the multi-dimensional nature of such processes. DOI: http://dx.doi.org/10.7554/eLife.07597.001 PMID:26287479

Root architecture and wind-firmness of mature Pinus pinaster.

PubMed

Danjon, Frédéric; Fourcaud, Thierry; Bert, Didier

2005-11-01

This study aims to link three-dimensional coarse root architecture to tree stability in mature timber trees with an average of 1-m rooting depth. Undamaged and uprooted trees were sampled in a stand damaged by a storm. Root architecture was measured by three-dimensional (3-D) digitizing. The distribution of root volume by root type and in wind-oriented sectors was analysed. Mature Pinus pinaster root systems were organized in a rigid 'cage' composed of a taproot, the zone of rapid taper of horizontal surface roots and numerous sinkers and deep roots, imprisoning a large mass of soil and guyed by long horizontal surface roots. Key compartments for stability exhibited strong selective leeward or windward reinforcement. Uprooted trees showed a lower cage volume, a larger proportion of oblique and intermediate depth horizontal roots and less wind-oriented root reinforcement. Pinus pinaster stability on moderately deep soils is optimized through a typical rooting pattern and a considerable structural adaptation to the prevailing wind and soil profile.

GLO-Roots: An imaging platform enabling multidimensional characterization of soil-grown root systems

DOE PAGES

Rellan-Alvarez, Ruben; Lobet, Guillaume; Lindner, Heike; ...

2015-08-19

Root systems develop different root types that individually sense cues from their local environment and integrate this information with systemic signals. This complex multi-dimensional amalgam of inputs enables continuous adjustment of root growth rates, direction, and metabolic activity that define a dynamic physical network. Current methods for analyzing root biology balance physiological relevance with imaging capability. To bridge this divide, we developed an integrated-imaging system called Growth and Luminescence Observatory for Roots (GLO-Roots) that uses luminescence-based reporters to enable studies of root architecture and gene expression patterns in soil-grown, light-shielded roots. We have developed image analysis algorithms that allow themore » spatial integration of soil properties, gene expression, and root system architecture traits. We propose GLO-Roots as a system that has great utility in presenting environmental stimuli to roots in ways that evoke natural adaptive responses and in providing tools for studying the multi-dimensional nature of such processes.« less

Identifying the optimal spatially and temporally invariant root distribution for a semiarid environment

NASA Astrophysics Data System (ADS)

Sivandran, Gajan; Bras, Rafael L.

2012-12-01

In semiarid regions, the rooting strategies employed by vegetation can be critical to its survival. Arid regions are characterized by high variability in the arrival of rainfall, and species found in these areas have adapted mechanisms to ensure the capture of this scarce resource. Vegetation roots have strong control over this partitioning, and assuming a static root profile, predetermine the manner in which this partitioning is undertaken.A coupled, dynamic vegetation and hydrologic model, tRIBS + VEGGIE, was used to explore the role of vertical root distribution on hydrologic fluxes. Point-scale simulations were carried out using two spatially and temporally invariant rooting schemes: uniform: a one-parameter model and logistic: a two-parameter model. The simulations were forced with a stochastic climate generator calibrated to weather stations and rain gauges in the semiarid Walnut Gulch Experimental Watershed (WGEW) in Arizona. A series of simulations were undertaken exploring the parameter space of both rooting schemes and the optimal root distribution for the simulation, which was defined as the root distribution with the maximum mean transpiration over a 100-yr period, and this was identified. This optimal root profile was determined for five generic soil textures and two plant-functional types (PFTs) to illustrate the role of soil texture on the partitioning of moisture at the land surface. The simulation results illustrate the strong control soil texture has on the partitioning of rainfall and consequently the depth of the optimal rooting profile. High-conductivity soils resulted in the deepest optimal rooting profile with land surface moisture fluxes dominated by transpiration. As we move toward the lower conductivity end of the soil spectrum, a shallowing of the optimal rooting profile is observed and evaporation gradually becomes the dominate flux from the land surface. This study offers a methodology through which local plant, soil, and climate can be accounted for in the parameterization of rooting profiles in semiarid regions.

How to study deep roots—and why it matters

PubMed Central

Maeght, Jean-Luc; Rewald, Boris; Pierret, Alain

2013-01-01

The drivers underlying the development of deep root systems, whether genetic or environmental, are poorly understood but evidence has accumulated that deep rooting could be a more widespread and important trait among plants than commonly anticipated from their share of root biomass. Even though a distinct classification of “deep roots” is missing to date, deep roots provide important functions for individual plants such as nutrient and water uptake but can also shape plant communities by hydraulic lift (HL). Subterranean fauna and microbial communities are highly influenced by resources provided in the deep rhizosphere and deep roots can influence soil pedogenesis and carbon storage.Despite recent technological advances, the study of deep roots and their rhizosphere remains inherently time-consuming, technically demanding and costly, which explains why deep roots have yet to be given the attention they deserve. While state-of-the-art technologies are promising for laboratory studies involving relatively small soil volumes, they remain of limited use for the in situ observation of deep roots. Thus, basic techniques such as destructive sampling or observations at transparent interfaces with the soil (e.g., root windows) which have been known and used for decades to observe roots near the soil surface, must be adapted to the specific requirements of deep root observation. In this review, we successively address major physical, biogeochemical and ecological functions of deep roots to emphasize the significance of deep roots and to illustrate the yet limited knowledge. In the second part we describe the main methodological options to observe and measure deep roots, providing researchers interested in the field of deep root/rhizosphere studies with a comprehensive overview. Addressed methodologies are: excavations, trenches and soil coring approaches, minirhizotrons (MR), access shafts, caves and mines, and indirect approaches such as tracer-based techniques. PMID:23964281

Liquid bridges at the root-soil interface

NASA Astrophysics Data System (ADS)

Carminati, Andrea; Benard, Pascal; Ahmed, Mutez; Zarebanadkouki, Mohsen

2017-04-01

The role of the root-soil interface on soil-plant water relations is unclear. Despite many experimental studies proved that the soil close to the root surface, the rhizosphere, has different properties compared to the adjacent bulk soil, the mechanisms underlying such differences are poorly understood and the implications for plant-water relations remain largely speculative. The objective of this contribution is to discuss the key elements affecting water dynamics in the rhizosphere. Special attention is dedicated to the role of mucilage exuded by roots in shaping the hydraulic properties of the rhizosphere. We identified three key properties: 1) mucilage adsorbs water decreasing its water potential; 2) mucilage decreases the surface tension of the soil solution; 3) mucilage increases the viscosity of the soil solution. These three properties determine the retention and spatial configuration of the liquid phase in porous media. The increase in viscosity and the decrease in surface tension (quantified by the Ohnesorge number) allow the persistence of long liquid filaments even at very negative water potentials. At high mucilage concentrations these filaments form a network that creates an additional matric potential and maintains the continuity of the liquid phase during drying. The biophysical interactions between mucilage and the pore space determine the physical properties of the rhizosphere. Mucilage forms a network that provides mechanical stability to soils upon drying and that maintains the continuity of the liquid phase across the soil-root interface. Such biophysical properties are functional to create an interconnected matrix that maintains the roots in contact with the soil, which is of particular importance when the soil is drying and the transpiration rate is high.

The Influence of Plant Root Systems on Subsurface Flow: Implications for Slope Stability

EPA Science Inventory

Although research has explained how plant roots mechanically stabilize soils, in this article we explore how root systems create networks of preferential flow and thus influence water pressures in soils to trigger landslides. Root systems may alter subsurface flow: Hydrological m...

The Practicalities of Crowdsourcing: Lessons from the Tea Bag Index - UK

NASA Astrophysics Data System (ADS)

Duddigan, Sarah; Alexander, Paul; Shaw, Liz; Collins, Chris

2017-04-01

The Tea Bag Index -UK is a collaborative project between the University of Reading and the Royal Horticultural Society (RHS), working with members of the gardening community as citizen scientists. This project aims to quantify how decomposition varies across the country, and whether decomposition is influenced by how gardeners manage their soil, particularly with respect to the application of compost. Launched in 2015 as part of a PhD project, the Tea Bag Index- UK project asks willing volunteers to bury tea bags in their gardens, as part of a large scale, litter bag style decomposition rate study. Over 450 sets of tea bags have been dispatched to participants, across the length and breadth of the UK. The group was largely recruited via social media, magazine articles and public engagement events and active discourse was undertaken with these citizen scientists using Facebook, Twitter and regular email communication. In order to run a successful crowdsourcing citizen science project there are number of stages that need to be considered including (but not limited to): planning; launch and recruitment; communications; and feedback. Throughout a project of this nature an understanding of the motivations of your volunteers is vital. Reflecting on these motivations while publicising the project, and communicating regularly with its participants is incredibly important for a successful project.

Human impacts on soil carbon dynamics of deep-rooted Amazonian forests

NASA Technical Reports Server (NTRS)

Nepstad, Daniel C.; Stone, Thomas A.; Davidson, Eric A.

