Human exposure to soil contaminants in subarctic Ontario, Canada.

PubMed

Reyes, Ellen Stephanie; Liberda, Eric Nicholas; Tsuji, Leonard James S

2015-01-01

Chemical contaminants in the Canadian subarctic present a health risk with exposures primarily occurring via the food consumption. Characterization of soil contaminants is needed in northern Canada due to increased gardening and agricultural food security initiatives and the presence of known point sources of pollution. A field study was conducted in the western James Bay Region of Ontario, Canada, to examine the concentrations of polychlorinated biphenyls, dichlorodiphenyltrichloroethane and its metabolites (ΣDDT), other organochlorines, and metals/metalloids in potentially contaminated agriculture sites. Exposure pathways were assessed by comparing the estimated daily intake to acceptable daily intake values. Ninety soil samples were collected at random (grid sampling) from 3 plots (A, B, and C) in Fort Albany (on the mainland), subarctic Ontario, Canada. The contaminated-soil samples were analysed by gas chromatography with an electron capture detector or inductively coupled plasma mass spectrometer. The range of ΣDDT in 90 soil samples was below the limit of detection to 4.19 mg/kg. From the 3 soil plots analysed, Plot A had the highest ΣDDT mean concentration of 1.12 mg/kg, followed by Plot B and Plot C which had 0.09 and 0.01 mg/kg, respectively. Concentrations of other organic contaminants and metals in the soil samples were below the limit of detection or found in low concentrations in all plots and did not present a human health risk. Exposure analyses showed that the human risk was below regulatory thresholds. However, the ΣDDT concentration in Plot A exceeded soil guidelines set out by the Canadian Council of Ministers of the Environment of 0.7 mg/kg, and thus the land should not be used for agricultural or recreational purposes. Both Plots B and C were below threshold limits, and this land can be used for agricultural purposes.

In situ semi-quantitative analysis of polluted soils by laser-induced breakdown spectroscopy (LIBS).

PubMed

Ismaël, Amina; Bousquet, Bruno; Michel-Le Pierrès, Karine; Travaillé, Grégoire; Canioni, Lionel; Roy, Stéphane

2011-05-01

Time-saving, low-cost analyses of soil contamination are required to ensure fast and efficient pollution removal and remedial operations. In this work, laser-induced breakdown spectroscopy (LIBS) has been successfully applied to in situ analyses of polluted soils, providing direct semi-quantitative information about the extent of pollution. A field campaign has been carried out in Brittany (France) on a site presenting high levels of heavy metal concentrations. Results on iron as a major component as well as on lead and copper as minor components are reported. Soil samples were dried and prepared as pressed pellets to minimize the effects of moisture and density on the results. LIBS analyses were performed with a Nd:YAG laser operating at 1064 nm, 60 mJ per 10 ns pulse, at a repetition rate of 10 Hz with a diameter of 500 μm on the sample surface. Good correlations were obtained between the LIBS signals and the values of concentrations deduced from inductively coupled plasma atomic emission spectroscopy (ICP-AES). This result proves that LIBS is an efficient method for optimizing sampling operations. Indeed, "LIBS maps" were established directly on-site, providing valuable assistance in optimizing the selection of the most relevant samples for future expensive and time-consuming laboratory analysis and avoiding useless analyses of very similar samples. Finally, it is emphasized that in situ LIBS is not described here as an alternative quantitative analytical method to the usual laboratory measurements but simply as an efficient time-saving tool to optimize sampling operations and to drastically reduce the number of soil samples to be analyzed, thus reducing costs. The detection limits of 200 ppm for lead and 80 ppm for copper reported here are compatible with the thresholds of toxicity; thus, this in situ LIBS campaign was fully validated for these two elements. Consequently, further experiments are planned to extend this study to other chemical elements and other matrices of soils.

Exposure of school children to polycyclic aromatic hydrocarbons, heavy metals and radionuclides in the urban soil of Kragujevac city, Central Serbia.

PubMed

Stajic, J M; Milenkovic, B; Pucarevic, M; Stojic, N; Vasiljevic, I; Nikezic, D

2016-03-01

The concentrations of radionuclides, polycyclic aromatic hydrocarbons (PAHs) and heavy metals were measured in soil samples collected from school backyards and playgrounds in Kragujevac, one of the largest cities of Central Serbia. The activity concentrations of (226)Ra, (232)Th, (40)K and (137)Cs were determined using the HPGe semiconductor detector. The average values were 34.6, 44.7, 428.9 and 45.1 Bq kg(-1), respectively. The correlation between the activity concentrations of (226)Ra in the soil samples and the results of the previous measurement of (222)Rn concentrations in the indoor air was examined. The absorbed dose rates, the annual effective doses and excess lifetime cancer risk were also estimated. The activity concentrations of (226)Ra and (232)Th have shown normal distribution. The collected soil samples were analysed for PAHs by HPLC. All analysed soil samples contained PAHs, and their total amounts (for 15 measured compounds) were found to be between 0.038 and 3.136 mg kg(-1) of absolutely dry soil (a.d.s). In addition the concentrations of As, Cd, Co, Cr, Cu, Fe, Mn, Ni, Pb and Zn were measured in the fourteen soil samples collected from the playgrounds of kindergartens. Copyright © 2015 Elsevier Ltd. All rights reserved.

Soil physical property estimation from soil strength and apparent electrical conductivity sensor data

USDA-ARS?s Scientific Manuscript database

Quantification of soil physical properties through soil sampling and laboratory analyses is time-, cost-, and labor-consuming, making it difficult to obtain the spatially-dense data required for precision agriculture. Proximal soil sensing is an attractive alternative, but many currently available s...

Visible and infrared spectroscopy to evaluate soil quality in degraded sites: an applicative study in southern Italy

NASA Astrophysics Data System (ADS)

Ancona, Valeria; Matarrese, Raffaella; Salvatori, Rosamaria; Salzano, Roberto; Regano, Simona; Calabrese, Angelantonio; Campanale, Claudia; Felice Uricchio, Vito

2014-05-01

Land degradation processes like organic matter impoverishment and contamination are growing increasingly all over the world due to a non-rational and often sustainable spread of human activities on the territory. Consequently the need to characterize and monitor degraded sites is becoming very important, with the aim to hinder such main threats, which could compromise drastically, soil quality. Visible and infrared spectroscopy is a well-known technique/tool to study soil properties. Vis-NIR spectral reflectance, in fact, can be used to characterize spatial and temporal variation in soil constituents (Brown et al., 2006; Viscarra Rossel et al., 2006), and potentially its surface structure (Chappell et al., 2006, 2007). It is a rapid, non-destructive, reproducible and cost-effective analytical method to analyse soil properties and therefore, it can be a useful method to study land degradation phenomena. In this work, we present the results of proximal sensing investigations of three degraded sites (one affected by organic and inorganic contamination and two affected by soil organic matter decline) situated southern Italy close to Taranto city (in Apulia Region). A portable spectroradiometer (ASD-FieldSpec) was used to measure the reflectance properties in the spectral range between 350-2500 nm of the soil, in the selected sites, before and after a recovery treatment by using compost (organic fertilizer). For each measurement point the soil was sampled in order to perform chemical analyses to evaluate soil quality status. Three in-situ campaigns have been carried out (September 2012, June 2013, and September 2013), collecting about 20 soil samples for each site and for each campaign. Chemical and spectral analyses have been focused on investigating soil organic carbon, carbonate content, texture and, in the case of polluted site, heavy metals and organic toxic compounds. Statistical analyses have been carried out to test a prediction model of different soil quality indicators based on the spectral signatures behaviour of each sample ranging.

Rapid Radiochemical Analyses in Support of Fukushima Nuclear Accident - 13196

DOE Office of Scientific and Technical Information (OSTI.GOV)

Maxwell, Sherrod L.; Culligan, Brian K.; Hutchison, Jay B.

There is an increasing need to develop faster analytical methods for emergency response, including emergency soil and air filter samples [1, 2]. The Savannah River National Laboratory (SRNL) performed analyses on samples received from Japan in April, 2011 as part of a U.S. Department of Energy effort to provide assistance to the government of Japan, following the nuclear event at Fukushima Daiichi, resulting from the earthquake and tsunami on March 11, 2011. Of particular concern was whether it was safe to plant rice in certain areas (prefectures) near Fukushima. The primary objectives of the sample collection, sample analysis, and datamore » assessment teams were to evaluate personnel exposure hazards, identify the nuclear power plant radiological source term and plume deposition, and assist the government of Japan in assessing any environmental and agricultural impacts associated with the nuclear event. SRNL analyzed approximately 250 samples and reported approximately 500 analytical method determinations. Samples included soil from farmland surrounding the Fukushima reactors and air monitoring samples of national interest, including those collected at the U.S. Embassy and American military bases. Samples were analyzed for a wide range of radionuclides, including strontium-89, strontium-90, gamma-emitting radionuclides, and plutonium, uranium, americium and curium isotopes. Technical aspects of the rapid soil and air filter analyses will be described. The extent of radiostrontium contamination was a significant concern. For {sup 89,90}Sr analyses on soil samples, a rapid fusion technique using 1.5 gram soil aliquots to enable a Minimum Detectable Activity (MDA) of <1 pCi {sup 89,90}Sr /g of soil was employed. This sequential technique has been published recently by this laboratory for actinides and radiostrontium in soil and vegetation [3, 4]. It consists of a rapid sodium hydroxide fusion, pre-concentration steps using iron hydroxide and calcium fluoride precipitations, followed by Sr-Resin separation and gas flow proportional counting. To achieve a lower detection limit for analysis of some of the Japanese soil samples, a 10 gram aliquot of soil was taken, acid-leached and processed with similar preconcentration chemistry. The MDA using this approach was ∼0.03 pCi/g (1.1 mBq/g)/, which is less than the 0.05-0.10 pCi/g {sup 90}Sr levels found in soil as a result of global fallout. The chemical yields observed for the Japanese soil samples was typically 75-80% and the laboratory control sample (LCS) and matrix spike (MS) results looked very good for this work Individual QC results were well within the ± 25% acceptable range and the average of these results does not show significant bias. Additional data for a radiostrontium in soil method for 50 gram samples will also be presented, which appears to be a significant step forward based on looking at the current literature, with higher chemical yields for even larger sample aliquots and lower MDA [5, 6, 7] Hou et al surveyed a wide range of separation methods for Pu in waters and environmental solid samples [8]. While there are many actinide methods in the scientific literature, few would be considered rapid due to the tedious and time-consuming steps involved. For actinide analyses in soil, a new rapid method for the determination of actinide isotopes in soil samples using both alpha spectrometry and inductively-coupled plasma mass spectrometry was employed. The new rapid soil method utilizes an acid leaching method, iron/titanium hydroxide precipitation, a lanthanum fluoride soil matrix removal step, and a rapid column separation process with TEVA Resin. The large soil matrix is removed easily and rapidly using these two simple precipitations with high chemical recoveries and effective removal of interferences. [9, 10] Vacuum box technology and rapid flow rates were used to reduce analytical time. Challenges associated with the mineral content in the volcanic soil will be discussed. Air filter samples were reported within twenty-four (24) hours of receipt using rapid techniques published previously. [11] The rapid reporting of high quality analytical data arranged through the U.S. Department of Energy Consequence Management Home Team was critical to allow the government of Japan to readily evaluate radiological impacts from the nuclear reactor incident to both personnel and the environment. SRNL employed unique rapid methods capability for radionuclides to support Japan that can also be applied to environmental, bioassay and waste management samples. New rapid radiochemical techniques for radionuclides in soil and other environmental matrices as well as some of the unique challenges associated with this work will be presented that can be used for application to environmental monitoring, environmental remediation, decommissioning and decontamination activities. (authors)« less

RAPID RADIOCHEMICAL ANALYSES IN SUPPORT OF FUKUSHIMA NUCLEAR ACCIDENT

DOE Office of Scientific and Technical Information (OSTI.GOV)

Maxwell, S.

2012-11-07

There is an increasing need to develop faster analytical methods for emergency response, including emergency soil and air filter samples. The Savannah River National Laboratory (SRNL) performed analyses on samples received from Japan in April, 2011 as part of a U.S. Department of Energy effort to provide assistance to the government of Japan, following the nuclear event at Fukushima Daiichi, resulting from the earthquake and tsunami on March 11, 2011. Of particular concern was whether it was safe to plant rice in certain areas (prefectures) near Fukushima. The primary objectives of the sample collection, sample analysis, and data assessment teamsmore » were to evaluate personnel exposure hazards, identify the nuclear power plant radiological source term and plume deposition, and assist the government of Japan in assessing any environmental and agricultural impacts associated with the nuclear event. SRNL analyzed approximately 250 samples and reported approximately 500 analytical method determinations. Samples included soil from farmland surrounding the Fukushima reactors and air monitoring samples of national interest, including those collected at the U.S. Embassy and American military bases. Samples were analyzed for a wide range of radionuclides, including strontium-89, strontium-90, gamma-emitting radionuclides, and plutonium, uranium, americium and curium isotopes. Technical aspects of the rapid soil and air filter analyses will be described. The extent of radiostrontium contamination was a significant concern. For {sup 89,90}Sr analyses on soil samples, a rapid fusion technique using 1.5 gram soil aliquots to enable a Minimum Detectable Activity (MDA) of <1 pCi {sup 89,90} Sr /g of soil was employed. This sequential technique has been published recently by this laboratory for actinides and radiostrontium in soil and vegetation. It consists of a rapid sodium hydroxide fusion, pre-concentration steps using iron hydroxide and calcium fluoride precipitations, followed by Sr-Resin separation and gas flow proportional counting. To achieve a lower detection limit for analysis of some of the Japanese soil samples, a 10 gram aliquot of soil was taken, acid-leached and processed with similar preconcentration chemistry. The MDA using this approach was ~0.03 pCi/g (1.1 mBq/g)/, which is less than the 0.05-0.10 pCi/g {sup 90}Sr levels found in soil as a result of global fallout. The chemical yields observed for the Japanese soil samples was typically 75-80% and the laboratory control sample (LCS) and matrix spike (MS) results looked very good for this work Individual QC results were well within the ± 25% acceptable range and the average of these results does not show significant bias. Additional data for a radiostrontium in soil method for 50 gram samples will also be presented, which appears to be a significant step forward based on looking at the current literature, with higher chemical yields for even larger sample aliquots and lower MDA. Hou et al surveyed a wide range of separation methods for Pu in waters and environmental solid samples. While there are many actinide methods in the scientific literature, few would be considered rapid due to the tedious and time-consuming steps involved. For actinide analyses in soil, a new rapid method for the determination of actinide isotopes in soil samples using both alpha spectrometry and inductively-coupled plasma mass spectrometry was employed. The new rapid soil method utilizes an acid leaching method, iron/titanium hydroxide precipitation, a lanthanum fluoride soil matrix removal step, and a rapid column separation process with TEVA Resin. The large soil matrix is removed easily and rapidly using these two simple precipitations with high chemical recoveries and effective removal of interferences. Vacuum box technology and rapid flow rates were used to reduce analytical time. Challenges associated with the mineral content in the volcanic soil will be discussed. Air filter samples were reported within twenty-four (24) hours of receipt using rapid techniques published previously. The rapid reporting of high quality analytical data arranged through the U.S. Department of Energy Consequence Management Home Team was critical to allow the government of Japan to readily evaluate radiological impacts from the nuclear reactor incident to both personnel and the environment. SRNL employed unique rapid methods capability for radionuclides to support Japan that can also be applied to environmental, bioassay and waste management samples. New rapid radiochemical techniques for radionuclides in soil and other environmental matrices as well as some of the unique challenges associated with this work will be presented that can be used for application to environmental monitoring, environmental remediation, decommissioning and decontamination activities.« less

The influences of selected soil properties on Pb availability and its transfer to wheat (Triticum aestivum L.) in a polluted calcareous soil.

PubMed

Safari, Yaser; Delavar, Mohammad-Amir; Zhang, Chaosheng; Esfandiarpour-Boroujeni, Isa; Owliaie, Hamid-Reza

2015-12-01

Accumulated anthropogenic heavy metals in the surface layer of agricultural soils may be transferred through the food chain via plant uptake processes. The objectives of this study were to assess the spatial distribution of lead (Pb) in the soils and wheat plants and to determine the soil properties which may affect the Pb transferring from soil to wheat plants in Zanjan Zinc Town area, northwestern Iran. A total of 110 topsoil samples (0-20 cm) were systematically collected from an agricultural area near a large metallurgical factory for the analyses of physico-chemical properties and total and bioavailable Pb concentrations. Furthermore, a total of 65 wheat samples collected at the same soil sampling locations were analyzed for Pb concentration in different plant parts. The results showed that elevated Pb concentrations were mostly found in soils located surrounding the industrial source of pollution. The bioavailable Pb concentration in the studied soils was up to 128.4 mg kg(-1), which was relatively high considering the observed soil alkalinity. 24.6% of the wheat grain samples exceeded the FAO/WHO maximum permitted concentration of Pb in wheat grain (0.2 mg kg(-1)). Correlation analyses revealed that soil organic matter, soil pH, and clay content showed insignificant correlation with Pb concentration in the soil and wheat grains, whereas calcium carbonate content showed significantly negative correlations with both total and bioavailable Pb in the soil, and Pb content in wheat grains, demonstrating the strong influences of calcium carbonate on Pb bioavailability in the polluted calcareous soils.

History and evaluation of national-scale geochemical data sets for the United States

USGS Publications Warehouse

Smith, David B.; Smith, Steven M.; Horton, John D.

2013-01-01

Six national-scale, or near national-scale, geochemical data sets for soils or stream sediments exist for the United States. The earliest of these, here termed the ‘Shacklette’ data set, was generated by a U.S. Geological Survey (USGS) project conducted from 1961 to 1975. This project used soil collected from a depth of about 20 cm as the sampling medium at 1323 sites throughout the conterminous U.S. The National Uranium Resource Evaluation Hydrogeochemical and Stream Sediment Reconnaissance (NURE-HSSR) Program of the U.S. Department of Energy was conducted from 1975 to 1984 and collected either stream sediments, lake sediments, or soils at more than 378,000 sites in both the conterminous U.S. and Alaska. The sampled area represented about 65% of the nation. The Natural Resources Conservation Service (NRCS), from 1978 to 1982, collected samples from multiple soil horizons at sites within the major crop-growing regions of the conterminous U.S. This data set contains analyses of more than 3000 samples. The National Geochemical Survey, a USGS project conducted from 1997 to 2009, used a subset of the NURE-HSSR archival samples as its starting point and then collected primarily stream sediments, with occasional soils, in the parts of the U.S. not covered by the NURE-HSSR Program. This data set contains chemical analyses for more than 70,000 samples. The USGS, in collaboration with the Mexican Geological Survey and the Geological Survey of Canada, initiated soil sampling for the North American Soil Geochemical Landscapes Project in 2007. Sampling of three horizons or depths at more than 4800 sites in the U.S. was completed in 2010, and chemical analyses are currently ongoing. The NRCS initiated a project in the 1990s to analyze the various soil horizons from selected pedons throughout the U.S. This data set currently contains data from more than 1400 sites. This paper (1) discusses each data set in terms of its purpose, sample collection protocols, and analytical methods; and (2) evaluates each data set in terms of its appropriateness as a national-scale geochemical database and its usefulness for national-scale geochemical mapping.

Impacts of land use changes on physical and chemical soil properties in the Central Pyrenees

NASA Astrophysics Data System (ADS)

Nadal Romero, Estela; Hoitinga, Leo; Valdivielso, Sergio; Pérez Cardiel, Estela; Serrano Muela, Pili; Lasanta, Teodoro; Cammeraat, Erik

2015-04-01

Soils and vegetation tend to evolve jointly in relation to climate evolution and the impacts of human activity. Afforestation has been one of the main policies for environmental management of forest landscapes in Mediterranean areas. Afforestation has been based mainly on conifers because they are fast-growing species, and also because it was believed that this would lead to rapid restoration of soil properties and hydrological processes, and the formation of protective vegetation cover. This study analyses the effects of afforestation on physical and chemical soil properties. Specifically, we addressed this research question: (i) How do soil properties change after land abandonment? The 11 microsites considered were: Afforestation Pinus sylvestris (escarpment, terrace and close to the stem), Afforestation Pinus nigra (escarpment, terrace and close to the stem), natural shrubland, grasslands, bare lands, and undisturbed forest site (pine cover and close to the stem). An extensive single sampling was carried out in September 2014. We systematically collected 5 top soil samples (0-10 cm) and 3 deep soil samples (10-20 cm) per microsite (88 composite samples in total). These properties were analysed: (i) soil texture, (ii) bulk density, (iii) pH and electrical conductivity, (iv) total SOC, (v) Total Nitrogen, (vi) organic matter, (vii) CaCO3 and (viii) aggregate stability. Statistical tests have been applied to determine relationships between the different soil properties and are used to assess differences between different soil samples, land use areas and soil depths. Implications of reafforestation for soil development and environmental response are discussed. Acknowledgments This research was supported by a Marie Curie Intra-European Fellowship in the project "MED-AFFOREST" (PIEF-GA-2013-624974).

Methodological Approaches toward Chemico-Biological Diagnostics of the State of Soils in Technogenically Transformed Territories

NASA Astrophysics Data System (ADS)

Fokina, A. I.; Dabakh, E. V.; Domracheva, L. I.; Skugoreva, S. G.; Lyalina, E. I.; Ashikhmina, T. Ya.; Zykova, Yu. N.; Leonova, K. A.

2018-05-01

The comprehensive diagnostics of the state of soils in the impact zone of thermal power station (TPS-5) in the city of Kirov was performed on the basis of the soil chemical analyses and the study of biota response to the loads at different organization levels. The chemical analyses attested to a satisfactory state of the soils. However, the use of soil cyanobacteria and bird's-foot trefoil ( Lótus corniculátus) as test objects showed the toxicity of studied soil samples. The toxicity of the samples was judged from the bioindication effects of cyanophytization and melanization of soil microbial complexes. The obtained results demonstrated that at relatively low concentrations of total and mobile heavy metal compounds in the soil samples, their amount released into the tested soil water (1: 4) extract exceeded the limit allowable for normal functioning of living organisms. For the first time, the express cyanobacterial tetrazole-topographic method of biotesting was applied in the geoecological study to estimate the toxicity of the soil samples. The results obtained with the help of traditional and express methods proved to be comparable. The express-method was sufficiently sensitive and efficient. It allowed the determination of the samples' toxicity in five hours, i.e., four to five times faster than the traditional technique. An inverse relationship between the number of viable cells of cyanobacteria (as judged from the inclusion of formazan crystals) and the concentration of lead ions in the tested soil extracts was found. This finding can be considered a prerequisite for further study and application of the express method in the practice of geoecological monitoring. Our study demonstrated the necessity of a comprehensive approach for the assessment of the real ecological state of soils in the investigated impact zone of the thermal power station.

Biological Communities in Desert Varnish and Potential Implications for Varnish Formation Mechanisms

NASA Astrophysics Data System (ADS)

Lang-Yona, Naama; Maier, Stefanie; Macholdt, Dorothea; Rodriguez-Caballero, Emilio; Müller-Germann, Isabell; Yordanova, Petya; Jochum, Klaus-Peter; Andreae, Meinrat O.; Pöschl, Ulrich; Weber, Bettina; Fröhlich-Nowoisky, Janine

2017-04-01

Desert varnishes are thin, orange to black coatings found on rocks in arid and semi-arid environments on Earth. The formation mechanisms of rock varnish are still under debate and the involvement of microorganisms in this process remains unclear. In this work we aimed to identify the microbial community occurring in rock varnish to potentially gain insights into the varnish formation mechanism. For this purpose, rocks coated with desert varnish were collected from the Anza-Borrego Desert, California, USA, as well as soils from underneath the rocks. DNA from both varnish coatings and soil samples was extracted and subsequently used for metagenomic analysis, as well as for q-PCR analyses for specific species quantification. The element composition of the varnish coatings was analyzed and compared to the soil samples. Rock varnish shows similar depleted elements, compared to soil, but Mn and Pb are 50-60 times enriched compared to the soil samples, and about 100 times enriched compared to the upper continental crust. Our genomic analyses suggest unique populations and different protein functional groups occurring in the varnish compared to soil samples. We discuss these differences and try to shed light on the mechanism of Mn oxyhydroxide production in desert varnish formation.

Optimization of extraction procedures for ecotoxicity analyses: Use of TNT contaminated soil as a model

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sunahara, G.I.; Renoux, A.Y.; Dodard, S.

1995-12-31

The environmental impact of energetic substances (TNT, RDX, GAP, NC) in soil is being examined using ecotoxicity bioassays. An extraction method was characterized to optimize bioassay assessment of TNT toxicity in different soil types. Using the Microtox{trademark} (Photobacterium phosphoreum) assay and non-extracted samples, TNT was most acutely toxic (IC{sub 50} = 1--9 PPM) followed by RDX and GAP; NC did not show obvious toxicity (probably due to solubility limitations). TNT (in 0.25% DMSO) yielded an IC{sub 50} 0.98 + 0.10 (SD) ppm. The 96h-EC{sub 50} (Selenastrum capricornutum growth inhibition) of TNT (1. 1 ppm) was higher than GAP and RDX;more » NC was not apparently toxic (probably due to solubility limitations). Soil samples (sand or a silt-sand mix) were spiked with either 2,000 or 20,000 mg TNT/kg soil, and were adjusted to 20% moisture. Samples were later mixed with acetonitrile, sonicated, and then treated with CaCl{sub 2} before filtration, HPLC and ecotoxicity analyses. Results indicated that: the recovery of TNT from soil (97.51% {+-} 2.78) was independent of the type of soil or moisture content; CaCl{sub 2} interfered with TNT toxicity and acetonitrile extracts could not be used directly for algal testing. When TNT extracts were diluted to fixed concentrations, similar TNT-induced ecotoxicities were generally observed and suggested that, apart from the expected effects of TNT concentrations in the soil, the soil texture and the moisture effects were minimal. The extraction procedure permits HPLC analyses as well as ecotoxicity testing and minimizes secondary soil matrix effects. Studies will be conducted to study the toxic effects of other energetic substances present in soil using this approach.« less

Determination of diagnostic standards on saturated soil extracts for cut roses grown in greenhouses.

PubMed

Franco-Hermida, John Jairo; Quintero, María Fernanda; Cabrera, Raúl Iskander; Guzman, José Miguel

2017-01-01

This work comprises the theoretical determination and validation of diagnostic standards for the analysis of saturated soil extracts for cut rose flower crops (Rosa spp.) growing in the Bogota Plateau, Colombia. The data included 684 plant tissue analyses and 684 corresponding analyses of saturated soil extracts, all collected between January 2009 and June 2013. The tissue and soil samples were selected from 13 rose farms, and from cultivars grafted on the 'Natal Briar' rootstock. These concurrent samples of soil and plant tissues represented 251 production units (locations) of approximately 10,000 m2 distributed across the study area. The standards were conceived as a tool to improve the nutritional balance in the leaf tissue of rose plants and thereby define the norms for expressing optimum productive potential relative to nutritional conditions in the soil. To this end, previously determined diagnostic standard for rose leaf tissues were employed to obtain rates of foliar nutritional balance at each analyzed location and as criteria for determining the diagnostic norms for saturated soil extracts. Implementing this methodology to foliar analysis, showed a higher significant correlation for diagnostic indices. A similar behavior was observed in saturated soil extracts analysis, becoming a powerful tool for integrated nutritional diagnosis. Leaf analyses determine the most limiting nutrients for high yield and analyses of saturated soil extracts facilitate the possibility of correcting the fertigation formulations applied to soils or substrates. Recommendations are proposed to improve the balance in soil-plant system with which the possibility of yield increase becomes more probable. The main recommendations to increase and improve rose crop flower yields would be: continuously check pH values of SSE, reduce the amounts of P, Fe, Zn and Cu in fertigation solutions and carefully analyze the situation of Mn in the soil-plant system.

Comparative analysis of bones, mites, soil chemistry, nematodes and soil micro-eukaryotes from a suspected homicide to estimate the post-mortem interval.

PubMed

Szelecz, Ildikó; Lösch, Sandra; Seppey, Christophe V W; Lara, Enrique; Singer, David; Sorge, Franziska; Tschui, Joelle; Perotti, M Alejandra; Mitchell, Edward A D

2018-01-08

Criminal investigations of suspected murder cases require estimating the post-mortem interval (PMI, or time after death) which is challenging for long PMIs. Here we present the case of human remains found in a Swiss forest. We have used a multidisciplinary approach involving the analysis of bones and soil samples collected beneath the remains of the head, upper and lower body and "control" samples taken a few meters away. We analysed soil chemical characteristics, mites and nematodes (by microscopy) and micro-eukaryotes (by Illumina high throughput sequencing). The PMI estimate on hair 14 C-data via bomb peak radiocarbon dating gave a time range of 1 to 3 years before the discovery of the remains. Cluster analyses for soil chemical constituents, nematodes, mites and micro-eukaryotes revealed two clusters 1) head and upper body and 2) lower body and controls. From mite evidence, we conclude that the body was probably brought to the site after death. However, chemical analyses, nematode community analyses and the analyses of micro-eukaryotes indicate that decomposition took place at least partly on site. This study illustrates the usefulness of combining several lines of evidence for the study of homicide cases to better calibrate PMI inference tools.

The distribution of selected elements and minerals in soil of the conterminous United States

USGS Publications Warehouse

Woodruff, Laurel G.; Cannon, William F.; Smith, David; Solano, Federico

2015-01-01

In 2007, the U.S. Geological Survey initiated a low-density (1 site per 1600 km2, 4857 sites) geochemical and mineralogical survey of soil of the conterminous United States as part of the North American Soil Geochemical Landscapes Project. Three soil samples were collected, if possible, from each site; (1) a sample from a depth of 0 to 5 cm, (2) a composite of the soil A-horizon, and (3) a deeper sample from the soil C-horizon or, if the top of the C-horizon was at a depth greater than 100 cm, from a depth of approximately 80–100 cm. The < 2 mm fraction of each sample was analysed for a suite of 45 major and trace elements following near-total multi-acid digestion. The major mineralogical components in samples from the soil A- and C-horizons were determined by a quantitative X-ray diffraction method using Rietveld refinement. Sampling ended in 2010 and chemical and mineralogical analyses were completed in May 2013. Maps of the conterminous United States showing predicted element and mineral concentrations were interpolated from actual soil data for each soil sample type by an inverse distance weighted (IDW) technique using ArcGIS software. Regional- and national-scale map patterns for selected elements and minerals apparent in interpolated maps are described here in the context of soil-forming factors and possible human inputs. These patterns can be related to (1) soil parent materials, for example, in the distribution of quartz, (2) climate impacts, for example, in the distribution of feldspar and kaolinite, (3) soil age, for example, in the distribution of carbonate in young glacial deposits, and (4) possible anthropogenic loading of phosphorus (P) and lead (Pb) to surface soil. This new geochemical and mineralogical data set for the conterminous United States represents a major step forward from prior national-scale soil geochemistry data and provides a robust soil data framework for the United States now and into the future.

Estimates of potential childhood lead exposure from contaminated soil using the US EPA IEUBK Model in Sydney, Australia.

PubMed

Laidlaw, Mark A S; Mohmmad, Shaike M; Gulson, Brian L; Taylor, Mark P; Kristensen, Louise J; Birch, Gavin

2017-07-01

Surface soils in portions of the Sydney (New South Wales, Australia) urban area are contaminated with lead (Pb) primarily from past use of Pb in gasoline, the deterioration of exterior lead-based paints, and industrial activities. Surface soil samples (n=341) were collected from a depth of 0-2.5cm at a density of approximately one sample per square kilometre within the Sydney estuary catchment and analysed for lead. The bioaccessibility of soil Pb was analysed in 18 samples. The blood lead level (BLL) of a hypothetical 24 month old child was predicted at soil sampling sites in residential and open land use using the United States Environmental Protection Agency (US EPA) Integrated Exposure Uptake and Biokinetic (IEUBK) model. Other environmental exposures used the Australian National Environmental Protection Measure (NEPM) default values. The IEUBK model predicted a geometric mean BLL of 2.0±2.1µg/dL using measured soil lead bioavailability measurements (bioavailability =34%) and 2.4±2.8µg/dL using the Australian NEPM default assumption (bioavailability =50%). Assuming children were present and residing at the sampling locations, the IEUBK model incorporating soil Pb bioavailability predicted that 5.6% of the children at the sampling locations could potentially have BLLs exceeding 5µg/dL and 2.1% potentially could have BLLs exceeding 10µg/dL. These estimations are consistent with BLLs previously measured in children in Sydney. Copyright © 2017 Elsevier Inc. All rights reserved.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Taylor, B.B.; Ripp, J.; Sims, R.C.

The Electric Power Research Institute (EPRI) is studying the environmental impact of preservatives associated with in-service utility poles. As part of this endeavor, two EPRI contractors, META Environmental, Inc. (META) and Atlantic Environmental Services, Inc. (Atlantic), have collected soil samples from around wood utility poles nationwide, for various chemical and physical analyses. This report covers the results for 107 pole sites in the US. These pole sites included a range of preservative types, soil types, wood types, pole sizes, and in-service ages. The poles in this study were preserved with one of two types of preservative: pentachlorophenol (PCP) or creosote.more » Approximately 40 to 50 soil samples were collected from each wood pole site in this study. The soil samples collected from the pole sites were analyzed for chlorinated phenols and total petroleum hydrocarbons (TPH) if the pole was preserved with PCP, or for polycyclic aromatic hydrocarbons (PAHs) if the pole was preserved with creosote. The soil samples were also analyzed for physical/chemical parameters, such as pH, total organic carbon (TOC), and cationic exchange capacity (CEC). Additional samples were used in studies to determine biological degradation rates, and soil-water distribution and retardation coefficients of PCP in site soils. Methods of analysis followed standard EPA and ASTM methods, with some modifications in the chemical analyses to enable the efficient processing of many samples with sufficiently low detection limits for this study. All chemical, physical, and site-specific data were stored in a relational computer database.« less

Response of Partially Saturated Non-cohesive Soils

NASA Astrophysics Data System (ADS)

Świdziński, Waldemar; Mierczyński, Jacek; Mikos, Agata

2017-12-01

This paper analyses and discusses experimental results of undrained triaxial tests. The tests were performed on non-cohesive partially saturated soil samples subjected to monotonic and cyclic loading. The tests were aimed at determining the influence of saturation degree on soil's undrained response (shear strength, excess pore pressure generation). The saturation of samples was monitored by checking Skempton's parameter B. Additionally, seismic P-wave velocity measurements were carried out on samples characterized by various degrees of saturation. The tests clearly showed that liquefaction may also take place in non-cohesive soils that are not fully saturated and that the liquefaction potential of such soils strongly depends on the B parameter.

PREDICTED GROUND WATER, SOIL AND SOIL GAS IMPACTS FROM U.S. GASOLINES, 2004, FIRST ANALYSIS OF THE AUTUMNAL DATA

EPA Science Inventory

Ninety six gasoline samples were collected from around the U.S. in Autumn 2004. A detailed hydrocarbon analysis was performed on each sample resulting in a data set of approximately 300 chemicals per sample. Statistical analyses were performed on the entire suite of reported chem...

Spatial distribution and enteroparasite contamination in peridomiciliar soil and water in the Apucaraninha Indigenous Land, southern Brazil.

PubMed

da Silva, Joseane Balan; Piva, Camila; Falavigna-Guilherme, Ana Lúcia; Rossoni, Diogo Francisco; de Ornelas Toledo, Max Jean

2016-04-01

The prevalence and distribution of soil and water samples contaminated with enteroparasites of humans and animals with zoonotic potential (EHAZP) in Apucaraninha Indigenous Land (AIL), southern Brazil, was evaluated. An environmental survey was conducted to evaluate the presence of parasitic forms in peridomiciliary soil and associated variables. Soil samples were collected from 40/293 domiciles (10 domiciles per season), from November 2010 to June 2011, and evaluated by modified methods of Faust et al. and Lutz. Analyses of water from seven consumption sites were also performed. The overall prevalence of soil samples contaminated by EHAZP was 23.8 %. The most prevalent parasitic forms were cyst of Entamoeba spp. and eggs of Ascaris spp. The highest prevalence of contaminated soil samples was observed in winter (31 %). The probability map obtained with geostatistical analyses showed an average of 47 % soil contamination at a distance of approximately 140 m. The parasitological analysis of water did not detect Giardia spp. or Cryptosporidium spp. and showed that all collection points were within the standards of the Brazilian law. However, the microbiological analysis showed the presence of Escherichia coli in 6/7 sampled points. Despite the low level of contamination by EHAZP in peridomiciliar soil and the absence of pathogenic protozoa in water, the AIL soil and water (due to the presence of fecal coliforms) are potential sources of infection for the population, indicating the need for improvements in sanitation and water treatment, in addition periodic treatment of the population with antiparasitic.

A novel method for soil aggregate stability measurement by laser granulometry with sonication

NASA Astrophysics Data System (ADS)

Rawlins, B. G.; Lark, R. M.; Wragg, J.

2012-04-01

Regulatory authorities need to establish rapid, cost-effective methods to measure soil physical indicators - such as aggregate stability - which can be applied to large numbers of soil samples to detect changes of soil quality through monitoring. Limitations of sieve-based methods to measure the stability of soil macro-aggregates include: i) the mass of stable aggregates is measured, only for a few, discrete sieve/size fractions, ii) no account is taken of the fundamental particle size distribution of the sub-sampled material, and iii) they are labour intensive. These limitations could be overcome by measurements with a Laser Granulometer (LG) instrument, but this technology has not been widely applied to the quantification of aggregate stability of soils. We present a novel method to quantify macro-aggregate (1-2 mm) stability. We measure the difference between the mean weight diameter (MWD; μm) of aggregates that are stable in circulating water of low ionic strength, and the MWD of the fundamental particles of the soil to which these aggregates are reduced by sonication. The suspension is circulated rapidly through a LG analytical cell from a connected vessel for ten seconds; during this period hydrodynamic forces associated with the circulating water lead to the destruction of unstable aggregates. The MWD of stable aggregates is then measured by LG. In the next step, the aggregates - which are kept in the vessel at a minimal water circulation speed - are subject to sonication (18W for ten minutes) so the vast majority of the sample is broken down into its fundamental particles. The suspension is then recirculated rapidly through the LG and the MWD measured again. We refer to the difference between these two measurements as disaggregation reduction (DR) - the reduction in MWD on disaggregation by sonication. Soil types with more stable aggregates have larger values of DR. The stable aggregates - which are resistant to both slaking and mechanical breakdown by the hydrodynamic forces during circulation - are disrupted only by sonication. We used this method to compare macro-aggregate (1-2 mm) stability of air-dried agricultural topsoils under conventional tillage developed from two contrasting parent material types and compared the results with an alternative sieve-based technique. The first soil from the Midlands of England (developed from sedimentary mudstone; mean soil organic carbon (SOC) 2.5%) contained a substantially larger amount of illite/smectite (I/S) minerals compared to the second from the Wensum catchment in eastern England (developed from sands and glacial deposits; mean SOC=1.7%). The latter soils are prone to large erosive losses of fine sediment. Both sets of samples had been stored air-dried for 6 months prior to aggregate analyses. The mean values of DR (n=10 repeated subsample analyses) for the Midlands soil was 178μm; mean DR (n=10 repeat subsample analyses) for the Wensum soil was 30μm. The large difference in DR is most likely due to differences in soil mineralogy. The coefficient of variation of mean DR for duplicate analyses of sub-samples from the two topsoil types is around 10%. The majority of this variation is likely to be related to the difference in composition of the sub-samples. A standard, aggregated material could be included in further analyses to determine the relative magnitude of sub-sampling and analytical variance for this measurement technique. We then used the technique to investigate whether - as previously observed - variations (range 1000 - 4000 mg kg-1) in the quantity of amorphous (oxalate extractable) iron oxyhydroxides in a variety of soil samples (n=30) from the Wensum area (range SOC 1 - 2%) could account for differences in aggregate stability of these samples.

Analyses and descriptions of geochemical samples from the Rich Mountain Roadless Area, Fannin and Gilmer counties, Georgia

USGS Publications Warehouse

Sears, C.M.; Foose, M.P.; Day, G.W.; Ericksen, M.S.

1983-01-01

Semi-quantitative spectrographic analyses for 31 elements on rock, soil, fine-grained stream sediment, bulk stream sediment, and panned stream sediment samples collected in the Rich Mountain Roadless Area, Fannin and Gilmer Counties, Georgia, are reported here. Atomic absorption analyses for gold and fluorometric analyses for uranium are also reported. Brief descriptions of all rock samples analyzed are included.

Area G perimeter surface-soil and single-stage water sampling: Environmental surveillance for fiscal year 95. Progress report

DOE Office of Scientific and Technical Information (OSTI.GOV)

Childs, M.; Conrad, R.

1997-09-01

ESH-19 personnel collected soil and single-stage water samples around the perimeter of Area G at Los Alamos National Laboratory (LANL) during FY 95 to characterize possible radionuclide movement out of Area G through surface water and entrained sediment runoff. Soil samples were analyzed for tritium, total uranium, isotopic plutonium, americium-241, and cesium-137. The single-stage water samples were analyzed for tritium and plutonium isotopes. All radiochemical data was compared with analogous samples collected during FY 93 and 94 and reported in LA-12986 and LA-13165-PR. Six surface soils were also submitted for metal analyses. These data were included with similar data generatedmore » for soil samples collected during FY 94 and compared with metals in background samples collected at the Area G expansion area.« less

Combined Analyses of Bacterial, Fungal and Nematode Communities in Andosolic Agricultural Soils in Japan

PubMed Central

Bao, Zhihua; Ikunaga, Yoko; Matsushita, Yuko; Morimoto, Sho; Takada-Hoshino, Yuko; Okada, Hiroaki; Oba, Hirosuke; Takemoto, Shuhei; Niwa, Shigeru; Ohigashi, Kentaro; Suzuki, Chika; Nagaoka, Kazunari; Takenaka, Makoto; Urashima, Yasufumi; Sekiguchi, Hiroyuki; Kushida, Atsuhiko; Toyota, Koki; Saito, Masanori; Tsushima, Seiya

2012-01-01

We simultaneously examined the bacteria, fungi and nematode communities in Andosols from four agro-geographical sites in Japan using polymerase chain reaction-denaturing gradient gel electrophoresis (PCR-DGGE) and statistical analyses to test the effects of environmental factors including soil properties on these communities depending on geographical sites. Statistical analyses such as Principal component analysis (PCA) and Redundancy analysis (RDA) revealed that the compositions of the three soil biota communities were strongly affected by geographical sites, which were in turn strongly associated with soil characteristics such as total C (TC), total N (TN), C/N ratio and annual mean soil temperature (ST). In particular, the TC, TN and C/N ratio had stronger effects on bacterial and fungal communities than on the nematode community. Additionally, two-way cluster analysis using the combined DGGE profile also indicated that all soil samples were classified into four clusters corresponding to the four sites, showing high site specificity of soil samples, and all DNA bands were classified into four clusters, showing the coexistence of specific DGGE bands of bacteria, fungi and nematodes in Andosol fields. The results of this study suggest that geography relative to soil properties has a simultaneous impact on soil microbial and nematode community compositions. This is the first combined profile analysis of bacteria, fungi and nematodes at different sites with agricultural Andosols. PMID:22223474

Combined analyses of bacterial, fungal and nematode communities in andosolic agricultural soils in Japan.

PubMed

Bao, Zhihua; Ikunaga, Yoko; Matsushita, Yuko; Morimoto, Sho; Takada-Hoshino, Yuko; Okada, Hiroaki; Oba, Hirosuke; Takemoto, Shuhei; Niwa, Shigeru; Ohigashi, Kentaro; Suzuki, Chika; Nagaoka, Kazunari; Takenaka, Makoto; Urashima, Yasufumi; Sekiguchi, Hiroyuki; Kushida, Atsuhiko; Toyota, Koki; Saito, Masanori; Tsushima, Seiya

2012-01-01

We simultaneously examined the bacteria, fungi and nematode communities in Andosols from four agro-geographical sites in Japan using polymerase chain reaction-denaturing gradient gel electrophoresis (PCR-DGGE) and statistical analyses to test the effects of environmental factors including soil properties on these communities depending on geographical sites. Statistical analyses such as Principal component analysis (PCA) and Redundancy analysis (RDA) revealed that the compositions of the three soil biota communities were strongly affected by geographical sites, which were in turn strongly associated with soil characteristics such as total C (TC), total N (TN), C/N ratio and annual mean soil temperature (ST). In particular, the TC, TN and C/N ratio had stronger effects on bacterial and fungal communities than on the nematode community. Additionally, two-way cluster analysis using the combined DGGE profile also indicated that all soil samples were classified into four clusters corresponding to the four sites, showing high site specificity of soil samples, and all DNA bands were classified into four clusters, showing the coexistence of specific DGGE bands of bacteria, fungi and nematodes in Andosol fields. The results of this study suggest that geography relative to soil properties has a simultaneous impact on soil microbial and nematode community compositions. This is the first combined profile analysis of bacteria, fungi and nematodes at different sites with agricultural Andosols.

Soil characterisation by bacterial community analysis for forensic applications: A quantitative comparison of environmental technologies.

PubMed

Habtom, Habteab; Demanèche, Sandrine; Dawson, Lorna; Azulay, Chen; Matan, Ofra; Robe, Patrick; Gafny, Ron; Simonet, Pascal; Jurkevitch, Edouard; Pasternak, Zohar

2017-01-01

The ubiquity and transferability of soil makes it a resource for the forensic investigator, as it can provide a link between agents and scenes. However, the information contained in soils, such as chemical compounds, physical particles or biological entities, is seldom used in forensic investigations; due mainly to the associated costs, lack of available expertise, and the lack of soil databases. The microbial DNA in soil is relatively easy to access and analyse, having thus the potential to provide a powerful means for discriminating soil samples or linking them to a common origin. We compared the effectiveness and reliability of multiple methods and genes for bacterial characterisation in the differentiation of soil samples: ribosomal intergenic spacer analysis (RISA), terminal restriction fragment length polymorphism (TRFLP) of the rpoB gene, and five methods using the 16S rRNA gene: phylogenetic microarrays, TRFLP, and high throughput sequencing with Roche 454, Illumina MiSeq and IonTorrent PGM platforms. All these methods were also compared to long-chain hydrocarbons (n-alkanes) and fatty alcohol profiling of the same soil samples. RISA, 16S TRFLP and MiSeq performed best, reliably and significantly discriminating between adjacent, similar soil types. As TRFLP employs the same capillary electrophoresis equipment and procedures used to analyse human DNA, it is readily available for use in most forensic laboratories. TRFLP was optimized for forensic usage in five parameters: choice of primer pair, fluorescent tagging, concentrating DNA after digestion, number of PCR amplifications per sample and number of capillary electrophoresis runs per PCR amplification. This study shows that molecular microbial ecology methodologies are robust in discriminating between soil samples, illustrating their potential usage as an evaluative forensic tool. Copyright © 2016 Elsevier Ireland Ltd. All rights reserved.

Gemas: issues from the comparison of aqua regia and X-ray fluorescence results

NASA Astrophysics Data System (ADS)

Dinelli, Enrico; Birke, Manfred; Reimann, Clemens; Demetriades, Alecos; DeVivo, Benedetto; Flight, Dee; Ladenberger, Anna; Albanese, Stefano; Cicchella, Domenico; Lima, Annamaria

2014-05-01

The comparison of analytical results from aqua regia (AR) and X-ray fluorescence spectroscopy (XRF) can provide information on soil processes controlling the element distribution. The GEMAS (GEochemical Mapping of Agricultural and grazing land Soils) agricultural soil database is used for this comparison. Analyses for the same suite of elements and parameters were carried out in the same laboratory under strict quality control procedures. Sample preparation has been conducted at the laboratory of the The comparison of analytical results from aqua regia (AR) and X-ray fluorescence spectroscopy (XRF) can provide information on soil processes controlling the element distribution in soil. The GEMAS (GEochemical Mapping of Agricultural and grazing land Soils) agricultural soil database, consisting of 2 x ca. 2100 samples spread evenly over 33 European countries, is used for this comparison. Analyses for the same suite of elements and parameters were carried out in the same laboratory under strict quality control procedures. Sample preparation has been conducted at the laboratory of the Geological Survey of the Slovak Republic, AR analyses were carried out at ACME Labs, and XRF analyses at the Federal Institute for Geosciences and Natural Resources, Germany Element recovery by AR is very different, ranging from <1% (e.g. Na, Zr) to > 80% (e.g. Mn, P, Co). Recovery is controlled by mineralogy of the parent material, but geographic and climatic factors and the weathering history of the soils are also important. Nonetheless, even the very low recovery elements show wide ranges of variation and spatial patterns that are affected by other factors than soil parent material. For many elements soil pH have a clear influence on AR extractability: under acidic soil conditions almost all elements tend to be leached and their extractability is generally low. It progressively increases with increasing pH and is highest in the pH range 7-8. Critical is the clay content of the soil that almost for all elements correspond to higher extractability with increasing clay abundance. Also other factors such as organic matter content of soil, Fe and Mn occurrence are important for certain elements or in selected areas. This work illustrates that there are significant differences in the extractability of elements from soils and addresses important influencing factors related to soil properties, geology, climate.

AIR DRYING AND PRETREATMENT EFFECTS ON SOIL SULFATE SORPTION

EPA Science Inventory

Drying, freezing, and refrigeration are commonly employed to facilitate the handling and storage of soil samples on which chemical, biological and physical analyses are to be performed. hese laboratory protocol have the potential to alter soil chemical characteristics and may res...

Concentrations, Distribution and Persistence of Fluorotelomer Alcohols in Sludge-Applied Soils near Decatur, Alabama, USA

EPA Science Inventory

Soil samples were collected for fluorotelomer alcohol (FTOH) analyses from six fields to which sludge had been applied and one “background” field that had not received sludge. Ten analytes in soil extracts were quantified using GC/MS. Sludge-applied fields had surface soil FTOH c...

Quantitative evaluation of the CEEM soil sampling intercomparison.

PubMed

Wagner, G; Lischer, P; Theocharopoulos, S; Muntau, H; Desaules, A; Quevauviller, P

2001-01-08

The aim of the CEEM soil project was to compare and to test the soil sampling and sample preparation guidelines used in the member states of the European Union and Switzerland for investigations of background and large-scale contamination of soils, soil monitoring and environmental risk assessments. The results of the comparative evaluation of the sampling guidelines demonstrated that, in soil contamination studies carried out with different sampling strategies and methods, comparable results can hardly be expected. Therefore, a reference database (RDB) was established by the organisers, which acted as a basis for the quantitative comparison of the participants' results. The detected deviations were related to the methodological details of the individual strategies. The comparative evaluation concept consisted of three steps: The first step was a comparison of the participants' samples (which were both centrally and individually analysed) between each other, as well as with the reference data base (RDB) and some given soil quality standards on the level of concentrations present. The comparison was made using the example of the metals cadmium, copper, lead and zinc. As a second step, the absolute and relative deviations between the reference database and the participants' results (both centrally analysed under repeatability conditions) were calculated. The comparability of the samples with the RDB was categorised on four levels. Methods of exploratory statistical analysis were applied to estimate the differential method bias among the participants. The levels of error caused by sampling and sample preparation were compared with those caused by the analytical procedures. As a third step, the methodological profiles of the participants were compiled to concisely describe the different procedures used. They were related to the results to find out the main factors leading to their incomparability. The outcome of this evaluation process was a list of strategies and methods, which are problematic with respect to comparability, and should be standardised and/or specified in order to arrive at representative and comparable results in soil contamination studies throughout Europe. Pre-normative recommendations for harmonising European soil sampling guidelines and standard operating procedures have been outlined in Wagner G, Desules A, Muntau H, Theocharopoulos S. Comparative Evaluation of European Methods for Sampling and Sample Preparation of Soils for Inorganic Analysis (CEEM Soil). Final Report of the Contract SMT4-CT96-2085, Sci Total Environ 2001;264:181-186. Wagner G, Desaules A, Munatu H. Theocharopolous S, Quevauvaller Ph. Suggestions for harmonising sampling and sample pre-treatment procedures and improving quality assurance in pre-analytical steps of soil contamination studies. Paper 1.7 Sci Total Environ 2001b;264:103-118.

Influence of geogenic factors on microbial communities in metallogenic Australian soils

PubMed Central

Reith, Frank; Brugger, Joel; Zammit, Carla M; Gregg, Adrienne L; Goldfarb, Katherine C; Andersen, Gary L; DeSantis, Todd Z; Piceno, Yvette M; Brodie, Eoin L; Lu, Zhenmei; He, Zhili; Zhou, Jizhong; Wakelin, Steven A

2012-01-01

Links between microbial community assemblages and geogenic factors were assessed in 187 soil samples collected from four metal-rich provinces across Australia. Field-fresh soils and soils incubated with soluble Au(III) complexes were analysed using three-domain multiplex-terminal restriction fragment length polymorphism, and phylogenetic (PhyloChip) and functional (GeoChip) microarrays. Geogenic factors of soils were determined using lithological-, geomorphological- and soil-mapping combined with analyses of 51 geochemical parameters. Microbial communities differed significantly between landforms, soil horizons, lithologies and also with the occurrence of underlying Au deposits. The strongest responses to these factors, and to amendment with soluble Au(III) complexes, was observed in bacterial communities. PhyloChip analyses revealed a greater abundance and diversity of Alphaproteobacteria (especially Sphingomonas spp.), and Firmicutes (Bacillus spp.) in Au-containing and Au(III)-amended soils. Analyses of potential function (GeoChip) revealed higher abundances of metal-resistance genes in metal-rich soils. For example, genes that hybridised with metal-resistance genes copA, chrA and czcA of a prevalent aurophillic bacterium, Cupriavidus metallidurans CH34, occurred only in auriferous soils. These data help establish key links between geogenic factors and the phylogeny and function within soil microbial communities. In particular, the landform, which is a crucial factor in determining soil geochemistry, strongly affected microbial community structures. PMID:22673626

Influence of geogenic factors on microbial communities in metallogenic Australian soils.

PubMed

Reith, Frank; Brugger, Joel; Zammit, Carla M; Gregg, Adrienne L; Goldfarb, Katherine C; Andersen, Gary L; DeSantis, Todd Z; Piceno, Yvette M; Brodie, Eoin L; Lu, Zhenmei; He, Zhili; Zhou, Jizhong; Wakelin, Steven A

2012-11-01

Links between microbial community assemblages and geogenic factors were assessed in 187 soil samples collected from four metal-rich provinces across Australia. Field-fresh soils and soils incubated with soluble Au(III) complexes were analysed using three-domain multiplex-terminal restriction fragment length polymorphism, and phylogenetic (PhyloChip) and functional (GeoChip) microarrays. Geogenic factors of soils were determined using lithological-, geomorphological- and soil-mapping combined with analyses of 51 geochemical parameters. Microbial communities differed significantly between landforms, soil horizons, lithologies and also with the occurrence of underlying Au deposits. The strongest responses to these factors, and to amendment with soluble Au(III) complexes, was observed in bacterial communities. PhyloChip analyses revealed a greater abundance and diversity of Alphaproteobacteria (especially Sphingomonas spp.), and Firmicutes (Bacillus spp.) in Au-containing and Au(III)-amended soils. Analyses of potential function (GeoChip) revealed higher abundances of metal-resistance genes in metal-rich soils. For example, genes that hybridised with metal-resistance genes copA, chrA and czcA of a prevalent aurophillic bacterium, Cupriavidus metallidurans CH34, occurred only in auriferous soils. These data help establish key links between geogenic factors and the phylogeny and function within soil microbial communities. In particular, the landform, which is a crucial factor in determining soil geochemistry, strongly affected microbial community structures.

SOIL AND FILL LABORATORY SUPPORT - 1991

EPA Science Inventory

The report gives results of soil analysis laboratory work by the University of Florida in Support of the Florida Radon Research Program (FRRP). Analyses were performed on soil and fill samples collected during 1991 by the FRRP Research House program and the New House Evaluation P...

Analysis of soil samples from Gebeng area using NAA technique

NASA Astrophysics Data System (ADS)

Elias, Md Suhaimi; Wo, Yii Mei; Hamzah, Mohd Suhaimi; Shukor, Shakirah Abd; Rahman, Shamsiah Ab; Salim, Nazaratul Ashifa Abdullah; Azman, Muhamad Azfar; Hashim, Azian

2017-01-01

Rapid development and urbanization will increase number of residence and industrial area. Without proper management and control of pollution, these will give an adverse effect to environment and human life. The objective of this study to identify and quantify key contaminants into the environment of the Gebeng area as a result of industrial and human activities. Gebeng area was gazetted as one of the industrial estate in Pahang state. Assessment of elemental pollution in soil of Gebeng area base on level of concentration, enrichment factor and geo-accumulation index. The enrichment factors (EFs) were determined by the elemental rationing method, whilst the geo-accumulation index (Igeo) by comparing of current to continental crustal average concentration of element. Twenty-seven of soil samples were collected from Gebeng area. Soil samples were analysed by using Neutron Activation Analyses (NAA) technique. The obtained data showed higher concentration of iron (Fe) due to abundance in soil compared to other elements. The results of enrichment factor showed that Gebeng area have enrich with elements of As, Br, Hf, Sb, Th and U. Base on the geo-accumulation index (Igeo) classification, the soil quality of Gebeng area can be classified as class 0, (uncontaminated) to Class 3, (moderately to heavily contaminated).

[Distribution of soil heavy metal and pollution evaluation on the different sampling scales in farmland on Yellow River irrigation area of Ningxia: a case study in Xingqing County of Yinchuan City].

PubMed

Wang, You-Qi; Bai, Yi-Ru; Wang, Jian-Yu

2014-07-01

Determining spatial distributions and analyses contamination condition of soil heavy metals play an important role in evaluation of the quality of agricultural ecological environment and the protection of food safety and human health. Topsoil samples (0-20 cm) from 223 sites in farmland were collected at two scales of sampling grid (1 m x 1 m, 10 m x 10 m) in the Yellow River irrigation area of Ningxia. The objectives of this study were to investigate the spatial variability of total copper (Cu), total zinc (Zn), total chrome (Cr), total cadmium (Cd) and total lead (Pb) on the two sampling scales by the classical and geostatistical analyses. The single pollution index (P(i)) and the Nemerow pollution index (P) were used to evaluate the soil heavy metal pollution. The classical statistical analyses showed that all soil heavy metals demonstrated moderate variability, the coefficient of variation (CV) changed in the following sequence: Cd > Pb > Cr > Zn > Cu. Geostatistical analyses showed that the nugget coefficient of Cd on the 10 m x 10 m scale and Pb on the 1 m x 1 m scale were 100% with pure nugget variograms, which showed weak variability affected by random factors. The nugget coefficient of the other indexes was less than 25%, which showed a strong variability affected by structural factors. The results combined with P(i) and P indicated that most soil heavy metals have slight pollution except total copper, and in general there were the trend of heavy metal accumulation in the study area.

Magnetic Grain-size Proxies in Loessic Soils and Their Potential use in Paleorainfall Reconstruction

NASA Astrophysics Data System (ADS)

Machac, T. A.; Geiss, C. E.; Zanner, C. W.

2005-05-01

As part of our ongoing rock-magnetic study of loessic soil profiles we sampled over 70 in Nebraska, Iowa, Missouri and Illinois. Our sampling sites are located in stable upland positions and extend along a rainfall gradient which ranges from an average annual precipitation of less than 500 mm/year in southwestern Nebraska to almost 1000 mm/year in central Missouri. Soil cores were obtained with the aid of a hydraulic soil probe, described and subsampled into small plastic bags. Samples were air-dried in the laboratory and the < 2mm fraction was used for magnetic analyses. We measured magnetic susceptibility X and several remanence parameters (ARM, IRM) for all samples. Hysteresis measurements, IRM acquisition curves and time dependence of IRM acquisition were measured for a subset of samples. All samples show magnetically enhanced A- and B-horizons, which results in increased values of X, ARM and IRM. Changes in the ratio of ARM/IRM suggest an increase in the relative abundance of stable single domain (SSD) particles. VRM analyses show that the upper soil horizons are enhanced in ultrafine superparamagnetic (SP) ferrimagnets as well. Changes in the relative abundance of SP and SSD ferrimagnets along our transsect correlates well with the modern precipitation gradient, suggesting the use of grain-size dependent magnetic parameter as a potential paleorainfall proxy when analyzing paleosols.

Evaluation of different approaches for identifying optimal sites to predict mean hillslope soil moisture content

NASA Astrophysics Data System (ADS)

Liao, Kaihua; Zhou, Zhiwen; Lai, Xiaoming; Zhu, Qing; Feng, Huihui

2017-04-01

The identification of representative soil moisture sampling sites is important for the validation of remotely sensed mean soil moisture in a certain area and ground-based soil moisture measurements in catchment or hillslope hydrological studies. Numerous approaches have been developed to identify optimal sites for predicting mean soil moisture. Each method has certain advantages and disadvantages, but they have rarely been evaluated and compared. In our study, surface (0-20 cm) soil moisture data from January 2013 to March 2016 (a total of 43 sampling days) were collected at 77 sampling sites on a mixed land-use (tea and bamboo) hillslope in the hilly area of Taihu Lake Basin, China. A total of 10 methods (temporal stability (TS) analyses based on 2 indices, K-means clustering based on 6 kinds of inputs and 2 random sampling strategies) were evaluated for determining optimal sampling sites for mean soil moisture estimation. They were TS analyses based on the smallest index of temporal stability (ITS, a combination of the mean relative difference and standard deviation of relative difference (SDRD)) and based on the smallest SDRD, K-means clustering based on soil properties and terrain indices (EFs), repeated soil moisture measurements (Theta), EFs plus one-time soil moisture data (EFsTheta), and the principal components derived from EFs (EFs-PCA), Theta (Theta-PCA), and EFsTheta (EFsTheta-PCA), and global and stratified random sampling strategies. Results showed that the TS based on the smallest ITS was better (RMSE = 0.023 m3 m-3) than that based on the smallest SDRD (RMSE = 0.034 m3 m-3). The K-means clustering based on EFsTheta (-PCA) was better (RMSE <0.020 m3 m-3) than these based on EFs (-PCA) and Theta (-PCA). The sampling design stratified by the land use was more efficient than the global random method. Forty and 60 sampling sites are needed for stratified sampling and global sampling respectively to make their performances comparable to the best K-means method (EFsTheta-PCA). Overall, TS required only one site, but its accuracy was limited. The best K-means method required <8 sites and yielded high accuracy, but extra soil and terrain information is necessary when using this method. The stratified sampling strategy can only be used if no pre-knowledge about soil moisture variation is available. This information will help in selecting the optimal methods for estimation the area mean soil moisture.

An alternative method for determining particle-size distribution of forest road aggregate and soil with large-sized particles

Treesearch

Hakjun Rhee; Randy B. Foltz; James L. Fridley; Finn Krogstad; Deborah S. Page-Dumroese

2014-01-01

Measurement of particle-size distribution (PSD) of soil with large-sized particles (e.g., 25.4 mm diameter) requires a large sample and numerous particle-size analyses (PSAs). A new method is needed that would reduce time, effort, and cost for PSAs of the soil and aggregate material with large-sized particles. We evaluated a nested method for sampling and PSA by...

Characterization of a Wide Array of Fluorinated Organic Compounds in Contaminated Soils

EPA Science Inventory

Herein we report the results of analyses on the concentrations of perfluorinated compounds (PFCs) and fluorotelomer alcohols (FTOHs) in soils from a site that has been impacted by human activities. Soil samples were collected from several locations that had been impacted and one...

Soil Sampling Techniques For Alabama Grain Fields

NASA Technical Reports Server (NTRS)

Thompson, A. N.; Shaw, J. N.; Mask, P. L.; Touchton, J. T.; Rickman, D.

2003-01-01

Characterizing the spatial variability of nutrients facilitates precision soil sampling. Questions exist regarding the best technique for directed soil sampling based on a priori knowledge of soil and crop patterns. The objective of this study was to evaluate zone delineation techniques for Alabama grain fields to determine which method best minimized the soil test variability. Site one (25.8 ha) and site three (20.0 ha) were located in the Tennessee Valley region, and site two (24.2 ha) was located in the Coastal Plain region of Alabama. Tennessee Valley soils ranged from well drained Rhodic and Typic Paleudults to somewhat poorly drained Aquic Paleudults and Fluventic Dystrudepts. Coastal Plain s o i l s ranged from coarse-loamy Rhodic Kandiudults to loamy Arenic Kandiudults. Soils were sampled by grid soil sampling methods (grid sizes of 0.40 ha and 1 ha) consisting of: 1) twenty composited cores collected randomly throughout each grid (grid-cell sampling) and, 2) six composited cores collected randomly from a -3x3 m area at the center of each grid (grid-point sampling). Zones were established from 1) an Order 1 Soil Survey, 2) corn (Zea mays L.) yield maps, and 3) airborne remote sensing images. All soil properties were moderately to strongly spatially dependent as per semivariogram analyses. Differences in grid-point and grid-cell soil test values suggested grid-point sampling does not accurately represent grid values. Zones created by soil survey, yield data, and remote sensing images displayed lower coefficient of variations (8CV) for soil test values than overall field values, suggesting these techniques group soil test variability. However, few differences were observed between the three zone delineation techniques. Results suggest directed sampling using zone delineation techniques outlined in this paper would result in more efficient soil sampling for these Alabama grain fields.

Influences of space, soil, nematodes and plants on microbial community composition of chalk grassland soils.

PubMed

Yergeau, Etienne; Bezemer, T Martijn; Hedlund, Katarina; Mortimer, Simon R; Kowalchuk, George A; Van Der Putten, Wim H

2010-08-01

Microbial communities respond to a variety of environmental factors related to resources (e.g. plant and soil organic matter), habitat (e.g. soil characteristics) and predation (e.g. nematodes, protozoa and viruses). However, the relative contribution of these factors on microbial community composition is poorly understood. Here, we sampled soils from 30 chalk grassland fields located in three different chalk hill ridges of Southern England, using a spatially explicit sampling scheme. We assessed microbial communities via phospholipid fatty acid (PLFA) analyses and PCR-denaturing gradient gel electrophoresis (DGGE) and measured soil characteristics, as well as nematode and plant community composition. The relative influences of space, soil, vegetation and nematodes on soil microorganisms were contrasted using variation partitioning and path analysis. Results indicate that soil characteristics and plant community composition, representing habitat and resources, shape soil microbial community composition, whereas the influence of nematodes, a potential predation factor, appears to be relatively small. Spatial variation in microbial community structure was detected at broad (between fields) and fine (within fields) scales, suggesting that microbial communities exhibit biogeographic patterns at different scales. Although our analysis included several relevant explanatory data sets, a large part of the variation in microbial communities remained unexplained (up to 92% in some analyses). However, in several analyses, significant parts of the variation in microbial community structure could be explained. The results of this study contribute to our understanding of the relative importance of different environmental and spatial factors in driving the composition of soil-borne microbial communities. © 2009 Society for Applied Microbiology and Blackwell Publishing Ltd.

Influence of the Soil Genesis on Physical and Mechanical Properties

PubMed Central

Marschalko, Marian; Yilmaz, Işık; Fojtová, Lucie; Kubečka, Karel; Bouchal, Tomáš; Bednárik, Martin

2013-01-01

The paper deals with the influence of soil genesis on the physical-mechanical properties. The presented case study was conducted in the region of the Ostrava Basin where there is a varied genetic composition of the Quaternary geological structure on the underlying Neogeneous sediments which are sediments of analogous granulometry but different genesis. In this study, 7827 soil samples of an eolian, fluvial, glacial, and deluvial origin and their laboratory analyses results were used. The study identified different values in certain cases, mostly in coarser-grained foundation soils, such as sandy loam S4 (MS) and clayey sand F4 (CS). The soils of the fluvial origin manifest different values than other genetic types. Next, based on regression analyses, dependence was proved neither on the deposition depth (depth of samples) nor from the point of view of the individual foundation soil classes or the genetic types. The contribution of the paper is to point at the influence of genesis on the foundation soil properties so that engineering geologists and geotechnicians pay more attention to the genesis during engineering-geological and geotechnical investigations. PMID:23844398

Determination of diagnostic standards on saturated soil extracts for cut roses grown in greenhouses

PubMed Central

Cabrera, Raúl Iskander

2017-01-01

This work comprises the theoretical determination and validation of diagnostic standards for the analysis of saturated soil extracts for cut rose flower crops (Rosa spp.) growing in the Bogota Plateau, Colombia. The data included 684 plant tissue analyses and 684 corresponding analyses of saturated soil extracts, all collected between January 2009 and June 2013. The tissue and soil samples were selected from 13 rose farms, and from cultivars grafted on the 'Natal Briar' rootstock. These concurrent samples of soil and plant tissues represented 251 production units (locations) of approximately 10,000 m2 distributed across the study area. The standards were conceived as a tool to improve the nutritional balance in the leaf tissue of rose plants and thereby define the norms for expressing optimum productive potential relative to nutritional conditions in the soil. To this end, previously determined diagnostic standard for rose leaf tissues were employed to obtain rates of foliar nutritional balance at each analyzed location and as criteria for determining the diagnostic norms for saturated soil extracts. Implementing this methodology to foliar analysis, showed a higher significant correlation for diagnostic indices. A similar behavior was observed in saturated soil extracts analysis, becoming a powerful tool for integrated nutritional diagnosis. Leaf analyses determine the most limiting nutrients for high yield and analyses of saturated soil extracts facilitate the possibility of correcting the fertigation formulations applied to soils or substrates. Recommendations are proposed to improve the balance in soil-plant system with which the possibility of yield increase becomes more probable. The main recommendations to increase and improve rose crop flower yields would be: continuously check pH values of SSE, reduce the amounts of P, Fe, Zn and Cu in fertigation solutions and carefully analyze the situation of Mn in the soil-plant system. PMID:28542547

CO2 emissions from organic soils under agricultural use

NASA Astrophysics Data System (ADS)

Bader, Cédric; Leifeld, Jens; Müller, Moritz; Schulin, Rainer

2015-04-01

The organic soils of peatlands represent a major global sink for terrestrial carbon. Agricultural use of organic soils requires drainage, changing conditions in these soils from anoxic to oxic. As a consequence, the organic carbon that had been accumulated often over millennia is rapidly mineralized, so that these soils then are no longer a sink but become a source of CO2. The aim of our study is to analyse the amount and origin of CO2 emitted from organic soils under three land-use types (forest, arable cropland and grassland). Our study area is located in the Bernese Lakeland (CH). The peatlands of this region were drained in the 1870ies, and the site as well as the surrounding area are now managed by a state prison. Since decades our study site is under the same land-use. In Oktober 2013 we took 4 replicate soil cores of all land-uses with respect to a certain distance from a major drainage ditch. Each core was analysed for its bulk density and carbon content. 9 soil samples from a depth of 20-30 cm were analysed for their F14C and δ13C values and later divided into 18 subsamples. Half of them were mixed with 0.2-0.4 g of labelled corn stalk enriched in δ13C (δ13C=2000) in order to mimic plant residue inputs in the field. The moisture content of these samples was equilibrated at a pF-value of 2 before incubating the samples in a Respicond VII analyser for several weeks at 20° C. By trapping the respired CO2 in NaOH and precipitating it as BaCO3 we were able to analyse its F14C and δ13C value. This enabled us to determine to what extent the CO2 originated from old peat, young plant residues or the added maize stalk. Generally the cropland samples showed the highest respiration rates, lowest F14C values and highest carbon stocks. The organic soils under the forest were degraded the most and showed low respiration rates. Analyzing the F14C values of the CO2 revealed that peat contributes most to the respiration and its degradation is fastest in the cropland. Our findings suggest that peat respiration must have been more intense under forest during the past 140 years. The addition of fresh plant material resulted in increased respiration rates but supressed the respiration of old peat in the cropland and grassland (negative priming).

Contamination valuation of soil and groundwater source at anaerobic municipal solid waste landfill site.

PubMed

Aziz, Shuokr Qarani; Maulood, Yousif Ismael

2015-12-01

The present work aimed to determine the risks that formed landfill leachate from anaerobic Erbil Landfill Site (ELS) poses on groundwater source and to observe the effects of disposed municipal solid waste (MSW) on soil properties. The study further aims to fill the gap in studies on the effects of disposed MSW and produced leachate on the groundwater characteristics and soil quality at ELS, Iraq. Soil, leachate, and groundwater samples were collected from ELS for use as samples in this study. Unpolluted groundwater samples were collected from an area outside of the landfill. Field and laboratory experiments for the soil samples were conducted. Chemical analyses for the soil samples such as organic matter, total salts, and SO4 (=) were also performed. Raw leachate and groundwater samples were analyzed using physical and chemical experiments. The yields for sorptivity, steady-state infiltration rate, and hydraulic conductivity of the soil samples were 0.0006 m/√s, 0.00004 m/s, and 2.17 × 10(-5) m/s, respectively. The soil at ELS was found to be light brown clayey gravel with sand and light brown gravely lean clay layers with low permeability. Unprocessed leachate analysis identified the leachate as stabilized. Findings showed that the soil and groundwater at the anaerobic ELS were contaminated.

A dual stable-isotope approach to analyse the linkages between tree water fluxes and soil water pools in a Mediterranean mountain catchment

NASA Astrophysics Data System (ADS)

Llorens, Pilar; Cayuela, Carles; Sánchez-Costa, Elisenda; Gallart, Francesc; Latron, Jérôme

2017-04-01

This work uses a dual isotope-based approach (18O, 2H) to examine the mixing of water in the soil and the linkages between tree water fluxes and soil water pools in a Mediterranean mountain catchment (Vallcebre Research Catchments, NE Spain, 42° 12'N, 1° 49'E). Since May 2015, water-isotopes have been monitored in rainfall, throughfall and stemflow below a Scots pine stand and in stream water at the Can Vila (0.56 km2) catchment outlet. Moreover, fortnightly (From May to December 2015) soil samples (10, 20, 30, 50 and 100 cm), xylem samples (3 Scots pines) and mobile soil water samples in low-suction lysimeters (20, 50 and 100 cm) and in a piezometer (150-300 cm deep) were collected at the same stand. Water from soil and xylem samples was extracted by cryogenic vacuum distillation and isotope analyses were obtained by infrared spectroscopy. All this information has been combined with continuous measurement of meteorological, soil moisture and water potential, piezometric levels and hydrological variables at the stand and catchment scales. Stable isotopes ratios of bound soil water fell below the local meteoric water line (LMWL), with more evaporative enrichment in the shallow horizons. On the contrary, mobile soil water (low suction lysimeters) and groundwater fell along the LMWL, well mixed with stream water. The differences observed between these two water pools remained similar during the whole study period. Stable isotopes ratios indicate that Scots pine trees use shallow bound soil water during the whole study period. No marked changes in depth of water uptake were observed, presumably due to the availability of water in the shallow horizons, even during the summer months.

Soil moisture variability across different scales in an Indian watershed for satellite soil moisture product validation

NASA Astrophysics Data System (ADS)

Singh, Gurjeet; Panda, Rabindra K.; Mohanty, Binayak P.; Jana, Raghavendra B.

2016-05-01

Strategic ground-based sampling of soil moisture across multiple scales is necessary to validate remotely sensed quantities such as NASA's Soil Moisture Active Passive (SMAP) product. In the present study, in-situ soil moisture data were collected at two nested scale extents (0.5 km and 3 km) to understand the trend of soil moisture variability across these scales. This ground-based soil moisture sampling was conducted in the 500 km2 Rana watershed situated in eastern India. The study area is characterized as sub-humid, sub-tropical climate with average annual rainfall of about 1456 mm. Three 3x3 km square grids were sampled intensively once a day at 49 locations each, at a spacing of 0.5 km. These intensive sampling locations were selected on the basis of different topography, soil properties and vegetation characteristics. In addition, measurements were also made at 9 locations around each intensive sampling grid at 3 km spacing to cover a 9x9 km square grid. Intensive fine scale soil moisture sampling as well as coarser scale samplings were made using both impedance probes and gravimetric analyses in the study watershed. The ground-based soil moisture samplings were conducted during the day, concurrent with the SMAP descending overpass. Analysis of soil moisture spatial variability in terms of areal mean soil moisture and the statistics of higher-order moments, i.e., the standard deviation, and the coefficient of variation are presented. Results showed that the standard deviation and coefficient of variation of measured soil moisture decreased with extent scale by increasing mean soil moisture.

Regional Geochemical Results from Analyses of Stream-Water, Stream-Sediment, Soil, Soil-Water, Bedrock, and Vegetation Samples, Tangle Lakes District, Alaska

USGS Publications Warehouse

Wang, Bronwen; Gough, L.P.; Wanty, R.B.; Lee, G.K.; Vohden, James; O'Neill, J. M.; Kerin, L.J.

2008-01-01

We report chemical analyses of stream-water, stream-sediment, soil, soil-water, bedrock, and vegetation samples collected from the headwaters of the Delta River (Tangle Lakes District, Mount Hayes 1:250,000-scale quadrangle) in east-central Alaska for the period June 20-25, 2006. Additionally, we present mineralogic analyses of stream sediment, concentrated by panning. The study area includes the southwestward extent of the Bureau of Land Management (BLM) Delta River Mining District (Bittenbender and others, 2007), including parts of the Delta River Archeological District, and encompasses an area of about 500 km2(approximately bordered by the Denali Highway to the south, near Round Tangle Lake, northward to the foothills of the Alaska Range (fig. 1). The primary focus of this study was the chemical characterization of native materials, especially surface-water and sediment samples, of first-order streams from the headwaters of the Delta River. The impetus for this work was the need, expressed by the Alaska Department of Natural Resources (ADNR), for an inventory of geochemical and hydrogeochemical baseline information about the Delta River Mining District. This information is needed because of a major upturn in exploration, drilling, and general mineral-resources assessments in the region since the late 1990s. Currently, the study area, called the 'MAN Project' area is being explored by Pure Nickel, Inc. (http://www.purenickel.com/s/MAN_Alaska.asp), and includes both Cu-Au-Ag and Ni-Cu-PGE (Pt-Pd-Au-Ag) mining claims. Geochemical data on surface-water, stream-sediment, soil, soil-water, grayleaf willow (Salix glauca L.), and limited bedrock samples are provided along with the analytical methodologies used and panned-concentrate mineralogy. We are releasing the data at this time with only minimal interpretation.

Multivariate analysis of the geochemistry and mineralogy of soils along two continental-scale transects in North America

USGS Publications Warehouse

Drew, L.J.; Grunsky, E.C.; Sutphin, D.M.; Woodruff, L.G.

2010-01-01

Soils collected in 2004 along two North American continental-scale transects were subjected to geochemical and mineralogical analyses. In previous interpretations of these analyses, data were expressed in weight percent and parts per million, and thus were subject to the effect of the constant-sum phenomenon. In a new approach to the data, this effect was removed by using centered log-ratio transformations to 'open' the mineralogical and geochemical arrays. Multivariate analyses, including principal component and linear discriminant analyses, of the centered log-ratio data reveal the effects of soil-forming processes, including soil parent material, weathering, and soil age, at the continental-scale of the data arrays that were not readily apparent in the more conventionally presented data. Linear discriminant analysis of the data arrays indicates that the majority of the soil samples collected along the transects can be more successfully classified with Level 1 ecological regional-scale classification by the soil geochemistry than soil mineralogy. A primary objective of this study is to discover and describe, in a parsimonious way, geochemical processes that are both independent and inter-dependent and manifested through compositional data including estimates of the elements and corresponding mineralogy. ?? 2010.

Identification of dust storm origin in South -West of Iran.

PubMed

Broomandi, Parya; Dabir, Bahram; Bonakdarpour, Babak; Rashidi, Yousef

2017-01-01

Deserts are the main sources of emitted dust, and are highly responsive to wind erosion. Low content of soil moisture and lack of vegetation cover lead to fine particle's release. One of the semi-arid bare lands in Iran, located in the South-West of Iran in Khoozestan province, was selected to investigate Sand and Dust storm potential. This paper focused on the metrological parameters of the sampling site, their changes and the relationship between these changes and dust storm occurrence, estimation of Reconaissance Drought Index, the Atterberg limits of soil samples and their relation with soil erosion ability, the chemical composition, size distribution of soil and airborne dust samples, and estimation of vertical mass flux by COMSALT through considering the effect of saffman force and interparticle cohesion forces during warm period (April-September) in 2010. The chemical compositions are measured with X-ray fluorescence, Atomic absorption spectrophotometer and X-ray diffraction. The particle size distribution analysis was conducted by using Laser particle size and sieve techniques. There was a strong negative correlation between dust storm occurrence and annual and seasonal rainfall and relative humidity. Positive strong correlation between annual and seasonal maximum temperature and dust storm frequency was seen. Estimation of RDI st in the studied period showed an extremely dry condition. Using the results of particle size distribution and soil consistency, the weak structure of soil was represented. X-ray diffraction analyses of soil and dust samples showed that soil mineralogy was dominated mainly by Quartz and calcite. X-ray fluorescence analyses of samples indicated that the most important major oxide compositions of the soil and airborne dust samples were SiO 2 , Al 2 O 3 , CaO, MgO, Na 2 O, and Fe 2 O 3 , demonstrating similar percentages for soil and dust samples. Estimation of Enrichment Factors for all studied trace elements in soil samples showed Br, Cl, Mo, S, Zn, and Hg with EF values higher than 10. The findings, showed the possible correlation between the degree of anthropogenic soil pollutants, and the remains of Iraq-Iran war. The results expressed sand and dust storm emission potential in this area, was illustrated with measured vertical mass fluxes by COMSALT.

Comparative Efficiency of the Fenwick Can and Schuiling Centrifuge in Extracting Nematode Cysts from Different Soil Types

PubMed Central

Bellvert, Joaquim; Crombie, Kieran; Horgan, Finbarr G.

2008-01-01

The Fenwick can and Schuiling centrifuge are widely used to extract nematode cysts from soil samples. The comparative efficiencies of these two methods during cyst extraction have not been determined for different soil types under different cyst densities. Such information is vital for statutory laboratories that must choose a method for routine, high-throughput soil monitoring. In this study, samples of different soil types seeded with varying densities of potato cyst nematode (Globodera rostochiensis) cysts were processed using both methods. In one experiment, with 200 ml samples, recovery was similar between methods. In a second experiment with 500 ml samples, cyst recovery was higher using the Schuiling centrifuge. For each method and soil type, cyst extraction efficiency was similar across all densities tested. Extraction was efficient from pure sand (Fenwick 72%, Schuiling 84%) and naturally sandy soils (Fenwick 62%, Schuiling 73%), but was significantly less efficient from clay-soil (Fenwick 42%, Schuiling 44%) and peat-soil with high organic matter content (Fenwick 35%, Schuiling 33%). Residual moisture (<10% w/w) in samples prior to analyses reduced extraction efficiency, particularly for sand and sandy soils. For each soil type and method, there were significant linear relationships between the number of cysts extracted and the numbers of cysts in the samples. We discuss the advantages and disadvantages of each extraction method for cyst extraction in statutory soil laboratories. PMID:19259516

Monitoring of Nitrate and Pesticide Pollution in Mnasra, Morocco Soil and Groundwater.

PubMed

Marouane, Bouchra; Dahchour, Abdelmalek; Dousset, Sylvie; El Hajjaji, Souad

2015-06-01

This study evaluates the levels of nitrates and pesticides occurring in groundwater and agricultural soil in the Mnasra, Morocco area, a zone with intensive agricultural activity. A set of 108 water samples and 68 soil samples were collected from ten selected sites in the area during agricultural seasons, from May 2010 to September 2012. The results reveal that 89.7% of water samples exceeded the standard limit of nitrate concentrations for groundwater (50 mg/L). These results can be explained by the prevailing sandy nature of the soil in the area, the frequency of fertilizer usage, and the shallow level of the water table, which favors the leaching of nitrate from field to groundwater. In contrast, the selected pesticide molecules were not detected in the analysed soil and water samples; levels were below the quantification limit in all samples. This situation could be explained by the probable partial or total transformation of the molecules in soil.

Soil discontinuities as potential factors of shallow landslides: a case study from Calabria, southern Italy

NASA Astrophysics Data System (ADS)

Scarciglia, Fabio; Morrone, Fabio; Pelle, Teresa; Buttafuoco, Gabriele; Conforti, Massimo; Muto, Francesco; Critelli, Salvatore; Fabbricatore, Davide; Filomena, Luciana; Rago, Valeria; Robustelli, Gaetano; Tripodi, Vincenzo; Versace, Pasquale

2015-04-01

Effects of chemical and physical weathering processes on different rock types as predisposing factors of a number of landslides are often investigated in detail. Conversely, very few research studies on triggering mechanisms of shallow landslides and related risk assessment are focused on evaluation of morphological and physical discontinuities caused by pedogenetic processes affecting parent materials. Also sampling strategies for geotechnical or hydrological laboratory analyses can be biased by the lack of detailed information about the soil spatial variability and of a consequent horizon-wise selection of samples from soil profiles. In this work we summarize the main results on the assessment of shallow landslide susceptibility along the A3 highway section between Cosenza Sud and Altilia in northern Calabria (southern Italy). This research is part of a wider project (PON01-01503: "Integrated systems for hydrogeological risk monitoring, early warning and mitigation along the main lifelines"), aimed at hydro-geological risk mitigation and early warning along three highway sections of southern Italy. Based on a detailed geological and geomorphological survey, the main lithological, structural and relief features of the landscape were mapped, with a special emphasis on active, dormant and inactive landslides and their geo-lithological control factors. A soil survey was also carried out in the field, showing a dominance of Entisols and Inceptisols on steep slopes, and Mollisols and Alfisols on gentle landforms. Soil observations were focused on the identification of pedological discontinuities as potential factors that might trigger shallow landslides. A number of soil profiles, often close to landslide scarps, evidenced significant morphological changes of the parent materials, such as texture, pedogenic structure, dry consistence and moisture, or hydromorphic features caused by transient water-logging conditions, and clay-illuviated horizons. Buried soils were recognized, often truncated by erosion, and overlain by younger soils developed on colluvia, debris flows and detrital slope deposits. Five representative soil profiles were selected and sampled for pedological, geotechnical and hydrological laboratory analyses. Bulk and undisturbed samples were collected for chemical and physical soil analyses (particle size distribution, organic and inorganic carbon, pH, electrical conductivity, soluble salts), for determining bulk density, Atterberg limits, cohesive strength, angle of internal friction, water retention and for thin sections to be observed under an optical polarizing microscope, respectively. Preliminary results of laboratory analyses showed irregular patterns of pedological (particle size distribution, organic matter content, bulk density), geotechnical (Atterberg limits) and hydrological data (water content, pore distribution) along the soil profiles, coherently with field observations.

Soil heavy metal contamination related to roasted stone coal slag: a study based on geostatistical and multivariate analyses.

PubMed

Li, De'an; Jiang, Jianguo; Li, Tianran; Wang, Jiaming

2016-07-01

Soil was examined for vanadium (V) and related metal contamination near a stone coal mine in Hubei Province, China. In total, 92 surface and vertical (0-200 cm) soil samples were collected from the site. A handheld X-ray fluorescence spectrometer was used for in situ analysis of the soil concentrations of heavy metals, including V, chromium (Cr), copper (Cu), manganese (Mn), zinc (Zn), and lead (Pb). The mean concentrations of these metals were 931, 721, 279, 223, 163, and 11 mg/kg, respectively. Based on the Chinese Environmental Quality Standard for Soils guidelines, up to 88.0, 76.1, and 56.5 % of the soil samples had single factor pollution indices >3 for V, Cr, and Cu, respectively. Furthermore, 2.2 % of samples were slightly polluted with Zn, while there was no Mn or Pb contamination. GaussAmp curve fitting was performed based on the sample frequency distribution of the Nemerow pollution index. The fitted mean was 5.99, indicating severe pollution. The heavy metals were clustered into two groups, V/Cr/Cu/Zn and Mn/Pb, based on the spatial distributions, the Pearson correlation and principal component analyses. The positive correlations within the V/Cr/Cu/Zn group suggested that they originated from roasted stone coal slag. Finally, the negative correlation between the two groups was attributed to mechanical mixing of the slag and original soil.

Soil compaction vulnerability at Organ Pipe Cactus National Monument, Arizona

USGS Publications Warehouse

Webb, Robert H.; Nussear, Kenneth E.; Carmichael, Shinji; Esque, Todd C.

2014-01-01

Compaction vulnerability of different types of soils by hikers and vehicles is poorly known, particularly for soils of arid and semiarid regions. Engineering analyses have long shown that poorly sorted soils (for example, sandy loams) compact to high densities, whereas well-sorted soils (for example, eolian sand) do not compact, and high gravel content may reduce compaction. Organ Pipe Cactus National Monument (ORPI) in southwestern Arizona, is affected greatly by illicit activities associated with the United States–Mexico border, and has many soils that resource managers consider to be highly vulnerable to compaction. Using geospatial soils data for ORPI, compaction vulnerability was estimated qualitatively based on the amount of gravel and the degree of sorting of sand and finer particles. To test this qualitative assessment, soil samples were collected from 48 sites across all soil map units, and undisturbed bulk densities were measured. A scoring system was used to create a vulnerability index for soils on the basis of particle-size sorting, soil properties derived from Proctor compaction analyses, and the field undisturbed bulk densities. The results of the laboratory analyses indicated that the qualitative assessments of soil compaction vulnerability underestimated the area of high vulnerability soils by 73 percent. The results showed that compaction vulnerability of desert soils, such as those at ORPI, can be quantified using laboratory tests and evaluated using geographic information system analyses, providing a management tool that managers potentially could use to inform decisions about activities that reduce this type of soil disruption in protected areas.

Inter-laboratory variation in the chemical analysis of acidic forest soil reference samples from eastern North America

Treesearch

D.S. Ross; S.W. Bailey; R.D. Briggs; J. Curry; I.J. Fernandez; G. Fredriksen; C.L. Goodale; P.W. Hazlett; P.R. Heine; C.E. Johnson; J.T. Larson; G.B. Lawrence; R.K. Kolka; R. Ouimet; D. Pare; D. deB Richter; C.D. Schirmer; R.A. Warby

2015-01-01

Long-term forest soil monitoring and research often requires a comparison of laboratory data generated at different times and in different laboratories. Quantifying the uncertainty associated with these analyses is necessary to assess temporal changes in soil properties. Forest soil chemical properties, and methods to measure these properties, often differ from...

Officine Galileo for Mars Exploration

NASA Astrophysics Data System (ADS)

Battistelli, E.; Tacconi, M.

1999-09-01

The interest for Mars's exploration is continuously increasing. Officine Galileo is engaged in this endeavor with several programmes. The exobiology is, of course, a stimulating field; presently Officine Galileo is leading a team with Dasa and Tecnospazio, under ESA contract, for the definition of a facility for the search of extinct life on Mars through the detection of indicators of life. The system, to be embarked on a Mars lander, is based on a drill to take rock samples underneath the oxidised soil layer, on a sample preparation and distribution system devoted to condition and bring the sample to a set of analytical instruments to carry out in-situ chemical and mineralogical investigations. The facility benefits of the presence of optical microscope, gas chromatograph, several spectrometers (Raman, Mass, Mossbauer, APX-Ray), and further instruments. In the frame of planetology, Officine Galileo is collaborating with several Principal Investigators to the definition of a set of instruments to be integrated on the Mars 2003 Lander (a NASA-ASI cooperation). A drill (by Tecnospazio), with the main task to collect Mars soil samples for the subsequent storage and return to Earth, will have the capability to perform several soil analyses, e.g. temperature and near infrared reflectivity spectra down to 50 cm depth, surface thermal and electrical conductivity, sounding of electromagnetic properties down to a few hundreds meter, radioactivity. Moreover a kit of instruments for in-situ soil samples analyses if foreseen; it is based on a dust analyser, an IR spectrometer, a thermofluorescence sensor, and a radioactivity analyser. The attention to the Red Planet is growing, in parallel with the findings of present and planned missions. In the following years the technology of Officine Galileo will carry a strong contribution to the science of Mars.

Isotopic studies in returned lunar samples

NASA Technical Reports Server (NTRS)

Alexander, E. C., Jr.

1971-01-01

Analysis of lunar soil samples returned by Apollo 11 and 12 flights are discussed. Isotopic studies of the rare gases from Apollo 11 flight lunar samples are presented. The lunar soil analyses indicated the following: (1) high concentrations of solar wind rare gases, (2) isotopic match between solar wind gases and gas components in gas-rich meteorites, and (3) rare gases attributable to spallation reactions induced in heavier nuclides by cosmic ray particles.