1994-01-01

Deforestation and logging degrade more forest in eastern and southern Amazonia than in any other region of the world. This forest alteration affects regional hydrology and the global carbon cycle, but our current understanding of these effects is limited by incomplete knowledge of tropical forest ecosystems. It is widely agreed that roots are concentrated near the soil surface in moist tropical forests, but this generalization incorrectly implies that deep roots are unimportant in water and C budgets. Our results indicate that half of the closed-canopy forests of Brazilian Amazonic occur where rainfall is highly seasonal, and these forests rely on deeply penetrating roots to extract soil water. Pasture vegetation extracts less water from deep soil than the forest it replaces, thus increasing rates of drainage and decreasing rates of evapotranspiration. Deep roots are also a source of modern carbon deep in the soil. The soils of the eastern Amazon contain more carbon below 1 m depth than is present in above-ground biomass. As much as 25 percent of this deep soil C could have annual to decadal turnover times and may be lost to the atmosphere following deforestation. We compared the importance of deep roots in a mature, evergreen forest with an adjacent man-made pasture, the most common type of vegetation on deforested land in Amazonia. The study site is near the town of Paragominas, in the Brazilian state of Para, with a seasonal rainfall pattern and deeply-weathered, kaolinitic soils that are typical for large portions of Amazonia. Root distribution, soil water extraction, and soil carbon dynamics were studied using deep auger holes and shafts in each ecosystem, and the phenology and water status of the leaf canopies were measured. We estimated the geographical distribution of deeply-rooting forests using satellite imagery, rainfall data, and field measurements.

Quantitative mapping of solute accumulation in a soil-root system by magnetic resonance imaging

NASA Astrophysics Data System (ADS)

Haber-Pohlmeier, S.; Vanderborght, J.; Pohlmeier, A.

2017-08-01

Differential uptake of water and solutes by plant roots generates heterogeneous concentration distributions in soils. Noninvasive observations of root system architecture and concentration patterns therefore provide information about root water and solute uptake. We present the application of magnetic resonance imaging (MRI) to image and monitor root architecture and the distribution of a tracer, GdDTPA2- (Gadolinium-diethylenetriaminepentacetate) noninvasively during an infiltration experiment in a soil column planted with white lupin. We show that inversion recovery preparation within the MRI imaging sequence can quantitatively map concentrations of a tracer in a complex root-soil system. Instead of a simple T1 weighting, the procedure is extended by a wide range of inversion times to precisely map T1 and subsequently to cover a much broader concentration range of the solute. The derived concentrations patterns were consistent with mass balances and showed that the GdDTPA2- tracer represents a solute that is excluded by roots. Monitoring and imaging the accumulation of the tracer in the root zone therefore offers the potential to determine where and by which roots water is taken up.

Phenolic root exudate and tissue compounds vary widely among temperate forest tree species and have contrasting effects on soil microbial respiration.

PubMed

Zwetsloot, Marie J; Kessler, André; Bauerle, Taryn L

2018-04-01

Root-soil interactions fundamentally affect the terrestrial carbon (C) cycle and thereby ecosystem feedbacks to climate change. This study addressed the question of whether the secondary metabolism of different temperate forest tree species can affect soil microbial respiration. We hypothesized that phenolics can both increase and decrease respiration depending on their function as food source, mobilizer of other soil resources, signaling compound, or toxin. We analyzed the phenolic compounds from root exudates and root tissue extracts of six tree species grown in a glasshouse using high-performance liquid chromatography. We then tested the effect of individual phenolic compounds, representing the major identified phenylpropanoid compound classes, on microbial respiration through a 5-d soil incubation. Phenolic root profiles were highly species-specific. Of the eight classes identified, flavonoids were the most abundant, with flavanols being the predominating sub-class. Phenolic effects on microbial respiration ranged from a 26% decrease to a 46% increase, with reduced respiration occurring in the presence of compounds possessing a catechol ring. Tree species variation in root phenolic composition influences the magnitude and direction of root effects on microbial respiration. Our data support the hypothesis that functional group rather than biosynthetic class determines the root phenolic effect on soil C cycling. © 2018 The Authors. New Phytologist © 2018 New Phytologist Trust.

[Effects of Chinese onion' s root exudates on cucumber seedlings growth and rhizosphere soil microorganisms].

PubMed

Yang, Yang; Liu, Shou-wei; Pan, Kai; Wu, Feng-zhi

2013-04-01

Taking the Chinese onion cultivars with different allelopathy potentials as the donor and cucumber as the accepter, this paper studied the effects of Chinese onion' s root exudates on the seedlings growth of cucumber and the culturable microbial number and bacterial community structure in the seedlings rhizosphere soil. The root exudates of the Chinese onion cultivars could promote the growth of cucumber seedlings, and the stimulatory effect increased with the increasing concentration of the root exudates. However, at the same concentrations of root exudates, the stimulatory effect had no significant differences between the Chinese onion cultivars with strong and weak allelopathy potential. The root exudates of the Chinese onion cultivars increased the individual numbers of bacteria and actinomyces but decreased those of fungi and Fusarium in rhizosphere soil, being more significant for the Chinese onion cultivar with high allelopathy potential (L-06). The root exudates of the Chinese onion cultivars also increased the bacterial community diversity in rhizosphere soil. The cloning and sequencing results indicated that the differential bacteria bands were affiliated with Actinobacteria, Proteobacteria, and Anaerolineaceae, and Anaerolineaceae only occurred in the rhizosphere soil in the treatment of high allelopathy potential Chinese onion (L-06). It was suggested that high concentration (10 mL per plant) of root exudates from high allelopathy potential Chinese onion (L-06) could benefit the increase of bacterial community diversity in cucumber seedlings rhizosphere soil.

Assessing the applicability of the earth impedance method for in situ studies of tree root systems

PubMed Central

Urban, Josef; Bequet, Raphael; Mainiero, Raphael

2011-01-01

Several electrical methods have been introduced as non-invasive techniques to overcome the limited accessibility to root systems. Among them, the earth impedance method (EIM) represents the most recent development. Applying an electrical field between a cormus and the rooted soil, the EIM measures the absorptive root surface area (ARSA) from grounding resistance patterns. Allometric relationships suggested that this method was a valuable tool. Crucial assumptions for the applicability of the EIM, however, have not been tested experimentally. Focusing on tree root systems, the present study assesses the applicability of the EIM. Six hypotheses, deduced from the EIM approach, were tested in several experiments and the results were compared with conventional methods. None of the hypotheses could be verified and the results allow two major conclusions. First, in terms of an analogue electrical circuit, a tree-root–soil continuum appears as a serial circuit with xylem and soil resistance being the dominant components. Allometric variation in contact resistance, with the latter being the proxy for root surface area, are thus overruled by the spatial and seasonal variation of soil and xylem resistances. Second, in a tree-root–soil continuum, distal roots conduct only a negligible portion of the electric charge. Most of charge carriers leave the root system in the proximal parts of the root–soil interface. PMID:21273337

Measuring the response of conifer seedlings to soil compaction stress

Treesearch

Howard G. Halverson; Robert P. Zisa

1982-01-01

A test of seedling growth response to several levels of soil compaction showed that root penetration depth was best correlated with soil compaction. Shoot biomass, root biomass, root elongation, and seedling height were not well correlated with compaction. The results reveal that most measurements of growth do not give a good indication of seedling response to stresses...

Underground tuning: quantitative regulation of root growth.

PubMed

Satbhai, Santosh B; Ristova, Daniela; Busch, Wolfgang

2015-02-01

Plants display a high degree of phenotypic plasticity that allows them to tune their form and function to changing environments. The plant root system has evolved mechanisms to anchor the plant and to efficiently explore soils to forage for soil resources. Key to this is an enormous capacity for plasticity of multiple traits that shape the distribution of roots in the soil. Such root system architecture-related traits are determined by root growth rates, root growth direction, and root branching. In this review, we describe how the root system is constituted, and which mechanisms, pathways, and genes mainly regulate plasticity of the root system in response to environmental variation. © The Author 2015. Published by Oxford University Press on behalf of the Society for Experimental Biology. All rights reserved. For permissions, please email: journals.permissions@oup.com.

Predicting root zone soil moisture with soil properties and satellite near-surface moisture data across the conterminous United States

NASA Astrophysics Data System (ADS)

Baldwin, D.; Manfreda, S.; Keller, K.; Smithwick, E. A. H.