Polonium-210 analyses of vegetables, cured and uncured tobacco, and associated soils.

PubMed

Berger, K C; Erhardt, W H; Francis, C W

1965-12-24

Analysis of the edible portion of vegetables and samples of green leaf tobacco failed to show polonium-210. The cured samples of leaf tobacco and the soils that were analyzed all contained small quantities of the element. Muck soils contained three times as much Po(210) as did mineral soils. Solutions used commonly to extract "available" forms of many mineral elements failed to extract a detectable amount of Po(2l0). Indications are that Po(210) or its radioactive precursors are not taken up from the soil directly by plant roots but rather by sorption in dead, moist plant materials at the atmosphere-plant interface.

Element concentrations in surface soils of the Coconino Plateau, Grand Canyon region, Coconino County, Arizona

USGS Publications Warehouse

Van Gosen, Bradley S.

2016-09-15

This report provides the geochemical analyses of a large set of background soils collected from the surface of the Coconino Plateau in northern Arizona. More than 700 soil samples were collected at 46 widespread areas, sampled from sites that appear unaffected by mineralization and (or) anthropogenic contamination. The soils were analyzed for 47 elements, thereby providing data on metal concentrations in soils representative of the plateau. These background concentrations can be used, for instance, for comparison to metal concentrations found in soils potentially affected by natural and anthropogenic influences on the Coconino Plateau in the Grand Canyon region of Arizona.The soil sampling survey revealed low concentrations for the metals most commonly of environmental concern, such as arsenic, cobalt, chromium, copper, mercury, manganese, molybdenum, lead, uranium, vanadium, and zinc. For example, the median concentrations of the metals in soils of the Coconino Plateau were found to be comparable to the mean values previously reported for soils of the western United States.

Use of mass spectrometry coupled with a solids insertion probe to prescreen soil samples for environmental samples

DOE Office of Scientific and Technical Information (OSTI.GOV)

Check, C.E.; Bach, S.B.H.

1995-12-31

The contamination of air, water, and soils by a myriad of sources generates a large sample Currently, sample volume for hazardous constituent analyses is approximately half a million samples per year. The total analytical costs associated with this are astronomical. The analysis of these samples is vital in terms of assessing the types of contamination present and to what degree a site has been contaminated. The results of these analyses are very important for making an informed, knowledgeable decision as to the need for remediation and what type of remediation processes should be initiated based on site suitability vs non-actionmore » for the various sample sites. With an ever growing environmental consciousness in today`s society, the assessment and subsequent remediation of a site needs to be accomplished promptly despite the time constraints traditional methods place on such actions. In order to facilitate a rapid assessment, it is desirable to utilize instrumentation and equipment which afford the most information about a site allowing for optimization in environmental assessment while maintaining a realistic time schedule for the resulting remediation process. Because there are various types of environmental samples that can be taken at a site, different combinations of instrumentation and methods are required for assessing the level and type of contamination present whether it is in air, water, or soils. This study is limited to analyzing soil-like media that would normally fall under EPA Method 8270 which is used to analyze solid waste matrices, soils, and groundwater for semi-volatile organic compounds.« less

[Evaluation and source analysis of the mercury pollution in soils and vegetables around a large-scale zinc smelting plant].

PubMed

Liu, Fang; Wang, Shu-Xiao; Wu, Qing-Ru; Lin, Hai

2013-02-01

The farming soil and vegetable samples around a large-scale zinc smelter were collected for mercury content analyses, and the single pollution index method with relevant regulations was used to evaluate the pollution status of sampled soils and vegetables. The results indicated that the surface soil and vegetables were polluted with mercury to different extent. Of the soil samples, 78% exceeded the national standard. The mercury concentration in the most severely contaminated area was 29 times higher than the background concentration, reaching the severe pollution degree. The mercury concentration in all vegetable samples exceeded the standard of non-pollution vegetables. Mercury concentration, in the most severely polluted vegetables were 64.5 times of the standard, and averagely the mercury concentration in the vegetable samples was 25.4 times of the standard. For 85% of the vegetable samples, the mercury concentration, of leaves were significantly higher than that of roots, which implies that the mercury in leaves mainly came from the atmosphere. The mercury concentrations in vegetable roots were significantly correlated with that in soils, indicating the mercury in roots was mainly from soil. The mercury emissions from the zinc smelter have obvious impacts on the surrounding soils and vegetables. Key words:zinc smelting; mercury pollution; soil; vegetable; mercury content

Fractionation of metals by sequential extraction procedures (BCR and Tessier) in soil exposed to fire of wide temperature range

NASA Astrophysics Data System (ADS)

Fajkovic, Hana; Rončević, Sanda; Nemet, Ivan; Prohić, Esad; Leontić-Vazdar, Dana

2017-04-01

Forest fire presents serious problem, especially in Mediterranean Region. Effects of fire are numerous, from climate change and deforestation to loss of soil organic matter and changes in soil properties. One of the effects, not well documented, is possible redistribution and/or remobilisation of pollutants previously deposited in the soil, due to the new physical and chemical soil properties and changes in equilibrium conditions. For understanding and predicting possible redistribution and/or remobilisation of potential pollutants from soil, affected by fire different in temperature, several laboratory investigations were carried out. To evaluate the influence of organic matter on soil under fire, three soil samples were analysed and compared: (a) the one with added coniferous organic matter; (b) deciduous organic matter (b) and (c) soil without additional organic matter. Type of organic matter is closely related to pH of soil, as pH is influencing the mobility of some pollutants, e.g. metals. For that reason pH was also measured through all experimental steps. Each of mentioned soil samples (a, b and c) were heated at 1+3 different temperatures (25°C, 200°C, 500°C and 850°C). After heating, whereby fire effect on soil was simulated, samples were analysed by BCR protocol with the addition of a first step of sequential extraction procedure by Tessier and analysis of residual by aqua regia. Element fractionation of heavy metals by this procedure was used to determine the amounts of selected elements (Al, Cd, Cr, Co, Cu, Fe, Mn, Ni, Pb and Zn). Selected metal concentrations were determined using inductively coupled plasma atomic emission spectrometer. Further on, loss of organic matter was calculated after each heating procedure as well as the mineral composition. The mineral composition was determined using an X-ray diffraction. From obtained results, it can be concluded that temperature has an influence on concentration of elements in specific step of sequential extraction procedures. The first step of Tessier and BCR extraction of samples heated at 250°C and 500°C showed increasing trend of elemental concentrations. Results of these steps are especially important since they indicate mobile fraction of the elements (exchangeable, water- and acid-soluble fraction), which can easily affect the environment. Extraction procedures of samples combusted at 850°C showed that decrease in measured elemental content occurred. Some correlation is also noticed between type of organic matter, pH and concentration of analysed elements.

Estimating Children’s Soil/Dust Ingestion Rates through Retrospective Analyses of Blood Lead Biomonitoring from the Bunker Hill Superfund Site in Idaho

EPA Science Inventory

Background: Soil/dust ingestion rates are important variables in assessing children’s health risks in contaminated environments. Current estimates are based largely on soil tracer methodology, which is limited by analytical uncertainty, small sample size, and short study du...

Application of the soil perturbation index to evaluate created and restored wetlands

Treesearch

Rebecca Smith Maul; Marjorie M. Holland

2000-01-01

Biogeochemical properties of wetlands have recently been investigated to assess recovery of wetland ecosys-tems following human alteration. Analyses of soil samples have shown that the natural regeneration of timber-harvested wetlands exhibits predictable trends for soil organic matter, total organic carbon, total Kjeldahl nitrogen, and total phosphorus. Incorporating...

Speciation of Soil Phosphorus Assessed by XANES Spectroscopy at Different Spatial Scales

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hesterberg, Dean; McNulty, Ian; Thieme, Juergen

Precise management of soil phosphorus (P) to meet competing demands of agriculture and environmental protection can benefit from more comprehensive characterization of P speciation in soils. Our objectives were to provide spatial context for spectroscopic analyses of soil P speciation in relation to molecular-scale species and landscape-scale management of P, and to compare soil P-species diversity from spectroscopic measurements at submicron and millimeter scales. The spatial range of ~26 orders of magnitude between atomic and field scales presents a challenge to upscaling and downscaling information from spectroscopic analyses of soils. Scanning fluorescence X-ray microscopy images of a 50-mm ´ 45-mmmore » area of an organic soil sample showed heterogeneous distributions of P, Al, and Si. Microscale X-ray absorption near edge structure (μ-XANES) spectra collected at the P K-edge from 12 spots on the soil sample exhibited diverse features that indicated variations in highly localized P speciation. Linear combination fitting analysis of the μ-XANES spectra included various proportions of three standards that appeared in fits for most spots and five standards that appeared in fits for one spot each. The fit to a bulk-soil spectrum was dominated by two of the common standards in the μ-XANES fits, and a fit to the sum of m-XANES spectra included four of the standards. Lastly, these results illustrate a gain in P species sensitivity from spatially resolved XANES analysis. Integrating spectroscopic analyses from multiple scales determines soil P species diversity and will ultimately help connect speciation to the chemical reactivity and mobility of P in soils.« less

Speciation of Soil Phosphorus Assessed by XANES Spectroscopy at Different Spatial Scales

DOE PAGES

Hesterberg, Dean; McNulty, Ian; Thieme, Juergen

2017-07-27

Precise management of soil phosphorus (P) to meet competing demands of agriculture and environmental protection can benefit from more comprehensive characterization of P speciation in soils. Our objectives were to provide spatial context for spectroscopic analyses of soil P speciation in relation to molecular-scale species and landscape-scale management of P, and to compare soil P-species diversity from spectroscopic measurements at submicron and millimeter scales. The spatial range of ~26 orders of magnitude between atomic and field scales presents a challenge to upscaling and downscaling information from spectroscopic analyses of soils. Scanning fluorescence X-ray microscopy images of a 50-mm ´ 45-mmmore » area of an organic soil sample showed heterogeneous distributions of P, Al, and Si. Microscale X-ray absorption near edge structure (μ-XANES) spectra collected at the P K-edge from 12 spots on the soil sample exhibited diverse features that indicated variations in highly localized P speciation. Linear combination fitting analysis of the μ-XANES spectra included various proportions of three standards that appeared in fits for most spots and five standards that appeared in fits for one spot each. The fit to a bulk-soil spectrum was dominated by two of the common standards in the μ-XANES fits, and a fit to the sum of m-XANES spectra included four of the standards. Lastly, these results illustrate a gain in P species sensitivity from spatially resolved XANES analysis. Integrating spectroscopic analyses from multiple scales determines soil P species diversity and will ultimately help connect speciation to the chemical reactivity and mobility of P in soils.« less

Determination of $sup 241$Am in soil using an automated nuclear radiation measurement laboratory

DOE Office of Scientific and Technical Information (OSTI.GOV)

Engstrom, D.E.; White, M.G.; Dunaway, P.B.

The recent completion of REECo's Automated Laboratory and associated software systems has provided a significant increase in capability while reducing manpower requirements. The system is designed to perform gamma spectrum analyses on the large numbers of samples required by the current Nevada Applied Ecology Group (NAEG) and Plutonium Distribution Inventory Program (PDIP) soil sampling programs while maintaining sufficient sensitivities as defined by earlier investigations of the same type. The hardware and systems are generally described in this paper, with emphasis being placed on spectrum reduction and the calibration procedures used for soil samples. (auth)

Functional Assays and Metagenomic Analyses Reveals Differences between the Microbial Communities Inhabiting the Soil Horizons of a Norway Spruce Plantation

PubMed Central

Uroz, Stéphane; Ioannidis, Panos; Lengelle, Juliette; Cébron, Aurélie; Morin, Emmanuelle; Buée, Marc; Martin, Francis

2013-01-01

In temperate ecosystems, acidic forest soils are among the most nutrient-poor terrestrial environments. In this context, the long-term differentiation of the forest soils into horizons may impact the assembly and the functions of the soil microbial communities. To gain a more comprehensive understanding of the ecology and functional potentials of these microbial communities, a suite of analyses including comparative metagenomics was applied on independent soil samples from a spruce plantation (Breuil-Chenue, France). The objectives were to assess whether the decreasing nutrient bioavailability and pH variations that naturally occurs between the organic and mineral horizons affects the soil microbial functional biodiversity. The 14 Gbp of pyrosequencing and Illumina sequences generated in this study revealed complex microbial communities dominated by bacteria. Detailed analyses showed that the organic soil horizon was significantly enriched in sequences related to Bacteria, Chordata, Arthropoda and Ascomycota. On the contrary the mineral horizon was significantly enriched in sequences related to Archaea. Our analyses also highlighted that the microbial communities inhabiting the two soil horizons differed significantly in their functional potentials according to functional assays and MG-RAST analyses, suggesting a functional specialisation of these microbial communities. Consistent with this specialisation, our shotgun metagenomic approach revealed a significant increase in the relative abundance of sequences related glycoside hydrolases in the organic horizon compared to the mineral horizon that was significantly enriched in glycoside transferases. This functional stratification according to the soil horizon was also confirmed by a significant correlation between the functional assays performed in this study and the functional metagenomic analyses. Together, our results suggest that the soil stratification and particularly the soil resource availability impact the functional diversity and to a lesser extent the taxonomic diversity of the bacterial communities. PMID:23418476

Mineralogy and chemistry of Ti-bearing lunar soils: Effects on reflectance spectra and remote sensing observations

NASA Astrophysics Data System (ADS)

Coman, Ecaterina O.; Jolliff, Bradley L.; Carpenter, Paul

2018-05-01

This paper presents results of coordinated ultraviolet and visible wavelength reflectance measurements, X-ray diffraction analyses of mineral components, and micro X-ray fluorescence analyses of Ti concentrations of 13 lunar soil samples (<210 μm) that span a range of maturity and TiO2 contents. Results of these analyses are used to determine the effects of soil maturity, TiO2 concentration, and specific mineralogical makeup, especially ilmenite content, on the ultraviolet/visible (UV/VIS) ratio for application to remote sensing observations of the Moon and other airless bodies. We find that measured ilmenite weight percent correlates highly with measured TiO2 concentrations. Thus, the ilmenite content is a good predictor of TiO2 concentration. Ilmenite is the main contributor of TiO2 for soils with greater than about 2 wt.% TiO2, so we take the effects of TiO2 on reflectance spectra to be essentially those of ilmenite. Constraining the data set to eight mature Apollo soils, we find that among the UV/VIS ratios from laboratory-measured spectra, the 321/415 nm ratio shows the best correlation with TiO2 and ilmenite. Moreover, for soils with similar maturity in the submature to mature range, those with higher TiO2 have higher 321/415 UV/VIS ratios. Finally, the correlation between TiO2 content and 321/415 ratio in samples measured in the lab appears weaker than for the same relationship using the Lunar Reconnaissance Orbiter (LRO) Wide Angle Camera (WAC) spectral data for the 321/415 ratio of Apollo ground-truth sites. The correlation between lab-derived 321/415 ratios and TiO2 content for measured samples improves when low-maturity samples are excluded from the dataset, implying that the LROC WAC spectra at 400 m/pix spatial resolution senses mostly mature soil.

Comparison of soil sampling and analytical methods for asbestos at the Sumas Mountain Asbestos Site-Working towards a toolbox for better assessment.

PubMed

Wroble, Julie; Frederick, Timothy; Frame, Alicia; Vallero, Daniel

2017-01-01

Established soil sampling methods for asbestos are inadequate to support risk assessment and risk-based decision making at Superfund sites due to difficulties in detecting asbestos at low concentrations and difficulty in extrapolating soil concentrations to air concentrations. Environmental Protection Agency (EPA)'s Office of Land and Emergency Management (OLEM) currently recommends the rigorous process of Activity Based Sampling (ABS) to characterize site exposures. The purpose of this study was to compare three soil analytical methods and two soil sampling methods to determine whether one method, or combination of methods, would yield more reliable soil asbestos data than other methods. Samples were collected using both traditional discrete ("grab") samples and incremental sampling methodology (ISM). Analyses were conducted using polarized light microscopy (PLM), transmission electron microscopy (TEM) methods or a combination of these two methods. Data show that the fluidized bed asbestos segregator (FBAS) followed by TEM analysis could detect asbestos at locations that were not detected using other analytical methods; however, this method exhibited high relative standard deviations, indicating the results may be more variable than other soil asbestos methods. The comparison of samples collected using ISM versus discrete techniques for asbestos resulted in no clear conclusions regarding preferred sampling method. However, analytical results for metals clearly showed that measured concentrations in ISM samples were less variable than discrete samples.

Comparison of soil sampling and analytical methods for asbestos at the Sumas Mountain Asbestos Site—Working towards a toolbox for better assessment

PubMed Central

2017-01-01

Established soil sampling methods for asbestos are inadequate to support risk assessment and risk-based decision making at Superfund sites due to difficulties in detecting asbestos at low concentrations and difficulty in extrapolating soil concentrations to air concentrations. Environmental Protection Agency (EPA)’s Office of Land and Emergency Management (OLEM) currently recommends the rigorous process of Activity Based Sampling (ABS) to characterize site exposures. The purpose of this study was to compare three soil analytical methods and two soil sampling methods to determine whether one method, or combination of methods, would yield more reliable soil asbestos data than other methods. Samples were collected using both traditional discrete (“grab”) samples and incremental sampling methodology (ISM). Analyses were conducted using polarized light microscopy (PLM), transmission electron microscopy (TEM) methods or a combination of these two methods. Data show that the fluidized bed asbestos segregator (FBAS) followed by TEM analysis could detect asbestos at locations that were not detected using other analytical methods; however, this method exhibited high relative standard deviations, indicating the results may be more variable than other soil asbestos methods. The comparison of samples collected using ISM versus discrete techniques for asbestos resulted in no clear conclusions regarding preferred sampling method. However, analytical results for metals clearly showed that measured concentrations in ISM samples were less variable than discrete samples. PMID:28759607

Diffuse Reflectance Spectroscopy for Total Carbon Analysis of Hawaiian Soils

NASA Astrophysics Data System (ADS)

McDowell, M. L.; Bruland, G. L.; Deenik, J. L.; Grunwald, S.; Uchida, R.

2010-12-01

Accurate assessment of total carbon (Ct) content is important for fertility and nutrient management of soils, as well as for carbon sequestration studies. The non-destructive analysis of soils by diffuse reflectance spectroscopy (DRS) is a potential supplement or alternative to the traditional time-consuming and costly combustion method of Ct analysis, especially in spatial or temporal studies where sample numbers are large. We investigate the use of the visible to near-infrared (VNIR) and mid-infrared (MIR) spectra of soils coupled with chemometric analysis to determine their Ct content. Our specific focus is on Hawaiian soils of agricultural importance. Though this technique has been introduced to the soil community, it has yet to be fully tested and used in practical applications for all soil types, and this is especially true for Hawaii. In short, DRS characterizes and differentiates materials based on the variation of the light reflected by a material at certain wavelengths. This spectrum is dependent on the material’s composition, structure, and physical state. Multivariate chemometric analysis unravels the information in a set of spectra that can help predict a property such as Ct. This study benefits from the remarkably diverse soils of Hawaii. Our sample set includes 216 soil samples from 145 pedons from the main Hawaiian Islands archived at the National Soil Survey Center in Lincoln, NE, along with more than 50 newly-collected samples from Kauai, Oahu, Molokai, and Maui. In total, over 90 series from 10 of the 12 soil orders are represented. The Ct values of these samples range from < 1% - 55%. We anticipate that the diverse nature of our sample set will ensure a model with applicability to a wide variety of soils, both in Hawaii and globally. We have measured the VNIR and MIR spectra of these samples and obtained their Ct values by dry combustion. Our initial analyses are conducted using only samples obtained from the Lincoln archive. In this preliminary case, we use Partial Least Squares (PLS) regression with cross validation to develop a prediction model for soils of unknown carbon content given only their spectral signature. We find R2 values of greater than 0.93 for the MIR spectra and 0.87 for the VNIR spectra, indicating a strong ability to correlate a soil’s spectrum with its Ct content. We build on these encouraging results by continuing chemometric analyses using the full data set, different data subsets, separate model calibration and validation groups, combined VNIR and MIR spectra, and exploring different data pretreatment options and variations to the PLS parameters.

Collaborative, Nondestructive Analysis of Contaminated Soil

DOE Office of Scientific and Technical Information (OSTI.GOV)

Knight, K. B.; Dai, Z.; Davidson, L.

This report summarizes a joint nondestructive analysis exercise that LLNL, LANL, and COMENA discussed through a collaborative meeting in July 2017. This work was performed as one part of a collaboration with Algeria under Action Sheet 7: “Technical Cooperation and Assistance in Nuclear Forensics”. The primary intent of this exercise was for US and Algerian participants to jointly share results of nondestructive analyses (NDA) of a contaminated soil sample provided by the Algerians and to discuss key observations and analytical approaches. While the two samples were analyzed blind at LLNL and LANL, the soil samples were revealed after the exercisemore » to have a common origin, and to have originated as an IAEA soil sample (IAEA-326, Bojanowski et al., 2001) provided to COMENA as part of a previous exercise. Comparative analysis revealed common findings between the laboratories, and also emphasized the need for standardized operating procedures to improve inter-comparability and confidence in conclusions. Recommended handling practices in the presence of sample heterogeneities were also discussed. This exercise provided an opportunity to demonstrate nuclear forensics analytical capabilities at COMENA, LANL, and LLNL, and identified areas that could benefit from future technical exchanges. Plans were made for a follow-on joint exercise in 2018, involving destructive analyses of the CUP-2 uranium ore concentrate standard.« less

Rangeland degradation in savannas of South Africa: spatial patterns of soil and vegetation

NASA Astrophysics Data System (ADS)

Sandhage-Hofmann, Alexandra; Löffler, Jörg; du Preez, Chris; Kotzé, Elmarie; Weijers, Stef; Wundram, Dirk; Zacharias, Maximilan; Amelung, Wulf

2017-04-01

Extensive bush encroachment by Acacia mellifera and associated woody species at semi-arid and arid sites are the most notable forms of rangeland degradation in savannas of South Africa. Concerns are growing over the threat of suppression and loss of nutritious perennial grass species. Grazing and different rangeland management systems (communal and freehold) are considered to be of major importance for degradation, but the process of encroachment is not restricted to communal land. A vegetation change is mostly accompanied by changes in soil properties, where soils in savanna systems can profit from woody species due to litter fall, root distribution, shadow and animal resting time. Savannas are very heterogeneous systems with high spatial variation of patches with wood, herbaceous species and bare ground. We hypothesized that the spatial patterns of soil properties in South Africás rangelands are controlled by present or past vegetation, modulated by the tenure systems with higher rangeland degradation in communal areas. To test this, we sampled soils at communal and commercial land in the Kuruman area of South Africa with the following design: three farms per tenure system, 6 randomly chosen plots (100x100m) per farm, and 25 soil samples (0-10 cm) per plot, each in a 5x5m sampling area. At every sampling point, information of overlying vegetation was recorded (species or bare soil, canopy size, height). For each sampling area, if present, trees/ shrubs were sampled and their ages estimated through the counting of annual growth rings. For each plot, high resolution UAV aerial photos were taken to evaluate the extent of bush encroachment. Analyses involved main physical and chemical soil parameters and isotopic analyses. The results of a rough aerial image classification (grass, woody species, bare ground) revealed significant differences between the tenure systems with higher coverage of bare ground and shrubs at communal farms, and higher grass cover at commercial farms. The tenure systems had no differences in main texture classes of the soils, but significant differences in the composition of the sand fraction, with higher levels of fine sand and lower levels of coarse sand in communal farms. The chemical soil properties showed a high variability both within and between the farms, with much higher variability within communal than commercial farms. Additionally, concentrations of nitrogen, carbon, calcium and pH were significant higher in communal farms. Isotopic analyses in soils showed significant differences for 15N with higher levels in commercial farms. Different photosynthetic pathways are responsible for differences found in 13C values, with higher levels (-16-18‰) in C4-grassland and lower values (-22-26‰) in soils under Acacia (C3). We found relationships between soil properties and species or bare ground, where differences in texture likely interact with both, vegetation cover and soil properties.

Inter-laboratory variation in the chemical analysis of acidic forest soil reference samples from eastern North America

USGS Publications Warehouse

Ross, Donald S.; Bailiey, Scott W; Briggs, Russell D; Curry, Johanna; Fernandez, Ivan J.; Fredriksen, Guinevere; Goodale, Christine L.; Hazlett, Paul W.; Heine, Paul R; Johnson, Chris E.; Larson, John T; Lawrence, Gregory B.; Kolka, Randy K; Ouimet, Rock; Pare, D; Richter, Daniel D.; Shirmer, Charles D; Warby, Richard A.F.

2015-01-01

Long-term forest soil monitoring and research often requires a comparison of laboratory data generated at different times and in different laboratories. Quantifying the uncertainty associated with these analyses is necessary to assess temporal changes in soil properties. Forest soil chemical properties, and methods to measure these properties, often differ from agronomic and horticultural soils. Soil proficiency programs do not generally include forest soil samples that are highly acidic, high in extractable Al, low in extractable Ca and often high in carbon. To determine the uncertainty associated with specific analytical methods for forest soils, we collected and distributed samples from two soil horizons (Oa and Bs) to 15 laboratories in the eastern United States and Canada. Soil properties measured included total organic carbon and nitrogen, pH and exchangeable cations. Overall, results were consistent despite some differences in methodology. We calculated the median absolute deviation (MAD) for each measurement and considered the acceptable range to be the median 6 2.5 3 MAD. Variability among laboratories was usually as low as the typical variability within a laboratory. A few areas of concern include a lack of consistency in the measurement and expression of results on a dry weight basis, relatively high variability in the C/N ratio in the Bs horizon, challenges associated with determining exchangeable cations at concentrations near the lower reporting range of some laboratories and the operationally defined nature of aluminum extractability. Recommendations include a continuation of reference forest soil exchange programs to quantify the uncertainty associated with these analyses in conjunction with ongoing efforts to review and standardize laboratory methods.

Heavy metals in soils and crops in Southeast Asia. 1. Peninsular Malaysia.

PubMed

Zarcinas, Bernhard A; Ishak, Che Fauziah; McLaughlin, Mike J; Cozens, Gill

2004-12-01

In a reconnaisance soil geochemical and plant survey undertaken to study the heavy metal uptake by major food crops in Malaysia, 241 soils were analysed for cation exchange capacity (CEC), organic carbon (C), pH, electrical conductivity (EC) and available phosphorus (P) using appropriate procedures. These soils were also analysed for arsenic (As), cadmium (Cd), cobalt (Co), chromium (Cr), copper (Cu), mercury (Hg), nickel (Ni), lead (Pb) and zinc (Zn) using aqua regia digestion, together with 180 plant samples using nitric acid digestion. Regression analysis between the edible plant part and aqua regia soluble soil As, Cd, Cr, Cu, Hg, Ni, Pb and Zn concentrations sampled throughout Peninsular Malaysia, indicated a positive relationship for Pb in all the plants sampled in the survey (R2 = 0.195, p < 0.001), for Ni in corn (R2 = 0.649, p < 0.005), for Cu in chili (R2 = 0.344, p < 0.010) and for Zn in chili (R2 = 0.501, p < 0.001). Principal component analysis of the soil data suggested that concentrations of Co, Ni, Pb and Zn were strongly correlated with concentrations of Al and Fe, which is suggestive of evidence of background variations due to changes in soil mineralogy. Thus the evidence for widespread contamination of soils by these elements through agricultural activities is not strong. Chromium was correlated with soil pH and EC, Na, S, and Ca while Hg was not correlated with any of these components, suggesting diffuse pollution by aerial deposition. However As, Cd, Cu were strongly associated with organic matter and available and aqua regia soluble soil P, which we attribute to inputs in agricultural fertilisers and soil organic amendments (e.g. manures, composts).

Taxonomic and functional profiles of soil samples from Atlantic forest and Caatinga biomes in northeastern Brazil

PubMed Central

Pacchioni, Ralfo G; Carvalho, Fabíola M; Thompson, Claudia E; Faustino, André L F; Nicolini, Fernanda; Pereira, Tatiana S; Silva, Rita C B; Cantão, Mauricio E; Gerber, Alexandra; Vasconcelos, Ana T R; Agnez-Lima, Lucymara F

2014-01-01

Although microorganisms play crucial roles in ecosystems, metagenomic analyses of soil samples are quite scarce, especially in the Southern Hemisphere. In this work, the microbial diversity of soil samples from an Atlantic Forest and Caatinga was analyzed using a metagenomic approach. Proteobacteria and Actinobacteria were the dominant phyla in both samples. Among which, a significant proportion of stress-resistant bacteria associated to organic matter degradation was found. Sequences related to metabolism of amino acids, nitrogen, and DNA and stress resistance were more frequent in Caatinga soil, while the forest sample showed the highest occurrence of hits annotated in phosphorous metabolism, defense mechanisms, and aromatic compound degradation subsystems. The principal component analysis (PCA) showed that our samples are close to the desert metagenomes in relation to taxonomy, but are more similar to rhizosphere microbiota in relation to the functional profiles. The data indicate that soil characteristics affect the taxonomic and functional distribution; these characteristics include low nutrient content, high drainage (both are sandy soils), vegetation, and exposure to stress. In both samples, a rapid turnover of organic matter with low greenhouse gas emission was suggested by the functional profiles obtained, reinforcing the importance of preserving natural areas. PMID:24706600

Microbial soil community analyses for forensic science: Application to a blind test.

PubMed

Demanèche, Sandrine; Schauser, Leif; Dawson, Lorna; Franqueville, Laure; Simonet, Pascal

2017-01-01

Soil complexity, heterogeneity and transferability make it valuable in forensic investigations to help obtain clues as to the origin of an unknown sample, or to compare samples from a suspect or object with samples collected at a crime scene. In a few countries, soil analysis is used in matters from site verification to estimates of time after death. However, up to date the application or use of soil information in criminal investigations has been limited. In particular, comparing bacterial communities in soil samples could be a useful tool for forensic science. To evaluate the relevance of this approach, a blind test was performed to determine the origin of two questioned samples (one from the mock crime scene and the other from a 50:50 mixture of the crime scene and the alibi site) compared to three control samples (soil samples from the crime scene, from a context site 25m away from the crime scene and from the alibi site which was the suspect's home). Two biological methods were used, Ribosomal Intergenic Spacer Analysis (RISA), and 16S rRNA gene sequencing with Illumina Miseq, to evaluate the discriminating power of soil bacterial communities. Both techniques discriminated well between soils from a single source, but a combination of both techniques was necessary to show that the origin was a mixture of soils. This study illustrates the potential of applying microbial ecology methodologies in soil as an evaluative forensic tool. Copyright © 2016 Elsevier Ireland Ltd. All rights reserved.

What is the story that soil tells us? Environmental and anthropogenic change

NASA Astrophysics Data System (ADS)

Shanskiy, Merrit; Kriiska, Aivar; Oras, Ester

2015-04-01

The archaeological studies have shown the evidence of human impact on soils functioning. On the other hand, the changed conditions of normal soil functioning will influence the human settlement in specific area. This study is part of a wider archaeological project on the environmental studies of the Kohtla Iron Age sacrificial site. To obtain a data about soil cover around historical finding some 1500 years ago, special sampling and research were carried out at the study site located in Kohtla Vanaküla, northeastern Estonia where a valuable collection of metal weapons and tools was discovered. The aim of current study was to analyze the site-specific soils to find out the connections between soil records and human mediated historical land degradation. Also, the site specific conditions were studied in order to understand its impact on archaeological artefacts and their preservation conditions. For the current investigation the soil sampling was carried out in July, 2014. The soils were described based on 20 soil pits. The site-specific soil morphological description was finalized and chemical analyses were performed at the laboratory of Soil Science and Agrochemistry, Estonian University of Life Science. Soil was air dried and passed through a 2- mm sieve. The chemical elements (P, K, Ca, Mg, Fe) were analyzed by using Mehlich 3 extraction by MP-AES analytical performance. Soil pH was measured from the soil suspension with 1M KCl. Ctot was analysed by dry combustion method in a vario MAX CNS elemental analyser (ELEMENTAR, Germany). Organic C was determined with elemental analyzer. According to World Reference Base for Soil Resources (WRB) classification system (FAO, 1998), the soil in the study area belongs to the soils subgroups of Gley soils on yellowish-grey calcareous till. The study area soil cover has strong anthropogenic influence due to different human activities. First, there are agricultural activities in the area. Although the region is currently exploited as grassland for animal grazing, it is known to have been ploughed in the past, resulting in amelioration of this soil type. Second, a result of surrounding oil-shale mining the status of groundwater has been changed as well.

Fipronil: Toxicity to subterranean termites and dissipation in soils

Treesearch

J. E. Mulrooney; T. L. Wagner; P. D. Gerard

2009-01-01

Fipronil (Termidor 80 WG) was applied to covered and exposed plots at one secondary and four primary USDA Forest Service termiticide test sites in the U.S. Residue analyses and bioassays of soil samples were conducted over 5 y.

Methods of Soil Resampling to Monitor Changes in the Chemical Concentrations of Forest Soils.

PubMed

Lawrence, Gregory B; Fernandez, Ivan J; Hazlett, Paul W; Bailey, Scott W; Ross, Donald S; Villars, Thomas R; Quintana, Angelica; Ouimet, Rock; McHale, Michael R; Johnson, Chris E; Briggs, Russell D; Colter, Robert A; Siemion, Jason; Bartlett, Olivia L; Vargas, Olga; Antidormi, Michael R; Koppers, Mary M

2016-11-25

Recent soils research has shown that important chemical soil characteristics can change in less than a decade, often the result of broad environmental changes. Repeated sampling to monitor these changes in forest soils is a relatively new practice that is not well documented in the literature and has only recently been broadly embraced by the scientific community. The objective of this protocol is therefore to synthesize the latest information on methods of soil resampling in a format that can be used to design and implement a soil monitoring program. Successful monitoring of forest soils requires that a study unit be defined within an area of forested land that can be characterized with replicate sampling locations. A resampling interval of 5 years is recommended, but if monitoring is done to evaluate a specific environmental driver, the rate of change expected in that driver should be taken into consideration. Here, we show that the sampling of the profile can be done by horizon where boundaries can be clearly identified and horizons are sufficiently thick to remove soil without contamination from horizons above or below. Otherwise, sampling can be done by depth interval. Archiving of sample for future reanalysis is a key step in avoiding analytical bias and providing the opportunity for additional analyses as new questions arise.

Methods of Soil Resampling to Monitor Changes in the Chemical Concentrations of Forest Soils

PubMed Central

Lawrence, Gregory B.; Fernandez, Ivan J.; Hazlett, Paul W.; Bailey, Scott W.; Ross, Donald S.; Villars, Thomas R.; Quintana, Angelica; Ouimet, Rock; McHale, Michael R.; Johnson, Chris E.; Briggs, Russell D.; Colter, Robert A.; Siemion, Jason; Bartlett, Olivia L.; Vargas, Olga; Antidormi, Michael R.; Koppers, Mary M.

2016-01-01

Recent soils research has shown that important chemical soil characteristics can change in less than a decade, often the result of broad environmental changes. Repeated sampling to monitor these changes in forest soils is a relatively new practice that is not well documented in the literature and has only recently been broadly embraced by the scientific community. The objective of this protocol is therefore to synthesize the latest information on methods of soil resampling in a format that can be used to design and implement a soil monitoring program. Successful monitoring of forest soils requires that a study unit be defined within an area of forested land that can be characterized with replicate sampling locations. A resampling interval of 5 years is recommended, but if monitoring is done to evaluate a specific environmental driver, the rate of change expected in that driver should be taken into consideration. Here, we show that the sampling of the profile can be done by horizon where boundaries can be clearly identified and horizons are sufficiently thick to remove soil without contamination from horizons above or below. Otherwise, sampling can be done by depth interval. Archiving of sample for future reanalysis is a key step in avoiding analytical bias and providing the opportunity for additional analyses as new questions arise. PMID:27911419

Methods of soil resampling to monitor changes in the chemical concentrations of forest soils

USGS Publications Warehouse

Lawrence, Gregory B.; Fernandez, Ivan J.; Hazlett, Paul W.; Bailey, Scott W.; Ross, Donald S.; Villars, Thomas R.; Quintana, Angelica; Ouimet, Rock; McHale, Michael; Johnson, Chris E.; Briggs, Russell D.; Colter, Robert A.; Siemion, Jason; Bartlett, Olivia L.; Vargas, Olga; Antidormi, Michael; Koppers, Mary Margaret

2016-01-01

Recent soils research has shown that important chemical soil characteristics can change in less than a decade, often the result of broad environmental changes. Repeated sampling to monitor these changes in forest soils is a relatively new practice that is not well documented in the literature and has only recently been broadly embraced by the scientific community. The objective of this protocol is therefore to synthesize the latest information on methods of soil resampling in a format that can be used to design and implement a soil monitoring program. Successful monitoring of forest soils requires that a study unit be defined within an area of forested land that can be characterized with replicate sampling locations. A resampling interval of 5 years is recommended, but if monitoring is done to evaluate a specific environmental driver, the rate of change expected in that driver should be taken into consideration. Here, we show that the sampling of the profile can be done by horizon where boundaries can be clearly identified and horizons are sufficiently thick to remove soil without contamination from horizons above or below. Otherwise, sampling can be done by depth interval. Archiving of sample for future reanalysis is a key step in avoiding analytical bias and providing the opportunity for additional analyses as new questions arise.

Geochemical and radiological characterization of soils from former radium processing sites

USGS Publications Warehouse

Landa, E.R.

1984-01-01

Soil samples were collected from former radium processing sites in Denver, CO, and East Orange, NJ. Particle-size separations and radiochemical analyses of selected samples showed that while the greatest contents of both 226Ra and U were generally found in the finest (< 45 ??m) fraction, the pattern was not always of progressive increase in radionuclide content with decreasing particle size. Leaching tests on these samples showed a large portion of the 225Ra and U to be soluble in dilute hydrochloric acid. Radon-emanation coefficients measured for bulk samples of contaminated soil were about 20%. Recovery of residual uranium and vanadium, as an adjunct to any remedial action program, appears unlikely due to economic considerations.

Combined radiochemical procedure for determination of plutonium, americium and strontium-90 in the soil samples from SNTS

NASA Astrophysics Data System (ADS)

Kazachevskii, I. V.; Lukashenko, S. N.; Chumikov, G. N.; Chakrova, E. T.; Smirin, L. N.; Solodukhin, V. P.; Khayekber, S.; Berdinova, N. M.; Ryazanova, L. A.; Bannyh, V. I.; Muratova, V. M.

1999-01-01

The results of combined radiochemical procedure for the determination of plutonium, americium and90Sr (via measurement of90Y) in the soil samples from SNTS are presented. The processes of co-precipitation of these nuclides with calcium fluoride in the strong acid solutions have been investigated. The conditions for simultaneous separation of americium and yttrium using extraction chromatography have been studied. It follows from analyses of real soil samples that the procedure developed provides the chemical recovery of plutonium and yttrium in the range of 50-95% and 60-95%, respectively. The execution of the procedure requires 3.5 working days including a sample decomposition study.

Ecological guild and enzyme activities of rhizosphere soil microbial communities associated with Bt-maize cultivation under field conditions in North West Province of South Africa.

PubMed

van Wyk, Deidré A B; Adeleke, Rasheed; Rhode, Owen H J; Bezuidenhout, Carlos C; Mienie, Charlotte

2017-09-01

Insecticidal proteins expressed by genetically modified Bt maize may alter the enzymatic and microbial communities associated with rhizosphere soil. This study investigated the structure and enzymatic activity of rhizosphere soil microbial communities associated with field grown Bt and non-Bt maize. Rhizosphere soil samples were collected from Bt and non-Bt fields under dryland and irrigated conditions. Samples were subjected to chemical tests, enzyme analyses, and next generation sequencing. Results showed that nitrate and phosphorus concentrations were significantly higher in non-Bt maize dryland soils, while organic carbon was significantly higher in non-Bt maize irrigated field soil. Acid phosphatase and β-glucosidase activities were significantly reduced in soils under Bt maize cultivation. The species diversity differed between fields and Bt and non-Bt maize soils. Results revealed that Actinobacteria, Proteobacteria, and Acidobacteria were the dominant phyla present in these soils. Redundancy analyses indicated that some chemical properties and enzyme activities could explain differences in bacterial community structures. Variances existed in microbial community structures between Bt and non-Bt maize fields. There were also differences between the chemical and biochemical properties of rhizosphere soils under Bt and non-Bt maize cultivation. These differences could be related to agricultural practices and cultivar type. © 2017 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Assessing NIR & MIR Spectral Analysis as a Method for Soil C Estimation Across a Network of Sampling Sites

NASA Astrophysics Data System (ADS)

Spencer, S.; Ogle, S.; Borch, T.; Rock, B.

2008-12-01

Monitoring soil C stocks is critical to assess the impact of future climate and land use change on carbon sinks and sources in agricultural lands. A benchmark network for soil carbon monitoring of stock changes is being designed for US agricultural lands with 3000-5000 sites anticipated and re-sampling on a 5- to10-year basis. Approximately 1000 sites would be sampled per year producing around 15,000 soil samples to be processed for total, organic, and inorganic carbon, as well as bulk density and nitrogen. Laboratory processing of soil samples is cost and time intensive, therefore we are testing the efficacy of using near-infrared (NIR) and mid-infrared (MIR) spectral methods for estimating soil carbon. As part of an initial implementation of national soil carbon monitoring, we collected over 1800 soil samples from 45 cropland sites in the mid-continental region of the U.S. Samples were processed using standard laboratory methods to determine the variables above. Carbon and nitrogen were determined by dry combustion and inorganic carbon was estimated with an acid-pressure test. 600 samples are being scanned using a bench- top NIR reflectance spectrometer (30 g of 2 mm oven-dried soil and 30 g of 8 mm air-dried soil) and 500 samples using a MIR Fourier-Transform Infrared Spectrometer (FTIR) with a DRIFT reflectance accessory (0.2 g oven-dried ground soil). Lab-measured carbon will be compared to spectrally-estimated carbon contents using Partial Least Squares (PLS) multivariate statistical approach. PLS attempts to develop a soil C predictive model that can then be used to estimate C in soil samples not lab-processed. The spectral analysis of soil samples either whole or partially processed can potentially save both funding resources and time to process samples. This is particularly relevant for the implementation of a national monitoring network for soil carbon. This poster will discuss our methods, initial results and potential for using NIR and MIR spectral approaches to either replace or augment traditional lab-based carbon analyses of soils.

Determination of As concentration in earthworm coelomic fluid extracts by total-reflection X-ray fluorescence spectrometry

NASA Astrophysics Data System (ADS)

Allegretta, Ignazio; Porfido, Carlo; Panzarino, Onofrio; Fontanella, Maria Chiara; Beone, Gian Maria; Spagnuolo, Matteo; Terzano, Roberto

2017-04-01

Earthworms are often used as sentinel organisms to study As bioavailability in polluted soils. Arsenic in earthworms is mainly sequestrated in the coelomic fluids whose As content can therefore be used to asses As bioavalability. In this work, a method for determining As concentration in coelomic fluid extracts using total-reflection X-ray fluorescence spectrometry (TXRF) is presented. For this purpose coelomic fluid extracts from earthworms living in three polluted soils and one non-polluted (control) soil have been collected and analysed. A very simple sample preparation was implemented, consisting of a dilution of the extracts with polyvinyl alcohol (PVA) using a 1:8 ratio and dropwise deposition of the sample on the reflector. A detection limit of 0.2 μg/l and quantification limit of 0.6 μg/l was obtained in the diluted samples, corresponding to 2 μg/l and 6 μg/l in the coelomic fluid extracts, respectively. This allowed to quantify As concentration in coelomic fluids extracted from earthworms living in soils polluted with As at concentrations higher than 20 mg/kg (considered as a pollution threshold for agricultural soils). The TXRF method has been validated by comparison with As concentrations in standards and by analysing the same samples by ICP-MS, after acid digestion of the sample. The low limit of detection, the proven reliability of the method and the little sample preparation make TXRF a suitable, cost-efficient and "green" technique for the analysis of As in earthworm coelomic fluid extracts for bioavailability studies.

Genomic and metagenomic analysis of microbes in a soil environment affected by the 2011 Great East Japan Earthquake tsunami.

PubMed

Hiraoka, Satoshi; Machiyama, Asako; Ijichi, Minoru; Inoue, Kentaro; Oshima, Kenshiro; Hattori, Masahira; Yoshizawa, Susumu; Kogure, Kazuhiro; Iwasaki, Wataru

2016-01-14

The Great East Japan Earthquake of 2011 triggered large tsunami waves, which flooded broad areas of land along the Pacific coast of eastern Japan and changed the soil environment drastically. However, the microbial characteristics of tsunami-affected soil at the genomic level remain largely unknown. In this study, we isolated microbes from a soil sample using general low-nutrient and seawater-based media to investigate microbial characteristics in tsunami-affected soil. As expected, a greater proportion of strains isolated from the tsunami-affected soil than the unaffected soil grew in the seawater-based medium. Cultivable strains in both the general low-nutrient and seawater-based media were distributed in the genus Arthrobacter. Most importantly, whole-genome sequencing of four of the isolated Arthrobacter strains revealed independent losses of siderophore-synthesis genes from their genomes. Siderophores are low-molecular-weight, iron-chelating compounds that are secreted for iron uptake; thus, the loss of siderophore-synthesis genes indicates that these strains have adapted to environments with high-iron concentrations. Indeed, chemical analysis confirmed the investigated soil samples to be rich in iron, and culture experiments confirmed weak cultivability of some of these strains in iron-limited media. Furthermore, metagenomic analyses demonstrated over-representation of denitrification-related genes in the tsunami-affected soil sample, as well as the presence of pathogenic and marine-living genera and genes related to salt-tolerance. Collectively, the present results would provide an example of microbial characteristics of soil disturbed by the tsunami, which may give an insight into microbial adaptation to drastic environmental changes. Further analyses on microbial ecology after a tsunami are envisioned to develop a deeper understanding of the recovery processes of terrestrial microbial ecosystems.

Radium-228 as an indicator of thorium-232 presence in a soil in Pernambuco, Brazil.

PubMed

Santos Júnior, J A; Amaral, R S; Silva, C M; Menezes, R S C; Bezerra, J D

2009-06-01

Radiometric measurements were taken in a small area of Pernambuco, Brazil, with the objective of monitoring the radium of the soil. For this, 78 soil samples were collected. The gamma analyses of the samples were carried out using HPGe. The values obtained for the (226)Ra varied from 14 to 367 Bqkg(-1) and for the (228)Ra from 73 to 429 Bqkg(-1). The ratio (228)Ra/(226)Ra varied from 1.0 to 7.0. Therefore, it is an indicator of an additional radioactivity source in this soil, maybe (232)Th, which will be further investigated in future studies.

Development of a method for detection and quantification of B. brongniartii and B. bassiana in soil

NASA Astrophysics Data System (ADS)

Canfora, L.; Malusà, E.; Tkaczuk, C.; Tartanus, M.; Łabanowska, B. H.; Pinzari, F.

2016-03-01

A culture independent method based on qPCR was developed for the detection and quantification of two fungal inoculants in soil. The aim was to adapt a genotyping approach based on SSR (Simple Sequence Repeat) marker to a discriminating tracing of two different species of bioinoculants in soil, after their in-field release. Two entomopathogenic fungi, Beauveria bassiana and B. brongniartii, were traced and quantified in soil samples obtained from field trials. These two fungal species were used as biological agents in Poland to control Melolontha melolontha (European cockchafer), whose larvae live in soil menacing horticultural crops. Specificity of SSR markers was verified using controls consisting of: i) soil samples containing fungal spores of B. bassiana and B. brongniartii in known dilutions; ii) the DNA of the fungal microorganisms; iii) soil samples singly inoculated with each fungus species. An initial evaluation of the protocol was performed with analyses of soil DNA and mycelial DNA. Further, the simultaneous detection and quantification of B. bassiana and B. brongniartii in soil was achieved in field samples after application of the bio-inoculants. The protocol can be considered as a relatively low cost solution for the detection, identification and traceability of fungal bio-inoculants in soil.

Development of a method for detection and quantification of B. brongniartii and B. bassiana in soil

PubMed Central

Canfora, L.; Malusà, E.; Tkaczuk, C.; Tartanus, M.; Łabanowska, B.H.; Pinzari, F.

2016-01-01

A culture independent method based on qPCR was developed for the detection and quantification of two fungal inoculants in soil. The aim was to adapt a genotyping approach based on SSR (Simple Sequence Repeat) marker to a discriminating tracing of two different species of bioinoculants in soil, after their in-field release. Two entomopathogenic fungi, Beauveria bassiana and B. brongniartii, were traced and quantified in soil samples obtained from field trials. These two fungal species were used as biological agents in Poland to control Melolontha melolontha (European cockchafer), whose larvae live in soil menacing horticultural crops. Specificity of SSR markers was verified using controls consisting of: i) soil samples containing fungal spores of B. bassiana and B. brongniartii in known dilutions; ii) the DNA of the fungal microorganisms; iii) soil samples singly inoculated with each fungus species. An initial evaluation of the protocol was performed with analyses of soil DNA and mycelial DNA. Further, the simultaneous detection and quantification of B. bassiana and B. brongniartii in soil was achieved in field samples after application of the bio-inoculants. The protocol can be considered as a relatively low cost solution for the detection, identification and traceability of fungal bio-inoculants in soil. PMID:26975931

Influence of uranium on bacterial communities: a comparison of natural uranium-rich soils with controls.

PubMed

Mondani, Laure; Benzerara, Karim; Carrière, Marie; Christen, Richard; Mamindy-Pajany, Yannick; Février, Laureline; Marmier, Nicolas; Achouak, Wafa; Nardoux, Pascal; Berthomieu, Catherine; Chapon, Virginie

2011-01-01

This study investigated the influence of uranium on the indigenous bacterial community structure in natural soils with high uranium content. Radioactive soil samples exhibiting 0.26% - 25.5% U in mass were analyzed and compared with nearby control soils containing trace uranium. EXAFS and XRD analyses of soils revealed the presence of U(VI) and uranium-phosphate mineral phases, identified as sabugalite and meta-autunite. A comparative analysis of bacterial community fingerprints using denaturing gradient gel electrophoresis (DGGE) revealed the presence of a complex population in both control and uranium-rich samples. However, bacterial communities inhabiting uraniferous soils exhibited specific fingerprints that were remarkably stable over time, in contrast to populations from nearby control samples. Representatives of Acidobacteria, Proteobacteria, and seven others phyla were detected in DGGE bands specific to uraniferous samples. In particular, sequences related to iron-reducing bacteria such as Geobacter and Geothrix were identified concomitantly with iron-oxidizing species such as Gallionella and Sideroxydans. All together, our results demonstrate that uranium exerts a permanent high pressure on soil bacterial communities and suggest the existence of a uranium redox cycle mediated by bacteria in the soil.

Influence of Uranium on Bacterial Communities: A Comparison of Natural Uranium-Rich Soils with Controls

PubMed Central

Mondani, Laure; Benzerara, Karim; Carrière, Marie; Christen, Richard; Mamindy-Pajany, Yannick; Février, Laureline; Marmier, Nicolas; Achouak, Wafa; Nardoux, Pascal; Berthomieu, Catherine; Chapon, Virginie

2011-01-01

This study investigated the influence of uranium on the indigenous bacterial community structure in natural soils with high uranium content. Radioactive soil samples exhibiting 0.26% - 25.5% U in mass were analyzed and compared with nearby control soils containing trace uranium. EXAFS and XRD analyses of soils revealed the presence of U(VI) and uranium-phosphate mineral phases, identified as sabugalite and meta-autunite. A comparative analysis of bacterial community fingerprints using denaturing gradient gel electrophoresis (DGGE) revealed the presence of a complex population in both control and uranium-rich samples. However, bacterial communities inhabiting uraniferous soils exhibited specific fingerprints that were remarkably stable over time, in contrast to populations from nearby control samples. Representatives of Acidobacteria, Proteobacteria, and seven others phyla were detected in DGGE bands specific to uraniferous samples. In particular, sequences related to iron-reducing bacteria such as Geobacter and Geothrix were identified concomitantly with iron-oxidizing species such as Gallionella and Sideroxydans. All together, our results demonstrate that uranium exerts a permanent high pressure on soil bacterial communities and suggest the existence of a uranium redox cycle mediated by bacteria in the soil. PMID:21998695

Anthropogenic metal enrichment of snow and soil in north-eastern European Russia.

PubMed

Walker, T R; Young, S D; Crittenden, P D; Zhang, H

2003-01-01

Trace metal composition of winter snowpack, snow-melt filter residues and top-soil samples were determined along three transects through industrial towns in the Usa basin, North-East Russia: Inta, Usinsk and Vorkuta. Snow was analysed for Ag, Al, As, Ba, Cd, Co, Cr, Cu, Mn, Ni, Pb, Sr and Zn using ICP-MS (Ca and K by F-AAS for Vorkuta only), pH and acidity/alkalinity. Filter residues were analysed for: Al, Ba, Ca, Cd, Cu, K, Mg, Mn, Ni, Pb, Sr and Zn using F-AAS and GF-AAS; top-soil samples were analysed for Ba, Cu, Mg, Mn, Na, Ni, Pb, Sr, Zn using F-AAS. Results indicate elevated concentrations of elements associated with alkaline combustion ash around the coal mining towns of Vorkuta and Inta. There is little evidence of deposition around the gas and oil town of Usinsk. Atmospheric deposition in the vicinity of Vorkuta, and to a lesser extent Inta, added significantly to the soil contaminant loading as a result of ash fallout. Acid deposition was associated with pristine areas whereas alkaline combustion ash near to emission sources more than compensated for the acidity caused by SO2.

Soils element history, sampling, analyses, and recommendations. [Plutonium isotopes

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fowler, E.B.; Essington, E.H.

A five year history of the Soils Element of the Nevada Applied Ecology Group (NAEG) is presented. Major projects are reviewed. Emphasis is placed on mound studies and profile studies for the period March 1, 1975, through February 1, 1976. A series of recommendations is made relative to extensions of past efforts of the Soils Element of the NAEG.

Geochemical and mineralogical maps for soils of the conterminous United States

USGS Publications Warehouse

Smith, David B.; Cannon, William F.; Woodruff, Laurel G.; Solano, Federico; Ellefsen, Karl J.

2014-01-01

The U.S. Geological Survey began sampling in 2007 for a low-density (1 site per 1,600 square kilometers, 4,857 sites) geochemical and mineralogical survey of soils in the conterminous United States as part of the North American Soil Geochemical Landscapes Project. The sampling protocol for the national-scale survey included, at each site, a sample from a depth of 0 to 5 centimeters, a composite of the soil A horizon, and a deeper sample from the soil C horizon or, if the top of the C horizon was at a depth greater than 1 meter, a sample from a depth of approximately 80–100 centimeters. The <2-millimeter fraction of each sample was analyzed for a suite of 45 major and trace elements by methods that yield the total or near-total elemental content. The major mineralogical components in the samples from the soil A and C horizons were determined by a quantitative X-ray diffraction method using Rietveld refinement. Sampling in the conterminous United States was completed in 2010, with chemical and mineralogical analyses completed in May 2013. The resulting data set provides an estimate of the abundance and spatial distribution of chemical elements and minerals in soils of the conterminous United States and represents a baseline for soil geochemistry and mineralogy against which future changes may be recognized and quantified. This report releases geochemical and mineralogical maps along with a histogram, boxplot, and empirical cumulative distribution function plot for each element or mineral.

Rock pushing and sampling under rocks on Mars

USGS Publications Warehouse

Moore, H.J.; Liebes, S.; Crouch, D.S.; Clark, L.V.

1978-01-01

Viking Lander 2 acquired samples on Mars from beneath two rocks, where living organisms and organic molecules would be protected from ultraviolet radiation. Selection of rocks to be moved was based on scientific and engineering considerations, including rock size, rock shape, burial depth, and location in a sample field. Rock locations and topography were established using the computerized interactive video-stereophotogrammetric system and plotted on vertical profiles and in plan view. Sampler commands were developed and tested on Earth using a full-size lander and surface mock-up. The use of power by the sampler motor correlates with rock movements, which were by plowing, skidding, and rolling. Provenance of the samples was determined by measurements and interpretation of pictures and positions of the sampler arm. Analytical results demonstrate that the samples were, in fact, from beneath the rocks. Results from the Gas Chromatograph-Mass Spectrometer of the Molecular Analysis experiment and the Gas Exchange instrument of the Biology experiment indicate that more adsorbed(?) water occurs in samples under rocks than in samples exposed to the sun. This is consistent with terrestrial arid environments, where more moisture occurs in near-surface soil un- der rocks than in surrounding soil because the net heat flow is toward the soil beneath the rock and the rock cap inhibits evaporation. Inorganic analyses show that samples of soil from under the rocks have significantly less iron than soil exposed to the sun. The scientific significance of analyses of samples under the rocks is only partly evaluated, but some facts are clear. Detectable quantities of martian organic molecules were not found in the sample from under a rock by the Molecular Analysis experiment. The Biology experiments did not find definitive evidence for Earth-like living organisms in their sample. Significant amounts of adsorbed water may be present in the martian regolith. The response of the soil from under a rock to the aqueous nutrient in the Gas Exchange instrument indicates that adsorbed water and hydrates play an important role in the oxidation potential of the soil. The rock surfaces are strong, because they did not scratch, chip or spall when the sampler pushed them. Fresh surfaces of soil and the undersides of rocks were exposed so that they could be imaged in color. A ledge of soil adhered to one rock that tilted, showing that a crust forms near the surface of Mars. The reason for low amounts of iron in the sampIes from under the rocks is not known at this time.

Ion microprobe mass analysis of lunar samples. Lunar sample program

NASA Technical Reports Server (NTRS)

Anderson, C. A.; Hinthorne, J. R.

1971-01-01

Mass analyses of selected minerals, glasses and soil particles of lunar, meteoritic and terrestrial rocks have been made with the ion microprobe mass analyzer. Major, minor and trace element concentrations have been determined in situ in major and accessory mineral phases in polished rock thin sections. The Pb isotope ratios have been measured in U and Th bearing accessory minerals to yield radiometric age dates and heavy volatile elements have been sought on the surfaces of free particles from Apollo soil samples.

Fertility status of cultivated floodplain soils in the Zambezi Valley, northern Zimbabwe

NASA Astrophysics Data System (ADS)

Chimweta, M.; Nyakudya, I. W.; Jimu, L.

2018-06-01

Flood-recession cropping improves smallholder farmers' household food security. The objective of this study was to determine the fertility status of cultivated Zambezi Valley floodplain soils, in northern Zimbabwe. The study was conducted at three sites, along tributaries of Musengezi River. Soil samples were taken at 0.20 m depth increments to 0.60 m from hydromorphologically stratified fields, during the cropping season. Sampling points were replicated twice in each stratum at points equidistant from river edges. Relative elevations of sampling points were measured using levelling equipment. Soil was analysed using: core method for bulk density, hydrometer method for texture, loss on ignition for soil organic carbon (SOC), Kjeldahl procedure for total nitrogen (N), 0.01 M CaCl2 for pH, and Inductively Coupled Plasma (ICP) for Mehlich 3 extractable elements. Data from soil analyses were subjected to One Way Analysis of Variance and Pearson's correlation analysis. Bulk density ranged from 1.2 to 1.4 g cm-3 and it was negatively related to distance from river; and positively related to elevation at two sites. Highest values for SOC and total N were 2.04% and 0.36% respectively. Soil pH ranged from 7.70 to 8.60. Soil organic carbon and N were positively related to distance from river but negatively related to elevation. Threshold concentrations for deficiency: < 12 ppm for K, and <39 ppm for Mg, were exceeded. Calcium, Na, and micronutrients in most cases exceeded concentrations reported for floodplains. Practices that slow down flowing water and fertilizer microdosing are among possible fertility management options.

Biodiversity of arbuscular mycorrhizal fungi in roots and soils of two salt marshes.

PubMed

Wilde, Petra; Manal, Astrid; Stodden, Marc; Sieverding, Ewald; Hildebrandt, Ulrich; Bothe, Hermann

2009-06-01

The occurrence of arbuscular mycorrhizal fungi (AMF) was assessed by both morphological and molecular criteria in two salt marshes: (i) a NaCl site of the island Terschelling, Atlantic Coast, the Netherlands and (ii) a K(2)CO(3) marsh at Schreyahn, Northern Germany. The overall biodiversity of AMF, based on sequence analysis, was comparably low in roots at both sites. However, the morphological spore analyses from soil samples of both sites exhibited a higher AMF biodiversity. Glomus geosporum was the only fungus of the Glomerales that was detected both as spores in soil samples and in roots of the AMF-colonized salt plants Aster tripolium and Puccinellia sp. at both saline sites and on all sampling dates (one exception). In roots, sequences of Glomus intraradices prevailed, but this fungus could not be identified unambiguously from DNA of soil spores. Likewise, Glomus sp. uncultured, only deposited as sequence in the database, was widely detected by DNA sequencing in root samples. All attempts to obtain the corresponding sequences from spores isolated from soil samples failed consistently. A small sized Archaeospora sp. was detected, either/or by morphological and molecular analyses, in roots or soil spores, in dead AMF spores or orobatid mites. The study noted inconsistencies between morphological characterization and identification by DNA sequencing of the 5.8S rDNA-ITS2 region or part of the 18S rDNA gene. The distribution of AMF unlikely followed the salt gradient at both sites, in contrast to the zone formation of plant species. Zygotes of the alga Vaucheria erythrospora (Xanthophyceae) were retrieved and should not be misidentified with AMF spores.

Results of mineral, chemical, and sulfate isotopic analyses of water, soil, rocks, and soil extracts from the Pariette Draw Watershed, Uinta Basin, Utah

USGS Publications Warehouse

Morrison, Jean M.; Tuttle, Michele L.W.; Fahy, Juli W.

2015-08-06

The goal of this study was to establish a process-based understanding of salt, Se, and B behavior to address whether these contaminants can be better managed, or if uncontrollable natural processes will overwhelm any attempts to bring Pariette Draw into compliance with respect to recently established total maximum daily limits (TMDLs). We collected data to refine our knowledge about the role of rock weathering and soil formation in the transport and storage of salt in the watershed and to show how salt is cycled under irrigated and natural conditions. Our approach was to sample rock, soils, and sediment on irrigated and natural terrain for mineralogical analysis to determine the residence of salt and associated Se and B, classify minerals as primary (related to rock formation) or secondary weathering products, and characterize mineral dissolution kinetics. Mineral and chemical analyses and selective extractions of rocks and soils provide useful information in understanding solute movement and mineral dissolution/ formation. The resulting data are critical in determining residence of salt, Se, and B in weathered rock and soil and understanding the mobility during water-rock-soil interactions. This report summarizes our methods for sample and data collection and tabulates the mineral, chemical, and isotopic data collected.

Geochemical and radiological characterization of soils from former radium processing sites.

PubMed

Landa, E R

1984-02-01

Soil samples were collected from former radium processing sites in Denver, CO, and East Orange, NJ. Particle-size separations and radiochemical analyses of selected samples showed that while the greatest contents of both 226Ra and U were generally found in the finest (less than 45 micron) fraction, the pattern was not always of progressive increase in radionuclide content with decreasing particle size. Leaching tests on these samples showed a large portion of the 226Ra and U to be soluble in dilute hydrochloric acid. Radon-emanation coefficients measured for bulk samples of contaminated soil were about 20%. Recovery of residual uranium and vanadium, as an adjunct to any remedial action program, appears unlikely due to economic considerations.

Soil and leaf litter metaproteomics—a brief guideline from sampling to understanding

PubMed Central

Keiblinger, Katharina M.; Fuchs, Stephan; Zechmeister-Boltenstern, Sophie; Riedel, Katharina

2016-01-01

The increasing application of soil metaproteomics is providing unprecedented, in-depth characterization of the composition and functionality of in situ microbial communities. Despite recent advances in high-resolution mass spectrometry, soil metaproteomics still suffers from a lack of effective and reproducible protein extraction protocols and standardized data analyses. This review discusses the opportunities and limitations of selected techniques in soil-, and leaf litter metaproteomics, and presents a step-by-step guideline on their application, covering sampling, sample preparation, extraction and data evaluation strategies. In addition, we present recent applications of soil metaproteomics and discuss how such approaches, linking phylogenetics and functionality, can help gain deeper insights into terrestrial microbial ecology. Finally, we strongly recommend that to maximize the insights environmental metaproteomics may provide, such methods should be employed within a holistic experimental approach considering relevant aboveground and belowground ecosystem parameters. PMID:27549116

Digital soil classification and elemental mapping using imaging Vis-NIR spectroscopy: How to explicitly quantify stagnic properties of a Luvisol under Norway spruce

NASA Astrophysics Data System (ADS)

Kriegs, Stefanie; Buddenbaum, Henning; Rogge, Derek; Steffens, Markus

2015-04-01

Laboratory imaging Vis-NIR spectroscopy of soil profiles is a novel technique in soil science that can determine quantity and quality of various chemical soil properties with a hitherto unreached spatial resolution in undisturbed soil profiles. We have applied this technique to soil cores in order to get quantitative proof of redoximorphic processes under two different tree species and to proof tree-soil interactions at microscale. Due to the imaging capabilities of Vis-NIR spectroscopy a spatially explicit understanding of soil processes and properties can be achieved. Spatial heterogeneity of the soil profile can be taken into account. We took six 30 cm long rectangular soil columns of adjacent Luvisols derived from quaternary aeolian sediments (Loess) in a forest soil near Freising/Bavaria using stainless steel boxes (100×100×300 mm). Three profiles were sampled under Norway spruce and three under European beech. A hyperspectral camera (VNIR, 400-1000 nm in 160 spectral bands) with spatial resolution of 63×63 µm² per pixel was used for data acquisition. Reference samples were taken at representative spots and analysed for organic carbon (OC) quantity and quality with a CN elemental analyser and for iron oxides (Fe) content using dithionite extraction followed by ICP-OES measurement. We compared two supervised classification algorithms, Spectral Angle Mapper and Maximum Likelihood, using different sets of training areas and spectral libraries. As established in chemometrics we used multivariate analysis such as partial least-squares regression (PLSR) in addition to multivariate adaptive regression splines (MARS) to correlate chemical data with Vis-NIR spectra. As a result elemental mapping of Fe and OC within the soil core at high spatial resolution has been achieved. The regression model was validated by a new set of reference samples for chemical analysis. Digital soil classification easily visualizes soil properties within the soil profiles. By combining both techniques, detailed soil maps, elemental balances and a deeper understanding of soil forming processes at the microscale become feasible for complete soil profiles.

Tracing potential soil contamination in the historical Solvay soda ash plant area, Jaworzno, Southern Poland.

PubMed

Sutkowska, Katarzyna; Teper, Leslaw; Stania, Monika

2015-11-01

This study of soil conditions was carried out on 30 meadow soil (podzol) samples from the vicinity of the soda ash heap in Jaworzno, supplemented by analyses of 18 samples of waste deposited on the heap. In all samples, the total content of macroelements (Ca and Na) and heavy metals (Cd, Cr, Ni, Pb and Zn) as well as pH were analysed. The element concentrations were measured using inductively coupled plasma optical emission spectrometry (ICP-OES). The materials examined were neutral to ultra-alkaline. Total accumulations (mg kg(-1)) of chemical elements in the soil vary from 130.24 to 14076.67 for Ca, 41.40-926.23 for Na, 0.03-3.34 for Cd, 0.94-103.62 for Cr, 0.94-35.89 for Ni, 3.51-76.47 for Pb and 12.05-279.13 for Zn, whereas quantities of the same elements in the waste samples vary from 171705.13 to 360487.94 for Ca, 517.64-3152.82 for Na, 0.2-9.89 for Cd, 1.16-20.40 for Cr, 1.08-9.79 for Ni, 0.1-146.05 for Pb and 10.26-552.35 for Zn. The vertical distribution of the metals was determined in each soil profile. Despite enrichment of heavy metals in the uppermost horizon on the top of the heap, the results lead to the conclusion that the relation of historical production of soda ash in Jaworzno to current contamination of the local soil environment is insignificant.

Taxonomic and functional profiles of soil samples from Atlantic forest and Caatinga biomes in northeastern Brazil.

PubMed

Pacchioni, Ralfo G; Carvalho, Fabíola M; Thompson, Claudia E; Faustino, André L F; Nicolini, Fernanda; Pereira, Tatiana S; Silva, Rita C B; Cantão, Mauricio E; Gerber, Alexandra; Vasconcelos, Ana T R; Agnez-Lima, Lucymara F

2014-06-01

Although microorganisms play crucial roles in ecosystems, metagenomic analyses of soil samples are quite scarce, especially in the Southern Hemisphere. In this work, the microbial diversity of soil samples from an Atlantic Forest and Caatinga was analyzed using a metagenomic approach. Proteobacteria and Actinobacteria were the dominant phyla in both samples. Among which, a significant proportion of stress-resistant bacteria associated to organic matter degradation was found. Sequences related to metabolism of amino acids, nitrogen, and DNA and stress resistance were more frequent in Caatinga soil, while the forest sample showed the highest occurrence of hits annotated in phosphorous metabolism, defense mechanisms, and aromatic compound degradation subsystems. The principal component analysis (PCA) showed that our samples are close to the desert metagenomes in relation to taxonomy, but are more similar to rhizosphere microbiota in relation to the functional profiles. The data indicate that soil characteristics affect the taxonomic and functional distribution; these characteristics include low nutrient content, high drainage (both are sandy soils), vegetation, and exposure to stress. In both samples, a rapid turnover of organic matter with low greenhouse gas emission was suggested by the functional profiles obtained, reinforcing the importance of preserving natural areas. © 2014 The Authors. MicrobiologyOpen published by John Wiley & Sons Ltd.

New approach to measure soil particulate organic matter in intact samples using X-ray computed micro-tomography

NASA Astrophysics Data System (ADS)

Kravchenko, Alexandra; Negassa, Wakene; Guber, Andrey; Schmidt, Sonja

2014-05-01

Particulate soil organic matter (POM) is biologically and chemically active fraction of soil organic matter. It is a source of many agricultural and ecological benefits, among which are POM's contribution to C sequestration. Most of conventional research methods for studying organic matter dynamics involve measurements conducted on pre-processed i.e., ground and sieved soil samples. Unfortunately, grinding and sieving completely destroys soil structure, the component crucial for soil functioning and C protection. Importance of a better understanding of the role of soil structure and of the physical protection that it provides to soil C cannot be overstated; and analysis of quantities, characteristics, and decomposition rates of POM in soil samples with intact structure is among the key elements of gaining such understanding. However, a marked difficulty hindering the progress in such analyses is a lack of tools for identification and quantitative analysis of POM in intact soil samples. Recent advancement in applications of X-ray computed micro-tomography (μ-CT) to soil science has given an opportunity to conduct such analyses. The objective of the current study is to develop a procedure for identification and quantitative characterization of POM within intact soil samples using X-ray μ-CT images and to test performance of the proposed procedure on a set of multiple intact soil macro-aggregates. We used 16 4-6 mm soil aggregates collected at 0-15 cm depth from a Typic Hapludalf soil at multiple field sites with diverse agricultural management history. The aggregates have been scanned at SIMBIOS Centre, Dundee, Scotland at 10 micron resolution. POM was determined from the aggregate images using the developed procedure. The procedure was based on combining image pre-processing steps with discriminant analysis classification. The first component of the procedure consisted of image pre-processing steps based on the range of gray values (GV) along with shape and size of POM pieces. That was followed by discriminant analysis conducted using statistical and geostatistical characteristics of POM pieces. POM identified in the intact individual soil aggregates using the proposed procedure was in good agreement with POM measured in the studied aggregates using conventional lab method (R2=0.75). Of particular importance for accurate identification of POM in the images was the information on spatial characteristics of POM's GVs. Since this is the first attempt of POM determination, future work will be needed to explore how the proposed procedure performs under a variety of potentially influential factors, such as POM's origin and decomposition stage, X-ray scanning settings, image filtering and segmentation methods.

Quadrant III RFI draft report: Volume 1

DOE Office of Scientific and Technical Information (OSTI.GOV)

Not Available

1992-12-01

The purpose of the RCRA Facility Investigation (RFI) at The Portsmouth Gaseous Diffusion Plant (PORTS) is to acquire, analyze and interpret data that will: characterize the environmental setting, including ground water, surface water and sediment, soil and air; define and characterize sources of contamination; characterize the vertical and horizontal extent and degree of contamination of the environment; assess the risk to human health and the environment resulting from possible exposure to contaminants; and support the Corrective Measures Study (CMS), which will follow the RFI, if required. A total of 18 Solid Waste Management Units (SWMU's) were investigated. All surficial soilmore » samples (0--2 ft), sediment samples and surface-water samples proposed in the approved Quadrant III RFI Work Plan were collected as specified in the approved work plan and RFI Sampling Plan. All soil, sediment and surface-water samples were analyzed for parameters specified from the Target Compound List and Target Analyte List (TCL/TAL) as listed in the US EPA Statement of Work for Inorganic (7/88a) and Organic (2/88b) analyses for Soil and Sediment, and analyses for fluoride, Freon-113 and radiological parameters (total uranium, gross alpha, gross beta and technetium).« less

Quadrant III RFI draft report: Volume 1

DOE Office of Scientific and Technical Information (OSTI.GOV)

Not Available

1992-12-01

The purpose of the RCRA Facility Investigation (RFI) at The Portsmouth Gaseous Diffusion Plant (PORTS) is to acquire, analyze and interpret data that will: characterize the environmental setting, including ground water, surface water and sediment, soil and air; define and characterize sources of contamination; characterize the vertical and horizontal extent and degree of contamination of the environment; assess the risk to human health and the environment resulting from possible exposure to contaminants; and support the Corrective Measures Study (CMS), which will follow the RFI, if required. A total of 18 Solid Waste Management Units (SWMU`s) were investigated. All surficial soilmore » samples (0--2 ft), sediment samples and surface-water samples proposed in the approved Quadrant III RFI Work Plan were collected as specified in the approved work plan and RFI Sampling Plan. All soil, sediment and surface-water samples were analyzed for parameters specified from the Target Compound List and Target Analyte List (TCL/TAL) as listed in the US EPA Statement of Work for Inorganic (7/88a) and Organic (2/88b) analyses for Soil and Sediment, and analyses for fluoride, Freon-113 and radiological parameters (total uranium, gross alpha, gross beta and technetium).« less

Evaluation of carbon and nitrogen pools in different soil types amended with different organic inputs by thermogravimetric/calorimetric analysis

NASA Astrophysics Data System (ADS)

Yanardaǧ, Ibrahim H.; Zornoza, Raúl; Büyükkiliç-Yanardaǧ, Asuman; Acosta, Jose A.; Faz, Ángel; Mermut, Ahmet R.

2017-04-01

The objective of this study was to assess the short-term changes in soil organic C (SOC) and N pools after incubation of three different soil types (Regosol, Luvisol and Kastanozem) treated with three amendments differing in organic matter stability (raw pig slurry (PS), manure, and biochar (BC), and to establish relationships between different chemical, spectral and thermal/calorimetric data to assess if thermal/calorimetric analysis could replace conventional analyses to monitor changes in SOC and N poos. Thermogravimetry-Differential Scanning Calorimetry (TG-DSC) analysis showed that amendments had little effect on volatile SOC and inorganic matter, compared to unamended samples in all soils. All amendments significantly increased the labile SOC in Regosol. Manure and BC increased recalcitrant SOC in Regosol and Luvisol. BC significantly increased recalcitrant SOC in all soils. Refractory SOC slightly increased with amendments in the Luvisol compared to the control. These results support the findings obtained with chemical analyses. Selected evolved ions (m/z 30 and 44) detected by quadrupole mass spectrometry (QMS) confirmed findings from TG-DSC. Emissions of C and N containing gases from the Regosol significantly increased with the amendments because this soil contains low SOC content, and the application of these amendments provided additional C. An increase in the CO2 containing gas species (m/z 44) from volatile SOC was observed with PS application only in the Regosol. Carbon dioxide increments (m/z 44) from recalcitrant (380-475°C) and refractory (475-550/600°C) SOC pools were observed with all amendments in all soils especially with BC application. The evolved ions at m/z 44 were higher in the initial soil samples from Kastanozem than after incubation, suggesting a loss of organic compounds, mainly volatile and labile upon incubation. NO peaks (m/z 30) showed similar trends to the C containing gas species in all soils. We carried out linear regressions to estimate soil properties measured by conventional chemical procedures by the use of TG-DSC-QMS. We obtained accurate models to estimate SOC, soil carbonates, recalcitrant C, soluble C and soluble N. These results encourage the use of thermal analyses to study SOM dynamics in soils, since it provides feasible and accurate information about different organic and inorganic C and N fractions. Thermal methods are quite inexpensive, require little sample preparation, are rapid and give reproducible results. However, no relationship between thermal analyses and C and N mineralization and N volatilization was found, suggesting that this technique may be valid to assess the current value of different organic fractions in a soil in a concrete time, but not indicated to predict mineralization or volatilization trends after application of amendments.

Effects of heavy metal contamination of soils on micronucleus induction in Tradescantia and on microbial enzyme activities: a comparative investigation.

PubMed

Majer, Bernhard J; Tscherko, Dagmar; Paschke, Albrecht; Wennrich, Rainer; Kundi, Michael; Kandeler, Ellen; Knasmüller, Siegfried

2002-03-25

The aim of this study was to investigate correlation between genotoxic effects and changes of microbial parameters caused by metal contamination in soils. In total, 20 soils from nine locations were examined; metal contents and physicochemical soil parameters were measured with standard methods. In general, a pronounced induction of the frequency of micronuclei (MN) in the Tradescantia micronucleus (Trad-MN) assay was seen with increasing metal concentration in soils from identical locations. However, no correlations were found between metal contents and genotoxicity of soils from different locations. These discrepancies are probably due to differences of the physicochemical characteristics of the samples. Also, the microbial parameters depended on the metal content in soils from identical sampling locations. Inconsistent responses of the individual enzymes were seen in soils from different locations, indicating that it is not possible to define a specific marker enzyme for metal contamination. The most sensitive microbial parameters were dehydrogenase and arylsulfatase activity, biomass C, and biomass N. Statistical analyses showed an overall correlation between genotoxicity in Tradescantia on the one hand and dehydrogenase activity, biomass C, and the metabolic quotient on the other hand. In conclusion, the results of the present study show that the Trad-MN assay is suitable for the detection of genotoxic effects of metal contamination in soils and furthermore, that the DNA-damaging potential of soils from different origin cannot be predicted on the basis of chemical analyses of their metal concentrations.

Quantifying the chemical composition of soil organic carbon with solid-state 13C NMR

NASA Astrophysics Data System (ADS)

Baldock, J. A.; Sanderman, J.

2011-12-01

The vulnerability of soil organic carbon (SOC) to biological decomposition and mineralisation to CO2 is defined at least partially by its chemical composition. Highly aromatic charcoal-like SOC components are more stable to biological decomposition than other forms of carbon including cellulose. Solid-state 13C NMR has gained wide acceptance as a method capable of defining SOC chemical composition and mathematical fitting processes have been developed to estimate biochemical composition. Obtaining accurate estimates depends on an ability to quantitatively detect all carbon present in a sample. Often little attention has been paid to defining the proportion of organic carbon present in a soil that is observable in solid-state 13C NMR analyses of soil samples. However, if such data is to be used to inform carbon cycling studies, it is critical that quantitative assessments of SOC observability be undertaken. For example, it is now well established that a significant discrimination exists against the detection of the low proton content polyaromatic structures typical of charcoal using cross polarisation 13C NMR analyses. Such discrimination does not exist where direct polarisation analyses are completed. In this study, the chemical composition of SOC as defined by cross polarisation and direct polarisation13C NMR analyses will be compared for Australian soils collected from under a diverse range of agricultural managements and climatic conditions. Results indicate that where significant charcoal C contents exist, it is highly under-represented in the acquired CP spectra. For some soils, a discrimination against alkyl carbon was also evident. The ability to derive correction factors to compensate for such discriminations will be assessed and presented.

Estimating Children's Soil/Dust Ingestion Rates through Retrospective Analyses of Blood Lead Biomonitoring from the Bunker Hill Superfund Site in Idaho.

PubMed

von Lindern, Ian; Spalinger, Susan; Stifelman, Marc L; Stanek, Lindsay Wichers; Bartrem, Casey

2016-09-01

Soil/dust ingestion rates are important variables in assessing children's health risks in contaminated environments. Current estimates are based largely on soil tracer methodology, which is limited by analytical uncertainty, small sample size, and short study duration. The objective was to estimate site-specific soil/dust ingestion rates through reevaluation of the lead absorption dose-response relationship using new bioavailability data from the Bunker Hill Mining and Metallurgical Complex Superfund Site (BHSS) in Idaho, USA. The U.S. Environmental Protection Agency (EPA) in vitro bioavailability methodology was applied to archived BHSS soil and dust samples. Using age-specific biokinetic slope factors, we related bioavailable lead from these sources to children's blood lead levels (BLLs) monitored during cleanup from 1988 through 2002. Quantitative regression analyses and exposure assessment guidance were used to develop candidate soil/dust source partition scenarios estimating lead intake, allowing estimation of age-specific soil/dust ingestion rates. These ingestion rate and bioavailability estimates were simultaneously applied to the U.S. EPA Integrated Exposure Uptake Biokinetic Model for Lead in Children to determine those combinations best approximating observed BLLs. Absolute soil and house dust bioavailability averaged 33% (SD ± 4%) and 28% (SD ± 6%), respectively. Estimated BHSS age-specific soil/dust ingestion rates are 86-94 mg/day for 6-month- to 2-year-old children and 51-67 mg/day for 2- to 9-year-old children. Soil/dust ingestion rate estimates for 1- to 9-year-old children at the BHSS are lower than those commonly used in human health risk assessment. A substantial component of children's exposure comes from sources beyond the immediate home environment. von Lindern I, Spalinger S, Stifelman ML, Stanek LW, Bartrem C. 2016. Estimating children's soil/dust ingestion rates through retrospective analyses of blood lead biomonitoring from the Bunker Hill Superfund Site in Idaho. Environ Health Perspect 124:1462-1470; http://dx.doi.org/10.1289/ehp.1510144.

Differences in soil biological activity by terrain types at the sub-field scale in central Iowa US

DOE PAGES

Kaleita, Amy L.; Schott, Linda R.; Hargreaves, Sarah K.; ...

2017-07-07

Soil microbial communities are structured by biogeochemical processes that occur at many different spatial scales, which makes soil sampling difficult. Because soil microbial communities are important in nutrient cycling and soil fertility, it is important to understand how microbial communities function within the heterogeneous soil landscape. In this study, a self-organizing map was used to determine whether landscape data can be used to characterize the distribution of microbial biomass and activity in order to provide an improved understanding of soil microbial community function. Points within a row crop field in south-central Iowa were clustered via a self-organizing map using sixmore » landscape properties into three separate landscape clusters. Twelve sampling locations per cluster were chosen for a total of 36 locations. After the soil samples were collected, the samples were then analysed for various metabolic indicators, such as nitrogen and carbon mineralization, extractable organic carbon, microbial biomass, etc. It was found that sampling locations located in the potholes and toe slope positions had significantly greater microbial biomass nitrogen and carbon, total carbon, total nitrogen and extractable organic carbon than the other two landscape position clusters, while locations located on the upslope did not differ significantly from the other landscape clusters. However, factors such as nitrate, ammonia, and nitrogen and carbon mineralization did not differ significantly across the landscape. Altogether, this research demonstrates the effectiveness of a terrain-based clustering method for guiding soil sampling of microbial communities.« less

Differences in soil biological activity by terrain types at the sub-field scale in central Iowa US

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kaleita, Amy L.; Schott, Linda R.; Hargreaves, Sarah K.

Soil microbial communities are structured by biogeochemical processes that occur at many different spatial scales, which makes soil sampling difficult. Because soil microbial communities are important in nutrient cycling and soil fertility, it is important to understand how microbial communities function within the heterogeneous soil landscape. In this study, a self-organizing map was used to determine whether landscape data can be used to characterize the distribution of microbial biomass and activity in order to provide an improved understanding of soil microbial community function. Points within a row crop field in south-central Iowa were clustered via a self-organizing map using sixmore » landscape properties into three separate landscape clusters. Twelve sampling locations per cluster were chosen for a total of 36 locations. After the soil samples were collected, the samples were then analysed for various metabolic indicators, such as nitrogen and carbon mineralization, extractable organic carbon, microbial biomass, etc. It was found that sampling locations located in the potholes and toe slope positions had significantly greater microbial biomass nitrogen and carbon, total carbon, total nitrogen and extractable organic carbon than the other two landscape position clusters, while locations located on the upslope did not differ significantly from the other landscape clusters. However, factors such as nitrate, ammonia, and nitrogen and carbon mineralization did not differ significantly across the landscape. Altogether, this research demonstrates the effectiveness of a terrain-based clustering method for guiding soil sampling of microbial communities.« less

Can Infrared Spectroscopy Be Used to Measure Change in Potassium Nitrate Concentration as a Proxy for Soil Particle Movement?

PubMed Central

Luleva, Mila Ivanova; van der Werff, Harald; Jetten, Victor; van der Meer, Freek

2011-01-01

Displacement of soil particles caused by erosion influences soil condition and fertility. To date, the cesium 137 isotope (137Cs) technique is most commonly used for soil particle tracing. However when large areas are considered, the expensive soil sampling and analysis present an obstacle. Infrared spectral measurements would provide a solution, however the small concentrations of the isotope do not influence the spectral signal sufficiently. Potassium (K) has similar electrical, chemical and physical properties as Cs. Our hypothesis is that it can be used as possible replacement in soil particle tracing. Soils differing in texture were sampled for the study. Laboratory soil chemical analyses and spectral sensitivity analyses were carried out to identify the wavelength range related to K concentration. Different concentrations of K fertilizer were added to soils with varying texture properties in order to establish spectral characteristics of the absorption feature associated with the element. Changes in position of absorption feature center were observed at wavelengths between 2,450 and 2,470 nm, depending on the amount of fertilizer applied. Other absorption feature parameters (absorption band depth, width and area) were also found to change with K concentration with coefficient of determination between 0.85 and 0.99. Tracing soil particles using K fertilizer and infrared spectral response is considered suitable for soils with sandy and sandy silt texture. It is a new approach that can potentially grow to a technique for rapid monitoring of soil particle movement over large areas. PMID:22163843

Soil sampling strategies for site assessments in petroleum-contaminated areas.

PubMed

Kim, Geonha; Chowdhury, Saikat; Lin, Yen-Min; Lu, Chih-Jen

2017-04-01

Environmental site assessments are frequently executed for monitoring and remediation performance evaluation purposes, especially in total petroleum hydrocarbon (TPH)-contaminated areas, such as gas stations. As a key issue, reproducibility of the assessment results must be ensured, especially if attempts are made to compare results between different institutions. Although it is widely known that uncertainties associated with soil sampling are much higher than those with chemical analyses, field guides or protocols to deal with these uncertainties are not stipulated in detail in the relevant regulations, causing serious errors and distortion of the reliability of environmental site assessments. In this research, uncertainties associated with soil sampling and sample reduction for chemical analysis were quantified using laboratory-scale experiments and the theory of sampling. The research results showed that the TPH mass assessed by sampling tends to be overestimated and sampling errors are high, especially for the low range of TPH concentrations. Homogenization of soil was found to be an efficient method to suppress uncertainty, but high-resolution sampling could be an essential way to minimize this.

Advancements in the application of NanoSIMS and Raman microspectroscopy to investigate the activity of microbial cells in soils

DOE PAGES

Eichorst, Stephanie A.; Strasser, Florian; Woyke, Tanja; ...

2015-08-31

The combined approach of incubating environmental samples with stable isotope-labeled substrates followed by single-cell analyses through high-resolution secondary ion mass spectrometry (NanoSIMS) or Raman microspectroscopy provides insights into the in situ function of microorganisms. This approach has found limited application in soils presumably due to the dispersal of microbial cells in a large background of particles. We developed a pipeline for the efficient preparation of cell extracts from soils for subsequent single-cell methods by combining cell detachment with separation of cells and soil particles followed by cell concentration. The procedure was evaluated by examining its influence on cell recoveries andmore » microbial community composition across two soils. This approach generated a cell fraction with considerably reduced soil particle load and of sufficient small size to allow single-cell analysis by NanoSIMS, as shown when detecting active N2-fixing and cellulose-responsive microorganisms via 15N2 and 13C-UL-cellulose incubations, respectively. The same procedure was also applicable for Raman microspectroscopic analyses of soil microorganisms, assessed via microcosm incubations with a 13C-labeled carbon source and deuterium oxide (D2O, a general activity marker). Lastly, the described sample preparation procedure enables single-cell analysis of soil microorganisms using NanoSIMS and Raman microspectroscopy, but should also facilitate single-cell sorting and sequencing.« less

Pore water sampling in acid sulfate soils: a new peeper method.

PubMed

Johnston, Scott G; Burton, Edward D; Keene, Annabelle F; Bush, Richard T; Sullivan, Leigh A; Isaacson, Lloyd

2009-01-01

This study describes the design, deployment, and application of a modified equilibration dialysis device (peeper) optimized for sampling pore waters in acid sulfate soils (ASS). The modified design overcomes the limitations of traditional-style peepers, when sampling firm ASS materials over relatively large depth intervals. The new peeper device uses removable, individual cells of 25 mL volume housed in a 1.5 m long rigid, high-density polyethylene rod. The rigid housing structure allows the device to be inserted directly into relatively firm soils without requiring a supporting frame. The use of removable cells eliminates the need for a large glove-box after peeper retrieval, thus simplifying physical handling. Removable cells are easily maintained in an inert atmosphere during sample processing and the 25-mL sample volume is sufficient for undertaking multiple analyses. A field evaluation of equilibration times indicates that 32 to 38 d of deployment was necessary. Overall, the modified method is simple and effective and well suited to acquisition and processing of redox-sensitive pore water profiles>1 m deep in acid sulfate soil or any other firm wetland soils.

Heavy metal concentrations in soils as determined by laser-induced breakdown spectroscopy (LIBS), with special emphasis on chromium.

PubMed

Senesi, G S; Dell'Aglio, M; Gaudiuso, R; De Giacomo, A; Zaccone, C; De Pascale, O; Miano, T M; Capitelli, M

2009-05-01

Soil is unanimously considered as one of the most important sink of heavy metals released by human activities. Heavy metal analysis of natural and polluted soils is generally conducted by the use of atomic absorption spectroscopy (AAS) or inductively coupled plasma optical emission spectroscopy (ICP-OES) on adequately obtained soil extracts. Although in recent years the emergent technique of laser-induced breakdown spectroscopy (LIBS) has been applied widely and with increasing success for the qualitative and quantitative analyses of a number of heavy metals in soil matrices with relevant simplification of the conventional methodologies, the technique still requires further confirmation before it can be applied fully successfully in soil analyses. The main objective of this work was to demonstrate that new developments in LIBS technique are able to provide reliable qualitative and quantitative analytical evaluation of several heavy metals in soils, with special focus on the element chromium (Cr), and with reference to the concentrations measured by conventional ICP spectroscopy. The preliminary qualitative LIBS analysis of five soil samples and one sewage sludge sample has allowed the detection of a number of elements including Al, Ca, Cr, Cu, Fe, Mg, Mn, Pb, Si, Ti, V and Zn. Of these, a quantitative analysis was also possible for the elements Cr, Cu, Pb, V and Zn based on the obtained linearity of the calibration curves constructed for each heavy metal, i.e., the proportionality between the intensity of the LIBS emission peaks and the concentration of each heavy metal in the sample measured by ICP. In particular, a triplet of emission lines for Cr could be used for its quantitative measurement. The consistency of experiments made on various samples was supported by the same characteristics of the laser-induced plasma (LIP), i.e., the typical linear distribution confirming the existence of local thermodynamic equilibrium (LTE) condition, and similar excitation temperatures and comparable electron number density measured for all samples. An index of the anthropogenic contribution of Cr in polluted soils was calculated in comparison to a non-polluted reference soil. Thus, the intensity ratios of the emission lines of heavy metal can be used to detect in few minutes the polluted areas for which a more detailed sampling and analysis can be useful.

Contaminants in landfill soils - Reliability of prefeasibility studies.

PubMed

Hölzle, Ingo

2017-05-01

Recent landfill mining studies have researched the potential for resource recovery using samples from core drilling or grab cranes. However, most studies used small sample numbers, which may not represent the heterogeneous landfill composition. As a consequence, there exists a high risk of an incorrect economic and/or ecological evaluation. The main objective of this work is to investigate the possibilities and limitations of preliminary investigations concerning the crucial soil composition. The preliminary samples of landfill investigations were compared to the excavation samples from three completely excavated landfills in Germany. In addition, the research compared the reliability of prediction of the two investigation methods, core drilling and grab crane. Sampling using a grab crane led to better results, even for smaller investigations of 10 samples. Analyses of both methods showed sufficiently accurate results to make predictions (standard error 5%, level of confidence 95%) for most heavy metals, cyanide and PAH in the dry substance and for sulphate, barium, Benzo[a]pyrene, pH and the electrical conductivity in leachate analyses of soil type waste. While chrome and nickel showed less accurate results, the concentrations of hydrocarbons, TOC, DOC, PCB and fluorine (leachate) were not predictable even for sample numbers of up to 59. Overestimations of pollutant concentrations were more frequently apparent in drilling, and underestimations when using a grab crane. The dispersion of the element and elemental composition had no direct impact on the reliability of prediction. Thus, an individual consideration of the particular element or elemental composition for dry substance and leachate analyses is recommended to adapt the sample strategy and calculate an optimum sample number. Copyright © 2016 Elsevier Ltd. All rights reserved.

Evaluation of gravimetric ground truth soil moisture data collected for the agricultural soil moisture experiment, 1978 Colby, Kansas, aircraft mission

NASA Technical Reports Server (NTRS)

Arya, L. M.; Phinney, D. E. (Principal Investigator)

1980-01-01

Soil moisture data acquired to support the development of algorithms for estimating surface soil moisture from remotely sensed backscattering of microwaves from ground surfaces are presented. Aspects of field uniformity and variability of gravimetric soil moisture measurements are discussed. Moisture distribution patterns are illustrated by frequency distributions and contour plots. Standard deviations and coefficients of variation relative to degree of wetness and agronomic features of the fields are examined. Influence of sampling depth on observed moisture content an variability are indicated. For the various sets of measurements, soil moisture values that appear as outliers are flagged. The distribution and legal descriptions of the test fields are included along with examinations of soil types, agronomic features, and sampling plan. Bulk density data for experimental fields are appended, should analyses involving volumetric moisture content be of interest to the users of data in this report.

Geochemical analysis of soils and sediments, Coeur d'Alene drainage basin, Idaho: sampling, analytical methods, and results

USGS Publications Warehouse

Box, Stephen E.; Bookstrom, Arthur A.; Ikramuddin, Mohammed; Lindsay, James

2001-01-01

(Fe), manganese (Mn), arsenic (As), and cadmium (Cd). In general inter-laboratory correlations are better for samples within the compositional range of the Standard Reference Materials (SRMs) from the National Institute of Standards and Technology (NIST). Analyses by EWU are the most accurate relative to the NIST standards (mean recoveries within 1% for Pb, Fe, Mn, and As, 3% for Zn and 5% for Cd) and are the most precise (within 7% of the mean at the 95% confidence interval). USGS-EDXRF is similarly accurate for Pb and Zn. XRAL and ACZ are relatively accurate for Pb (within 5-8% of certified NIST values), but were considerably less accurate for the other 5 elements of concern (10-25% of NIST values). However, analyses of sample splits by more than one laboratory reveal that, for some elements, XRAL (Pb, Mn, Cd) and ACZ (Pb, Mn, Zn, Fe) analyses were comparable to EWU analyses of the same samples (when values are within the range of NIST SRMs). These results suggest that, for some elements, XRAL and ACZ dissolutions are more effective on the matrix of the CdA samples than on the matrix of the NIST samples (obtained from soils around Butte, Montana). Splits of CdA samples analyzed by CHEMEX were the least accurate, yielding values 10-25% less than those of EWU.

Soil Components in Heterogeneous Impact Glass in Martian Meteorite EETA79001

NASA Technical Reports Server (NTRS)

Schrader, C. M.; Cohen, B. A.; Donovan, J. J.; Vicenzi, E. P.

2010-01-01

Martian soil composition can illuminate past and ongoing near-surface processes such as impact gardening [2] and hydrothermal and volcanic activity [3,4]. Though the Mars Exploration Rovers (MER) have analyzed the major-element composition of Martian soils, no soil samples have been returned to Earth for detailed chemical analysis. Rao et al. [1] suggested that Martian meteorite EETA79001 contains melted Martian soil in its impact glass (Lithology C) based on sulfur enrichment of Lithology C relative to the meteorite s basaltic lithologies (A and B) [1,2]. If true, it may be possible to extract detailed soil chemical analyses using this meteoritic sample. We conducted high-resolution (0.3 m/pixel) element mapping of Lithology C in thin section EETA79001,18 by energy dispersive spectrometry (EDS). We use these data for principal component analysis (PCA).

TRIZ Innovative Technology of Design Used in the Development of a Technology Roadmap for Space Soil Penetrator Probes Including a Mini Air Bag Concept

NASA Technical Reports Server (NTRS)

Blusiu, Julian O.

1997-01-01

Many Future NASA missions will be designed to robotically explore planets, moons and asteroids by collecting soil samples and conducting in-situ analyses to establish ground composition and look for the presence of specific components.

Linking the Lab Experience with Everyday Life: An Analytical Chemistry Experiment for Agronomy Students

NASA Astrophysics Data System (ADS)

Gimenez, Sônia Maria N.; Yabe, Maria Josefa S.; Kondo, Neide K.; Mouriño, Rodrigo O.; Moura, Graziela Cristina R.

2000-02-01

Agronomy students generally lack interest in chemistry. The objective of this work was to modify the analytical chemistry curriculum to increase student interest. Samples of soils and plants prepared by students were introduced. Soil was treated with molasses residue, organic matter (chicken manure and humus obtained from goat excrement), and lime. The response of plants to the different soil treatments increased student interest in chemical analyses. Evaluation of several chemical and physicochemical parameters of samples demonstrated in a clear way the application of the theoretical and practical concepts of chemistry.

Nutrient limitation in soils and trees of a treeline ecotone in Rolwaling Himal, Nepal

NASA Astrophysics Data System (ADS)

Drollinger, Simon; Müller, Michael; Schickhoff, Udo; Böhner, Jürgen; Scholten, Thomas

2015-04-01

At a global scale, tree growth and thus the position of natural alpine treelines is limited by low temperatures. At landscape and local scales, however, the treeline position depends on multiple interactions of influencing factors and mechanisms. The aim of our research is to understand local scale effects of soil properties and nutrient cycling on tree growth limitation, and their interactions with other abiotic and biotic factors, in a near-natural alpine treeline ecotone of Rolwaling Himal, Nepal. In total 48 plots (20 m x 20 m) were investigated. Three north-facing slopes were separated in four different altitudinal zones with the characteristic vegetation of tree species Rhododendron campanulatum, Abies spectabilis, Betula utilis, Sorbus microphylla and Acer spec. We collected 151 soil horizon samples (Ah, Ae, Bh, Bs), 146 litter layer samples (L), and 146 decomposition layer samples (Of) in 2013, as well as 251 leaves from standing biomass (SB) in 2013 and 2014. All samples were analysed for exchangeable cations or nutrient concentrations of C, N, P, K, Mg, Ca, Mn, Fe and Al. Soil moisture, soil and surface air temperatures were measured by 34 installed sensors. Precipitation and air temperatures were measured by three climate stations. The main pedogenic process is leaching of dissolved organic carbon, aluminium and iron from topsoil to subsoil. Soil types are classified as podzols with generally low nutrient concentrations. Soil acidity is extremely high and humus quality of mineral soils is poor. Our results indicate multilateral interactions and a great spatial variability of essential nutrients within the treeline ecotone. Both, soil nutrients and leave macronutrient concentrations of nitrogen (N), magnesium (Mg), potassium (K) decrease significantly with elevation in the treeline ecotone. Besides, phosphorus (P) foliar concentrations decrease significantly with elevation. Based on regression analyses, low soil temperatures and malnutrition most likely affect tree growth in high altitudes. Thus, we assume a high influence of soil properties and nutrient supply on the position of alpine treeline at a local scale. In addition, a manganese (Mn) excess in foliage of woody species was determined above treeline. With the help of multivariate statistical approaches, potential determining factors of treeline position could be quantified.

Does Timing Matter? Temporal Stability of Soil-Magnetic Climate Proxies

NASA Astrophysics Data System (ADS)

Geiss, C. E.

2013-12-01

Numerous studies have shown that the rock-magnetic properties of soils can serve as valuable proxies of continental climates. Many studies average the magnetic properties of several closely spaced sites to reconstruct regional climate signals, but little is known about the temporal variability of soil-magnetic properties. We analyzed the magnetic properties of five, closely spaced (within 20 m from each other) soil profiles that were sampled over a period of five years between 2002 and 2006. The soil profiles are well-developed and display strong magnetic enhancement. According to land records, agricultural influence was minimal as the site had never been plowed and solely been used as pasture. Detailed soil descriptions and measurements of magnetic susceptibility (χ), anhysteretic and isothermal remanent magnetization (ARM, IRM), as well as coercivity parameters show that all studied profiles have very similar horizination and magnetic properties are virtually unchanged from year to year. The only differences between the soil profiles are the position and strength of redoximorphic features. These nanocrystalline iron-oxide deposits have little influence on the magnetic properties of the soils and the timing of soil sampling for magnetic analyses is not a critical factor when sampling for climatic reconstructions.

Geochemical Exploration Techniques Applicable in the Search for Copper Deposits

USGS Publications Warehouse

Chaffee, Maurice A.

1975-01-01

Geochemical exploration is an important part of copper-resource evaluation. A large number of geochemical exploration techniques, both proved and untried, are available to the geochemist to use in the search for new copper deposits. Analyses of whole-rock samples have been used in both regional and local geochemical exploration surveys in the search for copper. Analyses of mineral separates, such as biotite, magnetite, and sulfides, have also been used. Analyses of soil samples are widely used in geochemical exploration, especially for localized surveys. It is important to distinguish between residual and transported soil types. Orientation studies should always be conducted prior to a geochemical investigation in a given area in order to determine the best soil horizon and the best size of soil material for sampling in that area. Silty frost boils, caliche, and desert varnish are specialized types of soil samples that might be useful sampling media. Soil gas is a new and potentially valuable geochemical sampling medium, especially in exploring for buried mineral deposits in arid regions. Gaseous products in samples of soil may be related to base-metal deposits and include mercury vapor, sulfur dioxide, hydrogen sulfide, carbon oxysulfide, carbon dioxide, hydrogen, oxygen, nitrogen, the noble gases, the halogens, and many hydrocarbon compounds. Transported materials that have been used in geochemical sampling programs include glacial float boulders, glacial till, esker gravels, stream sediments, stream-sediment concentrates, and lake sediments. Stream-sediment sampling is probably the most widely used and most successful geochemical exploration technique. Hydrogeochemical exploration programs have utilized hot- and cold-spring waters and their precipitates as well as waters from lakes, streams, and wells. Organic gel found in lakes and at stream mouths is an unproved sampling medium. Suspended material and dissolved gases in any type of water may also be useful media. Samples of ice and snow have been used for limited geochemical surveys. Both geobotanical and biogeochemical surveys have been successful in locating copper deposits in many parts of the world. Micro-organisms, including bacteria and algae, are other unproved media that should be studied. Animals can be used in geochemical-prospecting programs. Dogs have been used quite successfully to sniff out hidden and exposed sulfide minerals. Tennite mounds are commonly composed of subsurface material, but have not as yet proved to be useful in locating buried mineral deposits. Animal tissue and waste products are essentially unproved but potentially valuable sampling media. Knowledge of the location of areas where trace-element-associated diseases in animals and man are endemic as well as a better understanding of these diseases, may aid in identifying regions that are enriched in or depleted of various elements, including copper. Results of analyses of gases in the atmosphere are proving valuable in mineral-exploration surveys. Studies involving metallic compounds exhaled by plants into the atmosphere, and of particulate matter suspended in the atmosphere are reviewed these methods may become important in the future. Remote-sensing techniques are useful for making indirect measurements of geochemical responses. Two techniques applicable to geochemical exploration are neutron-activation analysis and gamma-ray spectrometry. Aerial photography is especially useful in vegetation surveys. Radar imagery is an unproved but potentially valuable method for use in studies of vegetation in perpetually clouded regions. With the advent of modern computers, many new techniques, such as correlation analysis, regression analysis, discriminant analysis, factor analysis, cluster analysis, trend-surface analysis, and moving-average analysis can be applied to geochemical data sets. Selective use of these techniques can provide new insights into the interpretatio

Environmental prospection for PCDD/PCDF, PAH, PCB and heavy metals around the incinerator power plant of Reggio Emilia town (Northern Italy) and surrounding main roads.

PubMed

Capuano, F; Cavalchi, B; Martinelli, G; Pecchini, G; Renna, E; Scaroni, I; Bertacchi, M; Bigliardi, G

2005-03-01

Samples of soil, sediment and pine needles from the Reggio Emilia area were analysed in order to estimate the environmental pollution caused by an MSWI. PCDD/PCDF, PCB, PAH and metals were analysed in the collected samples. The data obtained showed relatively low pollution levels. Indeed, the PCDD/PCDF and PCB data were comparable to the values usually found in the grazing areas of the European Union countries. Metal concentrations in soils and sediments may be related to local geological occurrences and to agricultural activities. PAH values are significantly lower than the limit values set by the Italian law.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Rashid, Nur Shahidah Abdul; Sarmani, Sukiman; Majid, Amran Ab.

238U radionuclide is a naturally occuring radioactive material that can be found in soil. In this study, the solubility of 238U radionuclide obtained from various types of soil in synthetic gastrointestinal fluids was analysed by “US P in vitro” digestion method. The synthetic gastrointestinal fluids were added to the samples with well-ordered, mixed throughly and incubated according to the human physiology digestive system. The concentration of 238U radionuclide in the solutions extracted from the soil was measured using Induced Coupling Plasma Mass Spectrometer (ICP-MS). The concentration of 238U radionuclide from the soil samples in synthetic gastrointestinal fluids showed different valuesmore » due to different homogenity of soil types and chemical reaction of 238U radionuclide. In general, the solubility of 238U radionuclide in gastric fluid was higher (0.050 – 0.209 ppm) than gastrointestinal fluids (0.024 – 0.050 ppm). It could be concluded that the US P in vitro digestion method is practicle for estimating the solubility of 238U radionuclide from soil materials and could be useful for monitoring and risk assessment purposes applying to environmental, health and contaminated soil samples.« less

PIXE analysis of sand and soil from Ulaanbaatar and Karakurum, Mongolia

NASA Astrophysics Data System (ADS)

Markwitz, A.; Barry, B.; Shagjjamba, D.

2008-09-01

Twenty-one sand and soil samples were collected at the surface from 22 to 25 June 2007 at sampling sites from Ulaanbaatar to Karakurum, Mongolia. The sand samples were collected from constantly changing sand dunes which may still contain salt from prehistoric oceans. The dry sand and soil samples were processed for PIXE and PIGE analyses. A clear division between soils and sand become apparent in the silicon results. Concentrations of all bulk elements in human habitation samples and of Si, Al, K and Fe in dry lake/flood plain samples are similar to those in the soils and sands. Among elements which could be regarded as being at trace concentrations the average S concentration in the soils is 0.9 g kg-1 whereas it is not detected in the sand samples. Zinc and Cu concentrations are both higher in the soils than the sands and are strongly correlated. A surprising presence of uranium at a concentration of 350 mg kg-1 was detected in the PIXE measurement on one of the dry lake samples. Gamma spectrometry confirmed the presence of U in this sample and also at a lower level in a sample from the lake shore, but in none of the other samples. Further, the gamma spectrometry showed that 238U decay products were present only at a level corresponding to about 3 mg kg-1 U for a system in radioactive equilibrium, a figure which is typical for U in the earth's crust. Disequilibria between 238U and its decay products occur naturally but such a high degree of separation at high concentration would be unique if confirmed. PIXE and PIGE measurements of these samples highlight the difficulty in correlating trace element measurements with occurrence of indicators of sea salt in air particulate samples.

Massive processing of pyro-chromatogram mass spectra (py-GCMS) of soil samples using the PARAFAC2 algorithm

NASA Astrophysics Data System (ADS)

Cécillon, Lauric; Quénéa, Katell; Anquetil, Christelle; Barré, Pierre

2015-04-01

Due to its large heterogeneity at all scales (from soil core to the globe), several measurements are often mandatory to get a meaningful value of a measured soil property. A large number of measurements can therefore be needed to study a soil property whatever the scale of the study. Moreover, several soil investigation techniques produce large and complex datasets, such as pyrolysis-gas chromatography-mass spectrometry (Py-GC-MS) which produces complex 3-way data. In this context, straightforward methods designed to speed up data treatments are needed to deal with large datasets. GC-MS pyrolysis (py-GCMS) is a powerful and frequently used tool to characterize soil organic matter (SOM). However, the treatment of the results of a py-GCMS analysis of soil sample is time consuming (number of peaks, co-elution, etc.) and the treatment of large data set of py-GCMS results is rather laborious. Moreover, peak position shifts and baseline drifts between analyses make the automation of GCMS programs data treatment difficult. These problems can be fixed using the Parallel Factor Analysis 2 (PARAFAC 2, Kiers et al., 1999; Bro et al., 1999). This algorithm has been applied frequently on chromatography data but has never been applied to analyses of SOM. We developed a Matlab routine based on existing Matlab packages dedicated to the simultaneous treatment of dozens of pyro-chromatograms mass spectra. We applied this routine on 40 soil samples. The benefits and expected improvements of our method will be discussed in our poster. References Kiers et al. (1999) PARAFAC2 - PartI. A direct fitting algorithm for the PARAFAC2 model. Journal of Chemometrics, 13: 275-294. Bro et al. (1999) PARAFAC2 - PartII. Modeling chromatographic data with retention time shifts. Journal of Chemometrics, 13: 295-309.

A strong enrichment of potentially toxic elements (PTEs) in Nord-Trøndelag (central Norway) forest soil.

PubMed

Reimann, C; Fabian, K; Schilling, J; Roberts, D; Englmaier, P

2015-12-01

Analysis of soil C and O horizon samples in a recent regional geochemical survey of Nord-Trøndelag, central Norway (752 sample sites covering 25,000 km2), identified a strong enrichment of several potentially toxic elements (PTEs) in the O horizon. Of 53 elements analysed in both materials, Cd concentrations are, on average, 17 times higher in the O horizon than in the C horizon and other PTEs such as Ag (11-fold), Hg (10-fold), Sb (8-fold), Pb (4-fold) and Sn (2-fold) are all strongly enriched relative to the C horizon. Geochemical maps of the survey area do not reflect an impact from local or distant anthropogenic contamination sources in the data for O horizon soil samples. The higher concentrations of PTEs in the O horizon are the result of the interaction of the underlying geology, the vegetation zone and type, and climatic effects. Based on the general accordance with existing data from earlier surveys in other parts of northern Europe, the presence of a location-independent, superordinate natural trend towards enrichment of these elements in the O horizon relative to the C horizon soil is indicated. The results imply that the O and C horizons of soils are different geochemical entities and that their respective compositions are controlled by different processes. Local mineral soil analyses (or published data for the chemical composition of the average continental crust) cannot be used to provide a geochemical background for surface soil. At the regional scale used here surface soil chemistry is still dominated by natural sources and processes. Copyright © 2015 Elsevier B.V. All rights reserved.

Profiling Nematode Communities in Unmanaged Flowerbed and Agricultural Field Soils in Japan by DNA Barcode Sequencing

PubMed Central

Morise, Hisashi; Miyazaki, Erika; Yoshimitsu, Shoko; Eki, Toshihiko

2012-01-01

Soil nematodes play crucial roles in the soil food web and are a suitable indicator for assessing soil environments and ecosystems. Previous nematode community analyses based on nematode morphology classification have been shown to be useful for assessing various soil environments. Here we have conducted DNA barcode analysis for soil nematode community analyses in Japanese soils. We isolated nematodes from two different environmental soils of an unmanaged flowerbed and an agricultural field using the improved flotation-sieving method. Small subunit (SSU) rDNA fragments were directly amplified from each of 68 (flowerbed samples) and 48 (field samples) isolated nematodes to determine the nucleotide sequence. Sixteen and thirteen operational taxonomic units (OTUs) were obtained by multiple sequence alignment from the flowerbed and agricultural field nematodes, respectively. All 29 SSU rDNA-derived OTUs (rOTUs) were further mapped onto a phylogenetic tree with 107 known nematode species. Interestingly, the two nematode communities examined were clearly distinct from each other in terms of trophic groups: Animal predators and plant feeders were markedly abundant in the flowerbed soils, in contrast, bacterial feeders were dominantly observed in the agricultural field soils. The data from the flowerbed nematodes suggests a possible food web among two different trophic nematode groups and plants (weeds) in the closed soil environment. Finally, DNA sequences derived from the mitochondrial cytochrome oxidase c subunit 1 (COI) gene were determined as a DNA barcode from 43 agricultural field soil nematodes. These nematodes were assigned to 13 rDNA-derived OTUs, but in the COI gene analysis were assigned to 23 COI gene-derived OTUs (cOTUs), indicating that COI gene-based barcoding may provide higher taxonomic resolution than conventional SSU rDNA-barcoding in soil nematode community analysis. PMID:23284767

Reclamation of soils influenced by coal mining in Southern European Russia

NASA Astrophysics Data System (ADS)

Alekseenko, Vladimir; Bech, Jaume; Alekseenko, Alexey; Shvydkaya, Natalya; Roca, Núria

2016-04-01

In the recent decades, the concentrations of metals have increased in such media of biosphere as atmosphere, hydrosphere, pedosphere. The greatest geochemical changes have occurred in soils, which are the deposing medium where the high concentrations of metals are saved for years after their direct human use. Mining sites and beneficiation zones are the areas of the highest concentrations of metals in soils. Coal mining areas in the European part of Russia (Rostov region) were selected for a detailed consideration. Soil samples were taken from the uppermost soil horizons: layer of 0-30 cm. The soil samples were analysed for gross concentrations of Cu, Zn, Pb, Ag, Sn, Mo, Ba, Co, Ni, Mn, Ti, V, Cr, Ga, P, Li, Sr, Y, Yb, Nb, Sc, and Zr, using emission spectral analysis. All ordinary analyses were carried out in the certified and accredited laboratory. The external control was conducted by the X-ray fluorescence, gravimetric, and neutron activation analyses. Calculation of random and systematic errors showed high analyses repeatability and correctness. Several cases of self-purification of soils and restoration of landscapes were discussed. The way of remediation through the flooding of mining sites with water was investigated as well as filling of natural relief depressions with soils and dumps. The process of Technosols remediation at the sites occupied by tailings of waste heaps was considered separately. In conclusion: 1. The dominant contemporary way of remediation in Southern European Russia does not prevent the spread of metals through the decades. The modern underground coal mining leads to the destruction of soils in the area directly occupied by wastes and by rock dumps located nearby. 2. Soils have not formed yet as a result of self-restoration at the waste heaps at the age of 50 years, spontaneously combusted decades ago. The vegetation formed during this time virtually eliminates the occurrence of any significant soil-forming process. The ponds formed by the flooding of burning waste heaps, do not give possibility for the formation of soils and hardly contribute to plant growth. 3. The Technosols of waste heaps' surface layers are different from the surrounding steppe soils in geochemical features and mineralogical composition at every stage of their development. 4. The atmospheric and water inflow of material from the waste heaps changes (in the cases studied - worsens) the state of steppe soils within a radius of 1 km, and leads to the increase of heavy metals content in these soils. Keywords: Technosols, Technogenic Superficial Formations, self-purification, flooding

Geological sources of fluoride and acceptable intake of fluoride in an endemic fluorosis area, southern Iran.

PubMed

Battaleb-Looie, Sedigheh; Moore, Farid; Jacks, Gunnar; Ketabdari, Mohammad Reza

2012-10-01

The present study is the first attempt to put forward possible source(s) of fluoride in the Dashtestan area, Bushehr Province, southern Iran. In response to reports on the high incidence of dental fluorosis, 35 surface and groundwater samples were collected and analysed for fluoride. The results indicate that dissolved fluoride in the study area is above the maximum permissible limit recommended by the World Health Organization (WHO). An additional 35 soil and rock samples were also collected and analysed for fluoride, and rock samples were subjected to petrographic investigations and X-ray diffraction. The results of these analyses show that the most likely source for fluoride in the groundwater is from clay minerals (chlorite) and micas (muscovite, sericite, and biotite) in the soils and rocks in the area. We also note that due to the high average temperatures all year round and excessive water consumption in the area, the optimum fluoride dose level should be lower than that recommended by the WHO.

Thermal Analyses of Apollo Lunar Soils Provide Evidence for Water in Permanently Shadowed Areas

NASA Technical Reports Server (NTRS)

Cooper, Bonnie L.; Smith, M. C.; Gibson, E. K.

2011-01-01

Thermally-evolved-gas analyses were performed on the Apollo lunar soils shortly after their return to Earth [1-8]. The analyses revealed the presence of water evolving at temperatures above 200 C. Of particular interest are samples that were collected from permanently-shadowed locations (e.g., under a boulder) with a second sample collected in nearby sunlight, and pairs in which one was taken from the top of a trench, and the second was taken at the base of the trench, where the temperature would have been -10 to -20 C prior to the disturbance [9]. These samples include 63340/63500, 69941/69961, and 76240/76280. At the time that this research was first reported, the idea of hydrated minerals on the lunar surface was somewhat novel. Nevertheless, goethite was observed in lunar breccias from Apollo 14 [10], and it was shown that goethite, hematite and magnetite could originate in an equilibrium assemblage of lunar rocks

Oligotyping reveals stronger relationship of organic soil bacterial community structure with N-amendments and soil chemistry in comparison to that of mineral soil at Harvard Forest, MA, USA.

PubMed

Turlapati, Swathi A; Minocha, Rakesh; Long, Stephanie; Ramsdell, Jordan; Minocha, Subhash C

2015-01-01

The impact of chronic nitrogen amendments on bacterial communities was evaluated at Harvard Forest, Petersham, MA, USA. Thirty soil samples (3 treatments × 2 soil horizons × 5 subplots) were collected in 2009 from untreated (control), low nitrogen-amended (LN; 50 kg NH4NO3 ha(-1) yr(-1)) and high nitrogen-amended (HN; 150 kg NH4NO3 ha(-1) yr(-1)) plots. PCR-amplified partial 16S rRNA gene sequences made from soil DNA were subjected to pyrosequencing (Turlapati et al., 2013) and analyses using oligotyping. The parameters M (the minimum count of the most abundant unique sequence in an oligotype) and s (the minimum number of samples in which an oligotype is expected to be present) had to be optimized for forest soils because of high diversity and the presence of rare organisms. Comparative analyses of the pyrosequencing data by oligotyping and operational taxonomic unit clustering tools indicated that the former yields more refined units of taxonomy with sequence similarity of ≥99.5%. Sequences affiliated with four new phyla and 73 genera were identified in the present study as compared to 27 genera reported earlier from the same data (Turlapati et al., 2013). Significant rearrangements in the bacterial community structure were observed with N-amendments revealing the presence of additional genera in N-amended plots with the absence of some that were present in the control plots. Permutational MANOVA analyses indicated significant variation associated with soil horizon and N treatment for a majority of the phyla. In most cases soil horizon partitioned more variation relative to treatment and treatment effects were more evident for the organic (Org) horizon. Mantel test results for Org soil showed significant positive correlations between bacterial communities and most soil parameters including NH4 and NO3. In mineral soil, correlations were seen only with pH, NH4, and NO3. Regardless of the pipeline used, a major hindrance for such a study remains to be the lack of reference databases for forest soils.

Using the VegeSafe community science program to measure, evaluate risk and advise on soil-metal contamination in Sydney backyards

NASA Astrophysics Data System (ADS)

Taylor, M. P.; Rouillon, M.; Harvey, P.; Kristensen, L. J.; Steven, G. G.

2016-12-01

The extent of metal contamination in Sydney residential garden soils was evaluated using data collated from a 3-year university community science program called VegeSafe. Despite knowledge of industrial and urban contamination amongst scientists, the general public remains under informed about the potential risks of exposure from legacy contaminants in their home environments. The Australian community was offered free soil metal screening allowing access to soil samples for research purposes. Participants followed specific soil sampling instructions and posted samples to the University for analysis with a field portable X-ray Fluorescence (pXRF) spectrometer. Over the 3-year period >5000 soil samples were collected and analysed from >1000 households across Australia, primarly from vegetable gardens. As anticipated, the primary soil metal of concern was lead: mean concentrations were 413 mg/kg (front garden), 707 mg/kg (drip line), 226 mg/kg (back yard) and 301 mg/kg (vegetable garden). The Australian soil lead guideline of 300 mg/kg for residential yards was exceeded at 40% of domestic properties. Soil lead concentrations >1000 mg/kg were identified in 15% of Sydney backyards. The incidence of highest soil lead contamination was greatest in the inner city area with concentrations declining towards background values of 20-30 mg/kg at 30-40 km distance from the city. Community engagement with VegeSafe participants has resulted in useful outcomes: dissemination of knowledge related to contamination legacies and health risks, owners building raised beds containing clean soil, and, in numerous cases owners replacing their contaminated soil. This study demonstrates the potential for similar community science programs for expediting mass sample collection of soils and dusts for analysis of traditional and emerging contaminants within the home environment.

Occurrence and diversity of naphthalene dioxygenase genes in soil microbial communities from the Maritime Antarctic.

PubMed

Flocco, Cecilia G; Gomes, Newton C M; Mac Cormack, Walter; Smalla, Kornelia

2009-03-01

The diversity of naphthalene dioxygenase genes (ndo) in soil environments from the Maritime Antarctic was assessed, dissecting as well the influence of the two vascular plants that grow in the Antarctic: Deschampsia antarctica and Colobanthus quitensis. Total community DNA was extracted from bulk and rhizosphere soil samples from Jubany station and Potter Peninsula, South Shetland Islands. ndo genes were amplified by a nested PCR and analysed by denaturant gradient gel electrophoresis approach (PCR-DGGE) and cloning and sequencing. The ndo-DGGE fingerprints of oil-contaminated soil samples showed even and reproducible patterns, composed of four dominant bands. The presence of vascular plants did not change the relative abundance of ndo genotypes compared with bulk soil. For non-contaminated sites, amplicons were not obtained for all replicates and the variability among the fingerprints was comparatively higher, likely reflecting a lower abundance of ndo genes. The phylogenetic analyses showed that all sequences were affiliated to the nahAc genes closely related to those described for Pseudomonas species and related mobile genetic elements. This study revealed that a microdiversity of nahAc-like genes exists in microbial communities of Antarctic soils and quantitative PCR indicated that their relative abundance was increased in response to anthropogenic sources of pollution.

Nitrogen and phosphorus resorption in a neotropical rain forest of a nutrient-rich soil.

PubMed

Martínez-Sánchez, José Luis

2005-01-01

In tropical forests with nutrient-rich soil tree's nutrient resorption from senesced leaves has not always been observed to be low. Perhaps this lack of consistence is partly owing to the nutrient resorption methods used. The aim of the study was to analyse N and P resorption proficiency from tropical rain forest trees in a nutrient-rich soil. It was hypothesised that trees would exhibit low nutrient resorption in a nutrient-rich soil. The soil concentrations of total N and extractable P, among other physical and chemical characteristics, were analysed in 30 samples in the soil surface (10 cm) of three undisturbed forest plots at 'Estaci6n de Biologia Los Tuxtlas' on the east coast of Mexico (18 degrees 34' - 18 degrees 36' N, 95 degrees 04' - 95 degrees 09' W). N and P resorption proficiency were determined from senescing leaves in 11 dominant tree species. Nitrogen was analysed by microkjeldahl digestion with sulphuric acid and distilled with boric acid, and phosphorus was analysed by digestion with nitric acid and perchloric acid. Soil was rich in total N (0.50%, n = 30) and extractable P (4.11 microg g(-1) n = 30). As expected, trees showed incomplete N (1.13%, n = 11) and P (0.11%, n = 1) resorption. With a more accurate method of nutrient resorption assessment, it is possible to prove that a forest community with a nutrient-rich soil can have low levels of N and P resorption.

Environmental implications of element emissions from phosphate-processing operations in southeastern Idaho

USGS Publications Warehouse

Severson, R.C.; Gough, L.P.

1979-01-01

In order to assess the contribution to plants and soils of certain elements emitted by phosphate processing, we sampled sagebrush, grasses, and A- and C-horizon soils along upwind and downwind transects at Pocatello and Soda Springs, Idaho. Analyses for 70 elements in plants showed that, statistically, the concentration of 7 environmentally important elements, cadmium, chromium, fluorine, selenium, uranium, vanadium, and zinc, were related to emissions from phosphate-processing operations. Two additional elements, lithium and nickel, show probable relationships. The literature on the effects of these elements on plant and animal health is briefly surveyed. Relations between element content in plants and distance from the phosphate-processing operations were stronger at Soda Springs than at Pocatello and, in general, stronger in sagebrush than in the grasses. Analyses for 58 elements in soils showed that, statistically, beryllium, fluorine, iron, lead, lithium, potassium, rubidium, thorium, and zinc were related to emissions only at Pocatello and only in the A horizon. Moreover, six additional elements, copper, mercury, nickel, titanium, uranium, and vanadium, probably are similarly related along the same transect. The approximate amounts of elements added to the soils by the emissions are estimated. In C-horizon soils, no statistically significant relations were observed between element concentrations and distance from the processing sites. At Soda Springs, the nonuniformity of soils at the sampling locations may have obscured the relationship between soil-element content and emissions from phosphate processing.

Radioactive Strontium in Soil, Crops, Foodstuffs, and Human Bones in the Netherlands. Part I; RADIOACTIEF STRONTIUM IN GROND, GEWASSEN, VOEDINGSMIDDELEN EN MENSELUK BOT IN NEDERLAND. DEEL I

DOE Office of Scientific and Technical Information (OSTI.GOV)

Barendsen, G.W.; Beusker, T.L.J.; Bleichrodt, J.F.

1959-02-01

Measurements of Sr/sup 89/ and Sr/sup 89/ in soil, grass, milk, and foodstuff samples are reported. Analyses of human urine were made which show wide daily variations. Human bone samples from children up to 15 yr age were studied. The results agree with those from the U.K. and the U.S.A. (T.R.H.)

Magnetic properties of alluvial soils polluted with heavy metals

NASA Astrophysics Data System (ADS)

Dlouha, S.; Petrovsky, E.; Boruvka, L.; Kapicka, A.; Grison, H.

2012-04-01

Magnetic properties of soils, reflecting mineralogy, concentration and grain-size distribution of Fe-oxides, proved to be useful tool in assessing the soil properties in terms of various environmental conditions. Measurement of soil magnetic properties presents a convenient method to investigate the natural environmental changes in soils as well as the anthropogenic pollution of soils with several risk elements. The effect of fluvial pollution with Cd, Cu, Pb and Zn on magnetic soil properties was studied on highly contaminated alluvial soils from the mining/smelting district (Příbram; CZ) using a combination of magnetic and geochemical methods. The basic soil characteristics, the content of heavy metals, oxalate, and dithionite extractable iron were determined in selected soil samples. Soil profiles were sampled using HUMAX soil corer and the magnetic susceptibility was measured in situ, further detailed magnetic analyses of selected distinct layers were carried out. Two types of variations of magnetic properties in soil profiles were observed corresponding to indentified soil types (Fluvisols, and Gleyic Fluvisols). Significantly higher values of topsoil magnetic susceptibility compared to underlying soil are accompanied with high concentration of heavy metals. Sequential extraction analysis proved the binding of Pb, Zn and Cd in Fe and Mn oxides. Concentration and size-dependent parameters (anhysteretic and isothermal magnetization) were measured on bulk samples in terms of assessing the origin of magnetic components. The results enabled to distinguish clearly topsoil layers enhanced with heavy metals from subsoil samples. The dominance of particles with pseudo-single domain behavior in topsoil and paramagnetic/antiferromagnetic contribution in subsoil were observed. These measurements were verified with room temperature hysteresis measurement carried out on bulk samples and magnetic extracts. Thermomagnetic analysis of magnetic susceptibility measured on magnetic extracts indicated the presence of magnetite/maghemite in the uppermost layers, and strong mineralogical transformation of iron oxyhydroxides during heating. Magnetic techniques give valuable information about the soil Fe oxides, which are useful for investigation of the environmental effects in soil. Key words: magnetic methods, Fe oxides, pollution, alluvial soils.

Constraints on Martian Soil Composition as Inferred from Viking XRFS and Pathfinder APXS and IMP Data

NASA Technical Reports Server (NTRS)

Bridges, N. T.; Crisp, J. A.

2000-01-01

With the successful operation of the Alpha Proton X-Ray Spectrometer (APXS) during 1997's Mars Pathfinder (MPF) mission, geochemistry data are now available from three sites on Mars. APXS raw spectra for six soils and five rocks have been converted to compositional abundances. The Viking Lander X-Ray Fluorescence Spectrometer (XRFS) successfully measured elemental abundances of nine soils at Viking 1 and eight soils at Viking 2. Although the three landing sites are located in different parts of Mars, the soils exhibit broad similarities, with an iron-rich chemistry similar to that of palagonite. However, the Pathfinder sods show some significant differences from Viking soils, notably an enrichment in silica and depletion in sulfur. The XRFS samples consisted of near-surface and deep (up to 22 cm) soils acquired by a collector head at the cod of a retractable boom. It was possible to collect and analyze pebbles as large a 2 cm, but only sod, some in the form of consolidated clods, was sampled. In contrast, the APXS measured materials in situ. This resulted in MPF "rock" analyses that probably had a significant dust component and, as explored here, "soil" analyses that may have contained a rocky component We examine several possibilities to explain these differences and other attributes of the APXS and XRFS data sets: 1) The APXS soil measurements actually sampled a mixture of Viking-like soil and small bits of high-silica, low-sulfur rock, 2) The soils were derived from high-silica rocks mixed with a minor component of globally-homogenized dust; these soils are chemically distinct and have a separate geologic history from the Viking soils. 3) The weathering environment was different at the Pathfinder landing site compared to the Viking sites, and 4) Uncertainties in the XRFS and APXS measurements result in reported elemental abundances different than those that are actually present We show that none of the possibilities can be discounted, but that an MPF soil distinct in composition from Viking sods is best supported by the available data.

Short-term effects of prescribed fire for pasture management on soil water repellency in the Central Pyrenees (NE-Spain)

NASA Astrophysics Data System (ADS)

Girona García, Antonio; María Armas-Herrera, Cecilia; Martí-Dalmau, Clara; Badía-Villas, David; Ortiz-Perpiñán, Oriol

2016-04-01

The decrease of livestock grazing during the last decades in the Central Pyrenees has led to a regression of grasslands in favour of shrublands, mainly composed by Echinospartum horridum. Prescribed burning might be a suitable tool for the control of this species that limits pastures development and therefore, the reclamation of grasslands; although, its effects on soil properties are still uncertain [1]. Controlled burnings are usually performed in spring or autumn, when soil moisture is high and temperature low, being easier to control and also reducing its effects on soil properties. However, burning during the wet seasons can increase the risk of soil erosion as the vegetation cover is partially destroyed. In this sense, soil water repellency (SWR) plays an important role reducing the infiltration rates and, thus, increasing runoff and soil erosion [2]. Then, it is of special interest to study parameters that influence SWR such as soil moisture, soil organic carbon (SOC) content and soil biological activity [3]. The aim of this work is, to analyse the effects of controlled burning on SWR as well as some of the influencing factors on this parameter. To achieve this, soil sampling was carried out in two prescribed fire events that took place in the Central Pyrenees: Tella (April, 2015) and Buisán (November, 2015). Temperature was simultaneously recorded during the fire via thermocouples placed at the surface level and at 1 cm, 2 cm and 3 cm depth. In each event, topsoil was scrapped and sampled from 0-1 cm, 1-2 cm and 2-3 cm depth in each sampling point (3 for Tella and 4 for Buisán) just before and immediately after burning. We analysed SWR persistence (Water Drop Penetration Time, WDPT) and intensity (Ethanol Percentage Test, EPT) as well as total C and N, microbial C, β-glucosidase activity, soil moisture and pH. Temperature measurements indicated a higher fire intensity in Tella than in Buisán burning. Surface unburned samples presented extreme SWR values for Tella (2726 s) and strong values for Buisán (191 s) according to the WDPT test, significantly decreasing with depth. Preliminary results showed that burning affected SWR, significantly reducing WDPT down to 3 cm in Tella (from extreme to strong) and 2 cm depth in Buisán (from strong to slight). EPT results indicated a significant decrease in SWR intensity down to 2 cm in Tella and 1 cm in Buisán with burning. On the other hand, no differences were observed regarding soil moisture between burned and unburned samples, although a trend to decreasing was observed with fire. Further analyses will allow us to explain and support in detail the variations observed in SWR with prescribed burning. [1] Shakesby, R.A. et al. (2015). Impacts of prescribed fire on soil loss and soil quality: An assessment based on an experimentally-burned catchment in central Portugal. Catena 128: 278-293. [2] Bodí, M.B. et al. (2013). Spatial and temporal variations of water repellency and probability of its occurrence in calcareous Mediterranean rangeland soils affected by fire. Catena 108: 14-25. [3] Jordán, A. et al. (2013). Soil water repellency: Origin, assessment and geomorphological consequences. Catena 108: 1-5.

Preliminary results on the influence of mineralogy on the turnover rates of SOM from different Hungarian soils

NASA Astrophysics Data System (ADS)

Zacháry, Dóra; Szalai, Zoltán; Jakab, Gergely; Németh, Tibor; Sipos, Péter; Filep, Tibor

2016-04-01

Fine textured soils generally considered containing more microbial biomass, and having a lower rate of biomass turnover and organic matter decomposition than coarse textured soils. In spite of this, several recent studies have shown contradicting trends. For example, the relative importance of different clay minerals for stabilizing SOM remains an open question. The aim of this study is to evaluate soil mineralological effect on the turnover of SOM by identifying and quantifying soil phyllosilicates. Our samples are derived from C3 forests and C3 croplands from different sites of Hungary. C4 maize residues are added to the soils in order to get natural 13C enrichment as tracer for the young carbon. Bulk samples of the soils from 0 to 20 cm depth were collected. The samples were dried at room temperature and preincubated in the dark for 4 months at 20 °C. The basic soil properties (pH, cation exchange capacity) were analysed after 2 mm sieving and homogenization. The amount of total C and N in the soils and maize residues were analysed using NDIR-chemiluminescent analyzer (Tekmar Dohrman Apollo 9000N). Particle size distribution was determined by laser diffraction (Fritsch Analysette MicroTec 22 plus) and particle imaging method (Malvern Morphologi G3-ID). The mineralological composition of the samples was determined by X-ray diffraction (Philips PW 1730 X-ray diffractometer). Moist soil equivalent to 400 g dry soil mixed with 2 g maize leaves is kept in air tight glass chambers for 183 days at 20°C. The leaves had previously been dried at 60 °C, were cut into pieces and sieved through a 2 mm mesh. The evolved CO2 is trapped by 10 mL 2 M NaOH, which is exchanged on day 1, 3, 5, 7, 10, 14, 21, 28 and subsequently every 31 days. The fractional abundance of 13C of the soils, the plant material and the evolved CO2 is measured with isotope ratio mass spectrometer (Thermo Scientific Delta V IRMS). Our work show the preliminary results on the link between phyllosilicate mineralogy and soil C dynamic by reporting a quantified phyllosilicate data in connection with SOM turnover and stabilization. Acknowledgement This research was supported by the Hungarian Scientific National Fund (OTKA K100180).

Reindeer grazing in subarctic boreal forest - influences on the soil carbon dynamics

NASA Astrophysics Data System (ADS)

Koster, Kajar; Berninger, Frank; Köster, Egle; Pumpanen, Jukka

2015-04-01

Reindeer (Rangifer tarandus L.) are the most important large mammalian herbivores in the northern ecosystems , which have many effects on plant diversity, soil nutrient cycling and soil organic matter decomposition. Changes caused by reindeer in vegetation have indirect effects on physical features of the soil e.g. soil microclimate, root biomass and also on soil C dynamics. Earlier, the role of reindeer grazing in ground vegetation dynamics and in soil carbon (C) dynamics has been mostly investigated in open tundra heaths. The objectives of this study were to examine if and how the reindeer grazing (and the possible temperature changes in soil caused by heavy grazing) is affecting the soil C dynamics (CO2 efflux from the soil, C storage in soil, microbial biomass in the soil). In a field experiment in Finnish Lapland, in Värriö Strict Nature Reserve (67° 46' N, 29° 35' E) we have assessed the changes occurring in above- and belowground biomasses, and soil C dynamics (CO2 efflux, soil C content, soil microbial biomass C) among areas grazed and ungrazed by reindeer. Our study areas are located in the northern boreal subarctic coniferous forest at the zone of the last intact forest landscapes in Fennoscandia, where large areas of relatively undisturbed subarctic Scots pine (Pinus sylvestris L.) forests can still be found. The sample plots located in the Värriö Strict Nature Reserve (10 sample plots in total established in year 2013) are situated along the borderline between Finland and Russia, where the ungrazed area was excluded from the reindeer grazing already in 1918, to prevent the Finnish reindeer from going to the Russian side and there are not many reindeer on Russian side of the area. To characterize the stands we have established circular sample plots on areas with a radius of 11.28 m, where different tree characteristics were measured (diameter at 1.3 m, height, height of a tree, crown height, crown diameter, stand age, etc.). On every sample plot, four 0.5 x 0.5 m ground vegetation squares were established for species composition and recovery measurements. The squares were photographed for ground vegetation coverage analyses and definition of species composition. Ground vegetation biomass was determined from 4 sample squares (0.2 x 0.2 m) located systematically inside the circular sample plots (close to the ground vegetation squares). For soil C content measurements 5 soil cores (150 mm in length and 50 mm in diameter) were taken from every sample plot in Värriö and in Sodankylä. The soil cores were divided according to the morphological soil horizons; to litter and organic layer (F-horizon) and humus layer (O-horizon). The layers in mineral soil were divided to eluvial (A-horizon) and illuvial (B-horizon), and sieved. All roots were separated for root biomass calculations. The soil C content was measured with an elemental analyser (varioMAX CN elemental analyser, Elementar Analysensysteme GmbH, Germany). The soil respiration rates were measured only in Värriö study areas. In order to determine the CO2 efflux from soil to atmosphere, manual chamber measurements with a diffusion type CO2 probe (GMP343), were performed on 6 collars at each sample plot from June till September (five times per collar) at measuring intervals of two weeks. Soil microbial biomass was measured from five soil samples (soil from lower humus layer) per sample plot in Värriö. To determine the soil microbial C biomass (Cmic) and soil microbial N biomass (Nmic) chloroform fumigation direct extraction method was used. The average soil temperatures during the growing season (from June till September) were similar in all sample plots in Värriö, ranging from 10.9 to 11.5 ° C. There were also no differences between daily average temperatures or soil moisture between grazed and ungrazed areas. There was no statistically significant effect of reindeer grazing on soil C content, although it was mainly higher in grazed area compared to the ungrazed area. Also there was no significant differences in the soil CO2 efflux between the grazed and ungrazed area. This means that although the soil CO2 efflux was mostly lower in the ungrazed area, reindeer herding had no significant influence on the soil CO2 efflux. The CO2 effluxes were lowest in June. In July and August, the CO2 effluxes were more than two times higher compared to June. The microbial biomass C (Cmic) measured from humus horizon was lower in the grazed areas compared to the ungrazed areas, but the difference was not statistically significant. However, the microbial biomass N (Nmic) was significantly lower (p > 0.05) in the grazed areas compared to the ungrazed areas. We found also that grazing decreased significantly the biomass and cover of lichens in the coniferous forests. In Sodankylä the biomass of lichens was decreased around 74% due to grazing. In Värriö the decrease was even bigger, there the amount of lichen biomass was decreased more than 90% due to reindeer grazing. Ttal above ground biomass was higher in the area where no reindeer grazing had occurred. Moreover, the tree biomass was higher in the area with no grazing and tree regeneration was heavily affected by grazing, as we had much less tree regeneration in the grazed areas compared to the ungrazed areas.

Shrubby Reed-Mustard Habitat: Parent Material, Soil, and Landscape Characteristics

NASA Astrophysics Data System (ADS)

Kelly, L. S.; Boettinger, J. L.

2012-12-01

Shrubby reed-mustard (Glaucocarpum suffrutescens, a.k.a. Schoenocrambe suffrutescens, Glaucocarpum suffrutescens, or Hesperidanthus suffrutescens) is an endangered perennial shrub endemic to the southern Uinta Basin in northeast Utah. Only seven populations of shrubby reed-mustard have been identified. The arid area where the plant grows is rich in natural gas and oil deposits, as well as oil shale. Oil wells already dot the landscape, and there is significant concern that further development of these resources will threaten the continued existence of shrubby reed-mustard. Determination of the parent material, soil and landscape characteristics associated with shrubby reed-mustard habitat is imperative to facilitate conservation management. Shrubby reed-mustard grows where little else does and, based on field observations and remotely sensed spectral data, appears to occur in a particular type of strata. Our objective is to identify the physical and chemical characteristics of shrubby reed-mustard's environment. Site characteristics such as parent material and associated vegetation have been identified and documented. Soil properties such as water-soluble and total leachable elements, particle-size distribution, organic carbon, cation exchange capacity, total nitrogen, and available phosphorus and potassium are being determined. During the course of this investigation, soils within four shrubby reed-mustard habitat areas were sampled. Soils from non-shrubby reed-mustard areas adjacent to the four shrubby reed-mustard populations were also sampled. Soil samples were collected from a total of twenty-five shrubby reed-mustard soil pits and twenty-four non-shrubby reed-mustard soil pits. The soil horizons of each pedon were delineated, and samples were collected from each horizon. Field data indicate that shrubby reed-mustard occurs exclusively in shale-derived, shallow soils on bedrock-controlled uplands. Although there is some overlap of plant species on both types of soils, soils that do not support shrubby reed-mustard are dominated by black sage, a species not found in shrubby reed-mustard habitat. To date, statistical analyses to compare shrubby reed-mustard sites and non-shrubby reed-mustard sites have included Mann-Whitney rank sum tests and t-tests. Statistical results to date show that chemical properties differ between shrubby reed-mustard and non-shrubby reed-mustard sites. Concentrations of several soluble and total metals were significantly higher in shrubby reed-mustard soils compared to adjacent soils, including copper, lead, nickel, and lithium. Soluble, total, and available phosphorus were significantly lower in shrubby reed-mustard soils than in non-shrubby reed-mustard soils. Elevated metals may be indicative of shrubby reed-mustard tolerance of these elements, while low phosphorus concentrations in shrubby reed-mustard soils may indicate that this plant can tolerate low-nutrient status soils. Additional laboratory analyses are underway to further characterize the habitat of shrubby reed-mustard. Descriptive analysis is continuing. Statistical analyses will be finalized upon completion of all laboratory tests. Based on these determinations, shrubby reed-mustard habitat will be better defined and understood, which will assist with the preservation of this endangered species in the face of further resource development.

Soil microbial diversity in the vicinity of desert shrubs.

PubMed

Saul-Tcherkas, Vered; Unc, Adrian; Steinberger, Yosef

2013-04-01

Water and nutrient availability are the major limiting factors of biological activity in arid and semiarid ecosystems. Therefore, perennial plants have developed different ecophysiological adaptations to cope with harsh conditions. The chemical profile of the root exudates varies among plant species and this can induce variability in associated microbial populations. We examined the influence of two shrubs species, Artemisia sieberi and Noaea mucronata, on soil microbial diversity. Soil samples were collected monthly, from December 2006 to November 2007, near canopies of both shrubs (0-10-cm depth). Samples were used for abiotic tests and determination of soil bacterial diversity. No significant differences were found in the abiotic variables (soil moisture, total organic matter, and total soluble nitrogen (TSN)) between soil samples collected from under the two shrubs during the study period. No obvious differences in the Shannon-Weaver index, evenness values, or total phylogenetic distances were found for the soil microbial communities. However, detailed denaturing gradient gel electrophoresis (DGGE) clustering as well as taxonomic diversity analyses indicated clear shifts in the soil microbial community composition. These shifts were governed by seasonal variability in water availability and, significantly, by plant species type.

Solubility of 238U radionuclide from various types of soil in synthetic gastrointestinal fluids using "US in vitro" digestion method

NASA Astrophysics Data System (ADS)

Rashid, Nur Shahidah Abdul; Sarmani, Sukiman; Majid, Amran Ab.; Mohamed, Faizal; Siong, Khoo Kok

2015-04-01

238U radionuclide is a naturally occuring radioactive material that can be found in soil. In this study, the solubility of 238U radionuclide obtained from various types of soil in synthetic gastrointestinal fluids was analysed by "US P in vitro" digestion method. The synthetic gastrointestinal fluids were added to the samples with well-ordered, mixed throughly and incubated according to the human physiology digestive system. The concentration of 238U radionuclide in the solutions extracted from the soil was measured using Induced Coupling Plasma Mass Spectrometer (ICP-MS). The concentration of 238U radionuclide from the soil samples in synthetic gastrointestinal fluids showed different values due to different homogenity of soil types and chemical reaction of 238U radionuclide. In general, the solubility of 238U radionuclide in gastric fluid was higher (0.050 - 0.209 ppm) than gastrointestinal fluids (0.024 - 0.050 ppm). It could be concluded that the US P in vitro digestion method is practicle for estimating the solubility of 238U radionuclide from soil materials and could be useful for monitoring and risk assessment purposes applying to environmental, health and contaminated soil samples.

Microbial communities in carbonate rocks-from soil via groundwater to rocks.

PubMed

Meier, Aileen; Singh, Manu K; Kastner, Anne; Merten, Dirk; Büchel, Georg; Kothe, Erika

2017-09-01

Microbial communities in soil, groundwater, and rock of two sites in limestone were investigated to determine community parameters differentiating habitats in two lithostratigraphic untis. Lower Muschelkalk and Middle Muschelkalk associated soils, groundwater, and rock samples showed different, but overlapping microbial communities linked to carbon fluxes. The microbial diversities in soil were highest, groundwater revealed overlapping taxa but lower diversity, and rock samples were predominantly characterized by endospore forming bacteria and few archaea. Physiological profiles could establish a differentiation between habitats (soil, groundwater, rock). From community analyses and physiological profiles, different element cycles in limestone could be identified for the three habitats. While in soil, nitrogen cycling was identified as specific determinant, in rock methanogenesis linked carbonate rock to atmospheric methane cycles. These patterns specifically allowed for delineation of lithostratigraphic connections to physiological parameters. © 2017 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Spectroscopic analyses of soil samples outside Nile Delta of Egypt

NASA Astrophysics Data System (ADS)

Fakhry, Ahmed; Osman, Osama; Ezzat, Hend; Ibrahim, Medhat

2016-11-01

Soil in Egypt, especially around Delta is exposed to various pollutants which are affecting adversely soil fertility and stability. Humic Acids (HA) as a main part of soil organic matter (SOM) represent the heart of the interaction process of inorganic pollutants with soil. Consequently, Fourier transform infrared spectroscopy (FTIR) and Nuclear magnetic resonances (NMR) were used to characterize soil, sediment and extracted HA. Resulting data confirmed that the HA was responsible for transporting inorganic pollutants from surface to subsurface reaching the ground water, which may represent a high risk on public health. The transport process is coming as carboxyl in surface soil changed into metal carboxylate then transferred into the carboxyl in bottom soil.

76 FR 14997 - In the Matter of Entergy Nuclear Vermont Yankee, LLC and Entergy Nuclear Operations, Inc...

Federal Register 2010, 2011, 2012, 2013, 2014

2011-03-18

... teleconferences: (1) Increasing concentrations of radiocontaminants in the soil and groundwater at VY, as well as... radiological examination and soil remediation. Copies of the petitions are available for inspection at the... sampling data, hydrologic information, and analyses; conducting an onsite inspection and assessment of...

Determination of polycyclic aromatic hydrocarbons in biochar and biochar amended soil

USDA-ARS?s Scientific Manuscript database

A method for the determination of the 16 USEPA polycyclic aromatic hydrocarbons (PAHs) in biochar and soil amended with biochar was developed. Samples were Soxhlet extracted with acetone:cyclohexane 1:1, and PAHs were analysed by GC-MS after silica gel clean-up. In a comparative study based on reflu...

Heavy metals and metalloid content in vegetables and soil collected from the gardens of Zagreb, Croatia.

PubMed

Puntarić, Dinko; Vidosavljević, Domagoj; Gvozdić, Vlatka; Puntarić, Eda; Puntarić, Ida; Mayer, Dijana; Bosnir, Jasna; Lasić, Dario; Jergović, Matijana; Klarić, Ivana; Vidosavljević, Marina; Krivdić, Ivancica

2013-09-01

Aim of this study was to determine concentration of Pb, Cd, As and Hg in green leafy vegetables and soil in the urban area of Zagreb, Croatia and to determine if there is a connection between the contamination of soil and vegetables. Green leafy vegetables and soil samples were taken from the gardens located in the outskirts of the city. Concentrations of Pb, Cd, As and Hg were determined by atomic absorption spectrometry; showing that average concentrations of metals and metalloids in vegetables and in soil, regardless of the location of sampling were below the maximum allowed concentration (MAC). The analysis determined that metal concentrations in only nine vegetable samples (9%) were above maximum allowed values prescribed by national and European legislation (three with higher concentrations of Pb, one with a higher concentration of Cd and five with higher concentrations of Hg). Concentrations of contaminants present in the analysed samples, in general, are lower than the ones published in similar studies. The final distribution and concentration of contaminants in vegetables of Zagreb, besides industry and traffic, is affected by the dominant wind direction.

Analytical method for nitroaromatic explosives in radiologically contaminated soil for ISO/IEC 17025 accreditation

DOE PAGES

Boggess, Andrew; Crump, Stephen; Gregory, Clint; ...

2017-12-06

Here, unique hazards are presented in the analysis of radiologically contaminated samples. Strenuous safety and security precautions must be in place to protect the analyst, laboratory, and instrumentation used to perform analyses. A validated method has been optimized for the analysis of select nitroaromatic explosives and degradative products using gas chromatography/mass spectrometry via sonication extraction of radiologically contaminated soils, for samples requiring ISO/IEC 17025 laboratory conformance. Target analytes included 2-nitrotoluene, 4-nitrotoluene, 2,6-dinitrotoluene, and 2,4,6-trinitrotoluene, as well as the degradative product 4-amino-2,6-dinitrotoluene. Analytes were extracted from soil in methylene chloride by sonication. Administrative and engineering controls, as well as instrument automationmore » and quality control measures, were utilized to minimize potential human exposure to radiation at all times and at all stages of analysis, from receiving through disposition. Though thermal instability increased uncertainties of these selected compounds, a mean lower quantitative limit of 2.37 µg/mL and mean accuracy of 2.3% relative error and 3.1% relative standard deviation were achieved. Quadratic regression was found to be optimal for calibration of all analytes, with compounds of lower hydrophobicity displaying greater parabolic curve. Blind proficiency testing (PT) of spiked soil samples demonstrated a mean relative error of 9.8%. Matrix spiked analyses of PT samples demonstrated that 99% recovery of target analytes was achieved. To the knowledge of the authors, this represents the first safe, accurate, and reproducible quantitative method for nitroaromatic explosives in soil for specific use on radiologically contaminated samples within the constraints of a nuclear analytical lab.« less

Analytical method for nitroaromatic explosives in radiologically contaminated soil for ISO/IEC 17025 accreditation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Boggess, Andrew; Crump, Stephen; Gregory, Clint

Here, unique hazards are presented in the analysis of radiologically contaminated samples. Strenuous safety and security precautions must be in place to protect the analyst, laboratory, and instrumentation used to perform analyses. A validated method has been optimized for the analysis of select nitroaromatic explosives and degradative products using gas chromatography/mass spectrometry via sonication extraction of radiologically contaminated soils, for samples requiring ISO/IEC 17025 laboratory conformance. Target analytes included 2-nitrotoluene, 4-nitrotoluene, 2,6-dinitrotoluene, and 2,4,6-trinitrotoluene, as well as the degradative product 4-amino-2,6-dinitrotoluene. Analytes were extracted from soil in methylene chloride by sonication. Administrative and engineering controls, as well as instrument automationmore » and quality control measures, were utilized to minimize potential human exposure to radiation at all times and at all stages of analysis, from receiving through disposition. Though thermal instability increased uncertainties of these selected compounds, a mean lower quantitative limit of 2.37 µg/mL and mean accuracy of 2.3% relative error and 3.1% relative standard deviation were achieved. Quadratic regression was found to be optimal for calibration of all analytes, with compounds of lower hydrophobicity displaying greater parabolic curve. Blind proficiency testing (PT) of spiked soil samples demonstrated a mean relative error of 9.8%. Matrix spiked analyses of PT samples demonstrated that 99% recovery of target analytes was achieved. To the knowledge of the authors, this represents the first safe, accurate, and reproducible quantitative method for nitroaromatic explosives in soil for specific use on radiologically contaminated samples within the constraints of a nuclear analytical lab.« less

Bioavailability and mobility of organic contaminants in soil: new three-step ecotoxicological evaluation.

PubMed

Prokop, Zbyněk; Nečasová, Anežka; Klánová, Jana; Čupr, Pavel

2016-03-01

A novel approach was developed for rapid assessment of bioavailability and potential mobility of contaminants in soil. The response of the same test organism to the organic extract, water extract and solid phase of soil was recorded and compared. This approach was designed to give an initial estimate of the total organic toxicity (response to organic extractable fraction), as well as the mobile (response to water extract) and bioavailable fraction (response to solid phase) of soil samples. Eighteen soil samples with different levels of pollution and content of organic carbon were selected to validate the novel three-step ecotoxicological evaluation approach. All samples were chemically analysed for priority contaminants, including aromatic hydrocarbons (PAHs), polychlorinated biphenyls (PCBs), hexachlorocyclohexane (HCH) and dichlordiphenyltrichloroethane (DDT). The ecotoxicological evaluation involved determination of toxicity of the organic, mobile and bioavailable fractions of soil to the test organism, bacterium Bacillus cereus. We found a good correlation between the chemical analysis and the toxicity of organic extract. The low toxicity of water extracts indicated low water solubility, and thus, low potential mobility of toxic contaminants present in the soil samples. The toxicity of the bioavailable fraction was significantly greater than the toxicity of water-soluble (mobile) fraction of the contaminants as deduced from comparing untreated samples and water extracts. The bioavailability of the contaminants decreased with increasing concentrations of organic carbon in evaluated soil samples. In conclusion, the three-step ecotoxicological evaluation utilised in this study can give a quick insight into soil contamination in context with bioavailability and mobility of the contaminants present. This information can be useful for hazard identification and risk assessment of soil-associated contaminants. Graphical Abstract New three-step ecotoxicological evaluation by using the same organism.

Random whole metagenomic sequencing for forensic discrimination of soils.

PubMed

Khodakova, Anastasia S; Smith, Renee J; Burgoyne, Leigh; Abarno, Damien; Linacre, Adrian

2014-01-01

Here we assess the ability of random whole metagenomic sequencing approaches to discriminate between similar soils from two geographically distinct urban sites for application in forensic science. Repeat samples from two parklands in residential areas separated by approximately 3 km were collected and the DNA was extracted. Shotgun, whole genome amplification (WGA) and single arbitrarily primed DNA amplification (AP-PCR) based sequencing techniques were then used to generate soil metagenomic profiles. Full and subsampled metagenomic datasets were then annotated against M5NR/M5RNA (taxonomic classification) and SEED Subsystems (metabolic classification) databases. Further comparative analyses were performed using a number of statistical tools including: hierarchical agglomerative clustering (CLUSTER); similarity profile analysis (SIMPROF); non-metric multidimensional scaling (NMDS); and canonical analysis of principal coordinates (CAP) at all major levels of taxonomic and metabolic classification. Our data showed that shotgun and WGA-based approaches generated highly similar metagenomic profiles for the soil samples such that the soil samples could not be distinguished accurately. An AP-PCR based approach was shown to be successful at obtaining reproducible site-specific metagenomic DNA profiles, which in turn were employed for successful discrimination of visually similar soil samples collected from two different locations.

Acetate biostimulation as an effective treatment for cleaning up alkaline soil highly contaminated with Cr(VI).

PubMed

Lara, Paloma; Morett, Enrique; Juárez, Katy

2017-11-01

Stimulation of microbial reduction of Cr(VI) to the less toxic and less soluble Cr(III) through electron donor addition has been regarded as a promising approach for the remediation of chromium-contaminated soil and groundwater sites. However, each site presents different challenges; local physicochemical characteristics and indigenous microbial communities influence the effectiveness of the biostimulation processes. Here, we show microcosm assays stimulation of microbial reduction of Cr(VI) in highly alkaline and saline soil samples from a long-term contaminated site in Guanajuato, Mexico. Acetate was effective promoting anaerobic microbial reduction of 15 mM of Cr(VI) in 25 days accompanied by an increase in pH from 9 to 10. Our analyses showed the presence of Halomonas, Herbaspirillum, Nesterenkonia/Arthrobacter, and Bacillus species in the soil sample collected. Moreover, from biostimulated soil samples, it was possible to isolate Halomonas spp. strains able to grow at 32 mM of Cr(VI). Additionally, we found that polluted groundwater has bacterial species different to those found in soil samples with the ability to resist and reduce chromate using acetate and yeast extract as electron donors.

Amorphous Analogs of Martian Global Soil: Pair Distribution Function Analyses and Implications for Scattering Models of Chemin X-ray Diffraction Data

NASA Technical Reports Server (NTRS)

Achilles, C. N.; Bish, D. L.; Rampe, E. B.; Morris, R. V.

2015-01-01

Soils on Mars have been analyzed by the Mars Exploration Rovers (MER) and most recently by the Mars Science Laboratory (MSL) rover. Chemical analyses from a majority of soil samples suggest that there is a relatively uniform global soil composition across much of the planet. A soil site, Rocknest, was sampled by the MSL science payload including the CheMin X-ray diffractometer and the Alpha Particle X-ray Spectrometer (APXS). Che- Min X-ray diffraction (XRD) data revealed crystalline phases and a broad, elevated background, indicating the presence of amorphous or poorly ordered materials (Fig 1). Based on the chemical composition of the bulk soil measured by APXS and the composition of crystalline phases derived from unit-cell parameters determined with CheMin data, the percentages of crystalline and amorphous phases were calculated at 51% and 49%, respectively. Attempts to model the amorphous contribution to CheMin XRD patterns were made using amorphous standards and full-pattern fitting methods and show that the broad, elevated background region can be fitted by basaltic glass, allophane, and palagonite. However, the modeling shows only that these phases have scattering patterns similar to that for the soil, not that they represent unique solutions. Here, we use pair distribution function (PDF) analysis to determine the short-range order of amorphous analogs in martian soils and better constrain the amorphous material detected by CheMin.

The use of biogas plant fermentation residue for the stabilisation of toxic metals in agricultural soils

NASA Astrophysics Data System (ADS)

Geršl, Milan; Šotnar, Martin; Mareček, Jan; Vítěz, Tomáš; Koutný, Tomáš; Kleinová, Jana

2015-04-01

Our department has been paying attention to different methods of soil decontamination, including the in situ stabilisation. Possible reagents to control the toxic metals mobility in soils include a fermentation residue (FR) from a biogas plant. Referred to as digestate, it is a product of anaerobic decomposition taking place in such facilities. The fermentation residue is applied to soils as a fertiliser. A new way of its use is the in situ stabilisation of toxic metals in soils. Testing the stabilisation of toxic metals made use of real soil samples sourced from five agriculturally used areas of the Czech Republic with 3 soil samples taken from sites contaminated with Cu, Pb and Zn and 2 samples collected at sites of natural occurrence of Cu, Pb and Zn ores. All the samples were analysed using the sequential extraction procedure (BCR) (determine the type of Cu, Pb and Zn bonds). Stabilisation of toxic metals was tested in five soil samples by adding reagents as follows: dolomite, slaked lime, goethite, compost and fermentation residue. A single reagent was added at three different concentrations. In the wet state with the added reagents, the samples were left for seven days, shaken twice per day. After seven days, metal extraction was carried out: samples of 10 g soil were shaken for 2 h in a solution of 0.1M NH4NO3 at a 1:2.5 (g.ml-1), centrifuged for 15 min at 5,000 rpm and then filtered through PTFE 0.45 μm mesh filters. The extracts were analysed by ICP-OES. Copper The best reduction of Cu concentration in the extract was obtained at each of the tested sites by adding dolomite (10 g soil + 0.3 g dolomite). The concentration of Cu in the leachate decreased to 2.1-18.4% compare with the leachate without addition. Similar results were also shown for the addition of fermentation residue (10 g soil + 1 g FR). The Cu concentration in the leachate decreased to 16.7-26.8% compared with the leachate without addition. Lead The best results were achieved by adding slaked lime (10 g soil + 0.5 Ca(OH)2), where the concentration of Pb in the extract decreased to 0.2-8.3%. Adding dolomite (10 g soil + 0.3 g dolomite) achieved a reduction of Pb concentration to 0.4-9.1%. The addition of fermentation residue (10 g soil sample + 2 g FR) caused the concentration of Pb to decrease to 4.6-15.6%. Zinc The best reduction of Zn concentration in the extract was obtained by adding dolomite (10 g soil + 0.5 g dolomite). The concentration of Cu in the leachate decreased to 0.3-29.4%. Similar properties were obtained by adding fermentation residue (10 g soil + 2 g FR), when the Zn concentration decreased to 1.0-24.3%. The waste product of biogas plants can be used for stabilising the bonds of some toxic metals in soils while making use of its fertilising properties to improve soil quality. The research was conducted with the support of the project entitled "Postdoc contracts at MENDELU technical and ekonomical research" (CZ.1.07/2.3.00/30.0031).

Using multivariate analyses and GIS to identify pollutants and their spatial patterns in urban soils in Galway, Ireland.

PubMed

Zhang, Chaosheng

2006-08-01

Galway is a small but rapidly growing tourism city in western Ireland. To evaluate its environmental quality, a total of 166 surface soil samples (0-10 cm depth) were collected from parks and grasslands at the density of 1 sample per 0.25 km2 at the end of 2004. All samples were analysed using ICP-AES for the near-total concentrations of 26 chemical elements. Multivariate statistics and GIS techniques were applied to classify the elements and to identify elements influenced by human activities. Cluster analysis (CA) and principal component analysis (PCA) classified the elements into two groups: the first group predominantly derived from natural sources, the second being influenced by human activities. GIS mapping is a powerful tool in identifying the possible sources of pollutants. Relatively high concentrations of Cu, Pb and Zn were found in the city centre, old residential areas, and along major traffic routes, showing significant effects of traffic pollution. The element As is enriched in soils of the old built-up areas, which can be attributed to coal and peat combustion for home heating. Such significant spatial patterns of pollutants displayed by urban soils may imply potential health threat to residents of the contaminated areas of the city.

Assessment of groundwater quality by unsaturated zone study due to migration of leachate from Abloradjei waste disposal site, Ghana

NASA Astrophysics Data System (ADS)

Egbi, Courage Davidson; Akiti, Tetteh Thomas; Osae, Shiloh; Dampare, Samuel Boakye; Abass, Gibrilla; Adomako, Dickson

2017-05-01

Leachate generated by open solid waste disposal sites contains substances likely to contaminate groundwater. The impact of potential contaminants migrating from leachate on groundwater can be quantified by monitoring their concentration and soil properties at specific points in the unsaturated zone. In this study, physical and chemical analyses were carried out on leachate, soil and water samples within the vicinity of the municipal solid waste disposal site at Abloradjei, a suburb of Accra, Ghana. The area has seen a massive increase in population and the residents depend on groundwater as the main source of water supply. Results obtained indicate alkaline pH for leachate and acidic conditions for unsaturated zone water. High EC values were recorded for leachate and unsaturated zone water. Major ions (Ca2+, Na+, Mg2+, K+, NO3 -, SO4 2-, Cl-, PO4 3- were analysed in leachate, unsaturated zone water, soil solution and groundwater while trace metals (Al, Fe, Cu, Zn, Pb) were analysed in both soil and extracted soil solution. Concentrations of major ions were high in all samples indicating possible anthropogenic origin. Mean % gravel, % sand, % clay, bulk density, volumetric water content and porosity were 28.8, 63.93, 6.6, 1 g cm-3, 35 and 62.7 %, respectively. Distribution of trace elements showed Kd variation of Al > Cu > Fe > Pb > Zn in the order of sequential increasing solubility. It was observed that the quality of groundwater is not suitable for drinking.

Arsenic in rice agrosystems (water, soil and rice plants) in Guayas and Los Ríos provinces, Ecuador.

PubMed

Otero, X L; Tierra, W; Atiaga, O; Guanoluisa, D; Nunes, L M; Ferreira, T O; Ruales, J

2016-12-15

Geogenic arsenic (As) can accumulate and reach high concentrations in rice grains, thus representing a potential threat to human health. Ecuador is one of the main consumers of rice in South America. However, there is no information available about the concentrations of As in rice agrosystems, although some water bodies are known to contain high levels of the element. We carried out extensive sampling of water, soil, rice plants and commercial rice (obtained from local markets). Water samples were analysed to determine physico-chemical properties and concentrations of dissolved arsenic. Soil samples were analysed to determine total organic C, texture, total Fe and amorphous Fe oxyhydroxides (Fe Ox ), total arsenic (tAs) and the bioavailable fraction (As Me ). The different plant parts were analysed separately to determine total (tAs), inorganic (iAs) and organic arsenic (oAs). Low concentrations of arsenic were found in samples of water (generally <10μgl -1 ) and soil (4.48±3mgkg -1 ). The tAs in the rice grains was within the usual range (0.042-0.125mgkg -1 dry weight, d.w.) and was significantly lower than in leaves (0.123-0.286mgkg -1 d.w.) and stems (0.091-0.201mgkg -1 d.w.). The Fe Ox and tAs and also As Me in flood water were negatively correlated with tAs in the plants. However, the concentrations of As in stems and leaves were linearly correlated with tAs in the soil and flood water. The relationship between tAs and arsenic in the grain fitted a logarithmic function, as did that between tAs in the grain and the stem. The findings seem to indicate that high concentrations of arsenic in the environment (soil or water) or in the rice stem do not necessarily imply accumulation of the element in the grain. The iAs form was dominant (>80%) in all parts of the rice plants. Copyright © 2016 Elsevier B.V. All rights reserved.

Gemas: Geochemical mapping of the agricultural and grasing land soils of Europe

NASA Astrophysics Data System (ADS)

Reimann, Clemens; Fabian, Karl; Birke, Manfred; Demetriades, Alecos; Matschullat, Jörg; Gemas Project Team

2017-04-01

Geochemical Mapping of Agricultural and grazing land Soil (GEMAS) is a cooperative project between the Geochemistry Expert Group of EuroGeoSurveys and Eurometaux. During 2008 and until early 2009, a total of 2108 samples of agricultural (ploughed land, 0-20 cm, Ap-samples) and 2023 samples of grazing land (0-10 cm, Gr samples)) soil were collected at a density of 1 site/2500 km2 each from 33 European countries, covering an area of 5,600,000 km2. All samples were analysed for 52 chemical elements following an aqua regia extraction, 42 elements by XRF (total), and soil properties, like CEC, TOC, pH (CaCl2), following tight external quality control procedures. In addition, the Ap soil samples were analysed for 57 elements in a mobile metal ion (MMI®) extraction, Pb isotopes, magnetic susceptibility and total C, N and S. The results demonstrate that robust geochemical maps of Europe can be constructed based on low density sampling, the two independent sample materials, Ap and Gr, show very comparable distribution patterns across Europe. At the European scale, element distribution patterns are governed by natural processes, most often a combination of geology and climate. The geochemical maps reflect most of the known metal mining districts in Europe. In addition, a number of new anomalies emerge that may indicate mineral potential. The size of some anomalies is such that they can only be detected when mapping at the continental scale. For some elements completely new geological settings are detected. An anthropogenic impact at a much more local scale is discernible in the immediate vicinity of some major European cities (e.g., London, Paris) and some metal smelters. The impact of agriculture is visible for Cu (vineyard soils) and for some further elements only in the mobile metal ion (MMI) extraction. For several trace elements deficiency issues are a larger threat to plant, animal and finally human health at the European scale than toxicity. Taking the famous step back to see the whole picture at the continental scale and to understand the relative importance of the processes leading to element enrichment/depletion in soil may hold unexpected promise for mineral exploration as well as for environmental sciences.

Long-term fertilization alters chemically-separated soil organic carbon pools: Based on stable C isotope analyses

NASA Astrophysics Data System (ADS)

Dou, Xiaolin; He, Ping; Cheng, Xiaoli; Zhou, Wei

2016-01-01

Quantification of dynamics of soil organic carbon (SOC) pools under the influence of long-term fertilization is essential for predicting carbon (C) sequestration. We combined soil chemical fractionation with stable C isotope analyses to investigate the C dynamics of the various SOC pools after 25 years of fertilization. Five types of soil samples (0-20, 20-40 cm) including the initial level (CK) and four fertilization treatments (inorganic nitrogen fertilizer, IN; balanced inorganic fertilizer, NPK; inorganic fertilizer plus farmyard manure, MNPK; inorganic fertilizer plus corn straw residue, SNPK) were separated into recalcitrant and labile fractions, and the fractions were analysed for C content, C:N ratios, δ13C values, soil C and N recalcitrance indexes (RIC and RIN). Chemical fractionation showed long-term MNPK fertilization strongly increased the SOC storage in both soil layers (0-20 cm = 1492.4 gC m2 and 20-40 cm = 1770.6 gC m2) because of enhanced recalcitrant C (RC) and labile C (LC). The 25 years of inorganic fertilizer treatment did not increase the SOC storage mainly because of the offsetting effects of enhanced RC and decreased LC, whereas no clear SOC increases under the SNPK fertilization resulted from the fast decay rates of soil C.

Long-term fertilization alters chemically-separated soil organic carbon pools: Based on stable C isotope analyses.

PubMed

Dou, Xiaolin; He, Ping; Cheng, Xiaoli; Zhou, Wei

2016-01-11

Quantification of dynamics of soil organic carbon (SOC) pools under the influence of long-term fertilization is essential for predicting carbon (C) sequestration. We combined soil chemical fractionation with stable C isotope analyses to investigate the C dynamics of the various SOC pools after 25 years of fertilization. Five types of soil samples (0-20, 20-40 cm) including the initial level (CK) and four fertilization treatments (inorganic nitrogen fertilizer, IN; balanced inorganic fertilizer, NPK; inorganic fertilizer plus farmyard manure, MNPK; inorganic fertilizer plus corn straw residue, SNPK) were separated into recalcitrant and labile fractions, and the fractions were analysed for C content, C:N ratios, δ(13)C values, soil C and N recalcitrance indexes (RIC and RIN). Chemical fractionation showed long-term MNPK fertilization strongly increased the SOC storage in both soil layers (0-20 cm = 1492.4 gC m(2) and 20-40 cm = 1770.6 gC m(2)) because of enhanced recalcitrant C (RC) and labile C (LC). The 25 years of inorganic fertilizer treatment did not increase the SOC storage mainly because of the offsetting effects of enhanced RC and decreased LC, whereas no clear SOC increases under the SNPK fertilization resulted from the fast decay rates of soil C.

Samples from Martian craters: Origin of the Martian soil by hydrothermal alteration of impact melt deposits and atmospheric interactions with ejecta during crater formation

NASA Technical Reports Server (NTRS)

Newsom, Horton E.

1988-01-01

The origin of the Martian soil is an important question for understanding weathering processes on the Martian surface, and also for understanding the global geochemistry of Mars. Chemical analyses of the soil will provide an opportunity to examine what may be a crustal average, as studies of loess on the Earth have demonstrated. In this regard the origin of the Martian soil is also important for understanding the chemical fractionations that have affected the composition of the soil. Several processes that are likely to contribute to the Martian soil are examined.

The influence of chloride deicers on mineral nutrition and the health status of roadside trees in the city of Kielce, Poland.

PubMed

Gałuszka, Agnieszka; Migaszewski, Zdzisław M; Podlaski, Rafał; Dołęgowska, Sabina; Michalik, Artur

2011-05-01

Application of chemical road deicers has a negative impact on roadside vegetation. Every year, the trees in cities suffer from direct and indirect effects of salt application for winter road maintenance. To elucidate this problem in the city of Kielce, the chemistry of snow, soil, tree bark, and leaf samples has been investigated together with an assessment of the health status of the trees. Twelve investigation sites were selected along the roads with different traffic intensity. Snow samples were collected twice during the winter and analyzed for pH, EC, Na(+), Ca(2+), Mg(2+), and Cl(-). In soil (collected from two depth intervals), tree bark, and leaf samples, the concentrations of B, Ca, Fe, K, Mg, Mn, N, Na, P, S, and Zn were determined. The contents of total organic carbon (TOC) in soils, as well as the pH of soil and tree bark samples were also measured. Negative symptoms revealed by roadside trees included the loss of assimilative apparatus and decreased vitality. The results of chemical analyses indicated that the snowmelt might be a substantial source of chloride ions and alkalizing substances that influenced higher pH of soils. The soil samples displayed elevated concentrations of S and Zn and lower than typical for soil contents of B, Mg, and TOC. The pH of alkaline soils favored greater bioavailability of B and reduced bioavailability of Na and Zn by the trees examined.

Relevant magnetic and soil parameters as potential indicators of soil conservation status of Mediterranean agroecosystems

NASA Astrophysics Data System (ADS)

Quijano, Laura; Chaparro, Marcos A. E.; Marié, Débora C.; Gaspar, Leticia; Navas, Ana

2014-09-01

The main sources of magnetic minerals in soils unaffected by anthropogenic pollution are iron oxides and hydroxides derived from parent materials through soil formation processes. Soil magnetic minerals can be used as indicators of environmental factors including soil forming processes, degree of pedogenesis, weathering processes and biological activities. In this study measurements of magnetic susceptibility are used to detect the presence and the concentration of soil magnetic minerals in topsoil and bulk samples in a small cultivated field, which forms a hydrological unit that can be considered to be representative of the rainfed agroecosystems of Mediterranean mountain environments. Additional magnetic studies such as isothermal remanent magnetization (IRM), anhysteretic remanent magnetization (ARM) and thermomagnetic measurements are used to identify and characterize the magnetic mineralogy of soil minerals. The objectives were to analyse the spatial variability of the magnetic parameters to assess whether topographic factors, soil redistribution processes, and soil properties such as soil texture, organic matter and carbonate contents analysed in this study, are related to the spatial distribution pattern of magnetic properties. The medians of mass specific magnetic susceptibility at low frequency (χlf) were 36.0 and 31.1 × 10-8 m3 kg-1 in bulk and topsoil samples respectively. High correlation coefficients were found between the χlf in topsoil and bulk core samples (r = 0.951, p < 0.01). In addition, volumetric magnetic susceptibility was measured in situ in the field (κis) and values varied from 13.3 to 64.0 × 10-5 SI. High correlation coefficients were found between χlf in topsoil measured in the laboratory and volumetric magnetic susceptibility field measurements (r = 0.894, p < 0.01). The results obtained from magnetic studies such as IRM, ARM and thermomagnetic measurements show the presence of magnetite, which is the predominant magnetic carrier, and hematite. The predominance of superparamagnetic minerals in upper soil layers suggests enrichment in pedogenic minerals. The finer soil particles, the organic matter content and the magnetic susceptibility values are statistically correlated and their spatial variability is related to similar physical processes. Runoff redistributes soil components including magnetic minerals and exports fine particles out the field. This research contributed to further knowledge on the application of soil magnetic properties to derive useful information on soil processes in Mediterranean cultivated soils.

Measuring soil organic matter turn over and carbon stabilisation in pasture soils using 13C enrichment methodology.

NASA Astrophysics Data System (ADS)

Robinson, J. M.; Barker, S.; Schipper, L. A.

2017-12-01

Carbon storage in soil is a balance between photosynthesis and respiration, however, not all C compounds decompose equally in soil. Soil C consists of several fractions of C ranging from, accessible C (rapidly cycling) to stored or protected C (slow cycling). The key to increasing C storage is through the transfer of soil C from this accessible fraction, where it can be easily lost through microbial degradation, into the more stable fraction. With the increasing use of isotope enrichment techniques, 13C may be used to trace the movement of newly incorporated carbon in soil and examine how land management practises affect carbon storage. A laboratory method was developed to rapidly analyse soil respired CO2 for δ13C to determine the temperature sensitivity of newly incorporated 13C enriched carbon. A Horotiu silt loam (2 mm sieved, 60% MWHC) was mixed with 13C enriched ryegrass/clover plant matter in Hungate tubes and incubated for 5 hours at 20 temperatures( 4 - 50 °C) using a temperature gradient method (Robinson J. M., et al, (2017) Biogeochemistry, 13, 101-112). The respired CO2 was analysed using a modified Los Gatos, Off-axis ICOS carbon dioxide analyser. This method was able to analyse the δ13C signature of respired CO2 as long as a minimum concentration of CO2 was produced per tube. Further analysis used a two-component mixing model to separate the CO2 into source components to determine the contribution of added C and soil to total respiration. Preliminary data showed the decomposition of the two sources of C were both temperature dependant. Overall this method is a relatively quick and easy way to analyse δ13C of respired soil CO2 samples, and will allow for the testing of the effects of multiple variables on the decomposition of carbon fractions in future use.

Response of soil bacterial communities to lead and zinc pollution revealed by Illumina MiSeq sequencing investigation.

PubMed

Xu, Xihui; Zhang, Zhou; Hu, Shunli; Ruan, Zhepu; Jiang, Jiandong; Chen, Chen; Shen, Zhenguo

2017-01-01

Soil provides a critical environment for microbial community development. However, microorganisms may be sensitive to substances such as heavy metals (HMs), which are common soil contaminants. This study investigated bacterial communities using 16S ribosomal RNA (rRNA) gene fragment sequencing in geographic regions with and without HM pollution to elucidate the effects of soil properties and HMs on bacterial communities. No obvious changes in the richness or diversity of bacterial communities were observed between samples from mining and control areas. Significant differences in bacterial richness and diversity were detected between samples from different geographic regions, indicating that the basic soil characteristics were the most important factors affecting bacterial communities other than HMs. However, the abundances of several phyla and genera differed significantly between mining and control samples, suggesting that Zn and Pb pollution may impact the soil bacterial community composition. Moreover, regression analyses showed that the relative abundances of these phyla and genera were correlated significantly with the soil-available Zn and Pb contents. Redundancy analysis indicated that the soil K, ammoniacal nitrogen (NH 4 + -N), total Cu, and available Zn and Cu contents were the most important factors. Our results not only suggested that the soil bacteria were sensitive to HM stresses but also indicated that other soil properties may affect soil microorganisms to a greater extent.

Estimating Children’s Soil/Dust Ingestion Rates through Retrospective Analyses of Blood Lead Biomonitoring from the Bunker Hill Superfund Site in Idaho

PubMed Central

von Lindern, Ian; Spalinger, Susan; Stifelman, Marc L.; Stanek, Lindsay Wichers; Bartrem, Casey

2016-01-01

Background: Soil/dust ingestion rates are important variables in assessing children’s health risks in contaminated environments. Current estimates are based largely on soil tracer methodology, which is limited by analytical uncertainty, small sample size, and short study duration. Objectives: The objective was to estimate site-specific soil/dust ingestion rates through reevaluation of the lead absorption dose–response relationship using new bioavailability data from the Bunker Hill Mining and Metallurgical Complex Superfund Site (BHSS) in Idaho, USA. Methods: The U.S. Environmental Protection Agency (EPA) in vitro bioavailability methodology was applied to archived BHSS soil and dust samples. Using age-specific biokinetic slope factors, we related bioavailable lead from these sources to children’s blood lead levels (BLLs) monitored during cleanup from 1988 through 2002. Quantitative regression analyses and exposure assessment guidance were used to develop candidate soil/dust source partition scenarios estimating lead intake, allowing estimation of age-specific soil/dust ingestion rates. These ingestion rate and bioavailability estimates were simultaneously applied to the U.S. EPA Integrated Exposure Uptake Biokinetic Model for Lead in Children to determine those combinations best approximating observed BLLs. Results: Absolute soil and house dust bioavailability averaged 33% (SD ± 4%) and 28% (SD ± 6%), respectively. Estimated BHSS age-specific soil/dust ingestion rates are 86–94 mg/day for 6-month- to 2-year-old children and 51–67 mg/day for 2- to 9-year-old children. Conclusions: Soil/dust ingestion rate estimates for 1- to 9-year-old children at the BHSS are lower than those commonly used in human health risk assessment. A substantial component of children’s exposure comes from sources beyond the immediate home environment. Citation: von Lindern I, Spalinger S, Stifelman ML, Stanek LW, Bartrem C. 2016. Estimating children’s soil/dust ingestion rates through retrospective analyses of blood lead biomonitoring from the Bunker Hill Superfund Site in Idaho. Environ Health Perspect 124:1462–1470; http://dx.doi.org/10.1289/ehp.1510144 PMID:26745545

Properties of Soil Pore Space Regulate Pathways of Plant Residue Decomposition and Community Structure of Associated Bacteria

PubMed Central

Negassa, Wakene C.; Guber, Andrey K.; Kravchenko, Alexandra N.; Marsh, Terence L.; Hildebrandt, Britton; Rivers, Mark L.

2015-01-01

Physical protection of soil carbon (C) is one of the important components of C storage. However, its exact mechanisms are still not sufficiently lucid. The goal of this study was to explore the influence of soil structure, that is, soil pore spatial arrangements, with and without presence of plant residue on (i) decomposition of added plant residue, (ii) CO2 emission from soil, and (iii) structure of soil bacterial communities. The study consisted of several soil incubation experiments with samples of contrasting pore characteristics with/without plant residue, accompanied by X-ray micro-tomographic analyses of soil pores and by microbial community analysis of amplified 16S–18S rRNA genes via pyrosequencing. We observed that in the samples with substantial presence of air-filled well-connected large (>30 µm) pores, 75–80% of the added plant residue was decomposed, cumulative CO2 emission constituted 1,200 µm C g-1 soil, and movement of C from decomposing plant residue into adjacent soil was insignificant. In the samples with greater abundance of water-filled small pores, 60% of the added plant residue was decomposed, cumulative CO2 emission constituted 2,000 µm C g-1 soil, and the movement of residue C into adjacent soil was substantial. In the absence of plant residue the influence of pore characteristics on CO2 emission, that is on decomposition of the native soil organic C, was negligible. The microbial communities on the plant residue in the samples with large pores had more microbial groups known to be cellulose decomposers, that is, Bacteroidetes, Proteobacteria, Actinobacteria, and Firmicutes, while a number of oligotrophic Acidobacteria groups were more abundant on the plant residue from the samples with small pores. This study provides the first experimental evidence that characteristics of soil pores and their air/water flow status determine the phylogenetic composition of the local microbial community and directions and magnitudes of soil C decomposition processes. PMID:25909444

Properties of soil pore space regulate pathways of plant residue decomposition and community structure of associated bacteria

DOE PAGES

Negassa, Wakene C.; Guber, Andrey K.; Kravchenko, Alexandra N.; ...

2015-07-01

Physical protection of soil carbon (C) is one of the important components of C storage. However, its exact mechanisms are still not sufficiently lucid. The goal of this study was to explore the influence of soil structure, that is, soil pore spatial arrangements, with and without presence of plant residue on (i) decomposition of added plant residue, (ii) CO₂ emission from soil, and (iii) structure of soil bacterial communities. The study consisted of several soil incubation experiments with samples of contrasting pore characteristics with/without plant residue, accompanied by X-ray micro-tomographic analyses of soil pores and by microbial community analysis ofmore » amplified 16S–18S rRNA genes via pyrosequencing. We observed that in the samples with substantial presence of air-filled well-connected large (>30 µm) pores, 75–80% of the added plant residue was decomposed, cumulative CO₂ emission constituted 1,200 µm C g⁻¹ soil, and movement of C from decomposing plant residue into adjacent soil was insignificant. In the samples with greater abundance of water-filled small pores, 60% of the added plant residue was decomposed, cumulative CO₂ emission constituted 2,000 µm C g⁻¹ soil, and the movement of residue C into adjacent soil was substantial. In the absence of plant residue the influence of pore characteristics on CO₂ emission, that is on decomposition of the native soil organic C, was negligible. The microbial communities on the plant residue in the samples with large pores had more microbial groups known to be cellulose decomposers, that is, Bacteroidetes, Proteobacteria, Actinobacteria, and Firmicutes, while a number of oligotrophic Acidobacteria groups were more abundant on the plant residue from the samples with small pores. This study provides the first experimental evidence that characteristics of soil pores and their air/water flow status determine the phylogenetic composition of the local microbial community and directions and magnitudes of soil C decomposition processes.« less

Properties of soil pore space regulate pathways of plant residue decomposition and community structure of associated bacteria.