2017-03-01

Satellite-based near-surface (0-2 cm) soil moisture estimates have global coverage, but do not capture variations of soil moisture in the root zone (up to 100 cm depth) and may be biased with respect to ground-based soil moisture measurements. Here, we present an ensemble Kalman filter (EnKF) hydrologic data assimilation system that predicts bias in satellite soil moisture data to support the physically based Soil Moisture Analytical Relationship (SMAR) infiltration model, which estimates root zone soil moisture with satellite soil moisture data. The SMAR-EnKF model estimates a regional-scale bias parameter using available in situ data. The regional bias parameter is added to satellite soil moisture retrievals before their use in the SMAR model, and the bias parameter is updated continuously over time with the EnKF algorithm. In this study, the SMAR-EnKF assimilates in situ soil moisture at 43 Soil Climate Analysis Network (SCAN) monitoring locations across the conterminous U.S. Multivariate regression models are developed to estimate SMAR parameters using soil physical properties and the moderate resolution imaging spectroradiometer (MODIS) evapotranspiration data product as covariates. SMAR-EnKF root zone soil moisture predictions are in relatively close agreement with in situ observations when using optimal model parameters, with root mean square errors averaging 0.051 [cm3 cm-3] (standard error, s.e. = 0.005). The average root mean square error associated with a 20-fold cross-validation analysis with permuted SMAR parameter regression models increases moderately (0.082 [cm3 cm-3], s.e. = 0.004). The expected regional-scale satellite correction bias is negative in four out of six ecoregions studied (mean = -0.12 [-], s.e. = 0.002), excluding the Great Plains and Eastern Temperate Forests (0.053 [-], s.e. = 0.001). With its capability of estimating regional-scale satellite bias, the SMAR-EnKF system can predict root zone soil moisture over broad extents and has applications in drought predictions and other operational hydrologic modeling purposes.

[Effects of soil pH on the competitive uptake of amino acids by maize and microorganisms].

PubMed

Ma, Qing Xu; Wang, Jun; Cao, Xiao Chuang; Sun, Yan; Sun, Tao; Wu, Liang Huan

2017-07-18

Organic nitrogen can play an important role in plant growth, and soil pH changed greatly due to the over-use of chemical fertilizers, but the effects of soil pH on the competitive uptake of amino acids by plants and rhizosphere microorganisms are lack of detailed research. To study the effects of soil pH on the uptake of amino acids by maize and soil microorganisms, two soils from Hangzhou and Tieling were selected, and the soil pH was changed by the electrokinesis, then the 15 N-labeled glycine was injected to the centrifuge tube with a short-term uptake of 4 h. Soil pH had a significant effect on the shoot and root biomass, and the optimal pH for maize shoot growth was 6.48 for Hangzhou red soil, while it was 7.65 for Tieling brown soil. For Hangzhou soil, the 15 N abundance of maize shoots under pH=6.48 was significantly higher than under other treatments, and the uptake amount of 15 N-glycine was also much higher. However, the 15 N abundance of maize shoots and roots under pH=7.65 Tieling soil was significantly lower than it under pH=5.78, but the uptake amount of 15 N-glycine under pH=7.65 was much higher. The microbial biomass C was much higher in pH=6.48 Hangzhou soil, while it was much lower in pH=7.65 Tieling soil. According to the results of root uptake, root to shoot transportation, and the competition with microorganisms, we suggested that although facing the fierce competition with microorganisms, the maize grown in pH=6.48 Hangzhou soil increased the uptake of glycine by increasing its root uptake and root to shoot transportation. While in pH=7.65 Tieling soil, the activity of microorganisms was decreased, which decreased the competition with maize for glycine, and increased the uptake of glycine by maize.

A novel Brassica-rhizotron system to unravel the dynamic changes in root system architecture of oilseed rape under phosphorus deficiency.

PubMed

Yuan, Pan; Ding, Guang-Da; Cai, Hong-Mei; Jin, Ke-Mo; Broadley, Martin Roger; Xu, Fang-Sen; Shi, Lei

2016-08-01

An important adaptation of plants to phosphorus (P) deficiency is to alter root system architecture (RSA) to increase P acquisition from the soil, but soil-based observations of RSA are technically challenging, especially in mature plants. The aim of this study was to investigate the root development and RSA of oilseed rape (Brassica napus L.) under low and high soil P conditions during an entire growth cycle. A new large Brassica-rhizotron system (approx. 118-litre volume) was developed to study the RSA dynamics of B. napus 'Zhongshuang11' in soils, using top-soils supplemented with low P (LP) or high P (HP) for a full plant growth period. Total root length (TRL), root tip number (RTN), root length density (RLD), biomass and seed yield traits were measured. TRL and RTN increased more rapidly in HP than LP plants from seedling to flowering stages. Both traits declined from flowering to silique stages, and then increased slightly in HP plants; in contrast, root senescence was observed in LP plants. RSA parameters measured from the polycarbonate plates were empirically consistent with analyses of excavated roots. Seed yield and shoot dry weights were closely associated positively with root dry weights, TRL, RLD and RTN at both HP and LP. The Brassica-rhizotron system is an effective method for soil-based root phenotyping across an entire growth cycle. Given that root senescence is likely to occur earlier under low P conditions, crop P deficiency is likely to affect late water and nitrogen uptake, which is critical for efficient resource use and optimal crop yields. © The Author 2016. Published by Oxford University Press on behalf of the Annals of Botany Company. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Deformational mass transport and invasive processes in soil evolution

NASA Technical Reports Server (NTRS)

Brimhall, George H.; Chadwick, Oliver A.; Lewis, Chris J.; Compston, William; Williams, Ian S.; Danti, Kathy J.; Dietrich, William E.; Power, Mary E.; Hendricks, David; Bratt, James

1992-01-01

Channels left in soil by decayed roots and burrowing animals allow organic and inorganic precipitates and detritus to move through soil from above, to depths at which the minuteness of pores restricts further passage. Consecutive translocation-and-root-growth phases stir the soil, constituting an invasive, dilatational process which generates cumulative strains. Below the depths thus affected, mineral dissolution by descending organic acids leads to internal collapse; this softened/condensed precursor horizon is then transformed into soil via biological activity that mixes and expands the evolving residuum through root and micropore-network invasion.

In situ silicone tube microextraction: a new method for undisturbed sampling of root-exuded thiophenes from marigold (Tagetes erecta L.) in soil.

PubMed

Mohney, Brian K; Matz, Tricia; Lamoreaux, Jessica; Wilcox, David S; Gimsing, Anne Louise; Mayer, Philipp; Weidenhamer, Jeffrey D

2009-11-01

The difficulties of monitoring allelochemical concentrations in soil and their dynamics over time have been a major barrier to testing hypotheses of allelopathic effects. Here, we evaluate three diffusive sampling strategies that employ polydimethylsiloxane (PDMS) sorbents to map the spatial distribution and temporal dynamics of root-exuded thiophenes from the African marigold, Tagetes erecta. Solid phase root zone extraction (SPRE) probes constructed by inserting stainless steel wire into PDMS tubing were used to monitor thiophene concentrations at various depths beneath marigolds growing in PVC pipes. PDMS sheets were used to map the distribution of thiophenes beneath marigolds grown in thin glass boxes. Concentrations of the two major marigold thiophenes measured by these two methods were extremely variable in both space and time. Dissection and analysis of roots indicated that distribution of thiophenes in marigold roots also was quite variable. A third approach used 1 m lengths of PDMS microtubing placed in marigold soil for repeated sampling of soil without disturbance of the roots. The two ends of the tubing remained out of the soil so that solvent could be washed through the tubing to collect samples for HPLC analysis. Unlike the other two methods, initial experiments with this approach show more uniformity of response, and suggest that soil concentrations of marigold thiophenes are affected greatly even by minimal disturbance of the soil. Silicone tube microextraction gave a linear response for alpha-terthienyl when maintained in soils spiked with 0-10 ppm of this thiophene. This method, which is experimentally simple and uses inexpensive materials, should be broadly applicable to the measurement of non-polar root exudates, and thus provides a means to test hypotheses about the role of root exudates in plant-plant and other interactions.

Biological subsoil management: new insights into processes of structure building and implications for crop growth

NASA Astrophysics Data System (ADS)

Athmann, Miriam; Kautz, Timo; Köpke, Ulrich

2017-04-01

Large sized continuous biopores (diameter > 2 mm) in arable subsoils can contribute to enhance soil aeration, increase water infiltration, reduce water runoff and serve as preferential pathways for root growth. Biopores can be generated by taproots, but these pores probably have limited physical stability unless they are colonized by anecic earthworms and coated with worm cast. Long-term field experiments have shown that populations of anecic earthworms and numbers of biopores are promoted by perennial fodder cropping, no-till cropping and reduced tillage systems, i.e. extended soil rest. Potential effects of biopores on root growth of annual crops include accelerating access to deep soil layers, facilitating exploitation of water while simultaneously allowing nutrient acquisition from the pore wall and the bulk soil. Biopores can be considered as hot spots for nutrient acquisition of crops, especially when the pore wall is enriched in nutrients as a consequence of deposition of decaying plant material and feces of earthworms. However, the extent of such effects largely depends on physical properties of the bulk soil. Preferential root growth through biopores has been observed in many types of subsoil. The role of biopores is expected to be relevant especially when rooting in the bulk soil is impeded by high penetration resistance. Nevertheless, in hard-setting clay soils clumping of roots has been reported, when roots were unable to re-enter the bulk soil from biopores' lumen. Recent field experiments on a deep loamy Haplic Luvisol indicated increased biopore density in the subsoil promoting root growth of winter cereals and winter oilseed rape not necessarily resulting in significant effects on shoot parameters. Nevertheless, in a dry year increased biopore density had beneficial effects on N uptake, root and shoot growth and grain yield of spring crops.