PubMed

Negassa, Wakene C; Guber, Andrey K; Kravchenko, Alexandra N; Marsh, Terence L; Hildebrandt, Britton; Rivers, Mark L

2015-01-01

Physical protection of soil carbon (C) is one of the important components of C storage. However, its exact mechanisms are still not sufficiently lucid. The goal of this study was to explore the influence of soil structure, that is, soil pore spatial arrangements, with and without presence of plant residue on (i) decomposition of added plant residue, (ii) CO2 emission from soil, and (iii) structure of soil bacterial communities. The study consisted of several soil incubation experiments with samples of contrasting pore characteristics with/without plant residue, accompanied by X-ray micro-tomographic analyses of soil pores and by microbial community analysis of amplified 16S-18S rRNA genes via pyrosequencing. We observed that in the samples with substantial presence of air-filled well-connected large (>30 µm) pores, 75-80% of the added plant residue was decomposed, cumulative CO2 emission constituted 1,200 µm C g(-1) soil, and movement of C from decomposing plant residue into adjacent soil was insignificant. In the samples with greater abundance of water-filled small pores, 60% of the added plant residue was decomposed, cumulative CO2 emission constituted 2,000 µm C g(-1) soil, and the movement of residue C into adjacent soil was substantial. In the absence of plant residue the influence of pore characteristics on CO2 emission, that is on decomposition of the native soil organic C, was negligible. The microbial communities on the plant residue in the samples with large pores had more microbial groups known to be cellulose decomposers, that is, Bacteroidetes, Proteobacteria, Actinobacteria, and Firmicutes, while a number of oligotrophic Acidobacteria groups were more abundant on the plant residue from the samples with small pores. This study provides the first experimental evidence that characteristics of soil pores and their air/water flow status determine the phylogenetic composition of the local microbial community and directions and magnitudes of soil C decomposition processes.

Properties of soil pore space regulate pathways of plant residue decomposition and community structure of associated bacteria

DOE Office of Scientific and Technical Information (OSTI.GOV)

Negassa, Wakene C.; Guber, Andrey K.; Kravchenko, Alexandra N.

Physical protection of soil carbon (C) is one of the important components of C storage. However, its exact mechanisms are still not sufficiently lucid. The goal of this study was to explore the influence of soil structure, that is, soil pore spatial arrangements, with and without presence of plant residue on (i) decomposition of added plant residue, (ii) CO₂ emission from soil, and (iii) structure of soil bacterial communities. The study consisted of several soil incubation experiments with samples of contrasting pore characteristics with/without plant residue, accompanied by X-ray micro-tomographic analyses of soil pores and by microbial community analysis ofmore » amplified 16S–18S rRNA genes via pyrosequencing. We observed that in the samples with substantial presence of air-filled well-connected large (>30 µm) pores, 75–80% of the added plant residue was decomposed, cumulative CO₂ emission constituted 1,200 µm C g⁻¹ soil, and movement of C from decomposing plant residue into adjacent soil was insignificant. In the samples with greater abundance of water-filled small pores, 60% of the added plant residue was decomposed, cumulative CO₂ emission constituted 2,000 µm C g⁻¹ soil, and the movement of residue C into adjacent soil was substantial. In the absence of plant residue the influence of pore characteristics on CO₂ emission, that is on decomposition of the native soil organic C, was negligible. The microbial communities on the plant residue in the samples with large pores had more microbial groups known to be cellulose decomposers, that is, Bacteroidetes, Proteobacteria, Actinobacteria, and Firmicutes, while a number of oligotrophic Acidobacteria groups were more abundant on the plant residue from the samples with small pores. This study provides the first experimental evidence that characteristics of soil pores and their air/water flow status determine the phylogenetic composition of the local microbial community and directions and magnitudes of soil C decomposition processes.« less

The seed bank longevity index revisited: limited reliability evident from a burial experiment and database analyses.

PubMed

Saatkamp, Arne; Affre, Laurence; Dutoit, Thierry; Poschlod, Peter

2009-09-01

Seed survival in the soil contributes to population persistence and community diversity, creating a need for reliable measures of soil seed bank persistence. Several methods estimate soil seed bank persistence, most of which count seedlings emerging from soil samples. Seasonality, depth distribution and presence (or absence) in vegetation are then used to classify a species' soil seed bank into persistent or transient, often synthesized into a longevity index. This study aims to determine if counts of seedlings from soil samples yield reliable seed bank persistence estimates and if this is correlated to seed production. Seeds of 38 annual weeds taken from arable fields were buried in the field and their viability tested by germination and tetrazolium tests at 6 month intervals for 2.5 years. This direct measure of soil seed survival was compared with indirect estimates from the literature, which use seedling emergence from soil samples to determine seed bank persistence. Published databases were used to explore the generality of the influence of reproductive capacity on seed bank persistence estimates from seedling emergence data. There was no relationship between a species' soil seed survival in the burial experiment and its seed bank persistence estimate from published data using seedling emergence from soil samples. The analysis of complementary data from published databases revealed that while seed bank persistence estimates based on seedling emergence from soil samples are generally correlated with seed production, estimates of seed banks from burial experiments are not. The results can be explained in terms of the seed size-seed number trade-off, which suggests that the higher number of smaller seeds is compensated after germination. Soil seed bank persistence estimates correlated to seed production are therefore not useful for studies on population persistence or community diversity. Confusion of soil seed survival and seed production can be avoided by separate use of soil seed abundance and experimental soil seed survival.

Development of a standard soil-to-skin adherence probability density function for use in Monte Carlo analyses of dermal exposure.

PubMed

Finley, B L; Scott, P K; Mayhall, D A

1994-08-01

It has recently been suggested that "standard" data distributions for key exposure variables should be developed wherever appropriate for use in probabilistic or "Monte Carlo" exposure analyses. Soil-on-skin adherence estimates represent an ideal candidate for development of a standard data distribution: There are several readily available studies which offer a consistent pattern of reported results, and more importantly, soil adherence to skin is likely to vary little from site-to-site. In this paper, we thoroughly review each of the published soil adherence studies with respect to study design, sampling, and analytical methods, and level of confidence in the reported results. Based on these studies, probability density functions (PDF) of soil adherence values were examined for different age groups and different sampling techniques. The soil adherence PDF developed from adult data was found to resemble closely the soil adherence PDF based on child data in terms of both central tendency (mean = 0.49 and 0.63 mg-soil/cm2-skin, respectively) and 95th percentile values (1.6 and 2.4 mg-soil/cm2-skin, respectively). Accordingly, a single, "standard" PDF is presented based on all data collected for all age groups. This standard PDF is lognormally distributed; the arithmetic mean and standard deviation are 0.52 +/- 0.9 mg-soil/cm2-skin. Since our review of the literature indicates that soil adherence under environmental conditions will be minimally influenced by age, sex, soil type, or particle size, this PDF should be considered applicable to all settings. The 50th and 95th percentile values of the standard PDF (0.25 and 1.7 mg-soil/cm2-skin, respectively) are very similar to recent U.S. EPA estimates of "average" and "upper-bound" soil adherence (0.2 and 1.0 mg-soil/cm2-skin, respectively).

Hydrologic and water-quality data for U.S. Coast Guard Support Center Kodiak, Alaska, 1987-89

USGS Publications Warehouse

Glass, R.L.

1996-01-01

Hydrologic and water-quality data were collected at the U.S. Coast Guard Support Center Kodiak on Kodiak Island, Alaska, to determine regional ground-water conditions and if contamination of soils, ground water, or surface water has occurred. Eighteen areas of possible contamination were identified. Ground-water levels, surface- water stages, surface-water discharges, and results of field and laboratory analyses of soil and water samples are presented in tabular form. Many quality-assurance samples had detectable concentrations of methylene chloride and 1,2-dichloroethane, which may be due to sampling or laboratory contamination. Concentrations were as great as 5.9 micrograms per liter for methylene chloride and 2.6 micrograms per liter for 1,2-dichloroethane. Excluding 1,2-dichloroethane, most soil, ground-water, and surface-water samples contained no detectable concentrations of the organic constituents that were analyzed. Chemical analyses were performed on two lake-bed-material samples and more than 100 soil samples. The median lead concentration was 9.8 milligrams per kilogram. Concentrations of tetrachloroethene were as great as 1.1 milligram per kilogram in soils near a laundry. Water samples were collected from 101 wells. The maximum benzene concentration detected in ground water was 78 micrograms per liter from a well at the air station near a site where aviation fuel was spilled. Wells near a laundry yielded water having concentrations of tetrachloroethene as great as 3,000 micrograms per liter, and vinyl chloride as great as 440 micrograms per liter. A well in a former aviation gasoline storage area yielded water with a concentration of trichloroethene as great as 66 micrograms per liter. Water samples were collected from 59 sites on streams, lakes, or ponds. Surface-water samples had much lower concen- trations of organic compounds; the highest concentration of benzene was 2.2 micrograms per liter in a stream near a former aviation-fuel storage area and the maximum vinyl chloride concentration was 15 micrograms per liter in a stream near a former landfill. Tetrachloroethene and trichloroethene were not detected in any surface-water samples.

Influence of Soil Properties on Soldierless Termite Distribution.

PubMed

Bourguignon, Thomas; Drouet, Thomas; Šobotník, Jan; Hanus, Robert; Roisin, Yves

2015-01-01

In tropical rainforests, termites constitute an important part of the soil fauna biomass, and as for other soil arthropods, variations in soil composition create opportunities for niche partitioning. The aim of this study was twofold: first, we tested whether soil-feeding termite species differ in the foraging substrate; second, we investigated whether soil-feeding termites select their foraging sites to enhance nutrients intake. To do so, we collected termites and analysed the composition and structure of their feeding substrates. Although Anoplotermes-group members are all considered soil-feeders, our results show that some species specifically feed on abandoned termite nests and very rotten wood, and that this substrate selection is correlated with previous stable isotope analyses, suggesting that one component of niche differentiation among species is substrate selection. Our results show that the composition and structure of bare soils on which different termite species foraged do not differ, suggesting that there is no species specialization for a particular type of bare soil. Finally, the bare soil on which termites forage does not differ from random soil samples. Overall, our results suggest that few species of the Anoplotermes-group are specialized toward substrates rich in organic matter, but that the vast majority forage on soil independently of its structural and chemical composition, being ecologically equivalent for this factor.

Soil-based treatment of partially treated liquid swine manure.

PubMed

Yang, H; Xiao, J; El-Din, M Gamal; Buchanan, I D; Bromley, D; Ikehata, K

2007-01-01

A soil-column system was tested for the removal of soluble organics and nutrients from partially treated liquid swine manure. The liquid manure was applied to the 900 mm deep (300 mm of local topsoil and 600 mm of local subsoil) soil columns continuously for an eight-week period, and leachate as well as soil samples were analysed. An effective liquid manure application rate of 17 mm d(-1) was determined based on a preliminary liquid manure soil-based treatment experiment. It was found that more than 90% of five-day biochemical oxygen demand, chemical oxygen demand, total Kjeldahl and ammonia nitrogen, and total phosphorus could be effectively removed from the liquid manure by the soil system. Nitrogen contents accumulated in the soil matrix mostly within the 0 to 300 mm depth, while no significant increase was observed in sub soils. Soil analyses indicated the occurrence of nitrification and denitrification in the soil columns. Nitrogen balance showed that about 42% of the applied nitrogen was lost from the system during the liquid manure soil-based treatment experiment, suggesting the emission of ammonia and other gaseous nitrogen generated through nitrification and denitrification. The leachate of the soil treatment system was used to irrigate Bermuda grass. No negative effect of leachate was observed on the plant growth.

Soil bacterial community and functional shifts in response to altered snowpack in moist acidic tundra of northern Alaska

NASA Astrophysics Data System (ADS)

Ricketts, Michael P.; Poretsky, Rachel S.; Welker, Jeffrey M.; Gonzalez-Meler, Miquel A.

2016-09-01

Soil microbial communities play a central role in the cycling of carbon (C) in Arctic tundra ecosystems, which contain a large portion of the global C pool. Climate change predictions for Arctic regions include increased temperature and precipitation (i.e. more snow), resulting in increased winter soil insulation, increased soil temperature and moisture, and shifting plant community composition. We utilized an 18-year snow fence study site designed to examine the effects of increased winter precipitation on Arctic tundra soil bacterial communities within the context of expected ecosystem response to climate change. Soil was collected from three pre-established treatment zones representing varying degrees of snow accumulation, where deep snow ˜ 100 % and intermediate snow ˜ 50 % increased snowpack relative to the control, and low snow ˜ 25 % decreased snowpack relative to the control. Soil physical properties (temperature, moisture, active layer thaw depth) were measured, and samples were analysed for C concentration, nitrogen (N) concentration, and pH. Soil microbial community DNA was extracted and the 16S rRNA gene was sequenced to reveal phylogenetic community differences between samples and determine how soil bacterial communities might respond (structurally and functionally) to changes in winter precipitation and soil chemistry. We analysed relative abundance changes of the six most abundant phyla (ranging from 82 to 96 % of total detected phyla per sample) and found four (Acidobacteria, Actinobacteria, Verrucomicrobia, and Chloroflexi) responded to deepened snow. All six phyla correlated with at least one of the soil chemical properties (% C, % N, C : N, pH); however, a single predictor was not identified, suggesting that each bacterial phylum responds differently to soil characteristics. Overall, bacterial community structure (beta diversity) was found to be associated with snow accumulation treatment and all soil chemical properties. Bacterial functional potential was inferred using ancestral state reconstruction to approximate functional gene abundance, revealing a decreased abundance of genes required for soil organic matter (SOM) decomposition in the organic layers of the deep snow accumulation zones. These results suggest that predicted climate change scenarios may result in altered soil bacterial community structure and function, and indicate a reduction in decomposition potential, alleviated temperature limitations on extracellular enzymatic efficiency, or both. The fate of stored C in Arctic soils ultimately depends on the balance between these mechanisms.

Assessment of airborne heavy metal pollution in soil and lichen in the Meric-Ergene Basin, Turkey.

PubMed

Hanedar, Asude

2015-01-01

In the present study, accumulations of airborne heavy metals in lichen and soil samples were determined on the basis of pollutant source groups by conducting Zinc (Zn), Lead (Pb), Iron (Fe), Copper (Cu), Chromium (Cr), Cadmium (Cd), Arsenic (As), Cobalt (Co) and Manganese (Mn) analyses on a total of 48 samples collected in the periods of May 2014 and August 2014 from 12 sampling points in a heavily industrialized area, a mixed industrial and residential area, an agricultural area and a background area in the Meric-Ergene Basin, and pH and total organic carbon determination was carried out on soil samples. With the obtained data, heavy metal levels were statistically assessed in detail by being associated with each other and with their probable sources; the accumulations found in soil and lichen samples were compared and spatial variances were set forth. Based on the results, it was observed that heavy metal pollution is at high levels particularly in industrialized areas, and that the differences between the cleanest and most polluted levels determined from soil samples for As, Cr, Cd and Pb reach 10 folds. The highest levels of all heavy metals were determined in both the soil and lichen samples collected from the areas in the south-east part of the region, where industrial activities and particularly leather and chemical industries are concentrated. With the comparison of the indication properties of soil and lichen, it was determined that significant and comparable results can be observed in both matrices.

Effects of fire on organic matter content and aggregate stability of soils in South of Spain.

NASA Astrophysics Data System (ADS)

Martínez-Murillo, Juan F.; Ruiz-Sinoga, José D.; Jiménez-Donaire, Virginia; Hueso-González, Paloma; Gabarrón-Galeote, Miguel A.

2014-05-01

Wildfires affect dramatically to soil physical, chemical and biological properties, which changes the hydrological and erosive soil response. The objectives of this study are to compare some soil properties affected by fire in field conditions. The experimental area is located in the South of Spain, 32 km western of the city of Málaga. In general, the area is characterized by a sub-humid Mediterranean climate (mean annual precipitation: 699 mm year-1; mean annual temperature: 17°C), with a substratum of alkaline metamorphic rocks. Vegetation cover consists on a mixed open wood of Quercus spp. and Pinus spp. with typical degraded Mediterranean scrub, where the dominant genus are Ulex spp. and Cistus spp. This area was partially affected by a wildfire on September 11th 2011. Soil samples were taken in burned and unburned areas: soil covered by shrubs, trees and bare soils. Unburned area was adjacent to the burned one and both of them had the same general conditions. On each microenvironment samples of the first 5 cm of soil were collected on September 19th 2011. The analyzed properties in the laboratory were organic matter (OM) and aggregate stability (AS). In general, fire affected mainly to OM (p<0.01). When we performed the analyses dividing the samples according to vegetal cover, the ANOVA showed that the wildfire only affected the OM content in soil covered by shrubs. In soil covered by trees and bare soil OM decreased, but it was insignificant. AS were not affected in any sampled environment.

Multielement geochemistry identifies the spatial pattern of soil and sediment contamination in an urban parkland, Western Australia.

PubMed

Rate, Andrew W

2018-06-15

Urban environments are dynamic and highly heterogeneous, and multiple additions of potential contaminants are likely on timescales which are short relative to natural processes. The likely sources and location of soil or sediment contamination in urban environment should therefore be detectable using multielement geochemical composition combined with rigorously applied multivariate statistical techniques. Soil, wetland sediment, and street dust was sampled along intersecting transects in Robertson Park in metropolitan Perth, Western Australia. Samples were analysed for near-total concentrations of multiple elements (including Cd, Ce, Co, Cr, Cu, Fe, Gd, La, Mn, Nd, Ni, Pb, Y, and Zn), as well as pH, and electrical conductivity. Samples at some locations within Robertson Park had high concentrations of potentially toxic elements (Pb above Health Investigation Limits; As, Ba, Cu, Mn, Ni, Pb, V, and Zn above Ecological Investigation Limits). However, these concentrations carry low risk due to the main land use as recreational open space, the low proportion of samples exceeding guideline values, and a tendency for the highest concentrations to be located within the less accessible wetland basin. The different spatial distributions of different groups of contaminants was consistent with different inputs of contaminants related to changes in land use and technology over the history of the site. Multivariate statistical analyses reinforced the spatial information, with principal component analysis identifying geochemical associations of elements which were also spatially related. A multivariate linear discriminant model was able to discriminate samples into a-priori types, and could predict sample type with 84% accuracy based on multielement composition. The findings suggest substantial advantages of characterising a site using multielement and multivariate analyses, an approach which could benefit investigations of other sites of concern. Copyright © 2018 Elsevier B.V. All rights reserved.

Biogenic NO emission from a spruce forest soil in the Fichtelgebirge (Germany) under the influence of different understorey vegetation cover

NASA Astrophysics Data System (ADS)

Bargsten, A.; Andreae, M. O.; Meixner, F. X.

2009-04-01

Within the framework of the EGER project (ExchanGE processes in mountainous Regions) soil samples have been taken from the spruce forest site "Weidenbrunnen" (Fichtelgebirge, Germany) in September 2008 to determine the NO exchange in the laboratory and for a series of soil analyses. The soil was sampled below different understorey vegetation covers: young Norway spruce, moss/litter, blueberries and grass. We investigated the net NO release rate from corresponding organic layers as well as from the A horizon of respective soils. Additionally we measured pH, C/N ratio, contents of ammonium, nitrate, and organic C, bulk density, the thickness of the organic layer and the quality of the organic matter. Net NO release rates (as well as the NO production and NO consumption rates) from the soil samples were determined by a fully automated laboratory incubation & fumigation system. Purified dry air passed five dynamic incubation chambers, four containing water saturated soil samples and one reference chamber. By this procedure, the soil samples dried out slowly (within 2-6 days), covering the full range of soil moisture (0-300% gravimetric soil moisture). To quantify NO production and NO consumption rates separately, soil samples were fumigated with zero-air (approx. 0 ppb NO) and air of 133 ppb NO. The chambers were placed in a thermostatted cabinet for incubation at 10 an 20˚ C. NO and H2O concentrations at the outlet of the five dynamic chambers were measured sequentially by chemiluminescence and IR-absorption based analyzers, switching corresponding valves every two minutes. Net NO release rates were determined from the NO concentration difference between soil containing and reference chambers. Corresponding measurements of H2O mixing ratio yielded the evaporation loss of the soil samples, which (referenced to the gravimetric soil water content before and after the incubation experiment) provided the individual soil moisture contents of each soil samples during the incubation experiment. Our contribution focus net NO release rates, NO production and NO consumption rates of spruce forest soils sampled under different understorey vegetation covers. Generally, organic layers show significant higher NO production and NO consumption rates than the soils from the corresponding A horizons. Soils under the understorey vegetation cover "moos/litter" revealed the lowest NO production and NO consumption rates. Net NO release rates, NO production and NO consumption rates of soil samples obtained below the four different under- storey vegetation covers will be discussed in terms of pH, C/N ratio, contents of ammonium, nitrate, and organic C, bulk density, thickness of organic layer, as well as quality of the organic matter.

Toxicity Testing of Soil Samples from Joliet Army Ammunition Plant, Illinois

DTIC Science & Technology

1994-02-01

NUMBER 11. SUPPLEMENTARY NOTES *When this study was conducted, ERDEC was known as the U.S. Army Chemical Research, Development and Engineering Center...release; distribution is unlimited. 13. ABSTRACT (Maximum 200 words) Environmental toxicity testing and soil chemical analyses were perfermed as part...Chromatography. Chemical residues found in soils included TNT, 1,3.5-trinitrobenzene (TNB), 2,4-dinitrotoluene (2,4-DNT), 2,6-DNT, 2-amino-4,6-DNT, 4-amino-2,6

In Situ Biological Treatment Test at Kelly Air Force Base. Volume 2. Field Test Results and Cost Model.

DTIC Science & Technology

1987-07-01

degradation of organic contaminants. In situ treatment affects contaminants sorbed to soil as well as dissolved in groundwater. It is potentially ...indigenous soil micro - organisms to multiply and degrade the waste material. Exxon’s Baytown refinery has been disposing of oily wastes by land farming...Group (ERG). Chemical analyses performed on soil samples included priority pollutant volatile and metal compounds, total hydrocarbons (alkanes), oil and

Assessment of groundwater and soil quality degradation using multivariate and geostatistical analyses, Dakhla Oasis, Egypt

NASA Astrophysics Data System (ADS)

Masoud, Alaa A.; El-Horiny, Mohamed M.; Atwia, Mohamed G.; Gemail, Khaled S.; Koike, Katsuaki

2018-06-01

Salinization of groundwater and soil resources has long been a serious environmental hazard in arid regions. This study was conducted to investigate and document the factors controlling such salinization and their inter-relationships in the Dakhla Oasis (Egypt). To accomplish this, 60 groundwater samples and 31 soil samples were collected in February 2014. Factor analysis (FA) and hierarchical cluster analysis (HCA) were integrated with geostatistical analyses to characterize the chemical properties of groundwater and soil and their spatial patterns, identify the factors controlling the pattern variability, and clarify the salinization mechanism. Groundwater quality standards revealed emergence of salinization (av. 885.8 mg/L) and extreme occurrences of Fe2+ (av. 17.22 mg/L) and Mn2+ (av. 2.38 mg/L). Soils were highly salt-affected (av. 15.2 dS m-1) and slightly alkaline (av. pH = 7.7). Evaporation and ion-exchange processes governed the evolution of two main water types: Na-Cl (52%) and Ca-Mg-Cl (47%), respectively. Salinization leads the chemical variability of both resources. Distinctive patterns of slight salinization marked the northern part and intense salinization marked the middle and southern parts. Congruence in the resources clusters confirmed common geology, soil types, and urban and agricultural practices. Minimizing the environmental and socioeconomic impacts of the resources salinization urges the need for better understanding of the hydrochemical characteristics and prediction of quality changes.

Chemistry and Mineralogy of Martian Soils from In-Situ Analyses

NASA Astrophysics Data System (ADS)

Yen, A. S.

2017-12-01

In-situ analyses of typical martian soils by the Spirit, Opportunity and Curiosity rovers have shown remarkable planet-scale similarities in composition. The Alpha Particle X-ray Spectrometer data indicate that fine-grained, basaltic soils analyzed at Gusev Crater, Meridiani Planum and Gale Crater are nearly identical when cross-calibration uncertainties between the individual instruments are considered. Martian soils generally exhibit correlated increases in S, Cl and Zn with finer grain sizes, balanced by decreasing Si and Al from the feldspar component. The trends in S, Cl and Zn are consistent with condensates of volcanic exhalations and indicate minimal aqueous alteration of the soil samples after the accumulation of the volcanic volatiles. The mineralogy established by the CheMin X-ray diffractometer on the Curiosity rover show that soils are dominated by plagioclase feldspar, pyroxenes, olivine, and amorphous material. Minor phases include hematite, magnetite and anhydrite. These results are consistent with the Mössbauer spectrometer data from Spirit and Opportunity which indicate that the iron is contained in olivine, pyroxene, hematite, magnetite, and a nanophase ferric iron oxide/hydroxide. With the exception of the nanophase/amorphous component, typical martian soils are fundamentally basaltic in nature and remain relatively unaltered. Variations from typical basaltic soils have also been observed: Local contributions to the soil are evident in a number of samples which contain characteristic chemical signatures of nearby rocks. Larger sand grains on surfaces of aeolian bedforms have distinct compositions consistent with greater proportions of olivine, and in some cases, magnetite. Extensively altered fine-grained deposits dominated by sulfates and silica at Gusev Crater are distinct from basaltic soils and are consistent with fumarolic origins.

Modification of gDNA extraction from soil for PCR designed for the routine examination of soil samples contaminated with Toxocara spp. eggs.

PubMed

Borecka, A; Gawor, J

2008-06-01

A modification of gDNA extraction was developed for the polymerase chain reaction (PCR) technique, intended for the detection and differentiation of Toxocara spp. eggs in soil or sediments. Sand samples from sandpits confirmed as being contaminated with Toxocara spp. eggs by the flotation technique were analysed by PCR. The use of proteinase K made it possible to obtain genomic DNA from the sample without needing to isolate eggs using flotation or to inactivate PCR inhibitors present in the sand. Specific primers in the PCR reaction allowed discrimination between T. canis and T. cati eggs. The modification simplified the procedure, thanks to eliminating the step of gDNA isolation from eggs, which is both laborious and difficult.

Isolation of Bdellovibrio sp. from soil samples in Mexico and their potential applications in control of pathogens.

PubMed

Oyedara, Omotayo Opemipo; De Luna-Santillana, Erick de Jesus; Olguin-Rodriguez, Omar; Guo, Xianwu; Mendoza-Villa, Marco Antonio; Menchaca-Arredondo, Jorge Luis; Elufisan, Temidayo Oluyomi; Garza-Hernandez, Javier Alfonso; Garcia Leon, Israel; Rodriguez-Perez, Mario Alberto

2016-12-01

In this study, two strains of Bdellovibrio were isolated from soil samples using the culture-dependent technique and two members of the family Enterobacteriaceae (Klebsiella sp. and Salmonella sp.) as prey. The Bdellovibrio strains were bacteriolytic, plaque-forming, and highly motile gram-negative bacteria. We identified and confirmed the Bdellovibrio strains using microscopy, PCR amplification, and sequencing of the 16S rRNA gene. They were observed to be different strains based on hit locus and prey range analyses. Here, the first report on Bdellovibrio strains isolated from soil in Mexico corroborates earlier report indicating that populations of Bdellovibrio found in soil are heterogeneous thereby the need to identify the various strains. © 2016 The Authors. MicrobiologyOpen published by John Wiley & Sons Ltd.

Soil formation in the Tsauchab Valley, Namibia

NASA Astrophysics Data System (ADS)

Eden, Marie; Bens, Oliver; Ramisch, Arne; Schwindt, Daniel; Völkel, Jörg

2016-04-01

The BMBF-funded project GeoArchives (Spaces) investigates soils and sediments in Southern Africa. A focus area lies on the Tsauchab Valley (Namibia), South of the Naukluft mountain range (24°26'40'' S, 16°10'40'' E). On a gently sloping alluvial fan facing East towards the river, the surface is characterized by a desert pavement covering soils used as farmland. The landscape units were mapped and the area at the lower slope of a hill was divided into three units: a rinsing surface and a gravel plain, separated by a channel. On these surfaces soil profiles were excavated. Profile description followed the German system (Bodenkundliche Kartieranleitung KA 5) and disturbed samples were taken at various depths and analysed in the lab. Undisturbed soil cores with a volume of 100 cm³ were taken just below the surface at a depth of ~1-6 cm. Lab analyses included texture and gravel content, colour, pH, electrical conductivity, carbonates, CNS, cation exchange capacity, pedogenic oxides, main and trace elements (XRF), and clay mineral distribution (XRD). Undisturbed samples were used to determine soil water retention curve, air permeability and bulk density. The profiles revealed moderately developed cambic soils rich in clay minerals and with total carbon contents ranging up to 1.8 %, bearing shrubs and after episodic rainfall a dense grass vegetation. Their genesis is discussed and interpreted in the context of the landscape and climate history of this semi-desert environment.

Soil fertility status and spatial distribution of selected trace elements in south-western Serbia

NASA Astrophysics Data System (ADS)

Mrvic, Vesna; Kostic-Kravljanac, Ljiljana; Cakmak, Dragan; Pivic, Radmila; Saljnikov, Elmira; Nikoloski, Mile; Perovic, Veljko

2010-05-01

Soil fertility status and spatial distribution of selected trace elements in south-western Serbia V. Mrvic, Lj. Kostic-Kravljanac, D. Čakmak, R. Pivić, E. Saljnikov, M. Nikoloski, V. Perović Institute of Soil Science, 11000 Belgrade, Serbia (vesnavmrvic@yahoo.com) Main characteristic of surface soil layer (pH in KCl, humus, available P and K), and content of trace elements (Ni, Cr, Cu, Zn, Pb, Cd, As, Hg) were analysed on area of southwestern Serbia, covering total 959 000 ha (one sample represents 1000 ha) . About 30 % of samples have very acid reaction. Main portion of soil samples (86%) is poorly suplied with available phosphorus (<8 mg/100g), and these are located under forests, meadows, pastures and orchards. Supplies of available potasium and humus are well. On the other hand, in small number of soil samples (4%), mostly on fertile alluvial soils, there are high P and K concentration, which are consequence of inadequate usage of mineral fertilizers. Content of trace elements in 70 % of soil samples is bellow maximum allowed concentration (MAC). The most frequente potential pollutants are Cr and Ni, which is assosiated with mafic and ultramafic rocks, which are common in this region (mountains naerby river Ibar - Troglav, Stolovi, Čemerno, Željin, Golija, Kopaonik; near Sjenica- peridotites of mn. Ozren). There are dominace of Eutric Leptosols soil type, with Ni content above 100 mg/kg, and in some samples above 1000 mg/kg. In smaller number of samples arsenic and lead exceed MAC, while other elements exceed MAD very rarelly. There are elevated Pb content in Kopaonik mountain area, and elevated As content besides this region, are in mine zone of Golija and Cemerno. These are mountain soils formed on acid igneous and metamorphic rocks, which are enriched with ores of Pb, Zn and other elements. Eventually negative influences of these elements on plants and other components of ecosystem may be esstimated only after detalied investigation.

Biota dose assessment of small mammals sampled near uranium mines in northern Arizona

DOE Office of Scientific and Technical Information (OSTI.GOV)

Jannik, T.; Minter, K.; Kuhne, W.

In 2015, the U. S. Geological Survey (USGS) collected approximately 50 small mammal carcasses from Northern Arizona uranium mines and other background locations. Based on the highest gross alpha results, 11 small mammal samples were selected for radioisotopic analyses. None of the background samples had significant gross alpha results. The 11 small mammals were identified relative to the three ‘indicator’ mines located south of Fredonia, AZ on the Kanab Plateau (Kanab North Mine, Pinenut Mine, and Arizona 1 Mine) (Figure 1-1) and are operated by Energy Fuels Resources Inc. (EFRI). EFRI annually reports soil analysis for uranium and radium-226 usingmore » Arizona Department of Environmental Quality (ADEQ)-approved Standard Operating Procedures for Soil Sampling (EFRI 2016a, 2016b, 2017). In combination with the USGS small mammal radioiosotopic tissue analyses, a biota dose assessment was completed by Savannah River National Laboratory (SRNL) using the RESidual RADioactivity-BIOTA (RESRAD-BIOTA, V. 1.8) dose assessment tool provided by the Argonne National Laboratory (ANL 2017).« less

Energy-dispersive X-ray fluorescence systems as analytical tool for assessment of contaminated soils.

PubMed

Vanhoof, Chris; Corthouts, Valère; Tirez, Kristof

2004-04-01

To determine the heavy metal content in soil samples at contaminated locations, a static and time consuming procedure is used in most cases. Soil samples are collected and analyzed in the laboratory at high quality and high analytical costs. The demand by government and consultants for a more dynamic approach and by customers requiring performances in which analyses are performed in the field with immediate feedback of the analytical results, is growing. Especially during the follow-up of remediation projects or during the determination of the sampling strategy, field analyses are advisable. For this purpose four types of ED-XRF systems, ranging from portable up to high performance laboratory systems, have been evaluated. The evaluation criteria are based on the performance characteristics for all the ED-XRF systems such as limit of detection, accuracy and the measurement uncertainty on one hand, and also the influence of the sample pretreatment on the obtained results on the other hand. The study proved that the field portable system and the bench top system, placed in a mobile van, can be applied as field techniques, resulting in semi-quantitative analytical results. A limited homogenization of the analyzed sample significantly increases the representativeness of the soil sample. The ED-XRF systems can be differentiated by their limits of detection which are a factor of 10 to 20 higher for the portable system. The accuracy of the results and the measurement uncertainty also improved using the bench top system. Therefore, the selection criteria for applicability of both field systems are based on the required detection level and also the required accuracy of the results.

Source identification of soil mercury in the Spanish islands.

PubMed

Rodríguez Martín, José Antonio; Carbonell, Gregoria; Nanos, Nikos; Gutiérrez, Carmen

2013-02-01

This study spatially analysed the relation between mercury (Hg) content in soil and Hg in rock fragment for the purpose of assessing natural soil Hg contribution compared with Hg from human inputs. We present the Hg content of 318 soil and rock fragment samples from 11 islands distributed into two Spanish archipelagos (the volcanic Canary Islands [Canaries] and the Mediterranean Balearic [Balearic] islands). Assumedly both are located far enough away from continental Hg sources to be able to minimise the effects of diffuse pollution. Physical and chemical soil properties were also specified for the samples. Hg contents were significantly greater in the Balearic limestone soils (61 μg kg(-1)) than in the volcanic soils of the Canaries (33 μg kg(-1)). Hg levels were also greater in topsoil than in rocky fragments, especially on the Balearics. The soil-to-rock ratios varied between 1 and 30. Interestingly, the highest topsoil-to-rock Hg ratio (>16 ×) was found in the vicinity of a coal-fired power plant in Majorca, whereas no similar areas in the Canary archipelago were identified.

Enhancement of MS2D Bartington point measurement of soil magnetic susceptibility

NASA Astrophysics Data System (ADS)

Fabijańczyk, Piotr; Zawadzki, Jarosław

2015-04-01

Field magnetometry is fast method used to assess the potential soil pollution. The most popular device used to measure the soil magnetic susceptibility on the soil surface is a MS2D Bartington. Single reading using MS2D device of soil magnetic susceptibility is low time-consuming but often characterized by considerable errors related to the instrument or environmental and lithogenic factors. Typically, in order to calculate the reliable average value of soil magnetic susceptibility, a series of MS2D readings is performed in the sample point. As it was analyzed previously, such methodology makes it possible to significantly reduce the nugget effect of the variograms of soil magnetic susceptibility that is related to the micro-scale variance and measurement errors. The goal of this study was to optimize the process of taking a series of MS2D readings, whose average value constitutes a single measurement, in order to take into account micro-scale variations of soil magnetic susceptibility in proper determination of this parameter. This was done using statistical and geostatistical analyses. The analyses were performed using field MS2D measurements that were carried out in the study area located in the direct vicinity of the Katowice agglomeration. At 150 sample points 10 MS2D readings of soil magnetic susceptibility were taken. Using this data set, series of experimental variograms were calculated and modeled. Firstly, using single random MS2D reading for each sample point, and next using the data set increased by adding one more MS2D reading, until their number reached 10. The parameters of variogram: nugget effect, sill and range of correlation were used to determine the most suitable number of MS2D readings at sample point. The distributions of soil magnetic susceptibility at sample point were also analyzed in order to determine adequate number of readings enabling to calculate reliable average soil magnetic susceptibility. The research leading to these results has received funding from the Polish-Norwegian Research Programme operated by the National Centre for Research and Development under the Norwegian Financial Mechanism 2009-2014 in the frame of Project IMPACT - Contract No Pol-Nor/199338/45/2013. References: Zawadzki J., Magiera T., Fabijańczyk P., 2007. The influence of forest stand and organic horizon development on soil surface measurement of magnetic susceptibility. Polish Journal of Soil Science, XL(2), 113-124 Zawadzki J., Fabijańczyk P., Magiera T., Strzyszcz Z., 2010. Study of litter influence on magnetic susceptibility measurements of urban forest topsoils using the MS2D sensor. Environmental Earth Sciences, 61(2), 223-230.

Using LUCAS topsoil database to estimate soil organic carbon content in local spectral libraries

NASA Astrophysics Data System (ADS)

Castaldi, Fabio; van Wesemael, Bas; Chabrillat, Sabine; Chartin, Caroline

2017-04-01

The quantification of the soil organic carbon (SOC) content over large areas is mandatory to obtain accurate soil characterization and classification, which can improve site specific management at local or regional scale exploiting the strong relationship between SOC and crop growth. The estimation of the SOC is not only important for agricultural purposes: in recent years, the increasing attention towards global warming highlighted the crucial role of the soil in the global carbon cycle. In this context, soil spectroscopy is a well consolidated and widespread method to estimate soil variables exploiting the interaction between chromophores and electromagnetic radiation. The importance of spectroscopy in soil science is reflected by the increasing number of large soil spectral libraries collected in the world. These large libraries contain soil samples derived from a consistent number of pedological regions and thus from different parent material and soil types; this heterogeneity entails, in turn, a large variability in terms of mineralogical and organic composition. In the light of the huge variability of the spectral responses to SOC content and composition, a rigorous classification process is necessary to subset large spectral libraries and to avoid the calibration of global models failing to predict local variation in SOC content. In this regard, this study proposes a method to subset the European LUCAS topsoil database into soil classes using a clustering analysis based on a large number of soil properties. The LUCAS database was chosen to apply a standardized multivariate calibration approach valid for large areas without the need for extensive field and laboratory work for calibration of local models. Seven soil classes were detected by the clustering analyses and the samples belonging to each class were used to calibrate specific partial least square regression (PLSR) models to estimate SOC content of three local libraries collected in Belgium (Loam belt and Wallonia) and Luxembourg. The three local libraries only consist of spectral data (199 samples) acquired using the same protocol as the one used for the LUCAS database. SOC was estimated with a good accuracy both within each local library (RMSE: 1.2 ÷ 5.4 g kg-1; RPD: 1.41 ÷ 2.06) and for the samples of the three libraries together (RMSE: 3.9 g kg-1; RPD: 2.47). The proposed approach could allow to estimate SOC everywhere in Europe only collecting spectra, without the need for chemical laboratory analyses, exploiting the potentiality of the LUCAS database and specific PLSR models.

Influence of Effluent Irrigation on Community Composition and Function of Ammonia-Oxidizing Bacteria in Soil

PubMed Central

Oved, Tamar; Shaviv, Avi; Goldrath, Tal; Mandelbaum, Raphi T.; Minz, Dror

2001-01-01

The effect of effluent irrigation on community composition and function of ammonia-oxidizing bacteria (AOB) in soil was evaluated, using techniques of molecular biology and analytical soil chemistry. Analyses were conducted on soil sampled from lysimeters and from a grapefruit orchard which had been irrigated with wastewater effluent or fertilizer-amended water (FAW). Specifically, comparisons of AOB community composition were conducted using denaturing gradient gel electrophoresis (DGGE) of PCR-amplified fragments of the gene encoding the α-subunit of the ammonia monooxygenase gene (amoA) recovered from soil samples and subsequent sequencing of relevant bands. A significant and consistent shift in the population composition of AOB was detected in soil irrigated with effluent. This shift was absent in soils irrigated with FAW, despite the fact that the ammonium concentration in the FAW was similar. At the end of the irrigation period, Nitrosospira-like populations were dominant in soils irrigated with FAW, while Nitrosomonas-like populations were dominant in effluent-irrigated soils. Furthermore, DGGE analysis of the amoA gene proved to be a powerful tool in evaluating the soil AOB community population and population shifts therein. PMID:11472914

Chemical speciation and potential mobility of heavy metals in the soil of former tin mining catchment.

PubMed

Ashraf, M A; Maah, M J; Yusoff, I

2012-01-01

This study describes the chemical speciation of Pb, Zn, Cu, Cr, As, and Sn in soil of former tin mining catchment. Total five sites were selected for sampling and subsequent subsamples were collected from each site in order to create a composite sample for analysis. Samples were analysed by the sequential extraction procedure using optical emission spectrometry (ICP OES). Small amounts of Cu, Cr, and As retrieved from the exchangeable phase, the ready available for biogeochemical cycles in the ecosystem. Low quantities of Cu and As could be taken up by plants in these kind of acidic soils. Zn not detected in the bioavailable forms while Pb is only present in negligible amounts in very few samples. The absence of mobile forms of Pb eliminates the toxic risk both in the trophic chain and its migration downwards the soil profile. The results also indicate that most of the metals have high abundance in residual fraction indicating lithogenic origin and low bioavailability of the metals in the studied soil. The average potential mobility for the metals giving the following order: Sn > Cu > Zn > Pb > Cr > As.

Chemical Speciation and Potential Mobility of Heavy Metals in the Soil of Former Tin Mining Catchment

PubMed Central

Ashraf, M. A.; Maah, M. J.; Yusoff, I.

2012-01-01

This study describes the chemical speciation of Pb, Zn, Cu, Cr, As, and Sn in soil of former tin mining catchment. Total five sites were selected for sampling and subsequent subsamples were collected from each site in order to create a composite sample for analysis. Samples were analysed by the sequential extraction procedure using optical emission spectrometry (ICP OES). Small amounts of Cu, Cr, and As retrieved from the exchangeable phase, the ready available for biogeochemical cycles in the ecosystem. Low quantities of Cu and As could be taken up by plants in these kind of acidic soils. Zn not detected in the bioavailable forms while Pb is only present in negligible amounts in very few samples. The absence of mobile forms of Pb eliminates the toxic risk both in the trophic chain and its migration downwards the soil profile. The results also indicate that most of the metals have high abundance in residual fraction indicating lithogenic origin and low bioavailability of the metals in the studied soil. The average potential mobility for the metals giving the following order: Sn > Cu > Zn > Pb > Cr > As. PMID:22566758

Root zone chemical ecology: new techniques for below grounf sampling and mass spectrometric analyses of volatile semiochemicals

USDA-ARS?s Scientific Manuscript database

The ban of methyl bromide as a soil fumigant has led to an urgent need to develop novel methods of control of soil-dwelling pests. The use of semiochemicals for below-ground insect and nematode control is one such novel avenue of research. New technologies to study semiochemically mediated below-g...

Variable temperature sensitivity of soil organic carbon in North American forests

Treesearch

Cinzia Fissore; Christian P. Giardina; Christopher W. Swanston; Gary M. King; Randall K. Kolka

2009-01-01

We investigated mean residence time (MRT) for soil organic carbon (SOC) sampled from paired hardwood and pine forests located along a 22 °C mean annual temperature (MAT) gradient in North America. We used acid hydrolysis fractionation, radiocarbon analyses, long-term laboratory incubations (525-d), and a three-pool model to describe the size and kinetics of...

Identification of heavy metal origins related to chemical and morphological soil properties using several non-destructive X-ray analytical methods.

PubMed

Akbulut, Songul; Grieken, Renevan; Kılıc, Mehmet A; Cevik, Ugur; Rotondo, Giuliana G

2013-03-01

Soils are complex mixtures of organic, inorganic materials, and metal compounds from anthropogenic sources. In order to identify the pollution sources, their magnitude and development, several X-ray analytical methods were applied in this study. The concentrations of 16 elements were determined in all the soil samples using energy dispersive X-ray fluorescence spectrometry. Soils of unknown origin were observed by scanning electron microscopy equipped with a Si(Li) X-ray detector using Monte Carlo simulation approach. The mineralogical analyses were carried out using X-ray diffraction spectrometry. Due to the correlations between heavy metals and oxide compounds, the samples were analyzed also by electron probe microanalyzer (EPMA) in order to have information about their oxide contents. On the other hand, soil pH and salinity levels were identified owing to their influence between heavy metal and soil-surface chemistry. Moreover, the geoaccumulation index (I (geo)) enables the assessment of contamination by comparing current and pre-industrial concentrations.

Composite Sampling Approaches for Bacillus anthracis Surrogate Extracted from Soil

PubMed Central

France, Brian; Bell, William; Chang, Emily; Scholten, Trudy

2015-01-01

Any release of anthrax spores in the U.S. would require action to decontaminate the site and restore its use and operations as rapidly as possible. The remediation activity would require environmental sampling, both initially to determine the extent of contamination (hazard mapping) and post-decon to determine that the site is free of contamination (clearance sampling). Whether the spore contamination is within a building or outdoors, collecting and analyzing what could be thousands of samples can become the factor that limits the pace of restoring operations. To address this sampling and analysis bottleneck and decrease the time needed to recover from an anthrax contamination event, this study investigates the use of composite sampling. Pooling or compositing of samples is an established technique to reduce the number of analyses required, and its use for anthrax spore sampling has recently been investigated. However, use of composite sampling in an anthrax spore remediation event will require well-documented and accepted methods. In particular, previous composite sampling studies have focused on sampling from hard surfaces; data on soil sampling are required to extend the procedure to outdoor use. Further, we must consider whether combining liquid samples, thus increasing the volume, lowers the sensitivity of detection and produces false negatives. In this study, methods to composite bacterial spore samples from soil are demonstrated. B. subtilis spore suspensions were used as a surrogate for anthrax spores. Two soils (Arizona Test Dust and sterilized potting soil) were contaminated and spore recovery with composites was shown to match individual sample performance. Results show that dilution can be overcome by concentrating bacterial spores using standard filtration methods. This study shows that composite sampling can be a viable method of pooling samples to reduce the number of analysis that must be performed during anthrax spore remediation. PMID:26714315

SEPARATION AND ISOLATION OF VOLATILE ORGANIC COMPOUNDS USING VACUUM DISTILLATION WITH GC/MS DETERMINATION

EPA Science Inventory

Vacuum distillation of water, soil, oil, and fish samples is presented as an alternative technique for determining volatile organic compounds (VOCs). Analyses of samples containing VOCs and non-VOCs at 50ppb concentrations were performed to evaluate method limitations. Analyte re...

Effect of soil moisture on the sorption of trichloroethene vapor to vadose-zone soil at picatinny arsenal, New Jersey

USGS Publications Warehouse

Smith, J.A.; Chiou, C.T.; Kammer, J.A.; Kile, D.E.

1990-01-01

This report presents data on the sorption of trichloroethene (TCE) vapor to vadose-zone soil above a contaminated water-table aquifer at Picatinny Arsenal in Morris County, NJ. To assess the impact of moisture on TCE sorption, batch experiments on the sorption of TCE vapor by the field soil were carried out as a function of relative humidity. The TCE sorption decreases as soil moisture content increases from zero to saturation soil moisture content (the soil moisture content in equilibrium with 100% relative humidity). The moisture content of soil samples collected from the vadose zone was found to be greater than the saturation soil-moisture content, suggesting that adsorption of TCE by the mineral fraction of the vadose-zone soil should be minimal relative to the partition uptake by soil organic matter. Analyses of soil and soil-gas samples collected from the field indicate that the ratio of the concentration of TCE on the vadose-zone soil to its concentration in the soil gas is 1-3 orders of magnitude greater than the ratio predicted by using an assumption of equilibrium conditions. This apparent disequilibrium presumably results from the slow desorption of TCE from the organic matter of the vadose-zone soil relative to the dissipation of TCE vapor from the soil gas.

Long-term fertilization alters chemically-separated soil organic carbon pools: Based on stable C isotope analyses

PubMed Central

Dou, Xiaolin; He, Ping; Cheng, Xiaoli; Zhou, Wei

2016-01-01

Quantification of dynamics of soil organic carbon (SOC) pools under the influence of long-term fertilization is essential for predicting carbon (C) sequestration. We combined soil chemical fractionation with stable C isotope analyses to investigate the C dynamics of the various SOC pools after 25 years of fertilization. Five types of soil samples (0–20, 20–40 cm) including the initial level (CK) and four fertilization treatments (inorganic nitrogen fertilizer, IN; balanced inorganic fertilizer, NPK; inorganic fertilizer plus farmyard manure, MNPK; inorganic fertilizer plus corn straw residue, SNPK) were separated into recalcitrant and labile fractions, and the fractions were analysed for C content, C:N ratios, δ13C values, soil C and N recalcitrance indexes (RIC and RIN). Chemical fractionation showed long-term MNPK fertilization strongly increased the SOC storage in both soil layers (0–20 cm = 1492.4 gC m2 and 20–40 cm = 1770.6 gC m2) because of enhanced recalcitrant C (RC) and labile C (LC). The 25 years of inorganic fertilizer treatment did not increase the SOC storage mainly because of the offsetting effects of enhanced RC and decreased LC, whereas no clear SOC increases under the SNPK fertilization resulted from the fast decay rates of soil C. PMID:26750143

Influence of management practices on microbial nitrogen cyclers in agricultural soils

NASA Astrophysics Data System (ADS)

García-Orenes, Fuensanta; Morugán-Coronado, Alicia; McMillan, Mary; Pereg, Lily

2016-04-01

Agricultural land management has great influences on soil properties, in particular on microbial communities, due to their sensitivity to the perturbations of the soils. This is even more relevant in Mediterranean agricultural areas under semi-arid conditions. The Mediterranean belt is suffering from an intense degradation of its soils due to the millennia of intense land use and due to unsustainable management practices. As a consequence this area is suffering from a depletion of N content. In this work we investigated the effect of several traditional agricultural management practices on specific functional groups related to the nitrogen cycle in the soil. A field experiment was performed with orchard orange trees (citrus sinesis) in Eastern Spain to assess the long-term effects of ploughing with inorganic fertilization (PI) and ecological practices (EP) (chipped pruned branches and weeds as well as manure from sheep and goats) on microbes that can undertake nitrogen fixation and denitrification. Nine samples of soil were taken from every treatment, near the drip irrigation point and in a zone without the influence of drip irrigation (between trees row), and total DNA extracted. DNA samples were stored at minus-20°C to be analysed by qPCR. Microbial populations involved in the N biochemical cycle were analysed by targeted amplification of key functional biomarker genes: the abundance of nifH (nitrogen fixation), nirS, nirK and nosZ (denitrification) detected by quantitative PCR (qPCR) has shown significant differences between treatments with higher abundance of all four genes in soils from ecological agricultural treatments. This may indicate that the ecological treatment created conditions that are more suitable for N cyclers in the soil and a better fertility and quality status of these soils.

DOE Office of Scientific and Technical Information (OSTI.GOV)

none, none; Tuchman, Nancy

The U.S. Department of Energy awarded Loyola University Chicago and the Institute of Environmental Sustainability (IES) $486,000.00 for the proposal entitled “Chicago clean air, clean water project: Environmental monitoring for a healthy, sustainable urban future.” The project supported the purchase of analytical instruments for the development of an environmental analytical laboratory. The analytical laboratory is designed to support the testing of field water and soil samples for nutrients, industrial pollutants, heavy metals, and agricultural toxins, with special emphasis on testing Chicago regional soils and water affected by coal-based industry. Since the award was made in 2010, the IES has beenmore » launched (fall 2013), and the IES acquired a new state-of-the-art research and education facility on Loyola University Chicago’s Lakeshore campus. Two labs were included in the research and education facility. The second floor lab is the Ecology Laboratory where lab experiments and analyses are conducted on soil, plant, and water samples. The third floor lab is the Environmental Toxicology Lab where lab experiments on environmental toxins are conducted, as well as analytical tests conducted on water, soil, and plants. On the south end of the Environmental Toxicology Lab is the analytical instrumentation collection purchased from the present DOE grant, which is overseen by a full time Analytical Chemist (hired January 2016), who maintains the instruments, conducts analyses on samples, and helps to train faculty and undergraduate and graduate student researchers.« less

Deep horizons: Soil Carbon sequestration and storage potential in grassland soils

NASA Astrophysics Data System (ADS)

Torres-Sallan, Gemma; Schulte, Rogier; Lanigan, Gary J.; Byrne, Kenneth A.; Reidy, Brian; Creamer, Rachel

2016-04-01

Soil Organic Carbon (SOC) enhances soil fertility, holding nutrients in a plant-available form. It also improves aeration and water infiltration. Soils are considered a vital pool for C (Carbon) sequestration, as they are the largest pool of C after the oceans, and contain 3.5 more C than the atmosphere. SOC models and inventories tend to focus on the top 30 cm of soils, only analysing total SOC values. Association of C with microaggregates (53-250 μm) and silt and clay (<53 μm) is considered C sequestration as these fractions offer the greatest protection against mineralization. This study assessed the role of aggregation in C sequestration throughout the profile, down to 1 m depth, of 30 grassland sites divided in 6 soil types. One kg sample was collected for each horizon, sieved at 8 mm and dried at 40 °C. Through a wet sieving procedure, four aggregate sizes were isolated: large macroaggregates (>2000 μm); macroaggregates (250-2000 μm); microaggregates and silt & clay. Organic C associated to each aggregate fraction was analysed on a LECO combustion analyser. Sand-free C was calculated for each aggregate size. For all soil types, 84% of the SOC located in the first 30 cm was contained inside macroaggregates and large macroaggregates. Given that this fraction has a turnover time of 1 to 10 years, sampling at that depth only provides information on the labile fraction in soil, and does not consider the longer term C sequestration potential. Only when looking at the whole profile, two clear trends could be observed: 1) soils with a clay increase at depth had most of their C located in the silt and clay fractions, which indicate their enhanced C sequestration capacity, 2) free-draining soils had a bigger part of their SOC located in the macroaggregate fractions. These results indicate that current C inventories and models that focus on the top 30 cm, do not accurately measure soil C sequestration potential in soils, but rather the more labile fraction. However, at depth soil forming processes have been identified as a major factor influencing C sequestration potential in soils. This has a major impact in further quantifying and sustaining C sequestration into the future. Soils with a high sequestration potential at depth need to be managed to enhance the residence time to contribute to future off-setting of greenhouse gas emissions.

The Aqueous Chemistry of the Soils at the Phoenix Landing Site

NASA Astrophysics Data System (ADS)

Kounaves, S. P.; Hecht, M. H.; Quinn, R.; West, S. J.; Young, S. M.; Clark, B. C.; Ming, D. W.; Boynton, W. V.; Gospodinova, K.; Kapit, J.; Deflores, L. P.; Smith, P. H.; Team, A

2008-12-01

The MECA Wet Chemistry Laboratory (WCL) analyses on the Phoenix Mars Lander have provided the first direct evidence of the soluble ionic components of the Martian soil. The analyses were performed on samples acquired from the surface (Rosy Red) and at the soil/ice interface approximately 4-5 cm under the surface (Sorceress). Even though the samples are from a rather unique site because of the high polar latitude and the polygon-patterned ground, they present a picture of a geochemical environment different from some previously hypothesized. Addition of 25mL of a water/calibrant solution to approximately 1cc of each of the soil samples resulted in the detection of a variety of ionic species, increased solution conductivity, and a slightly alkaline pH. The major constituent cations identified and quantified to date include Na+, K+, Mg2+, and Ca2+, while the anions included Cl- and ClO4-. Sulfate analysis was performed using a Ba2+ titration method. Even though carbonate and bicarbonate were not directly measured, their presence and quantification is supported by the alkaline pH of the solution, its buffering capacity after the addition of an acid, common ion effects, conductivity, and the modeled equilibrium species distribution of the system. The species distribution resulting from the modeling and consideration of additional interactions; dissolution, precipitation, ion exchange, ads/desorption, charge balance, the behavior over the several hours of monitoring, provided constraints for carbonate speciation and concentration and was used to formulate and test soil simulants. Results from the Thermal and Evolved Gas Analyzer (TEGA) also support the presence of a significant amount of calcite in the soil.

The Evaluation of Basal Respiration for Various Soil Textures in Ecologically Sensitive Area

NASA Astrophysics Data System (ADS)

Huličová, P.; Kotorová, D.; Fazekašová, D.; Hynšt, J.

2017-10-01

The present contribution was focused on monitoring changes in the soil basal respiration in different textures of soil in the dry polder Beša. The research was conducted between 2012 and 2014 on soil type Fluvisol locations on three soil textures: clay - loam soil, clayey soil and clay soil in three soil depths. The basal respiration (BR) has been determine by soil CO2 production measuring from incubated soil samples in serum bottles in laboratory condition. Release Co2 has been analysed by gas chromatography. Content of clay particles were in the range 52.18 % to 81.31%, indicating the high difference between the minimum and maximum content. By using of multiple LSD-test we recorded statistically significant impact of clay on basal respiration. Results confirm the values of basal respiration with the depth of the soil profile decreased.

The composition of secondary amorphous phases under different environmental conditions

NASA Astrophysics Data System (ADS)

Smith, R.; Rampe, E. B.; Horgan, B. H. N.; Dehouck, E.; Morris, R. V.

2017-12-01

X-ray diffraction (XRD) patterns measured by the CheMin instrument on the Mars Science Laboratory Curiosity rover demonstrate that amorphous phases are major components ( 15-60 wt%) of all rock and soil samples in Gale Crater. The nature of these phases is not well understood and could be any combination of primary (e.g., glass) and secondary (e.g., silica, ferrihydrite) phases. Secondary amorphous phases are frequently found as weathering products in soils on Earth, but these materials remain poorly characterized. Here we study a diverse suite of terrestrial samples including: sediments from recently de-glaciated volcanoes (Oregon), modern volcanic soils (Hawaii), and volcanic paleosols (Oregon) in order to determine how formation environment, climate, and diagenesis affect the abundance and composition of amorphous phases. We combine bulk XRD mineralogy with bulk chemical compositions (XRF) to calculate the abundance and bulk composition of the amorphous materials in our samples. We then utilize scanning transmission electron microscopy (STEM) and energy dispersive x-ray spectroscopy (EDS) to study the composition of individual amorphous phases at the micrometer scale. XRD analyses of 8 samples thus far indicate that the abundance of amorphous phases are: modern soils (20-80 %) > paleosols (15-40 %) > glacial samples (15-30 %). Initial calculations suggest that the amorphous components consist primarily of SiO2, Al2O3, TiO2, FeO and Fe2O3, with minor amounts of other oxides (e.g., MgO, CaO, Na2O). Compared to their respective crystalline counterparts, calculations indicate bulk amorphous components enriched in SiO2 for the glacial sample, and depleted in SiO2 for the modern soil and paleosol samples. STEM analyses reveal that the amorphous components consist of a number of different phases. Of the two samples analyzed using STEM thus far, the secondary amorphous phases have compositions with varying ratios of SiO2, Al2O3, TiO2, and Fe-oxides, consistent with mass balance calculation results, but inconsistent with well-known amorphous phase compositions (e.g., allophane, ferrihydrite). These results show that a number of secondary amorphous phases can form within a single soil environment. Continued analysis can help determine whether compositional trends can be linked to environmental factors.

Multivariate Analyses of Heavy Metals in Surface Soil Around an Organized Industrial Area in Eskisehir, Turkey.

PubMed

Malkoc, S; Yazici, B

2017-02-01

A total of 50 surface industrial area soil in Eskisehir, Turkey were collected and the concentrations of As, Cr, Cd, Co, Cu, Ni, Pb, Zn, Fe and Mg, at 11.34, 95.8, 1.37, 15.28, 33.06, 143.65, 14.34, 78.79 mg/kg, 188.80% and 78.70%, respectively. The EF values for As, Cu, Pb and Zn at a number of sampling sites were found to be the highest among metals. Igeo-index results show that the study area is moderately polluted with respect to As, Cd, Ni. According to guideline values of Turkey Environmental Quality Standard for Soils, there is no problem for Pb, but the Cd values are fairly high. However, Cr, Cu, Ni and Zn values mostly exceed the limits. Cluster analyses suggested that soil the contaminator values are homogenous in those sub classes. The prevention and remediation of the heavy metal soil pollution should focus on these high-risk areas in the future.

Assessment of Cu applications in two contrasting soils-effects on soil microbial activity and the fungal community structure.

PubMed

Keiblinger, Katharina M; Schneider, Martin; Gorfer, Markus; Paumann, Melanie; Deltedesco, Evi; Berger, Harald; Jöchlinger, Lisa; Mentler, Axel; Zechmeister-Boltenstern, Sophie; Soja, Gerhard; Zehetner, Franz

2018-03-01

Copper (Cu)-based fungicides have been used in viticulture to prevent downy mildew since the end of the 19th century, and are still used today to reduce fungal diseases. Consequently, Cu has built up in many vineyard soils, and it is still unclear how this affects soil functioning. The present study aimed to assess the short and medium-term effects of Cu contamination on the soil fungal community. Two contrasting agricultural soils, an acidic sandy loam and an alkaline silt loam, were used for an eco-toxicological greenhouse pot experiment. The soils were spiked with a Cu-based fungicide in seven concentrations (0-5000 mg Cu kg -1 soil) and alfalfa was grown in the pots for 3 months. Sampling was conducted at the beginning and at the end of the study period to test Cu toxicity effects on total microbial biomass, basal respiration and enzyme activities. Fungal abundance was analysed by ergosterol at both samplings, and for the second sampling, fungal community structure was evaluated via ITS amplicon sequences. Soil microbial biomass C as well as microbial respiration rate decreased with increasing Cu concentrations, with EC 50 ranging from 76 to 187 mg EDTA-extractable Cu kg -1 soil. Oxidative enzymes showed a trend of increasing activity at the first sampling, but a decline in peroxidase activity was observed for the second sampling. We found remarkable Cu-induced changes in fungal community abundance (EC 50 ranging from 9.2 to 94 mg EDTA-extractable Cu kg -1 soil) and composition, but not in diversity. A large number of diverse fungi were able to thrive under elevated Cu concentrations, though within the order of Hypocreales several species declined. A remarkable Cu-induced change in the community composition was found, which depended on the soil properties and, hence, on Cu availability.

Phytoremediation of arsenic contaminated soil by arsenic accumulators: a three year study.

PubMed

Raj, Anshita; Singh, Nandita

2015-03-01

To investigate whether phytoremediation can remove arsenic from the contaminated area, a study was conducted for three consecutive years to determine the efficiency of Pteris vittata, Adiantum capillus veneris, Christella dentata and Phragmites karka, on arsenic removal from the arsenic contaminated soil. Arsenic concentrations in the soil samples were analysed after harvesting in 2009, 2010 and 2011 at an interval of 6 months. Frond arsenic concentrations were also estimated in all the successive harvests. Fronds resulted in the greatest amount of arsenic removal. Root arsenic concentrations were analysed in the last harvest. Approximately 70 % of arsenic was removed by P. vittata which was recorded as the highest among the four plant species. However, 60 % of arsenic was removed by A. capillus veneris, 55.1 % by C. dentata and 56.1 % by P. karka of arsenic was removed from the contaminated soil in 3 years.

Measurement of Tritium in Gas Phase Soil Moisture and Helium-3 in Soil Gas at the Hanford Townsite and 100 K Area

DOE Office of Scientific and Technical Information (OSTI.GOV)

KB Olsen; GW Patton; R Poreda

2000-07-05

In 1999, soil gas samples for helium-3 measurements were collected at two locations on the Hanford Site. Eight soil gas sampling points ranging in depth from 1.5 to 9.8 m (4.9 to 32 ft) below ground surface (bgs) in two clusters were installed adjacent to well 699-41-1, south of the Hanford Townsite. Fifteen soil gas sampling points, ranging in depth from 2.1 to 3.2 m (7 to 10.4 ft) bgs, were installed to the north and east of the 100 KE Reactor. Gas phase soil moisture samples were collected using silica gel traps from all eight sampling locations adjacent tomore » well 699-41-1 and eight locations at the 100 K Area. No detectable tritium (<240 pCi/L) was found in the soil moisture samples from either the Hanford Townsite or 100 K Area sampling points. This suggests that tritiated moisture from groundwater is not migrating upward to the sampling points and there are no large vadose zone sources of tritium at either location. Helium-3 analyses of the soil gas samples showed significant enrichments relative to ambient air helium-3 concentrations with a depth dependence consistent with a groundwater source from decay of tritium. Helium-3/helium-4 ratios (normalized to the abundances in ambient air) at the Hanford Townsite ranged from 1.012 at 1.5 m (5 ft) bgs to 2.157 at 9.8 m (32 ft) bgs. Helium-3/helium-4 ratios at the 100 K Area ranged from 0.972 to 1.131. Based on results from the 100 K Area, the authors believe that a major tritium plume does not lie within that study area. The data also suggest there may be a tritium groundwater plume or a source of helium-3 to the southeast of the study area. They recommend that the study be continued by placing additional soil gas sampling points along the perimeter road to the west and to the south of the initial study area.« less

Top Soils Geochemical and Radioactivity Survey of Naples (Italy) Metropolitan.

NASA Astrophysics Data System (ADS)

Somma, R.; De Vivo, B.; Cicchella, D.

2001-05-01

The metropolitan area of Naples due to intense human activities is an emblematic area affected by various environmental pollution of soils and waters in addition to hydrogeological volcanic, seismic and bradyseismic hazards. The geology of the area is prevailing represented by volcanics erupted, from the Upper Pleistocene to Recent by Mt. Somma-Vesuvius on the east and the Campi Flegrei fields on the west. The morphology of the metropolitan area of Naples city can be subdivided in flat areas, constituted by reworked pyroclastic terrains, and by hills originated by the overlapping of different welded pyroclastic flows (i.e.: Campanian Ignimbrite and Neapoletan Yellow Tuff) intercalated with pyroclastic deposits of different origins (i.e.: Campi Flegrei, Mt. Somma-Vesuvius, Ischia) and ages. In order to compile a multi-element baseline geochemical and radioactivity mapping of the metropolitan area of the Napoli we have sampled for this study, in situ top soil and imported filling material (mainly soil, volcanic ash, pumice and scoriae). The sampling and radioactivity survey has been carried out on about 200 sampling sites covering an area of about 150 Km2, with a grid of 0.5 x 0.5 km in the urbanised downtown and 1 km x 1 km in the sub urban areas. In each site has been determined a radioactivity by a Scintrex GRS-500 at different emission spectra as total radioactivity (> 0.08 MeV and > 0.40 MeV), 238U (at 1.76 MeV mostly from 214Bi), 232Th (at 2.6 MeV mostly from 208Tl) and 40K (at 1.46 MeV mostly for 40K). The range of values of in situ soils are as follow for the in situ soils (Total radioactivity: 1327- 360 and 114- 47; 238U: 2.6- 1.3; 40K: 8.1- 3.1; 232U: 0.5- 0.1). Analyses of major, metallic elements and pH of each soil sample are in progress, while Pb isotopes compositions, for a selected number of samples, will be determined to discriminate the natural (geogenic) from the anthropogenic components in the soils by versus the anthropogenetic origin. The data collected will be statistically analysed and will be utilised, using a GIS, to compile multi-elements geochemical maps of the entire metropolitan areas of the Naples.

A simple evaluation of soil quality of waterlogged purple paddy soils with different productivities.

PubMed

Liu, Zhanjun; Zhou, Wei; Lv, Jialong; He, Ping; Liang, Guoqing; Jin, Hui

2015-01-01

Evaluation of soil quality can be crucial for designing efficient farming systems and ensuring sustainable agriculture. The present study aimed at evaluating the quality of waterlogged purple paddy soils with different productivities in Sichuan Basin. The approach involved comprehensive analyses of soil physical and chemical properties, as well as enzyme activities and microbial community structure measured by phospholipid fatty acid analysis (PLFA). A total of 36 soil samples were collected from four typical locations, with 12 samples representing high productivity purple paddy soil (HPPS), medium productivity purple paddy soil (MPPS) and low productivity purple paddy soil (LPPS), respectively. Most measured soil properties showed significant differences (P ≤ 0.05) among HPPS, MPPS and LPPS. Pearson correlation analysis and principal component analysis were used to identify appropriate soil quality indicators. A minimum data set (MDS) including total nitrogen (TN), available phosphorus (AP), acid phosphatase (ACP), total bacteria (TB) and arbuscular mycorrhizal fungi was established and accounted for 82.1% of the quality variation among soils. A soil quality index (SQI) was developed based on the MDS method, whilst HPPS, MPPS and LPPS received mean SQI scores of 0.725, 0.536 and 0.425, respectively, with a ranking of HPPS > MPPS > LPPS. HPPS showed relatively good soil quality characterized by optimal nutrient availability, enzymatic and microbial activities, but the opposite was true of LPPS. Low levels of TN, AP and soil microbial activities were considered to be the major constraints limiting the productivity in LPPS. All soil samples collected were rich in available N, K, Si and Zn, but deficient in available P, which may be the major constraint for the studied regions. Managers in our study area should employ more appropriate management in the LPPS to improve its rice productivity, and particularly to any potential limiting factor.

Differences in soil quality between organic and conventional farming over a maize crop season

NASA Astrophysics Data System (ADS)

Ferreira, Carla; Veiga, Adelcia; Puga, João; Kikuchi, Ryunosuke; Ferreira, António

2017-04-01

Land degradation in agricultural areas is a major concern. The large number of mechanical interventions and the amount of inputs used to assure high crop productivity, such as fertilizers and pesticides, have negative impacts on soil quality and threaten crop productivity and environmental sustainability. Organic farming is an alternative agriculture system, based on organic fertilizers, biological pest control and crop rotation, in order to mitigate soil degradation. Maize is the third most important cereal worldwide, with 2008 million tons produced in 2013 (IGN, 2016). In Portugal, 120000 ha of arable land is devoted to maize production, leading to annual yields of about 930000 ton (INE, 2015). This study investigates soil quality differences in maize farms under organic and conventional systems. The study was carried out in Coimbra Agrarian Technical School (ESAC), in central region of Portugal. ESAC campus comprises maize fields managed under conventional farming - Vagem Grande (32 ha), and organic fields - Caldeirão (12 ha), distancing 2.8 km. Vagem Grande has been intensively used for grain maize production for more than 20 years, whereas Caldeirão was converted to organic farming in 2008, and is being used to select regional maize varieties. The region has a Mediterranean climate. The maize fields have Eutric Fluvisols, with gentle slopes (<3%). In order to assess soil quality, three plots per farm were installed in May 2006, immediately after sowing, and monitored until October 2016, before harvesting, in order to cover all the crop season. Each plot comprises 5 plant lines (˜4 m width) with 20 m length. In order to assure the comparison between both farms, the same maize variety was used (Pigarro) in both fields, with the same compass. Soil samples were collected immediately after sowing. In Vagem Grande distinct soil samples were taken: (i) within plant lines, and (ii) between plant lines, since mineral fertilizers were spread over the field before sowing, and addition fertilizer was applied together with seeds, in plant lines. In Caldeirão, since fertilization was not performed due to weather constrains, soil samples were collected randomly within the plots. Additional soil samples were collected before harvest, in plant lines and between plant lines, in both farms. Surface (0-15 cm) and subsurface (15-30 cm) soil samples were taken. Soil samples were used for texture, pH, organic carbon, Kjeldhal nitrogen, nitrates, ammonia nitrogen, plant available phosphorus and potassium, and exchangeable cations (Ca2+, Mg2+, K+, Na+) analyses. Additional soil samples were also collected with soil ring samplers (137 cm3) for bulk density analyses after sowing. Surface water infiltration was also measured with tension infiltrometer (membrane of 20cm), using different tensions (0 cm, -3cm, -6 cm e -15cm). Decomposition rate and litter stabilisation was assessed over a 3-month period through the Tea Bag Index (Keuskamp et al., 2013). The number and diversity of earthworms were also measured at the surface (0-20cm), through extraction, and at the subsurface (>20cm), using mustard solution.

Geophagy practices and the content of chemical elements in the soil eaten by pregnant women in artisanal and small scale gold mining communities in Tanzania.

PubMed

Nyanza, Elias C; Joseph, Mary; Premji, Shahirose S; Thomas, Deborah Sk; Mannion, Cynthia

2014-04-15

Geophagy, a form of pica, is the deliberate consumption of soil and is relatively common across Sub-Saharan Africa. In Tanzania, pregnant women commonly eat soil sticks sold in the market (pemba), soil from walls of houses, termite mounds, and ground soil (kichuguu). The present study examined geophagy practices of pregnant women in a gold mining area of Geita District in northwestern Tanzania, and also examined the potential for exposure to chemical elements by testing soil samples. We conducted a cross sectional study using a convenience sample of 340 pregnant women, ranging in age from 15-49 years, who attended six government antenatal clinics in the Geita District, Tanzania. Structured interviews were conducted in June-August, 2012, to understand geophagy practices. In addition, soil samples taken from sources identified by pregnant women practicing geophagy were analysed for mineral element content. Geophagy was reported by 155 (45.6%) pregnant women with 85 (54.8%) initiating the practice in the first trimester. A total of 101 (65%) pregnant women reported eating soil 2 to 3 times per day while 20 (13%) ate soil more than 3 times per day. Of 155 pregnant women 107 (69%) bought pemba from local shops, while 48 (31%) consumed ground soil kichuguu. The estimated mean quantity of soil consumed from pemba was 62.5 grams/day. Arsenic, chromium, copper, iron, manganese, nickel and zinc levels were found in both pemba and kichuguu samples. Cadmium and mercury were found only in the kichuguu samples. Based on daily intake estimates, arsenic, copper and manganese for kichuguu and copper and manganese for pemba samples exceed the oral Minimum Risk Levels designated by the U.S. Agency for Toxic Substance and Disease Registry. Almost 50% of participants practiced geophagy in Geita District consistent with other reports from Africa. Both pemba and kichuguu contained chemical elements at varying concentration, mostly above MRLs. As such, pregnant women who eat soil in Geita District are exposed to potentially high levels of chemical elements, depending upon frequency of consumption, daily amount consumed and the source location of soil eaten.

The Benefits of Sample Return: Connecting Apollo Soils and Diviner Lunar Radiometer Remote Sensing Data

NASA Technical Reports Server (NTRS)

Greenhagen, B. T.; Donaldson-Hanna, K. L.; Thomas, I. R.; Bowles, N. E.; Allen, C. C.; Pieters, C. M.; Paige, D. A.

2014-01-01

The Diviner Lunar Radiometer, onboard NASA's Lunar Reconnaissance Orbiter, has produced the first global, high resolution, thermal infrared observations of an airless body. The Moon, which is the most accessible member of this most abundant class of solar system objects, is also the only body for which we have extraterrestrial samples with known spatial context. Here we present the results of a comprehensive study to reproduce an accurate simulated lunar environment, evaluate the most appropriate sample and measurement conditions, collect thermal infrared spectra of a representative suite of Apollo soils, and correlate them with Diviner observations of the lunar surface. We find that analyses of Diviner observations of individual sampling stations and SLE measurements of returned Apollo soils show good agreement, while comparisons to thermal infrared reflectance under terrestrial conditions do not agree well, which underscores the need for SLE measurements and validates the Diviner compositional dataset. Future work includes measurement of additional soils in SLE and cross comparisons with measurements in JPL Simulated Airless Body Emission Laboratory (SABEL).

Profiling soil microbial communities with next-generation sequencing: the influence of DNA kit selection and technician technical expertise.

PubMed

Soliman, Taha; Yang, Sung-Yin; Yamazaki, Tomoko; Jenke-Kodama, Holger

2017-01-01

Structure and diversity of microbial communities are an important research topic in biology, since microbes play essential roles in the ecology of various environments. Different DNA isolation protocols can lead to data bias and can affect results of next-generation sequencing. To evaluate the impact of protocols for DNA isolation from soil samples and also the influence of individual handling of samples, we compared results obtained by two researchers (R and T) using two different DNA extraction kits: (1) MO BIO PowerSoil ® DNA Isolation kit (MO_R and MO_T) and (2) NucleoSpin ® Soil kit (MN_R and MN_T). Samples were collected from six different sites on Okinawa Island, Japan. For all sites, differences in the results of microbial composition analyses (bacteria, archaea, fungi, and other eukaryotes), obtained by the two researchers using the two kits, were analyzed. For both researchers, the MN kit gave significantly higher yields of genomic DNA at all sites compared to the MO kit (ANOVA; P  < 0.006). In addition, operational taxonomic units for some phyla and classes were missed in some cases: Micrarchaea were detected only in the MN_T and MO_R analyses; the bacterial phylum Armatimonadetes was detected only in MO_R and MO_T; and WIM5 of the phylum Amoebozoa of eukaryotes was found only in the MO_T analysis. Our results suggest the possibility of handling bias; therefore, it is crucial that replicated DNA extraction be performed by at least two technicians for thorough microbial analyses and to obtain accurate estimates of microbial diversity.

Cadmium uptake by cocoa trees in agroforestry and monoculture systems under conventional and organic management.

PubMed

Gramlich, A; Tandy, S; Andres, C; Chincheros Paniagua, J; Armengot, L; Schneider, M; Schulin, R

2017-02-15

Cadmium (Cd) uptake by cocoa has recently attracted attention, after the European Union (EU) decided to establish values for tolerable Cd concentrations in cocoa products. Bean Cd concentrations from some cocoa provenances, especially from Latin America, were found to exceed these values. Cadmium uptake by cocoa is expected not only to depend on a variety of soil factors, but also on plant and management factors. In this study, we investigated the influence of different production systems on Cd uptake by cocoa in a long-term field trial in the Alto Beni Region of Bolivia, where cocoa trees are grown in monocultures and in agroforestry systems, both under organic and conventional management. Leaf, fruits and roots of two cultivars were sampled from each production system along with soil samples collected around these trees. Leaf, pod husk and bean samples were analysed for Cd, iron (Fe) and zinc (Zn), the roots for mycorrhizal abundance and the soil samples for 'total' and 'available' Cd, Fe and Zn as well as DGT-available Cd and Zn, pH, organic matter, texture, 'available' phosphorus (P) and potassium (K). Only a small part of the variance in bean and pod husk Cd was explained by management, soil and plant factors. Furthermore, the production systems and cultivars alone had no significant influence on leaf Cd. However, we found lower Cd leaf contents in agroforestry systems than in monocultures when analysed in combination with DGT-available soil Cd, cocoa cultivar and soil organic matter. Overall, this model explained 60% of the variance of the leaf Cd concentrations. We explain lower leaf Cd concentrations in agroforestry systems by competition for Cd uptake with other plants. The cultivar effect may be explained by cultivar specific uptake capacities or by a growth effect translating into different uptake rates, as the cultivars were of different size. Copyright © 2016 Elsevier B.V. All rights reserved.

Inventory and vertical migration of ¹³⁷Cs in Spanish mainland soils.

PubMed

Legarda, F; Romero, L M; Herranz, M; Barrera, M; Idoeta, R; Valiño, F; Olondo, C; Caro, A

2011-06-01

In this study the total activity of (137)Cs deposited per unit area over the Spanish peninsular territory was analysed using a 150 × 150 km(2) mesh grid, with samples taken from 29 points. The deposited activities ranged between 251 and 6074 Bq/m(2). A linear relationship was obtained between these values and the mean annual rainfall at each sampling point which allowed a map to be drawn, using GIS software, which shows the distribution of total deposited (137)Cs activity across the Spanish mainland. At twelve of these sampling points the vertical migration profile of (137)Cs was obtained. These profiles are separated into two groups with different behaviour, one of which includes clay and loam soils and the other containing sandy soils. For both groups of profiles the parameters of the convective-diffusive model, which describes the vertical migration of (137)Cs in the soil, v (apparent convection velocity) and D (apparent diffusion coefficient) were calculated. Copyright © 2011 Elsevier Ltd. All rights reserved.

Bioavailability of heavy metals, germanium and rare earth elements at Davidschacht dump-field in mine affected area of Freiberg (Saxony)

NASA Astrophysics Data System (ADS)

Midula, Pavol; Wiche, Oliver

2016-04-01

Bioavailability research presents an essential tool, in modern phytoremediation and phytomining technologies, allowing the estimation of plant available fractions of elements in soils. However, up to date, sufficient interdisciplinary knowledge on the biogeochemically impacted behavior of specific target elements, in particular Ge and REEs in mining affected soils and their uptake into strategically used plants is lacking. This presented work is focused on a correlation study between the concentrations of selected heavy metals, Ge and REEs in soils formed on the top of the dump-field of Davidschacht and the corresponding their concentrations in 12 vascular plant species. The mine-dump of Davidschacht, situated in the Freiberg (Saxony, Germany) municipality area was chosen as the study area, which has been considered to be a high contaminated enclave, due to the mining history of the region. In total 12 sampling sites with differing composition of plant species were selected. At each sampling site soil samples from a soil depth of 0 - 10 cm and samples of plant material (shoots) were taken. The soil samples were analysed for total concentration of elements, pH (H2O) and consequently analysed by 4-step sequential extraction (SE) to determine fractions of elements that are mobile (fraction 1), acid soluble (pH 5) (fraction 2), bound to organic and oxidizable matter (fraction 3) and bound to amorphic oxides (fraction 4). The plant material was decomposed by hydrofluoric acid in order to extract the elements. Concentrations of elements in soil extracts and digestion solutions were analysed by ICP-MS. For all species bioconcentration factor (BCF) was calculated of the total concentration of elements in order to investigate the bioaccumulation potential. Arsenic (As), cadmium (Cd) and lead (Pb) were chosen as the representative heavy metals. Within the REEs neodymium (Nd) and cerium (Ce) were selected as representatives for all REEs, since Nd and Ce correlated significant with the other elements from this group. High amounts of As, Cd, Pb in mould horizons were proved. The surprisingly highest concentrations were determined for As (in average 3328 mg kg-1). The results of the pH measurement indicates acid conditions (in average 4.86, min. 3.89) for whole mine heap. Due to the mobility of Cd and Pb in acid environment, a high mobility of Cd in mobile soil fractions (in average 0.58 mg kg-1) was found, that seems to be responsible for the Cd pollution of Freiberger Mulde river, situated near the dump-field in the East direction from the studied area. The Pb content was in the average 1513 mg kg-1. SE analyses shows, that only the minor amounts of these metals were accounted in fractions I - IV (As: 7.75 %, Pb: 5.48 %, Cd: 26.77 %). The total Ge content in soil samples was 2.7 mg.kg-1in average. The concentrations of Nd and Ce were 17.7 mg kg-1and 38.5 mg kg-1, which is even lower than the average Nd and Ce contents in the Earth crust. However, the concentration of Ge was roughly a factor of two higher, than this average showing a large pool of Ge that could be accessed by phytoextraction. The SE analyses shows, that the average in fractions I - IV is even much lower, than in the case of the above mentioned heavy metals in comparison with Ge (1.75 %), Nd (3.28 %) and Ce (3.12 %). The BCF calculated for plants shows, that the only element, which could be possibly used as the object of phytoaccumulation is Cd (the BCF > 1) in species Populus tremula (3.0, 1.7), Spirea douglasii (1.4, 2.2) and Tanacetum vulgare (3.2, 1.3) at the most sampling places. Since these species represent the natural occurring vegetation of the dump, the use of these species together with soil amendments enhancing the plant availability of elements in soil fractions hold promise for phytoextraction of economically valuable metalloids and consequently an in situ bioremediation of the dump field. This work was realised with the support of Christin Jahns on behalf of the Saxonia company and financial supported by grant scheme VEGA 1/0538/15 . The authors are grateful to students and laboratory assistants contributing in the field work and sample preparation.

Heavy Metal Pollution and Ecological Assessment around the Jinsha Coal-Fired Power Plant (China)

PubMed Central

Hu, Jiwei; Qin, Fanxin; Quan, Wenxuan; Cao, Rensheng; Wu, Xianliang

2017-01-01

Heavy metal pollution is a serious problem worldwide. In this study, 41 soil samples and 32 cabbage samples were collected from the area surrounding the Jinsha coal-fired power plant (JCFP Plant) in Guizhou Province, southwest China. Pb, Cd, Hg, As, Cu and Cr concentrations in soil samples and cabbage samples were analysed to study the pollution sources and risks of heavy metals around the power plant. The results indicate that the JCFP Plant contributes to the Pb, Cd, As, Hg, Cu, and Cr pollution in nearby soils, particularly Hg pollution. Cu and Cr in soils from both croplands and forestlands in the study area derive mainly from crustal materials or natural processes. Pb, Cd and As in soils from croplands arise partly through anthropogenic activities, but these elements in soils from forestlands originate mainly from crustal materials or natural processes. Hg pollution in soils from both croplands and forestlands is caused mainly by fly ash from the JCFP Plant. The cabbages grown in the study area were severely contaminated with heavy metals, and more than 90% of the cabbages had Pb concentrations exceeding the permissible level established by the Ministry of Health and the Standardization Administration of the People’s Republic of China. Additionally, 30% of the cabbages had As concentrations exceeding the permissible level. Because forests can protect soils from heavy metal pollution caused by atmospheric deposition, close attention should be given to the Hg pollution in soils and to the concentrations of Pb, As, Hg and Cr in vegetables from the study area. PMID:29258250

Heavy Metal Pollution and Ecological Assessment around the Jinsha Coal-Fired Power Plant (China).

PubMed

Huang, Xianfei; Hu, Jiwei; Qin, Fanxin; Quan, Wenxuan; Cao, Rensheng; Fan, Mingyi; Wu, Xianliang

2017-12-18

Heavy metal pollution is a serious problem worldwide. In this study, 41 soil samples and 32 cabbage samples were collected from the area surrounding the Jinsha coal-fired power plant (JCFP Plant) in Guizhou Province, southwest China. Pb, Cd, Hg, As, Cu and Cr concentrations in soil samples and cabbage samples were analysed to study the pollution sources and risks of heavy metals around the power plant. The results indicate that the JCFP Plant contributes to the Pb, Cd, As, Hg, Cu, and Cr pollution in nearby soils, particularly Hg pollution. Cu and Cr in soils from both croplands and forestlands in the study area derive mainly from crustal materials or natural processes. Pb, Cd and As in soils from croplands arise partly through anthropogenic activities, but these elements in soils from forestlands originate mainly from crustal materials or natural processes. Hg pollution in soils from both croplands and forestlands is caused mainly by fly ash from the JCFP Plant. The cabbages grown in the study area were severely contaminated with heavy metals, and more than 90% of the cabbages had Pb concentrations exceeding the permissible level established by the Ministry of Health and the Standardization Administration of the People's Republic of China. Additionally, 30% of the cabbages had As concentrations exceeding the permissible level. Because forests can protect soils from heavy metal pollution caused by atmospheric deposition, close attention should be given to the Hg pollution in soils and to the concentrations of Pb, As, Hg and Cr in vegetables from the study area.

Isotope fractionation of sandy-soil water during evaporation - an experimental study.

PubMed

Rao, Wen-Bo; Han, Liang-Feng; Tan, Hong-Bing; Wang, Shuai

2017-06-01

Soil samples containing water with known stable isotopic compositions were prepared. The soil water was recovered by using vacuum/heat distillation. The experiments were held under different conditions to control rates of water evaporation and water recovery. Recoveries, δ 18 O and δ 2 H values of the soil water were determined. Analyses of the data using a Rayleigh distillation model indicate that under the experimental conditions only loosely bound water is extractable in cases where the recovery is smaller than 100 %. Due to isotopic exchange between vapour and remaining water in the micro channels or capillaries of the soil matrix, isotopic fractionation may take place under near-equilibrium conditions. This causes the observed relationship between δ 2 H and δ 18 O of the extracted water samples to have a slope close to 8. The results of this study may indicate that, in arid zones when soil that initially contains water dries out, the slope of the relationship between δ 2 H and δ 18 O values should be close to 8. Thus, a smaller slope, as observed by some groundwater and soil water samples in arid zones, may be caused by evaporation of water before the water has entered the unsaturated zone.

Part C: Geochemistry of Soil Samples from 50 Solution-Collapse Features on the Coconino Plateau, Northern Arizona

USGS Publications Warehouse

Van Gosen, Bradley S.; Wenrich, Karen J.

1991-01-01

Soil sampling surveys were conducted during 1984-1986 across 50 solution-collapse features exposed on the Coconino Plateau of northern Arizona in order to determine whether soil geochemistry can be used to distinguish mineralized breccia pipes from unmineralized collapse features. The 50 sampled features represent the variety of collapse features that crop out on plateau surfaces in northwestern Arizonaoodeeplyorooted solution-collapse breccia pipes, near-surface gypsum collapses, and sinkholes. Of the 50 features that were sampled in this study, 3 are confirmed breccia pipes that contain significant uranium and base-metal minerals, I is believed to be a sinkhole with no economic potential, and 4 are stratabound copper deposits whose possible relationship to breccia pipes is yet to be determined. The remaining collapse features are suspected to overlie breccia pipes, although some of these may represent near surface gypsum collapse features. However, no exploratory drilling results or breccia exposures exist to indicate their underlying structure. The low cost and ease of soil sampling suggested that this technique be evaluated for breccia pipe exploration. This report provides the locations and geochemical results for the soil sampling surveys and brief descriptions of the 50 collapse features. The analytical results of almost 2,000 soil samples are provided in tabular hardcopy and dBase III Plus diskcopy format. The analytical data is provided in digital format to allow the reader to choose their own methods for evaluating the effectiveness of soil sampling over known and suspected breccia pipes. A pilot survey conducted over 17 collapse features in 1984 suggested that soil sampling might be useful in distinguishing mineralized breccia pipes from other circular features. Followup detailed surveys in 1985 and 1986 used a radial sampling pattern at each of 50 sites; at least one third of the samples were collected from areas outside of the collapse feature to provide background data. Samples were consistently collected from 3-4 inches depth after the pilot survey showed that metal concentrations were similar in samples from 3-4 inches and 7-8 inches depth. The geochemical analyses of the <80 mesh fractions of the soil samples were performed by the U.S. Geological Survey Analytical Laboratories and Geochemical Services, Inc. The analytical methods applied to these samples by the U.S. Geological Survey laboratories included inductively coupled plasma-atomic emission spectroscopy, X-ray fluorescence spectrometry, neutron activation, atomic absorption, delayed neutron activation, and classical wet chemistry for carbon, fluorine, and sulfur. Geochemical Services, Inc. analyzed the soil samples by inductively coupled plasma emission spectroscopy.

Part B: Geochemistry of Soil Samples from 50 Solution-Collapse Features on the Coconino Plateau, Northern Arizona

USGS Publications Warehouse

Van Gosen, Bradley S.; Wenrich, Karen J.

1991-01-01

Soil sampling surveys were conducted during 1984-1986 across 50 solution-collapse features exposed on the Coconino Plateau of northern Arizona in order to determine whether soil geochemistry can be used to distinguish mineralized breccia pipes from unmineralized collapse features. The 50 sampled features represent the variety of collapse features that crop out on plateau surfaces in northwestern Arizonaoodeeplyorooted solution-collapse breccia pipes, near-surface gypsum collapses, and sinkholes. Of the 50 features that were sampled in this study, 3 are confirmed breccia pipes that contain significant uranium and base-metal minerals, I is believed to be a sinkhole with no economic potential, and 4 are stratabound copper deposits whose possible relationship to breccia pipes is yet to be determined. The remaining collapse features are suspected to overlie breccia pipes, although some of these may represent near surface gypsum collapse features. However, no exploratory drilling results or breccia exposures exist to indicate their underlying structure. The low cost and ease of soil sampling suggested that this technique be evaluated for breccia pipe exploration. This report provides the locations and geochemical results for the soil sampling surveys and brief descriptions of the 50 collapse features. The analytical results of almost 2,000 soil samples are provided in tabular hardcopy and dBase III Plus diskcopy format. The analytical data is provided in digital format to allow the reader to choose their own methods for evaluating the effectiveness of soil sampling over known and suspected breccia pipes. A pilot survey conducted over 17 collapse features in 1984 suggested that soil sampling might be useful in distinguishing mineralized breccia pipes from other circular features. Followup detailed surveys in 1985 and 1986 used a radial sampling pattern at each of 50 sites; at least one third of the samples were collected from areas outside of the collapse feature to provide background data. Samples were consistently collected from 3-4 inches depth after the pilot survey showed that metal concentrations were similar in samples from 3-4 inches and 7-8 inches depth. The geochemical analyses of the <80 mesh fractions of the soil samples were performed by the U.S. Geological Survey Analytical Laboratories and Geochemical Services, Inc. The analytical methods applied to these samples by the U.S. Geological Survey laboratories included inductively coupled plasma-atomic emission spectroscopy, X-ray fluorescence spectrometry, neutron activation, atomic absorption, delayed neutron activation, and classical wet chemistry for carbon, fluorine, and sulfur. Geochemical Services, Inc. analyzed the soil samples by inductively coupled plasma emission spectroscopy.

Geochemistry of Soil Samples from 50 Solution-Collapse Features on the Coconino Plateau, Northern Arizona

USGS Publications Warehouse

Van Gosen, Bradley S.; Wenrich, Karen J.

1991-01-01

Soil sampling surveys were conducted during 1984-1986 across 50 solution-collapse features exposed on the Coconino Plateau of northern Arizona in order to determine whether soil geochemistry can be used to distinguish mineralized breccia pipes from unmineralized collapse features. The 50 sampled features represent the variety of collapse features that crop out on plateau surfaces in northwestern Arizonaoodeeplyorooted solution-collapse breccia pipes, near-surface gypsum collapses, and sinkholes. Of the 50 features that were sampled in this study, 3 are confirmed breccia pipes that contain significant uranium and base-metal minerals, I is believed to be a sinkhole with no economic potential, and 4 are stratabound copper deposits whose possible relationship to breccia pipes is yet to be determined. The remaining collapse features are suspected to overlie breccia pipes, although some of these may represent near surface gypsum collapse features. However, no exploratory drilling results or breccia exposures exist to indicate their underlying structure. The low cost and ease of soil sampling suggested that this technique be evaluated for breccia pipe exploration. This report provides the locations and geochemical results for the soil sampling surveys and brief descriptions of the 50 collapse features. The analytical results of almost 2,000 soil samples are provided in tabular hardcopy and dBase III Plus diskcopy format. The analytical data is provided in digital format to allow the reader to choose their own methods for evaluating the effectiveness of soil sampling over known and suspected breccia pipes. A pilot survey conducted over 17 collapse features in 1984 suggested that soil sampling might be useful in distinguishing mineralized breccia pipes from other circular features. Followup detailed surveys in 1985 and 1986 used a radial sampling pattern at each of 50 sites; at least one third of the samples were collected from areas outside of the collapse feature to provide background data. Samples were consistently collected from 3-4 inches depth after the pilot survey showed that metal concentrations were similar in samples from 3-4 inches and 7-8 inches depth. The geochemical analyses of the <80 mesh fractions of the soil samples were performed by the U.S. Geological Survey Analytical Laboratories and Geochemical Services, Inc. The analytical methods applied to these samples by the U.S. Geological Survey laboratories included inductively coupled plasma-atomic emission spectroscopy, X-ray fluorescence spectrometry, neutron activation, atomic absorption, delayed neutron activation, and classical wet chemistry for carbon, fluorine, and sulfur. Geochemical Services, Inc. analyzed the soil samples by inductively coupled plasma emission spectroscopy.

Part D: Geochemistry of Soil Samples from 50 Solution-Collapse Features on the Coconino Plateau, Northern Arizona

USGS Publications Warehouse

Van Gosen, Bradley S.; Wenrich, Karen J.

1991-01-01

Soil sampling surveys were conducted during 1984-1986 across 50 solution-collapse features exposed on the Coconino Plateau of northern Arizona in order to determine whether soil geochemistry can be used to distinguish mineralized breccia pipes from unmineralized collapse features. The 50 sampled features represent the variety of collapse features that crop out on plateau surfaces in northwestern Arizonaoodeeplyorooted solution-collapse breccia pipes, near-surface gypsum collapses, and sinkholes. Of the 50 features that were sampled in this study, 3 are confirmed breccia pipes that contain significant uranium and base-metal minerals, I is believed to be a sinkhole with no economic potential, and 4 are stratabound copper deposits whose possible relationship to breccia pipes is yet to be determined. The remaining collapse features are suspected to overlie breccia pipes, although some of these may represent near surface gypsum collapse features. However, no exploratory drilling results or breccia exposures exist to indicate their underlying structure. The low cost and ease of soil sampling suggested that this technique be evaluated for breccia pipe exploration. This report provides the locations and geochemical results for the soil sampling surveys and brief descriptions of the 50 collapse features. The analytical results of almost 2,000 soil samples are provided in tabular hardcopy and dBase III Plus diskcopy format. The analytical data is provided in digital format to allow the reader to choose their own methods for evaluating the effectiveness of soil sampling over known and suspected breccia pipes. A pilot survey conducted over 17 collapse features in 1984 suggested that soil sampling might be useful in distinguishing mineralized breccia pipes from other circular features. Followup detailed surveys in 1985 and 1986 used a radial sampling pattern at each of 50 sites; at least one third of the samples were collected from areas outside of the collapse feature to provide background data. Samples were consistently collected from 3-4 inches depth after the pilot survey showed that metal concentrations were similar in samples from 3-4 inches and 7-8 inches depth. The geochemical analyses of the <80 mesh fractions of the soil samples were performed by the U.S. Geological Survey Analytical Laboratories and Geochemical Services, Inc. The analytical methods applied to these samples by the U.S. Geological Survey laboratories included inductively coupled plasma-atomic emission spectroscopy, X-ray fluorescence spectrometry, neutron activation, atomic absorption, delayed neutron activation, and classical wet chemistry for carbon, fluorine, and sulfur. Geochemical Services, Inc. analyzed the soil samples by inductively coupled plasma emission spectroscopy.

A novel in-situ method for real-time monitoring of gas transport in soil

NASA Astrophysics Data System (ADS)

Laemmel, Thomas; Maier, Martin; Schack-Kirchner, Helmer; Lang, Friederike

2017-04-01

Gas exchange between soil and atmosphere is important for the biogeochemistry of soils. Gas transport in soil is commonly assumed to be governed by molecular diffusion and is usually described by the soil gas diffusion coefficient DS characterizing the ability of the soil to "transport passively" gas through the soil. One way to determine DS is sampling soil cores in the field and measuring DS in the lab. Unfortunately this method is destructive and laborious. Moreover, a few previous field studies identified other gas transport processes in soil to significantly enhance the diffusive gas transport. However, until now, no method is available to measure gas transport in situ in the soil. We developed a novel method to monitor gas transport in soil in situ. The method includes a custom made gas sampling device, the continuous injection of an inert tracer gas and inverse gas transport modelling in the soil. The gas sampling device has several sampling depths and can be easily installed into a vertical hole drilled by an auger, which allows for fast installation of the system. Helium (He) as inert tracer gas was injected continuously at the lower end of the device. The resulting steady state distribution of He was used to deduce the depth profile of DS. Gas transport in the soil surrounding the gas-sampling-device/soil system was modeled using the Finite Element Modeling program COMSOL . We tested our new method both in the lab and during two short field studies and compared the results with a reference method using soil cores. DS profiles obtained by our in-situ method were consistent with DS profiles determined based on soil core analyses. During a longer monitoring field campaign, typical soil-moisture effects upon gas diffusivity such as an increase during a drying period or a decrease after rain could be observed consistently. Under windy conditions we additionally measured for the first time the direct enhancement of gas transport in soil due to wind-induced pressure-pumping which could increase the effective DS up to 30% in the topsoil. Our novel monitoring method can be quickly and easily installed and allows for monitoring continuously soil gas transport over a long time. It allows monitoring physical modifications of soil gas diffusivity due to rain events or evaporation but it also allows studying non-diffusive gas transport processes in the soil.

Assessment of grass root effects on soil piping in sandy soils using the pinhole test

NASA Astrophysics Data System (ADS)

Bernatek-Jakiel, Anita; Vannoppen, Wouter; Poesen, Jean

2017-04-01

Soil piping is a complex land degradation process, which involves the hydraulic removal of soil particles by subsurface flow. This process is frequently underestimated and omitted in most soil erosion studies. However, during the last decades several studies reported the importance of soil piping in various climatic zones and for a wide range of soil types. Compared to sheet, rill and gully erosion, very few studies focused on the factors controlling piping and, so far, there is no research study dealing with the effects of plant roots on piping susceptibility of soils having a low cohesion. The objective of this study is therefore to assess the impact of grass root density (RD) on soil piping in sandy soils using the pinhole test. The pinhole test involves a water flow passing through a hole of 1 mm diameter in a soil specimen (sampled using a metal ring with a diameter of 5 cm and a length of 8 cm), under varying hydraulic heads (50 mm, 180 mm, 380 mm and 1020 mm; Nadal-Romero et al., 2011). To provide a quantitative assessment piping susceptibility of the soil sample, the pipeflow discharge (cm3 s-1) and the sediment discharge (g s-1) were measured every minute during a five minute test. Bare and root-permeated samples were tested, using a sandy soil with a sand, silt, clay content of respectively, 94%, 4% and 2%. The root-permeated topsoil samples were taken in field plots sown with a mixture of grasses with fibrous roots. All soil samples were placed on a sandbox with a 100 mm head for 24 hours to ensure a similar water content for all samples. In total, 67 pinhole tests (lasting 5 minutes each) were conducted, i.e. 43 root-permeated soil samples with RD ranging from 0.01 to 0.93 kg m-3 and 24 root-free soil samples as a reference. Clear piping erosion could be observed in 65% of the root-free soil samples, whereas only 17% of rooted soil samples revealed clear piping erosion during the tests. Statistical analyses show that there is a negative correlation (-0.41, p < 0.05) between RD and sediment discharge. Mean pipeflow discharge was 1.4 times larger for the root-free samples compared to the root-permeated samples, while mean sediment discharge was 3 times higher for the root-free samples compared to the rooted samples. This indicates that the presence of fibrous roots in topsoils decreases the susceptibility to soil piping significantly. Furthermore, a positive correlation between the hydraulic head (50-1020 mm) and sediment discharge was observed. Overall, our results suggest that root density is a highly relevant factor for decreasing the soil piping erosion rates in the sandy topsoils. The presence of even very low root densities (< 1 kg m3) decrease pipeflow and sediment discharge. A. Bernatek-Jakiel is supported by the ETIUDA doctoral scholarship (UMO-2015/16/T/ST10/00505) financed by the National Science Centre of Poland. Reference: Nadal-Romero, E., Verachtert, E., Maes, R., Poesen, J., 2011. Quantitative assessment of the piping erosion susceptibility of loess-derived soil horizons using the pinhole test. Geomorphology 135, 66-79.

A laboratory rainfall simulator to study the soil erosion and runoff water

NASA Astrophysics Data System (ADS)

Cancelo González, Javier; Rial, M. E.; Díaz-Fierros, Francisco

2010-05-01

The soil erosion and the runoff water composition in some areas affected by forest fires or submitted to intensive agriculture are an important factor to keep an account, particularly in sensitive areas like estuary and rias that have a high importance in the socioeconomic development of some regions. An understanding of runoff production indicates the processes by which pollutants reach streams and also indicates the management techniques that might be uses to minimize the discharge of these materials into surface waters. One of the most methodology implemented in the soil erosion studies is a rainfall simulation. This method can reproduce the natural soil degradation processes in field or laboratory experiences. With the aim of improve the rainfall-runoff generation, a laboratory rainfall simulator which incorporates a fan-like intermittent water jet system for rainfall generation were modified. The major change made to the rainfall simulator consist in a system to coupling stainless steel boxes, whose dimensions are 12 x 20 x 45 centimeters, and it allows to place soil samples under the rainfall simulator. Previously these boxes were used to take soil samples in field with more of 20 centimeters of depth, causing the minimum disturbance in their properties and structure. These new implementations in the rainfall simulator also allow collect water samples of runoff in two ways: firstly, the rain water that constituted the overland flow or direct runoff and besides the rain water seeps into the soil by the process of infiltration and contributed to the subsurface runoff. Among main the variables controlled in the rainfall simulations were the soil slope and the intensity and duration of rainfall. With the aim of test the prototype, six soil samples were collected in the same sampling point and subjected to rainfall simulations in laboratory with the same intensity and duration. Two samples will constitute the control test, and they were fully undisturbed, and four samples were subjected to controlled burnings with different fire severity: two samples burnt to 250°C and the other two samples burnt to 450°C. Preliminary laboratory data of soil erosion and surface and subsurface runoff were obtained. The water parameters analysed were: pH, electrical conductivity, temperature (in the moment of sampling) and suspended sediments, ammonium, nitrates, total nitrogen (Kjeldahl method), within 24 hours after sampling.

Reconnaissance techniques for determining soil-gas radon concentrations: an example from Prince Georges County, Maryland

USGS Publications Warehouse

Reimer, G.M.

1990-01-01

Radon reconnaissance requires some special considerations because a large area must be covered in a short period of time and analyses must be made soon after collection because of Rn decay. A simple approach to collection and field analysis consists of a small-diameter probe pounded into the ground to a depth of at least 0.75 m. Analysis is by an alpha-scintillometer. Soil-gas samples collected along a traverse in Prince Georges County, Maryland, demonstrates the utility of the technique. The reconnaissance sampling revealed Rn soil-gas concentrations of up to 2500 pCi/L (picocuries per liter) indicating that the potential exists for indoor accumulations in excess of 4 pCi/L. -from Author

SMARTE'S SITE CHARACTERIZATION TOOL

EPA Science Inventory

Site Characterization involves collecting environmental data to evaluate the nature and extent of contamination. Environmental data could consist of chemical analyses of soil, sediment, water or air samples. Typically site characterization data are statistically evaluated for thr...

Long-term effects of crude oil contamination and bioremediation in a soil ecosystem

DOE Office of Scientific and Technical Information (OSTI.GOV)

Duncan, K.; Levetin, E.; Buck, P.

1995-12-31

Analysis of samples taken from three experimental soil lysimeters demonstrate marked effects on the soil chemistry and on bacterial, fungal, nematode, and plant communities three years after the application of crude oil. The lysimeters are located at the Amoco Production Research Environmental Test Facility in Rogers County, OK, and were originally used to evaluate the effectiveness of managed (application of fertilizer and water, one lysimeter) vs. unmanaged bioremediation (one lysimeter) of Michigan Silurian crude oil compared to one uncontaminated control lysimeter. Five, two-foot-long soil cores were extracted from each lysimeter, each divided into three sections, and the like sections mixedmore » together to form composited soil samples. All subsequent chemical and microbiological analyses were performed on these nine composited samples. Substantial variation was found among the lysimeters for certain soil chemical characteristics [% moisture, pH, total Kjeldahl nitrogen (TKN), ammonia nitrogen (NH{sub 4}-N), phosphate phosphorous (PO{sub 4}-P), and sulfate (SO{sub 4}{sup -2})]. The managed lysimeter had 10% the level of total petroleum hydrocarbons (TPH-IR) as did the unmanaged lysimeter. Assessment of the microbial community was performed for heterotropic: bacteria, fungi, and aromatic hydrocarbon-degrading bacteria by dilution onto solid media. Hydrocarbon degrading bacteria were elevated in both oil-contaminated lysimeters. Nematodes were extracted from soil samples, identified to genus, and classified according to their mode of nutrition. All vegetation and roots were removed from each lysimeter after the soil samples were taken, representative plants were pressed for identification, and the dry weight of all plants (total biomass) for each lysimeter was determined. The plant species were predominantly those found in disturbed habitats.« less

Decomposition Odour Profiling in the Air and Soil Surrounding Vertebrate Carrion

PubMed Central

2014-01-01

Chemical profiling of decomposition odour is conducted in the environmental sciences to detect malodourous target sources in air, water or soil. More recently decomposition odour profiling has been employed in the forensic sciences to generate a profile of the volatile organic compounds (VOCs) produced by decomposed remains. The chemical profile of decomposition odour is still being debated with variations in the VOC profile attributed to the sample collection technique, method of chemical analysis, and environment in which decomposition occurred. To date, little consideration has been given to the partitioning of odour between different matrices and the impact this has on developing an accurate VOC profile. The purpose of this research was to investigate the decomposition odour profile surrounding vertebrate carrion to determine how VOCs partition between soil and air. Four pig carcasses (Sus scrofa domesticus L.) were placed on a soil surface to decompose naturally and their odour profile monitored over a period of two months. Corresponding control sites were also monitored to determine the VOC profile of the surrounding environment. Samples were collected from the soil below and the air (headspace) above the decomposed remains using sorbent tubes and analysed using gas chromatography-mass spectrometry. A total of 249 compounds were identified but only 58 compounds were common to both air and soil samples. This study has demonstrated that soil and air samples produce distinct subsets of VOCs that contribute to the overall decomposition odour. Sample collection from only one matrix will reduce the likelihood of detecting the complete spectrum of VOCs, which further confounds the issue of determining a complete and accurate decomposition odour profile. Confirmation of this profile will enhance the performance of cadaver-detection dogs that are tasked with detecting decomposition odour in both soil and air to locate victim remains. PMID:24740412

Decomposition odour profiling in the air and soil surrounding vertebrate carrion.

PubMed

Forbes, Shari L; Perrault, Katelynn A

2014-01-01

Chemical profiling of decomposition odour is conducted in the environmental sciences to detect malodourous target sources in air, water or soil. More recently decomposition odour profiling has been employed in the forensic sciences to generate a profile of the volatile organic compounds (VOCs) produced by decomposed remains. The chemical profile of decomposition odour is still being debated with variations in the VOC profile attributed to the sample collection technique, method of chemical analysis, and environment in which decomposition occurred. To date, little consideration has been given to the partitioning of odour between different matrices and the impact this has on developing an accurate VOC profile. The purpose of this research was to investigate the decomposition odour profile surrounding vertebrate carrion to determine how VOCs partition between soil and air. Four pig carcasses (Sus scrofa domesticus L.) were placed on a soil surface to decompose naturally and their odour profile monitored over a period of two months. Corresponding control sites were also monitored to determine the VOC profile of the surrounding environment. Samples were collected from the soil below and the air (headspace) above the decomposed remains using sorbent tubes and analysed using gas chromatography-mass spectrometry. A total of 249 compounds were identified but only 58 compounds were common to both air and soil samples. This study has demonstrated that soil and air samples produce distinct subsets of VOCs that contribute to the overall decomposition odour. Sample collection from only one matrix will reduce the likelihood of detecting the complete spectrum of VOCs, which further confounds the issue of determining a complete and accurate decomposition odour profile. Confirmation of this profile will enhance the performance of cadaver-detection dogs that are tasked with detecting decomposition odour in both soil and air to locate victim remains.

The role of acoustic screens in distribution of technogenic magnetic particles and chemical pollution in roadside soil

NASA Astrophysics Data System (ADS)

Wawer, Małgorzata; Magiera, Tadeusz; Szuszkiewicz, Marcin

2015-04-01

Roads constructed nowadays should by all means be functional for their motorized users but at the same time their effect on the environment ought to be limited to the minimum. Despite the existence of various methods for preventing from negative influence of roads on the environment, there is still lack of adequate techniques to monitor and reduce the spreading of roadside pollution in the air and soils. The aim of the study was to assess the influence of acoustic screens on spreading and deposition of solid pollutants deriving from car emissions, based on their quantitative and qualitative analysis. During this study, measurements of magnetic susceptibility and analyses of heavy metals as well as Pt and Rh contents in soil and plant samples (Taraxacum officinale, Plantago major, Parthenocissus quinquefolia) collected near different kinds of acoustic screens ("green walls", Plexiglass, sawdust concrete, steel panels and earth embankments) have been done. Previous investigations showed showed that most of traffic emission is deposited in the close vicinity of the roads (up to 10 m) and the level of contamination decreased with increasing distance from the road edge. However, the results of this project indicate that, in the area where the acoustic screens are located, this distribution is disturbed and the additional enrichment of heavy metals in soil about 10 - 15 m behind screens is observed. Spatial distribution of heavy metal contents in soil samples corresponds to its magnetic susceptibility values. High contents of Fe, Zn, Mn and Pb was observed next to acoustic screens made of sawdust concrete and steel panels. Additionally, concentration of Zn in soil samples collected close to these screens exceeded threshold value. Analyses of plants showed that the highest content of examined elements and highest values of magnetic susceptibility were recorded near road edge. What is more, samples of Parthenocissus quinquefolia collected at height 0.2 m were characterized by higher contents of Cu, Pb, Zn, Mn and Fe and higher magnetic susceptibility values than samples collected at height 2 m.

Martian Analogue Sample Characterization and Spectral Library Development at the Johnson Space Center

NASA Technical Reports Server (NTRS)

Morris, Richard V.

2002-01-01

An extensive collection of Martian analogue samples housed at the Johnson Space Center is the focus of ongoing research by the JSC Mars soil genesis group and their collaborators. Because the major element composition of Martian meteorites and in situ analyses of Martian soils and rocks indicate that Mars is predominantly an iron-rich basaltic world, the focus of active sample collection and analysis is basaltic materials and their hydrolytic (both aqueous and hydrothermal) and sulfatetic alteration products. Described below are the scope of the JSC Mars analogue sample collection, the characterization process, and plans to incorporate the data into spectral libraries for the Mars 2003 Mars Exploration Rover (MER) and Mars 2005 Mars Reconnaissance Orbiter (MRO) CRISM missions.

Geologic and hydrologic data for the municipal solid waste landfill facility, U.S. Army Air Defense Artillery Center and Fort Bliss, El Paso County, Texas

USGS Publications Warehouse

Abeyta, Cynthia G.; Frenzel, P.F.

1999-01-01

Geologic and hydrologic data for the Municipal Solid Waste Landfill Facility on the U.S. Army Air Defense Artillery Center and Fort Bliss in El Paso County, Texas, were collected by the U.S. Geological Survey in cooperation with the U.S. Department of the Army. The 106.03-acre landfill has been in operation since January 1974. The landfill contains household refuse, Post solid wastes, bulky items, grass and tree trimmings from family housing, refuse from litter cans, construction debris, classified waste (dry), dead animals, asbestos, and empty oil cans. The depth of the filled areas is about 30 feet and the cover, consisting of locally derived material, is 2 to 3 feet thick. Geologic and hydrologic data were collected at or adjacent to the landfill during (1) drilling of 10 30- to 31-foot boreholes that were completed with gas-monitoring probes, (2) drilling of a 59-foot borehole, (3) drilling of a 355-foot borehole that was completed as a ground-water monitoring well, and (4) in situ measurements made on the landfill cover. After completion, the gas- monitoring probes were monitored on a quarterly basis (1 year total) for gases generated by the landfill. Water samples were collected from the ground-water monitoring well for chemical analysis. Data collection is divided into two elements: geologic data and hydrologic data. Geologic data include lithologic descriptions of cores and cuttings, geophysical logs, soil- gas and ambient-air analyses, and chemical analyses of soil. Hydrologic data include physical properties, total organic carbon, and pH of soil and sediment samples; soil-water chloride and soil-moisture analyses; physical properties of the landfill cover; measurements of depth to ground water; and ground-water chemical analyses. Interpretation of data is not included in this report.

Automated image analysis for quantitative fluorescence in situ hybridization with environmental samples.

PubMed

Zhou, Zhi; Pons, Marie Noëlle; Raskin, Lutgarde; Zilles, Julie L

2007-05-01

When fluorescence in situ hybridization (FISH) analyses are performed with complex environmental samples, difficulties related to the presence of microbial cell aggregates and nonuniform background fluorescence are often encountered. The objective of this study was to develop a robust and automated quantitative FISH method for complex environmental samples, such as manure and soil. The method and duration of sample dispersion were optimized to reduce the interference of cell aggregates. An automated image analysis program that detects cells from 4',6'-diamidino-2-phenylindole (DAPI) micrographs and extracts the maximum and mean fluorescence intensities for each cell from corresponding FISH images was developed with the software Visilog. Intensity thresholds were not consistent even for duplicate analyses, so alternative ways of classifying signals were investigated. In the resulting method, the intensity data were divided into clusters using fuzzy c-means clustering, and the resulting clusters were classified as target (positive) or nontarget (negative). A manual quality control confirmed this classification. With this method, 50.4, 72.1, and 64.9% of the cells in two swine manure samples and one soil sample, respectively, were positive as determined with a 16S rRNA-targeted bacterial probe (S-D-Bact-0338-a-A-18). Manual counting resulted in corresponding values of 52.3, 70.6, and 61.5%, respectively. In two swine manure samples and one soil sample 21.6, 12.3, and 2.5% of the cells were positive with an archaeal probe (S-D-Arch-0915-a-A-20), respectively. Manual counting resulted in corresponding values of 22.4, 14.0, and 2.9%, respectively. This automated method should facilitate quantitative analysis of FISH images for a variety of complex environmental samples.

Size Matters: Assessing Optimum Soil Sample Size for Fungal and Bacterial Community Structure Analyses Using High Throughput Sequencing of rRNA Gene Amplicons

PubMed Central

Penton, C. Ryan; Gupta, Vadakattu V. S. R.; Yu, Julian; Tiedje, James M.

2016-01-01

We examined the effect of different soil sample sizes obtained from an agricultural field, under a single cropping system uniform in soil properties and aboveground crop responses, on bacterial and fungal community structure and microbial diversity indices. DNA extracted from soil sample sizes of 0.25, 1, 5, and 10 g using MoBIO kits and from 10 and 100 g sizes using a bead-beating method (SARDI) were used as templates for high-throughput sequencing of 16S and 28S rRNA gene amplicons for bacteria and fungi, respectively, on the Illumina MiSeq and Roche 454 platforms. Sample size significantly affected overall bacterial and fungal community structure, replicate dispersion and the number of operational taxonomic units (OTUs) retrieved. Richness, evenness and diversity were also significantly affected. The largest diversity estimates were always associated with the 10 g MoBIO extractions with a corresponding reduction in replicate dispersion. For the fungal data, smaller MoBIO extractions identified more unclassified Eukaryota incertae sedis and unclassified glomeromycota while the SARDI method retrieved more abundant OTUs containing unclassified Pleosporales and the fungal genera Alternaria and Cercophora. Overall, these findings indicate that a 10 g soil DNA extraction is most suitable for both soil bacterial and fungal communities for retrieving optimal diversity while still capturing rarer taxa in concert with decreasing replicate variation. PMID:27313569

Comparison of DNA extraction protocols for microbial communities from soil treated with biochar

PubMed Central

Leite, D.C.A.; Balieiro, F.C.; Pires, C.A.; Madari, B.E.; Rosado, A.S.; Coutinho, H.L.C.; Peixoto, R.S.

2014-01-01

Many studies have evaluated the effects of biochar application on soil structure and plant growth. However, there are very few studies describing the effect of biochar on native soil microbial communities. Microbial analysis of environmental samples requires accurate and reproducible methods for the extraction of DNA from samples. Because of the variety among microbial species and the strong adsorption of the phosphate backbone of the DNA molecule to biochar, extracting and purifying high quality microbial DNA from biochar-amended soil is not a trivial process and can be considerably more difficult than the extraction of DNA from other environmental samples. The aim of this study was to compare the relative efficacies of three commercial DNA extraction kits, the FastDNA® SPIN Kit for Soil (FD kit), the PowerSoil® DNA Isolation Kit (PS kit) and the ZR Soil Microbe DNA Kit Miniprep™ (ZR kit), for extracting microbial genomic DNA from sand treated with different types of biochar. The methods were evaluated by comparing the DNA yields and purity and by analysing the bacterial and fungal community profiles generated by PCR-DGGE. Our results showed that the PCR-DGGE profiles for bacterial and fungal communities were highly affected by the purity and yield of the different DNA extracts. Among the tested kits, the PS kit was the most efficient with respect to the amount and purity of recovered DNA and considering the complexity of the generated DGGE microbial fingerprint from the sand-biochar samples. PMID:24948928

Comparison of DNA extraction protocols for microbial communities from soil treated with biochar.

PubMed

Leite, D C A; Balieiro, F C; Pires, C A; Madari, B E; Rosado, A S; Coutinho, H L C; Peixoto, R S

2014-01-01

Many studies have evaluated the effects of biochar application on soil structure and plant growth. However, there are very few studies describing the effect of biochar on native soil microbial communities. Microbial analysis of environmental samples requires accurate and reproducible methods for the extraction of DNA from samples. Because of the variety among microbial species and the strong adsorption of the phosphate backbone of the DNA molecule to biochar, extracting and purifying high quality microbial DNA from biochar-amended soil is not a trivial process and can be considerably more difficult than the extraction of DNA from other environmental samples. The aim of this study was to compare the relative efficacies of three commercial DNA extraction kits, the FastDNA® SPIN Kit for Soil (FD kit), the PowerSoil® DNA Isolation Kit (PS kit) and the ZR Soil Microbe DNA Kit Miniprep™ (ZR kit), for extracting microbial genomic DNA from sand treated with different types of biochar. The methods were evaluated by comparing the DNA yields and purity and by analysing the bacterial and fungal community profiles generated by PCR-DGGE. Our results showed that the PCR-DGGE profiles for bacterial and fungal communities were highly affected by the purity and yield of the different DNA extracts. Among the tested kits, the PS kit was the most efficient with respect to the amount and purity of recovered DNA and considering the complexity of the generated DGGE microbial fingerprint from the sand-biochar samples.

Radiation dose in the high background radiation area in Kerala, India.

PubMed

Christa, E P; Jojo, P J; Vaidyan, V K; Anilkumar, S; Eappen, K P

2012-03-01

A systematic radiological survey has been carried out in the region of high-background radiation area in Kollam district of Kerala to define the natural gamma-radiation levels. One hundred and forty seven soil samples from high-background radiation areas and five samples from normal background region were collected as per standard sampling procedures and were analysed for (238)U, (232)Th and (40)K by gamma-ray spectroscopy. External gamma dose rates at all sampling locations were also measured using a survey meter. The activities of (238)U, (232)Th and (40)K was found to vary from 17 to 3081 Bq kg(-1), 54 to 11976 Bq kg(-1) and BDL (67.4 Bq kg(-1)) to 216 Bq kg(-1), respectively, in the study area. Such heterogeneous distribution of radionuclides in the region may be attributed to the deposition phenomenon of beach sand soil in the region. Radium equivalent activities were found high in several locations. External gamma dose rates estimated from the levels of radionuclides in soil had a range from 49 to 9244 nGy h(-1). The result of gamma dose rate measured at the sampling sites using survey meter showed an excellent correlation with dose rates computed from the natural radionuclides estimated from the soil samples.

A Comparative Analyses of Granulometry, Mineral Composition and Major and Trace Element Concentrations in Soils Commonly Ingested by Humans

PubMed Central

Ngole-Jeme, Veronica M.; Ekosse, Georges-Ivo E.

2015-01-01

This study compared the granulometric properties, mineralogical composition and concentrations of major and trace element oxides of commonly ingested soils (geophagic soil) collected from different countries with a view of understanding how varied they may be in these properties and to understand the possible health implications of ingesting them. Soil samples were collected from three different countries (South Africa, Swaziland and Democratic Republic of Congo (DRC)) and their granulometric properties, concentrations of major and trace element oxides as well as mineralogical composition determined. Differences were observed in the granulometric properties of geophagic soil from the three different countries with most of them having <20% clay content. The soils also showed varied degrees of weathering with values of Chemical Index of Alteration (CIA) and Chemical Index of Weathering (CIW) being between 60% and 99.9% respectively. The mineral assemblages of the soils from South Africa and Swaziland were dominated by the primary minerals quartz and feldspar whereas soils from DRC had more of kaolinite, a secondary mineral than primary minerals. Soils from DRC were associated with silt, clay, Al2O3, and CIA unlike most samples from South Africa which were associated with SiO2, sand, K2O, CaO, and MgO. The soils from Swaziland were closely associated with silt, H2O and Fe2O3(t). These associations reflect the mineralogy of the samples. These soils are not likely to serve as nutrient supplements because of the low concentrations of the nutrient elements contained. The coarse texture of the samples may also result in dental destruction during mastication. Sieving of the soils before ingestion to remove coarse particles is recommended to reduce the potential health threat associated with the ingestion of coarse-textured soils. PMID:26264010

Soil and plant contamination by lead mining in Bellmunt (Western Mediterranean Area)

NASA Astrophysics Data System (ADS)

Bech, Jaume; Duran, Paola; Barceló, Juan; Roca, Núria; Tume, Pedro; Poschenrieder, Charlotte

2010-05-01

Galena has been mined in Bellmunt (Priorat, Western Mediterranean Area) since ancient times until 1972. While sediment pollution originated by the mining activity in the Ebro river passing the region has been investigated (Ferré, 2007), the local impact on soils and plants has received little attention. Here we report the first results on the concentrations of major metal contaminants and antimony in soils and representative plants from 5 selected sites with different pollutant burdens around the mining area. Both total (HNO3, HF, HClO4 digest) and extractable (EDTA) soil concentrations were studied. The range of total and extractable soil values in mgkg-1 is as follows: Sb 9.7-31 and 2.4-7.2; Cu: 89-823 and 20-62; Pb: 19-39 and 18-33; Zn: 318-989 and 79-287 mg•kg-1, respectively). Soils had alkaline pH (7.7-8.2), organic matter contents ranging from 0.8 to 2.4%, and a sandy-loam or a loamy-sand texture. All analysed plant species showed enhanced root and shoot concentrations of Pb, Cu, Zn and Sb when growing on the more polluted soils, and all but one restricted the translocation of metals from roots to shoots exhibiting shoot/root concentration ratios lower than unity. A notably exception was Moricandia moricandioides. This species of the Brassicaceae family exhibited higher Zn concentrations in the shoots than in the roots at all sampling sites yielding shoot/root concentration ratios up to 5.5. This metal accumulation pattern was only observed for Zn and not for other analysed metal contaminants. The concentrations of other, poorly mobile metals, like Pb or Cu were always higher in roots than in shoots (e.g. Pb shoot/root ratios ranged from 0.12 to 0.41). Taking into account the high Pb burden of the soil samples and these low shoot/root Pb ratios, it can be excluded that the particular Zn accumulation pattern of Moricandia moricandioides was biased by soil contamination of shoot samples. To the best of our knowledge, this is the first report of a Zn accumulation behaviour in a Moricandia species. The soil-to-shoot transfer factors (shoot Zn conc/total soil conc.) for this species were, however, relatively low ranging from 0.3 to 1.3. Two main reasons for this could be 1) the fact that real total Zn soil concentrations after HF attack and not pseudototal metal concentrations were analysed in the present study and 2) the relatively high pH of the soils which could considerably hamper Zn bioavailability. Further studies are required to confirm the possible Zn (hyper)accumulator character of Moricandia moricandioides (Boiss.) Heyw. [M. ramburii Webb]. Reference: Ferré, N. 2007 Nivells de metals pesants a la conca Catalana del riu Ebre. Avaluació del risc per la población i l'ecosistema. Universitat Rovira Virgili. ISBN 978-84-691-0371-5. Acknowledgement: Supported by BFU2007-60332/BFI

Effects of disturbance and vegetation type on total and methylmercury in boreal peatland and forest soils.

PubMed

Braaten, Hans Fredrik Veiteberg; de Wit, Heleen A

2016-11-01

Mercury (Hg) concentrations in freshwater fish relates to aquatic Hg concentrations, which largely derives from soil stores of accumulated atmospheric deposition. Hg in catchment soils as a source for aquatic Hg is poorly studied. Here we test if i) peatland soils produce more methylmercury (MeHg) than forest soils; ii) total Hg (THg) concentrations in top soils are determined by atmospheric inputs, while MeHg is produced in the soils; and iii) soil disturbance promotes MeHg production. In two small boreal catchments, previously used in a paired-catchment forest harvest manipulation study, forest soils and peatlands were sampled and analysed for Hg species and additional soil chemistry. In the undisturbed reference catchment, soils were sampled in different vegetation types, of varying productivity as reflected in tree density, where historical data on precipitation and throughfall Hg and MeHg fluxes were available. Upper soil THg contents were significantly correlated to throughfall inputs of Hg, i.e. lowest in the tree-less peatland and highest in the dense spruce forest. For MeHg, top layer concentrations were similar in forest soils and peatlands, likely related to atmospheric input and local production, respectively. The local peatland MeHg production was documented through significantly higher MeHg-to-THg ratios in the deeper soil layer samples. In the disturbed catchment, soils were sampled in and just outside wheeltracks in an area impacted by forest machinery. Here, MeHg concentrations and the MeHg-to-THg ratios in the upper 5 cm were weakly significantly (p = 0.07) and significantly (p = 0.04) different in and outside of the wheeltracks, respectively, suggesting that soil disturbance promotes methylation. Differences in catchment Hg and MeHg streamwater concentrations were not explained by soil Hg and MeHg information, perhaps because hydrological pathways are a stronger determinant of streamwater chemistry than small variations in soil chemistry driven by disturbance and atmospheric inputs of Hg. Copyright © 2016 Elsevier Ltd. All rights reserved.

Farmer data sourcing. The case study of the spatial soil information maps in South Tyrol.

NASA Astrophysics Data System (ADS)

Della Chiesa, Stefano; Niedrist, Georg; Thalheimer, Martin; Hafner, Hansjörg; La Cecilia, Daniele

2017-04-01

Nord-Italian region South Tyrol is Europe's largest apple growing area exporting ca. 15% in Europe and 2% worldwide. Vineyards represent ca. 1% of Italian production. In order to deliver high quality food, most of the farmers in South Tyrol follow sustainable farming practices. One of the key practice is the sustainable soil management, where farmers collect regularly (each 5 years) soil samples and send for analyses to improve cultivation management, yield and finally profitability. However, such data generally remain inaccessible. On this regard, in South Tyrol, private interests and the public administration have established a long tradition of collaboration with the local farming industry. This has granted to the collection of large spatial and temporal database of soil analyses along all the cultivated areas. Thanks to this best practice, information on soil properties are centralized and geocoded. The large dataset consist mainly in soil information of texture, humus content, pH and microelements availability such as, K, Mg, Bor, Mn, Cu Zn. This data was finally spatialized by mean of geostatistical methods and several high-resolution digital maps were created. In this contribution, we present the best practice where farmers data source soil information in South Tyrol. Show the capability of a large spatial-temporal geocoded soil dataset to reproduce detailed digital soil property maps and to assess long-term changes in soil properties. Finally, implication and potential application are discussed.

Confirmation of Soluble Sulfate at the Phoenix Landing Site: Implications for Martian Geochemistry and Habitability

NASA Technical Reports Server (NTRS)

Kounaves, S. P.; Hecht, M. H.; Kapit, J.; Quinn, R. C.; Catling, D. C.; Clark, B. C.; Ming, D. W.; Gospodinova, K.; Hredzak, P.; McElhoney, K.;

Preliminary study of soil permeability properties using principal component analysis

NASA Astrophysics Data System (ADS)

Yulianti, M.; Sudriani, Y.; Rustini, H. A.

2018-02-01

Soil permeability measurement is undoubtedly important in carrying out soil-water research such as rainfall-runoff modelling, irrigation water distribution systems, etc. It is also known that acquiring reliable soil permeability data is rather laborious, time-consuming, and costly. Therefore, it is desirable to develop the prediction model. Several studies of empirical equations for predicting permeability have been undertaken by many researchers. These studies derived the models from areas which soil characteristics are different from Indonesian soil, which suggest a possibility that these permeability models are site-specific. The purpose of this study is to identify which soil parameters correspond strongly to soil permeability and propose a preliminary model for permeability prediction. Principal component analysis (PCA) was applied to 16 parameters analysed from 37 sites consist of 91 samples obtained from Batanghari Watershed. Findings indicated five variables that have strong correlation with soil permeability, and we recommend a preliminary permeability model, which is potential for further development.

Amplicon-Based Sequencing of Soil Fungi from Wood Preservative Test Sites

PubMed Central

Kirker, Grant T.; Bishell, Amy B.; Jusino, Michelle A.; Palmer, Jonathan M.; Hickey, William J.; Lindner, Daniel L.

2017-01-01

Soil samples were collected from field sites in two AWPA (American Wood Protection Association) wood decay hazard zones in North America. Two field plots at each site were exposed to differing preservative chemistries via in-ground installations of treated wood stakes for approximately 50 years. The purpose of this study is to characterize soil fungal species and to determine if long term exposure to various wood preservatives impacts soil fungal community composition. Soil fungal communities were compared using amplicon-based DNA sequencing of the internal transcribed spacer 1 (ITS1) region of the rDNA array. Data show that soil fungal community composition differs significantly between the two sites and that long-term exposure to different preservative chemistries is correlated with different species composition of soil fungi. However, chemical analyses using ICP-OES found levels of select residual preservative actives (copper, chromium and arsenic) to be similar to naturally occurring levels in unexposed areas. A list of indicator species was compiled for each treatment-site combination; functional guild analyses indicate that long-term exposure to wood preservatives may have both detrimental and stimulatory effects on soil fungal species composition. Fungi with demonstrated capacity to degrade industrial pollutants were found to be highly correlated with areas that experienced long-term exposure to preservative testing. PMID:29093702

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kelly, R.F.; Kravchenko, I.I.; Kuharik, J.C.

Widespread use of chromated copper arsenate (CCA) as a wood preservative has led to increasing public concern regarding possible toxic contamination of areas surrounding CCA-treated structures, e.g., decks, playground equipment, etc. Appreciable leaching of arsenic, chromium, and copper into soils adjacent to such structures has been demonstrated via standard techniques of analytical chemistry. The advantages of PIXE [rapid analysis, quick sample turnover, possible lower cost] suggest its application to this area of interest. PIXE studies in our laboratory of CCA-contaminated soil samples show good agreement with previous analyses of As, Cu, Cr, and other heavy-elemental content, with some variability inmore » diffusion rates.« less

Microbial Communities and Functional Genes Associated with Soil Arsenic Contamination and the Rhizosphere of the Arsenic-Hyperaccumulating Plant Pteris vittata L. ▿ †

PubMed Central

Xiong, Jinbo; Wu, Liyou; Tu, Shuxin; Van Nostrand, Joy D.; He, Zhili; Zhou, Jizhong; Wang, Gejiao

2010-01-01

To understand how microbial communities and functional genes respond to arsenic contamination in the rhizosphere of Pteris vittata, five soil samples with different arsenic contamination levels were collected from the rhizosphere of P. vittata and nonrhizosphere areas and investigated by Biolog, geochemical, and functional gene microarray (GeoChip 3.0) analyses. Biolog analysis revealed that the uncontaminated soil harbored the greatest diversity of sole-carbon utilization abilities and that arsenic contamination decreased the metabolic diversity, while rhizosphere soils had higher metabolic diversities than did the nonrhizosphere soils. GeoChip 3.0 analysis showed low proportions of overlapping genes across the five soil samples (16.52% to 45.75%). The uncontaminated soil had a higher heterogeneity and more unique genes (48.09%) than did the arsenic-contaminated soils. Arsenic resistance, sulfur reduction, phosphorus utilization, and denitrification genes were remarkably distinct between P. vittata rhizosphere and nonrhizosphere soils, which provides evidence for a strong linkage among the level of arsenic contamination, the rhizosphere, and the functional gene distribution. Canonical correspondence analysis (CCA) revealed that arsenic is the main driver in reducing the soil functional gene diversity; however, organic matter and phosphorus also have significant effects on the soil microbial community structure. The results implied that rhizobacteria play an important role during soil arsenic uptake and hyperaccumulation processes of P. vittata. PMID:20833780

Biogeography and Metabolic Potential of Soil Microbial Communities Across Local Environmental Gradients Illuminated Through Metagenomics

NASA Astrophysics Data System (ADS)

Sharrar, A.; Diamond, S.; Butterfield, C.; Starr, E.; Thomas, B. C.; Banfield, J. F.

2016-12-01

Soils are extremely heterogeneous and diverse microbial habitats. The distribution of microbes and their metabolic functions in soil is important for carbon and nitrogen cycling and overall ecosystem functioning. Little is known about biogeographical patterns of microbes in soil and how they relate to different environmental gradients. To address this topic, we have obtained metagenomes from 86 soil samples taken at the Eel River Critical Zone Observatory and a nearby meadow in the northern California Angelo Coast Range Reserve over a period of two years. These samples span a variety of environmental parameters, including depth, relief, time since last rainfall, and proximity to root carbon inputs. Phylogenetic diversity and community overlap between these samples was analyzed using ribosomal protein sequence identity and scaffold coverage. Independent of genomic bins, de-replicated ribosomal protein sequences were used to identify thousands of unique organisms between datasets. Despite environmental differences, a subset of these organisms were found in every sample. The dominant phyla in this cosmopolitan subset were Proteobacteria, Actinobacteria, Gemmatimonadetes, Verrucomicrobia, Acidobacteria, and Rokubacteria. Archaea and Nitrospirae were particularly prevalent at depths below 30cm. Patterns of ribosomal protein scaffold coverage across samples was used to compare the similarity of the microbial communities. We found that location was the greatest predictor of community similarity, followed by depth. In a subset of 60 samples taken in the same meadow, sampling plot was a greater predictor of community similarity than time since last rainfall in the same year. In addition, genome-independent analyses revealed differences in the metabolic potential for functions involved in nitrogen and carbon metabolism across environmental gradients. This study will further our understanding of soil biogeography and its relationship to overall biogeochemical cycling.

Phase II. Environmental baseline survey of McCormick Ranch, Kirtland Air Force Base, New Mexico. Part 4. Final report, October 1993-January 1995

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hagaraty, G.; Johnson, J.; Middlebrooks, P.

The Phase II EBS results document the extent of environmental contamination believed to be present on McCormick Ranch. Explosive test areas having the greatest potential for containing soil contaminants were identified using several geophysical survey methods: EM 31 terrain conductivity meter, magnetometer/gradiometer, and ground penetrating radar. From the geophysical surveys, five areas selected to conduct further environmental analysis. A total of 310 soil samples were collected from the five areas and 13 specific high explosive test sites. The samples were screened for semi-volatile organic compounds, PETN, TNT, TNT-degradation products, nitrates and radioactivity. Laboratory analyses were performed and no explosives ormore » degradation products were identified. Semi-volatile organic compounds were in 2 samples, manganese was detected in 3 samples, nitrates were discovered below soil action levels, and radiation levels were below background. Consequently, it is unlikely that significant contamination exists.« less

Phase II. Environmental baseline survey of McCormick Ranch, Kirtland Air Force Base, New Mexico. Part 3. Final report, October 1993-January 1995

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hagaraty, G.; Johnson, J.; Middlebrooks, P.

The Phase II EBS results document the extent of environmental contamination believed to be present on McCormick Ranch. Explosive test areas having the greatest potential for containing soil contaminants were identified using several geophysical survey methods: EM 31 terrain conductivity meter, magnetometer/gradiometer, and ground penetrating radar. From the geophysical surveys, five areas were selected to conduct further environmental analysis. A total of 310 soil samples were collected from the five areas and 13 specific high explosive test sites. The samples were screened for semi-volatile organic compounds, PETN, TNT, TNT-degradation products, nitrates and radioactivity. Laboratory analyses were and no explosives ormore » degradation products were identified. Semi-volatile organic compounds were in 2 samples, manganese was detected in 3 samples, nitrates were discovered below soil action levels, and radiation levels were below background. Consequently, it is unlikely that significant contamination exists.« less

Phase II. Environmental baseline survey of McCormick Ranch, Kirtland Air Force Base, New Mexico. Part 1. Final report, October 1993-January 1995

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hagaraty, G.; Johnson, J.; Middlebrooks, P.

The Phase II EBS results document the extent of environmental contamination believed to be present on McCormick Ranch. Explosive test areas having the greatest potential for containing soil contaminants were identified using several geophysical survey methods: EM 31 terrain conductivity meter, magnetometer/gradiometer, and ground penetrating radar. From the geophysical surveys, five areas were selected to conduct further environmental analysis. A total of 310 soil samples were collected from the and 13 specific high explosive test sites. The samples were screened for semi-volatile organic PETN, TNT, TNT-degradation products, nitrates and radioactivity. Laboratory analyses were and no explosives or degradation products weremore » identified. Semi-volatile organic compounds were in 2 samples, manganese was detected in 3 samples, nitrates were discovered below soil action levels, and radiation levels were below background. Consequently, it is unlikely that significant contamination exists.« less

Phase II. Environmental baseline survey of McCormick Ranch, Kirtland Air Force Base, New Mexico. Part 2. Final report, October 1993-January 1995

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hagaraty, G.; Johnson, J.; Middlebrooks, P.

The Phase II EBS results document the extent of environmental contamination believed to be present on McCormick Ranch. Explosive test areas having the greatest potential for containing soil contaminants were identified using several geophysical survey methods: EM 31 terrain conductivity meter, magnetometer/gradiometer, and ground penetrating radar. From the geophysical surveys, five areas were selected to conduct further environmental analysis. A total of 310 soil samples were collected from the five areas and 13 specific high explosive test sites. The samples were screened for semi-volatile organic compounds, PETN, TNT, TNT-degradation products, nitrates and radioactivity. Laboratory analyses were performed and no explosivesmore » or degradation products were identified. Semi-volatile organic compounds were found in 2 samples, manganese was detected in 3 samples, nitrates were discovered below soil action levels, and radiation levels were below background. Consequently, it is unlikely that significant contamination exists.« less

Phase II. Environmental baseline survey of McCormick Ranch, Kirtland Air Force Base, New Mexico. Part 5. Final report, October 1993-January 1995

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hagaraty, G.; Johnson, J.; Middlebrooks, P.

The Phase II EBS results document the extent of environmental contamination believed to be present on McCormick Ranch. Explosive test areas having the greatest potential for containing soil contaminants were identified using several geophysical survey methods: EM 31 terrain conductivity meter, magnetometer/gradiometer, and ground penetrating radar. From the geophysical surveys, five areas were selected to conduct further environmental analysis. A total of 310 soil samples were collected from the areas and 13 specific high explosive test sites. The samples were screened for semi-volatile organic compounds, PETN, TNT, TNT-degradation products, nitrates and radioactivity. Laboratory analyses were performed and no explosives ormore » degradation products were identified. Semi-volatile organic compounds were in 2 samples, manganese was detected in 3 samples, nitrates were discovered below soil action levels and radiation levels were below background. Consequently, it is unlikely that significant contamination exists.« less

Results from the FIN-2 formal comparison

NASA Astrophysics Data System (ADS)

Connolly, Paul; Hoose, Corinna; Liu, Xiaohong; Moehler, Ottmar; Cziczo, Daniel; DeMott, Paul

2017-04-01

During the Fifth International Ice Nucleation Workshop (FIN-2) at the AIDA Ice Nucleation facility in Karlsruhe, Germany in March 2015, a formal comparison of ice nucleation measurement methods was conducted. During the experiments the samples of ice nucleating particles were not revealed to the instrument scientists, hence this was referred to as a "blind comparison". The two samples used were later revealed to be Arizona Test Dust and an Argentina soil sample. For these two samples seven mobile ice nucleating particle counters sampled directly from the AIDA chamber or from the aerosol preparation chamber at specified temperatures, whereas filter samples were taken for two offline deposition nucleation instruments. Wet suspension methods for determining IN concentrations were also used with 10 different methods employed. For the wet suspension methods experiments were conducted using INPs collected from the air inside the chambers (impinger sampling) and INPs taken from the bulk samples (vial sampling). Direct comparisons of the ice nucleating particle concentrations are reported as well as derived ice nucleation active site densities. The study highlights the difficulties in performing such analyses, but generally indicates that there is reasonable agreement between the wet suspension techniques. It is noted that ice nucleation efficiency derived from the AIDA chamber (quantified using the ice active surface site density approach) is higher than that for the cold stage techniques. This is both true for the Argentina soil sample and, to a lesser extent, for the Arizona Test Dust sample too. Other interesting effects were noted: for the ATD the impinger sampling demonstrated higher INP efficiency at higher temperatures (>255 K) than the vial sampling, but agreed at the lower temperatures (<255K), whereas the opposite was true for the Argentina soil sample. The results are analysed to better understand the performance of the various techniques and to address any size-sorting effects and / or sampling line loses.

Scale and Time Effects in Hydraulic Fracturing.

DTIC Science & Technology

1984-07-01

An experimental study was conducted to determine the effects of scale and time on hydraulic fracturing in compacted samples of Teton Dam silt and...occurrence of hydraulic fracturing . Finite element analyses were used to investigate the possible effects of nonlinear soil behavior. Both experimental and...theoretical studies show that hydraulic fracturing can be initiated by seepage-induced forces without the presence of a preexisting flaw in the soil. (Author)

Phylogenetic and ecological analyses of soil and sporocarp DNA sequences reveal high diversity and strong habitat partitioning in the boreal ectomycorrhizal genus Russula (Russulales; Basidiomycota)

Treesearch

József Geml; Gary A. Laursen; Ian C. Herriott; Jack M. McFarland; Michael G. Booth; Niall Lennon; H. Chad Nusbaum; D. Lee Taylor

2010-01-01

Although critical for the functioning of ecosystems, fungi are poorly known in high-latitude regions. Here, we provide the first genetic diversity assessment of one of the most diverse and abundant ectomycorrhizal genera in Alaska: Russula. We analyzed internal transcribed spacer rDNA sequences from sporocarps and soil samples using phylogenetic...

An in situ method for real-time monitoring of soil gas diffusivity

NASA Astrophysics Data System (ADS)

Laemmel, Thomas; Maier, Martin; Schack-Kirchner, Helmer; Lang, Friederike

2016-04-01

Soil aeration is an important factor for the biogeochemistry of soils. Generally, gas exchange between soil and atmosphere is assumed to be governed by molecular diffusion and by this way fluxes can be calculated using by Fick's Law. The soil gas diffusion coefficient DS represents the proportional factor between the gas flux and the gas concentration gradient in the soil and reflects the ability of the soil to "transport passively" gas through the soil. One common way to determine DS is taking core samples in the field and measuring DS in the lab. Unfortunately this method is destructive and laborious and it can only reflect a small fraction of the whole soil. As a consequence, uncertainty about the resulting effective diffusivity on the profile scale, i.e. the real aeration status remains. We developed a method to measure and monitor DS in situ. The set-up consists of a custom made gas sampling device, the continuous injection of an inert tracer gas and inverse gas transport modelling in the soil. The gas sampling device has seven sampling depths (from 0 to -43 cm of depth) and can be easily installed into vertical holes drilled by an auger, which allows for fast installation of the system. Helium (He) as inert tracer gas was injected continuously at the lower end of the device. The resulting steady state distribution of He was used to deduce the DS depth distribution of the soil. For Finite Element Modeling of the gas-sampling-device/soil system the program COMSOL was used. We tested our new method both in the lab and in a field study and compared the results with a reference lab method using soil cores. DS profiles obtained by our in-situ method were consistent with DS profiles determined based on soil core analyses. Soil gas profiles could be measured with a temporal resolution of 30 minutes. During the field study, there was an important rain event and we could monitor the decrease in soil gas diffusivity in the top soil due to water infiltration. The effect of soil water infiltration deeper into the soil on soil gas diffusivity could be observed during the following hours. Our new DS determination device can be quickly and easily installed and allows for monitoring continuously soil gas transport over a long time. It allows following modifications of soil gas diffusivity due to rain events. In addition it enables the analysis of non-diffusive soil gas transport processes.

Vertical and lateral particle and element fluxes across soil catenas in southern Brazil

NASA Astrophysics Data System (ADS)

Schoonejans, Jerome; Vanacker, Veerle; Opfergelt, Sophie

2016-04-01

At the Earth's surface, mechanical disaggregation and chemical weathering transform bedrock into mobile regolith and soil. Downslope translocation of weathering products by lateral transport of soil particles and elements are determinant for the development of soil catenas. To grasp the rates of soil formation and development along catenas, we need better constraints on the vertical and lateral fluxes of particles and nutrients along hillslopes. Our study aims to analyze soil catena development in a spatio-temporal framework. The data are collected in the central part of the Rio Grande do Sul State in southern Brazil. The sampling area is located on the Serra Geral plateau composed by rhyodacite rocks (˜700 m.a.s.l). The climate is humid subtropical (Cfa), and the natural vegetation is characterized by deciduous tropical forest and native Araucaria angustifolia forests. Two soil catenas with different slope morphology were selected: a steep slope of 190m long with maximum slope angle of 24° , and a gentle one of 140m long with a maximum slope angle of 11° . In total, eight soil profiles were sampled and 67 soil and 8 saprock or bedrock samples have been analysed for total element composition. Bulk densities were determined on undisturbed soil samples. The soil thickness varies along catenas with soil depths of about 90 cm on the ridge top, 30 cm on the convex nose of the steep slope and >2 m on the foot slope. Chemical mass balance techniques are used to constrain chemical weathering intensities (CDF) and absolute chemical mass losses or gains (δj,w). In each one of the eight soil profiles, we notice important absolute chemical mass losses for the most mobile elements (Na, K and Ca). The mass transfer coefficients of Al and Fe do not show a clear pattern, and largely depend on soil depth and position along the soil catena. The weathering intensity of the soil and the absolute chemical mass transfer are correlated with the residence time of the soil. Our data show a systematic increase in chemical weathering intensity with distance from the ridge top.

Community composition of ammonia-oxidizing bacteria and archaea in rice field soil as affected by nitrogen fertilization.

PubMed

Wang, Yanan; Ke, Xiubin; Wu, Liqin; Lu, Yahai

2009-02-01

Little information is available on the ecology of ammonia-oxidizing bacteria (AOB) and archaea (AOA) in flooded rice soils. Consequently, a microcosm experiment was conducted to determine the effect of nitrogen fertilizer on the composition of AOB and AOA communities in rice soil by using molecular analyses of ammonia monooxygenase gene (amoA) fragments. Experimental treatments included three levels of N (urea) fertilizer, i.e. 50, 100 and 150 mgNkg(-1) soil. Soil samples were operationally divided into four fractions: surface soil, bulk soil deep layer, rhizosphere and washed root material. NH(4)(+)-N was the dominant form of N in soil porewater and increased with N fertilization. Cloning and sequencing of amoA gene fragments showed that the AOB community in the rice soil consisted of three major groups, i.e. Nitrosomonas communis cluster, Nitrosospira cluster 3a and cluster 3b. The sequences related to Nitrosomonas were predominant. There was a clear effect of N fertilizer and soil depth on AOB community composition based on terminal restriction fragment length polymorphism fingerprinting. Nitrosomonas appeared to be more abundant in the potentially oxic or micro-oxic fractions, including surface soil, rhizosphere and washed root material, than the deep layer of anoxic bulk soil. Furthermore, Nitrosomonas increased relatively in the partially oxic fractions and that of Nitrosospira decreased with the increasing application of N fertilizer. However, AOA community composition remained unchanged according to the denaturing gradient gel electrophoresis analyses.

Linking spatial patterns of soil redistribution traced with 137Cs and soil nutrients in a Mediterranean mountain agroecosystem (NE Spain)

NASA Astrophysics Data System (ADS)

Quijano, Laura; Gaspar, Leticia; Navas, Ana

2016-04-01

Mediterranean mountain agroecosystems are prone to soil loss mainly due to the accelerated erosion as a consequence of human induced changes from agriculture and grazing practices over the last centuries and the climatic conditions (i.e. irregular and scarce precipitations and drought periods). Soil erosion leads to soil degradation inducing the loss of soil functions. The progressive decline of soil functions thereof soil quality is associated to a decrease of soil productivity and can threat the sustainability of cultivated soils. The use of fallout 137Cs as a soil movement tracer provides useful data to identify areas where loss and gain of 137Cs occurs and that of soil. This study aims to address soil movement and soil nutrient dynamics closely related to the status of soil degradation. A rain-fed cereal field (1.6 ha) representative of Mediterranean mountain agricultural landscapes (42°25'41''N 1°13'8''W) was selected to examine the effects of soil redistribution processes on the spatial variability of soil organic carbon (SOC) and nitrogen (SON) and their relationships with soil properties and topographic characteristics. From the hydrological point of view, the field is isolated due to the effect of landscape features and man-made structures. Climate is continental Mediterranean with an average annual rainfall of 500 mm and soils are Calcisols. The reference inventories of 137Cs and soil nutrients were established from 21 soil samples collected in nearby undisturbed areas under typical Mediterranean vegetation cover. A total of 156 bulk soil samples (30-50 cm depth) and 156 topsoil samples (5 cm) were collected on a 10 m grid. 137Cs and soil nutrients loss and gain areas were identified by comparing the reference inventories with the values of inventories at the sampling points. A new approach to characterize and measure active (ACF) and stable (SCF) carbon fraction contents by using a dry combustion method based on the oxidation temperature of carbon fractions to analyze the SOC pool dynamics is presented in this study. A detailed field topographic survey and mapping of the spatial variability of soil properties and nutrient contents from soil analyses displayed similar spatial patterns of 137Cs and soil nutrients that also were directly and significantly correlated (p≤0.01). As much as 70% of the surface of the study field had lower values of 137Cs inventory indicating a predominance of soil loss linked to a generalized loss of soil nutrients. SOC gain was found in less than 1% of the study field and there was a large loss of SON compared to the undisturbed reference site. Higher and significant (p≤0.01) contents of soil nutrients were found in topsoil samples than in the bulk ones. Furthermore, there was an enrichment of the relative contribution of ACF to total SOC in sampling points where there was a 137Cs gain in both bulk and topsoil samples. Understanding patterns of soil nutrients can be useful for developing and implementing land management strategies to preserve soil quality in Mediterranean agricultural areas.

Determination of Martian soil mineralogy and water content using the Thermal Analyzer for Planetary Soils (TAPS)

NASA Technical Reports Server (NTRS)

Gooding, James L.; Ming, Douglas W.; Allton, Judith H.; Byers, Terry B.; Dunn, Robert P.; Gibbons, Frank L.; Pate, Daniel B.; Polette, Thomas M.

1992-01-01

Physical and chemical interactions between the surface and atmosphere of Mars can be expected to embody a strong cause-and-effect relationship with the minerals comprising the martian regolith. Many of the minerals in soils and sediments are probably products of chemical weathering (involving surface/atmosphere or surface/hydrosphere reactions) that could be expected to subsequently influence the sorption of atmospheric gases and water vapor. Therefore, identification of the minerals in martian surface soils and sediments is essential for understanding both past and present interactions between the Mars surface and atmosphere. Clearly, the most definitive mineral analyses would be achieved with well-preserved samples returned to Earth-based laboratories. In advance of a Mars sample return mission, however, significant progress could be made with in situ experiments that fill current voids in knowledge about the presence or abundance of key soil minerals such as clays (layered-structured silicates), zeolites, and various salts, including carbonates. TAPS is intended to answer that challenge by providing first-order identification of soil and sediment minerals.

Selenium speciation in acidic environmental samples: application to acid rain-soil interaction at Mount Etna volcano.

PubMed

Floor, Geerke H; Iglesías, Mònica; Román-Ross, Gabriela; Corvini, Philippe F X; Lenz, Markus

2011-09-01

Speciation plays a crucial role in elemental mobility. However, trace level selenium (Se) speciation analyses in aqueous samples from acidic environments are hampered due to adsorption of the analytes (i.e. selenate, selenite) on precipitates. Such solid phases can form during pH adaptation up till now necessary for chromatographic separation. Thermodynamic calculations in this study predicted that a pH<4 is needed to prevent precipitation of Al and Fe phases. Therefore, a speciation method with a low pH eluent that matches the natural sample pH of acid rain-soil interaction samples from Etna volcano was developed. With a mobile phase containing 20mM ammonium citrate at pH 3, selenate and selenite could be separated in different acidic media (spiked water, rain, soil leachates) in <10 min with a LOQ of 0.2 μg L(-1) using (78)Se for detection. Applying this speciation analysis to study acid rain-soil interaction using synthetic rain based on H(2)SO(4) and soil samples collected at the flanks of Etna volcano demonstrated the dominance of selenate over selenite in leachates from samples collected close to the volcanic craters. This suggests that competitive behavior with sulfate present in acid rain might be a key factor in Se mobilization. The developed speciation method can significantly contribute to understand Se cycling in acidic, Al/Fe rich environments. Copyright © 2011 Elsevier Ltd. All rights reserved.

The viking biological investigation: preliminary results.

PubMed

Klein, H P; Horowitz, N H; Levin, G V; Oyama, V I; Lederberg, J; Rich, A; Hubbard, J S; Hobby, G L; Straat, P A; Berdahl, B J; Carle, G C; Brown, F S; Johnson, R D

1976-10-01

Three different types of biological experiments on samples of martian surface material ("soil") were conducted inside the Viking lander. In the carbon assimilation or pyrolytic release experiment, (14)CO(2) and (14)CO were exposed to soil in the presence of light. A small amount of gas was found to be converted into organic material. Heat treatment of a duplicate sample prevented such conversion. In the gas exchange experiment, soil was first humidified (exposed to water vapor) for 6 sols and then wet with a complex aqueous solution of metabolites. The gas above the soil was monitored by gas chromatography. A substantial amount of O(2) was detected in the first chromatogram taken 2.8 hours after humidification. Subsequent analyses revealed that significant increases in CO(2) and only small changes in N(2) had also occurred. In the labeled release experiment, soil was moistened with a solution containing several (14)C-labeled organic compounds. A substantial evolution of radioactive gas was registered but did not occur with a duplicate heat-treated sample. Alternative chemical and biological interpretations are possible for these preliminary data. The experiments are still in process, and these results so far do not allow a decision regarding the existence of life on the plonet Mars.

Rare earths and other trace elements in Luna 16 soil.

NASA Technical Reports Server (NTRS)

Helmke, P. A.; Haskin, L. A.

1972-01-01

An analysis has been made of four small samples of material brought to earth by the Luna 16 mission, with the aim to determine rare earths and other trace elements in these samples. The analytical results are tabulated, and the rare earth abundances are compared with the average for chondrites. A comparison is also made with the results of similar analyses of Apollo samples.

Mapping within-field variations of soil organic carbon content using UAV multispectral visible near-infrared images

NASA Astrophysics Data System (ADS)

Gilliot, Jean-Marc; Vaudour, Emmanuelle; Michelin, Joël

2016-04-01

This study was carried out in the framework of the PROSTOCK-Gessol3 project supported by the French Environment and Energy Management Agency (ADEME), the TOSCA-PLEIADES-CO project of the French Space Agency (CNES) and the SOERE PRO network working on environmental impacts of Organic Waste Products recycling on field crops at long time scale. The organic matter is an important soil fertility parameter and previous studies have shown the potential of spectral information measured in the laboratory or directly in the field using field spectro-radiometer or satellite imagery to predict the soil organic carbon (SOC) content. This work proposes a method for a spatial prediction of bare cultivated topsoil SOC content, from Unmanned Aerial Vehicle (UAV) multispectral imagery. An agricultural plot of 13 ha, located in the western region of Paris France, was analysed in April 2013, shortly before sowing while it was still bare soil. Soils comprised haplic luvisols, rendzic cambisols and calcaric or colluvic cambisols. The UAV platform used was a fixed wing provided by Airinov® flying at an altitude of 150m and was equipped with a four channels multispectral visible near-infrared camera MultiSPEC 4C® (550nm, 660nm, 735 nm and 790 nm). Twenty three ground control points (GCP) were sampled within the plot according to soils descriptions. GCP positions were determined with a centimetric DGPS. Different observations and measurements were made synchronously with the drone flight: soil surface description, spectral measurements (with ASD FieldSpec 3® spectroradiometer), roughness measurements by a photogrammetric method. Each of these locations was sampled for both soil standard physico-chemical analysis and soil water content. A Structure From Motion (SFM) processing was done from the UAV imagery to produce a 15 cm resolution multispectral mosaic using the Agisoft Photoscan® software. The SOC content was modelled by partial least squares regression (PLSR) between the laboratory analyses and the multispectral information for the 23 plots. The mean squared error of cross validation (RMSECV) by LOO (Leave One Out) method was 1.97 g of OC per kg of soil. A second correction of the model incorporating the effects of moisture and roughness on reflectance, has improved the quality of the prediction by 18% and a RMSECV of 1.61 g / kg. The model was finally spatialized on the whole plot using ArcGIS® by applying the regression formula on all mosaic pixels. Results are discussed in the light of an additional sampling campaign carried out in October 2015, providing 34 independent samples.

Potential risks of copper, zinc, and cadmium pollution due to pig manure application in a soil-rice system under intensive farming: a case study of Nanhu, China.

PubMed

Shi, Jiachun; Yu, Xiulin; Zhang, Mingkui; Lu, Shenggao; Wu, Weihong; Wu, Jianjun; Xu, Jianming

2011-01-01

Heavy metal (copper [Cu], zinc [Zn], and cadmium [Cd]) pollution of soils from pig manures in soil-rice ( L.) systems under intensive farming was investigated, taking Nanhu, China, as the case study area. Two hundred pig manures and 154 rice straws, brown rice samples, and corresponding surface soil (0-15 cm) samples were collected in paddy fields from 150 farms in 16 major villages within the study area. The mean Cu and Zn concentrations in pig manures consistently exceeded the related standard. About 44 and 60% of soil samples exceed the Chinese Soil Cu and Cd Environmental Quality Standards, respectively. The concentration of Cu, Zn, and Cd in brown rice did not exceed the Chinese Food Hygiene Standard. There was a significant positive correlation between total Cu and Zn contents in soil and application rate of pig manures. Strong correlation was observed between the extractable Cu, Zn, and Cd in soil and the Cu, Zn, and Cd contents in the brown rice. The spatial distribution maps of Cu and Zn concentrations in brown rice, straw, and extractable soil Cu and Zn concentration also showed similar geographical trends. Further analyses on heavy metals loading flux and accumulation rates from pig manure applied suggested that Cu and Cd contents in soil currently have already exceeded the maximum permissible limit, and Zn, if still at current manure application rates, will reach the ceiling concentration limits in 9 yr. This study assists in understanding the risk of heavy metals accumulating from pig manure applications to agricultural soils. Copyright © by the American Society of Agronomy, Crop Science Society of America, and Soil Science Society of America, Inc.

Basic Aspects of Deep Soil Mixing Technology Control

NASA Astrophysics Data System (ADS)

Egorova, Alexandra A.; Rybak, Jarosław; Stefaniuk, Damian; Zajączkowski, Przemysław

2017-10-01

Improving a soil is a process of increasing its physical/mechanical properties without changing its natural structure. Improvement of soil subbase is reached by means of the knitted materials, or other methods when strong connection between soil particles is established. The method of DSM (Deep Soil Mixing) columns has been invented in Japan in 1970s. The main reason of designing cement-soil columns is to improve properties of local soils (such as strength and stiffness) by mixing them with various cementing materials. Cement and calcium are the most commonly used binders. However new research undertaken worldwide proves that apart from these materials, also gypsum or fly ashes can also be successfully implemented. As the Deep Soil Mixing is still being under development, anticipating mechanical properties of columns in particular soils and the usage of cementing materials in formed columns is very difficult and often inappropriate to predict. That is why a research is carried out in order to find out what binders and mixing technology should be used. The paper presents several remarks on the testing procedures related to quality and capacity control of Deep Soil Mixing columns. Soil improvement methods, their advantages and limitations are briefly described. The authors analyse the suitability of selected testing methods on subsequent stages of design and execution of special foundations works. Chosen examples from engineering practice form the basis for recommendations for the control procedures. Presented case studies concerning testing the on capacity field samples and laboratory procedures on various categories of soil-cement samples were picked from R&D and consulting works offered by Wroclaw University of Science and Technology. Special emphasis is paid to climate conditions which may affect the availability of performing and controlling of DSM techniques in polar zones, with a special regard to sample curing.

Application of pyrolysis-gas chromatography/mass spectrometry to study changes in the organic matter of macro- and microaggregates of a Mediterranean soil upon heating.

PubMed

Campo, J; Nierop, K G J; Cammeraat, E; Andreu, V; Rubio, J L

2011-07-29

The heating effect on the soil organic matter (SOM) of a Mediterranean soil was studied in two fractions (macro- and microaggregates) and in two environments (soil under canopy of Quercus coccifera and bare soil between plants). Samples were heated under laboratory conditions at different temperatures (220, 380 and 500°C) to establish their effects on the SOM quality and quantity by comparison with unheated control samples (25°C). The SOM content in the soil under canopy was higher than in the bare one and in the microaggregate fractions than in the macroaggregate ones. Increasing temperatures caused, in general, the decrease of SOM content in both soils as well as in both aggregate classes. The quality of SOM was determined after extraction with 0.1 M NaOH and analysed by pyrolysis-gas chromatography/mass spectrometry (Py-GC/MS). Obtained pyrolysates were characterized by the presence of polyphenols and other aromatic pyrolysis products (lipids, polysaccharides, proteins and lignin derivatives). Some of the products in these control samples, and furthermore the presence of black carbon (BC) markers (e.g. benzene, pyridine and toluene), confirmed the occurrence of past wildfires in the study zone. The composition of the SOM extracted from the soils heated at 220°C, was quite similar to that obtained from unheated soils. The products derived from polysaccharides and lignin, and some coming from polyphenols, were not detected in the pyrolysates of the soil heated at 380 and 500°C. Copyright © 2011 Elsevier B.V. All rights reserved.

The effect of sewage sludge fertilization on the concentration of PAHs in urban soils.

PubMed

Wołejko, Elżbieta; Wydro, Urszula; Jabłońska-Trypuć, Agata; Butarewicz, Andrzej; Łoboda, Tadeusz

2018-01-01

This paper analyses sources of sixteen PAHs - polycyclic aromatic hydrocarbons in urbanized areas by using selected diagnostic ratios. Simultaneously, an attempt was made to determine how sewage sludge changes PAHs content in urbanized areas soils. In the experiment three lawns along the main roads in Bialystok with different traffic intensity, three doses of sewage sludge and two years of study were considered. There was no effect of fertilization with sewage sludge on the sum of 16 PAHs in urban soil samples, nevertheless, the sum of 16 PAHs was reduced from 2.6 in 2011 to 2.3 mg/kg in 2012. Among 16 tested PAHs compounds, benzo[a]pyrene was the most dominant compound in samples collected in both years - about 15% of all PAHs. The results suggest that application of sludge into the soil did not influence the concentration of 2-3-ring, 4-ring and 5-6-ring PAHs. For the objects fertilized with a dose 150.0 Mg/ha, of sludge the total sum of potentially carcinogenic PAHs in the urban soil lowered by approximately 68% in comparison with the control plots. PAHs contamination of the urban soil samples resulted from the influence of coal, petroleum and biomass combustion. Moreover, PAHs can enter soil via at mospheric deposition. Copyright © 2017 Elsevier Ltd. All rights reserved.

Estimating Children's Soil/Dust Ingestion Rates through ...

EPA Pesticide Factsheets

Background: Soil/dust ingestion rates are important variables in assessing children’s health risks in contaminated environments. Current estimates are based largely on soil tracer methodology, which is limited by analytical uncertainty, small sample size, and short study duration. Objectives: The objective was to estimate site-specific soil/dust ingestion rates through reevaluation of the lead absorption dose–response relationship using new bioavailability data from the Bunker Hill Mining and Metallurgical Complex Superfund Site (BHSS) in Idaho, USA. Methods: The U.S. Environmental Protection Agency (EPA) in vitro bioavailability methodology was applied to archived BHSS soil and dust samples. Using age-specific biokinetic slope factors, we related bioavailable lead from these sources to children’s blood lead levels (BLLs) monitored during cleanup from 1988 through 2002. Quantitative regression analyses and exposure assessment guidance were used to develop candidate soil/dust source partition scenarios estimating lead intake, allowing estimation of age-specific soil/dust ingestion rates. These ingestion rate and bioavailability estimates were simultaneously applied to the U.S. EPA Integrated Exposure Uptake Biokinetic Model for Lead in Children to determine those combinations best approximating observed BLLs. Results: Absolute soil and house dust bioavailability averaged 33% (SD ± 4%) and 28% (SD ± 6%), respectively. Estimated BHSS age-specific soil/du

Soil Biogeochemical and Biophysical Footprint of Forest to Pasture Conversion in the Western Pyrenees Mountains, France

NASA Astrophysics Data System (ADS)

Leigh, D.; Gragson, T. L.

2017-12-01

Summits of the humid-temperate western Pyrenees were converted from mixed forests to managed grasslands thousands of years ago, including use of fire. We hypothesize differences in soil chemical and physical traits evolved because of this transformation. Paired forest versus grassland soils were sampled at four separate hillslope sites having a clear boundary between the two vegetation types. Factors of climate, topography, parent material, and time of soil formation were essentially identical in the forests and pastures of each site, but the time of soil under grassland vegetation may have varied. Each paired hillslope site included five core samples from the upper 7.6 cm of the mineral soil within each vegetation type and the A horizon thickness was recorded at each core hole. In addition, one complete soil profile was sampled in each vegetation type at each site, making a total of 20 core samples and 4 complete profiles from each respective vegetation type. Analyses included bulk density, pH, plant-available nutrients, organic matter, fulvic versus humic acids, total carbon and nitrogen, amorphous silica, and charcoal content. Results indicate pastured A horizons are about three times as thick as forested soils, contain more organic matter, and have lower bulk densities. These traits favor much greater infiltration and water holding capacities of the pastured soils, which we validated with saturated hydraulic conductivity tests. Melanization has been more pronounced in the managed pastures, which contain significantly more humic acids than forests. Significantly more charcoal (black carbon) is present in the pastured soils from long-term use of fire, and having implications for sequestration of carbon. Pastures register significantly higher soil magnetic susceptibility than forests, also related to past use of fire as a management tool. Pastures contain greater contents of amorphous silica due to more rapid phytolith production from grasses as opposed to trees. Anthropic manipulation of the biotic factor of pedogenesis has created new soil materials, processes, and functions. Our results indicate better soil quality in pastured soils, counter to stereotypical concepts of soil degradation due to grazing, and having important implications for soil sustainability

X-Ray Diffraction Reference Intensity Ratios of Amorphous and Poorly Crystalline Phases: Implications for CheMin on the Mars Science Laboratory

NASA Technical Reports Server (NTRS)

Morris, R. V.; Achilles, C. N.; Chipera, S. J.; Ming, D. W.; Rampe, E. B.

2013-01-01

The CheMin instrument on the Mars Science Laboratory (MSL) rover Curiosity is an X-ray diffraction (XRD) and X-ray fluorescence (XRF) instrument capable of providing the mineralogical and chemical compositions of rocks and soils on the surface of Mars. CheMin uses a microfocus X-ray tube with a Co target, transmission geometry, and an energy-discriminating X-ray sensitive CCD to produce simultaneous 2-D XRD patterns and energy-dispersive X-ray histograms from powdered samples. Piezoelectric vibration of the cell is used to randomize the sample to reduce preferred orientation effects. Instrument details are provided in [1, 2, 3]. Analyses of rock and soil samples by the Mars Exploration Rovers (MER) show nanophase ferric oxide (npOx) is a significant component of the Martian global soil [4] and is thought to be one of the major contributing phases that the Curiosity rover will encounter if a soil sample is analyzed in Gale Crater. Because of the nature of this material, npOx will likely contribute to an X-ray amorphous or short-order component of a XRD pattern measured by the CheMin instrument.

Determination of consolidation properties using electrical resistivity

NASA Astrophysics Data System (ADS)

Kibria, Golam; Hossain, Sahadat; Khan, Mohammad Sadik

2018-05-01

Electrical conductivity is an indirect method used to evaluate pore-structures and their influence on macro and microscale behavior of soils. Although this method can provide useful information about the consolidation properties of soil samples, insufficient studies have been conducted to identify correlations between electrical and consolidation properties. The current study presents electrical resistivity responses of clayey samples at different consolidation stages. The consolidation properties of four soil specimens were measured in conjunction with electrical conductivity. Scanning electron microscope (SEM) analyses were performed on soil samples before and after consolidation to identify the changes in fabric morphology due to the application of loads. It was observed that the electrical conductivity of samples decreased with the increase of pressure, and the trends of variations were similar to e vs. logP curves. Although a linear correlation exists between electrical conductivity and void ratio, the relationship depends on the structural changes in clay particles. Therefore, changes in fabric structures were analyzed using SEM images, and results showed that the aspect ratio of the particles increased as much as 18.3% after consolidation. Based on the investigation, the coefficient of consolidations and one-dimensional strain were determined using electrical resistivity measurements.

ESEM results and changes in wettability patterns within soil: three years irrigation with slightly-salted water

NASA Astrophysics Data System (ADS)

Valdes-Abellan, Javier; Candela, Lucila; Medero, Gabriela; Buckman, Jim; Hasnayn, Mohammad M.

2015-04-01

Impacts on soil and aquifer media from the use of non-conventional water (treated wastewater-TWW, desalted) for irrigation have been widely studied in the last years . A number of contributions have focused on the impacts derived from the use of TWW (Assouline and Narkis, 2013; Lahav et al., 2010; Xu et al., 2010). Changes in soil hydraulic conductivity and clogging processes have been studied in laboratory experiments from soil columns (Lado and Ben-Hur, 2010) and at field scale (Costa, 1999; Minhas et al., 1994). Irrigation with non-conventional water may also lead to the occurrence of contaminants, a major current environmental concern (Valdes-Abellan et al., 2013). Previous studies have considered impacts in a uniform soil media pore structure; less attention has been paid at a microscopic scale and the influence that high-salinity water may have on wettability of soil. Environmental scanning electron microscopy (ESEM) is a useful technique to be applied in soil science to analyse microscopic changes in soil structure or soil wetting patterns. Research applying this technology for wet systems (Donald, 1998) or porous media (Ali et al., 1995) is available, however as far as we know research on soil impacts due to long term irrigation with saline or non-conventional water are much less common. The dynamic mode of the ESEM allows changes of samples from wet to dry by modifying the water vapour pressure and to observe the wetting and drying patterns and interactions between the solid and liquid phase in the soil (Lourenço et al., 2008). Preliminary results of the study at a microscopic scale of soil samples collected before and after three year irrigation with slightly salted water in an experimental plot setup in semi-arid climatic conditions (Alicante, SE Spain) are presented. We will show the micro-structure of soil and undertake a preliminary investigation of wetting and drying of samples using ESEM techniques Differences in the water vapour pressure value at which complete saturation is achieved was detected, being lower in the 3-years irrigated samples compared with the initial ones. Besides, velocity in which saturation took place was different: initial samples saturation process were developed very quickly, as triggered by a critical shift in the water vapour pressure value and much gradual process were develop in the 3-years irrigated sample when saturation started earlier.

Geophagy practices and the content of chemical elements in the soil eaten by pregnant women in artisanal and small scale gold mining communities in Tanzania

PubMed Central

2014-01-01

Background Geophagy, a form of pica, is the deliberate consumption of soil and is relatively common across Sub-Saharan Africa. In Tanzania, pregnant women commonly eat soil sticks sold in the market (pemba), soil from walls of houses, termite mounds, and ground soil (kichuguu). The present study examined geophagy practices of pregnant women in a gold mining area of Geita District in northwestern Tanzania, and also examined the potential for exposure to chemical elements by testing soil samples. Method We conducted a cross sectional study using a convenience sample of 340 pregnant women, ranging in age from 15–49 years, who attended six government antenatal clinics in the Geita District, Tanzania. Structured interviews were conducted in June-August, 2012, to understand geophagy practices. In addition, soil samples taken from sources identified by pregnant women practicing geophagy were analysed for mineral element content. Results Geophagy was reported by 155 (45.6%) pregnant women with 85 (54.8%) initiating the practice in the first trimester. A total of 101 (65%) pregnant women reported eating soil 2 to 3 times per day while 20 (13%) ate soil more than 3 times per day. Of 155 pregnant women 107 (69%) bought pemba from local shops, while 48 (31%) consumed ground soil kichuguu. The estimated mean quantity of soil consumed from pemba was 62.5 grams/day. Arsenic, chromium, copper, iron, manganese, nickel and zinc levels were found in both pemba and kichuguu samples. Cadmium and mercury were found only in the kichuguu samples. Based on daily intake estimates, arsenic, copper and manganese for kichuguu and copper and manganese for pemba samples exceed the oral Minimum Risk Levels designated by the U.S. Agency for Toxic Substance and Disease Registry. Conclusion Almost 50% of participants practiced geophagy in Geita District consistent with other reports from Africa. Both pemba and kichuguu contained chemical elements at varying concentration, mostly above MRLs. As such, pregnant women who eat soil in Geita District are exposed to potentially high levels of chemical elements, depending upon frequency of consumption, daily amount consumed and the source location of soil eaten. PMID:24731450

GEMAS: Geochemical distribution of iodine in European agricultural soil

NASA Astrophysics Data System (ADS)

Birke, Manfred; Reimann, Clemens; Ladenberger, Anna; Négrel, Philippe; Rauch, Uwe; Demetriades, Alecos; Korte, Frank; Dinelli, Enrico

2017-04-01

Iodine concentrations are reported for the < 2 mm fraction of soil samples from agricultural land (Ap, 0-20 cm, N=2213) in 33 European countries, covering 5.6 million km2 at a sample density of 1 sample per 2500 km2. The analyses were carried out by ED-XRFS (energy dispersive X-ray fluorescence spetrometry). The European median I concentration is 2.70 mg/kg in agricultural soil (including eastern Ukraine), with a range of < 0.5 to 317 mg I/kg. Only 2.5 % of the Ap samples returned results below detection for I. A comparison of the map of the measured I concentrations with that of the clr-transformed data provides additional information about sources and processes influencing the I distribution in agricultural soils at the European scale. The spatial distribution patterns of I in the Ap samples are mainly governed by climate, soil formation processes, and geology (parent material, in some cases mineralisation). The distribution of anomalous I concentrations is likely a reflection of I input from atmospheric and marine sources, as well as the accumulation of I as a result of sorption on organic material. Across Europe, high I areas correlate well with soil with elevated TOC values. This is particularly evident for the western coastal areas of Ireland, UK, Norway, Galicia and France, where the organic matter content in the soil is generally high. The continuous supply of I from sea spray represents a potential source for high and elevated I concentrations. In the coastal zones of SE Spain, SE Ukraine and SW Croatia the I concentration in Ap samples is usually high. Along the eastern Adriatic coast as well as in South-East Ukraine and in the Crimea the elevated and anomalous I concentrations correspond well with the distribution of terra rossa soils developed on karst and organic-rich soils (black soil). In SE Spain the I enriched soils are most likely related to the occurrence of evaporites. The comparison of I background values (medians) based on the parent materials demonstrates a higher I content in soils over limestone and shale. Iodine-low soil areas (< 1.5 mg I/kg) correspond well with sandy deposits (East Germany, Poland, Lithuania and Latvia), sedimentary rocks (central Iberian Peninsula) and glacial and aeolian deposits (NW Ukraine).

Biochar in vineyards: impact on soil quality and crop yield four years after the application

NASA Astrophysics Data System (ADS)

Ferreira, Carla; Verheijen, Frank; Puga, João; Keizer, Jacob; Ferreira, António

2017-04-01

Biochar is a recalcitrant organic carbon compound, created by biomass heating at high temperatures (300-1000°C) under low oxygen concentrations. Biochar application to agricultural soils has received increasing attention over the last years, due to its climate change mitigation and adaptation potential and reported improved soil properties and functions relevant to agronomic and environmental performance. Reported impacts are linked with increased cation exchange capacity, enhanced nutrient and water retention, and positive influences on soil microbial communities, which influence crop yields. Nevertheless, few studies have focused on mid-to-long term impacts of biochar application. This study investigated the impact of biochar on soil quality and crop yield four years after biochar application in a vineyard in North-Central Portugal. The site has a Mediterranean climate with a strong Atlantic Ocean influence, with mean annual rainfall and temperature of 1100 mm and 15°C, respectively. The soil is a relatively deep ( 80cm) sandy loam Cambisol, with gentle slopes (3°). The experimental design included three treatments: (i) control, without biochar; (ii) high biochar application rate (40 ton/ha); and (iii) biochar compost (40 ton/ha, 10% biochar). Three plots per treatment (2m×3m) were installed in March 2012, using a mini-rotavator (0-15cm depth). In May 2016, soil quality was also assessed through soil surveys and sampling. Penetration resistance was performed at the soil surface with a pocket penetrometer, and soil surface sampling rings were used for bulk density analyses (100 cm3). Bulked soil samples (0-30 cm) were collected in each plot for aggregate stability, microbial biomass (by chloroform fumigation extraction) and net mineralization rate (through photometric determination of non-incubated and incubated samples). Decomposition rate and litter stabilisation was assessed over a 3-month period through the Tea Bag Index (Keuskamp et al., 2013). The number, type and biomass of earthworms was recorded in each plot, at the soil surface (through excavation, 30cm×30cm×30cm) and sub-surface (using a mustard-tap water solution in the excavated hole). Crop yield was evaluated during harvesting (August 2016), through the number and weight of grape clusters. The potential impact of biochar on grape quality was investigated by total acidity, pH, potential alcoholic strength and total sugar in must analyses. Four years after the application, plots with high biochar showed lowest soil resistance, slightly lower bulk density, higher crop yield and must quality, than control plots. However, the soil of biochar plots also displayed slightly lower aggregate stability, microbial biomass, number and biodiversity of earthworms, although higher net-N mineralization, decomposition rate and litter stabilization. Plots with biochar and compost showed lowest earthworms, decomposition rate and litter stabilization, but highest crop yield that the other two treatments. Nevertheless, minor differences between three treatment plots suggest that potential impacts of biochar on soil quality and crop yield may persist during a relatively short period.

Non-isothermal infiltration and tracer transport experiments on large soil columns

NASA Astrophysics Data System (ADS)

Sobotkova, Martina; Snehota, Michal; Cejkova, Eva; Tesar, Miroslav

2016-04-01

Isothermal and non-isothermal infiltration experiments were carried out in the laboratory on large undisturbed soil columns (19 cm in diameter, 25 cm high) taken at the experimental catchments Roklan (Sumava Mountains, Czech Republic) and Uhlirska (Jizera Mountains, Czech republic). The aim of the study was twofold. The first goal was to obtain water flow and heat transport data for indirect parameter estimation of thermal and hydraulic properties of soils from two sites by inverse modelling. The second aim was to investigate the extent of impact of the temperature on saturated hydraulic conductivity (Ksat) and dispersity of solute transport. The temperature of infiltrating water in isothermal experiment (20 °C) was equal to the initial temperature of the sample. For non-isothermal experiment water temperature was 5°C, while the initial temperature of the sample was 20°C as in previous case. The experiment was started by flooding the sample surface. Then water level was maintained at constant level throughout the infiltration run using the optical sensor and peristaltic pump. Concentration pulse of deuterium was applied at the top of the soil sample, during the steady state flow. Initial pressure head in the sample was close to field capacity. Two tensiometers and two temperature sensors were inserted in the soil sample in two depths (9 and 15 cm below the top of the sample). Two additional temperature sensors monitored the temperature entering and leaving the samples. Water drained freely through the perforated plate at the bottom of sample by gravity. Inflow and outflow water flux densities, water pressure heads and soil temperatures were monitored continuously during experiments. Effluent was sampled in regular time intervals and samples were analysed for deuterium concentrations by laser spectroscopy to develop breakthrough curves. The outcome of experiments are the series of measured water fluxes, pressure heads and temperatures ready for inverse modelling by dual permeability. The saturated hydraulic conductivity of soil columns was higher in the case of higher temperature of flowing water. The change was however not proportional to Ksat change induced by temperature change of viscosity only.

Soil N and C Geography of the Salmon River Watershed and the Oregon Coast

NASA Astrophysics Data System (ADS)

Kern, J. S.; Compton, J. E.; Johnson, M. G.

2003-12-01

Diverse soil and geology influence the rich terrestrial and aquatic biota of the Oregon Coast. We characterized the spatial patterns of soil organic C (SOC) and N by assembling county and forest soil surveys combined with new fieldwork, and analyses from sampled soils. The headlands have maximum SOC and N where wind deposited volcanic soil is coupled with a cool, moist climate. The SOC and N decreases inland in similar soils that have a less marine climate influence. The underlying geology (basalt or sedimentary rock) had no affect in SOC and N. The remainder of the watershed has less SOC and N depending on rock content and soil depth which were affected by lithology as well as microclimate, and tree stand history. Extrapolating SOC and N trends to the region provides information for an area with no significant N deposition from air pollution.

Effects of prescribed fire for pasture management on soil organic matter and biological properties: A 1-year study case in the Central Pyrenees.