Linking Belowground Plant Traits With Ecosystem Processes: A Multi-Biome Perspective

NASA Astrophysics Data System (ADS)

Iversen, C. M.; Norby, R. J.; Childs, J.; McCormack, M. L.; Walker, A. P.; Hanson, P. J.; Warren, J.; Sloan, V. L.; Sullivan, P. F.; Wullschleger, S.; Powell, A. S.

2015-12-01

Fine plant roots are short-lived, narrow-diameter roots that play an important role in ecosystem carbon, water, and nutrient cycling in biomes ranging from the tundra to the tropics. Root ecologists make measurements at a millimeter scale to answer a question with global implications: In response to a changing climate, how do fine roots modulate the exchange of carbon between soils and the atmosphere and how will this response affect our future climate? In a Free-Air CO2 Enrichment experiment in Oak Ridge, TN, elevated [CO2] caused fine roots to dive deeper into the soil profile in search of limiting nitrogen, which led to increased soil C storage in deep soils. In contrast, the fine roots of trees and shrubs in an ombrotrophic bog are constrained to nutrient-poor, oxic soils above the average summer water table depth, though this may change with warmer, drier conditions. Tundra plant species are similarly constrained to surface organic soils by permafrost or waterlogged soils, but have many adaptations that alter ecosystem C fluxes, including aerenchyma that oxygenate the rhizosphere but also allow direct methane flux to the atmosphere. FRED, a global root trait database, will allow terrestrial biosphere models to represent the complexity of root traits across the globe, informing both model representation of ecosystem C and nutrient fluxes, but also the gaps where measurements are needed on plant-soil interactions (for example, in the tropical biome). While the complexity of mm-scale measurements may never have a place in large-scale global models, close collaboration between empiricists and modelers can help to guide the scaling of important, yet small-scale, processes to quantify their important roles in larger-scale ecosystem fluxes.

The effectiveness of surface liming in ameliorating the phytotoxic effects of soil contaminated by copper acid leach pad solution in an arid ecosystem

NASA Astrophysics Data System (ADS)

Golos, Peter

2016-04-01

Revegetation of sites following soil contamination can be challenging especially in identifying the most effective method for ameliorating phytotoxic effects in arid ecosystems. This study at a copper mine in the Great Sandy Desert of Western Australia investigated vegetation restoration of a site contaminated by acid (H2SO4) leach pad solution. Elevated soil copper at low soil pH is phytotoxic to plant roots inhibiting root elongation. In arid ecosystems where rapid root growth is crucial for seedling survival post germination physical or chemical barriers to root growth need to be identified and ameliorated. Initial attempt at rehabilitation of contaminated site with hydrated lime (CaOH2) at 2 tonnes/ha followed by ripping to 30 cm depth then seeding was ineffective as successful seedling emergence was followed by over 90% seedling mortality which was 10-fold greater than seedling mortality in an uncontaminated reference site. High mortality was attributed to seedling roots being impededed as soil water was more than 3-fold greater at 5 to 40 cm depth in contaminated site than reference site. In response to high seedling mortality after emergence test pits were dug to 1 m deep to collect soil samples at 10 cm intervals for phytotoxicity testing and to measure soil pH-CaCl2, copper (DPTA ion extraction), electrical conductivity and gravimetric water content in three replicate pits at three replicate sites. Also, soil impedance was measured down the soil profile at 5 cm intervals at six replicate points/pit. For phytotoxicity testing soil samples were placed into three replicate plastic pots/sample and seeded with 10 seeds of Avena sativa and watered daily. Seedlings were harvested after at least two weeks after seedling emergence and rooting depth in pots measured. There was no difference in seedling emergence and survival of seedlings between contaminated and uncontaminated soil samples however mean seedling root growth was significantly lower in soil samples collected at >10 cm depth than the control. Mean soil pH at 0-10 cm was higher (>7.2) at all sites treated with lime compared to uncontaminated soil (5.5). At depths greater than 10 cm soil pH was <4.6. Soil copper was >16 mg/kg in all contaminated soil samples compared to 0.5 mg/kg in control. High seedling mortality in contaminated site is attributed to low soil pH and elevated soil copper levels which inhibited plant root growth and hence access to soil water. While surface liming of soil increased soil pH ameliorating the effect of elevated soil copper, this was only effective in the top 10 cm due to low solubility of hydrated lime. To improve seedling survival lime will need to be incorporated into the contaminated soil profile to allow plants to access soil water at depth. This study highlights the importance of the need to assess the phytotoxic effects of soil contamination and the effectiveness of amelioration treatments and with proper reference to its ecological context. To improve the success of vegetation restoration of sites contaminated with acidic copper solution, lime needs to be incorporated into the contaminated soil profile to allow plant roots to access soil water at depth. This study highlights the importance of the need to assess the phytotoxic effects of soil contamination and the effectiveness of amelioration treatments and with proper reference to its ecological context.

Ecological distribution of Spirillum lipoferum Beijerinck.

PubMed

Dobereiner, J; Marriel, I E; Nery, M

1976-10-01

A survey in various countries revealed that the N2-fixing Spirillum lipoferum Beijerinck is a very common root and soil inhabitant in the tropics. More than half of the grass root and soil samples collected in tropical countries (four African countries and Brazil) contained abundant S. lipoferum populations, while less than 10% of the samples collected in temperate South Brazil, Kenya, and the U.S.A. contained the organism. There is a pronounced vegetation effect. Panicum maximum seems the most favorable among the forage grasses, while few positive samples were found under virgin tropical forest. Legume roots contained less S. lipoferum than adjacent soils. More than 80% of the samples from cereal roots (maize, sorghum, wheat, and rye) grown in fields fertilized with PK and Mo, in Rio de Janeiro State, were positive. Maize and sorghum grown under similar conditions in Wisconsin contained less than 10% of positive samples, but when maize fields were inoculated 90% of the root samples contained S. lipoferum. Alluvial soils were more favorable than eroded hill soils. Occurrence in soil was strongly pH-dependent with a pH around 7, being optimal (correlation coefficient r = 0.90). Sporadic occurrence was observed even in soils with pH 4.8. Surface-sterilized P. maximum roots collected from soils with pH ranging from 4.8 to 7.2 contained high S. lipoferum numbers which did not correlate with soil pH (r = 0.41). Amendment with malate of acid soils was not very effective in increasing nitrogenase (N2-ase) activity, but in two soils with pH above 6.4, high N2-ase activity was obtained after 16 to 48 h of incubation. In two soils from a temperate climate region, inoculation with S. lipoferum increased N2-ase activity produced through malate amendment.

Growth and Cd uptake by rice (Oryza sativa) in acidic and Cd-contaminated paddy soils amended with steel slag.

PubMed

He, Huaidong; Tam, Nora F Y; Yao, Aijun; Qiu, Rongliang; Li, Wai Chin; Ye, Zhihong

2017-12-01

Contamination of rice (Oryza sativa) by Cd is of great concern. Steel slag could be used to amend Cd-contaminated soils and make them safe for cereal production. This work was conducted to study the effects of steel slag on Cd uptake and growth of rice plants in acidic and Cd-contaminated paddy soils and to determine the possible mechanisms behind these effects. Pot (rhizobag) experiments were conducted using rice plants grown on two acidic and Cd-contaminated paddy soils with or without steel slag amendment. Steel slag amendment significantly increased grain yield by 36-45% and root catalase activity, and decreased Cd concentrations in brown rice by 66-77% compared with the control, in both soils. Steel slag amendment also markedly decreased extractable soil Cd, Cd concentrations in pore-water and Cd translocation from roots to above-ground parts. It also significantly increased soil pH, extractable Si and Ca in soils and Ca concentrations in roots. Significant positive correlations were found between extractable soil Cd and Cd concentrations in rice tissues, but it was negatively correlated with soil pH and extractable Si. Calcium in root tissues significantly and negatively correlated with Cd translocation factors from roots to straw. Overall, steel slag amendment not only significantly promoted rice growth but decreased Cd accumulation in brown rice. These benefits appear to be related to improvements in soil conditions (e.g. increasing pH, extractable Si and Ca), a reduction in extractable soil Cd, and suppression of Cd translocation from roots to above-ground parts. Copyright © 2017 Elsevier Ltd. All rights reserved.

Fusarium spp. and Pinus strobus seedlings: root disease pathogens and taxa associated with seed

Treesearch

C. M. Ocamb; J. Juzwik; F. B. Martin

2002-01-01

Eastern white pine (Pinus strobus L .) seeds were sown in soil infested wlth Fusarium proliferatum, root necrosis developed on seedling roots, and F. proliferatum as reisolated from symptomatic roots; thus, demonstrating that F. proliferatum is pathogenic to eastern white pine seedling. Soils...

Impact of root growth and root hydraulic conductance on water availability of young walnut trees

NASA Astrophysics Data System (ADS)

Jerszurki, Daniela; Couvreur, Valentin; Hopmans, Jan W.; Silva, Lucas C. R.; Shackel, Kenneth A.; de Souza, Jorge L. M.

2015-04-01

Walnut (Juglans regia L.) is a tree species of high economic importance in the Central Valley of California. This crop has particularly high water requirements, which makes it highly dependent on irrigation. The context of decreasing water availability in the state calls for efficient water management practices, which requires improving our understanding of the relationship between water application and walnut water availability. In addition to the soil's hydraulic conductivity, two plant properties are thought to control the supply of water from the bulk soil to the canopy: (i) root distribution and (ii) plant hydraulic conductance. Even though these properties are clearly linked to crop water requirements, their quantitative relation remains unclear. The aim of this study is to quantitatively explain walnut water requirements under water deficit from continuous measurements of its water consumption, soil and stem water potential, root growth and root system hydraulic conductance. For that purpose, a greenhouse experiment was conducted for a two month period. Young walnut trees were planted in transparent cylindrical pots, equipped with: (i) rhizotron tubes, which allowed for non-invasive monitoring of root growth, (ii) pressure transducer tensiometers for soil water potential, (iii) psychrometers attached to non-transpiring leaves for stem water potential, and (iv) weighing scales for plant transpiration. Treatments consisted of different irrigation rates: 100%, 75% and 50% of potential crop evapotranspiration. Plant responses were compared to predictions from three simple process-based soil-plant-atmosphere models of water flow: (i) a hydraulic model of stomatal regulation based on stem water potential and vapor pressure deficit, (ii) a model of plant hydraulics predicting stem water potential from soil-root interfaces water potential, and (iii) a model of soil water depletion predicting the water potential drop between the bulk soil and soil-root interfaces. These models were combined to a global optimization algorithm to obtain parameters that best fit the observed soil-plant-atmosphere water dynamics. Eventually, relations between root system conductance and growth as well as water access strategies were quantitatively analyzed.

Root architecture impacts on root decomposition rates in switchgrass

NASA Astrophysics Data System (ADS)

de Graaff, M.; Schadt, C.; Garten, C. T.; Jastrow, J. D.; Phillips, J.; Wullschleger, S. D.

2010-12-01

Roots strongly contribute to soil organic carbon accrual, but the rate of soil carbon input via root litter decomposition is still uncertain. Root systems are built up of roots with a variety of different diameter size classes, ranging from very fine to very coarse roots. Since fine roots have low C:N ratios and coarse roots have high C:N ratios, root systems are heterogeneous in quality, spanning a range of different C:N ratios. Litter decomposition rates are generally well predicted by litter C:N ratios, thus decomposition of roots may be controlled by the relative abundance of fine versus coarse roots. With this study we asked how root architecture (i.e. the relative abundance of fine versus coarse roots) affects the decomposition of roots systems in the biofuels crop switchgrass (Panicum virgatum L.). To understand how root architecture affects root decomposition rates, we collected roots from eight switchgrass cultivars (Alamo, Kanlow, Carthage, Cave-in-Rock, Forestburg, Southlow, Sunburst, Blackwell), grown at FermiLab (IL), by taking 4.8-cm diameter soil cores from on top of the crown and directly next to the crown of individual plants. Roots were carefully excised from the cores by washing and analyzed for root diameter size class distribution using WinRhizo. Subsequently, root systems of each of the plants (4 replicates per cultivar) were separated in 'fine' (0-0.5 mm), 'medium' (0.5-1 mm) and 'coarse' roots (1-2.5 mm), dried, cut into 0.5 cm (medium and coarse roots) and 2 mm pieces (fine roots), and incubated for 90 days. For each of the cultivars we established five root-treatments: 20g of soil was amended with 0.2g of (1) fine roots, (2) medium roots, (3) coarse roots, (4) a 1:1:1 mixture of fine, medium and coarse roots, and (5) a mixture combining fine, medium and coarse roots in realistic proportions. We measured CO2 respiration at days 1, 3, 7, 15, 30, 60 and 90 during the experiment. The 13C signature of the soil was -26‰, and the 13C signature of plants was -12‰, enabling us to differentiate between root-derived C and native SOM-C respiration. We found that the relative abundance of fine, medium and coarse roots were significantly different among cultivars. Root systems of Alamo, Kanlow and Cave-in-Rock were characterized by a large abundance of coarse-, relative to fine roots, whereas Carthage, Forestburg and Blackwell had a large abundance of fine, relative to coarse roots. Fine roots had a 28% lower C:N ratio than medium and coarse roots. These differences led to different root decomposition rates. We conclude that root architecture should be taken into account when predicting root decomposition rates; enhanced understanding of the mechanisms of root decomposition will improve model predictions of C input to soil organic matter.

Annual fire and mowing alter biomass, depth distribution, and C and N content of roots in soil in tallgrass prairie

Treesearch

D.J. Kitchen; J.M. Blair; M.A. Callaham

2009-01-01

Management practices, such as fire andmowing, can affect the distribution and quality of roots and soil C and N in grasslands. We examined long-term (13 years) effects of annual fire and mowing on fine (<2 mm) roots and soil C and N content in a native tallgrass prairie at Konza Prairie Biological Station in northeastern Kansas, USA. Using 90 cm deep soil cores...

Combining Neutron and Magnetic Resonance Imaging to Study the Interaction of Plant Roots and Soil

NASA Astrophysics Data System (ADS)

Oswald, Sascha E.; Tötzke, Christian; Haber-Pohlmeier, Sabina; Pohlmeier, Andreas; Kaestner, Anders P.; Lehmann, Eberhard

The soil in direct vicinity of the roots, the root-soil interface or so called rhizosphere, is heavily modified by the activity of roots, compared to bulk soil, e.g. in respect to microbiology and soil chemistry. It has turned out that the root-soil interface, though small in size, also plays a decisive role in the hydraulics controlling the water flow from bulk soil into the roots. A promising approach for the non-invasive investigation of water dynamics, water flow and solute transport is the combination of the two imaging techniques magnetic resonance imaging (MRI) and neutron imaging (NI). Both methods are complementary, because NI maps the total proton density, possibly amplified by NI tracers, which usually corresponds to total water content, and is able to detect changes and spatial patterns with high resolution. On the other side, nuclear magnetic resonance relaxation times reflect the interaction between fluid and matrix, while also a mapping of proton spin density and thus water content is possible. Therefore MRI is able to classify different water pools via their relaxation times additionally to the water distribution inside soil as a porous medium. We have started such combined measurements with the approach to use the same samples and perform tomography with each imaging method at different location and short-term sample transfer.

Water management impacts on arsenic speciation and iron-reducing bacteria in contrasting rice-rhizosphere compartments.

PubMed

Somenahally, Anil C; Hollister, Emily B; Yan, Wengui; Gentry, Terry J; Loeppert, Richard H

2011-10-01

Rice cultivated on arsenic (As) contaminated-soils will accumulate variable grain-As concentrations, as impacted by varietal differences, soil variables, and crop management. A field-scale experiment was conducted to study the impact of intermittent and continuous flooding on As speciation and microbial populations in rice rhizosphere compartments of soils that were either historically amended with As pesticide or unamended with As. Rhizosphere-soil, root-plaque, pore-water and grain As were quantified and speciated, and microbial populations in rhizosphere soil and root-plaque were characterized. Total-As concentrations in rhizosphere and grain were significantly lower in intermittently flooded compared to the continuously flooded plots (86% lower in pore-water, 55% lower in root-plaque and 41% lower in grain samples). iAs(V), iAs(III), and DMAs(V) were the predominant As species detected in rhizosphere-soil and root-plaque, pore-water and grain samples, respectively. Relative proportions of Archaea and iron-reducing bacteria (FeRB) were higher in rhizosphere soil compared to root-plaque. In rhizosphere soil, the relative abundance of FeRB was lower in intermittently flooded compared to continuously flooded plots, but there were no differences between root-plaque samples. This study has demonstrated that reductions in dissolved As concentrations in the rhizosphere and subsequent decreases in grain-As concentration can be attained through water management.

Root controls on soil microbial community structure in forest soils.

PubMed

Brant, Justin B; Myrold, David D; Sulzman, Elizabeth W

2006-07-01

We assessed microbial community composition as a function of altered above- and belowground inputs to soil in forest ecosystems of Oregon, Pennsylvania, and Hungary as part of a larger Detritus Input and Removal Treatment (DIRT) experiment. DIRT plots, which include root trenching, aboveground litter exclusion, and doubling of litter inputs, have been established in forested ecosystems in the US and Europe that vary with respect to dominant tree species, soil C content, N deposition rate, and soil type. This study used phospholipid fatty-acid (PLFA) analysis to examine changes in the soil microbial community size and composition in the mineral soil (0-10 cm) as a result of the DIRT treatments. At all sites, the PLFA profiles from the plots without roots were significantly different from all other treatments. PLFA analysis showed that the rootless plots generally contained larger quantities of actinomycete biomarkers and lower amounts of fungal biomarkers. At one of the sites in an old-growth coniferous forest, seasonal changes in PLFA profiles were also examined. Seasonal differences in soil microbial community composition were greater than treatment differences. Throughout the year, treatments without roots continued to have a different microbial community composition than the treatments with roots, although the specific PLFA biomarkers responsible for these differences varied by season. These data provide direct evidence that root C inputs exert a large control on microbial community composition in the three forested ecosystems studied.