PubMed

Girona-García, Antonio; Badía-Villas, David; Martí-Dalmau, Clara; Ortiz-Perpiñá, Oriol; Mora, Juan Luis; Armas-Herrera, Cecilia M

2018-03-15

Prescribed burning has been readopted in the last decade in the Central Pyrenees to stop the regression of subalpine grasslands in favour of shrublands, dominated among others by Echinospartum horridum (Vahl) Rothm. Nevertheless, the effect of this practice on soil properties is uncertain. The aim of this work was to analyse the effects of these burnings on topsoil organic matter and biological properties. Soil sampling was carried out in an autumnal prescribed fire in Buisán (NE-Spain, November 2015). Topsoil was sampled at 0-1cm, 1-2cm and 2-3cm depth in triplicate just before (U), ~1h (B0), 6months (B6) and 12months (B12) after burning. We analysed soil total organic C (TOC), total nitrogen (TN), microbial biomass C (C mic ), soil respiration (SR) and β-D-glucosidase activity. A maximum temperature of 438°C was recorded at soil surface while at 1cm depth only 31°C were reached. Burning significantly decreased TOC (-52%), TN (-44%), C mic (-57%), SR (-72%) and β-D-glucosidase (-66%) at 0-1cm depth while SR was also reduced (-45%) at 1-2cm depth. In B6 and B12, no significant changes in these properties were observed as compared to B0. It can be concluded that the impact of prescribed burning has been significant and sustained over time, although limited to the first two topsoil centimetres. Copyright © 2017 Elsevier B.V. All rights reserved.

Predicting Soil Organic Carbon and Total Nitrogen in the Russian Chernozem from Depth and Wireless Color Sensor Measurements

NASA Astrophysics Data System (ADS)

Mikhailova, E. A.; Stiglitz, R. Y.; Post, C. J.; Schlautman, M. A.; Sharp, J. L.; Gerard, P. D.

2017-12-01

Color sensor technologies offer opportunities for affordable and rapid assessment of soil organic carbon (SOC) and total nitrogen (TN) in the field, but the applicability of these technologies may vary by soil type. The objective of this study was to use an inexpensive color sensor to develop SOC and TN prediction models for the Russian Chernozem (Haplic Chernozem) in the Kursk region of Russia. Twenty-one dried soil samples were analyzed using a Nix Pro™ color sensor that is controlled through a mobile application and Bluetooth to collect CIEL*a*b* (darkness to lightness, green to red, and blue to yellow) color data. Eleven samples were randomly selected to be used to construct prediction models and the remaining ten samples were set aside for cross validation. The root mean squared error (RMSE) was calculated to determine each model's prediction error. The data from the eleven soil samples were used to develop the natural log of SOC (lnSOC) and TN (lnTN) prediction models using depth, L*, a*, and b* for each sample as predictor variables in regression analyses. Resulting residual plots, root mean square errors (RMSE), mean squared prediction error (MSPE) and coefficients of determination ( R 2, adjusted R 2) were used to assess model fit for each of the SOC and total N prediction models. Final models were fit using all soil samples, which included depth and color variables, for lnSOC ( R 2 = 0.987, Adj. R 2 = 0.981, RMSE = 0.003, p-value < 0.001, MSPE = 0.182) and lnTN ( R 2 = 0.980 Adj. R 2 = 0.972, RMSE = 0.004, p-value < 0.001, MSPE = 0.001). Additionally, final models were fit for all soil samples, which included only color variables, for lnSOC ( R 2 = 0.959 Adj. R 2 = 0.949, RMSE = 0.007, p-value < 0.001, MSPE = 0.536) and lnTN ( R 2 = 0.912 Adj. R 2 = 0.890, RMSE = 0.015, p-value < 0.001, MSPE = 0.001). The results suggest that soil color may be used for rapid assessment of SOC and TN in these agriculturally important soils.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Miranda, J.; Calva-Vasquez, G.; Solis, C.

Particle induced X-ray emission (PIeXE) and Rutherford backscattering (RBS) elemental analyses of tree rings and soils from forests around the Mexico City Metropolitan Area (MCMA) were performed. The aim was to estimate the impact of pollution on the forests. Cores from Pinus montezumae and Abies religiosa trees, in four forests around the MCMA (Desierto de los Leones, Iztapopocatepetl, Villa del Carbon and Zoquiapan) and a reference site (El Chico). Differences were observed in samples from the different forests, showing higher values in the areas closest to the MCMA. A correlation of several elements with ring width was found using clustermore » analysis. Additionally, soil analyses from different depths in the forests were carried out, trying to relate the elemental concentrations measured in the tree rings with cation mobility. In this case, samples taken in 1993 and 1999 were analyzed, showing elemental mobility to the various depths.« less

Prediction of hydrocarbon surface seepage potential using infiltrometer data

NASA Astrophysics Data System (ADS)

Connors, J. J.; Jackson, J. L.; Engle, R. A.; Connors, J. L.

2017-12-01

Environmental regulations addressing above-ground storage tank (AST) spill control activities typically require owners/operators to demonstrate that local soil permeability values are low enough to adequately contain released liquids while emergency-response procedures are conducted. Frequently, geotechnical borings and soil samples/analyses, and/or monitoring well slug-test analyses, are used to provide hydraulic conductivity data for the required calculations. While these techniques are useful in assessing hydrological characteristics of the subsurface, they do not always assess the uppermost surface soil layer, where the bulk of the containment can occur. This layer may have been subject to long-term permeability-reduction by activities such as compaction by vehicular and foot traffic, micro-coatings by hydrophobic pollutants, etc. This presentation explores the usefulness of dual-ring infiltrometers, both in field and bench-scale tests, to rapidly acquire actual hydraulic conductivity values of surficial soil layers, which can be much lower than subsurface values determined using more traditional downhole geotechnical and hydrogeological approaches.

Spatial variability of soil available phosphorous and potassium at three different soils located in Pannonian Croatia

NASA Astrophysics Data System (ADS)

Bogunović, Igor; Pereira, Paulo; Đurđević, Boris

2017-04-01

Information on spatial distribution of soil nutrients in agroecosystems is critical for improving productivity and reducing environmental pressures in intensive farmed soils. In this context, spatial prediction of soil properties should be accurate. In this study we analyse 704 data of soil available phosphorus (AP) and potassium (AK); the data derive from soil samples collected across three arable fields in Baranja region (Croatia) in correspondence of different soil types: Cambisols (169 samples), Chernozems (131 samples) and Gleysoils (404 samples). The samples are collected in a regular sampling grid (distance 225 x 225 m). Several geostatistical techniques (Inverse Distance to a Weight (IDW) with the power of 1, 2 and 3; Radial Basis Functions (RBF) - Inverse Multiquadratic (IMT), Multiquadratic (MTQ), Completely Regularized Spline (CRS), Spline with Tension (SPT) and Thin Plate Spline (TPS); and Local Polynomial (LP) with the power of 1 and 2; two geostatistical techniques -Ordinary Kriging - OK and Simple Kriging - SK) were tested in order to evaluate the most accurate spatial variability maps using criteria of lowest RMSE during cross validation technique. Soil parameters varied considerably throughout the studied fields and their coefficient of variations ranged from 31.4% to 37.7% and from 19.3% to 27.1% for soil AP and AK, respectively. The experimental variograms indicate a moderate spatial dependence for AP and strong spatial dependence for all three locations. The best spatial predictor for AP at Chernozem field was Simple kriging (RMSE=61.711), and for AK inverse multiquadratic (RMSE=44.689). The least accurate technique was Thin plate spline (AP) and Inverse distance to a weight with a power of 1 (AK). Radial basis function models (Spline with Tension for AP at Gleysoil and Cambisol and Completely Regularized Spline for AK at Gleysol) were the best predictors, while Thin Plate Spline models were the least accurate in all three cases. The best interpolator for AK at Cambisol was the local polynomial with the power of 2 (RMSE=33.943), while the least accurate was Thin Plate Spline (RMSE=39.572).

Comparative statistical analysis of chrome and vegetable tanning effluents and their effects on related soil.

PubMed

Tariq, Saadia R; Shah, Munir H; Shaheen, Nazia

2009-09-30

Two tanning units of Pakistan, namely, Kasur and Mian Channun were investigated with respect to the tanning processes (chrome and vegetable, respectively) and the effects of the tanning agents on the quality of soil in vicinity of tanneries were evaluated. The effluent and soil samples from 16 tanneries each of Kasur and Mian Channun were collected. The levels of selected metals (Na, K, Ca, Mg, Fe, Cr, Mn, Co, Cd, Ni, Pb and Zn) were determined by using flame atomic absorption spectrophotometer under optimum analytical conditions. The data thus obtained were subjected to univariate and multivariate statistical analyses. Most of the metals exhibited considerably higher concentrations in the effluents and soils of Kasur compared with those of Mian Channun. It was observed that the soil of Kasur was highly contaminated by Na, K, Ca and Mg emanating from various processes of leather manufacture. Furthermore, the levels of Cr were also present at much enhanced levels than its background concentration due to the adoption of chrome tanning. The levels of Cr determined in soil samples collected from the vicinity of Mian Channun tanneries were almost comparable to the background levels. The soil of this city was found to have contaminated only by the metals originating from pre-tanning processes. The apportionment of selected metals in the effluent and soil samples was determined by a multivariate cluster analysis, which revealed significant differences in chrome and vegetable tanning processes.

Spatial distribution of soil contamination by Toxoplasma gondii in relation to cat defecation behaviour in an urban area.

PubMed

Afonso, Eve; Lemoine, Mélissa; Poulle, Marie-Lazarine; Ravat, Marie-Caroline; Romand, Stéphane; Thulliez, Philippe; Villena, Isabelle; Aubert, Dominique; Rabilloud, Muriel; Riche, Benjamin; Gilot-Fromont, Emmanuelle

2008-07-01

In urban areas, there may be a high local risk of zoonosis due to high densities of stray cat populations. In this study, soil contamination by oocysts of Toxoplasma gondii was searched for, and its spatial distribution was analysed in relation to defecation behaviour of cats living in a high-density population present in one area of Lyon (France). Sixteen defecation sites were first identified. Cats were then repeatedly fed with marked food and the marked faeces were searched for in the defecation sites. Of 260 markers, 72 were recovered from 24 different cats. Defecation sites were frequented by up to 15 individuals. Soil samples were also examined in order to detect the presence of T. gondii using real-time PCR. The entire study area was then sampled according to cat density and vegetation cover type. Only three of 55 samples were positive and all came from defecation sites. In a second series of observations, 16 defecation sites were sampled. Eight of 62 samples tested positive, originating in five defecation sites. Laboratory experiments using experimental seeding of soil showed that the inoculated dose that can be detected in 50% of assays equals 100-1000oocysts/g, depending on the strain. This study shows that high concentrations of oocysts can be detected in soil samples using molecular methods and suggests that spatial distribution of contamination areas is highly heterogeneous. Positive samples were only found in some of the defecation sites, signifying that at-risk points for human and animal infection may be very localised.

Geometric factor and influence of sensors in the establishment of a resistivity-moisture relation in soil samples

NASA Astrophysics Data System (ADS)

López-Sánchez, M.; Mansilla-Plaza, L.; Sánchez-de-laOrden, M.

2017-10-01

Prior to field scale research, soil samples are analysed on a laboratory scale for electrical resistivity calibrations. Currently, there are a variety of field instruments to estimate the water content in soils using different physical phenomena. These instruments can be used to develop moisture-resistivity relationships on the same soil samples. This assures that measurements are performed on the same material and under the same conditions (e.g., humidity and temperature). A geometric factor is applied to the location of electrodes, in order to calculate the apparent electrical resistivity of the laboratory test cells. This geometric factor can be determined in three different ways: by means of the use of an analytical approximation, laboratory trials (experimental approximation), or by the analysis of a numerical model. The first case, the analytical approximation, is not appropriate for complex cells or arrays. And both, the experimental and numerical approximation can lead to inaccurate results. Therefore, we propose a novel approach to obtain a compromise solution between both techniques, providing a more precise determination of the geometrical factor.

Plutonium isotopes in the Hungarian environment.

PubMed

Varga, Beata; Tarján, Sandor; Vajda, Nora

2008-04-01

More than 50 soil samples were analysed from different parts of the country, the activity concentration of 239+240Pu was in the range of 0.01-0.84 Bq/kg dry soil with the average of 0.10 Bq/kg. 238Pu could be detected only in few moss samples and 238Pu/239+240Pu ratio determines the origin of plutonium. 241Pu was determined by liquid scintillation spectrometry. The activity concentration of this isotope in the soil is between 0.04 and 3.74 Bq/kg with the average of 0.82 Bq/kg, while in the moss is also similar 0.01-2.07 Bq/kg fresh mass with the average of 0.43 Bq/kg. Significant difference could not be observed between the different types of soils occurring in the country, but the results could be sorted according to the sampling carried out on undisturbed or cultivated area. The isotope ratios 241Pu/239+240Pu prove that the origin of the plutonium in Hungary is the global fallout determined by the atmospheric nuclear weapon tests.

Evaluation of soil water stable isotope analysis by H2O(liquid)-H2O(vapor) equilibration method

NASA Astrophysics Data System (ADS)

Gralher, Benjamin; Stumpp, Christine

2014-05-01

Environmental tracers like stable isotopes of water (δ18O, δ2H) have proven to be valuable tools to study water flow and transport processes in soils. Recently, a new technique for soil water isotope analysis has been developed that employs a vapor phase being in isothermal equilibrium with the liquid phase of interest. This has increased the potential application of water stable isotopes in unsaturated zone studies as it supersedes laborious extraction of soil water. However, uncertainties of analysis and influencing factors need to be considered. Therefore, the objective of this study was to evaluate different methodologies of analysing stable isotopes in soil water in order to reduce measurement uncertainty. The methodologies included different preparation procedures of soil cores for equilibration of vapor and soil water as well as raw data correction. Two different inflatable sample containers (freezer bags, bags containing a metal layer) and equilibration atmospheres (N2, dry air) were tested. The results showed that uncertainties for δ18O were higher compared to δ2H that cannot be attributed to any specific detail of the processing routine. Particularly, soil samples with high contents of organic matter showed an apparent isotope enrichment which is indicative for fractionation due to evaporation. However, comparison of water samples obtained from suction cups with the local meteoric water line indicated negligible fractionation processes in the investigated soils. Therefore, a method was developed to correct the raw data reducing the uncertainties of the analysis.. We conclude that the evaluated method is advantageous over traditional methods regarding simplicity, resource requirements and sample throughput but careful consideration needs to be made regarding sample handling and data processing. Thus, stable isotopes of water are still a good tool to determine water flow and transport processes in the unsaturated zone.

Assessment of soil and water contaminants from selected locations in and near the Idaho Army National Guard Orchard Training Area, Ada County, Idaho, 2001-2003

USGS Publications Warehouse

Parliman, D.J.

2004-01-01

In 2001, the National Guard Bureau and the U.S. Geological Survey began a project to compile hydrogeologic data and determine presence or absence of soil, surface-water, and ground-water contamination at the Idaho Army National Guard Orchard Training Area in southwestern Idaho. Between June 2002 and April 2003, a total of 114 soil, surface-water, ground-water, precipitation, or dust samples were collected from 68 sample sites (65 different locations) in the Orchard Training Area (OTA) or along the vehicle corridor to the OTA. Soil and water samples were analyzed for concentrations of selected total trace metals, major ions, nutrients, explosive compounds, semivolatile organics, and petroleum hydrocarbons. Water samples also were analyzed for concentrations of selected dissolved trace metals and major ions. Distinguishing naturally occurring large concentrations of trace metals, major ions, and nutrients from contamination related to land and water uses at the OTA was difficult. There were no historical analyses for this area to compare with modern data, and although samples were collected from 65 locations in and near the OTA, sampled areas represented only a small part of the complex OTA land-use areas and soil types. For naturally occurring compounds, several assumptions were made?anomalously large concentrations, when tied to known land uses, may indicate presence of contamination; naturally occurring concentrations cannot be separated from contamination concentrations in mid- and lower ranges of data; and smallest concentrations may represent the lowest naturally occurring range of concentrations and (or) the absence of contaminants related to land and water uses. Presence of explosive, semivolatile organic (SVOC), and petroleum hydrocarbon compounds in samples indicates contamination from land and water uses. In areas along the vehicle corridor and major access roads within the OTA, most trace metal, major ion, and nutrient concentrations in soil samples were not in the upper 10th percentile of data, but concentrations of 25 metals, ions, or nutrients were in the upper 10th percentile in a puddle sample near the heavy equipment maneuvering area, MPRC-H. The largest concentrations of tin, ammonia, and nitrite plus nitrate (as nitrogen) in water from the OTA were detected in a sample from this puddle. Petroleum hydrocarbons were the most common contaminant, detected in all soil and surface-water samples. An SVOC, bis (2-ethylhexyl) phthalate, a plasticizer, was detected at a site along the vehicle corridor. In Maneuver Areas within the OTA, many soil samples contained at least one trace metal, major ion, or nutrient in the upper 10th percentile of data, and the largest concentrations of cobalt, iron, mercury, titanium, sodium, ammonia, or total phosphorus were detected in 6 of 13 soil samples outside the Tadpole Lake area. The largest concentrations of aluminum, arsenic, beryllium, nickel, selenium, silver, strontium, thallium, vanadium, chloride, potassium, sulfate, and nitrite plus nitrate were detected in soil samples from the Tadpole Lake area. Water from Tadpole Lake contained the largest total concentrations of 19 trace metals, 4 major ions, and 1 nutrient. Petroleum hydrocarbons were detected in 5 soil samples and water from Tadpole Lake. SVOCs related to combustion of fuel or plasticizers were detected in 1 soil sample. Explosive compounds were detected in 1 precipitation sample.In the Impact Area within the OTA, most soil samples contained at least one trace metal, major ion, or nutrient in the upper 10th percentile of data, and the largest concentrations of barium, chromium, copper, manganese, lead, or orthophosphate were detected in 6 of the 18 soil samples. Petroleum hydrocarbons were detected in 4 soil samples, SVOCs in 6 samples, and explosive compounds in 4 samples. In the mobilization and training equipment site (MATES) compound adjacent to the OTA, all soil and water samples contained at lea

Employing a portable X-Ray fluorescence (P-XRF) analyser and GIS to identify and map heavy metal pollution in soils of a traditional bonfire site

NASA Astrophysics Data System (ADS)

Dao, Ligang; Zhang, Chaosheng; Morrison, Liam

2010-05-01

Soils in the vicinity of bonfires are recipients of metal contaminants from burning of metal-containing materials. In order to better understand the impacts of bonfires on soils, a total of 218 surface soil samples were collected from a traditional bonfire site in Galway City, Ireland. Concentrations of Cu, Pb and Zn were determined using a portable X-ray Fluorescence (P-XRF) analyser. Strong variations were observed for these metals, and several samples contained elevated Zn concentrations which exceeded the intervention threshold of the Dutch criteria (720 mg kg-1). Spatial clusters and spatial outliers were detected using the local Moran's I index and were mapped using GIS. Two clear high value spatial clusters could be observed on the upper left side and centre part of the study area for Cu, Pb and Zn. Results of variogram analyses showed high nugget-sill-ratios for Cu, Pb and Zn, indicating strong spatial variation over short distances which could be resulted from anthropogenic activities. The spatial interpolation method of ordinary kriging was applied to produce the spatial interpolation maps for Cu, Pb and Zn, and the areas with elevated concentrations were in line with historical locations of the bonfires. The hazard maps showed small parts of the study area with Zn concentrations exceeding the Dutch intervention values. In order to prevent further contamination from bonfires, it is advised that tyres and other metal-containing wastes should not be burnt. The results in this study provide useful information for management of bonfires.

Fatty acid methyl ester analysis to identify sources of soil in surface water.

PubMed

Banowetz, Gary M; Whittaker, Gerald W; Dierksen, Karen P; Azevedo, Mark D; Kennedy, Ann C; Griffith, Stephen M; Steiner, Jeffrey J

2006-01-01

Efforts to improve land-use practices to prevent contamination of surface waters with soil are limited by an inability to identify the primary sources of soil present in these waters. We evaluated the utility of fatty acid methyl ester (FAME) profiles of dry reference soils for multivariate statistical classification of soils collected from surface waters adjacent to agricultural production fields and a wooded riparian zone. Trials that compared approaches to concentrate soil from surface water showed that aluminum sulfate precipitation provided comparable yields to that obtained by vacuum filtration and was more suitable for handling large numbers of samples. Fatty acid methyl ester profiles were developed from reference soils collected from contrasting land uses in different seasons to determine whether specific fatty acids would consistently serve as variables in multivariate statistical analyses to permit reliable classification of soils. We used a Bayesian method and an independent iterative process to select appropriate fatty acids and found that variable selection was strongly impacted by the season during which soil was collected. The apparent seasonal variation in the occurrence of marker fatty acids in FAME profiles from reference soils prevented preparation of a standardized set of variables. Nevertheless, accurate classification of soil in surface water was achieved utilizing fatty acid variables identified in seasonally matched reference soils. Correlation analysis of entire chromatograms and subsequent discriminant analyses utilizing a restricted number of fatty acid variables showed that FAME profiles of soils exposed to the aquatic environment still had utility for classification at least 1 wk after submersion.

Factorial Kriging analysis and sources of heavy metals in soils of different land-use types in the Yangtze River Delta of Eastern China.

PubMed

Zhou, Jie; Feng, Ke; Li, Yinju; Zhou, Yang

2016-08-01

The objectives of this study are to analyse the pollution status and spatial correlation of soil heavy metals and identify natural and anthropogenic sources of these heavy metals at different spatial scales. Two hundred and twenty-four soil samples (0-20 cm) were collected and analysed for eight heavy metals (Cd, Hg, As, Cu, Pb, Cr, Zn and Ni) in soils of different land-use types in the Yangtze River Delta of Eastern China. The multivariate methods and factorial Kriging analysis were used to achieve the research objectives. The results indicated that the human and natural effects of different land-use types on the contents of soil heavy metals were different. The Cd, Hg, Cu, Pb and Zn in soils of industrial area were affected by human activities, and the pollution level of these heavy metals in this area was moderate. The Pb in soils of traffic area was affected by human activities, and eight heavy metals in soils of residential area and farmland area were affected by natural factor. The ecological risk status of eight heavy metals in soils of the whole study area was light. The heavy metals in soils showed three spatial scales (nugget effect, short range and long range). At the nugget effect and short range scales, the Cd, Hg, Cu, Pb and Zn in soils were affected by human and natural factors. At three spatial scales, the As, Cr and Ni in soils were affected by soil parent materials.

Fractional distribution of thallium in paddy soil and its bioavailability to rice.

PubMed

Huang, Xuexia; Li, Ning; Wu, Qihang; Long, Jianyou; Luo, Dinggui; Huang, Xiaowu; Li, Dongmei; Zhao, Dongye

2018-02-01

To investigate the bioavailability of thallium (Tl) in soil and rice in a Tl-contaminated area in Guangdong, China, the topsoil and rice samples were collected from 24 sampling sites and analyzed. Moreover, a modified sequential extraction procedure was applied to determine the different Tl fractions in the soil. The mean pH value of the soil samples was 4.50. The total Tl concentration in the paddy soil was about 4-8 times higher than the Canadian guideline value (1mgkg -1 ) for agricultural land uses. The mean ecological risk index of Tl was determined to be 483, indicating that potential hazard of the paddy soil was serious. The mean content of Tl in rice was 1.42mgkg -1 , which exceeded the German maximum permissible level (0.5mgkg -1 ) of Tl in foods and feedstuffs by a factor of nearly 3. The hazard quotient value via rice intake was 57.6, indicating a high potential health risk to the local residents. The distribution of various Tl fractions followed the order of easily reducible fraction (40.3%) > acid exchangeable fraction (30.5%) > residual fraction (23.8%) > oxidizable fraction (5.4%). Correlation analyses showed that the easily reducible fraction correlates positively with the soil Fe and Mn contents, whereas the acid exchangeable fraction is significantly correlated with the S content. The soil pH was negatively correlated with the Tl content in both soil and rice. The Tl content in rice was more strongly correlated with the exchangeable fraction than the total Tl content in the soil. Overall, the bioavailability of Tl in more acidic soil is higher, and is strongly dependent on the speciation of Tl, especially the content of acid exchangeable fraction. Copyright © 2017 Elsevier Inc. All rights reserved.

Pinus pinaster seedlings and their fungal symbionts show high plasticity in phosphorus acquisition in acidic soils.

PubMed

Ali, M A; Louche, J; Legname, E; Duchemin, M; Plassard, C

2009-12-01

Young seedlings of maritime pine (Pinus pinaster Soland in Aït.) were grown in rhizoboxes using intact spodosol soil samples from the southwest of France, in Landes of Gascogne, presenting a large variation of phosphorus (P) availability. Soils were collected from a 93-year-old unfertilized stand and a 13-year-old P. pinaster stand with regular annual fertilization of either only P or P and nitrogen (N). After 6 months of culture in controlled conditions, different morphotypes of ectomycorrhiza (ECM) were used for the measurements of acid phosphatase activity and molecular identification of fungal species using amplification of the ITS region. Total biomass, N and P contents were measured in roots and shoots of plants. Bicarbonate- and NaOH-available inorganic P (Pi), organic P (Po) and ergosterol concentrations were measured in bulk and rhizosphere soil. The results showed that bulk soil from the 93-year-old forest stand presented the highest Po levels, but relatively higher bicarbonate-extractable Pi levels compared to 13-year-old unfertilized stand. Fertilizers significantly increased the concentrations of inorganic P fractions in bulk soil. Ergosterol contents in rhizosphere soil were increased by fertilizer application. The dominant fungal species was Rhizopogon luteolus forming 66.6% of analysed ECM tips. Acid phosphatase activity was highly variable and varied inversely with bicarbonate-extractable Pi levels in the rhizosphere soil. Total P or total N in plants was linearly correlated with total plant biomass, but the slope was steep only between total P and biomass in fertilized soil samples. In spite of high phosphatase activity in ECM tips, P availability remained a limiting nutrient in soil samples from unfertilized stands. Nevertheless young P. pinaster seedlings showed a high plasticity for biomass production at low P availability in soils.

Environmental impacts of coal mine and thermal power plant to the surroundings of Barapukuria, Dinajpur, Bangladesh.

PubMed

Hossain, Md Nazir; Paul, Shitangsu Kumar; Hasan, Md Muyeed

2015-04-01

The study was carried out to analyse the environmental impacts of coal mine and coal-based thermal power plant to the surrounding environment of Barapukuria, Dinajpur. The analyses of coal, water, soil and fly ash were carried out using standard sample testing methods. This study found that coal mining industry and coal-based thermal power plant have brought some environmental and socio-economic challenges to the adjacent areas such as soil, water and air pollution, subsidence of agricultural land and livelihood insecurity of inhabitants. The pH values, heavy metal, organic carbon and exchangeable cations of coal water treated in the farmland soil suggest that coal mining deteriorated the surrounding water and soil quality. The SO4(2-) concentration in water samples was beyond the range of World Health Organisation standard. Some physico-chemical properties such as pH, conductivity, moisture content, bulk density, unburned carbon content, specific gravity, water holding capacity, liquid and plastic limit were investigated on coal fly ash of Barapukuria thermal power plant. Air quality data provided by the Barapukuria Coal Mining Company Limited were contradictory with the result of interview with the miners and local inhabitants. However, coal potentially contributes to the development of economy of Bangladesh but coal mining deteriorates the environment by polluting air, water and soil. In general, this study includes comprehensive baseline data for decision makers to evaluate the feasibility of coal power industry at Barapukuria and the coalmine itself.

Soil as an archive of coal-fired power plant mercury deposition.

PubMed

Rodríguez Martín, José Antonio; Nanos, Nikos

2016-05-05

Mercury pollution is a global environmental problem that has serious implications for human health. One of the most important sources of anthropogenic mercury emissions are coal-burning power plants. Hg accumulations in soil are associated with their atmospheric deposition. Our study provides the first assessment of soil Hg on the entire Spanish surface obtained from one sampling protocol. Hg spatial distribution was analysed with topsoil samples taken from 4000 locations in a regular sampling grid. The other aim was to use geostatistical techniques to verify the extent of soil contamination by Hg and to evaluate presumed Hg enrichment near the seven Spanish power plants with installed capacity above 1000 MW. The Hg concentration in Spanish soil fell within the range of 1-7564 μg kg(-1) (mean 67.2) and 50% of the samples had a concentration below 37 μg kg(-1). Evidence for human activity was found near all the coal-fired power plants, which reflects that metals have accumulated in the basin over many years. Values over 1000 μg kg(-1) have been found in soils in the vicinity of the Aboño, Soto de Ribera and Castellon power plants. However, soil Hg enrichment was detectable only close to the emission source, within an approximate range of only 15 km from the power plants. We associated this effect with airborne emissions and subsequent depositions as the potential distance through fly ash deposition. Hg associated with particles of ash tends to be deposited near coal combustion sources. Copyright © 2016 Elsevier B.V. All rights reserved.

Biocrusts role on nitrogen cycle and microbial communities from underlying soils in drylands

NASA Astrophysics Data System (ADS)

Anguita-Maeso, Manuel; Miralles*, Isabel; van Wesemael, Bas; Lázaro, Roberto; Ortega, Raúl; Garcia-Salcedo, José Antonio; Soriano**, Miguel

2017-04-01

Biocrusts are distributed in arid areas widely covering most of the soil surface and playing an essential role in the functioning of nitrogen cycle. The absence of biocrust coverage might affect the soil nitrogen content and the quantity and diversity of microbial communities in underlying biocrust soils. To analyse this mater, we have collected three underlying soils biocrusts samples dominated by the lichen Diploschistes diacapsis and Squamarina lentigera from Tabernas desert (southeast of Spain) at two extremes of its spatial distribution range: one with a high percentage of biocrust coverage and other with a huge degradation and low percentage of biocrust coverage in order to determine differences on the total nitrogen content and microbial communities from these underlying soils. DNA from these samples was isolated though a commercial kit and it was used as template for metagenomic analysis. We accomplished a sequencing of the amplicons V4-V5 of the 16S rRNA gene with Next-Generation Sequencing (NGS) Illumina MiSeq platform and a relative quantity of bacteria (rRNA 16S) and fungi (ITS1-5.8S) were conducted by quantitative qPCR. Total nitrogen was measured by the Kjeldahl method. Statistical analyses were based on ANOVAs, heatmap and Generalized Linear Models (GLM). The results showed 1.89E+09 bacteria per gram of soil in the high biocrust coverage position while 6.98E+08 microorganisms per gram of soil were found in the less favourable position according to the lower percentage of biocrust coverage. Similarly, 1.19E+12 was the amount of fungi per gram of soil located in the favourable position with higher biocrust coverage and 7.62E+11 was found in the unfavourable position. Furthermore, the soil under high percentage of biocrust coverage showed the greatest total nitrogen content (1.1 g kg-1) whereas the soil sampled under depressed percentage of biocrust coverage displayed the fewest quantity of total nitrogen content (0.9 g kg-1). Metagenomic and statistical analysis exhibited different bacteria communities according to underlying soils with unlike percentage of biocrust coverage. Opitutus and Adhaeribacter predominated in soil under high biocrust coverage percentage whereas Chelatococcus was found as prevalent bacteria community in soils under low biocrust coverage percentage. Our data illustrate that the percentage of biocrust coverage influence the total nitrogen content in underlying biocrust soils and also affects the amount and the variety of bacteria communities in these underlying soils. (*) Financial support by Marie Curie Intra-European Fellowship (FP7-577 PEOPLE-2013-IEF, Proposal n° 623393) and (**) by the Ministerio de Economía y Competitividad (MINECO) cofinanced with FEDER funds (project CGL2015-71709-R) is acknowledged.

Geochemical properties of topsoil around the coal mine and thermoelectric power plant.

PubMed

Stafilov, Trajče; Šajn, Robert; Arapčeska, Mila; Kungulovski, Ivan; Alijagić, Jasminka

2018-03-19

The results of the systematic study of the spatial distribution of trace metals in surface soil over the Bitola region, Republic of Macedonia, known for its coal mine and thermo-electrical power plant activities are reported. The investigated region (3200 km 2 ) is covered by a sparse sampling grid of 5 × 5 km, but in the urban zone and around the thermoelectric power plant the sampling grid is denser (1 × 1 km). In total, 229 soil samples from 149 locations were collected including top-soil (0-5 cm) and bottom-soil samples (20-30 cm and 0-30 cm). Inductively coupled plasma - atomic emission spectrometry (ICP-AES) was applied for the determinations of 21 elements (Al, As, B, Ba, Ca, Cd, Co, Cr, Cu, Fe, K, Li, Mg, Mn, Na, Ni, P, Pb, Sr, V and Zn). Based on the results of factor analyses, three geogenic associations of elements have been defined: F1 (Fe, Ni, V, Co, Cr, Mn and Li), F2 (Zn, B, Cu, Cd, Na and K) and F3 (Ca, Sr, Mg, Ba and Al). Even typical trace metals such as As, Cd, Cu, Ni, P, Pb and Zn are not isolated into anthropogenic geochemical associations by multivariate statistical methods still show some trends of local anthropogenic enrichment. The distribution maps for each analyzed element is showing the higher content of these elements in soil samples collected around the thermoelectric power plants than their average content for the soil samples collected from the whole Bitola Region. It was found that this enrichment is a result of the pollution by fly ash from coal burning which deposited near the plant having a high content of these elements.

Size Matters: Assessing Optimum Soil Sample Size for Fungal and Bacterial Community Structure Analyses Using High Throughput Sequencing of rRNA Gene Amplicons

DOE PAGES

Penton, C. Ryan; Gupta, Vadakattu V. S. R.; Yu, Julian; ...

2016-06-02

We examined the effect of different soil sample sizes obtained from an agricultural field, under a single cropping system uniform in soil properties and aboveground crop responses, on bacterial and fungal community structure and microbial diversity indices. DNA extracted from soil sample sizes of 0.25, 1, 5, and 10 g using MoBIO kits and from 10 and 100 g sizes using a bead-beating method (SARDI) were used as templates for high-throughput sequencing of 16S and 28S rRNA gene amplicons for bacteria and fungi, respectively, on the Illumina MiSeq and Roche 454 platforms. Sample size significantly affected overall bacterial and fungalmore » community structure, replicate dispersion and the number of operational taxonomic units (OTUs) retrieved. Richness, evenness and diversity were also significantly affected. The largest diversity estimates were always associated with the 10 g MoBIO extractions with a corresponding reduction in replicate dispersion. For the fungal data, smaller MoBIO extractions identified more unclassified Eukaryota incertae sedis and unclassified glomeromycota while the SARDI method retrieved more abundant OTUs containing unclassified Pleosporales and the fungal genera Alternaria and Cercophora. Overall, these findings indicate that a 10 g soil DNA extraction is most suitable for both soil bacterial and fungal communities for retrieving optimal diversity while still capturing rarer taxa in concert with decreasing replicate variation.« less

Size Matters: Assessing Optimum Soil Sample Size for Fungal and Bacterial Community Structure Analyses Using High Throughput Sequencing of rRNA Gene Amplicons

DOE Office of Scientific and Technical Information (OSTI.GOV)

Penton, C. Ryan; Gupta, Vadakattu V. S. R.; Yu, Julian

We examined the effect of different soil sample sizes obtained from an agricultural field, under a single cropping system uniform in soil properties and aboveground crop responses, on bacterial and fungal community structure and microbial diversity indices. DNA extracted from soil sample sizes of 0.25, 1, 5, and 10 g using MoBIO kits and from 10 and 100 g sizes using a bead-beating method (SARDI) were used as templates for high-throughput sequencing of 16S and 28S rRNA gene amplicons for bacteria and fungi, respectively, on the Illumina MiSeq and Roche 454 platforms. Sample size significantly affected overall bacterial and fungalmore » community structure, replicate dispersion and the number of operational taxonomic units (OTUs) retrieved. Richness, evenness and diversity were also significantly affected. The largest diversity estimates were always associated with the 10 g MoBIO extractions with a corresponding reduction in replicate dispersion. For the fungal data, smaller MoBIO extractions identified more unclassified Eukaryota incertae sedis and unclassified glomeromycota while the SARDI method retrieved more abundant OTUs containing unclassified Pleosporales and the fungal genera Alternaria and Cercophora. Overall, these findings indicate that a 10 g soil DNA extraction is most suitable for both soil bacterial and fungal communities for retrieving optimal diversity while still capturing rarer taxa in concert with decreasing replicate variation.« less

Assessing the effects of land use changes on soil sensitivity to erosion in a highland ecosystem of semi-arid Turkey.

PubMed

Bayramin, Ilhami; Basaran, Mustafa; Erpul, Günay; Canga, Mustafa R

2008-05-01

There has been increasing concern in highlands of semiarid Turkey that conversion of these systems results in excessive soil erosion, ecosystem degradation, and loss of sustainable resources. An increasing rate of land use/cover changes especially in semiarid mountainous areas has resulted in important effects on physical and ecological processes, causing many regions to undergo accelerated environmental degradation in terms of soil erosion, mass movement and reservoir sedimentation. This paper, therefore, explores the impact of land use changes on land degradation in a linkage to the soil erodibility, RUSLE-K, in Cankiri-Indagi Mountain Pass, Turkey. The characterization of soil erodibility in this ecosystem is important from the standpoint of conserving fragile ecosystems and planning management practices. Five adjacent land uses (cropland, grassland, woodland, plantation, and recreational land) were selected for this research. Analysis of variance showed that soil properties and RUSLE-K statistically changed with land use changes and soils of the recreational land and cropland were more sensitive to water erosion than those of the woodland, grassland, and plantation. This was mainly due to the significant decreases in soil organic matter (SOM) and hydraulic conductivity (HC) in those lands. Additionally, soil samples randomly collected from the depths of 0-10 cm (D1) and 10-20 cm (D2) with irregular intervals in an area of 1,200 by 4,200 m sufficiently characterized not only the spatial distribution of soil organic matter (SOM), hydraulic conductivity (HC), clay (C), silt (Si), sand (S) and silt plus very fine sand (Si + VFS) but also the spatial distribution of RUSLE-K as an algebraically estimate of these parameters together with field assessment of soil structure to assess the dynamic relationships between soil properties and land use types. In this study, in order to perform the spatial analyses, the mean sampling intervals were 43, 50, 64, 78, 85 m for woodland, plantation, grassland, recreation, and cropland with the sample numbers of 56, 79, 72, 13, and 69, respectively, resulting in an average interval of 64 m for whole study area. Although nugget effect and nugget effect-sill ratio gave an idea about the sampling design adequacy, the better results are undoubtedly likely by both equi-probable spatial sampling and random sampling representative of all land uses.

[Estacionalidad de parásitos intestinales en suelos periurbanos de la ciudad de Neuquén, Patagonia, Argentina].

PubMed

Pierangeli, Nora Beatriz; Giayetto, Alejandro Lorenzo; Manacorda, Ana Maria; Barbieri, Liliana Marta; Soriano, Silvia Viviana; Veronesi, Alicia; Pezzani, Betina Cecilia; Minvielle, Marta Cecilia; Basualdo, Juan Angel

2003-03-01

To determine the presence of eggs, larva, cysts and oocysts of intestinal parasites in the soil of a suburb of Neuquén city during 1 year in order to evaluate their seasonal fluctuations in relation to climatic data and soil characteristics in the studied area. A total of 107 soil samples were processed for parasite isolation by sedimentation and flotation methods during the four seasons of the year. Meteorological data were registered and physical, chemical and structural characteristics of the soil were analysed. About 28.9% of the soil samples were positive for at least one parasite form. Six protozoa species (cysts of Entamoeba sp., Enteromonas sp., Endolimax sp., Giardia sp., Iodamoeba sp. and coccidia oocysts) were recovered, but neither larvae nor eggs of human or animal helminths parasites were detected. The percentage of contaminated soil samples and the diversity of species showed a marked decrease in the warm and dry months of the summer. The soil was sandy, without vegetable cover, well drained, and with scarce organic matter content. The frequencies of parasite recovery and the number of species show seasonal fluctuations related to the rainfall. The importance of soil as a risk factor for the transmission of intestinal parasites in the studied area is conditioned by its structural characteristics, which prevent retaining the humidity, and by climatic variables. The interrelation of both factors determines unfavourable conditions that could explain the low level of contamination observed in soil as well as the absence of eggs and helminth larvae.

Micromorphology of pelletized soil conditioners

NASA Astrophysics Data System (ADS)

Hirsch, Florian; Dietrich, Nils; Knoop, Christine; Raab, Thomas

2017-04-01

Soil conditioners produced by anaerobic digestion and subsequent composting of organic household waste, bear the potential to improve unproductive farmland together with a reduced input risk of unwanted pollutants into the soils. Within the VeNGA project (http://www.biogas-network.de/venga), soil conditioners from anaerobically digested organic household waste are tested for their potential to increase plant growth in glasshouse and field experiments. Because the production techniques of these soil conditioners may influence their physical and chemical behaviour in the soil, two different techniques for pelletizing the soil conditioners where applied. We present findings from a pot experiment with cereal that has been sampled after two months for micromorphological analyses. We visualize the decomposition and the physical behaviour of the soil conditioners. Pellets produced in an agglomeration mixer result in dense balls, that are only slightly decomposed after the trial. But the soil conditioners created under pressure in a screw extruder are rich in voids and have the potential of retaining more soil water.

The effect of gold mining and processing on biogeochemical cycles in Muteh area, Isfahan province, Iran

NASA Astrophysics Data System (ADS)

Keshavarzi, B.; Moore, F.

2009-04-01

The environmental impacts of gold mining and processing on geochemical and biogeochemical cycles in Muteh region located northwest of Esfahan province and northeast of Golpaygan city is investigated. For this purpose systematic sampling was carried out in, rock, soil, water, and sediment environments along with plant, livestocks and human hair samples. Mineralogical and Petrological studies show that ore mineral such as pyrite and arsenopyrite along with fluorine-bearing minerals like tremolite, actinolite, biotite and muscovite occur in green schist, amphibolite and lucogranitic rocks in the area. The hydrochemistry of the analysed water samples indicate that As and F display the highest concentrations among the analysed elements. Indeed arsenic has the highest concentration in both topsoil and subsoil samples when compared with other potentially toxic elements. Anthropogenic activity also have it s greatest effect on increasing arsenic concentration among the analysed samples. The concentration of the majority of the analysed elements in the shoots and leaves of two local plants of the region i.e Artemesia and Penagum is higher than their concentration in the roots. Generally speaking, Artemesia has a greater tendency for bioaccumulating heavy metals. The results of cyanide analysis in soil samples show that cyanide concentration in the soils near the newly built tailing dam is much higher than that in the vicinity of the old tailing dam. The high concentration of fluorine in the drinking water of the Muteh village is the main reason of the observed dental fluorosis symptoms seen in the inhabitants. One of the two drinking water wells which is located near the metamorphic complex and supplies part of the tap water in the village, probably has the greatest impact in this regard. A decreasing trend in fluorine concentration is illustrated with increasing distance from the metamorphic complex. Measurements of As concentration in human hair specimens indicate that As content in all analysed samples is higher than the published standard levels. The most probable source for As contamination is the high concentration of this element in tap water and nutrients in all trophic levels. As content was also found to be high in livestock's wool and hair. Arsenic toxicity is probably the main reason for the observed hyperpigmentation and keratosis of palms and soles seen in the villagers. The high concentration of arsenic in various biogeochemical cycles in the Muteh region is the result of the geological nature of the Muteh district enhanced by gold mining and processing which plays an active role in the remobilization of this elements.

Standardized Procedures for Use of Nucleic Acid-Based Tools

EPA Science Inventory

Groundwater and soil samples are frequently analyzed using molecular biological tools (MBTs) to detect unique genetic biomarkers associated with Dehalococcoides (Dhc) and other environmentally relevant microorganisms. The results of these analyses are increasingly used b...

Quantitative comparison of initial soil erosion processes and runoff generation in Spanish and German vineyards.

PubMed

Rodrigo Comino, J; Iserloh, T; Lassu, T; Cerdà, A; Keestra, S D; Prosdocimi, M; Brings, C; Marzen, M; Ramos, M C; Senciales, J M; Ruiz Sinoga, J D; Seeger, M; Ries, J B

2016-09-15

The aim of this study was to enable a quantitative comparison of initial soil erosion processes in European vineyards using the same methodology and equipment. The study was conducted in four viticultural areas with different characteristics (Valencia and Málaga in Spain, Ruwer-Mosel valley and Saar-Mosel valley in Germany). Old and young vineyards, with conventional and ecological planting and management systems were compared. The same portable rainfall simulator with identical rainfall intensity (40mmh(-1)) and sampling intervals (30min of test duration, collecting the samples at 5-min-intervals) was used over a circular test plot with 0.28m(2). The results of 83 simulations have been analysed and correlation coefficients were calculated for each study area to identify the relationship between environmental plot characteristics, soil texture, soil erosion, runoff and infiltration. The results allow for identification of the main factors related to soil properties, topography and management, which control soil erosion processes in vineyards. The most important factors influencing soil erosion and runoff were the vegetation cover for the ecological German vineyards (with 97.6±8% infiltration coefficients) and stone cover, soil moisture and slope steepness for the conventional land uses. Copyright © 2016 Elsevier B.V. All rights reserved.

Geophagy: soil consumption enhances the bioactivities of plants eaten by chimpanzees

NASA Astrophysics Data System (ADS)

Klein, Noémie; Fröhlich, François; Krief, Sabrina

2008-04-01

Geophagy, the deliberate ingestion of soil, is a widespread practice among animals, including humans. Although some cases are well documented, motivations and consequences of this practice on the health status of the consumer remain unclear. In this paper, we focused our study on chimpanzees ( Pan troglodytes schweinfurthii) of the Kibale National Park, Uganda, after observing they sometimes ingest soil shortly before or after consuming some plant parts such as leaves of Trichilia rubescens, which have in vitro anti-malarial properties. Chemical and mineralogical analyses of soil eaten by chimpanzees and soil used by the local healer to treat diarrhoea revealed similar composition, the clay mineralogy being dominated by kaolinite. We modelled the interaction between samples of the two types of soil and the leaves of T. rubescens in gastric and intestinal compartments and assayed the anti-malarial properties of these solutions. Results obtained for both soil samples are similar and support the hypothesis that soil enhances the pharmacological properties of the bio-available gastric fraction. The adaptive function of geophagy is likely to be multi-factorial. Nevertheless, the medical literature and most of occidental people usually consider geophagy in humans as an aberrant behaviour, symptomatic of metabolic dysfunction. Our results provide a new evidence to view geophagy as a practice for maintaining health, explaining its persistence through evolution.

SoilJ - An ImageJ plugin for semi-automatized image-processing of 3-D X-ray images of soil columns

NASA Astrophysics Data System (ADS)

Koestel, John

2016-04-01

3-D X-ray imaging is a formidable tool for quantifying soil structural properties which are known to be extremely diverse. This diversity necessitates the collection of large sample sizes for adequately representing the spatial variability of soil structure at a specific sampling site. One important bottleneck of using X-ray imaging is however the large amount of time required by a trained specialist to process the image data which makes it difficult to process larger amounts of samples. The software SoilJ aims at removing this bottleneck by automatizing most of the required image processing steps needed to analyze image data of cylindrical soil columns. SoilJ is a plugin of the free Java-based image-processing software ImageJ. The plugin is designed to automatically process all images located with a designated folder. In a first step, SoilJ recognizes the outlines of the soil column upon which the column is rotated to an upright position and placed in the center of the canvas. Excess canvas is removed from the images. Then, SoilJ samples the grey values of the column material as well as the surrounding air in Z-direction. Assuming that the column material (mostly PVC of aluminium) exhibits a spatially constant density, these grey values serve as a proxy for the image illumination at a specific Z-coordinate. Together with the grey values of the air they are used to correct image illumination fluctuations which often occur along the axis of rotation during image acquisition. SoilJ includes also an algorithm for beam-hardening artefact removal and extended image segmentation options. Finally, SoilJ integrates the morphology analyses plugins of BoneJ (Doube et al., 2006, BoneJ Free and extensible bone image analysis in ImageJ. Bone 47: 1076-1079) and provides an ASCII file summarizing these measures for each investigated soil column, respectively. In the future it is planned to integrate SoilJ into FIJI, the maintained and updated edition of ImageJ with selected plugins.

A survey of trace metals in vegetation, soil and lower animal along some selected major roads in metropolitan city of Lagos.

PubMed

Awofolu, O R

2005-06-01

The concentration of trace metals (Cd, Cu, Pb and Zn) in a total of 144 samples of grass, soil and lower animal (earthworm, Lybrodrilus violaceous) were collected and analysed for their metallic content. Levels of cadmium ranged from 0.01-0.07 microg g(-1); 0.01-0.12 microg g(-1) and from trace-0.05 microg g(-1) dry weight for plant, soil and animal samples respectively. Mean concentration of copper ranged 0.10-1.48 microg g(-1); 0.10-2.90 microg g(-1) and 0.01-0.08 microg g(-1) for samples in similar order as above. The levels of Pb varied from 0.01-0.14 microg g(-1); 0.02-0.23 microg g(-1) and from trace-0.07 microg (g-1) while that of Zn ranged from 0.19-1.80 microg g(-1); 0.51-3.35 microg g(-1) and 0.01-0.08 microg g(-1) also in the same order of samples as mentioned above. Levels of metals in soil samples were higher than the background levels with the exception of Zn but lower than European Union (EU) limits. The results generally revealed the presence of metals in plant and animal samples and metal dynamics up the food chain is highly possible. Acceptable recoveries of the spiking experiment validate the experimental protocol.

Role of anaerobic bacteria in biological soil disinfestation for elimination of soil-borne plant pathogens in agriculture.

PubMed

Ueki, Atsuko; Kaku, Nobuo; Ueki, Katsuji

2018-06-01

Biological soil disinfestation (BSD) or reductive soil disinfestation (RSD) is an environmental biotechnology to eliminate soil-borne plant pathogens based on functions of indigenous microbes. BSD treatments using different types of organic materials have been reported to effectively control a wide range of plant pathogens. Various studies have shown that development of reducing or anoxic conditions in soil is the most important aspect for effective BSD treatments. Substances such as organic acids, FeS, or phenolic compounds generated in the treated soil have been suggested to contribute to inactivation of pathogens. Additionally, anaerobic bacteria grown in the BSD-treated soil may produce and release enzymes with anti-pathogenic activities in soil. Clone library analyses as well as a next-generation sequence analysis based on 16S rRNA genes have revealed prosperity of obligate anaerobic bacteria from the class Clostridia in differently treated BSD soils. Two anaerobic bacterial strains isolated from BSD-treated soil samples and identified as Clostridium beijerinckii were found to decompose major cell wall polysaccharides of ascomycetous fungi, chitosan and β-1,3-glucan. C. beijerinckii is a species most frequently detected in the clone library analyses for various BSD-treated soils as a closely related species. The two anaerobic isolates severely degraded mycelial cells of the Fusarium pathogen of spinach wilt disease during anaerobic co-incubation of each isolate and the Fusarium pathogen. These reports suggest that antifungal enzymes produced by predominant anaerobic bacteria grown in the BSD-treated soil play important roles to control soil-borne fungal pathogens. Further studies using different bacterial isolates from BSD-treated soils are expected to know their anti-pathogenic abilities.

Speciation analysis of aluminium in plant parts of Betula pendula and in soil.

PubMed

Zioła-Frankowska, Anetta; Frankowski, Marcin

2018-03-01

The research presents the first results of aluminium speciation analysis in aqueous extracts of individual plant parts of Betula pendula and soil samples, using High Performance Ion Chromatography with Diode Array Detection (HPIC-DAD). The applied method allowed us to carry out a full speciation analysis of aluminium in the form of predominant aluminium-fluoride complexes: AlF (x=2,3,4) (3-x) (first analytical signal), AlF 2+ (second analytical signal) and Al 3+ (third analytical signal) in samples of lateral roots, tap roots, twigs, stem, leaf and soil collected under roots of B. pendula. Concentrations of aluminium and its complexes were determined for two types of environment characterised by different degree of human impact: contaminated site of the Chemical Plant in Luboń and protected area of the Wielkopolski National Park. For all the analysed samples of B. pendula and soil, AlF (x=2,3,4) (3-x) had the largest contribution, followed by Al 3+ and AlF 2+ . Significant differences in concentration and contribution of Al-F complexes and Al 3+ form, depending on the place of sampling (different anthropogenic pressure) and plant part of B. pendula were observed. Based on the obtained results, it was found that transport of aluminium is "blocked" by lateral roots, and is closely related to Al content of soil. Copyright © 2017. Published by Elsevier B.V.

Assessment of Potential Location of High Arsenic Contamination Using Fuzzy Overlay and Spatial Anisotropy Approach in Iron Mine Surrounding Area

PubMed Central

Wirojanagud, Wanpen; Srisatit, Thares

2014-01-01

Fuzzy overlay approach on three raster maps including land slope, soil type, and distance to stream can be used to identify the most potential locations of high arsenic contamination in soils. Verification of high arsenic contamination was made by collection samples and analysis of arsenic content and interpolation surface by spatial anisotropic method. A total of 51 soil samples were collected at the potential contaminated location clarified by fuzzy overlay approach. At each location, soil samples were taken at the depth of 0.00-1.00 m from the surface ground level. Interpolation surface of the analysed arsenic content using spatial anisotropic would verify the potential arsenic contamination location obtained from fuzzy overlay outputs. Both outputs of the spatial surface anisotropic and the fuzzy overlay mapping were significantly spatially conformed. Three contaminated areas with arsenic concentrations of 7.19 ± 2.86, 6.60 ± 3.04, and 4.90 ± 2.67 mg/kg exceeded the arsenic content of 3.9 mg/kg, the maximum concentration level (MCL) for agricultural soils as designated by Office of National Environment Board of Thailand. It is concluded that fuzzy overlay mapping could be employed for identification of potential contamination area with the verification by surface anisotropic approach including intensive sampling and analysis of the substances of interest. PMID:25110751

Temporal changes in soil water repellency linked to the soil respiration and CH4 and CO2 fluxes

NASA Astrophysics Data System (ADS)

Qassem, Khalid; Urbanek, Emilia; van Keulen, Geertje

2014-05-01

Soil water repellency (SWR) is known to be a spatially and temporally variable phenomenon. The seasonal changes in soil moisture lead to development of soil water repellency, which in consequence may affect the microbial activity and in consequence alter the CO2 and CH4 fluxes from soils. Soil microbial activity is strongly linked to the temperature and moisture status of the soil. In terms of CO2 flux intermediate moisture contents are most favourable for the optimal microbial activity and highest CO2 fluxes. Methanogenesis occurs primarily in anaerobic water-logged habitats while methanotrophy is a strictly aerobic process. In the study we hypothesise that the changes in CO2 and CH4 fluxes are closely linked to critical moisture thresholds for soil water repellency. This research project aims to adopt a multi-disciplinary approach to comprehensively determine the effect of SWR on CO2 and CH4 fluxes. Research is conducted in situ at four sites exhibiting SWR in the southern UK. Flux measurements are carried out concomitant with meteorological and SWR observations Field observations are supported by laboratory measurements carried out on intact soil samples collected at the above identified field sites. The laboratory analyses are conducted under constant temperatures with controlled changes of soil moisture content. Methanogenic and Methanotrophic microbial populations are being analysed at different SWR and moisture contents using the latest metagenomic and metatranscriptomic approaches. Currently available data show that greenhouse gas flux are closely linked with soil moisture thresholds for SWR development.

DRY–WET CYCLES INCREASE PESTICIDE RESIDUE RELEASE FROM SOIL

PubMed Central

Jablonowski, Nicolai David; Linden, Andreas; Köppchen, Stephan; Thiele, Björn; Hofmann, Diana; Burauel, Peter

2012-01-01

Soil drying and rewetting may alter the release and availability of aged pesticide residues in soils. A laboratory experiment was conducted to evaluate the influence of soil drying and wetting on the release of pesticide residues. Soil containing environmentally long-term aged (9–17 years) 14C-labeled residues of the herbicides ethidimuron (ETD) and methabenzthiazuron (MBT) and the fungicide anilazine (ANI) showed a significantly higher release of 14C activity in water extracts of previously dried soil compared to constantly moistened soil throughout all samples (ETD: p < 0.1, MBT and ANI: p < 0.01). The extracted 14C activity accounted for 44% (ETD), 15% (MBT), and 20% (ANI) of total residual 14C activity in the samples after 20 successive dry–wet cycles, in contrast to 15% (ETD), 5% (MBT), and 6% (ANI) in extracts of constantly moistened soils. In the dry–wet soils, the dissolved organic carbon (DOC) content correlated with the measured 14C activity in the aqueous liquids and indicated a potential association of DOC with the pesticide molecules. Liquid chromatography MS/MS analyses of the water extracts of dry–wet soils revealed ETD and MBT in detectable amounts, accounting for 1.83 and 0.01%, respectively, of total applied water-extractable parent compound per soil layer. These findings demonstrate a potential remobilization of environmentally aged pesticide residue fractions from soils due to abiotic stresses such as wet–dry cycles. Environ. Toxicol. Chem. 2012; 31: 1941–1947. © 2012 SETAC PMID:22782855

Soil carbon stabilization and turnover at alley-cropping systems, Eastern Germany

NASA Astrophysics Data System (ADS)

Medinski, T.; Freese, D.

2012-04-01

Alley-cropping system is seen as a viable land-use practice for mitigation of greenhouse gas CO2, energy-wood production and soil carbon sequestration. The extent to which carbon is stored in soil varies between ecosystems, and depends on tree species, soil types and on the extent of physical protection of carbon within soil aggregates. This study investigates soil carbon sequestration at alley-cropping systems presented by alleys of fast growing tree species (black locust and poplar) and maize, in Brandenburg, Eastern Germany. Carbon accumulation and turnover are assessed by measuring carbon fractions differing in decomposition rates. For this purpose soil samples were fractionated into labile and recalcitrant soil-size fractions by wet-sieving: macro (>250 µm), micro (53-250 µm) and clay + silt (<53 µm), followed by determination of organic carbon and nitrogen by gas-chromatography. Soil samples were also analysed for the total C&N content, cold-water extractable OC, and microbial C. Litter decomposition was evaluated by litter bags experiment. Soil CO2 flux was measured by LiCor automated device LI-8100A. No differences for the total and stable (clay+silt, <53 µm) carbon fraction were observed between treatment. While cold water-extractable carbon was significantly higher at maize alley compared to black locust alley. This may indicate faster turnover of organic matter at maize alley due to tillage, which influenced greater incorporation of plant residues into the soil, greater soil respiration and microbial activity.

Petrologic variations in Apollo 16 surface soils

NASA Technical Reports Server (NTRS)

Houck, K. J.

1982-01-01

Source rock, maturation history and intrasite variation data are derived for the Apollo 16 regolith by comparing modal analyses of 15 surface soils with rake and rock sample data. Triangular source rock component plots show that Apollo 16 soils have similar source rocks that are well homogenized throughout the site. The site can be divided into three soil petrographic provinces. Central site soils are mature, well homogenized, and enriched in glass. They are probably the most typical Cayley Plains materials present. North Ray soils are immature to submature, containing North Ray ejecta. South Ray soils are mature, but contain small amounts of fresh impact melts and plagioclase, due perhaps to the breakdown of blocky South Ray ejecta. The different compositions and physical properties of North and South Ray ejecta support the hypothesis that the latter event excavated Cayley material, while the former excavated Descartes materials.

New Model for Agglutinitic Glass Formation from LSCC Data

NASA Technical Reports Server (NTRS)

Pieters, C. M.; Taylor, L. A.

2003-01-01

Since the return of the first lunar samples it has been well known that glass-welded aggregates (agglutinates) accumulate in lunar soil as the result of multiple processes, many of which are driven by micrometeorite impacts. The proportion of agglutinates increases with increasing exposure to the space environment, and for an individual soil the proportion of agglutinates also increases with decreasing particle size. Detailed chemical and petrographic analyses of a suite of mare soils and their agglutinate constituents prepared by the Lunar Soil Characterization Consortium appeared to confirm the "Fusion of the Finest Fraction" model for agglutinate formation (or F3) proposed by Papike et al. However, recent LSCC data for highland soils are not consistent with the F3 model and alternate models for agglutinate formation must be revisited. Instead, we suggest differential melting of soil species may be more consistent with the full range of soil data to date.

Contents and composition of organic matter in subsurface soils affected by land use and soil mineralogy

NASA Astrophysics Data System (ADS)

Ellerbrock, Ruth H.; Kaiser, Michael

2010-05-01

Land use and mineralogy affect the ability of surface as well as subsurface soils to sequester organic carbon and their contribution to mitigate the greenhouse effect. This study aimed to investigate the long-term impact of land use (i.e., arable and forest) and soil mineralogy on contents and composition of soil organic matter (SOM) from subsurface soils. Seven soils different in mineralogy (Albic and Haplic Luvisol, Colluvic and Haplic Regosol, Haplic and Vertic Cambisol, Haplic Stagnosol) were selected within Germany. Soil samples were taken from forest and adjacent arable sites. First, particulate and water soluble organic matter were separated from the subsurface soil samples. From the remaining solid residues the OM(PY) fractions were separated, analyzed for its OC content (OCPY) and characterized by FTIR spectroscopy. For the arable subsurface soils multiple regression analyses indicate significant positive relationships between the soil organic carbon contents and the contents of i) exchangeable Ca and oxalate soluble Fe, and Alox contents. Further for the neutral arable subsurface soils the contents OCPY weighted by its C=O contents were found to be related to the contents of Ca indicating interactions between OM(PY) and Ca cations. For the forest subsurface soils (pH <5) the OCPY contents were positively related with the contents of Na-pyrophosphate soluble Fe and Al. For the acidic forest subsurface soils such findings indicate interactions between OM(PY) and Fe3+ and Al3+ cations. The effects of land use and soil mineralogy on contents and composition of SOM and OM(PY) will be discussed.

Secondary metabolites and metal content dynamics in Teucrium montanum L. and Teucrium chamaedrys L. from habitats with serpentine and calcareous substrate.

PubMed

Zlatić, Nenad M; Stanković, Milan S; Simić, Zoran S

2017-03-01

The purpose of this comparative analysis is the determination of the total quantity of metals (Mg, Ca, K, Ni, Fe, Mn, Zn, Cu, Cr and Pb) in soil samples, above ground plant parts and tea made of plants Teucrium montanum and T. chamaedrys from different serpentine and calcareous habitats as well as of the total quantity of phenolic compounds and antioxidant activity. The obtained results showed that the quantities of certain metals (Mg, Fe, Ni and Mn) in the soil from the serpentine habitats were greater in comparison with other metals (Ca, Zn and Pb) which were more frequently found in the soil from the calcareous habitats. The results demonstrated that the analysed plant samples from the serpentine habitats contained higher quantity of Fe, Ni and Cr as opposed to the plant samples from the calcareous habitats which contained greater quantity of Ca and Zn. Although the studied species accumulate analysed metals in different quantities, depending on the substrate type, they are not hyperaccumulators of these metals. The use of these species from serpentine habitats for tea preparation is safe to a great extent, because in spite of the determined metal absorption by plant organs, the tea does not contain dangerous quantity of heavy metals. The results showed greater total quantity of phenolic compounds and the higher level of antioxidant activity in the plant samples from serpentine habitats in comparison with the samples from calcareous habitats, which is an indicator of one of the mechanisms of adaptation to the serpentine habitat conditions.

Microbiological indicators for assessing ecosystem soil quality and changes in it at degraded sites treated with compost

NASA Astrophysics Data System (ADS)

Ancona, Valeria; Barra Caracciolo, Anna; Grenni, Paola; Di Lenola, Martina; Calabrese, Angelantonio; Campanale, Claudia; Felice Uricchio, Vito

2014-05-01

Soil quality is defined as the capacity of a soil to function as a vital system, within natural or managed ecosystem boundaries, sustain plant and animal health and productivity, maintain or enhance air and water environment quality and support human health and habitation. Soil organisms are extremely diverse and contribute to a wide range of ecosystem services that are essential to the sustainable functioning of natural and managed ecosystems. In particular, microbial communities provide several ecosystem services, which ensure soil quality and fertility. In fact, they adapt promptly to environmental changes by varying their activity and by increasing the reproduction of populations that have favourable skills. The structure (e.g. cell abundance) and functioning (e.g. viability and activity) of natural microbial communities and changes in them under different environmental conditions can be considered useful indicators of soil quality state. In this work we studied the quality state of three different soils, located in Taranto Province (Southern Italy), affected by land degradation processes, such as organic matter depletion, desertification and contamination (PCB and metals). Moreover, compost, produced from selected organic waste, was added to the soils studied in order to improve their quality state. Soil samples were collected before and after compost addition and both microbial and chemical analyses were performed in order to evaluate the soil quality state at each site at different times. For this purpose, the microbiological indicators evaluated were bacterial abundance (DAPI counts), cell viability (Live/Dead method), dehydrogenase activity (DHA) and soil respiration. At the same time, the main physico-chemical soil characteristics (organic carbon, available phosphorous, total nitrogen, carbonate and water content, texture and pH) were also measured. Moreover, in the contaminated soil samples PCB and inorganic (e.g. Pb, Se, Sn, Zn) contaminants were analysed respectively by GC-MS and ICP-MS. The overall results showed that the bacterial structure and functioning were affected in different ways by the organic carbon availability and quality, and contaminant occurrence (organic or inorganic compounds). The compost treatment contributed to improve soil fertility and to increase cell number and activity after 7 months in the two low organic carbon content soils. At the polluted site a general increase in bacterial activity after compost addition was also observed and this might be related to a decrease in inorganic and organic contamination levels.

Determination of Trace Available Heavy Metals in Soil Using Laser-Induced Breakdown Spectroscopy Assisted with Phase Transformation Method.

PubMed

Yi, Rongxing; Yang, Xinyan; Zhou, Ran; Li, Jiaming; Yu, Huiwu; Hao, Zhongqi; Guo, Lianbo; Li, Xiangyou; Lu, Yongfeng; Zeng, Xiaoyan

2018-05-18

To detect available heavy metals in soil using laser-induced breakdown spectroscopy (LIBS) and improve its poor detection sensitivity, a simple and low cost sample pretreatment method named solid-liquid-solid transformation was proposed. By this method, available heavy metals were extracted from soil through ultrasonic vibration and centrifuging and then deposited on a glass slide. Utilization of this solid-liquid-solid transformation method, available Cd and Pb elements in soil were detected successfully. The results show that the regression coefficients of calibration curves for soil analyses reach to more than 0.98. The limits of detection could reach to 0.067 and 0.94 ppm for available Cd and Pb elements in soil under optimized conditions, respectively, which are much better than those obtained by conventional LIBS.

Thermal Infrared Spectra of Natural and Manmade Materials: Implications for Remote Sensing.

DTIC Science & Technology

1991-08-01

by M. B. Satterwhite and J. P. Henley near Battle Mountain , NV. Sample characterization and chemical/ physical analyses performed under contract with...0000 ’L 0000 𔃺 3NV1037-hJ3 t % Sample: Soil 89-52 Sample data: Sample collected during 1989 by M. B. Satterwhite and J. P. Henley near Battle Mountain ...00 .V 00 .91000 8 0000 N~fl3hd3~0 Sample: 89-54 Sample data: Sample collected during 1989 by M. B. Satterwhite and J. P. Henley near Battle Mountain

Nitrogen gas emissions and their genetic potential in tropical peatlands of French Guiana

NASA Astrophysics Data System (ADS)

Kasak, Kuno; Oopkaup, Kristjan; Järveoja, Järvi; Maddison, Martin; Ligi, Teele; Truu, Marika; Truu, Jaak; Mander, Ülo

2016-04-01

In the current study, nitrogen gas (N2, N2O) emissions from tropical peatlands (French Guiana) were measured and their relationships with the soil chemical parameters, water regime, and abundances of genes encoding denitrification associated nitrite and nitrous oxide reductases were analysed. The measurements and soil sampling (from 0-10 cm layer) were carried out in October 2013 in two sites (undisturbed and drainage influenced) of the northern part of French Guiana. In both study sites, three transects along the groundwater depth gradient with three sampling points in each transect were established. At each sampling point, N2O emissions were measured in six sessions during three days using static closed chambers. N2 emission from the top-soil samples were measured in the laboratory applying He-O (N2) method. Soil pHKCl, NO3-N, NH4-N, soluble P, K, Ca and Mg, totN and soil organic matter content were determined from the collected samples. Bacterial 16S rRNA gene, (and marker genes for measuring denitrification potential) nirS, nirK, nosZ clade I and clade II copies were quantified in the soils using qPCR method. Whole genome shotgun sequencing of DNA extracted from soil samples was performed on Illumina NextSeq system. Metagenomes were used for microbial profiling, identifying functional genes and relating them to biogeochemical cycles and biological processes. N2O emissions were significantly lower and N2 emissions higher (p<0.05 in both cases) in natural sites (mean values -0.3 and 10 μg m-2 h-1 for N2O, and 1477 and 637 μg m-2 h-1 for N2 in natural and drained sites, respectively). Results from molecular analyses show that the bacterial community was significantly more abundant (p<0.001) in the natural site while the N2O production potential (by the abundance of nir genes) was not different between the two sites. N2O reduction potential (by the abundance of nosZ genes) was higher (p<0.01) in the natural area where also the lower mineral N content and high groundwater level was detected. A systematic variation in nir and nosZ genes abundances along the groundwater depth gradient in both areas was notable. Variation in dominant bacterial groups between drained site samplings was more noticeable, than along the groundwater depth gradient in natural site. However ten out of twenty four bacterial genera (over 1% of taxonomically classified sequences) were shared between two sites (mostly Mycobacterium, Rhodopseudomonas, and Streptomyces). Archaea were dominated in natural sites by methanogens (Methanomicrobia, Methanobacteria, and Methanococci), while archaeal classes in drained sites were more evenly distributed.

Portable gamma spectrometry: measuring soil erosion in-situ at four Critical Zone Observatories in P. R. China

NASA Astrophysics Data System (ADS)

Sanderson, N. K.; Green, S. M.; Chen, Z.; Wang, J.; Wang, Y.; Wang, R.; Yu, K.; Tu, C.; Jia, X.; Li, G.; Peng, X.; Quine, T. A.

2017-12-01

Detecting patterns of soil erosion, redistribution, and/soil nutrient loss is important for long-term soil conservation and agricultural sustainability. Caesium-137 (137Cs) and other fallout radionuclide inventories have been used over the the last 50 years to track soil erosion, transport and deposition on a catchment scale, and have been shown to be useful for informing models of temporal/spatial soil redistribution. Traditional sampling methods usually involves coring, grinding, sieving, sub-sampling and laboratory analysis using HPGe detectors, all of which can be costly and time consuming. In-situ measurements can provide a mechanism for assessment of 137Cs over larger areas that integrate the spatial variability, and expand turnover of analyses. Here, we assess the applicability of an in-situ approach based on radionuclide principles, and provide a comparison of the two approaches: laboratory vs. in-situ. The UK-China Critical Zone Observatory (CZO) programme provides an ideal research platform to assess the in-situ approach to measuring soil erosion: using a portable gamma spectrometer to determine 137Cs inventories. Four extensive field slope surveys were conducted in the CZO's, which covers four ecosystem types in China: karst, red soil, peri-urban, and loess plateau. In each CZO, 3-6 plots were measured along 2 slope transects, with 3 replicated 1 hour counts of 137Cs in each plot. In addition, 137Cs soil depth and bulk density profiles were also sampled for each plot, and lab-derived inventories calculated using traditional methods for comparison. Accurately and rapidly measuring 137Cs inventories using a portable field detector allows for a greater coverage of sampling locations and the potential for small-scale spatial integration, as well as the ability to re-visit sites over time and continually adapt and improve soil erosion/redistribution models, thus more effectively targeting areas of interest with reduced cost and time constraints.

Geochemical and Pb isotopic characterization of soil, groundwater, human hair, and corn samples from the Domizio Flegreo and Agro Aversano area (Campania region, Italy)

USGS Publications Warehouse

Rezza, Carmela; Albanese, Stefano; Ayuso, Robert A.; Lima, Annamaria; Sorvari, Jaana; De Vivo, Benedetto

2018-01-01

A geochemical survey was carried out to investigate metal contamination in the Domizio Littoral and Agro Aversano area (Southern Italy) by means of soil, groundwater, human hair and corn samples. Pb isotope ratios were also determined to identify the sources of metals. Specifically, the investigation focused on topsoils (n = 1064), groundwater (n = 26), 25 human hair (n = 24) and corn samples (n = 13). Topsoils have been sampled and analysed in a previous study for 53 elements (including potentially harmful ones), and determined by ICP-MS after dissolving with aqua regia. Groundwater was analysed for 72 elements by ICP-MS and by ICP-ES. Samples of human hair were prepared and analysed for 16 elements by ICP-MS. Dried corn collected at several farms were also analysed for 53 elements by ICP-MS. The isotopic ratios of 206Pb/207Pb and 208Pb/207Pb in selected topsoil (n = 24), groundwater (n = 9), human hair (n = 9) and corn (n = 4) samples were analysed from both eluates and residues to investigate possible anthropogenic contamination and geogenic contributions. All data were processed and mapped by ArcGis software to produce interpolated maps and contamination factor maps of potentially harmful elements, in accordance with Italian Environmental Law (Legislative Decree 152/06). Results show that soil sampling sites are characterized by As, Cd, Co, Cr, Cu, Hg, Pb, Se, and Zn contents exceeding the action limits established for residential land use (RAL) and, in some cases, also the action limits for industrial land use (IAL) as established by Legislative Decree 152/06. A map of contamination factors and a map showing the degrees of contamination indicate that the areas in the municipalities of Acerra, Casoria and Giugliano have been affected by considerable anthropogenic-related pollution. To interpret the isotopic data and roughly estimate proportion of Pb from an anthropogenic source we broadly defined possible natural and anthropogenic Pb end-member fields based on literature data. For example, we summarized data for Vesuvius and Campi Flegrei volcanic rocks, gasoline, and aerosol deposits.Lead isotope data show mixing between geogenic and anthropogenic sources. Topsoil, groundwater, human hair and corn samples show a greater contribution from geogenic sources like the Yellow Tuff (from Campi Flegrei) and volcanic rocks from Mt. Vesuvius. Aerosols, fly ash and gasoline (anthropogenic sources) have also been contributors. In detail, 46% of the topsoil residues, 96% of topsoil leachates, 88% of groundwater, 90% of human hair, and 25% of corn samples indicate that > 50% percent of the lead in this area can be ascribed to anthropogenic activity.

Effects of Freezing and Thawing on Consolidation Behavior of Clayey Soils

NASA Astrophysics Data System (ADS)

Binal, Adil; Adeli, Parisa

2015-04-01

An apprehending of freezing and thawing effects on cohesive soil is considerable for many construction and environmental subjects. This paper relates the effects of freezing and thawing on consolidation behaviour of clayey soils. The Capital of Ankara settled on a sequence of lacustrine sediments. These sediments include fine grain soils, locally. Collected samples were undisturbed grey clay and clayey sand that were obtained from the bottom of a construction zone at about 1m depth below the ground surface. Total of 32 moulded samples were prepared with constant water content to reflect the moisture condition in the active surface layer. Gray clay and clayey sand were analysed in the laboratory, and found to have the plastic limits (PL) of 33.01% and 22.56%, the liquid limits (LL) of 75.05% and 36.97%, and the plasticity indexes (PI) of 42.04% and 14.41%. The soil samples were classified as "CH" and "SC" in accordance with the unified soil classification system. Soil samples for all tests were placed in a freezer that has -18°C temperature. Samples have been waited in it for twenty-four hours. Then, they have been removed from the freezer and allowed to stand for twenty-four hours at a constant room temperature (21°C) and humidity (80% RH). As a result, one freezing and thawing cycle was achieved between -18°C (24 hours) and 21°C (24 hours), and it took two days. Freezing and thawing (FT) sequences were selected as 1, 3, 7, 14 and 21. After each FT sequence, Atterberg limits and consolidation tests were carried out in accordance with ASTM standards. Liquid and plastic limits of soil samples, suddenly, were decreased after first FT cycle. That state is a sign of the clay mineral orientation due to freezing and thawing process. The soil classification of clayey sand was changed from "SC" to "SM" after first FT cycle. Furthermore, the coefficient of consolidation and permeability of grey clay had been increased by rising in FT cycles up to 7 and then continue to decline as well as these values of clayey sand start to decrease after 14 FT cycles.

Three-dimensional sensitivity distribution and sample volume of low-induction-number electromagnetic-induction instruments

USGS Publications Warehouse

Callegary, J.B.; Ferré, T.P.A.; Groom, R.W.

2012-01-01

There is an ongoing effort to improve the understanding of the correlation of soil properties with apparent soil electrical conductivity as measured by low-induction-number electromagnetic-induction (LIN FEM) instruments. At a minimum, the dimensions of LIN FEM instruments' sample volume, the spatial distribution of sensitivity within that volume, and implications for surveying and analyses must be clearly defined and discussed. Therefore, a series of numerical simulations was done in which a conductive perturbation was moved systematically through homogeneous soil to elucidate the three-dimensional sample volume of LIN FEM instruments. For a small perturbation with electrical conductivity similar to that of the soil, instrument response is a measure of local sensitivity (LS). Our results indicate that LS depends strongly on the orientation of the instrument's transmitter and receiver coils and includes regions of both positive and negative LS. Integration of the absolute value of LS from highest to lowest was used to contour cumulative sensitivity (CS). The 90% CS contour was used to define the sample volume. For both horizontal and vertical coplanar coil orientations, the longest dimension of the sample volume was at the surface along the main instrument axis with a length of about four times the intercoil spacing (s) with maximum thicknesses of about 1 and 0.3 s, respectively. The imaged distribution of spatial sensitivity within the sample volume is highly complex and should be considered in conjunction with the expected scale of heterogeneity before the use and interpretation of LIN FEM for mapping and profiling. ?? Soil Science Society of America.

Investigating controls on denitrification rates during managed aquifer recharge: Field studies of infiltration

NASA Astrophysics Data System (ADS)

Beganskas, S.; Gorski, G.; Fisher, A. T.; Weir, W. B.; Schmidt, C. M.; Saltikov, C.; Stoneburner, B.; Hernandez, J.; Harmon, R. E.; Weathers, T. S.

2016-12-01

We have designed field experiments to observe and quantify water quality improvement during infiltration in the shallow subsurface, as part of managed aquifer recharge (MAR). We are exploring how microbial diversity and denitrification rate respond to different infiltration rates and the presence or absence of carbon-rich reactive materials (woodchips or biochar). In 2015, we conducted a series of two-week-long field infiltration tests, and in 2016 we are running tests at a new site. For each test, nitrate-rich water (20-25 ppm NO3-N) was continuously applied to 1-m square plots instrumented to measure infiltration rates and sample subsurface water at multiple depths. Soil samples were collected before and after each test to assess microbial diversity. In 2015, we observed infiltration rates of 4-18 m/d, consistent with very sandy soils at our field site. All water samples had >20 ppm DOC, indicating that denitrification was unlikely carbon-limited. There was a net increase in DOC in fluids sampled below woodchips, but no change in DOC in samples from un-amended native soil. Up to 20% of NO3- was removed below woodchips on days with infiltration rates below 15 m/d. Nitrate removal was not observed in native soil, even though infiltration rates were considerably lower, 4 m/d. Isotopic analyses indicate that denitrification is likely the mechanism for nitrate removal. Genomic sequencing of soil microbes shows that microbial populations' relative abundance shifted significantly due to infiltration; further analyses are underway. Our results suggest that rapid infiltration can lead to oxic conditions unfavorable for denitrification, and that a carbon-rich reactive material (woodchips) may stimulate microbially-mediated denitrification. Our experimental design is a novel way to examine factors that impact water quality during infiltration. Nitrate, a pervasive groundwater contaminant, can be removed via denitrification during MAR under some conditions, depending on infiltration rate, available carbon, and substrate material. Our work has applications for designing MAR systems that effectively improve water supply and water quality.

Short-term microbial release during rain events from on-site sewers and cattle in a surface water source.

PubMed

Aström, Johan; Pettersson, Thomas J R; Reischer, Georg H; Hermansson, Malte

2013-09-01

The protection of drinking water from pathogens such as Cryptosporidium and Giardia requires an understanding of the short-term microbial release from faecal contamination sources in the catchment. Flow-weighted samples were collected during two rainfall events in a stream draining an area with on-site sewers and during two rainfall events in surface runoff from a bovine cattle pasture. Samples were analysed for human (BacH) and ruminant (BacR) Bacteroidales genetic markers through quantitative polymerase chain reaction (qPCR) and for sorbitol-fermenting bifidobacteria through culturing as a complement to traditional faecal indicator bacteria, somatic coliphages and the parasitic protozoa Cryptosporidium spp. and Giardia spp. analysed by standard methods. Significant positive correlations were observed between BacH, Escherichia coli, intestinal enterococci, sulphite-reducing Clostridia, turbidity, conductivity and UV254 in the stream contaminated by on-site sewers. For the cattle pasture, no correlation was found between any of the genetic markers and the other parameters. Although parasitic protozoa were not detected, the analysis for genetic markers provided baseline data on the short-term faecal contamination due to these potential sources of parasites. Background levels of BacH and BacR makers in soil emphasise the need to including soil reference samples in qPCR-based analyses for Bacteroidales genetic markers.

Testing the potential of bacterial branched tetraether membrane lipids as temperature proxy in peat and immature coal deposits

NASA Astrophysics Data System (ADS)

Weijers, J. W. H.; Steinmann, P.; Hopmans, E. C.; Basiliko, N.; Finkelstein, S. A.; Johnson, K. R.; Schouten, S.; Sinninghe Damsté, J. S.

2012-04-01

Branched glycerol dialkyl glycerol tetraether (brGDGT) membrane lipids occur ubiquitously in peat and soil. In soil, the degree of methylation and cyclisation of branched tetraethers (MBT index and CBT ratio, respectively) has shown to relate to both soil pH and annual mean air temperature (MAT). Using this relation, past annual MATs can be reconstructed by analysing brGDGTs in marine sediment records near large river outflows. More recently, the potential of this MBT/CBT proxy is also being explored in lakes. Despite being more abundant in peat than soils, however, the utility of the proxy has not yet been fully explored in peat records. Present day peat records generally extent back to the early Holocene, but if the MBT/CBT proxy were shown to be applicable in peat deposits, there is also potential to apply it to immature coal deposits like lignites, which could provide valuable snapshots of continental climate back to the early Cenozoic. Here results are presented of analyses of different peats in south eastern Canada, showing that the pH of peat along a nutrient gradient is rather well reflected by the CBT. Annual MAT reconstructions based on the MBT/CBT soil calibration, however, tend to overestimate measured MAT. This is also the case for peat analysed from the surface of Etang de la Gruère peat bog in the Swiss Jura Mountains. Along the 6m depth profile of this bog (~13ka), CBT-reconstructed pH is compared with in-situ measured pore water pH showing that the brGDGT composition does not reflect present-day in-situ conditions. Instead, it reflects a stratigraphic boundary between Carex and Sphagnum dominated peat at 4 m depth that is not present in the pore water profile, testifying to a 'fossil' nature of the brGDGTs down the peat bog. Analyses of three immature coals of the Argonne Premium Coal Series reveal that branched GDGTs are present in the most immature coal, the Beulah Zap lignite (Ro = 0.25%), and only just above detection limit in the Wyodak Anderson coal (Ro = 0.32%), both of about the same age (Late Palaeocene). In the more mature Illinois #6 coal (Ro = 0.46%), brGDGTs are completely absent. In the Denver Basin, a comparison is made between outcrop and drilled core samples of Palaeocene lignites. BrGDGTs are preserved in the core samples, although in low quantities compared to peat. Outcrop samples are clearly overprinted by modern soil derived brGDGTs, despite digging a meters deep trench, which shows the need to obtain fresh non-weathered samples by coring. Reconstructed annual MAT for both the Beulah Zap and the Denver Basin lignites are several degrees higher than estimates based on leaf margin and oxygen isotope analyses from the same sites. Both reconstructions do testify, nevertheless, to the warm continental conditions during the early Cenozoic of the central U.S.A.. Although further validation is required, potentially in the form of a specific peat calibration, these results do show potential for application of the MBT/CBT temperature proxy in peat and lignite deposits.

The influence of soil pH and humus content on received by Mehlich 3 method nutrients analysis results

NASA Astrophysics Data System (ADS)

Tonutare, Tonu; Krebstein, Kadri; Rodima, Ako; Kõlli, Raimo; Künnapas, Allan; Rebane, Jaanus; Penu, Priit; Vennik, Kersti; Soobik, Liina

2015-04-01

Soils provide vital ecosystem functions, playing an important role in our economy and in healthy living environment. However, soils are increasingly degrading in Europe and at the global level. Knowledge about the content of major plant available nutrients, i.e. calcium, magnesium, potassium and phosphorus, plays an important role in the sustainable soil management. Mobility of nutrients depends directly on the environmental conditions, two of the most important factors are the pH and organic matter content. Therefore it is essential to have correct information about the content and behaviour of the above named elements in soil, both from the environmental and agronomical viewpoint. During the last decades several extracting solutions which are suitable for the evaluation of nutrient status of soils have been developed for this purpose. One of them is called Mehlich 3 which is widely used in USA, Canada and some European countries (e.g. Estonia, Czech Republic) because of its suitability to extract several major plant nutrients from the soil simultaneously. There are several different instrumental methods used for the analysis of nutrient elements in the soil extract. Potassium, magnesium and calcium are widely analysed by the AAS (atomic absorption spectroscopic) method or by the ICP (inductively coupled plasma) spectroscopic methods. Molecular spectroscopy and ICP spectroscopy were used for the phosphorus determination. In 2011 a new multielemental instrumental method MP-AES (microwave plasma atomic emission spectroscopy) was added to them. Due to its lower detection limits and multielemental character, compared with AAS, and lower exploitation costs, compared with ICP, the MP-AES has a good potential to achieve a leading position in soil nutrient analysis in the future. The objective of this study was to investigate: (i) the impact of soil pH and humus content and (ii) applicability of MP-AES instrumental method for the determination of soil nutrients extracted according to Mehlich 3. For the experiment 100 soil samples with different content of organic matter and pH were used. The determination of Ca, Mg, K and P was analysed by MP and ICP methods and additionally P was analysed molecular spectroscopically. Within the framework of the study the regressions between MP and ICP methods were created for all the analysed elements, i.e. Ca, Mg, K and P. According to MP and ICP, the relationships between the analysed soil major nutrient contents at different soil humus levels and at different pH ranges were determined for the evaluation of their impact. The optimal instrumental settings for calcium, magnesium and potassium analysis, according to Mehlich 3 using MP-AES method, are reported.

Development of a portable petroleum by-products chemical sensor, phase 1 and 2 report.

DOT National Transportation Integrated Search

2006-07-31

We have proposed to tailor design nanoparticle based chemical sensors for the sensitive, selective and field portable analyses of soil samples for petroleum spill indicating hydrocarbons (such as benzene, toluene, ethyl-benzenes, xylenes, PCBs, trich...

The potential of on-line continuous leach ICP-MS analysis for linking trace elements to mineralogy

NASA Astrophysics Data System (ADS)

Roskam, Gerlinde; Verheul, Marc; Moraetis, Daniel; Giannakis, George; van Gaans, Pauline

2014-05-01

A set of five soil samples was subjected to an on-line continuous leach inductively coupled plasma mass spectrometry experiment, with progressively reactive solvents (0.01M CaCl2, 0.1 M HNO3, 1M HNO3, 4M HNO3) Each sample was packed in a quartz tube (Ø= 1 cm, length 2 cm) and diluted 1:1 with acid washed quartz to prevent clogging. The gas that was produced during the extraction was removed by leading the effluent into a small container, from where the sample was directly pumped into the ICP-MS. 115In was used as an internal standard. Continuous leach experiments have the advantage of real time (every 2 seconds) full elemental analysis. Mineral breakdown reactions can be monitored via the major elements. The trace elements associated with the minerals are monitored simultaneously, thus eliminating the uncertainties of host mineral-trace element combinations in traditional off-line sequential extractions. The continuous leach experimental data are correlated to XRD-results for mineralogy and total elemental concentrations. The soil samples used were collected from different sites in the Koiliaris River watershed, Crete, Greece 1). The selection of the sites was based on variability in bedrock (limestone, metamorphic and alluvial sediments) and current land use (grape farming, olive trees). Soils were sampled at two depths: at the surface and just above the bedrock. No large differences in the major elements between the two depths were measured. To provide background to the on-line sequential data, also total concentrations of the major elements were analysed by XRF and the mineralogy was analysed by XRD. The fraction <2mm was sieved and digested with HF, HClO4 and HNO3 for additional trace element analysis. 1) See related abstract Roskam et al., 2014: REE profiles in continuous leach ICP-MS (CL-ICP-MS) experiments in soil, linked to REE profiles in surface water in the Koiliaris River Critical Zone Observatory (CZO), Crete, Greece.

Spatial variability of atrazine dissipation in an allophanic soil.

PubMed

Müller, Karin; Smith, Roger E; James, Trevor K; Holland, Patrick T; Rahman, Anis

2003-08-01

The small-scale variability (0.5 m) of atrazine (6-chloro-N2-ethyl-N4-isopropyl-1,3,5-triazine-2,4-diamine) concentrations and soil water contents in a volcanic silt loam soil (Haplic Andosol, FAO system) was studied in an area of 0.1 ha. Descriptive and spatial statistics were used to analyse the data. On average we recovered 102% of the applied atrazine 2 h after the herbicide application (CV = 35%). An increase in the CV of the concentrations with depth could be ascribed to a combination of extrinsic and intrinsic factors. Both variables, atrazine concentrations and soil water content, showed a high horizontal variability. The semivariograms of the atrazine concentrations exhibited the pure nugget effect, no pattern could be determined along the 15.5-m long transects on any of the seven sampling days over a 55-day period. Soil water content had a weak spatial autocorrelation with a range of 6-10 m. The dissipation of atrazine analysed using a high vertical sampling resolution of 0.02 m to 0.2 m showed that 70% of the applied atrazine persisted in the upper 0.02-m layer of the soil for 12 days. After 55 days and 410 mm of rainfall the centre of the pesticide mass was still at a soil depth of 0.021 m. The special characteristics of the soil (high organic carbon content, allophanic clay) had a strong influence on atrazine sorption and mobility. The mass recovery after 55 days was low. The laboratory degradation rate for atrazine, determined in a complementary incubation study and corrected for the actual field temperature using the Arrhenius equation, only accounted for about 35% of the losses that occurred in the field. Results suggest field degradation rates to be more changeable in time and much faster than under controlled conditions. Preferential flow is discussed as a component of the field transport process.

Combining steam injection with hydraulic fracturing for the in situ remediation of the unsaturated zone of a fractured soil polluted by jet fuel.

PubMed

Nilsson, Bertel; Tzovolou, Dimitra; Jeczalik, Maciej; Kasela, Tomasz; Slack, William; Klint, Knud E; Haeseler, Frank; Tsakiroglou, Christos D

2011-03-01

A steam injection pilot-scale experiment was performed on the unsaturated zone of a strongly heterogeneous fractured soil contaminated by jet fuel. Before the treatment, the soil was stimulated by creating sub-horizontal sand-filled hydraulic fractures at three depths. The steam was injected through one hydraulic fracture and gas/water/non-aqueous phase liquid (NAPL) was extracted from the remaining fractures by applying a vacuum to extraction wells. The injection strategy was designed to maximize the heat delivery over the entire cell (10 m × 10 m × 5 m). The soil temperature profile, the recovered NAPL, the extracted water, and the concentrations of volatile organic compounds (VOCs) in the gas phase were monitored during the field test. GC-MS chemical analyses of pre- and post-treatment soil samples allowed for the quantitative assessment of the remediation efficiency. The growth of the heat front followed the configuration of hydraulic fractures. The average concentration of total hydrocarbons (g/kg of soil) was reduced by ∼ 43% in the upper target zone (depth = 1.5-3.9 m) and by ∼ 72% over the entire zone (depth = 1.5-5.5 m). The total NAPL mass removal based on gas and liquid stream measurements and the free-NAPL product were almost 30% and 2%, respectively, of those estimated from chemical analyses of pre- and post-treatment soil samples. The dominant mechanisms of soil remediation was the vaporization of jet fuel compounds at temperatures lower than their normal boiling points (steam distillation) enhanced by the ventilation of porous matrix due to the forced convective flow of air. In addition, the significant reduction of the NAPL mass in the less-heated deeper zone may be attributed to the counter-current imbibition of condensed water from natural fractures into the porous matrix and the gravity drainage associated with seasonal fluctuations of the water table. Copyright © 2010 Elsevier Ltd. All rights reserved.