Phytoremediation of soils contaminated by cadmium

NASA Astrophysics Data System (ADS)

Watai, H.; Miyazaki, T.; Fujikawa, T.; Mizoguchi, M.

2004-12-01

Phytoremediation is a technique to clean up soils contaminated with heavy metals. Advantages of this method are that (1) This technique is suitable to cleanup soils slightly contaminated with heavy metals in relatively wide area. (2) The expense for clean up is lower than civil engineering techniques. (3) This method can remove heavy metals fundamentally from contaminated. (4) The heavy metals are able to recycle by ashing of plants. Many researches have been done on the phytoremediation up to now, but almost all these researches were devoted to clarify the phytoremediation from the view point of plants themselves. However, few efforts have been devoted to analyze the migrations of heavy metals in soils during the phytoremediation process. The objective of this study is to clarify the features of Cd migration when plant roots are absorbing Cd from the ambient soils. Especially, we focused on finding the Cd migration pattern by changing the soil condition such as plant growing periods, planting densities, and the initial Cd concentration in soils. We planted sunflowers in columns filled with Cd contaminated soils because sunflower is a well-known hyperaccumulator of Cd from soils. By cutting the shoots of plants at the soil surface, and by keeping the plant roots in the soils without disturbance, the Cd concentrations, moisture contents, pH distributions, EC distributions, and dry weight of residual roots in the soils were carefully analyzed. The experimental results showed that (1)The growth of the planted sunflowers were suffered by applying of Cd. (2)The decrease of suction was affected by water uptake by roots at the depth from 0 to 5 cm. Water contents with plants in soils decrease more than without plants. (3)Cd adsorption by roots was predominant within 5cm from soil surface. In addition, it was also shown that there was an optimal Cd concentration where Cd is most effectively adsorbed by the plant. In this experiment we found that 40 to 60 mg kg-1 was the optimal concentration. By a trial calculation, it was revealed that more than 30 times of planting-cultivating processes were needed to decrease the Cd concentration from 9.75 to 0.4 mg Cd kg-1. When the sunflower was not planted, Cd did not move in the soils even when the soil water the sunflower was planted, Cd in the soil moved toward the plant roots associating with the water uptake by the roots. This Cd movement may have enhanced by the secretion of organic acid from plant roots.

Impact of roots, mycorrhizas and earthworms on soil physical properties as assessed by shrinkage analysis

NASA Astrophysics Data System (ADS)

Milleret, R.; Le Bayon, R.-C.; Lamy, F.; Gobat, J.-M.; Boivin, P.

2009-07-01

SummarySoil biota such as earthworms, arbuscular mycorrhizal fungi (AMF) and plant roots are known to play a major role in engineering the belowground part of the terrestrial ecosystems, thus strongly influencing the water budget and quality on earth. However, the effect of soil organisms and their interactions on the numerous soil physical properties to be considered are still poorly understood. Shrinkage analysis allows quantifying a large spectrum of soil properties in a single experiment, with small standard errors. The objectives of the present study were, therefore, to assess the ability of the method to quantify changes in soil properties as induced by single or combined effects of leek roots ( Allium porrum), AMF ( Glomus intraradices) and earthworms ( Allolobophora chlorotica). The study was performed on homogenised soil microcosms and the experiments lasted 35 weeks. The volume of the root network and the external fungal hyphae was measured at the end, and undisturbed soil cores were collected. Shrinkage analysis allowed calculating the changes in soil hydro-structural stability, soil plasma and structural pore volumes, soil bulk density and plant available water, and structural pore size distributions. Data analysis revealed different impacts of the experimented soil biota on the soil physical properties. At any water content, the presence of A. chlorotica resulted in a decrease of the specific bulk volume and the hydro-structural stability around 25%, and in a significant increase in the bulk soil density. These changes went with a decrease of the structural pore volumes at any pore size, a disappearing of the thinnest structural pores, a decrease in plant available water, and a hardening of the plasma. On the contrary, leek roots decreased the bulk soil density up to 1.23 g cm -3 despite an initial bulk density of 1.15 g cm -3. This increase in volume was accompanied with a enhanced hydro-structural stability, a larger structural pore volume at any pore size, smaller structural pore radii and an increase in plant available water. Interestingly, a synergistic effect of leek roots and AMF in the absence of the earthworms was highlighted, and this synergistic effect was not observed in presence of earthworms. The structural pore volume generated by root and AMF growth was several orders of magnitude larger than the volume of the organisms. Root exudates as well as other AMF secretion have served as carbon source for bacteria that in turn would enhance soil aggregation and porosity, thus supporting the idea of a self-organization of the soil-plant-microbe complex previously described.

Soil Aeration deficiencies in urban sites

NASA Astrophysics Data System (ADS)

Weltecke, Katharina; Gaertig, Thorsten

2010-05-01

Soil aeration deficiencies in urban sites Katharina Weltecke and Thorsten Gaertig On urban tree sites reduction of soil aeration by compaction or sealing is an important but frequently underestimated factor for tree growth. Up to 50% of the CO2 assimilated during the vegetation period is respired in the root space (Qi et al. 1994). An adequate supply of the soil with oxygen and a proper disposal of the exhaled carbon dioxide are essential for an undisturbed root respiration. If the soil surface is smeared, compacted or sealed, soil aeration is interrupted. Several references show that root activity and fine root growth are controlled by the carbon dioxide concentration in soil air (Qi et al.1994, Burton et al. 1997). Gaertig (2001) found that decreasing topsoil gas permeability leads to reduced fine root density and hence to injury in crown structure of oaks. In forest soils a critical CO2 concentration of more than 0.6 % indicates a bad aeration status (Gaertig 2001). The majority of urban tree sites are compacted or sealed. The reduction of soil aeration may lead to dysfunctions in the root space and consequently to stress during periods of drought, which has its visible affects in crown structure. It is reasonable to assume that disturbances in soil aeration lead to reduced tree vigour and roadworthiness, resulting in high maintenance costs. The assessment of soil aeration in urban sites is difficult. In natural ecosystems the measurement of gas diffusivity and the gas-chromatical analysis of CO2 in soil air are accepted procedures in analyzing the state of aeration (Schack-Kirchner et al. 2001, Gaertig 2001). It has been found that these methods can also be applied for analyzing urban sites. In particular CO2 concentration in the soil atmosphere can be considered as a rapidly assessable, relevant and integrating indicator of the aeration situation of urban soils. This study tested the working hypothesis that soil aeration deficiencies lead to a decrease of fine root density and tree vigour on urban soils. For that purpose gas diffusivity, soil CO2 concentrations and fine root density were measured on typical urban sites in the German cities of Göttingen, Mannheim, and Kassel. The known characteristics of soil aeration on forest sites could be affirmed for urban soils. A negative correlation was found between gas diffusion coefficients and CO2 concentration as well as between fine root extension and CO2 concentration. Changes in crown structure of beech indicating a loss of vigour were found at sites with disturbed aeration. Diffusivity patterns and CO2 concentrations of different specific urban soil sealing types were found. On more natural sites (mulch, grass) increased gas diffusion and low CO2 concentration were present. In contrast, on more compacted or sealed areas (asphalt, paving stone, macadamised road surface) the exchange between soil air and atmosphere was nearly disconnected and soil CO2 concentrations partly exceeded the known critical value of 0.6 % up to tenfold. Literature Burton, A. J.; Pregitzer, K. S.; Zogg, G. P. und Zak D. R. (1997): Effect of measurement CO2 concentrations on sugar maple root respiration. In: Canadian journal of Forest Research, H. 17, S. 421-427. Gaertig, T. (2001): Bodengashaushalt, Feinwurzeln und Vitalität von Eichen. In: Freiburger Bodenkundliche Abhandlungen, H. 40, S. 157. Qi, J.; Marshall, J. D.; Mattson, K. G. (1994): High soil carbon dioxide concentrations inhibit root respiration of Douglas fir. In: New Phytol., Jg. 128, H. 3, S. 435-442. Schack-Kirchner, H.; Gaertig, T.; Wilpert, K. v.; Hildebrand, E. E. (2001): A modified McIntyre and Phillip approach to measure top-soil gas diffusivity in-situ. In: J. Plant Nutr. Soil Sci., Jg. 164, S. 253-258.

Effects of Near Soil Surface Characteristics on the Soil Detachment Process in a Chronological Series of Vegetation Restoration

NASA Astrophysics Data System (ADS)

Wang, Bing

2017-04-01

The effects of near soil surface characteristics on the soil detachment process might be different at different stages of vegetation restoration. This study was performed to investigate the effects of the near soil surface factors of plant litter, biological soil crusts (BSCs), dead roots and live roots on the soil detachment process by overland flow at different stages of restoration. Soil samples (1 m long, 0.1 m wide, and 0.05 m high) under four treatment conditions were collected from 1-yr-old and 24-yr-old natural grasslands and subjected to flow scouring under five different shear stresses ranging from 5.3 to 14.6 Pa. The results indicated that the effects of near soil surface characteristics on soil detachment were substantial during the process of vegetation restoration. The total reduction in the soil detachment capacity of the 1-yr-old grassland was 98.1%, and of this total, 7.9%, 30.0% and 60.2% was attributed to the litter, BSCs and plant roots, respectively. In the 24-yr-old grassland, the soil detachment capacity decreased by 99.0%, of which 13.2%, 23.5% and 62.3% was caused by the litter, BSCs and plant roots, respectively. Combined with the previously published data of a 7-yr-old grassland, the influence of plant litter on soil detachment was demonstrated to increase with restoration time, but soil detachment was also affected by the litter type and composition. The role of BSCs was greater than that of plant litter in reducing soil detachment during the early stages of vegetation recovery. However, its contribution weakened with time since restoration. The influence of plant roots accounted for at least half or up to two-thirds of the total near soil surface factors, of which more than 72.6% was attributed to the physical binding effects of the roots. The chemical bonding effect of the roots increased with time since restoration and was greater than the effect of the litter on soil detachment in the late stages of vegetation restoration. The correction coefficients of near soil surface characteristics for rill erodibility were provided for the Water Erosion Prediction Project (WEPP) model.

[Effects of elevated ozone concentrations on enzyme activities and organic acids content in wheat rhizospheric soil.

PubMed

Yin, Wei Qin; Jing, Hao Qi; Wang, Ya Bo; Wei, Si Yu; Sun, Yue; Wang, Sheng Sen; Wang, Xuai Zhi

2018-02-01

The elevated concentration of tropospheric ozone (O 3 ) is an important global climate change driver, with adverse impacts on soil ecological environment and crop growth. In this study, a pot experiment was carried out in an open top chamber (OTC), to investigate the effects of elevated ozone concentration on soil enzyme activities (catalase, polyphenol oxidase, dehydrogenase and invertase), organic acids contents (oxalic acid, citric acid and malic acid) at different growth stages (tillering, jointing, heading and ripening stages) of wheat, and combined with the rhizospheric soil physicochemical properties and plant root characteristics to analyze the underlying reasons. The results showed that, elevated ozone concentration increased soil catalase, polyphenol oxidase, dehydrogenase and invertase activities at wheat ripening period to different degrees, with the effects on the activities of catalase and polyphenol oxidase being statistically significant. At the heading stage, activities of dehydrogenase and invertase were significantly increased by up to 76.7%. At the ripening stage, elevated ozone concentration significantly increased the content of citric acid and malic acid and redox potential (Eh) in rhizospheric soil, but reduced soil pH, electrical conductivity, total carbon and nitrogen. For root characteristics, elevated ozone concentrations significantly reduced the wheat root biomass, total root length and root surface area but increased the average root diameter.

A simple and cost-effective method for cable root detection and extension measurement in estuary wetland forests

NASA Astrophysics Data System (ADS)

Vovides, Alejandra G.; Marín-Castro, Beatriz; Barradas, Guadalupe; Berger, Uta; López-Portillo, Jorge

2016-12-01

This work presents the development of a low-cost method to measure the length cable roots of black mangrove (Avicennia germinans) trees to define the boundaries of central part of the anchoring root system (CPRS) without the need to fully expose root systems. The method was tested to locate and measure the length shallow woody root systems. An ultrasonic Doppler fetal monitor (UD) and a stock of steel rods (SR) were used to probe root locations without removing sediments from the surface, measure their length and estimate root-soil plate dimensions. The method was validated by comparing measurements with root lengths taken through direct measurement of excavated cable roots and from root-soil plate radii (exposed root-soil material when a tree tips over) of five up-rooted trees with stem diameters (D130) ranging between 10 and 50 cm. The mean CPRS radius estimated with the use of the Doppler was directly correlated with tree stem diameter and was not significantly different from the root-soil plate mean radius measured from up-rooted trees or from CPRS approximated by digging trenches. Our method proved to be effective and reliable in following cable roots for large amounts of trees of both black and white mangrove trees. In a period of 40 days of work, three people were capable of measuring 648 roots belonging to 81 trees, out of which 37% were found grafted to other tree roots. This simple method can be helpful in following shallow root systems with minimal impact and help map root connection networks of grafted trees.

[Adaptive adjustment of rhizome and root system on morphology, biomass and nutrient in Phyllostachys rivalis under long-term waterlogged condition].

PubMed

Liu, Yu-fang; Chen, Shuang-lin; Li Ying-chun; Guo, Zi-wu; Li, Ying-chun; Yang, Qing-ping

2015-12-01

The research was to approach the growth strategy of rhizome and roots based on the morphology, biomass and nutrient in Phyllostachys rivalis under long-term waterlogged conditions, and provided a theoretical basis for its application for vegetation restoration in wetland and water-level fluctuation belts. The morphological characteristics, physiological and biochemical indexes of annual bamboo rhizome and roots were investigated with an experiment using individually potted P. rivalis which was treated by artificial water-logging for 3, 6, and 12 months. Accordingly the morphological characteristics, biomass allocation, nutrient absorption and balance in rhizome and roots of P. rivalis were analyzed. The results showed that there was no obvious impact of long-term water-logging on the length and diameter of rhizomes, diameter of roots in P. rivalis. The morphological characteristics of rhizome had been less affected generally under water-logging for 3 months. And less rhizomes were submerged, while the growth of roots was inhibited to some extent. Furthermore, with waterlogging time extended, submerged roots and rhizomes grew abundantly, and the roots and rhizomes in soil were promoted. Moreover for ratios of rhizome biomass in soil and water, there were no obvious variations, the same for the root biomass in soil to total biomass. The ratio of root biomass in water to total biomass and the ratio of root biomass in water to root biomass in soil both increased significantly. The results indicated that P. rivalis could adapt to waterlogged conditions gradually through growth regulation and reasonable biomass distribution. However, the activity of rhizome roots in soil decreased and the nutrient absorption was inhibited by long-term water-logging, although it had no effect on stoichiometric ratios of root nutrient in soil. The activity of rhizome root in water increased and the stoichiometric ratios adjusted adaptively to waterlogged conditions, the ratio of N/P increased, while N/K and P/K decreased, which implied that roots in water absorbed oxygen and nutrients could help P. rivalis adapt to long-term waterlogged environment effectively.

Investigation of Soil and Vegetation Characteristics in Discontinuous Permafrost Landscapes Near Fairbanks, Alaska

DTIC Science & Technology

2015-08-01

watermelon berry, wild strawberry , blueberry (Vaccinium alaskaense), sedge (Carex spp.), salmonberry (Rubus spp.), prickly rose (Rosa acicularis... Strawberry Fragaria canadensis UPL X USDA, NRCS (2014) Labrador tea Rhododendron groenlandicum FAC X USDA, NRCS (2014) Twinflower Linnaea

Distributions of imidacloprid, imidacloprid-olefin and imidacloprid-urea in green plant tissues and roots of rapeseed (Brassica napus) from artificially contaminated potting soil.

PubMed

Seifrtova, Marcela; Halesova, Tatana; Sulcova, Klara; Riddellova, Katerina; Erban, Tomas

2017-05-01

Imidacloprid-urea is the primary imidacloprid soil metabolite, whereas imidacloprid-olefin is the main plant-relevant metabolite and is more toxic to insects than imidacloprid. We artificially contaminated potting soil and used quantitative UHPLC-QqQ-MS/MS to determine the imidacloprid, imidacloprid-olefin and imidacloprid-urea distributions in rapeseed green plant tissues and roots after 4 weeks of exposure. In soil, the imidacloprid/imidacloprid-urea molar ratios decreased similarly after the 250 and 2500 µg kg -1 imidacloprid treatments. The imidacloprid/imidacloprid-urea molar ratios in the root and soil were similar, whereas in the green plant tissue, imidacloprid-urea increased more than twofold compared with the root. Although imidacloprid-olefin was prevalent in the green plant tissues, with imidacloprid/imidacloprid-olefin molar ratios of 2.24 and 1.47 for the 250 and 2500 µg kg -1 treatments respectively, it was not detected in the root. However, imidacloprid-olefin was detected in the soil after the 2500 µg kg -1 imidacloprid treatment. Significant proportions of imidacloprid-olefin and imidacloprid-urea in green plant tissues were demonstrated. The greater imidacloprid supply increased the imidacloprid-olefin/imidacloprid molar ratio in the green plant tissues. The absence of imidacloprid-olefin in the root excluded its retransport from leaves. The similar imidacloprid/imidacloprid-urea ratios in the soil and root indicated that the root serves primarily for transporting these substances. © 2016 Society of Chemical Industry. © 2016 Society of Chemical Industry.