Improving the delineation of hydrocarbon-impacted soils and water through induced polarization (IP) tomographies: a field study at an industrial waste land.

PubMed

Deceuster, John; Kaufmann, Olivier

2012-08-01

Without a good estimation of samples representativeness, the delineation of the contaminated plume extent and the evaluation of volumes of hydrocarbon-impacted soils may remain difficult. To contribute to this question, a time domain induced polarization (IP) field experiment was conducted on an industrial waste land. Boreholes were drilled to specify the local geological context. Cross-hole seismic tomographies were performed to extend borehole logs and to draw an interpreted geological cross-section. Soil samples taken during drillings were analysed in laboratory. A preliminary survey was conducted to locate the IP profile. The polarization signatures linked to the presence of clayey sediments were filtered out from the data set. Chargeability and resistivity depth soundings were computed and compared to mean concentrations of total organic products to overcome the data support issue between the geophysical models and the spot samples of soils. A logarithmic relation between chargeabilities and smoothed hydrocarbon concentrations in soils was found. Taking into account contaminant's concentration thresholds defined in local codes and regulations allows defining chargeability classes to delineate hotspots on this site. This showed that IP tomography can be an accurate screening methodology. A statistical methodology is proposed to assess the efficiency of the investigation strategy. Copyright © 2012 Elsevier B.V. All rights reserved.

Energy dispersive X-ray fluorescence (EDXRF) equipment calibration for multielement analysis of soil and rock samples

NASA Astrophysics Data System (ADS)

de Moraes, Alex Silva; Tech, Lohane; Melquíades, Fábio Luiz; Bastos, Rodrigo Oliveira

2014-11-01

Considering the importance to understand the behavior of the elements on different natural and/or anthropic processes, this study had as objective to verify the accuracy of a multielement analysis method for rocks characterization by using soil standards as calibration reference. An EDXRF equipment was used. The analyses were made on samples doped with known concentration of Mn, Zn, Rb, Sr and Zr, for the obtainment of the calibration curves, and on a certified rock sample to check the accuracy of the analytical curves. Then, a set of rock samples from Rio Bonito, located in Figueira city, Paraná State, Brazil, were analyzed. The concentration values obtained, in ppm, for Mn, Rb, Sr and Zr varied, respectively, from 175 to 1084, 7.4 to 268, 28 to 2247 and 15 to 761.

Using Apollo sites and soils to compositionally ground truth Diviner Lunar Radiometer observations

NASA Astrophysics Data System (ADS)

Greenhagen, B. T.; Lucey, P. G.; Song, E.; Thomas, I. R.; Bowles, N. E.; Donaldson Hanna, K. L.; Foote, E. J.; Paige, D. A.; Allen, C.

2012-12-01

Apollo landing sites and returned soils afford us a unique opportunity to "ground truth" Diviner Lunar Radiometer compositional observations, which are the first global, high resolution, thermal infrared measurements of an airless body. The Moon is the most accessible member of the most abundant class of solar system objects, which includes Mercury, asteroids, and icy satellites. And the Apollo samples returned from the Moon are the only extraterrestrial samples with known spatial context. Here we compare Diviner observations of Apollo landing sites and compositional and spectral laboratory measurements of returned Apollo soils. Diviner, onboard NASA's Lunar Reconnaissance Orbiter, has three spectral channels near 8 μm that were designed to characterize the mid-infrared emissivity maximum known as the Christiansen feature (CF), a well-studied indicator of silicate mineralogy. It has been observed that thermal infrared spectra measured in simulated lunar environment (SLE) are significantly altered from spectra measured under terrestrial or martian conditions, with enhanced CF contrast and shifted CF position relative to other spectral features. Therefore only thermal emission experiments conducted in SLE are directly comparable to Diviner data. With known compositions, Apollo landing sites and soils are important calibration points for the Diviner dataset, which includes all six Apollo sites at approximately 200 m spatial resolution. Differences in measured CFs caused by composition and space weathering are apparent in Diviner data. Analyses of Diviner observations and SLE measurements for a range of Apollo soils show good agreement, while comparisons to thermal reflectance measurements under ambient conditions do not agree well, which underscores the need for SLE measurements and validates our measurement technique. Diviner observations of Apollo landing sites are also correlated with geochemical measurements of Apollo soils from the Lunar Sample Compendium. In particular, the correlations between CF and FeO and Al2O3 are very strong, owing to the dependence on the feldspar-mafic ratio. Our analyses suggest that Diviner data may offer an independent measure of soil iron content from the existing optical and gamma-ray spectrometer datasets.

Airfall of metals from the Palmerton, PA, zinc plant: Distribution and preservation

NASA Astrophysics Data System (ADS)

Sahagian, D.; Peters, S.; Yasko, G.; Lofaro, J.; Burrows, J.; Blake, J.; Smith, K.

2008-12-01

The stacks of the NJ Zinc Co. created airfall deposits throughout the 20th century in the region surrounding Palmerton, PA. The deposition of zinc, cadmium, lead, and arsenic, led to the destruction of a forest ecosystem along the neighboring Kittatinny Ridge and metals contamination in the town and surrounding area. Although the smelter was closed in the 1980's, concerns linger over whether the soil still remains contaminated with elevated levels of smelter-derived metals. The present concentration and distribution of metals in the soil is the result of the initial (20th century) concentration an the processes of leaching, erosion, and biological uptake and dispersal that have proceeded since the smelter was shut down. At the site of the smelter, analyses of samples from 141 shallow soil pits had zinc concentrations up to 95 mg/kg, with a mean value of 14 mg/kg. Lead concentrations in the same soils had concentrations ranging up to 250 mg/kg, with a mean value of 72 mg/kg. We have now sampled a suite of soils from the "far field" region up to 25 km away from the smelter site to determine the spatial extent of remaining metals contamination. We dug soil pits and collected samples from the shallow O-horizon, the underlying A horizon (typically 2-4 cm depth), and the B-horizon at about 20-30 cm to determine not only the geographic distributions of metals, but also the depths at which these different metals are now found in the subsurface. The far field data distribution can now provide information for local communities regarding soils chemistry and help to guide land use practices within residential, business, and agricultural properties throughout the region. Concerns regarding contamination from metals airfall have played a role in depressing local economies, further exacerbating and perpetuating the economic impact of the closure of the smelter itself. Our analyses can potentially ameliorate such concerns by providing the actual distribution and concentrations of metals in the region surrounding Palmerton.

Using Apollo Sites and Soils to Compositionally Ground Truth Diviner Lunar Radiometer Observations

NASA Technical Reports Server (NTRS)

Greenhagen, Benjamin T.; Lucey, P. G.; Song, E.; Thomas, I R.; Bowles, N. E.; DonaldsonHanna, K. L.; Allen, C.; Foote, E. J.; Paige, D .A.

2012-01-01

Apollo landing sites and returned soils afford us a unique opportunity to "ground truth" Diviner Lunar Radiometer compositional observations, which are the first global, high resolution , thermal infrared measurements of an airless body. The Moon is the most accessible member of the most abundant class of solar system objects, which includes Mercury, asteroids, and icy satellites. And the Apollo samples returned from the Moon are the only extraterrestrial samples with known spatial context. Here we compare Diviner observations of Apollo landing sites and compositional and spectral laboratory measurements of returned Apollo soils. Diviner, onboard NASA's Lunar Reconnaissance Orbiter, has three spectral channels near 8 micron that were designed to characterize the mid-infrared emissivity maximum known as the Christiansen feature (CF), a well-studied indicator of silicate mineralogy. It has been observed that thermal infrared spectra measured in simulated lunar environment (SLE) are significantly altered from spectra measured under terrestrial or martian conditions, with enhanced CF contrast and shifted CF position relative to other spectral features. Therefore only thermal emission experiments conducted in SLE are directly comparable to Diviner data. With known compositions, Apollo landing sites and soils are important calibration points for the Diviner dataset, which includes all six Apollo sites at approximately 200 m spatial resolution. Differences in measured CFs caused by composition and space weathering are apparent in Diviner data. Analyses of Diviner observations and SLE measurements for a range of Apollo soils show good agreement, while comparisons to thermal reflectance measurements under ambient conditions do not agree well, which underscores the need for SLE measurements and validates our measurement technique. Diviner observations of Apollo landing sites are also correlated with geochemical measurements of Apollo soils from the Lunar Sample Compendium. In particular, the correlations between CF and FeO and AI203 are very strong, owing to the dependence on the feldspar-mafic ratio. Our analyses suggest that Diviner data may offer an independent measure of soil iron content from the existing optical and gamma-ray spectrometer datasets.

'Mister Badger' Pushing Mars Rock

NASA Technical Reports Server (NTRS)

1976-01-01

Viking's soil sampler collector arm successfully pushed a rock on the surface of Mars during the afternoon of Friday, October 8. The irregular-shaped rock was pushed several inches by the Lander's collector arm, which displaced the rock to the left of its original position, leaving it cocked slightly upward. Photographs and other information verified the successful rock push. Photo at left shows the soil sampler's collector head pushing against the rock, named 'Mister Badger' by flight controllers. Photo at right shows the displaced rock and the depression whence it came. Part of the soil displacement was caused by the collector s backhoe. A soil sample will be taken from the site Monday night, October 11. It will then be delivered to Viking s organic chemistry instrument for a series of analyses during the next few weeks. The sample is being sought from beneath a rock because scientists believe that, if there are life forms on Mars, they may seek rocks as shelter from the Sun s intense ultraviolet radiation.

Letter Report for Characterization of Biochar

DOE Office of Scientific and Technical Information (OSTI.GOV)

Amonette, James E.

2013-04-09

On 27 November 2012, a bulk biochar sample was received for characterization of selected physical and chemical properties. The main purpose of the characterization was to help determine the degree to which biochar would be suitable as a soil amendment to aid in growth of plants. Towards this end, analyses to determine specific surface, pH, cation-exchange capacity, water retention, and wettability (i.e. surface tension) were conducted. A second objective was to determine how uniform these properties were in the sample. Towards this end, the sample was separated into fractions based on initial particle size and on whether the material wasmore » from the external surface or the internal portion of the particle. Based on the results, the biochar has significant liming potentials, significant cation-retention capacities, and highly variable plant-available moisture retention properties that, under the most favorable circumstances, could be helpful to plants. As a consequence, it would be quite suitable for addition to acidic soils and should enhance the fertility of those soils.« less

High explosive spot test analyses of samples from Operable Unit (OU) 1111

DOE Office of Scientific and Technical Information (OSTI.GOV)

McRae, D.; Haywood, W.; Powell, J.

1995-01-01

A preliminary evaluation has been completed of environmental contaminants at selected sites within the Group DX-10 (formally Group M-7) area. Soil samples taken from specific locations at this detonator facility were analyzed for harmful metals and screened for explosives. A sanitary outflow, a burn pit, a pentaerythritol tetranitrate (PETN) production outflow field, an active firing chamber, an inactive firing chamber, and a leach field were sampled. Energy dispersive x-ray fluorescence (EDXRF) was used to obtain semi-quantitative concentrations of metals in the soil. Two field spot-test kits for explosives were used to assess the presence of energetic materials in the soilmore » and in items found at the areas tested. PETN is the major explosive in detonators manufactured and destroyed at Los Alamos. No measurable amounts of PETN or other explosives were detected in the soil, but items taken from the burn area and a high-energy explosive (HE)/chemical sump were contaminated. The concentrations of lead, mercury, and uranium are given.« less

Distribution of trace elements in sediment and soil from river Vardar Basin, Macedonia/Greece.

PubMed

Popov, Stanko Ilić; Stafilov, Trajče; Šajn, Robert; Tănăselia, Claudiu

2016-01-01

A systematic study was carried out to investigate the distribution of 59 elements in the sediment and soil samples collected from the river Vardar (Republic of Macedonia and Greece) and its major tributaries. The samples were collected from 28 sampling sites. Analyses were performed by inductively coupled plasma-mass spectrometry. R-mode factor analysis (FA) was used to identify and characterise element associations. Seven associations of elements were determined by the method of multivariate statistics. Every factor (Factors 1-3 and 6 and 7 as geogenic and Factors 4 and 5 as anthropogenic associations of elements) are examined and explained separately. The distribution of various elements showed that there is a presence of anthropogenic elements (Ag, Cd, Cu, Ge, Pb, Sn and Zn) introduced in the river sediments and soils from the mining, metallurgical, industrial and agricultural activities in Vardar River Basin, which covers most of the Republic of Macedonia and Central-northern part of Greece.

Methane production potential and microbial community structure for different forest soils

NASA Astrophysics Data System (ADS)

Matsumoto, Y.; Ueyama, M.; Kominami, Y.; Endo, R.; Tokumoto, H.; Hirano, T.; Takagi, K.; Takahashi, Y.; Iwata, H.; Harazono, Y.

2017-12-01

Forest soils are often considered as a methane (CH4) sink, but anaerobic microsites potentially decrease the sink at the ecosystem scale. In this study, we measured biological CH4 production potential of soils at various ecosystems, including upland forests, a lowland forest, and a bog, and analyzed microbial community structure using 16S ribosomal RNA (rRNA) genes. Three different types of soil samples (upland, bank of the stream, and center of the stream) were collected from Yamashiro forest meteorology research site (YMS) at Kyoto, Japan, on 11 May 2017. The soils were incubated at dark and anaerobic conditions under three different temperatures (37°C, 25°C, and 10°C) from 9 June 2017. The upland soils emitted CH4 with largest yields among the three soils at 37°C and 25°C, although no CH4 emission was observed at 10°C. For all temperature ranges, the emission started to increase with a 14- to 20-days lag after the start of the incubation. The lag indicates a slow transition to anaerobic conditions; as dissolved oxygen in water decreased, the number and/or activity of anaerobic bacteria like methanogens increased. The soils at the bank and center of the stream emitted CH4 with smaller yields than the upland soils in the three temperature ranges. The microbial community analyses indicate that methanogenic archaea presented at the three soils including the aerobic upland soil, but compositions of methanogenic archaea were different among the soils. In upland soils, hydrogenotrophic methanogens, such as Methanobacterium and Methanothermobacter, consisted almost all of the total methanogen detected. In the bank and center of the stream, soils contained approximately 10-25% of acetoclastic methanogens, such as Methanosarcina and Methanosaeta, among the total methanogen detected. Methanotrophs, a genus of Methanobacteriaceae, was appeared in the all types of soils. We will present results from same incubation and 16S rRNA analyses for other ecosystems, including a larch forest on volcanic soils, a young larch forest on Gleyic Cambisol, and a boreal bog and a lowland forest on permafrost. Comparing various soils from temperate and boreal ecosystems, we will discuss differences of biogenic CH4 production potential among the soils with the microbial community analyses.

Multiscale responses of soil stability and invasive plants to removal of non-native grazers from an arid conservation reserve

USGS Publications Warehouse

Beever, E.A.; Huso, M.; Pyke, D.A.

2006-01-01

Disturbances and ecosystem recovery from disturbance both involve numerous processes that operate on multiple spatial and temporal scales. Few studies have investigated how gradients of disturbance intensity and ecosystem responses are distributed across multiple spatial resolutions and also how this relationship changes through time during recovery. We investigated how cover of non-native species and soil-aggregate stability (a measure of vulnerability to erosion by water) in surface and subsurface soils varied spatially during grazing by burros and cattle and whether patterns in these variables changed after grazer removal from Mojave National Preserve, California, USA. We compared distance from water and number of ungulate defecations - metrics of longer-term and recent grazing intensity, respectively, - as predictors of our response variables. We used information-theoretic analyses to compare hierarchical linear models that accounted for important covariates and allowed for interannual variation in the disturbance-response relationship at local and landscape scales. Soil stability was greater under perennial vegetation than in bare interspaces, and surface soil stability decreased with increasing numbers of ungulate defecations. Stability of surface samples was more affected by time since removal of grazers than was stability of subsurface samples, and subsurface soil stability in bare spaces was not related to grazing intensity, time since removal, or any of our other predictors. In the high rainfall year (2003) after cattle had been removed for 1-2 years, cover of all non-native plants averaged nine times higher than in the low-rainfall year (2002). Given the heterogeneity in distribution of large-herbivore impacts that we observed at several resolutions, hierarchical analyses provided a more complete understanding of the spatial and temporal complexities of disturbance and recovery processes in arid ecosystems. ?? 2006 Blackwell Publishing Ltd.

Multi-scale responses of soil stability and invasive plants to removal of non-native grazers from an arid conservation reserve

USGS Publications Warehouse

Beever, Erik A.; Huso, Manuela M. P.; Pyke, David A.

2006-01-01

Disturbances and ecosystem recovery from disturbance both involve numerous processes that operate on multiple spatial and temporal scales. Few studies have investigated how gradients of disturbance intensity and ecosystem responses are distributed across multiple spatial resolutions and also how this relationship changes through time during recovery. We investigated how cover of non-native species and soil-aggregate stability (a measure of vulnerability to erosion by water) in surface and subsurface soils varied spatially during grazing by burros and cattle and whether patterns in these variables changed after grazer removal from Mojave National Preserve, California, USA. We compared distance from water and number of ungulate defecations — metrics of longer-term and recent grazing intensity, respectively, — as predictors of our response variables. We used information-theoretic analyses to compare hierarchical linear models that accounted for important covariates and allowed for interannual variation in the disturbance–response relationship at local and landscape scales. Soil stability was greater under perennial vegetation than in bare interspaces, and surface soil stability decreased with increasing numbers of ungulate defecations. Stability of surface samples was more affected by time since removal of grazers than was stability of subsurface samples, and subsurface soil stability in bare spaces was not related to grazing intensity, time since removal, or any of our other predictors. In the high rainfall year (2003) after cattle had been removed for 1–2 years, cover of all non-native plants averaged nine times higher than in the low-rainfall year (2002). Given the heterogeneity in distribution of large-herbivore impacts that we observed at several resolutions, hierarchical analyses provided a more complete understanding of the spatial and temporal complexities of disturbance and recovery processes in arid ecosystems.

Characterizing mineral dusts and other aerosols from the Middle East--Part 2: grab samples and re-suspensions.

PubMed

Engelbrecht, Johann P; McDonald, Eric V; Gillies, John A; Jayanty, R K M Jay; Casuccio, Gary; Gertler, Alan W

2009-02-01

The purpose of the Enhanced Particulate Matter Surveillance Program was to provide scientifically founded information on the chemical and physical properties of dust collected during a period of approximately 1 year in Djibouti, Afghanistan (Bagram, Khowst), Qatar, United Arab Emirates, Iraq (Balad, Baghdad, Tallil, Tikrit, Taji, Al Asad), and Kuwait (northern, central, coastal, and southern regions). To fully understand mineral dusts, their chemical and physical properties, as well as mineralogical inter-relationships, were accurately established. In addition to the ambient samples, bulk soil samples were collected at each of the 15 sites. In each case, approximately 1 kg of soil from the top 10 mm at a previously undisturbed area near the aerosol sampling site was collected. The samples were air-dried and sample splits taken for soil analysis. Further sample splits were sieved to separate the < 38 micro m particle fractions for mineralogical analysis. Examples of major-element and trace-element chemistry, mineralogy, and other physical properties of the 15 grab samples are presented. The purpose of the trace-element analysis was to measure levels of potentially harmful metals while the major-element and ion-chemistry analyses provided an estimate of mineral components. X-ray diffractometry provided a measure of the mineral content of the dust. Scanning electron microscopy with energy dispersive spectroscopy was used to analyze chemical composition of small individual particles. From similarities in the chemistry and mineralogy of re-suspended and ambient sample sets, it is evident that portions of the ambient dust are from local soils.

Linking Microbial Community Structure, Activity and Carbon Cycling in Biological Soil Crust

NASA Astrophysics Data System (ADS)

Swenson, T.; Karaoz, U.; Swenson, J.; Bowen, B.; Northen, T.

2016-12-01

Soils play a key role in the global carbon cycle, but the relationships between soil microbial communities and metabolic pathways are poorly understood. In this study, biological soil crusts (biocrusts) from the Colorado Plateau are being used to develop soil metabolomics methods and statistical models to link active microbes to the abundance and turnover of soil metabolites and to examine the detailed substrate and product profiles of individual soil bacteria isolated from biocrust. To simulate a pulsed activity (wetting) event and to analyze the subsequent correlations between soil metabolite dynamics, community structure and activity, biocrusts were wetup with water and samples (porewater and DNA) were taken at various timepoints up to 49.5 hours post-wetup. DNA samples were sequenced using the HiSeq sequencing platform and porewater metabolites were analyzed using untargeted liquid chromatography/ mass spectrometry. Exometabolite analysis revealed the release of a breadth of metabolites including sugars, amino acids, fatty acids, dicarboxylic acids, nucleobases and osmolytes. In general, many metabolites (e.g. amino acids and nucleobases) immediately increased in abundance following wetup and then steadily decreased. However, a few continued to increase over time (e.g. xanthine). Interestingly, in a previous study exploring utilization of soil metabolites by sympatric bacterial isolates from biocrust, we observed xanthine to be released by some Bacilli sp. Furthermore, our current metagenomics data show that members of the Paenibacillaceae family increase in abundance in late wetup samples. Previous 16S amplicon data also show a "Firmicutes bloom" following wetup with the new metagenomic data resolving this at genome-level. Our continued metagenome and exometabolome analyses are allowing us to examine complex pulsed-activity events in biocrust microbial communities specifically by correlating the abundance of microbes to the release of soil metabolites. Ultimately, these approaches will provide an important complement to sequencing efforts linking soil microbes and soil metabolites to enable genomic sciences approaches for understanding and modeling soil carbon cycling.

Multi-component determination of atmospheric semi-volatile organic compounds in soils and vegetation from Tarragona County, Catalonia, Spain.

PubMed

Domínguez-Morueco, Noelia; Carvalho, Mariana; Sierra, Jordi; Schuhmacher, Marta; Domingo, José Luis; Ratola, Nuno; Nadal, Martí

2018-08-01

Tarragona County (Spain) is home to the most important chemical/petrochemical industrial complex in Southern Europe, which raises concerns about the presence and effects of the numerous environmental contaminants. In order to assess the levels and patterns of five classes of semi-volatile organic compounds (SVOCs) - polycyclic aromatic hydrocarbons (PAHs), synthetic musks (SMs), polychlorinated biphenyls (PCBs), brominated flame retardants (BFRs) and one organochlorine pesticide, hexachlorobenzene (HCB), 27 samples of soil and vegetation (Piptatherum L.) from different areas (petrochemical, chemical, urban/residential, and background) of Tarragona County were analysed. The results show that PAHs levels in soils ranged from 45.12 to 158.00ng/g and the urban areas presented the highest concentrations, mainly associated with the presence of a nearby highway and several roads with heavy traffic. PAHs levels in vegetation samples ranged from 42.13 to 80.08ng/g, where the greatest influence came from the urban and petrochemical areas. In the case of SMs, levels in soils and vegetation samples ranged from 5.42 to 10.04ng/g and from 4.08 to 17.94ng/g, respectively, and in both cases, background areas (at least 30km away from the main SVOCs emission sources) showed the highest levels, suggesting an influence of the personal care products derived from beach-related tourism in the coast. PCBs (from 6.62 to 14.07ng/g in soils; from 0.52 to 4.41ng/g in vegetation) prevailed in the chemical area in both matrices, probably associated with the presence of two sub-electrical stations located in the vicinities. In general terms, BFRs and HCB values recorded in soil and vegetation samples were quite similar between matrices and sampling areas. Copyright © 2018. Published by Elsevier B.V.

Uncertainties in detecting decadal change in extractable soil elements in Northern Forests

NASA Astrophysics Data System (ADS)

Bartlett, O.; Bailey, S. W.; Ducey, M. J.

2016-12-01

Northern Forest ecosystems have been or are being impacted by land use change, forest harvesting, acid deposition, atmospheric CO2 enrichment, and climate change. Each of these has the potential to modify soil forming processes, and the resulting chemical stocks. Horizontal and vertical variations in concentrations complicate determination of temporal change. This study evaluates sample design, sample size, and differences among observers as sources of uncertainty when quantifying soil temporal change over regional scales. Forty permanent, northern hardwood, monitoring plots were established on the White Mountain National Forest in central New Hampshire and western Maine. Soil pits were characterized and sampled by genetic horizon at plot center in 2001 and resampled again in 2014 two-meters on contour from the original sampling location. Each soil horizon was characterized by depth, color, texture, structure, consistency, boundaries, coarse fragments, and roots from the forest floor to the upper C horizon, the relatively unaltered glacial till parent material. Laboratory analyses included pH in 0.01 M CaCl2 solution and extractable Ca, Mg, Na, K, Al, Mn, and P in 1 M NH4OAc solution buffered at pH 4.8. Significant elemental differences were identified by genetic horizon from paired t-tests (p ≤ 0.05) indicate temporal change across the study region. Power analysis, 0.9 power (α = 0.05), revealed sampling size was appropriate within this region to detect concentration change by genetic horizon using a stratified sample design based on topographic metrics. There were no significant differences between observers' descriptions of physical properties. As physical properties would not be expected to change over a decade, this suggests spatial variation in physical properties between the pairs of sampling pits did not detract from our ability to detect temporal change. These results suggest that resampling efforts within a site, repeated across a region, to quantify elemental change by carefully described genetic horizons is an appropriate method of detecting soil temporal change in this region. Sample size and design considerations from this project will have direct implications for future monitoring programs to characterize change in soil chemistry.

Ammonia-Oxidizing Archaea Show More Distinct Biogeographic Distribution Patterns than Ammonia-Oxidizing Bacteria across the Black Soil Zone of Northeast China.

PubMed

Liu, Junjie; Yu, Zhenhua; Yao, Qin; Sui, Yueyu; Shi, Yu; Chu, Haiyan; Tang, Caixian; Franks, Ashley E; Jin, Jian; Liu, Xiaobing; Wang, Guanghua

2018-01-01

Black soils (Mollisols) of northeast China are highly productive and agriculturally important for food production. Ammonia-oxidizing microbes play an important role in N cycling in the black soils. However, the information related to the composition and distribution of ammonia-oxidizing microbes in the black soils has not yet been addressed. In this study, we used the amoA gene to quantify the abundance and community composition of ammonia-oxidizing archaea (AOA) and ammonia-oxidizing bacteria (AOB) across the black soil zone. The amoA abundance of AOA was remarkably larger than that of AOB, with ratios of AOA/AOB in the range from 3.1 to 91.0 across all soil samples. The abundance of AOA amoA was positively correlated with total soil C content ( p < 0.001) but not with soil pH ( p > 0.05). In contrast, the abundance of AOB amoA positively correlated with soil pH ( p = 0.009) but not with total soil C. Alpha diversity of AOA did not correlate with any soil parameter, however, alpha diversity of AOB was affected by multiple soil factors, such as soil pH, total P, N, and C, available K content, and soil water content. Canonical correspondence analysis indicated that the AOA community was mainly affected by the sampling latitude, followed by soil pH, total P and C; while the AOB community was mainly determined by soil pH, as well as total P, C and N, water content, and sampling latitude, which highlighted that the AOA community was more geographically distributed in the black soil zone of northeast China than AOB community. In addition, the pairwise analyses showed that the potential nitrification rate (PNR) was not correlated with alpha diversity but weakly positively with the abundance of the AOA community ( p = 0.048), whereas PNR significantly correlated positively with the richness ( p = 0.003), diversity ( p = 0.001) and abundance ( p < 0.001) of the AOB community, which suggested that AOB community might make a greater contribution to nitrification than AOA community in the black soils when ammonium is readily available.

Ammonia-Oxidizing Archaea Show More Distinct Biogeographic Distribution Patterns than Ammonia-Oxidizing Bacteria across the Black Soil Zone of Northeast China

PubMed Central

Liu, Junjie; Yu, Zhenhua; Yao, Qin; Sui, Yueyu; Shi, Yu; Chu, Haiyan; Tang, Caixian; Franks, Ashley E.; Jin, Jian; Liu, Xiaobing; Wang, Guanghua

2018-01-01

Black soils (Mollisols) of northeast China are highly productive and agriculturally important for food production. Ammonia-oxidizing microbes play an important role in N cycling in the black soils. However, the information related to the composition and distribution of ammonia-oxidizing microbes in the black soils has not yet been addressed. In this study, we used the amoA gene to quantify the abundance and community composition of ammonia-oxidizing archaea (AOA) and ammonia-oxidizing bacteria (AOB) across the black soil zone. The amoA abundance of AOA was remarkably larger than that of AOB, with ratios of AOA/AOB in the range from 3.1 to 91.0 across all soil samples. The abundance of AOA amoA was positively correlated with total soil C content (p < 0.001) but not with soil pH (p > 0.05). In contrast, the abundance of AOB amoA positively correlated with soil pH (p = 0.009) but not with total soil C. Alpha diversity of AOA did not correlate with any soil parameter, however, alpha diversity of AOB was affected by multiple soil factors, such as soil pH, total P, N, and C, available K content, and soil water content. Canonical correspondence analysis indicated that the AOA community was mainly affected by the sampling latitude, followed by soil pH, total P and C; while the AOB community was mainly determined by soil pH, as well as total P, C and N, water content, and sampling latitude, which highlighted that the AOA community was more geographically distributed in the black soil zone of northeast China than AOB community. In addition, the pairwise analyses showed that the potential nitrification rate (PNR) was not correlated with alpha diversity but weakly positively with the abundance of the AOA community (p = 0.048), whereas PNR significantly correlated positively with the richness (p = 0.003), diversity (p = 0.001) and abundance (p < 0.001) of the AOB community, which suggested that AOB community might make a greater contribution to nitrification than AOA community in the black soils when ammonium is readily available. PMID:29497404

New record of Scedosporium dehoogii from Chile: Phylogeny and susceptibility profiles to classic and novel putative antifungal agents.

PubMed

Alvarez, Eduardo; Sanhueza, Camila

Scedosporium species are considered emerging agents causing illness in immunocompromised patients. In Chile, only Scedosporium apiospermum, Scedosporium boydii and Lomentospora prolificans haven been reported previously. The study aimed to characterize genetically Scedosporium dehoogii strains from Chilean soil samples, and assessed the antifungal susceptibility profile to classic and novel putative antifungal molecules. In 2014, several samples were obtained during a survey of soil fungi in urban areas from Chile. Morphological and phylogenetic analyses of the internal transcribed spacer region (ITS), tubulin (TUB), and calmodulin (CAL) sequences were performed. In addition, the susceptibility profiles to classic antifungal and new putative antifungal molecules were determined. Four strains of Scedosporium dehoogii were isolated from soil samples. The methodology confirmed the species (reported here as a new record for Chile). Antifungal susceptibility testing demonstrates the low activity of terpenes (α-pinene and geraniol) against this species. Voriconazole (VRC), posaconazole (PSC), and the hydroxyquinolines (clioquinol, and 5,7-dibromo-8-hydroxyquinoline) showed the best antifungal activity. Our results demonstrate that Scedosporium dehoogii is present in soil samples from Chile. This study shows also that hydroxyquinolines have potential as putative antifungal molecules. Copyright © 2016 Asociación Española de Micología. Publicado por Elsevier España, S.L.U. All rights reserved.

Analysis of pesticide residues in strawberries and soils by GC-MS/MS, LC-MS/MS and two-dimensional GC-time-of-flight MS comparing organic and integrated pest management farming.

PubMed

Fernandes, Virgínia C; Lehotay, Steven J; Geis-Asteggiante, Lucía; Kwon, Hyeyoung; Mol, Hans G J; van der Kamp, Henk; Mateus, Nuno; Domingues, Valentina F; Delerue-Matos, Cristina

2014-01-01

This study analysed 22 strawberry and soil samples after their collection over the course of 2 years to compare the residue profiles from organic farming with integrated pest management practices in Portugal. For sample preparation, we used the citrate-buffered version of the quick, easy, cheap, effective, rugged, and safe (QuEChERS) method. We applied three different methods for analysis: (1) 27 pesticides were targeted using LC-MS/MS; (2) 143 were targeted using low pressure GC-tandem mass spectrometry (LP-GC-MS/MS); and (3) more than 600 pesticides were screened in a targeted and untargeted approach using comprehensive, two-dimensional gas chromatography time-of-flight mass spectrometry (GC × GC-TOF-MS). Comparison was made of the analyses using the different methods for the shared samples. The results were similar, thereby providing satisfactory confirmation of both similarly positive and negative findings. No pesticides were found in the organic-farmed samples. In samples from integrated pest management practices, nine pesticides were determined and confirmed to be present, ranging from 2 µg kg(-1) for fluazifop-p-butyl to 50 µg kg(-1) for fenpropathrin. Concentrations of residues in strawberries were less than European maximum residue limits.

Quantitative analysis of the extent of heavy-metal contamination in soils near Picher, Oklahoma, within the Tar Creek Superfund Site.

PubMed

Beattie, Rachelle E; Henke, Wyatt; Davis, Conor; Mottaleb, M Abdul; Campbell, James H; McAliley, L Rex

2017-04-01

The Tri-State Mining District of Missouri, Kansas and Oklahoma was the site of large-scale mining operations primarily for lead and zinc until the mid-1950s. Although mining across the area has ceased, high concentrations of heavy metals remain in the region's soil and water systems. The town of Picher, Ottawa County, OK, lies within this district and was included in the Tar Creek Superfund Site by the U.S. Environmental Protection Agency in 1980 due to extensive contamination. To elucidate the extent of heavy-metal contamination, a soil-chemistry survey of the town of Picher was conducted. Samples (n = 111) were collected from mine tailings, locally known as chat, in Picher and along cardinal-direction transects within an 8.05-km radius of the town in August 2015. Samples were analyzed for soil pH, moisture, and metal content. Inductively Coupled Plasma Optical Emission Spectrometry (ICP-OES) analyses of 20 metals showed high concentrations of lead (>1000 ppm), cadmium (>40 ppm) and zinc (>4000 ppm) throughout the sampled region. Soil moisture content ranged from 0.30 to 35.9%, and pH values ranged from 5.14 to 7.42. MANOVA of metal profiles determined that soils collected from the north transect and chat were significantly different (p < 0.01) than other sampled directions. Lead, cadmium and zinc were correlated with one another. These data show an unequal distribution of contamination surrounding the Picher mining site. Mapping heavy-metal contamination in these soils represents the first step in understanding the distribution of these contaminants at the Picher mining site. Copyright © 2016 Elsevier Ltd. All rights reserved.

Abundance and diversity of CO2-fixing bacteria in grassland soils close to natural carbon dioxide springs.

PubMed

Videmsek, Urska; Hagn, Alexandra; Suhadolc, Marjetka; Radl, Viviane; Knicker, Heike; Schloter, Michael; Vodnik, Dominik

2009-07-01

Gaseous conditions at natural CO2 springs (mofettes) affect many processes in these unique ecosystems. While the response of plants to extreme and fluctuating CO2 concentrations ([CO2]) is relatively well documented, little is known on microbial life in mofette soil. Therefore, it was the aim of this study to investigate the abundance and diversity of CO2-fixing bacteria in grassland soils in different distances to a natural carbon dioxide spring. Samples of the same soil type were collected from the Stavesinci mofette, a natural CO2 spring which is known for very pure CO2 emissions, at different distances from the CO2 releasing vents, at locations that clearly differed in soil CO2 efflux (from 12.5 to over 200 micromol CO2 m(-2) s(-1) yearly average). Bulk and rhizospheric soil samples were included into analyses. The microbial response was followed by a molecular analysis of cbbL genes, encoding for the large subunit of RubisCO, a carboxylase which is of crucial importance for C assimilation in chemolitoautotrophic microbes. In all samples analyzed, the "red-like" type of cbbL genes could be detected. In contrast, the "green-like" type of cbbL could not be measured by the applied technique. Surprisingly, a reduction of "red-like" cbbL genes copies was observed in bulk soil and rhizosphere samples from the sites with the highest CO2 concentrations. Furthermore, the diversity pattern of "red-like" cbbL genes changed depending on the CO(2) regime. This indicates that only a part of the autotrophic CO2-fixing microbes could adapt to the very high CO2 concentrations and adverse life conditions that are governed by mofette gaseous regime.

Temporal and spatial variation of polychlorinated biphenyls (PCBs) contamination in environmental compartments of highly polluted area in Central Russia.

PubMed

Malina, Natalia; Mazlova, Elena A

2017-10-01

This study highlights the fact that serious contamination from polychlorinated biphenyls (PCBs) still exists in Serpukhov City (Russia). The research help to determine the temporal (16- and 24-year periods) and spatial PCBs distribution in the environmental compartments of the studied region. Samples of soil, sediments, water and plants were analysed in order to establish their contamination levels. The most recent data on the Serpukhov City's soil contamination showed that the PCBs concentrations varies from 0.0009 to 1169 mg/kg depending on the sampling point and the distance from the pollution source. The temporal trends of the contamination distribution with the soil depth showed contamination migration in the upper soil layers of the highly polluted site. The high level of water pollution (11.5 μg/L) in the proximity to the contamination source and the sediments contamination (0.098-119 mg/kg) were determined, as well as the water migration pathways of the PCBs that were prevalent in the studied region. The PCB congener group (by the level of chlorination) analysis showed that heptachlorinated biphenyls were only found in the soils in close proximity to the contamination place, while biphenyls with Cl ≤ 6 were found in the soil samples downstream of the condenser plant and with Cl ≤ 5 in the soil samples upstream of the plant. The plant uptake of PCBs, even on the extremely contaminated site, was shown. In turn, this research present new knowledge necessary for the development of a contaminated territory remediation strategy. Copyright © 2017 Elsevier Ltd. All rights reserved.

A laboratory procedure for measuring and georeferencing soil colour

NASA Astrophysics Data System (ADS)

Marques-Mateu, A.; Balaguer-Puig, M.; Moreno-Ramon, H.; Ibanez-Asensio, S.

2015-04-01

Remote sensing and geospatial applications very often require ground truth data to assess outcomes from spatial analyses or environmental models. Those data sets, however, may be difficult to collect in proper format or may even be unavailable. In the particular case of soil colour the collection of reliable ground data can be cumbersome due to measuring methods, colour communication issues, and other practical factors which lead to a lack of standard procedure for soil colour measurement and georeferencing. In this paper we present a laboratory procedure that provides colour coordinates of georeferenced soil samples which become useful in later processing stages of soil mapping and classification from digital images. The procedure requires a laboratory setup consisting of a light booth and a trichromatic colorimeter, together with a computer program that performs colour measurement, storage, and colour space transformation tasks. Measurement tasks are automated by means of specific data logging routines which allow storing recorded colour data in a spatial format. A key feature of the system is the ability of transforming between physically-based colour spaces and the Munsell system which is still the standard in soil science. The working scheme pursues the automation of routine tasks whenever possible and the avoidance of input mistakes by means of a convenient layout of the user interface. The program can readily manage colour and coordinate data sets which eventually allow creating spatial data sets. All the tasks regarding data joining between colorimeter measurements and samples locations are executed by the software in the background, allowing users to concentrate on samples processing. As a result, we obtained a robust and fully functional computer-based procedure which has proven a very useful tool for sample classification or cataloging purposes as well as for integrating soil colour data with other remote sensed and spatial data sets.

Metagenome-Wide Association Study and Machine Learning Prediction of Bulk Soil Microbiome and Crop Productivity

PubMed Central

Chang, Hao-Xun; Haudenshield, James S.; Bowen, Charles R.; Hartman, Glen L.

2017-01-01

Areas within an agricultural field in the same season often differ in crop productivity despite having the same cropping history, crop genotype, and management practices. One hypothesis is that abiotic or biotic factors in the soils differ between areas resulting in these productivity differences. In this study, bulk soil samples collected from a high and a low productivity area from within six agronomic fields in Illinois were quantified for abiotic and biotic characteristics. Extracted DNA from these bulk soil samples were shotgun sequenced. While logistic regression analyses resulted in no significant association between crop productivity and the 26 soil characteristics, principal coordinate analysis and constrained correspondence analysis showed crop productivity explained a major proportion of the taxa variance in the bulk soil microbiome. Metagenome-wide association studies (MWAS) identified more Bradyrhizodium and Gammaproteobacteria in higher productivity areas and more Actinobacteria, Ascomycota, Planctomycetales, and Streptophyta in lower productivity areas. Machine learning using a random forest method successfully predicted productivity based on the microbiome composition with the best accuracy of 0.79 at the order level. Our study showed that crop productivity differences were associated with bulk soil microbiome composition and highlighted several nitrogen utility-related taxa. We demonstrated the merit of MWAS and machine learning for the first time in a plant-microbiome study. PMID:28421041

Evolution of vegetation and soil nutrients after uranium mining in Los Ratones mine (Cáceres, Spain).

PubMed

Pérez-Fernández, María A; Vera-Tomé, Feliciano; Blanco-Rodríguez, María P; Lozano, Juan C

2014-06-01

The evolution of vegetation structure following mine rehabilitation is rather scarce in the literature. The concentration of long-lived radionuclides of the (238)U series might have harmful effects on living organisms. We studied soil properties and the natural vegetation occurring along a gradient in Los Ratones, an area rehabilitated after uranium mining located in Cáceres, Spain. Soil and vegetation were sampled seasonally and physical and chemical properties of soil were analysed, including natural isotopes of (238)U, (230)Th, (226)Ra and (210)Pb. Species richness, diversity, evenness and plant cover were estimated and correlated in relation to soil physical and chemical variables. The location of the sampling sites along a gradient had a strong explanatory effect on the herbaceous species, as well as the presence of shrubs and trees. Seasonal effects of the four natural isotopes were observed in species richness, species diversity and plant cover; these effects were directly related to the pH values in the soil, this being the soil property that most influences the plant distribution. Vegetation in the studied area resembles that of the surroundings, thus proving that the rehabilitation carried out in Los Ratones mine was successful in terms of understorey cover recovery.

Remarkably constant PAH concentrations in Swiss soils over the last 30 years.

PubMed

Gubler, Andreas; Wächter, Daniel; Blum, Franziska; Bucheli, Thomas D

2015-10-01

Although polycyclic aromatic hydrocarbons (PAH) are of concern due to their carcinogenic, mutagenic, and teratogenic properties and their ubiquitous occurrence in environmental compartments, only few studies assessed the temporal evolutions of PAH contents of soils over extended time periods. The Swiss Soil Monitoring Network NABO runs long-term monitoring sites resampled every five years since the 1980s. In the present study, soil (0-20 cm) samples collected from 1985 through 2013 at 25 selected monitoring sites were analysed for the 16 priority PAH according to the U.S. EPA and five PAH marker substances. We observed divergent trends for light PAH, such as naphthalene and phenanthrene, compared with heavy PAH, such as benzo[a]pyrene and benzo[ghi]perylene. Whereas the former showed decreasing concentrations since the late 1980s, no significant trends were found for the latter. Furthermore, the analyses showed that naphthalene contents decreased most strongly at rural sites featuring low population densities, while phenanthrene contents generally decreased most strongly at semi-rural sites. The deviating evolutions of light and heavy PAH were mainly attributed to their differing physico-chemical properties. Temporal evolutions in soils contradict emission inventory data suggesting PAH emissions to decline since the 1980s.

Variations in the Rate of Infestations of Dogs with Zoonotic Nematodes and the Contamination of Soil in Different Environments

PubMed Central

Demkowska-Kutrzepa, Marta; Borecka, Anna; Meisner, Michał; Tomczuk, Krzysztof; Roczeń-Karczmarz, Monika; Kłapeć, Teresa; Abbass, Zahrai; Cholewa, Alicja

2017-01-01

Companion animals are an important aspect in human life. However, they may also be considered a source of pathogens. An example of zoonotic parasitoses is toxocarosis or cutaneous larva migrans (CLM). The aim of the study was to detect zoonotic nematodes of dogs living in different areas and the intensity of contamination in parasite polluted environments that are hazardous to human health. The fecal samples were examined using standard flotation and decantation methods as well as McMaster’s quantitative technique. The soil samples in urban and rural areas were examined using a modified flotation method as described by Quinn et al. Statistical analyses were performed by IBM SPSS Statistics Version 23. The overall prevalence of parasites in dogs was 38%, 17.02% and 56.60% from urban and rural areas, respectively. The percentage values of nematodes important for human health (Toxocara canis, Ancylostomatidae, Trichuris vulpis) remained at the same level (16%). The infected dogs were dominated by a single parasite species, the main was T. canis (28.95%). In total, 54.30% of the soil samples were contaminated with parasite eggs. The contamination of urban and rural sandpits was 40% and 60%, respectively. The molecular examinations of soil samples using LAMP (loop-mediated isothermal amplification) confirmed the presence of nematode eggs of the species T. canis in all samples previously classified as positive PMID:28862690

Variations in the Rate of Infestations of Dogs with Zoonotic Nematodes and the Contamination of Soil in Different Environments.

PubMed

Studzińska, Maria Bernadeta; Demkowska-Kutrzepa, Marta; Borecka, Anna; Meisner, Michał; Tomczuk, Krzysztof; Roczeń-Karczmarz, Monika; Kłapeć, Teresa; Abbass, Zahrai; Cholewa, Alicja

2017-09-01

Companion animals are an important aspect in human life. However, they may also be considered a source of pathogens. An example of zoonotic parasitoses is toxocarosis or cutaneous larva migrans (CLM). The aim of the study was to detect zoonotic nematodes of dogs living in different areas and the intensity of contamination in parasite polluted environments that are hazardous to human health. The fecal samples were examined using standard flotation and decantation methods as well as McMaster's quantitative technique. The soil samples in urban and rural areas were examined using a modified flotation method as described by Quinn et al. Statistical analyses were performed by IBM SPSS Statistics Version 23. The overall prevalence of parasites in dogs was 38%, 17.02% and 56.60% from urban and rural areas, respectively. The percentage values of nematodes important for human health ( Toxocara canis , Ancylostomatidae, Trichuris vulpis ) remained at the same level (16%). The infected dogs were dominated by a single parasite species, the main was T. canis (28.95%). In total, 54.30% of the soil samples were contaminated with parasite eggs. The contamination of urban and rural sandpits was 40% and 60%, respectively. The molecular examinations of soil samples using LAMP (loop-mediated isothermal amplification) confirmed the presence of nematode eggs of the species T. canis in all samples previously classified as positive.

Influence of long-term land use (arable and forest) and soil mineralogy on organic carbon stocks as well as composition and stability of soil organic matter

NASA Astrophysics Data System (ADS)

Kaiser, M.; Ellerbrock, R. H.; Wulf, M.; Dultz, S.; Hierath, C.; Sommer, M.

2009-04-01

The function of soils to sequester organic carbon (OC) and their related potential to mitigate the greenhouse effect is strongly affected by land use and soil mineralogy. This study is aimed to clarify long-term impacts of arable and forest land use as well as soil mineralogy on topsoil soil organic carbon (SOC) stocks as well as soil organic matter (SOM) composition and stability. Topsoil samples were taken from deciduous forest and adjacent arable sites (within Germany) that are continuously used for more than 100 years. The soils are different in genesis (Albic and Haplic Luvisol (AL, HL), Colluvic and Haplic Regosol (CR, HR), Haplic and Vertic Cambisol (HC, VC), Haplic Stagnosol (HSt)). First, particulate and water soluble organic matter were separated from the topsoil samples (Ap and Ah horizons). From the remaining solid extraction residues the Na-pyrophosphate soluble organic matter fractions (OM(PY)) were extracted, analysed for its OC content (OC(PY)) and characterized by FTIR spectroscopy and 14C analyses. The SOC stocks calculated for 0-40 cm depth are in general larger for the forest as compared to the adjacent arable soils (except VC). The largest difference between forest and arable topsoils was detected for the HR site (5.9 kg m-2) and seemed to be caused by a two times larger stock of exchangeable Ca of the forest topsoil. For the arable topsoils multiple regression analyses indicate a strong influence of clay, oxalate soluble Al and pyrophosphate soluble Mg on the content of OC(PY) weighted with its C=O content. Such relation is not found for the forest topsoils. Further, a positive relation between Δ14C values of OM(PY) and the following independent variables: (i) specific mineral surface area, (ii) relative C=O group content in OM(PY) and (iii) soil pH is found for the arable topsoils (pH 6.7 - 7.5) suggesting an increase in OM(PY) stability with increasing interactions between OM(PY) and soil mineral surfaces via cation bridging. A similar relation is found for the forest topsoils (pH < 5) if the specific mineral surface area is excluded from the multiple regression. This finding and the higher OC(PY) content of the forest topsoils suggest that in these soils the OM(PY) components are mainly cross-linked by cations and did not interact with mineral surfaces. We assume cross-linking to be less effective for OM stabilization as compared to cation bridging with mineral surfaces since Δ14C data indicate the OM(PY) from the forest topsoils to be less stable than that from arable topsoils.

Mineral Soil Carbon in Managed Hardwood Forests of the Northeastern US

NASA Astrophysics Data System (ADS)

Vario, C.; Friedland, A.; Hornig, C.

2013-12-01

New England is characterized by extensive forest cover and large reservoirs of soil carbon (C). In northern hardwood forests, mineral soil C can account for up to 50% of total ecosystem C. There has been an increasing demand for forests to serve both as a C sink and a renewable energy source, and effective management of the ecosystem C balance relies on accurate modeling of each compartment of the ecosystem. However, the dynamics of soil C storage with respect to forest use are variable and poorly understood, particularly in mineral soils. For example, current regional models assume C pools after forest harvesting do not change, while some studies suggest that belowground mineral soil C pools can be affected by disturbances at the soil surface. We quantified mineral soil C pools in previously clear-cut stands in seven research or protected forests across New York, New Hampshire, Massachusetts, and Vermont. The ages of the sites sampled ranged from recently cleared to those with no disturbance history, with 21 forest stands represented in the study. Within each research forest studied, physical parameters such as soil type, forest type, slope and land-use history (aside from forest harvest) did not vary between the stands of different ages. Soil samples were collected to a depth of 60 cm below the mineral-organic boundary using a gas-powered augur and 9.5-cm diameter drill bit. Samples were collected in 10-cm increments in shallow mineral soil and 15-cm increments from 30-60 cm depth. Carbon, nitrogen (N), pH, texture and soil mineralogy were measured across the regional sites. At Bartlett Experimental Forest (BEF) in New Hampshire, mineral soil biogeochemistry in cut and uncut sites was studied at a finer scale. Measurements included soil temperature to 55 cm depth, carbon compound analyses using Py-GCMS and soil microbial messenger RNA extractions from mineral soil. Finally, we simulated C dynamics after harvesting by building a model in Stella, with a particular interest in the role that priming effects may play if C is transported from organic to mineral soil layers after forest harvest. Laboratory analyses were conducted at Dartmouth College and at the University of New Hampshire. For the regional study, mineral soil C and N concentrations, and in some cases, pools were highest at locations that had never been harvested. Although sites represented different stages of succession after clearing, there were no significant patterns over time since harvest. At BEF, soil temperature at 55 cm depth in a recently cleared stand was on average 1.5° C higher than surrounding forested sites between June and September, and shallower depths had greater temperature discrepancies. Our model, which was parameterized using published field data from Bartlett and Hubbard Brook forests, showed that inputs of labile C to mineral soil after harvest could prime the decomposition of preexisting mineral soil C and account for up to 40% of the observed difference in C pools between harvested and undisturbed sites.

Background concentrations and reference values for heavy metals in soils of Cuba.

PubMed

Alfaro, Mirelys Rodríguez; Montero, Alfredo; Ugarte, Olegario Muñiz; do Nascimento, Clístenes Williams Araújo; de Aguiar Accioly, Adriana Maria; Biondi, Caroline Miranda; da Silva, Ygor Jacques Agra Bezerra

2015-01-01

The potential threat of heavy metals to human health has led to many studies on permissible levels of these elements in soils. The objective of this study was to establish quality reference values (QRVs) for Cd, Pb, Zn, Cu, Ni, Cr, Fe, Mn, As, Hg, V, Ba, Sb, Ag, Co, and Mo in soils of Cuba. Geochemical associations between trace elements and Fe were also studied, aiming to provide an index for establishing background concentrations of metals in soils. Surface samples of 33 soil profiles from areas of native forest or minimal anthropic influence were collected. Samples were digested (USEPA method 3051A), and the metals were determined by ICP-OES. The natural concentrations of metals in soils of Cuba followed the order Fe > Mn > Ni > Cr > Ba > V > Zn > Cu > Pb > Co > As > Sb > Ag > Cd > Mo > Hg. The QRVs found for Cuban soils were as follows (mg kg(-1)): Ag (1), Ba (111), Cd (0.6), Co (25), Cr (153), Cu (83), Fe (54,055), Mn (1947), Ni (170), Pb (50), Sb (6), V (137), Zn (86), Mo (0.1), As (19), and Hg (0.1). The average natural levels of heavy metals are above the global average, especially for Ni and Cr. The chemical fractionation of soil samples presenting anomalous concentrations of metals showed that Cu, Ni, Cr, Sb, and As have low bioavailability. This suggests that the risk of contamination of agricultural products via plant uptake is low. However, the final decision on the establishment of soil QRVs in Cuba depends on political, economic, and social issues and in-depth risk analyses considering all routes of exposure to these elements.

Phosphorus Concentrations in Sequentially Fractionated Soil Samples as Affected by Digestion Methods

PubMed Central

do Nascimento, Carlos A. C.; Pagliari, Paulo H.; Schmitt, Djalma; He, Zhongqi; Waldrip, Heidi

2015-01-01

Sequential fractionation has helped improving our understanding of the lability and bioavailability of P in soil. Nevertheless, there have been no reports on how manipulation of the different fractions prior to analyses affects the total P (TP) concentrations measured. This study investigated the effects of sample digestion, filtration, and acidification on the TP concentrations determined by ICP-OES in 20 soil samples. Total P in extracts were either determined without digestion by ICP-OES, or ICP-OES following block digestion, or autoclave digestion. The effects of sample filtration, and acidification on undigested alkaline extracts prior to ICP-OES were also evaluated. Results showed that, TP concentrations were greatest in the block-digested extracts, though the variability introduced by the block-digestion was the highest. Acidification of NaHCO3 extracts resulted in lower TP concentrations, while acidification of NaOH randomly increased or decreased TP concentrations. The precision observed with ICP-OES of undigested extracts suggests this should be the preferred method for TP determination in sequentially extracted samples. Thus, observations reported in this work would be helpful in appropriate sample handling for P determination, thereby improving the precision of P determination. The results are also useful for literature data comparison and discussion when there are differences in sample treatments. PMID:26647644

Diversity and Contributions to Nitrogen Cycling and Carbon Fixation of Soil Salinity Shaped Microbial Communities in Tarim Basin

PubMed Central

Ren, Min; Zhang, Zhufeng; Wang, Xuelian; Zhou, Zhiwei; Chen, Dong; Zeng, Hui; Zhao, Shumiao; Chen, Lingling; Hu, Yuanliang; Zhang, Changyi; Liang, Yunxiang; She, Qunxin; Zhang, Yi; Peng, Nan

2018-01-01

Arid and semi-arid regions comprise nearly one-fifth of the earth's terrestrial surface. However, the diversities and functions of their soil microbial communities are not well understood, despite microbial ecological importance in driving biogeochemical cycling. Here, we analyzed the geochemistry and microbial communities of the desert soils from Tarim Basin, northwestern China. Our geochemical data indicated half of these soils are saline. Metagenomic analysis showed that bacterial phylotypes (89.72% on average) dominated the community, with relatively small proportions of Archaea (7.36%) and Eukaryota (2.21%). Proteobacteria, Firmicutes, Actinobacteria, and Euryarchaeota were most abundant based on metagenomic data, whereas genes attributed to Proteobacteria, Actinobacteria, Euryarchaeota, and Thaumarchaeota most actively transcribed. The most abundant phylotypes (Halobacterium, Halomonas, Burkholderia, Lactococcus, Clavibacter, Cellulomonas, Actinomycetospora, Beutenbergia, Pseudomonas, and Marinobacter) in each soil sample, based on metagenomic data, contributed marginally to the population of all microbial communities, whereas the putative halophiles, which contributed the most abundant transcripts, were in the majority of the active microbial population and is consistent with the soil salinity. Sample correlation analyses according to the detected and active genotypes showed significant differences, indicating high diversity of microbial communities among the Tarim soil samples. Regarding ecological functions based on the metatranscriptomic data, transcription of genes involved in various steps of nitrogen cycling, as well as carbon fixation, were observed in the tested soil samples. Metatranscriptomic data also indicated that Thaumarchaeota are crucial for ammonia oxidation and Proteobacteria play the most important role in other steps of nitrogen cycle. The reductive TCA pathway and dicarboxylate-hydroxybutyrate cycle attributed to Proteobacteria and Crenarchaeota, respectively, were highly represented in carbon fixation. Our study reveals that the microbial communities could provide carbon and nitrogen nutrients for higher plants in the sandy saline soils of Tarim Basin. PMID:29593680

Effects of elevated CO2 concentrations on denitrifying and nitrifying popualtions at terrestrial CO2 leakeage analogous sites

NASA Astrophysics Data System (ADS)

Christine, Dictor Marie; Catherine, Joulian; Valerie, Laperche; Stephanie, Coulon; Dominique, Breeze

2010-05-01

CO2 capture and geological storage (CCS) is recognized to be an important option for carbon abatement in Europe. One of the risks of CCS is the leakage from storage site. A laboratory was conducted on soil samples sampled near-surface from a CO2 leakage analogous site (Latera, Italy) in order to evaluate the impact of an elevated soil CO2 concentration on terrestrial bacterial ecosystems form near surface terrestrial environments and to determine a potential bacterial indicator of CO2 leakage from storage site. Surveys were conducted along a 50m long transect across the vent centre, providing a spectrum of CO2 flux rates, soil gas concentrations and compositions (Beaubien et al., 2007). A bacterial diversity studies, performed by CE-SSCP technique, on a soil profile with increasing CO2 soil concentrations (from 0.3% to 100%) showed that a change on bacterial diversity was noted when CO2 concentration was above 50 % of CO2. From this result, 3 soil samples were taken at 70 cm depth in 3 distinct zones (background soil CO2 content, soil CO2 content of 20% and soil CO2 content of 50%). Then theses soil samples were incubated under closed jars flushed with different air atmospheres (20, 50 and 90 % of CO2) during 18 months. At initial, 3, 6, 12 and 18 months, some soil samples were collected in order to estimate the denitrifying, nitrifying activities as a function of CO2 concentration content and times. Theses enzymatic activities were chosen because one occurs under anaerobic conditions (denitrification) and the other occurs under aerobic conditions (nitrification). Both of them were involved in the nitrogen cycle and are major actors of soil function and groundwater quality preservation. Metabolic diversity using BIOLOG Ecoplates was determined on every soil samples. Physico-chemical parameters (e.g. pH, bulk chemistry, mineralogy) were analyzed to have some information about the evolution of the soil during the incubation with increasing soil CO2 concentrations. Statistical analyses were performed to correlate microbiological measures and physico-chemical parameters. For the soil sampled in a zone with background CO2 content, incubation under an atmosphere with 20% of CO2, induce a sharp decrease of denitrifying activity after 6 months of incubation and only after 3 months with an atmosphere of 50% of CO2. On the contrary, concerning the soil sampled in a zone with 25.5% of CO2, incubation with an atmosphere of 50% has no effect on denitrifying activity and moreover this activity was stimulated with an atmosphere of 90% of CO2.Last, with the soil sampled in an area with 65.8% of CO2, denitrifying activity was negatively impacted from the 3th month of incubation with 90% CO2.and the activity was 2 fold lower after 12th of incubation. Concerning the nitrifying activity, soil sampled in an area with background CO2 content, this one remains little affected by increasing CO2 incubation. At initial times, soil sampled in the areas with 25.5 and 65.8 % of CO2 showed low level of nitrifying activities and further CO2 incubations have no effect on these activities. At the end, denitrifying activities seems to be more sensitive to CO2 concentrations evolution in the soil. More studies need to be done as incubation with lower CO2 content (< 10%) in order to determine the threshold of CO2 that can affect the near-surface bacterial activities and identify a possible candidate of CO2 leakage from deep reservoirs.

Investigation of Soil Erosion and Phosphorus Transport within an Agricultural Watershed

NASA Astrophysics Data System (ADS)

Klik, A.; Jester, W.; Muhar, A.; Peinsitt, A.; Rampazzo, N.; Mentler, A.; Staudinger, B.; Eder, M.

2003-04-01

In a 40 ha agricultural used watershed in Austria, surface runoff, soil erosion and nutrient losses are measured spatially distributed with 12 small erosion plots. Crops during growing season 2002 are canola, corn, sunflower, winter wheat, winter barley, rye, sugar beets, and pasture. Canopy height and canopy cover are observed in 14-day intervals. Four times per year soil water content, shear stress and random roughness of the surface are measured in a 25 x 25 m grid (140 points). The same raster is sampled for soil texture analyses and content of different phosphorus fractions in the 0-10 cm soil depth. Spatially distributed data are used for geostatistical analysis. Along three transects hydrologic conditions of the hillslope position (top, middle, foot) are investigated by measuring soil water content and soil matrix potential. After erosive events erosion features (rills, deposition, ...) are mapped using GPS. All measured data will be used as input parameters for the Limburg Soil Erosion Model (LISEM).

Spatial analysis of soil erosion and sediment fluxes: a paired watershed study of two Rappahannock River tributaries, Stafford County, Virginia.

PubMed

Ricker, Matthew C; Odhiambo, Ben K; Church, Joseph M

2008-05-01

Soil erosion is a serious problem in areas with expanding construction, agricultural production, and improper storm water management. It is important to understand the major processes affecting sediment delivery to surficial water bodies in order to tailor effective mitigation and outreach activities. This study analyzes how naturally occurring and anthropogenic influences, such as urbanization and soil disturbance on steep slopes, are reflected in the amount of soil erosion and sediment delivery within sub-watershed-sized areas. In this study, two sub-watersheds of the Rappahannock River, Horsepen Run and Little Falls Run, were analyzed using the Revised Universal Soil Loss Equation (RUSLE) and a sediment delivery ratio (SDR) to estimate annual sediment flux rates. The RUSLE/SDR analyses for Horsepen Run and Little Falls Run predicted 298 Mg/y and 234 Mg/y, respectively, but nearly identical per-unit-area sediment flux rates of 0.15 Mg/ha/y and 0.18 Mg/ha/y. Suspended sediment sampling indicated greater amounts of sediment in Little Falls Run, which is most likely due to anthropogenic influences. Field analyses also suggest that all-terrain vehicle crossings represent the majority of sediment flux derived from forested areas of Horsepen Run. The combined RUSLE/SDR and field sampling data indicate that small-scale anthropogenic disturbances (ATV trails and construction sites) play a major role in overall sediment flux rates for both basins and that these sites must be properly accounted for when evaluating sediment flux rates at a sub-watershed scale.

Lunar Science Conference, 5th, Houston, Tex., March 18-22, 1974, Proceedings. Volume 1 - Mineralogy and petrology. Volume 2 Chemical and isotope analyses. Organic chemistry. Volume 3 - Physical properties

NASA Technical Reports Server (NTRS)

Gose, W. A.

1974-01-01

Numerous studies on the properties of the moon based on Apollo findings and samples are presented. Topics treated include ages of the lunar nearside light plains and maria, orange material in the Sulpicius Gallus formation at the southwestern edge of Mare Serenitatis, impact-induced fractionation in the lunar highlands, igneous rocks from Apollo 16 rake samples, experimental liquid line of descent and liquid immiscibility for basalt 70017, ion microprobe mass analysis of plagioclase from 'non-mare' lunar samples, grain size and the evolution of lunar soils, chemical composition of rocks and soils at Taurus-Littrow, the geochemical evolution of the moon, U-Th-Pb systematics of some Apollo 17 lunar samples and implications for a lunar basin excavation chronology, volatile-element systematics and green glass in Apollo 15 lunar soils, solar wind nitrogen and indigenous nitrogen in Apollo 17 lunar samples, lunar trapped xenon, solar flare and lunar surface process characterization at the Apollo 17 site, and the permanent and induced magnetic dipole moment of the moon. Individual items are announced in this issue.

Origin and modal petrography of Luna 24 soils

NASA Technical Reports Server (NTRS)

Basu, A.; Mckay, D. S.; Fruland, R. M.

1978-01-01

Petrographic modal analyses of polished grain mounts of fractions in the 20 to 250 micron size range from Luna 24 soil samples are presented and used to infer the nature and relative contributions of source rocks. It is found that more than 90% of the identifiable rock fragments are mare basalts, with about 11% of the soil consisting of the crystalline form. Soil breccias, which make up nearly 10% of the soil, are found to be immature. Electron probe analysis of glass particles reveals principle clusters conforming to anorthosite, anorthositic gabbro and mare basalts. More than half of the soil is composed of monomineralic particles, with pyroxene as the most abundant mineral. It is concluded that 85% of the regolith is derived from local mare basalts and gabbros and about 10% is derived from early cumulates of local mare basalt magma. Highland sources are considered to contribute not more than 3% of the regolith.

An integrated view of the chemistry and mineralogy of martian soils

USGS Publications Warehouse

Yen, A. S.; Gellert, Ralf; Schroder, C.; Morris, R.V.; Bell, J.F.; Knudson, A.T.; Clark, B. C.; Ming, D. W.; Crisp, J.A.; Arvidson, R. E.; Blaney, D.; Brückner, J.; Christensen, P.R.; DesMarais, D.J.; De Souza, P.A.; Economou, T.E.; Ghosh, A.; Hahn, B.C.; Herkenhoff, K. E.; Haskin, L.A.; Hurowitz, J.A.; Joliff, B.L.; Johnson, J. R.; Klingelhofer, G.; Madsen, M.B.; McLennan, S.M.; McSween, H.Y.; Richter, L.; Rieder, R.; Rodionov, D.; Soderblom, L.; Squyres, S. W.; Tosca, N.J.; Wang, A.; Wyatt, M.; Zipfel, J.

2005-01-01

The mineralogical and elemental compositions of the martian soil are indicators of chemical and physical weathering processes. Using data from the Mars Exploration Rovers, we show that bright dust deposits on opposite sides of the planet are part of a global unit and not dominated by the composition of local rocks. Dark soil deposits at both sites have similar basaltic mineralogies, and could reflect either a global component or the general similarity in the compositions of the rocks from which they were derived. Increased levels of bromine are consistent with mobilization of soluble salts by thin films of liquid water, but the presence of olivine in analysed soil samples indicates that the extent of aqueous alteration of soils has been limited. Nickel abundances are enhanced at the immediate surface and indicate that the upper few millimetres of soil could contain up to one per cent meteoritic material.

Actinide migration in Johnston Atoll soil

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wolf, S. F.; Bates, J. K.; Buck, E. C.

1997-02-01

Characterization of the actinide content of a sample of contaminated coral soil from Johnston Atoll, the site of three non-nuclear destructs of nuclear warhead-carrying THOR missiles in 1962, revealed that >99% of the total actinide content is associated with discrete bomb fragments. After removal of these fragments, there was an inverse correlation between actinide content and soil particle size in particles from 43 to 0.4 {micro}m diameter. Detailed analyses of this remaining soil revealed no discrete actinide phase in these soil particles, despite measurable actinide content. Observations indicate that exposure to the environment has caused the conversion of relatively insolublemore » actinide oxides to the more soluble actinyl oxides and actinyl carbonate coordinated complexes. This process has led to dissolution of actinides from discrete particles and migration to the surrounding soil surfaces, resulting in a dispersion greater than would be expected by physical transport of discrete particles alone.« less

Leaching behaviour of coal-ash: a case study.

PubMed

Hajarnavis, M R; Bhide, A D

2003-10-01

Leaching of trace elements from fly ash dumps to subsoil layer due to the rain water results in contamination of ground water. The ground water pollution due to fly ash deposition on land so occurring was assessed by simulating the disposal site conditions using two lysimeter with two different soils. Leachate was collected and analysed daily to help understand the phenomenon of leaching of fly-ash constituents in the environment. The trace metals and physico-chemical parameters of fly ash and soil used were measured before and after the experiment. Results of analysis of soil and fly ash samples were then compared with the results of lysimeter-I and lysimeter-II. The study reveals that metals respond differently at dumping site while reacting with soil and water.

Evaluation of methods of determining humic acids in nucleic acid samples for molecular biological analysis.

PubMed

Wang, Yong; Fujii, Takeshi

2011-01-01

It is important in molecular biological analyses to evaluate contamination of co-extracted humic acids in DNA/RNA extracted from soil. We compared the sensitivity of various methods for measurement of humic acids, and influences of DNA/RNA and proteins on the measurement. Considering the results, we give suggestions as to choice of methods for measurement of humic acids in molecular biological analyses.

Installation-restoration program. Phase 2. Confirmation/quantification. Stage 1 for Shaw Air Force Base, South Carolina. Final report, January 1984-October 1986

DOE Office of Scientific and Technical Information (OSTI.GOV)

Alexander, W.J.; Liddle, S.K.

1986-09-01

The primary objectives of this project were to collect and analyze groundwater, surface water, and sediment samples and to perform an initial characterization of the hydrogeochemical regime at potential contamination sites on Shaw Air Force Base near Sumter, South Carolina. This study constituted Phase II of the U.S. Air Force Installation Restoration Program (IRP). Five potential sources of groundwater pollution were studied. The evaluation primarily included the drilling of soil test borings, the installation, development, and sampling of groundwater monitoring wells, and the analyses of soil, surface water, and groundwater samples. Also used in the study were field measurements ofmore » water quality, water-level measurements site observations, published hydrogeologic data and Shaw AFB documents.« less

Determination of trace heavy metals in soil and sediments by atomic spectrometry following preconcentration with Schiff bases on Amberlite XAD-4.

PubMed

Kara, Derya; Fisher, Andrew; Hill, Steve J

2009-06-15

A matrix separation and analyte preconcentration system using Amberlite XAD copolymer resins functionalized by Schiff base reactions coupled with atomic spectrometry has been developed. Three different functionalized Amberlite XAD resins were synthesized using 4-phenylthiosemicarbazide, 2,3-dihydroxybenzaldehyde and 2-thiophenecarboxaldehyde as reagents. These resins could be used to preconcentrate transition and other trace heavy metal analytes from nitric acid digests of soil and sediment samples. Analyte retention was shown to work well at pH 6.0. After treatment of the digests with sodium fluoride and buffering to pH 6, samples that contain extremely large concentrations of iron were analysed for trace analytes without the excess iron overloading the capacity of the resin. The analytes Cd, Co, Cu, Ni and Pb were preconcentrated from acid extracts of certified soil/sediment samples and then eluted with 0.1M HNO(3) directly to the detection system. Flame atomic absorption spectrometry was used as a means of detection during the studies. The efficiency of the chelating resin and the accuracy of the proposed method were evaluated by the analysis of soil (SO-2) and sediment (LGC 6157 and MESS-3) certified reference materials.

Natural radioactivity levels of geothermal waters and their influence on soil and agricultural activities.

PubMed

Murat Saç, Müslim; Aydemir, Sercan; Içhedef, Mutlu; Kumru, Mehmet N; Bolca, Mustafa; Ozen, Fulsen

2014-01-01

All over the world geothermal sources are used for different purposes. The contents of these waters are important to understand positive/negative effects on human life. In this study, natural radioactivity concentrations of geothermal waters were investigated to evaluate the effect on soils and agricultural activities. Geothermal water samples were collected from the Seferihisar Geothermal Region, and the radon and radium concentrations of these waters were analysed using a collector chamber method. Also soil samples, which are irrigated with geothermal waters, were collected from the surroundings of geothermal areas, and natural radioactivity concentrations of collected samples (U, Th and K) were determined using an NaI(Tl) detector system. The activity concentrations of radon and radium were found to be 0.6-6.0 and 0.1-1.0 Bq l(-1), respectively. Generally, the obtained results are not higher compared with the geothermal waters of the world. The activity concentrations in soils were found to be in the range of 3.3-120.3 Bq kg(-1) for (226)Ra (eU), 0.3-108.5 Bq kg(-1) for (232)Th (eTh), 116.0-850.0 Bq kg(-1) for (40)K (% K).

Dust emission and soil loss due to anthropogenic activities by wind erosion simulations

NASA Astrophysics Data System (ADS)

Katra, Itzhak; Swet, Nitzan; Tanner, Smadar

2017-04-01

Wind erosion is major process of soil loss and air pollution by dust emission of clays, nutrients, and microorganisms. Many soils throughout the world are currently or potentially associated with dust emissions, especially in dryland zones. The research focuses on wind erosion in semi-arid soils (Northern Negev, Israel) that are subjected to increased human activities of urban development and agriculture. A boundary-layer wind tunnel has been used to study dust emission and soil loss by simulation and quantification of high-resolution wind processes. Field experiments were conducted in various surface types of dry loess soils. The experimental plots represent soils with long-term and short term influences of land uses such as agriculture (conventional and organic practices), grazing, and natural preserves. The wind tunnel was operated under various wind velocities that are above the threshold velocity of aeolian erosion. Total soil sediment and particulate matter (PM) fluxes were calculated. Topsoil samples from the experimental plots were analysed in the laboratory for physical and chemical characteristics including aggregation, organic matter, and high-resolution particle size distribution. The results showed variations in dust emission in response to surface types and winds to provide quantitative estimates of soil loss over time. Substantial loss of particulate matter that is < 10 micrometer in diameter, including clays and nutrients, was recorded in most experimental conditions. Integrative analyses of the topsoil properties and dust experiment highlight the significant implications for soil nutrient resources and management strategies as well as for PM loading to the atmosphere and air pollution.

Illumina Amplicon Sequencing of 16S rRNA Tag Reveals Bacterial Community Development in the Rhizosphere of Apple Nurseries at a Replant Disease Site and a New Planting Site

PubMed Central

Sun, Jian; Zhang, Qiang; Zhou, Jia; Wei, Qinping

2014-01-01

We used a next-generation, Illumina-based sequencing approach to characterize the bacterial community development of apple rhizosphere soil in a replant site (RePlant) and a new planting site (NewPlant) in Beijing. Dwarfing apple nurseries of ‘Fuji’/SH6/Pingyitiancha trees were planted in the spring of 2013. Before planting, soil from the apple rhizosphere of the replant site (ReSoil) and from the new planting site (NewSoil) was sampled for analysis on the Illumina MiSeq platform. In late September, the rhizosphere soil from both sites was resampled (RePlant and NewPlant). More than 16,000 valid reads were obtained for each replicate, and the community was composed of five dominant groups (Proteobacteria, Acidobacteria, Bacteroidetes, Gemmatimonadetes and Actinobacteria). The bacterial diversity decreased after apple planting. Principal component analyses revealed that the rhizosphere samples were significantly different among treatments. Apple nursery planting showed a large impact on the soil bacterial community, and the community development was significantly different between the replanted and newly planted soils. Verrucomicrobia were less abundant in RePlant soil, while Pseudomonas and Lysobacter were increased in RePlant compared with ReSoil and NewPlant. Both RePlant and ReSoil showed relatively higher invertase and cellulase activities than NewPlant and NewSoil, but only NewPlant soil showed higher urease activity, and this soil also had the higher plant growth. Our experimental results suggest that planting apple nurseries has a significant impact on soil bacterial community development at both replant and new planting sites, and planting on new site resulted in significantly higher soil urease activity and a different bacterial community composition. PMID:25360786

Changes in quantity and spectroscopic properties of water-extractable organic matter during soil aquifer treatment.

PubMed

Xue, S; Zhao, Q L; Wei, L L; Ma, X P; Tie, M

2013-01-01

The aim of this study was to identify qualitative and quantitative changes in the character of water-extractable organic matter (WEOM) in soils as a consequence of soil aquifer treatment (SAT). Soil samples were obtained from a soil-column system with a 2-year operation, and divided into seven layers from top to bottom: CS1 (0-12.5 cm), CS2 (12.5-25 cm), CS3 (25-50 cm), CS4 (50-75 cm), CS5 (75-100 cm), CS6 (100-125 cm) and CS7 (125-150 cm). A sample of the original soil used to pack the columns was also analysed to determine the effects of SAT. Following 2 years of SAT operation, both soil organic carbon and water-extractable organic carbon were shown to accumulate in the top soil layer (0-12.5 cm), and to decrease in soil layers deeper than 12.5 cm. The WEOM in the top soil layer was characterized by low aromaticity index (AI), low emission humification index (HIX) and low fluorescence efficiency index (F(eff)). On the other hand, the WEOM in soil layers deeper than 12.5 cm had increased values of HIX and F(eff), as well as decreased AI values relative to the original soil before SAT. In all soil layers, the percentage of hydrophobic and transphilic fractions decreased, while that of the hydrophilic fraction increased, as a result of SAT. The production of the amide-2 functional groups was observed in the top soil layer. SAT operation also led to the enrichment of hydrocarbon and amide-1 functional groups, as well as the depletion of oxygen-containing functional groups in soil layers deeper than 12.5 cm.

Sensing technologies to measure metabolic activities in soil and assess its health conditions

NASA Astrophysics Data System (ADS)

De Cesare, Fabrizio; Macagnano, Antonella

2013-04-01

Soil is a complex ecosystem comprised of several and mutually interacting components, both abiotic (organo-mineral associations) and biotic (microbial and pedofaunal populations and plants), where a single parameter depends on other factors and affects the same and other factors, so that a network of influences among organisms coexists with the reciprocal actions between organisms and their environment. Therefore, it is difficult to undoubtedly determine what is the cause and what the effect within relationships between factors and processes. Soil is commonly studied through the evaluation and measurement of single parameters (e.g. the content of soil organic matter (SOM), microbial biomass, enzyme activities, pH, etc.), events (e.g. soil erosion, compaction, etc.) and processes (e.g. soil respiration, carbon fluxes, nitrification/denitrification, etc.), often carried out in laboratory conditions in order to limit the number of factors acting within the ecosystem under study, but missing the information about the global soil environment that way. In the last decade, several scientists have proposed and suggested the need for a holistic approach to soil ecosystems in different contexts. Recently, we have applied a sensing system developed in the last decades and capable of analysing complex mixtures of gases and volatiles (odours or aromas) in atmospheres, namely called electronic nose (EN). Typically, ENs are devices consisting of an array of differentially and partially specific, despite selective, sensors upon diverse coatings of sensitive films, i.e. interacting with single analytes of the same chemical class, despite not highly specific for a single substance, only, but showing also lower extent of cross-selectivity towards compounds of other chemical classes. ENs can be used in the classifications of odours by processing the collected responses of all sensors in the array through pattern recognition analyses, in order to obtain a chemical fingerprint (olfactory fingerprint) typical of the analysed air sample. Due to these features, we decided to apply such a sensing technology to the analyses of soil atmospheres, because several processes in soil, both abiotic and biotic, result in gas and/or volatile production and the dynamics of such releases may also be affected by several additional environmental factors, such as soil moisture, temperature, gas exchange rates with outer atmosphere, adsorption/desorption processes, etc. Then, the analysis of soil atmosphere may provide information about global soil conditions (e.g. soil quality and health), according to a holistic approach, where several factors are contemporarily taken into account. At the same time, the use of such a technology, if adequately trained on purpose, can supply information about a single or a pool of processes sharing similar features, which occur in soil over a certain period of time and mostly affecting soil atmosphere. According to these premises and hypotheses, we demonstrated that EN is an useful technology to measure soil microbial activity, through its correlation to specific metabolic activities occurring in soil (i.e. global and specific respiration and some enzyme activities), but also soil microbial biomass. On the basis of such evidences, we also were able to use this technology to assess the quality and health conditions of soil ecosystems in terms of metabolic indices previously identified, according to some metabolic parameters and biomass quantification of microbial populations. In other studies, we also applied EN technology, despite using a different set of sensors in the array, to analyse the atmosphere of soil ecosystems in order to assess their environmental conditions after contamination with polycyclic aromatic hydrocarbons (PAHs) (i.e. semivolatile - SVOCs - organic pollutants). In this case, EN technology resulted capable of distinguishing between contaminated and uncontaminated soils, according to the differences in a list of substances, occurring in the atmospheres of differently treated soils, which were identified through SPME-GC/MS analyses and then suggested to be responsible for the different classification. Analysing the EN responses, it was also possible to follow the degradation process of pollutants by resident microbial populations over time, on the basis of the contemporary decrease of contaminant and the increased release of CO2. Then, we suggest that EN technology may be usefully employed in the analyses of soil ecosystems in order to both supply information about global soil environment, according to the holistic approach, and about specific processes occurring therein. Furthermore, since EN technology resulted to be effective and successful in detecting processes in soil, in both natural and perturbed conditions, involving microbial populations, which are commonly considered as the most sensitive and responsive to soil environmental modifications, we suggest it might be reasonably employed in analyses concerning the assessment of soil quality and health. Consequently, such a technology may also be used to study several processes involving soil ecosystems, such as soil management practices, soil restoration, soil contamination and remediation, soil fertility, etc.

Evaluation of soil toxicity at Joliet Army Ammunition Plant

DOE Office of Scientific and Technical Information (OSTI.GOV)

Simini, M.; Amos, J.C.; Wentsel, R.S.

1995-04-01

Environmental toxicity testing and chemical analyses of soil were performed as part of an ecological risk assessment at the Joliet Army Ammunition Plant (JAAP), Joliet, Illinois. Soils were collected from an area where munitions were loaded, assembled, and packed (area L7, group 1), and from an area where waste explosives were burned on unprotected soil (area L2). Control samples were collected from an adjacent field. Soil toxicity was determined using early seedling growth and vigor tests, earthworm survival and growth tests, and Microtox{reg_sign} assays. Relative toxicity of soils was determined within each area based on statistical significant (p = 0.05)more » of plant and earthworm growth and survival, and the effective concentration at which luminescence of the bacterium Photobacterium phosphoreum was reduced by 50% (EC50) in the Microtox assay. Samples were designated as having high, moderate, or no significant toxicity. Soil that had significant toxicity according to at least one test, and representative samples showing no toxicity, were analyzed for munitions via HPLC. Chemical residues found in soils were 2,4,6-trinitrotoluene (TNT); 1,3,5-trinitrobenzene (TNB); 2,4-dinitrotoluene (2,4-DNT); 2,6-dinitrotoluene; 2-amino-4,6-DNT; 4-amino-2,6-DNT; 1,3,5-trinitro-1,3,5-triazine (RDX); and octahydro-1,3,5,7-tetranitro-1,3,5,7-tetrazocine (HMX). All soils with no significant toxicity were void of these chemicals. However, some soils void of munitions still showed toxicity that may have been caused by elevated levels of heavy metals. Linear regressions of toxicity test results vs. chemical concentrations showed that TNT and TNB accounted for most off the soil toxicity. Lowest-observable-effect concentrations (LOEC) of TNT were determined from these data. This study presents a simple, relatively inexpensive methodology for assessing toxicity of soils containing TNT, RDX, and other contaminants related to munitions production.« less

Soil functional diversity analysis of a bauxite-mined restoration chronosequence.

PubMed

Lewis, Dawn E; White, John R; Wafula, Denis; Athar, Rana; Dickerson, Tamar; Williams, Henry N; Chauhan, Ashvini

2010-05-01

Soil microorganisms are sensitive to environmental perturbations such that changes in microbial community structure and function can provide early signs of anthropogenic disturbances and even predict restoration success. We evaluated the bacterial functional diversity of un-mined and three chronosequence sites at various stages of rehabilitation (0, 10, and 20 years old) located in the Mocho Mountains of Jamaica. Samples were collected during the dry and wet seasons and analyzed for metal concentrations, microbial biomass carbon, bacterial numbers, and functional responses of soil microbiota using community-level physiological profile (CLPP) assays. Regardless of the season, un-mined soils consisted of higher microbial biomass and numbers than any of the rehabilitated sites. Additionally, the number and rate of substrates utilized and substrate evenness (the distribution of color development between the substrates) were significantly greater in the un-mined soils with carbohydrates being preferentially utilized than amino acids, polymers, carboxylic acids, and esters. To some extent, functional responses varied with the seasons but the least physiological activity was shown by the site rehabilitated in 1987 indicating long-term perturbation to this ecosystem. Small subunit ribosomal DNA (SSUrDNA)-denaturing gradient-gel electrophoresis analyses on the microbiota collected from the most preferred CLPP substrates followed by taxonomic analyses showed Proteobacteria, specifically the gamma-proteobacteria, as the most functionally active phyla, indicating a propensity of this phyla to out-compete other groups under the prevailing conditions. Additionally, multivariate statistical analyses, Shannon's diversity, and evenness indices, principal component analysis, biplot and un-weighted-pair-group method with arithmetic averages dendrograms further confirmed that un-mined sites were distinctly different from the rehabilitated soils.

The Effect of Acid Neutralization on Analytical Results Produced from SW846 Method 8330 after the Alkaline Hydrolysis of Explosives in Soil

DTIC Science & Technology

2012-09-01

basic form of phosphoric acid or sodium phosphate NO2- Nitrite OH- Hydroxide ion ERDC/EL TR-12-14 1 1 Introduction Alkaline hydrolysis has...into amber sample vials and refrigerated until analyzed. TNT analyses were conducted by high performance liquid chromatography (HPLC) with a C-18...The explosives concentrations of the different soils were quantified using a DIONEX HPLC system equipped with a C-18 reverse phase column and a

The case for planetary sample return missions. 2. History of Mars.

PubMed

Gooding, J L; Carr, M H; McKay, C P

1989-08-01

Principal science goals for exploration of Mars are to establish the chemical, isotopic, and physical state of Martian material, the nature of major surface-forming processes and their time scales, and the past and present biological potential of the planet. Many of those goals can only be met by detailed analyses of atmospheric gases and carefully selected samples of fresh rocks, weathered rocks, soils, sediments, and ices. The high-fidelity mineral separations, complex chemical treatments, and ultrasensitive instrument systems required for key measurements, as well as the need to adapt analytical strategies to unanticipated results, point to Earth-based laboratory analyses on returned Martian samples as the best means for meeting the stated objectives.

Water uptake depth analyses using stable water isotopes in rice-based cropping systems in Southeastern Asia

NASA Astrophysics Data System (ADS)

Mahindawansha, Amani; Kraft, Philipp; Orlowski, Natalie; Racela, Healthcliff S. U.; Breuer, Lutz

2017-04-01

Rice is one of the most water-consuming crop in the world. Understanding water source utilization of rice-based cropping systems will help to improve water use efficiency (WUE) in paddy management. The objectives of our study were to (1) determine the contributions of various water sources to plant growth in diversified rice-based production systems (wet rice, aerobic rice) (2) investigate water uptake depths at different maturity periods during wet and dry conditions, and (3) calculate WUE of the cropping systems. Our field experiment is based on changes of stable water isotope concentrations in the soil-plant-atmosphere continuum due to transpiration and evaporation. Soil samples were collected together with root sampling from nine different depths under vegetative, reproductive, and matured periods of plant growth together with stem samples. Soil and plant samples were extracted by cryogenic vacuum extraction. Groundwater, surface water, rain, and irrigation water were sampled weekly. All water samples were analyzed for hydrogen and oxygen isotope ratios (δ2H and δ18O) via a laser spectroscope (Los Gatos DLT100). The direct inference approach, which is based on comparing isotopic compositions between plant stem water and soil water, were used to determine water sources taken up by plant. Multiple-source mass balance assessment can provide the estimated range of potential contributions of water from each soil depth to root water uptake of a crop. These estimations were used to determine the proportion of water from upper soil horizons and deep horizons for rice in different maturity periods during wet and dry seasons. Shallow soil water has the higher evaporation than from deeper soil water where the highest evaporation effect is at 5 cm depth (drying front). Water uptake is mostly taking place from surface water in the vegetative and between 5-10 cm in the reproductive period, since roots have grown widely and deeper in the reproductive stage. This will be helpful to understand the WUE and identify the most efficient water management system and the influence of groundwater and surface water during both seasons in rice-based cropping ecosystems by using means of stable water isotope.

Geoaccumulation assessment of heavy metal pollution in Ikwo soils, eastern Nigeria.

PubMed

Tyopine, Andrew A; Jayeoye, Titilope J; Okoye, Chukwuma O B

2018-01-04

An imbalance in the environment's composition leads to significant effect on human activities such as farming. Of importance are heavy metals which are introduced anthropogenically or naturally. This calls for environmental monitoring and subsequent remediation if needed. An environmental monitoring exercise was conducted on Ikwo soils of Ebonyi State, eastern Nigeria with the aim of determining concentration levels for possible remediation. A total of 18 soil composite samples taken at 0-50 cm below soil surface from fallowed and cultivated soils not fertilized were subjected to heavy metal analyses and fertility indices like: organic matter (OM), cation exchange capacity (CEC), % total nitrogen (%TN), organic carbon (OC), and salinity. A correlation at 95% confidence level between geo-accumulations (I geo ) of the various heavy metals with salinity, OM, and CEC of the sampled soils reveals that I geo could be a contributing factor to the fertility status of the soils. With the aid of inductively coupled plasma atomic emission spectrophotometer (ICP-AES), the distribution pattern was determined as Mn> Fe> Zn>Cu> Mo> Cd> V>Hg>Ti> Ni>Bi> Pb> Co>Ag>Au> Cr>Pd>Pt. The I geo of the heavy metals in the study area varied from heavily to extremely contaminated levels. A remediation exercise was recommended on Ikwo soils due to their high salinity level and low CEC.

Differences in soil micro-eukaryotic communities over soil pH gradients are strongly driven by parasites and saprotrophs.

PubMed

Dupont, A Ö C; Griffiths, R I; Bell, T; Bass, D

2016-06-01

A recent large-scale assessment of bacterial communities across a range of UK soil types showed that bacterial community structure was strongly determined by soil pH. We analysed a data set of eukaryotic 454 sequencing 18S rDNA from the surveyed samples and showed significant differences in eukaryotic assemblages according to pH class, mostly between low pH and higher pH soils. Soil eukaryote communities (per sample) differed most at the taxonomic rank approximating to order level. Taxonomies assigned with the Protist Ribosomal Reference and the Silva 119 databases were taxonomically inconsistent, mostly due to differing 18S annotations, although general structure and composition according to pH were coherent. A relatively small number of lineages, mostly putative parasitic protists and fungi, drive most differences between pH classes, with weaker contributions from bacterivores and autotrophs. Overall, soil parasites included a large diversity of alveolates, in particular apicomplexans. Phylogenetic analysis of alveolate lineages demonstrates a large diversity of unknown gregarines, novel perkinsids, coccidians, colpodellids and uncharacterized alveolates. Other novel and/or divergent lineages were revealed across the eukaryote tree of life. Our study provides an in-depth taxonomic evaluation of micro-eukaryotic diversity, and reveals novel lineages and insights into their relationships with environmental variables across soil gradients. © 2016 Society for Applied Microbiology and John Wiley & Sons Ltd.

Revisiting chlorophyll extraction methods in biological soil crusts - methodology for determination of chlorophyll a and chlorophyll a + b as compared to previous methods

NASA Astrophysics Data System (ADS)

Caesar, Jennifer; Tamm, Alexandra; Ruckteschler, Nina; Lena Leifke, Anna; Weber, Bettina

2018-03-01

Chlorophyll concentrations of biological soil crust (biocrust) samples are commonly determined to quantify the relevance of photosynthetically active organisms within these surface soil communities. Whereas chlorophyll extraction methods for freshwater algae and leaf tissues of vascular plants are well established, there is still some uncertainty regarding the optimal extraction method for biocrusts, where organism composition is highly variable and samples comprise major amounts of soil. In this study we analyzed the efficiency of two different chlorophyll extraction solvents, the effect of grinding the soil samples prior to the extraction procedure, and the impact of shaking as an intermediate step during extraction. The analyses were conducted on four different types of biocrusts. Our results show that for all biocrust types chlorophyll contents obtained with ethanol were significantly lower than those obtained using dimethyl sulfoxide (DMSO) as a solvent. Grinding of biocrust samples prior to analysis caused a highly significant decrease in chlorophyll content for green algal lichen- and cyanolichen-dominated biocrusts, and a tendency towards lower values for moss- and algae-dominated biocrusts. Shaking of the samples after each extraction step had a significant positive effect on the chlorophyll content of green algal lichen- and cyanolichen-dominated biocrusts. Based on our results we confirm a DMSO-based chlorophyll extraction method without grinding pretreatment and suggest the addition of an intermediate shaking step for complete chlorophyll extraction (see Supplement S6 for detailed manual). Determination of a universal chlorophyll extraction method for biocrusts is essential for the inter-comparability of publications conducted across all continents.