Fine root dynamics and forest production across a calcium gradient in northern hardwood and conifer ecosystems

USGS Publications Warehouse

Park, B.B.; Yanai, R.D.; Fahey, T.J.; Bailey, S.W.; Siccama, T.G.; Shanley, J.B.; Cleavitt, N.L.

2008-01-01

Losses of soil base cations due to acid rain have been implicated in declines of red spruce and sugar maple in the northeastern USA. We studied fine root and aboveground biomass and production in five northern hardwood and three conifer stands differing in soil Ca status at Sleepers River, VT; Hubbard Brook, NH; and Cone Pond, NH. Neither aboveground biomass and production nor belowground biomass were related to soil Ca or Ca:Al ratios across this gradient. Hardwood stands had 37% higher aboveground biomass (P = 0.03) and 44% higher leaf litter production (P < 0.01) than the conifer stands, on average. Fine root biomass (<2 mm in diameter) in the upper 35 cm of the soil, including the forest floor, was very similar in hardwoods and conifers (5.92 and 5.93 Mg ha-1). The turnover coefficient (TC) of fine roots smaller than 1 mm ranged from 0.62 to 1.86 y-1 and increased significantly with soil exchangeable Ca (P = 0.03). As a result, calculated fine root production was clearly higher in sites with higher soil Ca (P = 0.02). Fine root production (biomass times turnover) ranged from 1.2 to 3.7 Mg ha-1 y-1 for hardwood stands and from 0.9 to 2.3 Mg ha-1 y -1 for conifer stands. The relationship we observed between soil Ca availability and root production suggests that cation depletion might lead to reduced carbon allocation to roots in these ecosystems. ?? 2008 Springer Science+Business Media, LLC.

Rapid detection of talcum powder in tea using FT-IR spectroscopy coupled with chemometrics

PubMed Central

Li, Xiaoli; Zhang, Yuying; He, Yong

2016-01-01

This paper investigated the feasibility of Fourier transform infrared transmission (FT-IR) spectroscopy to detect talcum powder illegally added in tea based on chemometric methods. Firstly, 210 samples of tea powder with 13 dose levels of talcum powder were prepared for FT-IR spectra acquirement. In order to highlight the slight variations in FT-IR spectra, smoothing, normalize and standard normal variate (SNV) were employed to preprocess the raw spectra. Among them, SNV preprocessing had the best performance with high correlation of prediction (RP = 0.948) and low root mean square error of prediction (RMSEP = 0.108) of partial least squares (PLS) model. Then 18 characteristic wavenumbers were selected based on a hybrid of backward interval partial least squares (biPLS) regression, competitive adaptive reweighted sampling (CARS) algorithm and successive projections algorithm (SPA). These characteristic wavenumbers only accounted for 0.64% of the full wavenumbers. Following that, 18 characteristic wavenumbers were used to build linear and nonlinear determination models by PLS regression and extreme learning machine (ELM), respectively. The optimal model with RP = 0.963 and RMSEP = 0.137 was achieved by ELM algorithm. These results demonstrated that FT-IR spectroscopy with chemometrics could be used successfully to detect talcum powder in tea. PMID:27468701

The Impact of Rhizosphere Processes on Water Flow and Root Water Uptake

NASA Astrophysics Data System (ADS)

Schwartz, Nimrod; Kroener, Eva; Carminati, Andrea; Javaux, Mathieu

2015-04-01

For many years, the rhizosphere, which is the zone of soil in the vicinity of the roots and which is influenced by the roots, is known as a unique soil environment with different physical, biological and chemical properties than those of the bulk soil. Indeed, in recent studies it has been shown that root exudate and especially mucilage alter the hydraulic properties of the soil, and that drying and wetting cycles of mucilage result in non-equilibrium water dynamics in the rhizosphere. While there are experimental evidences and simplified 1D model for those concepts, an integrated model that considers rhizosphere processes with a detailed model for water and roots flow is absent. Therefore, the objective of this work is to develop a 3D physical model of water flow in the soil-plant continuum that take in consideration root architecture and rhizosphere specific properties. Ultimately, this model will enhance our understanding on the impact of processes occurring in the rhizosphere on water flow and root water uptake. To achieve this objective, we coupled R-SWMS, a detailed 3D model for water flow in soil and root system (Javaux et al 2008), with the rhizosphere model developed by Kroener et al (2014). In the new Rhizo-RSWMS model the rhizosphere hydraulic properties differ from those of the bulk soil, and non-equilibrium dynamics between the rhizosphere water content and pressure head is also considered. We simulated a wetting scenario. The soil was initially dry and it was wetted from the top at a constant flow rate. The model predicts that, after infiltration the water content in the rhizosphere remained lower than in the bulk soil (non-equilibrium), but over time water infiltrated into the rhizosphere and eventually the water content in the rhizosphere became higher than in the bulk soil. These results are in qualitative agreement with the available experimental data on water dynamics in the rhizosphere. Additionally, the results show that rhizosphere processes affect the spatial distribution of root water uptake. This suggests that rhizosphere processes effect root water uptake at the plant scale. Overall, these preliminary results demonstrate the impact of rhizosphere on water flow and root water uptake, and the ability of the Rhizo-RSWMS to simulate these processes. References Javaux, M., Schröder, T., Vanderborght, J., & Vereecken, H. (2008). Use of a three-dimensional detailed modeling approach for predicting root water uptake. Vadose Zone Journal, 7(3), 1079-1088.‏ Kroener, E., Zarebanadkouki, M., Kaestner, A., & Carminati, A. (2014). Nonequilibrium water dynamics in the rhizosphere: How mucilage affects water flow in soils. Water Resources Research, 50(8), 6479-6495.‏

Influences of canopy photosynthesis and summer rain pulses on root dynamics and soil respiration in a young ponderosa pine forest.

PubMed

Misson, Laurent; Gershenson, Alexander; Tang, Jianwu; McKay, Megan; Cheng, Weixin; Goldstein, Allen

2006-07-01

Our first objective was to link the seasonality of fine root dynamics with soil respiration in a ponderosa pine (Pinus ponderosa P. & C. Lawson) plantation located in the Sierra Nevada of California. The second objective was to examine how canopy photosynthesis influences fine root initiation, growth and mortality in this ecosystem. We compared CO2 flux measurements with aboveground and belowground root dynamics. Initiation of fine root growth coincided with tree stem thickening and shoot elongation, preceding new needle growth. In the spring, root, shoot and stem growth occurred simultaneously with the increase in canopy photosynthesis. Compared with the other tree components, initial growth rate of fine roots was the highest and their growing period was the shortest. Both above and belowground components completed 90% of their growth by the end of July and the growing season lasted approximately 80 days. The period for optimal growth is short at the study site because of low soil temperatures during winter and low soil water content during summer. High photosynthetic rates were observed following unusual late-summer rains, but tree growth did not resume. The autotrophic contribution to soil respiration was 49% over the whole season, with daily contributions ranging between 18 and 87%. Increases in soil and ecosystem respiration were observed during spring growth; however, the largest variation in soil respiration occurred during summer rain events when no growth was observed. Both the magnitude and persistence of the soil respiration pulses were positively correlated with the amount of rain. These pulses accounted for 16.5% of soil respiration between Days 130 and 329.

Root strength changes after logging in southeast Alaska

Treesearch

R. R. Ziemer; D. N. Swanston

1977-01-01

Abstract - A crucial factor in the stability of steep forested slopes is the role of plant roots in maintaining the shear strength of soil mantles. Roots add strength to the soil by vertically anchoring through the soil mass into failures in the bedrock and by laterally tying the slope together across zones of weakness or instability. Once the covering vegetation is...

Fine and coarse root parameters from mature black spruce displaying genetic x soil moisture interaction in growth

Treesearch

John E. Major; Kurt H. Johnsen; Debby C. Barsi; Moira Campbell

2012-01-01

Fine and coarse root biomass, C, and N mass parameters were assessed by root size and soil depths from soil cores in plots of 32-year-old black spruce (Picea mariana (Mill.) Britton, Sterns & Poggenb.) from four full-sib families studied previously for drought tolerance and differential productivity on a dry and wet...

Root and soil total carbon and nitrogen under bioenergy perennial grasses with various nitrogen rates

USDA-ARS?s Scientific Manuscript database

Information is scanty about root and soil C and N under bioenergy perennial grasses with various N fertilization rates in semiarid regions. We evaluated the effect of perennial grasses and N rates on root biomass C and N and soil total C (STC) and total N (STN) stocks at the 0-120 cm depth from 2011...

In situ separation of root hydraulic redistribution of soil water from liquid and vapor transport

Treesearch

Jeffrey M. Warren; J. Renée Brooks; Maria I. Dragila; Frederick C. Meinzer

2011-01-01

Nocturnal increases in water potential and water content in the upper soil profile are often attributed to root water efflux, a process termed hydraulic redistribution (HR). However, unsaturated liquid or vapor flux of water between soil layers independent of roots also contributes to the daily recovery in water content, confounding efforts to determine the actual...