Element concentrations in soils and other surficial materials of the conterminous United States

USGS Publications Warehouse

Shacklette, Hansford T.; Boerngen, Josephine G.

1984-01-01

Samples of soils or other regoliths, taken at a depth of approximately 20 cm form locations about 80 km apart, throughout the conterminous United States, were analyzed for their content of elements. In this manner, 1,318 sampling sites were chosen, and the results of the sample analyses for 50 elements were plotted on maps. The arithmetic and geometric mean, the geometric deviation, and a histogram showing frequencies of analytical values are given for 47 elements. The lower concentrations of some elements (notable, aluminum, barium, calcium, magnesium, potassium, sodium, and strontium) in most samples of surficial materials from the Eastern United States, and the greater abundance of heavy metals in the same materials of the Western United States, indicates a regional geochemical pattern of the largest scale. The low concentrations of many elements in soils characterize the Atlantic Coastal Plain. Souls of the Pacific Northwest generally have high concentrations of aluminum, cobalt, iron, scandium, and vanadium, but are low in boron. Soils of the Rocky Mountain region tend to have high concentrations of copper, lead, and zinc. High mercury concentrations in surficial materials are characteristic of Gulf Coast sampling sites and the Atlantic coast sites of Connecticut, Massachusetts, and Maine. At the State level, Florida has the most striking geochemical pattern by having soils that are low in concentrations of most elements considered in this study. Some smaller patterns of element abundance can be noted, but the degree of confidence in the validity of these patterns decreases as the patterns become less extensive.

135Cs/ 137Cs isotopic composition of environmental samples across Europe: Environmental transport and source term emission applications

DOE PAGES

Snow, Mathew S.; Snyder, Darin C.

2015-11-02

135Cs/ 137Cs isotopic analyses represent an important tool for studying the fate and transport of radiocesium in the environment; in this work the 135Cs/ 137Cs isotopic composition in environmental samples taken from across Europe is reported. Surface soil and vegetation samples from western Russia, Ukraine, Austria, and Hungary show consistent aged thermal fission product 135Cs/ 137Cs isotope ratios of 0.58 ± 0.01 (age corrected to 1/1/15), with the exception of one sample of soil-moss from Hungary which shows an elevated 135Cs/ 137Cs ratio of 1.78 ± 0.12. With the exception of the outlier sample from Hungary, surface soil/vegetation data aremore » in quantitative agreement with values previously reported for soils within the Chernobyl exclusion zone, suggesting that radiocesium at these locations is primarily composed of homogenous airborne deposition from Chernobyl. Seawater samples taken from the Irish Sea show 135Cs/ 137Cs isotope ratios of 1.22 ± 0.11 (age corrected to 1/1/15), suggesting aged thermal fission product Cs discharged from Sellafield. Furthermore, the differences in 135Cs/ 137Cs isotope ratios between Sellafield, Chernobyl, and global nuclear weapons testing fallout indicate that 135Cs/ 137Cs isotope ratios can be utilized to discriminate between and track radiocesium transport from different nuclear production source terms, including major emission sources in Europe.« less

Comparative estimations of 137Cs distribution in a boreal forest in northern Sweden using a traditional sampling approach and a portable NaI detector.

PubMed

Plamboeck, A H; Nylén, T; Agren, G

2006-01-01

Field-portable detectors have been frequently used in routine monitoring and hazard assessment studies. However, there have been few thorough attempts to evaluate their potential as an alternative to the traditional procedure of collecting samples and analysing them in the laboratory. Thus, in this study the two approaches were compared in terms of their utility for monitoring (137)Cs activity in the Nyänget catchment in northern Sweden. The objectives were: (i) to determine the (137)Cs activity in soils associated with three types of vegetation, (ii) to map the geographical distribution of (137)Cs using the portable NaI detector connected to a GPS system (GDM-40), (iii) to identify (137)Cs anomalies in the catchment, and (iv) to compare the measurements obtained with the NaI detector and traditional sampling followed by laboratory analysis. Our results demonstrate that the GDM-40 has very good potential for making (137)Cs inventories and for detecting (137)Cs anomalies within large areas. The GDM-40 measurements identified differences between different hydrological areas that were not determined with the soil sampling method. The GDM-40 method is much faster than a traditional soil sampling method. However, soil sampling cannot be totally excluded because it is needed to calibrate the GDM-40. The agreement between the (137)Cs activity values obtained by the two approaches was 20% which is good in the field where so many factors vary.

Apollo rocks, fines and soil cores

NASA Astrophysics Data System (ADS)

Allton, J.; Bevill, T.

Apollo rocks and soils not only established basic lunar properties and ground truth for global remote sensing, they also provided important lessons for planetary protection (Adv. Space Res ., 1998, v. 22, no. 3 pp. 373-382). The six Apollo missions returned 2196 samples weighing 381.7 kg, comprised of rocks, fines, soil cores and 2 gas samples. By examining which samples were allocated for scientific investigations, information was obtained on usefulness of sampling strategy, sampling devices and containers, sample types and diversity, and on size of sample needed by various disciplines. Diversity was increased by using rakes to gather small rocks on the Moon and by removing fragments >1 mm from soils by sieving in the laboratory. Breccias and soil cores are diverse internally. Per unit weight these samples were more often allocated for research. Apollo investigators became adept at wringing information from very small sample sizes. By pushing the analytical limits, the main concern was adequate size for representative sampling. Typical allocations for trace element analyses were 750 mg for rocks, 300 mg for fines and 70 mg for core subsamples. Age-dating and isotope systematics allocations were typically 1 g for rocks and fines, but only 10% of that amount for core depth subsamples. Historically, allocations for organics and microbiology were 4 g (10% for cores). Modern allocations for biomarker detection are 100mg. Other disciplines supported have been cosmogenic nuclides, rock and soil petrology, sedimentary volatiles, reflectance, magnetics, and biohazard studies . Highly applicable to future sample return missions was the Apollo experience with organic contamination, estimated to be from 1 to 5 ng/g sample for Apollo 11 (Simonheit &Flory, 1970; Apollo 11, 12 &13 Organic contamination Monitoring History, U.C. Berkeley; Burlingame et al., 1970, Apollo 11 LSC , pp. 1779-1792). Eleven sources of contaminants, of which 7 are applicable to robotic missions, were identified and reduced; thus, improving Apollo 12 samples to 0.1 ng/g. Apollo sample documentation preserves the parentage, orientation, and location, packaging, handling and environmental histories of each of the 90,000 subsamples currently curated. Active research on Apollo samples continues today, and because 80% by weight of the Apollo collection remains pristine, researchers have a reservoir of material to support studies well into the future.

A New Method for Estimating Bacterial Abundances in Natural Samples using Sublimation

NASA Technical Reports Server (NTRS)

Glavin, Daniel P.; Cleaves, H. James; Schubert, Michael; Aubrey, Andrew; Bada, Jeffrey L.

2004-01-01

We have developed a new method based on the sublimation of adenine from Escherichia coli to estimate bacterial cell counts in natural samples. To demonstrate this technique, several types of natural samples including beach sand, seawater, deep-sea sediment, and two soil samples from the Atacama Desert were heated to a temperature of 500 C for several seconds under reduced pressure. The sublimate was collected on a cold finger and the amount of adenine released from the samples then determined by high performance liquid chromatography (HPLC) with UV absorbance detection. Based on the total amount of adenine recovered from DNA and RNA in these samples, we estimated bacterial cell counts ranging from approx. l0(exp 5) to l0(exp 9) E. coli cell equivalents per gram. For most of these samples, the sublimation based cell counts were in agreement with total bacterial counts obtained by traditional DAPI staining. The simplicity and robustness of the sublimation technique compared to the DAPI staining method makes this approach particularly attractive for use by spacecraft instrumentation. NASA is currently planning to send a lander to Mars in 2009 in order to assess whether or not organic compounds, especially those that might be associated with life, are present in Martian surface samples. Based on our analyses of the Atacama Desert soil samples, several million bacterial cells per gam of Martian soil should be detectable using this sublimation technique.

Analysis of bacterial populations in the environment using two-dimensional gel electrophoresis of genomic DNA and complementary DNA.

PubMed

Liu, Guo-Hua; Nakamura, Tatsuo; Amemiya, Takashi; Rajendran, Narasimmalu; Itoh, Kiminori

2011-01-01

Two-dimensional gel electrophoresis (2-DGE) mapping of genomic DNA and complementary DNA (cDNA) amplicons was attempted to analyze total and active bacterial populations within soil and activated sludge samples. Distinct differences in the number and species of bacterial populations and those that were metabolically active at the time of sampling were visually observed especially for the soil community. Statistical analyses and sequencing based on the 2-DGE data further revealed the relationships between total and active bacterial populations within each community. This high-resolution technique would be useful for obtaining a better understanding of bacterial population structures in the environment.

Inorganic Carbon Isotopes and Chemical Characterization of Watershed Drainages, Barrow, Alaska, 2013

DOE Data Explorer

Heikoop, Jeffrey H.; Throckmorton, Heather M.; Wilson, Cathy J.; Newman, Brent D.

2016-02-22

Data include results from geochemical and isotopic analyses for samples collected in Barrow, Alaska during July and September 2013. Samples were soil pore waters from 17 drainages that could be interlake (basins with polygonal terrain), different-aged drain thaw lake basins (young, medium, old, or ancient), or a combination of different aged basins. Samples taken in different drainage flow types at three different depths at each location in and around the Barrow Environmental Observatory.

Topsoil investigation on two different urban areas in West Hungary

NASA Astrophysics Data System (ADS)

Horváth, Adrienn; Bidló, András

2015-04-01

Heavy metal contents of urban soils in two different urban areas have been investigated in Sopron town (169.01 km2) and in Szombathely town 97.50 km2) in Hungary. In a standard network 208 samples have been collected Sopron from 0 to 10 and from 10 to 20 cm depth. 164 samples have been taken on 88 points in the area of Szombathely. We analysed all of the soil samples with ICP equipment applying Lakanen-Erviö method (Ammonium Acetate - EDTA (pH 4.65)) and we focused on Co, Cu, Ni, Pb and Zn during the evaluation. The soils of suburb are determined largely by the bedrock, but in the downtown the soil pH was alkaline in soils of Sopron. Therefore, the toxic elements are still accumulated in the topsoil. The lead content was very high (suggested pollution limit >25 mg Pb/kg) in both layers on the whole area of the town. Urban soils with high copper content (among 611 mg and 1221 mg Cu/kg) have been collected from garden and viticulture areas. According to our measurements we found the highest average values in the soils of parks. The pH of urban topsoils of Szombathely was mostly neutral and it was lower in soil of agricultural areas on the suburb, where the artificial fertiliser is still used. The Pb content was high (more than 25 mg Pb/kg) in case of 13 samples next to traffic roads of the town. The Co, Cu and Ni results were below the suggested Hungarian background limits. The Zn values were above the suggested Hungarian pollution (20 mg Zn/kg) and interventional limits (>40 mg Zn/kg) in most cases. According to the results we found the highest average values of heavy metals in the soil of traffic areas or next to the Gyöngyös creek, which could be originated from traffic contamination, binding in the soil of urban green spaces, thus possibly affects human health. The research is supported by the "Agroclimate-2" (VKSZ_12-1-2013-0034) joint EU-national research project. Keywords: anthropogenic effects, heavy metal content, lead pollution, polluted urban soils

Source to sink characterization of dissolved organic matter in a tropical karst system

NASA Astrophysics Data System (ADS)

Lechleitner, Franziska; Lang, Susan Q.; McIntyre, Cameron; Baldini, James U. L.; Dittmar, Thorsten; Eglinton, Timothy I.

2016-04-01

Karst systems are widespread surface features present on all continents. They are characterized by complex hydrology with a multitude of possible flow regimes, from diffuse seepage through the host rock to fracture flow in larger conduits. As stalagmite proxy records are important indicators of past terrestrial climate conditions, detailed understanding of the biogeochemistry of cave systems and their relationships to the overlying karst network is crucial. Microbial communities that drive the carbon cycle in caves are nourished by dissolved organic matter (DOM) carried with water into the cave system. Water samples from the Yok Balum cave in Belize were collected for DOM analysis, including soil waters, drip waters and pool waters from inside the cave. Additionally, DOM extracts from a stalagmite from the same cave were analysed to examine DOM signatures and test their applicability for reconstruction of environmental conditions. Ultrahigh-resolution mass spectrometry (via the ESI-FT-ICR-MS technique) yielded detailed molecular fingerprints on DOM from these samples. Several thousand molecular formulae of DOM compounds were identified. In addition, radiocarbon analyses were performed on the DOM samples to gain information on karst turnover times. A principal component analysis of the molecular data revealed a clear gradient between soil waters and cave waters, as soil waters were enriched in highly unsaturated oxygen-rich compounds (typical for vascular plants), which were much less abundant in drip waters. Conversely, peptides, which can originate from bacterial processes, were present only in the drip waters. Our data clearly show connectivity between the cave and overlaying soils, and reworking of DOM by the cave bacterial community. Furthermore, we found molecular evidence for the selective removal of vascular plant-derived DOM in the caves, possibly due to abiotic interactions with minerals.

Abundance and distribution of selected elements in soils, stream sediments, and selected forage plants from desert tortoise habitats in the Mojave and Colorado deserts, USA

USGS Publications Warehouse

Chaffee, M.A.; Berry, K.H.

2006-01-01

A baseline and background chemical survey was conducted in southeastern California, USA, to identify potential sources of toxicants in natural and anthropogenically-altered habitats of the threatened desert tortoise (Gopherus agassizii). Soil, stream sediment, and plant samples were collected from six tortoise habitat study areas in the Mojave and Colorado deserts and analysed for up to 66 different elements. The chemical analyses provided new information on the abundances and distributions of selected elements in this region. Soil, stream-sediment, and plant analyses showed distinct variations in bulk chemistries from locality to locality. Variations were, in general, consistent with the many types of exposed rock units in the region, their highly variable bulk mineralogies, and chemical contents. Of elements in soils that might have been toxic to tortoises, only As seemed to be anomalous region-wide. Some soil and plant anomalies were clearly anthropogenic. In the Rand and Atolia mining districts, soil anomalies for As, Au, Cd, Hg, Sb, and(or) W and plant anomalies for As, Sb, and(or) W extend as far as ???15 km outward from the present area of mining; soils containing anomalous Hg were found at least 6 km away from old piles of tailings. The anomalous concentrations of As and Hg may have been the source of elevated levels of these elements found in ill tortoises from the region. In the Goldstone mining district, soil anomalies extended several km from the mining area. These areas probably represented anthropogenic surface contamination of dust redistributed by wind, vehicles, and rainfall. One of two study areas transected by a paved road (Chemehuevi Valley) showed weakly elevated levels of Pb, which extended as far as ???22 m from the pavement edge and were probably related to vehicle exhaust. No soil or plant samples from historically used military areas (Goldstone, Goffs, Chemehuevi Valley, Chuckwalla Bench) contained anomalous concentrations of the elements As, Cu, Cr, Fe, Pb, or Zn that could be ascribed to military maneuvers, vehicles, or ordnance. For future studies, the distribution and abundance of elements in the tortoise forage plants need to be evaluated for the respective roles of dust and systemic uptake. Additional chemical data from tortoise necropsies and nutritional studies are needed to determine the effects of potentially toxic elements in tortoise habitats on their health. ?? 2006 Elsevier Ltd. All rights reserved.

Post-wildfire erosion in mountainous terrain leads to rapid and major redistribution of soil organic carbon

NASA Astrophysics Data System (ADS)

Abney, Rebecca B.; Sanderman, Jonathan; Johnson, Dale; Fogel, Marilyn L.; Berhe, Asmeret Asefaw

2017-11-01

Catchments impacted by wildfire typically experience elevated rates of post-fire erosion and formation and deposition of pyrogenic carbon (PyC). To better understand the role of erosion in post-fire soil carbon dynamics, we determined distribution of soil organic carbon in different chemical fractions before and after the Gondola fire in South Lake Tahoe, CA. We analyzed soil samples from eroding and depositional landform positions in control and burned plots pre- and post-wildfire (in 2002, 2003, and 10-years post-fire in 2013). We determined elemental concentrations, stable isotope compositions, and biochemical composition of organic matter (OM) using mid-infrared (MIR) spectroscopy for all of the samples. A subset of samples was analyzed by 13C cross polarization magic angle spinning nuclear magnetic resonance spectroscopy (CPMAS 13C-NMR). We combined the MIR and CPMAS 13C-NMR data in the Soil Carbon Research Program partial least squares regression model to predict distribution of soil carbon into three different fractions: 1) particulate, humic, and resistant organic matter fractions representing relatively fresh larger pieces of OM, 2) fine, decomposed OM, and 3) pyrogenic C, respectively. Samples from the post-fire eroding landform position showed no major difference in soil organic carbon (SOC) fractions one year post-fire. The depositional samples, however, had increased concentrations of all SOC fractions, particularly the fraction that resembles PyC, one year post-fire (2002), which had a mean of 160 g/kg compared with burned hillslope soils, which had 84 g/kg. The increase in all SOC fractions in the post-fire depositional landform position one year post-fire indicates significant lateral mobilization of the eroded PyC. In addition, our NMR analyses revealed a post-fire increase in both the aryl and O-aryl carbon compounds in the soils from the depositional landform position, indicating increases in soil PyC concentrations post-fire. After 10 years, the C concentration from all three fractions declined in the depositional landform position to below pre-fire levels likely due to further erosion or elevated rates of decomposition. Thus, we found, at this site, that both fire and erosion exert significant influence on the distribution of PyC throughout a landscape and its long-term fate in the soil system.

The micromorphology of Younger Dryas-aged black mats from Nevada, Arizona, Texas and New Mexico

NASA Astrophysics Data System (ADS)

Harris-Parks, Erin

2016-01-01

Black mats are organic-rich sediments and soils that form in wet environments associated with spring discharge. Micromorphological and geochemical analyses of 25 black mats dating to the Younger Dryas Chronozone (12.9-11.7 ka) and early Holocene were conducted to determine their composition and depositional environment. Samples were collected from Arizona, New Mexico, Texas and Nevada. Micromorphological analyses were conducted on thin sections using polarized and blue fluorescent light. These analyses determined that black mats contain humic acids, fine (5-20 μm) plant fragments, diatoms, phytoliths, and gastropods. The dominant type of organic matter in black mats is derived from herbaceous plants, contradicting previous studies that supported algal or charcoal sources. Differences in the micromorphological characteristics of the samples revealed that black mats formed as three different types, organic horizons, moist soils and, ponded sediments, depending on their topographic position in relation to the water table. The microscopic evidence found in black mats supports the presence of widespread wet environments in Nevada and Arizona during the Younger Dryas Chronozone, clearly indicating a sustained period of greater effective moisture, optimal for spring discharge and black mat formation.

Insights into soil carbon dynamics across climatic gradients from carbon-pool specific radiocarbon analyses

NASA Astrophysics Data System (ADS)

van der Voort, Tessa Sophia; Hagedorn, Frank; McIntyre, Cameron; Zell, Claudia; Eglinton, Timothy Ian

2017-04-01

Soil carbon constitutes the largest terrestrial reservoir of organic carbon, and therefore understanding the mechanisms and drivers of carbon stabilization is crucial, especially in the framework of climate change. The understanding of the dependence of soil organic turnover in specific carbon pools as related to e.g. climate, soil texture and mineralogy is limited. In this framework, radiocarbon constitutes a uniquely powerful tool that help to unravel carbon dynamics from decadal to millennial timescales. This project combines bulk and pool-specific radiocarbon analyses in the top and deep soil on a wide range of forested soils that span a large climatic gradient (MAT 1.3-9.2°C, MAP 600 to 2100 mm m-2y-1). These well-studies sites are part of the Long-Term Forest Ecosystem Research (LWF) program of the Swiss Federal Institute for Forest, Snow and Landscape research (WSL). This study aims to combine the insights gained from bulk and pool-specific turnover to environmental conditions and molecular composition of soil carbon. The pools investigated span the mineral-associated (occluded and heavy fractions from density fractionation) and potentially water-soluble (free light fractions from density fractionation and water extractable organic carbon) organic carbon fractions. Pool-specific radiocarbon work is augmented by the measurement of abundance of compounds such as alkanes, fatty acids and lignin phenols on a subset of samples. Initial results show disparate patterns depending on soil type and in particular soil texture, which could be indicative of various stabilization mechanisms in different soils. Overall, this study provides new insights into the controls of soil organic matter dynamics as related to environmental conditions, in particular in specific sub-pools of carbon.

The Northern Circumpolar Soil Carbon Database: spatially distributed datasets of soil coverage and soil carbon storage in the northern permafrost regions

NASA Astrophysics Data System (ADS)

Hugelius, G.; Tarnocai, C.; Broll, G.; Canadell, J. G.; Kuhry, P.; Swanson, D. K.

2012-08-01

High latitude terrestrial ecosystems are key components in the global carbon (C) cycle. Estimates of global soil organic carbon (SOC), however, do not include updated estimates of SOC storage in permafrost-affected soils or representation of the unique pedogenic processes that affect these soils. The Northern Circumpolar Soil Carbon Database (NCSCD) was developed to quantify the SOC stocks in the circumpolar permafrost region (18.7 × 106 km2). The NCSCD is a polygon-based digital database compiled from harmonized regional soil classification maps in which data on soil order coverage has been linked to pedon data (n = 1647) from the northern permafrost regions to calculate SOC content and mass. In addition, new gridded datasets at different spatial resolutions have been generated to facilitate research applications using the NCSCD (standard raster formats for use in Geographic Information Systems and Network Common Data Form files common for applications in numerical models). This paper describes the compilation of the NCSCD spatial framework, the soil sampling and soil analyses procedures used to derive SOC content in pedons from North America and Eurasia and the formatting of the digital files that are available online. The potential applications and limitations of the NCSCD in spatial analyses are also discussed. The database has the doi:10.5879/ecds/00000001. An open access data-portal with all the described GIS-datasets is available online at: http://dev1.geo.su.se/bbcc/dev/ncscd/.

Heavy metals distribution in soils surrounding an abandoned mine in NW Madrid (Spain) and their transference to wild flora.

PubMed

Moreno-Jiménez, Eduardo; Peñalosa, Jesús M; Manzano, Rebeca; Carpena-Ruiz, Ramón O; Gamarra, Roberto; Esteban, Elvira

2009-03-15

The present work concerns the distribution and mobility of heavy metals (Fe, Mn, Cu, Zn and Cd) in the surrounding soils of a mine site and their transfer to wild flora. Thus, soils and plants were sampled from a mining valley in NW Madrid (Spain), and total and extractable heavy metals were analysed. Soils affected by mining activities presented total Cd, Cu and Zn concentrations above toxic thresholds. The percentage of extractable element was highest for Cd and lowest for Cu. A highly significant correlation was observed between the total and extractable concentrations of metals in soils, indicating that, among the factors studied, total metals concentration is the most relevant for heavy metals extractability in these soils. (NH(4))(2)SO(4)-extractable metal concentrations in soils are correlated better with metal concentrations in several plant species than total metals in soils, and thus can be used as a suitable and robust method for the estimation of the phytoavailable fraction present in soils. Twenty-five vascular plant species (3 ferns and 22 flowering plants) were analysed, in order to identify exceptional characteristics that would be interesting for soil phytoremediation and/or reclamation. High Cd and Zn concentrations have been found in the aerial parts of Hypericum perforatum (Cd), Salix atrocinerea (Cd, Zn) and Digitalis thapsi (Cd, Zn). The present paper is, to the best of our knowledge, the first report of the metal accumulation ability of the two latter plant species. The phytoremediation ability of S. atrocinerea for Cd and Zn was estimated, obtaining intervals of time that could be considered suitable for the phytoextraction of polluted soils.

Ge/Si Ratios Record the Impact of Forest Conversion to Cropland on Soil Chemical Weathering Processes and Solutes Export to Rivers

NASA Astrophysics Data System (ADS)

Ameijeiras-Marino, Y.; Opfergelt, S.; Derry, L. A.; Robinet, J.; Delmelle, P.

2016-12-01

Soil weathering processes influence solute fluxes to rivers, playing a major role in global biogeochemical cycles. Land use change such as forest conversion to cropland enhances soil erosion, which mobilizes solutes and exposes new mineral surfaces to weathering processes, changing soil weathering degree. However, the impact of forest conversion to cropland on soil weathering degree and solute fluxes exported from soils to rivers remain poorly quantified. This study assesses the soil weathering degree and uses a geochemical tracer of weathering, Ge/Si ratio, to provide new insights on the impact of soil weathering processes under anthropogenic forcing on the transfer of solutes to rivers. A subtropical site was studied in Rio Grande do Sul (Brazil). This area is characterized by mean annual rainfall of 1800 mm, with strong rain events mobilizing high sediment load. A forested catchment is considered as the reference and compared to a catchment cultivated for the past 100 years (similar lithology and climate). Bedrock, soil, soil pore water and stream water (during base flow and rain events) samples were analysed for their chemical and mineralogical compositions and Ge/Si ratios (combined isotope dilution, HR-ICP-MS and hydride generation). Chemical and mineralogical analyses highlight that forest conversion to cropland decreases the soil weathering degree on steep slopes. Ge/Si ratios (μmol/mol) are comparable in bulk soils between the forested (2.33 ± 0.50) and the cultivated catchment (2.61 ± 0.62), but differ in soil pore waters between forest (0.47 ± 0.16) and culture (0.73 ± 0.15) indicating differences on soil weathering processes. The response of Ge/Si ratios in stream waters to a rain event differs between forest and culture, highlighting a larger contribution from soil pore waters to stream waters under culture. Altogether, our data support that land use history has an impact on the present day soil weathering processes and on the solute export to rivers.

Seasonal Variation in Soil Microbial Biomass, Bacterial Community Composition and Extracellular Enzyme Activity in Relation to Soil Respiration in a Northern Great Plains Grassland

NASA Astrophysics Data System (ADS)

Wilton, E.; Flanagan, L. B.

2014-12-01

Soil respiration rate is affected by seasonal changes in temperature and moisture, but is this a direct effect on soil metabolism or an indirect effect caused by changes in microbial biomass, bacterial community composition and substrate availability? In order to address this question, we compared continuous measurements of soil and plant CO2 exchange made with an automatic chamber system to analyses conducted on replicate soil samples collected on four dates during June-August. Microbial biomass was estimated from substrate-induced respiration rate, bacterial community composition was determined by 16S rRNA amplicon pyrosequencing, and β-1,4-N-acetylglucosaminidase (NAGase) and phenol oxidase enzyme activities were assayed fluorometrically or by absorbance measurements, respectively. Soil microbial biomass declined from June to August in strong correlation with a progressive decline in soil moisture during this time period. Soil bacterial species richness and alpha diversity showed no significant seasonal change. However, bacterial community composition showed a progressive shift over time as measured by Bray-Curtis dissimilarity. In particular, the change in community composition was associated with increasing relative abundance in the alpha and delta classes, and declining abundance of the beta and gamma classes of the Proteobacteria phylum during June-August. NAGase showed a progressive seasonal decline in potential activity that was correlated with microbial biomass and seasonal changes in soil moisture. In contrast, phenol oxidase showed highest potential activity in mid-July near the time of peak soil respiration and ecosystem photosynthesis, which may represent a time of high input of carbon exudates into the soil from plant roots. This input of exudates may stimulate the activity of phenol oxidase, a lignolytic enzyme involved in the breakdown of soil organic matter. These analyses indicated that seasonal change in soil respiration is a complex interaction between temporal changes in soil environmental factors and biological changes in the plant and microbial community that affect soil respiratory metabolism.

Isolation of Rhizobium Bacteria from Forage Legumes for the Development of Ruminant Feed

NASA Astrophysics Data System (ADS)

Fuskhah, E.; Purbajanti, E. D.; Anwar, S.

2018-02-01

The aimed of the study was to explore the presence of Rhizobium bacteria along the northern coast of Central Java, to develop a saline-resistant legumes. Rhizobium bacteria is a mutualistic bacterium capable of symbiosis with legumes so that legumes crop yields increase. The research begins with sampling of soil and root nodule of forage legumes along the Northern Coast of Central Java including Tegal, Pekalongan, Semarang, Demak, Pati. Soil samples were analysed for salinity, Total Dissolved Solids, and pH. Rhizobium bacteria were isolated from the acquired root nodule, then identified by biochemical test to ensure that the isolates obtained were Rhizobium bacteria. The results showed that the five districts/municipal sites sampled by the soil have very low salinity to very high levels. The highest level of soil salinity was found in Demak (Sayung) which has an electrical conductivity value (EC) of 17.77 mmhos/cm. The EC values of legumes overgrown soils showed a low salinity level while bare soils have high salinity levels. Feed crops legumes that could be found in the northern coast of Central Java were Centrosema pubescens, Calopogonium mucunoides, Leucaena leucocephala, and Sesbania grandiflora. The study obtained 6 kinds of isolates of rhizobium bacteria isolated from forage legumes, included 1) Centrosema pubescens isolated from Pekalongan, 2) Centrosema pubescens isolated from Tegal, 3) Calopogonium mucunoides isolated from Pekalongan, 4) Leucaenaleucocephala isolated from Tegal, 5) Leucaena leucocephala isolated from Semarang, 6) Sesbania grandiflora isolated from Tegal.

Compaction of forest soil by logging machinery favours occurrence of prokaryotes.

PubMed

Schnurr-Pütz, Silvia; Bååth, Erland; Guggenberger, Georg; Drake, Harold L; Küsel, Kirsten

2006-12-01

Soil compaction caused by passage of logging machinery reduces the soil air capacity. Changed abiotic factors might induce a change in the soil microbial community and favour organisms capable of tolerating anoxic conditions. The goals of this study were to resolve differences between soil microbial communities obtained from wheel-tracks (i.e. compacted) and their adjacent undisturbed sites, and to evaluate differences in potential anaerobic microbial activities of these contrasting soils. Soil samples obtained from compacted soil had a greater bulk density and a higher pH than uncompacted soil. Analyses of phospholipid fatty acids demonstrated that the eukaryotic/prokaryotic ratio in compacted soils was lower than that of uncompacted soils, suggesting that fungi were not favoured by the in situ conditions produced by compaction. Indeed, most-probable-number (MPN) estimates of nitrous oxide-producing denitrifiers, acetate- and lactate-utilizing iron and sulfate reducers, and methanogens were higher in compacted than in uncompacted soils obtained from one site that had large differences in bulk density. Compacted soils from this site yielded higher iron-reducing, sulfate-reducing and methanogenic potentials than did uncompacted soils. MPN estimates of H2-utilizing acetogens in compacted and uncompacted soils were similar. These results indicate that compaction of forest soil alters the structure and function of the soil microbial community and favours occurrence of prokaryotes.

Space Weathering of Lunar Rocks and Regolith Grains

NASA Technical Reports Server (NTRS)

Keller, L. P.

2013-01-01

The exposed surfaces of lunar soil grains and lunar rocks become modified and coated over time with a thin rind of material (patina) through complex interactions with the space environment. These interactions encompass many processes including micrometeorite impacts, vapor and melt deposition, and solar wind implantation/sputtering effects that collectively are referred to as "space weathering". Studies of space weathering effects in lunar soils and rocks provide important clues to understanding the origin and evolution of the lunar regolith as well as aiding in the interpretation of global chemical and mineralogical datasets obtained by remote-sensing missions. The interpretation of reflectance spectra obtained by these missions is complicated because the patina coatings obscure the underlying rock mineralogy and compositions. Much of our understanding of these processes and products comes from decades of work on remote-sensing observations of the Moon, the analysis of lunar samples, and laboratory experiments. Space weathering effects collectively result in a reddened continuum slope, lowered albedo, and attenuated absorption features in reflectance spectra of lunar soils as compared to finely comminuted rocks from the same Apollo sites. Space weathering effects are largely surface-correlated, concentrated in the fine size fractions, and occur as amorphous rims on individual soil grains. Rims on lunar soil grains are highly complex and span the range between erosional surfaces modified by solar wind irradiation to depositional surfaces modified by the condensation of sputtered ions and impact-generated vapors. The optical effects of space weathering effects are directly linked to the production of nanophase Fe metal in lunar materials]. The size of distribution of nanophase inclusions in the rims directly affect optical properties given that large Fe(sup o) grains (approx 10 nm and larger) darken the sample (lower albedo) while the tiny Fe(sup o) grains (<5nm) are the primary agent in spectral "reddening". More recent work has focused on the nature and abundance of OH/H2O in the lunar regolith using orbital data and samples analyses. Advances in sample preparation techniques have made possible detailed analyses of patina-coated rock surfaces. Major advances are occurring in quantifying the rates and efficiency of space weathering processes through laboratory experimentation.

Nondestructive pollution exposure assessment in the European hedgehog (Erinaceus europaeus): I. Relationships between concentrations of metals and arsenic in hair, spines, and soil.

PubMed

D'Havé, Helga; Scheirs, Jan; Mubiana, Valentine Kayawe; Verhagen, Ron; Blust, Ronny; De Coen, Wim

2005-09-01

Conventional metal exposure assessment in terrestrial mammals is generally based on organ analyses of sacrificed animals. Few studies on mammals use nondestructive methodologies despite the growing ethical concern over the use of destructive sampling. Nondestructive methods involve minimal stress to populations and permit successive biomonitoring of the same populations and individuals. In the present study we assessed metal exposure of hedgehogs (Erinaceus europaeus) by investigating relationships between concentrations of metals (Ag, Al, Cd, Co, Cr, Cu, Fe, Mn, Ni, Pb, Zn) and As in soil samples and in hair and spines of hedgehogs. Samples were collected in seven study sites along a metal pollution gradient, characterized by decreasing total soil Ag, As, Cd, Cu, Ni, and Pb concentrations with increasing distance from a nonferrous metallurgic factory. For a number of elements, soil contamination was related both to distance to the smelter and to habitat. Soil concentrations were positively related to levels in hair and spines for Ag, As, Cd, and Pb and thus to hedgehog exposure. Metal concentrations in soil did not relate to metal concentrations in hair and spines for essential elements (e.g., Cu, Fe, Mn, Ni, and Zn), except Co in hair and soil. Our results demonstrate that, at least for nonessential elements, concentrations in soils can be used to predict contamination of these elements in hedgehogs or vice versa. Furthermore, hedgehog exposure increased toward the smelter and was higher for hedgehogs foraging in grasslands than for animals foraging in the forest. Moreover, we believe that hair and spines are promising tools in terrestrial wildlife exposure assessment studies of metals and As.

Degradation of soil cyanide by single and mixed cultures of Pseudomonas stutzeri and Bacillus subtilis.

PubMed

Nwokoro, Ogbonnaya; Dibua, Marie Esther Uju

2014-03-01

The aim of this investigation was to study whether certain bacteria could be used for cyanide degradation in soil. The bacteria Pseudomonas stutzeri and Bacillus subtilis were selected based on their good growth in a minimal medium containing 0.8 mg mL-1 potassium cyanide (KCN). In this study we tested their ability to reduce cyanide levels in a medium containing 1.5 mg mL-1 of KCN. Although both microorganisms reduced cyanide levels, Pseudomonas stutzeri was the more effective test organism. Later on, the selected cultures were grown, diluted and their various cell concentrations were used individually and in combination to test their ability of cyanide degradation in soil samples collected around a cassava processing mill. Bacillus subtilis caused degradation of soil cyanide from 0.218 mg g-1 soil immediately with an inoculum concentration of 0.1 (OD600nm) to 0.072 mg g-1 soil after 10 days with an inoculum concentration of 0.6 (OD600nm) implying a 66.9 % reduction. Pseudomonas stutzeri cell concentration of 0.1 (OD600nm) decreased soil cyanide from 0.218 mg g-1 soil initially to 0.061 mg g-1 soil after 10 days with an inoculum concentration of 0.6 (OD600nm) (72 % reduction). The mixed culture of the two bacteria produced the best degradation of soil cyanide from 0.218 mg g-1 soil sample with a combined inoculum concentration of 0.1 (OD600nm) initially to 0.025 mg g-1 soil with a combined inoculum concentration of 0.6 (OD600nm) after 10 days incubation resulting in an 88.5 % degradation of soil cyanide. The analysed bacteria displayed high cyanide degradation potential and may be useful for efficient decontamination of cyanide contaminated sites.

Impact of an intense rainfall event on soil properties following a wildfire in a Mediterranean environment (North-East Spain).

PubMed

Francos, Marcos; Pereira, Paulo; Alcañiz, Meritxell; Mataix-Solera, Jorge; Úbeda, Xavier

2016-12-01

Intense rainfall events after severe wildfires can have an impact on soil properties, above all in the Mediterranean environment. This study seeks to examine the immediate impact and the effect after a year of an intense rainfall event on a Mediterranean forest affected by a high severity wildfire. The work analyses the following soil properties: soil aggregate stability, total nitrogen, total carbon, organic and inorganic carbon, the C/N ratio, carbonates, pH, electrical conductivity, extractable calcium, magnesium, sodium, potassium, available phosphorous and the sodium and potassium adsorption ratio (SPAR). We sampled soils in the burned area before, immediately after and one year after the rainfall event. The results showed that the intense rainfall event did not have an immediate impact on soil aggregate stability, but a significant difference was recorded one year after. The intense precipitation did not result in any significant changes in soil total nitrogen, total carbon, inorganic carbon, the C/N ratio and carbonates during the study period. Differences were only registered in soil organic carbon. The soil organic carbon content was significantly higher after the rainfall than in the other sampling dates. The rainfall event did increase soil pH, electrical conductivity, major cations, available phosphorous and the SPAR. One year after the fire, a significant decrease in soil aggregate stability was observed that can be attributed to high SPAR levels and human intervention, while the reduction in extractable elements can be attributed to soil leaching and vegetation consumption. Overall, the intense rainfall event, other post-fire rainfall events and human intervention did not have a detrimental impact on soil properties in all probability owing to the flat plot topography. Copyright © 2016 Elsevier B.V. All rights reserved.

Endospores of halophilic bacteria of the family Bacillaceae isolated from non-saline Japanese soil may be transported by Kosa event (Asian dust storm)

PubMed Central

Echigo, Akinobu; Hino, Miki; Fukushima, Tadamasa; Mizuki, Toru; Kamekura, Masahiro; Usami, Ron

2005-01-01

Background Generally, extremophiles have been deemed to survive in the extreme environments to which they had adapted to grow. Recently many extremophiles have been isolated from places where they are not expected to grow. Alkaliphilic microorganisms have been isolated from acidic soil samples with pH 4.0, and thermophiles have been isolated from samples of low temperature. Numerous moderately halophilic microorganisms, defined as those that grow optimally in media containing 0.5–2.5 Molar (3–15%) NaCl, and halotolerant microorganisms that are able to grow in media without added NaCl and in the presence of high NaCl have been isolated from saline environments such as salterns, salt lakes and sea sands. It has tacitly been believed that habitats of halophiles able to grow in media containing more than 20% (3.4 M) are restricted to saline environments, and no reports have been published on the isolation of halophiles from ordinary garden soil samples. Results We demonstrated that many halophilic bacteria that are able to grow in the presence of 20% NaCl are inhabiting in non-saline environments such as ordinary garden soils, yards, fields and roadways in an area surrounding Tokyo, Japan. Analyses of partial 16S rRNA gene sequences of 176 isolates suggested that they were halophiles belonging to genera of the family Bacillaceae, Bacillus (11 isolates), Filobacillus (19 isolates), Gracilibacillus (6 isolates), Halobacillus (102 isolates), Lentibacillus (1 isolate), Paraliobacillus (5 isolates) and Virgibacillus (17 isolates). Sequences of 15 isolates showed similarities less than 92%, suggesting that they may represent novel taxa within the family Bacillaceae. Conclusion The numbers of total bacteria of inland soil samples were in a range from 1.4 × 107/g to 1.1 × 106/g. One tenth of the total bacteria was occupied by endospore-forming bacteria. Only very few of the endospore-forming bacteria, roughly 1 out of 20,000, are halophilic bacteria. Most of the halophilic bacteria were surviving as endospores in the soil samples, in a range of less than 1 to about 500/g soil. Samples collected from seashore in a city confronting Tokyo Bay gave the total numbers of bacteria and endospores roughly 1000 time smaller than those of inland soil samples. Numbers of halophilic bacteria per gram, however, were almost the same as those of inland soil samples. A possible source of the halophilic endospore originating from Asian dust storms is discussed. PMID:16242015

Organic vs. conventional grassland management: do (15)N and (13)C isotopic signatures of hay and soil samples differ?

PubMed

Klaus, Valentin H; Hölzel, Norbert; Prati, Daniel; Schmitt, Barbara; Schöning, Ingo; Schrumpf, Marion; Fischer, Markus; Kleinebecker, Till

2013-01-01

Distinguishing organic and conventional products is a major issue of food security and authenticity. Previous studies successfully used stable isotopes to separate organic and conventional products, but up to now, this approach was not tested for organic grassland hay and soil. Moreover, isotopic abundances could be a powerful tool to elucidate differences in ecosystem functioning and driving mechanisms of element cycling in organic and conventional management systems. Here, we studied the δ(15)N and δ(13)C isotopic composition of soil and hay samples of 21 organic and 34 conventional grasslands in two German regions. We also used Δδ(15)N (δ(15)N plant - δ(15)N soil) to characterize nitrogen dynamics. In order to detect temporal trends, isotopic abundances in organic grasslands were related to the time since certification. Furthermore, discriminant analysis was used to test whether the respective management type can be deduced from observed isotopic abundances. Isotopic analyses revealed no significant differences in δ(13)C in hay and δ(15)N in both soil and hay between management types, but showed that δ(13)C abundances were significantly lower in soil of organic compared to conventional grasslands. Δδ(15)N values implied that management types did not substantially differ in nitrogen cycling. Only δ(13)C in soil and hay showed significant negative relationships with the time since certification. Thus, our result suggest that organic grasslands suffered less from drought stress compared to conventional grasslands most likely due to a benefit of higher plant species richness, as previously shown by manipulative biodiversity experiments. Finally, it was possible to correctly classify about two third of the samples according to their management using isotopic abundances in soil and hay. However, as more than half of the organic samples were incorrectly classified, we infer that more research is needed to improve this approach before it can be efficiently used in practice.

Organic vs. Conventional Grassland Management: Do 15N and 13C Isotopic Signatures of Hay and Soil Samples Differ?

PubMed Central

Klaus, Valentin H.; Hölzel, Norbert; Prati, Daniel; Schmitt, Barbara; Schöning, Ingo; Schrumpf, Marion; Fischer, Markus; Kleinebecker, Till

2013-01-01

Distinguishing organic and conventional products is a major issue of food security and authenticity. Previous studies successfully used stable isotopes to separate organic and conventional products, but up to now, this approach was not tested for organic grassland hay and soil. Moreover, isotopic abundances could be a powerful tool to elucidate differences in ecosystem functioning and driving mechanisms of element cycling in organic and conventional management systems. Here, we studied the δ15N and δ13C isotopic composition of soil and hay samples of 21 organic and 34 conventional grasslands in two German regions. We also used Δδ15N (δ15N plant - δ15N soil) to characterize nitrogen dynamics. In order to detect temporal trends, isotopic abundances in organic grasslands were related to the time since certification. Furthermore, discriminant analysis was used to test whether the respective management type can be deduced from observed isotopic abundances. Isotopic analyses revealed no significant differences in δ13C in hay and δ15N in both soil and hay between management types, but showed that δ13C abundances were significantly lower in soil of organic compared to conventional grasslands. Δδ15N values implied that management types did not substantially differ in nitrogen cycling. Only δ13C in soil and hay showed significant negative relationships with the time since certification. Thus, our result suggest that organic grasslands suffered less from drought stress compared to conventional grasslands most likely due to a benefit of higher plant species richness, as previously shown by manipulative biodiversity experiments. Finally, it was possible to correctly classify about two third of the samples according to their management using isotopic abundances in soil and hay. However, as more than half of the organic samples were incorrectly classified, we infer that more research is needed to improve this approach before it can be efficiently used in practice. PMID:24205126

Convergence of soil nitrogen isotopes across global climate gradients

USGS Publications Warehouse

Craine, Joseph M.; Elmore, Andrew J.; Wang, Lixin; Augusto, Laurent; Baisden, W. Troy; Brookshire, E. N. J.; Cramer, Michael D.; Hasselquist, Niles J.; Hobbie, Erik A.; Kahmen, Ansgar; Koba, Keisuke; Kranabetter, J. Marty; Mack, Michelle C.; Marin-Spiotta, Erika; Mayor, Jordan R.; McLauchlan, Kendra K.; Michelsen, Anders; Nardoto, Gabriela B.; Oliveira, Rafael S.; Perakis, Steven S.; Peri, Pablo L.; Quesada, Carlos A.; Richter, Andreas; Schipper, Louis A.; Stevenson, Bryan A.; Turner, Benjamin L.; Viani, Ricardo A. G.; Wanek, Wolfgang; Zeller, Bernd

2015-01-01

Quantifying global patterns of terrestrial nitrogen (N) cycling is central to predicting future patterns of primary productivity, carbon sequestration, nutrient fluxes to aquatic systems, and climate forcing. With limited direct measures of soil N cycling at the global scale, syntheses of the 15 N: 14 N ratio of soil organic matter across climate gradients provide key insights into understanding global patterns of N cycling. In synthesizing data from over 6000 soil samples, we show strong global relationships among soil N isotopes, mean annual temperature (MAT), mean annual precipitation (MAP), and the concentrations of organic carbon and clay in soil. In both hot ecosystems and dry ecosystems, soil organic matter was more enriched in 15 N than in corresponding cold ecosystems or wet ecosystems. Below a MAT of 9.8°C, soil δ15N was invariant with MAT. At the global scale, soil organic C concentrations also declined with increasing MAT and decreasing MAP. After standardizing for variation among mineral soils in soil C and clay concentrations, soil δ15N showed no consistent trends across global climate and latitudinal gradients. Our analyses could place new constraints on interpretations of patterns of ecosystem N cycling and global budgets of gaseous N loss.

Convergence of soil nitrogen isotopes across global climate gradients.

PubMed

Craine, Joseph M; Elmore, Andrew J; Wang, Lixin; Augusto, Laurent; Baisden, W Troy; Brookshire, E N J; Cramer, Michael D; Hasselquist, Niles J; Hobbie, Erik A; Kahmen, Ansgar; Koba, Keisuke; Kranabetter, J Marty; Mack, Michelle C; Marin-Spiotta, Erika; Mayor, Jordan R; McLauchlan, Kendra K; Michelsen, Anders; Nardoto, Gabriela B; Oliveira, Rafael S; Perakis, Steven S; Peri, Pablo L; Quesada, Carlos A; Richter, Andreas; Schipper, Louis A; Stevenson, Bryan A; Turner, Benjamin L; Viani, Ricardo A G; Wanek, Wolfgang; Zeller, Bernd

2015-02-06

Quantifying global patterns of terrestrial nitrogen (N) cycling is central to predicting future patterns of primary productivity, carbon sequestration, nutrient fluxes to aquatic systems, and climate forcing. With limited direct measures of soil N cycling at the global scale, syntheses of the (15)N:(14)N ratio of soil organic matter across climate gradients provide key insights into understanding global patterns of N cycling. In synthesizing data from over 6000 soil samples, we show strong global relationships among soil N isotopes, mean annual temperature (MAT), mean annual precipitation (MAP), and the concentrations of organic carbon and clay in soil. In both hot ecosystems and dry ecosystems, soil organic matter was more enriched in (15)N than in corresponding cold ecosystems or wet ecosystems. Below a MAT of 9.8°C, soil δ(15)N was invariant with MAT. At the global scale, soil organic C concentrations also declined with increasing MAT and decreasing MAP. After standardizing for variation among mineral soils in soil C and clay concentrations, soil δ(15)N showed no consistent trends across global climate and latitudinal gradients. Our analyses could place new constraints on interpretations of patterns of ecosystem N cycling and global budgets of gaseous N loss.

Surface roughness and runoff

NASA Astrophysics Data System (ADS)

Szabó, Judit Alexandra; Szabó, Boglárka; Centeri, Csaba; Józsa, Sándor; Szalai, Zoltán; Jakab, Gergely

2017-04-01

Soil surface conditions changes dynamically during a precipitation event. The changes involve compaction, aggregate detachment and of course transportation by runoff or drop erosion. Those processes together have an effect on the transport process of the soil particles and aggregates, and influences the roughness of the soil surface as well. How does surface roughness have an effect on the aggregate and particle size distribution of the sediment? How does the sediment connectivity change from precipitation event to precipitation event? Beside the previous questions on of the main aim of the present research is to apply rainfall simulators for the built-up of a complex approach, rather than to concentrate only on one of two factors. Hence four types of sample were collected during the simulation experiment sequences: 1) photos were taken about the surface before and after the rain, in order to build digital surface models; 2) all the runoff and eroded sediment was collected; 3) soil loss due to drop erosion was also sampled separately; and 4) undisturbed crust samples were collected for thin section analyses. Though the runoff ratio was smaller than what, the preliminary results suggest that the sediment connectivity covered bigger area on crusty surface, than on a rough one. These ambiguous data may be connected to the soil crust development. J. A. Szabó wish to acknowledge the support of NTP-NFTÖ-16-0203. G. Jakab wish to acknowledge the support of János Bolyai Fellowship.

Nature and Properties of Lateritic Soils Derived from Different Parent Materials in Taiwan

PubMed Central

2014-01-01

The objective of this study was to investigate the physical, chemical, and mineralogical composition of lateritic soils in order to use these soils as potential commercial products for industrial application in the future. Five lateritic soils derived from various parent materials in Taiwan, including andesite, diluvium, shale stone, basalt, and Pleistocene deposit, were collected from the Bt1 level of soil samples. Based on the analyses, the Tungwei soil is an alfisol, whereas other lateritic soils are ultisol. Higher pH value of Tungwei is attributed to the large amounts of Ca2+ and Mg2+. Loupi and Pingchen soils would be the older lateritic soils because of the lower active iron ratio. For the iron minerals, the magnetic iron oxides such as major amounts of magnetite and maghemite were found for Tamshui and Tungwei lateritic soils, respectively. Lepidocrocite was only found in Soka soil and intermediate amounts of goethite were detected for Loupi and Pingchen soils. After Mg-saturated and K-saturated processes, major amounts of mixed layer were observed in Loupi and Soka soils, whereas the montmorillonite was only detected in Tungwei soil. The investigation results revealed that the parent materials would play an important role during soil weathering process and physical, chemical, and mineralogy compositions strongly affect the formation of lateritic soils. PMID:24883366

Nature and properties of lateritic soils derived from different parent materials in Taiwan.

PubMed

Ko, Tzu-Hsing

2014-01-01

The objective of this study was to investigate the physical, chemical, and mineralogical composition of lateritic soils in order to use these soils as potential commercial products for industrial application in the future. Five lateritic soils derived from various parent materials in Taiwan, including andesite, diluvium, shale stone, basalt, and Pleistocene deposit, were collected from the Bt1 level of soil samples. Based on the analyses, the Tungwei soil is an alfisol, whereas other lateritic soils are ultisol. Higher pH value of Tungwei is attributed to the large amounts of Ca(2+) and Mg(2+). Loupi and Pingchen soils would be the older lateritic soils because of the lower active iron ratio. For the iron minerals, the magnetic iron oxides such as major amounts of magnetite and maghemite were found for Tamshui and Tungwei lateritic soils, respectively. Lepidocrocite was only found in Soka soil and intermediate amounts of goethite were detected for Loupi and Pingchen soils. After Mg-saturated and K-saturated processes, major amounts of mixed layer were observed in Loupi and Soka soils, whereas the montmorillonite was only detected in Tungwei soil. The investigation results revealed that the parent materials would play an important role during soil weathering process and physical, chemical, and mineralogy compositions strongly affect the formation of lateritic soils.

Bacterial diversity in the active stage of a bioremediation system for mineral oil hydrocarbon-contaminated soils.

PubMed

Popp, Nicole; Schlömann, Michael; Mau, Margit

2006-11-01

Soils contaminated with mineral oil hydrocarbons are often cleaned in off-site bioremediation systems. In order to find out which bacteria are active during the degradation phase in such systems, the diversity of the active microflora in a degrading soil remediation system was investigated by small-subunit (SSU) rRNA analysis. Two sequential RNA extracts from one soil sample were generated by a procedure incorporating bead beating. Both extracts were analysed separately by generating individual SSU rDNA clone libraries from cDNA of the two extracts. The sequencing results showed moderate diversity. The two clone libraries were dominated by Gammaproteobacteria, especially Pseudomonas spp. Alphaproteobacteria and Betaproteobacteria were two other large groups in the clone libraries. Actinobacteria, Firmicutes, Bacteroidetes and Epsilonproteobacteria were detected in lower numbers. The obtained sequences were predominantly related to genera for which cultivated representatives have been described, but were often clustered together in the phylogenetic tree, and the sequences that were most similar were originally obtained from soils and not from pure cultures. Most of the dominant genera in the clone libraries, e.g. Pseudomonas, Acinetobacter, Sphingomonas, Acidovorax and Thiobacillus, had already been detected in (mineral oil hydrocarbon) contaminated environmental samples. The occurrence of the genera Zymomonas and Rhodoferax was novel in mineral oil hydrocarbon-contaminated soil.

A Simple Approach for Measuring Emission Patterns of Vapor Phase Mercury under Temperature-Controlled Conditions from Soil

PubMed Central

Kim, Ki-Hyun; Yoon, Hye-On; Jung, Myung-Chae; Oh, Jong-Min; Brown, Richard J. C.

2012-01-01

In an effort to study the possible effects of climate change on the behavior of atmospheric mercury (Hg), we built a temperature–controlled microchamber system to measure its emission from top soils. To this end, mercury vapour emission rates were investigated in the laboratory using top soil samples collected from an urban area. The emissions of Hg, when measured as a function of soil temperature (from ambient levels up to 70°C at increments of 10°C), showed a positive correlation with rising temperature. According to the continuous analyses of the Hg vapor given off by the identical soil samples, evasion rate diminished noticeably with increasing number of repetitions. The experimental results, if examined in terms of activation energy (Ea), showed highly contrasting patterns between the single and repetitive runs. Although the results of the former exhibited Ea values smaller than the vaporization energy of Hg (i.e., <14 Kcal mol−1), those of the latter increased systematically with increasing number of repetitions. As such, it is proposed that changes in the magnitude of Ea values can be used as a highly sensitive criterion to discriminate the important role of vaporization from other diverse (biotic/abiotic) processes occurring in the soil layer. PMID:22927791

Ionic gold in calcrete revealed by LA-ICP-MS, SXRF and XANES

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lintern, Melvyn J.; Hough, Robert M.; Ryan, Chris G.

2009-04-02

Highly anomalous Au concentrations in calcrete were discovered in 1987 at the Bounty Gold Deposit, Western Australia. A strong correlation was noted between the Ca, Mg, Sr and Au in soil profiles which have not only attracted the interest of mineral explorers but also chemists, soil scientists, metallurgists and climatologists. Gold has been considered an inert element and so its strong association with the alkaline earth group of relatively mobile elements is both remarkable and intriguing. Despite widespread interest, there have been few published papers on the Au-calcrete phenomenon. Here, we present work conducted on calcareous soil samples from abovemore » the Bounty mineralization in Western Australia, prior to mining. Using SXRF (synchrotron X-ray fluorescence) and XANES (micro-X-ray absorption near-edge structure), we have shown for the first time the distribution of Au in calcrete and that it occurs in both particulate and ionic form. Much of the ionic Au associated with Br is found in a root tubule. The observations are consistent with an evapotranspiration model for the formation of Au in the calcrete; Au has been mobilized then precipitated as vadose water has been removed from the soil by trees and shrubs. While the association between Au and Ca is very strong in bulk sample analyses down the soil profile, other detailed analyses on sub-samples using wet chemical, LA-ICP-MS (laser ablation inductively coupled mass spectrometry) and SXRF techniques show that it is not apparent at the sub-millimeter scale. This suggests that the Au and Ca are behaving similarly but independently and they do not (at the {micro}m scale) co-precipitate with carbonate minerals. These results corroborate other studies that suggest biotic influences can affect the mobilization and distribution of Au in surficial materials. Water-extractable Au in calcrete has been reported previously and the ionic Au described in this study likely represents that soluble component. The presence of easily solubilised Au in soils has been widely discussed and exploited for mineral exploration.« less

Identification of Stenotrophomonas maltophilia strains isolated from environmental and clinical samples: a rapid and efficient procedure.

PubMed

Pinot, C; Deredjian, A; Nazaret, S; Brothier, E; Cournoyer, B; Segonds, C; Favre-Bonté, S

2011-11-01

Aim of the study is to identify accurately Stenotrophomonas maltophilia isolates recovered from environmental and clinical samples. Recovery of Sten. maltophilia-like isolates from soil samples using the vancomycin, imipenem, amphotericin B (VIA) selective agar medium enabled distinction of various morphotype colonies. A set of soil and clinical isolates was tested for species identification using different methods. 16S rDNA analyses showed the dark green with a blue halo morphotype to be typical Sten. maltophilia strains. The API-20NE, Vitek-2 and Biolog phenotypic analyses typically used for the identification of clinical isolates did not perform well on these soil isolates. The species-specific PCR screening targeting Sten. maltophilia 23S rDNA and the multiplex smeD/ggpS PCR, differentiating Sten. maltophilia from Stenotrophomonas rhizophila, were tested for improvement of these identification schemes. The latter multiplex PCR identified all isolates tested in this study, whatever be their origin. Isolation on VIA medium and confirmation of Sten. maltophilia species membership by smeD PCR is proposed to identify environmental and clinical isolates of Sten. maltophilia. The proposed approach enables isolation and identification of Sten. maltophilia from different environments in an easy and rapid way. This approach will be useful to accurately manage studies on the abundance and distribution of Sten. maltophilia in hospital and nonhospital environments. © 2011 The Authors. Journal of Applied Microbiology © 2011 The Society for Applied Microbiology.

Enhanced Preliminary Assessment. Kapalama Military Reservation Honolulu, Hawaii

DTIC Science & Technology

1990-02-01

through 28 July 1989. Past site conditions and management practices were evaluated, based on readdy available records and the recollections of people...soil borings. These wells should be strategically placed to characterize the groundwater at areas of concern. These samples should be analyzed for TPHs...be strategically placed te characterize the groundwater at areas of concern. These sample should be analyzed for TPH and VOCs. Additional analyses may

Reflectance spectroscopy for the assessment of soil salt content in soils of the yellow river delta of China

USGS Publications Warehouse

Weng, Yongling; Gong, P.; Zhu, Z.

2008-01-01

There has been growing interest in the use of reflectance spectroscopy as a rapid and inexpensive tool for soil characterization. In this study, we collected 95 soil samples from the Yellow River Delta of China to investigate the level of soil salinity in relation to soil spectra. Sample plots were selected based on a field investigation and the corresponding soil salinity classification map to maximize variations of saline characteristics in the soil. Spectral reflectances of air-dried soil samples were measured using an Analytical Spectral Device (ASD) spectrometer (350-2500 nm) with an artificial light source. In the Yellow River Delta, the dominant chemical in the saline soil was NaCl and MgCl2. Soil spectra were analysed using two-thirds of the available samples, with the remaining one-third withheld for validation purposes. The analysis indicated that with some preprocessing, the reflectance at 1931-2123 nm and 2153-2254 nm was highly correlated with soil salt content (SSC). In the spectral region of 1931-2123 nm, the correlation R ranged from -0.80 to -0.87. In the region of 2153-2254 nm, the SSC was positively correlated with preprocessed reflectance (0.79-0.88). The preprocessing was done by fitting a convex hull to the reflectance curve and dividing the spectral reflectance by the value of the corresponding convex hull band by band. This process is called continuum removal, and the resulting ratio is called continuum removed reflectance (CR reflectance). However, the SSC did not have a high correlation with the unprocessed reflectance, and the correlation was always negative in the entire spectrum (350-2500 nm) with the strongest negative correlation at 1981 nm (R = -0.63). Moreover, we found a strong correlation (R=0.91) between a soil salinity index (SSI: Constructed using CR reflectance at 2052 nm and 2203 nm) and SSC. We estimated SSC as a function of SSI and SSI' (SSI': Constructed using unprocessed reflectance at 2052 nm and 2203 nm) using univariate regression. Validation of the estimation of SSC was conducted by comparing the estimated SSC with the holdout sample points. The comparison produced an estimated root mean squared error (RMSE) of 0.986 (SSC ranging from 0.06 to 12.30 g kg-1) and R2 of 0.873 for SSC with SSI as independent variable and RMSE of 1.248 and R2 of 0.8 for SSC with SSI' as independent variable. This study showed that a soil salinity index developed for CR reflectance at 2052 nm and 2203 nm on the basis of spectral absorption features of saline soil can be used as a quick and inexpensive method for soil salt-content estimation.

Soil risk assessment of As and Zn contamination in a coal mining region using geostatistics [corrected].

PubMed

Komnitsas, Kostas; Modis, Kostas

2006-12-01

The present paper aims to map As and Zn contamination and assess the risk for agricultural soils in a wider disposal site containing wastes derived from coal beneficiation. Geochemical data related to environmental studies show that the waste characteristics favor solubilisation and mobilization of inorganic contaminants and in some cases the generation of acidic leachates. 135 soil samples were collected from a 34 km(2) area and analysed by using geostatistics under the maximum entropy principle in order to produce risk assessment maps and estimate the probability of soil contamination. In addition, the present paper discusses the main issues related to risk assessment in wider mining and waste disposal sites in order to assist decision makers in selecting feasible rehabilitation schemes.

Test plan for the soils facility demonstration: A petroleum contaminated soil bioremediation facility

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lombard, K.H.

1994-08-01

The objectives of this test plan are to show the value added by using bioremediation as an effective and environmentally sound method to remediate petroleum contaminated soils (PCS) by: demonstrating bioremediation as a permanent method for remediating soils contaminated with petroleum products; establishing the best operating conditions for maximizing bioremediation and minimizing volatilization for SRS PCS during different seasons; determining the minimum set of analyses and sampling frequency to allow efficient and cost-effective operation; determining best use of existing site equipment and personnel to optimize facility operations and conserve SRS resources; and as an ancillary objective, demonstrating and optimizing newmore » and innovative analytical techniques that will lower cost, decrease time, and decrease secondary waste streams for required PCS assays.« less

Edaphic and light conditions of sympatric plant morphotypes in western Amazonia.

PubMed

Roncal, Julissa

2014-01-01

Here I present a dataset of edaphic and light conditions associated with the occurrence of sympatric morphotypes of Geonomamacrostachys (Arecaceae/Palmae), a candidate case study from Amazonia hypothesized to have evolved under ecological speciation. Transects were established in three lowland rainforests in Peru, and the abundance of each local morphotype of this species was recorded in a total area of 4.95 hectares. Composite soil samples and hemispherical photographs were taken along the transects were the species occurred to obtain information on soil nutrients, soil texture, and indirect measurements of light availability. The raw and summary tables disclose the characteristics of each study site and habitats within them, which could be useful to soil scientists, ecologists, and conservationists engaged in similar research activities or meta-analyses in Amazonia.

The development of Operational Intervention Levels (OILs) for Soils - A decision support tool in nuclear and radiological emergency response

NASA Astrophysics Data System (ADS)

Lee Zhi Yi, Amelia; Dercon, Gerd; Blackburn, Carl; Kheng, Heng Lee

2017-04-01

In the event of a large-scale nuclear accident, the swift implementation of response actions is imperative. For food and agriculture, it is important to restrict contaminated food from being produced or gathered, and to put in place systems to prevent contaminated produce from entering the food chain. Emergency tools and response protocols exist to assist food control and health authorities but they tend to focus on radioactivity concentrations in food products as a means of restricting the distribution and sale of contaminated produce. Few, if any, emergency tools or protocols focus on the food production environment, for example radioactivity concentrations in soils. Here we present the Operational Intervention Levels for Soils (OIL for Soils) concept, an optimization tool developed at the IAEA to facilitate agricultural decision making and to improve nuclear emergency preparedness and response capabilities. Effective intervention relies on the prompt availability of radioactivity concentration data and the ability to implement countermeasures. Sampling in food and agriculture can be demanding because it may involve large areas and many sample types. In addition, there are finite resources available in terms of manpower and laboratory support. Consequently, there is a risk that timely decision making will be hindered and food safety compromised due to time taken to sample and analyse produce. However, the OILs for Soils concept developed based on experience in Japan can help in this situation and greatly assist authorities responsible for agricultural production. OILs for Soils - pre-determined reference levels of air dose rates linked to radionuclide concentrations in soils - can be used to trigger response actions particularly important for agricultural and food protection. Key considerations in the development of the OILs for Soils are: (1) establishing a pragmatic sampling approach to prioritize and optimize available resources and data requirements for decision making in agricultural sites: (2) creating a system that is adaptable to different countries, and; (3) developing a framework to calculate default values of OILs for Soils for application during an emergency. The OILs for Soils reference levels are calculated using a mathematical model. Empirical equations, paired with radionuclide data (e.g. Cs-134, Cs-137 and I-131) from the ICRU 53 report, are utilized to determine soil contamination from aerial monitoring air dose rate data. Modelling allows soil contamination values to be readily approximated and this is used to prioritize soil and food sampling sites. Reference levels are based on a model that considers radionuclide transfer factors for up-take into plants, soil density, and soil sampling depth. Decision actions for determined reference levels are suggested for processed foods, animal products, animal feed and crop products (including plants at the growing stage, mature stage, fallow farmland, and forestry products). With these steps, OILs for Soils provide practical guidance that will equip authorities to respond efficiently and help maintain the safety of the food supply during large-scale nuclear or radiological emergency situations.

Landscape Changes Influence the Occurrence of the Melioidosis Bacterium Burkholderia pseudomallei in Soil in Northern Australia

PubMed Central

Kaestli, Mirjam; Mayo, Mark; Harrington, Glenda; Ward, Linda; Watt, Felicity; Hill, Jason V.; Cheng, Allen C.; Currie, Bart J.

2009-01-01

Background The soil-dwelling saprophyte bacterium Burkholderia pseudomallei is the cause of melioidosis, a severe disease of humans and animals in southeast Asia and northern Australia. Despite the detection of B. pseudomallei in various soil and water samples from endemic areas, the environmental habitat of B. pseudomallei remains unclear. Methodology/Principal Findings We performed a large survey in the Darwin area in tropical Australia and screened 809 soil samples for the presence of these bacteria. B. pseudomallei were detected by using a recently developed and validated protocol involving soil DNA extraction and real-time PCR targeting the B. pseudomallei–specific Type III Secretion System TTS1 gene cluster. Statistical analyses such as multivariable cluster logistic regression and principal component analysis were performed to assess the association of B. pseudomallei with environmental factors. The combination of factors describing the habitat of B. pseudomallei differed between undisturbed sites and environmentally manipulated areas. At undisturbed sites, the occurrence of B. pseudomallei was found to be significantly associated with areas rich in grasses, whereas at environmentally disturbed sites, B. pseudomallei was associated with the presence of livestock animals, lower soil pH and different combinations of soil texture and colour. Conclusions/Significance This study contributes to the elucidation of environmental factors influencing the occurrence of B. pseudomallei and raises concerns that B. pseudomallei may spread due to changes in land use. PMID:19156200

Source identification and spatial distribution of heavy metals in tobacco-growing soils in Shandong province of China with multivariate and geostatistical analysis.

PubMed

Liu, Haiwei; Zhang, Yan; Zhou, Xue; You, Xiuxuan; Shi, Yi; Xu, Jialai

2017-02-01

Samples of surface soil from tobacco (Nicotiana tabacum L.) fields were analysed for heavy metals and showed the following concentrations (mean of 246 samples, mg/kg): As, 5.10; Cd, 0.11; Cr, 49.49; Cu, 14.72; Hg, 0.08; Ni, 19.28; Pb. 20.20 and Zn, 30.76. The values of the index of geoaccumulation (I geo ) and of the enrichment factor indicated modest enrichment with As, Cd, Cr, Hg, Ni or Pb. Principal component analysis and cluster analysis correctly allocated each investigated element to its source, whether anthropogenic or natural. The results were consistent with estimated inputs of heavy metals from fertilizers, irrigation water and atmospheric deposition. The variation in the concentrations of As, Cd, Cu, Pb and Zn in the soil was mainly due to long-term agricultural practises, and that of Cr and Ni was mainly due to the soil parent material, whereas the source of Hg was industrial activity, which ultimately led to atmospheric deposition. Atmospheric deposition was the main exogenous source of heavy metals, and fertilizers also played an important role in the accumulation of these elements in soil. Identifying the sources of heavy metals in agricultural soils can serve as a basis for appropriate action to control and reduce the addition of heavy metals to cultivated soils.

Analysis of chromium status in the revegetated flora of a tannery waste site and microcosm studies using earthworm E. fetida.

PubMed

Nirola, Ramkrishna; Megharaj, Mallavarapu; Subramanian, Avudainayagam; Thavamani, Palanisami; Ramadass, Kavitha; Aryal, Rupak; Saint, Christopher

2018-02-01

Chromium from tannery waste dump site causes significant environmental pollution affecting surrounding flora and fauna. The primary aims of this study were to survey vegetation, investigate the degree of soil pollution occurring near tannery waste dump site and make a systematic evaluation of soil contamination based on the chromium levels found in plants and earthworms from the impacted areas. This paper presents the pollution load of toxic heavy metals, and especially chromium, in 10 soil samples and 12 species of plants. Soil samples were analysed for heavy metals by using ICP-MS/ICP-OES method. Results indicated that Cr in soils exceeded soil quality guideline limits (SQGL). The total chromium present in the above ground parts of plants ranged from 1.7 mg kg -1 in Casuarina sp. to 1007 mg kg -1 in Sonchus asper. The Cr bioaccumulation in Eisenia fetida from tannery waste soil ranged from 5 to 194 mg kg -1 . The high enrichment factor of Cr in S. asper and bioaccumulation factor in earthworms indicate that there is a steady increase of toxic chromium risk in this area, which could be correlated with the past dumping activity. Emphasis needs to be put on control measures of pollution and remediation techniques in such areas to achieve an ecologically sustainable industrialisation.

Soil strength and macropore volume limit root elongation rates in many UK agricultural soils.

PubMed

Valentine, Tracy A; Hallett, Paul D; Binnie, Kirsty; Young, Mark W; Squire, Geoffrey R; Hawes, Cathy; Bengough, A Glyn

2012-07-01

Simple indicators of crop and cultivar performance across a range of soil types and management are needed for designing and testing sustainable cropping practices. This paper determined the extent to which soil chemical and physical properties, particularly soil strength and pore-size distribution influences root elongation in a wide range of agricultural top soils, using a seedling-based indicator. Intact soil cores were sampled from the topsoil of 59 agricultural fields in Scotland, representing a wide geographic spread, range of textures and management practices. Water release characteristics, dry bulk density and needle penetrometer resistance were measured on three cores from each field. Soil samples from the same locations were sieved, analysed for chemical characteristics, and packed to dry bulk density of 1.0 g cm(-3) to minimize physical constraints. Root elongation rates were determined for barley seedlings planted in both intact field and packed soil cores at a water content close to field capacity (-20 kPa matric potential). Root elongation in field soil was typically less than half of that in packed soils. Penetrometer resistance was typically between 1 and 3 MPa for field soils, indicating the soils were relatively hard, despite their moderately wet condition (compared with <0.2 MPa for packed soil). Root elongation was strongly linked to differences in physical rather than chemical properties. In field soil root elongation was related most closely to the volume of soil pores between 60 µm and 300 µm equivalent diameter, as estimated from water-release characteristics, accounting for 65.7 % of the variation in the elongation rates. Root elongation rate in the majority of field soils was slower than half of the unimpeded (packed) rate. Such major reductions in root elongation rates will decrease rooting volumes and limit crop growth in soils where nutrients and water are scarce.

Results of the radiological survey at the Town of Tonawanda Landfill, Tonawanda, New York (TNY001)

DOE Office of Scientific and Technical Information (OSTI.GOV)

Rodriguez, R.E.; Murray, M.E.; Uziel, M.S.

At the request of the US Department of Energy (DOE), a team from Oak Ridge National Laboratory conducted a radiological survey at the Town of Tonawanda Landfill, Tonawanda, New York. The survey was performed in September 1991. The purpose of the survey was to determine if radioactive materials from work performed under government contract at the Linde Air Products Division of Union Carbide Corporation, Tonawanda, New York, had been deposited in the landfill. The survey included a surface gamma scan and the collection of soil samples for radionuclide analyses. Results of the survey suggest that material originating at the Lindemore » plant may have been deposited in the landfill. Soil samples S54 and B12 contained technologically enhanced levels of [sup 238]U not unlike the product formerly produced by the Linde plant. In contrast, samples B4A, B5A and B7B, containing elevated concentrations of [sup 226]Ra and [sup 230]Th with much lower concentrations of [sup 238]U, were similar to the residue or byproduct of the refinery operation conducted at the Linde plant. In 24 instances, soil samples from the Town of Tonawanda Landfill exceeded DOE guideline values for [sup 238]U, [sup 226]Ra, and/or [sup 230]Th in surface or subsurface soil. Nine of these samples contained radionuclide concentrations more than 30 times the guideline value.« less

Concentrations of trace elements and iron in the Arctic soils of Belyi Island (the Kara Sea, Russia): patterns of variation across landscapes.

PubMed

Moskovchenko, D V; Kurchatova, A N; Fefilov, N N; Yurtaev, A A

2017-05-01

The concentrations of several trace elements and iron were determined in 26 soil samples from Belyi Island in the Kara Sea (West Siberian sector of Russian Arctic). The major types of soils predominating in the soil cover were sampled. The concentrations of trace elements (mg kg -1 ) varied within the following ranges: 119-561 for Mn, 9.5-126 for Zn, 0.082-2.5 for Cd, <0.5-19.2 for Cu, <0.5-132 for Pb, 0.011-0.081 for Hg, <0.5-10.3 for Co, and 7.6-108 for Cr; the concentration of Fe varied from 3943 to 37,899 mg kg -1 . The impact of particular soil properties (pH, carbon and nitrogen contents, particle-size distribution) on metal concentrations was analyzed by the methods of correlation, cluster, and factor analyses. The correlation analysis showed that metal concentrations are negatively correlated with the sand content and positively correlated with the contents of silt and clay fractions. The cluster analysis allowed separation of the soils into three clusters. Cluster I included the soils with the high organic matter content formed under conditions of poor drainage; cluster II, the low-humus sandy soils of the divides and slopes; and cluster III, saline soils of coastal marshes. It was concluded that the geomorphic position largely controls the soil properties. The obtained data were compared with data on metal concentrations in other regions of the Russian Arctic. In general, the concentrations of trace elements in the studied soils were within the ranges typical of the background Arctic territories. However, some soils of Belyi Island contained elevated concentrations of Pb and Cd.

Towards a global understanding of vertical soil carbon dynamics: meta-analysis of soil 14C data

NASA Astrophysics Data System (ADS)

hatte, C.; Balesdent, J.; Guiot, J.

2012-12-01

Soil represents the largest terrestrial storage mechanism for atmospheric carbon from photosynthesis, with estimates ranging from 1600 Pg C within the top 1 meter to 2350 Pg C for the top 3 meters. These values are at least 2.5 times greater than atmospheric C pools. Small changes in soil organic carbon storage could result in feedback to atmospheric CO2 and the sensitivity of soil organic matter to changes in temperature, and precipitation remains a critical area of research with respect to the global carbon cycle. As an intermediate storage mechanism for organic material through time, the vertical profile of carbon generally shows an age continuum with depth. Radiocarbon provides critical information for understanding carbon exchanges between soils and atmosphere, and within soil layers. Natural and "bomb" radiocarbon has been used to demonstrate the importance and nature of the soil carbon response to climatic and human impacts on decadal to millennial timescales. Radiocarbon signatures of bulk, or chemically or physically fractionated soil, or even of specific organic compounds, offer one of the only ways to infer terrestrial carbon turnover times or test ecosystem carbon models. We compiled data from the literature on radiocarbon distribution on soil profiles and characterized each study according to the following categories: soil type, analyzed organic fraction, location (latitude, longitude, elevation), climate (temperature, precipitation), land use and sampling year. Based on the compiled data, soil carbon 14C profiles were reconstructed for each of the 226 sites. We report here partial results obtained by statistical analyses of portion of this database, i.e. bulk and bulk-like organic matter and sampling year posterior to 1980. We highlight here 14C vertical pattern in relationship with external parameters (climate, location and land use).

Thermomagnetic identification of manganese and iron minerals present in soils and industrial dusts

NASA Astrophysics Data System (ADS)

Wawer, Małgorzata; Rachwał, Marzena; Jabłońska, Mariola; Krzykawski, Tomasz; Magiera, Tadeusz

2017-04-01

Many industries (e.g. metallurgy, power, cement, and coking plants) constitute a sources of industrial dusts containing technogenic magnetic particles (TMP). TMP are mostly iron oxides with ferrimagnetic or antiferromagnetic properties, therefore their presence in dusts, soils and sediments can be easily detected by magnetic susceptibility measurements. TMP, thanks their specific mineral and magnetic properties, and well developed specific surface area, are characterized by a chemical affinity for some elements like heavy metals. The main objective of this study was identification of manganese and iron (hydro)oxides occurring in industrial dusts and soils being under their deposition for long time period. In principle, Mn and Fe (hydro)oxides present in these samples originate from high-temperature technological processes. Soils samples (collected from different soil horizons) taken from surroundings of power station, iron/steel and non-ferrous plants as well as metallurgical dusts and fly ashes from power stations were subjected to investigation. During the studies temperature dependent magnetic susceptibility measurements and X-ray powder diffraction analyses were applied. Thermomagnetic analyses (K-T) revealed differences between samples from particular industries, however an inflexion at 450-500°C of all curves was observed indicating a probable occurrence of maghemite- or titanomagnetite-like phases. The curves of TMP emitted by power plants have inflection at 580 °C indicating that magnetite was the main magnetic phase. In case of TMP originated from non-ferrous metal smelting additional curve deflection at 130 and 210 °C occurred relating to intermediate titanomagnetite or iron sulfides. X-ray diffraction proved the occurrence of magnetite and maghemite in almost all samples, especially connected with power industry and iron/steel metallurgy. Mineral analysis revealed that kind of industrial process influenced on the dominating mineral forms found in polluted soils and specific industrial dusts. Fly ashes were composed mainly of anhydrite (2-46%), quartz (18-33%), muscovite (0-8%), feldspar (0-8%) and hematite (2-8%), while different spinels (19-53%), hematite (0-38%), wüstite (0-40%) and additives of calcite, halite, sylvine and graphite are the components of metallurgical dusts. Dusts from non-ferrous metal smelting contain Pb and Zn minerals: zincite (1-95%), lanarkite (0-45%), gordaite (0-10%), challacoloite and sphalerite. Additionally, some rare minerals were found in these dusts, such as: anglesite, sphalerite, galena, metasideronatrite and in soil, coronadite. Acknowledgements: The research project received funding from the National Science Centre of Poland on the basis of the decision number DEC-2013/09/B/ST10/02227.

From solid to liquid: Assessing the release of carbon from soil into solution in response to forest management

NASA Astrophysics Data System (ADS)

James, J. N.; Gross, C. D.; Butman, D. E.; Harrison, R. B.

2016-12-01

Dissolved organic matter (DOM) is a crucial conduit for internal cycling of carbon within soils as well as for the transfer of organic matter out of soil and into aquatic systems. Little is known about how the quantity, quality, lability and chemical characteristics of DOM changes in response to human management of forest soils. To examine the processes that release soil organic matter (SOM) into solution, we gathered samples from adjacent native and industrially managed Eucalyptus grandis plantation forests across Sao Paulo State, Brazil and from adjacent old-growth and Douglas-fir (Pseudotsuga menzisii) plantation forests in the coastal Pacific Northwest. Samples from each soil horizon were taken from soil profiles excavated to at least 1.5 m at each site. Water extractable organic matter (WEOM) was extracted twice from each sample using 0.5 M K2SO4 and Milli-Q water to quantify both dissolved and exchange phase organic matter. These extracts were measured for total organic carbon (TOC), 13C and 14C, and chemical characteristics were assessed by fluorescence spectroscopy (EEMs and SUVA254). At the same time, solid phase characteristics of the soil samples were quantified, including bulk density, pH, total carbon and nitrogen, microbial biomass, and 13C and 14C. Characterization of bulk SOM was undertaken by Fourier Transform Infrared Spectroscopy (FTIR) by subtracting mineral matrix spectra of each sample from the bulk spectra. Organic matter lability was assessed by incubations using difference in TOC for WEOM extracts and repeated measurement of CO2 efflux for bulk SOM. All together, these analyses permit a unique snapshot of the natural separation of organic matter from solid into liquid phase through the entire soil profile. Initial results reveal that small but measureable quantities of WEOM may be released from deep B and C horizons in soil, and that this material is labile to microbial decomposition. By identifying differences in SOM and DOM cycling due to forest management, this study aims to connect human management of terrestrial forest ecosystems to the transport of organic matter from surface and subsurface horizons to freshwater ecosystems, where it forms a major component of aquatic food webs.

Near infrared spectroscopy for determination of various physical, chemical and biochemical properties in Mediterranean soils.

PubMed

Zornoza, R; Guerrero, C; Mataix-Solera, J; Scow, K M; Arcenegui, V; Mataix-Beneyto, J

2008-07-01

The potential of near infrared (NIR) reflectance spectroscopy to predict various physical, chemical and biochemical properties in Mediterranean soils from SE Spain was evaluated. Soil samples (n=393) were obtained by sampling thirteen locations during three years (2003-2005 period). These samples had a wide range of soil characteristics due to variations in land use, vegetation cover and specific climatic conditions. Biochemical properties also included microbial biomarkers based on phospholipid fatty acids (PLFA). Partial least squares (PLS) regression with cross validation was used to establish relationships between the NIR spectra and the reference data from physical, chemical and biochemical analyses. Based on the values of coefficient of determination (r(2)) and the ratio of standard deviation of validation set to root mean square error of cross validation (RPD), predicted results were evaluated as excellent (r(2)>0.90 and RPD>3) for soil organic carbon, Kjeldahl nitrogen, soil moisture, cation exchange capacity, microbial biomass carbon, basal soil respiration, acid phosphatase activity, β-glucosidase activity and PLFA biomarkers for total bacteria, Gram positive bacteria, actinomycetes, vesicular-arbuscular mycorrhizal fungi and total PLFA biomass. Good predictions (0.81

Effects of the soil pore network architecture on the soil's physical functionalities

NASA Astrophysics Data System (ADS)

Smet, Sarah; Beckers, Eléonore; Léonard, Angélique; Degré, Aurore

2017-04-01

The soil fluid movement's prediction is of major interest within an agricultural or environmental scope because many processes depend ultimately on the soil fluids dynamic. It is common knowledge that the soil microscopic pore network structure governs the inner-soil convective fluids flow. There isn't, however, a general methodthat consider the pore network structure as a variable in the prediction of thecore scale soil's physical functionalities. There are various possible representations of the microscopic pore network: sample scale averaged structural parameters, extrapolation of theoretic pore network, or use of all the information available by modeling within the observed pore network. Different representations implydifferent analyzing methodologies. To our knowledge, few studies have compared the micro-and macroscopic soil's characteristics for the same soil core sample. The objective of our study is to explore the relationship between macroscopic physical properties and microscopic pore network structure. The saturated hydraulic conductivity, the air permeability, the retention curve, and others classical physical parameters were measured for ten soil samples from an agricultural field. The pore network characteristics were quantified through the analyses of X-ray micro-computed tomographic images(micro-CT system Skyscan-1172) with a voxel size of 22 µm3. Some of the first results confirmed what others studies had reported. Then, the comparison between macroscopic properties and microscopic parameters suggested that the air movements depended mostly on the pore connectivity and tortuosity than on the total porosity volume. We have also found that the fractal dimension calculated from the X-ray images and the fractal dimension calculated from the retention curve were significantly different. Our communication will detailthose results and discuss the methodology: would the results be similar with a different voxel size? What are the calculated and measured parameters uncertainties? Sarah Smet, as a research fellow, acknowledges the support of the National Fund for Scientific Research (Brussels, Belgium).

Understanding soil health by capitalizing on long-term field studies

NASA Astrophysics Data System (ADS)

Tavakkoli, Ehsan; Wang, Zhe; VanZweieten, Lukas; Rose, Michael

2017-04-01

Microbial biodiversity in Australian agricultural soils is of paramount importance as it plays a critical role in regulating soil health, plant productivity, and the cycling of carbon, nitrogen, and other nutrients. Agricultural practices strongly affect soil microbial communities by changing the physical and chemical characteristics of the soil in which microorganisms live, thereby affecting their abundance, diversity, and activity. Despite its importance, the specific responses of various microbial groups to changing environmental conditions (e.g. increased/decreased carbon in response to land management) in agricultural soils are not well understood. This knowledge gap is largely due to previous methodological limitations that, until recently, did not allow microbial diversity and functioning to be meaningfully investigated on large numbers of samples. We sampled soils from a field trial on the effect of strategic tillage in no-till systems to examine the potential impact of tillage and stubble management on soil microbial composition. To determine the relative abundance of bacteria and fungi, we used quantitative PCR (qPCR), and to analyze the composition and diversity of the bacterial and fungal communities, we used bar-coded high-throughput sequencing. Bioinformatics of the sequencing generated data was performed using a previously scripted and tested pipeline, and involved allocation of the relevant sequences to their samples of origin according to the bar-code. In parallel, changes in soil quality and microbial functionality were determined using multi-enzyme activity assay and multiple substrate-induced respiration. The extracellular enzyme activities that were measured include: β-1,4-glucosidase, β-D-cellobiohydrolase, β-Xylosidase, and α-1,4-glucosidase which are all relevant to the C cycle; β-1,4-N-acetylglucosaminidase and L-leucine aminopeptidase which are both relevant to the N cycle associated and associated with protein catabolism. In this presentation, analyses of soil health and functionality in relation to its response to various agronomic practices and implications for C sequestration and nutrient cycling will be discussed.

Spectral Characteristics of Salinized Soils during Microbial Remediation Processes.

PubMed

Ma, Chuang; Shen, Guang-rong; Zhi, Yue-e; Wang, Zi-jun; Zhu, Yun; Li, Xian-hua

2015-09-01

In this study, the spectral reflectance of saline soils, the associated soil salt content (SSC) and the concentrations of salt ions were measured and analysed by tracing the container microbial remediation experiments for saline soil (main salt is sodium chloride) of Dongying City, Shandong Province. The sensitive spectral reflectance bands of saline soils to SSC, Cl- and Na+ in the process of microbial remediation were analysed. The average-dimension reduction of these bands was conducted by using a combination of correlation coefficient and decision coefficient, and by gradually narrowing the sampling interval method. Results showed that the tendency and magnitude of the average spectral reflectance in all bands of saline soils during the total remediation processes were nearly consistent with SSC and with Cl- coocentration, respectively. The degree of salinity of the soil, including SSC and salt ion concentrations, had a significant positive correlation with the spectral reflectance of all bands, particularly in the near-infrared band. The optimal spectral bands of SSC were 1370 to 1445 nm and 1447 to 1608 nm, whereas the optimal spectral bands of Cl- and Na+ were 1336 to 1461 nm and 1471 to 1561 nm, respectively. The relationship model among SSC, soil salt ion concentrations (Cl- and Na+) and soil spectral reflectance of the corresponding optimal spectral band was established. The largest R2 of relationship model between SSC and the average reflectance of associated optimal band reached to 0.95, and RMSEC and RMSEP were 1.076 and 0.591, respectively. Significant statistical analysis of salt factors and soil reflectance for different microbial remediation processes indicated that the spectral response characteristics and sensitivity of SSC to soil reflectance, which implied the feasibility of high spectrum test on soil microbial remediation monitoring, also provided the basis for quick nondestructive monitoring soil bioremediation process by soil spectral reflectance.

Soil organic matter stability as indicated by compound-specific radiocarbon analyses

NASA Astrophysics Data System (ADS)

van der Voort, Tessa Sophia; Zell, Claudia; Hagedorn, Frank; McIntyre, Cameron; Eglinton, Timothy Ian

2017-04-01

Carbon storage in soils is increasingly recognized as a key ecosystem function, and molecular-level analyses could be a valuable potential indicator of this storage potential. In this framework, radiocarbon constitutes a powerful tool for unraveling soil carbon dynamics on both decadal as well as centennial and millennial timescales. In this study, we look at the radiocarbon signature of specific compounds (fatty acids and n-alkanes) in two forested ecosystems (temperate and pre-alpine) with the aim of attaining a better understanding of soil organic carbon stability on a molecular level. Radiocarbon dating of the fatty acids and n-alkanes has been coupled to abundance data of these compounds and additionally lignin phenols. We hypothesize that potentially, these long-chain apolar compounds could be a representative indicator of the mineral-bound soil organic carbon pool. These well-studied sites are part of the Long-Term Forest Ecosystem Research (LWF) program of the Swiss Federal Institute for Forest, Snow and Landscape research (WSL). Therefore, a wide suite of ancillary climatic and textural data is available for these sites. Initial results show a wide range of ages in the specific compounds which constitute a much larger range than the ages indicated by the density fractions done on the same samples. Overall, this study explores the use of molecular-level indicators to study soil organic matter dynamics, which could help assess the overall potential vulnerability of soil carbon in various ecosystems.

Soil iron and aluminium concentrations and feet hygiene as possible predictors of Podoconiosis occurrence in Kenya

PubMed Central

Muli, Jacinta; Kagai, Jim

2017-01-01

Background Podoconiosis (mossy foot) is a neglected non-filarial elephantiasis considered to be caused by predisposition to cumulative contact of uncovered feet to irritative red clay soil of volcanic origins in the tropical regions. Data from structured observational studies on occurrence of Podoconiosis and related factors are not available in Kenya. Methodology/Principal findings To establish the occurrence and aspects associated with Podoconiosis, a cross-sectional survey was implemented in an area located within 30 km from the foot of volcanic Mount Longonot in the Great Rift Valley in Kenya. Five villages and 385 households were selected using multistage and systematic random sampling procedures respectively during the survey. Podoconiosis was determined by triangulating (1) the clinical diagnosis, (2) molecular assaying of sputum samples to rule out Wuchereria bancrofti microfilaria and (3) determining the concentration of six elements and properties in the soil known to be associated with Podoconiosis. A structured questionnaire was used to identify possible risk factors. Univariable and multivariable Poisson regression analyses were carried out to determine factors associated with Podoconiosis. Thirteen participants were clinically positive for Podoconiosis giving an overall prevalence of 3.4%. The prevalence ranged between 0% and 18.8% across the five villages. Molecular assay for W. bancrofti test turned negative in the 13 samples. The following factors were positively associated with the Podoconiosis prevalence (P<0.1) in the univariable analyses: (i) age, (ii) gender, (iii) education level, (iv) frequency of washing legs, (v) frequency of wearing shoes, (vi) soil pH, and (vii) village. Unexpectedly, the concentration of soil minerals previously thought to be associated with Podoconiosis was found to be negatively associated with the Podoconiosis prevalence (P<0.1). In the multivariable analyses, only frequency of wearing shoes and village turned out significant (P≤0.05). By modeling the different soil mineral concentrations and pH while adjusting for the variable frequency of wearing shoes, only iron concentration was significant and in the negative dimension (P≤0.05). However, controlling for Iron, Aluminum concentrations turned significant. Conclusion/Significance This study has pointed to a hitherto unreported occurrence of Podoconiosis cases and has contributed to the baseline knowledge on the occurrence of Podoconiosis in Kenya. Consistent with many studies, wearing shoes remain an important risk factor for the occurrence of the disease. However, our findings are inconsistent with some of the hitherto postulations that associate Podoconiosis prevalence with certain minerals in the soil in other regions in Africa. These findings provide new beginnings for the cross-disciplinary research of Podoconiosis in environmental health, socio-ecology and ecological niche and geo-spatial modeling and prediction. PMID:28832604

Results of laboratory testing for diphacinone in seawater, fish, invertebrates, and soil following aerial application of rodenticide on Lehua Island, Kauai County, Hawaii, January 2009

USGS Publications Warehouse

Orazio, Carl E.; Tanner, Michael J.; Swenson, Chris; Herod, Jeffrey J.; Dunlevy, Peter; Gale, Robert W.

2009-01-01

In January 2009, rodenticide bait (Ramik Green pellets) containing the active ingredient diphacinone was aerially applied to Lehua Island. Reported herein are the results of laboratory analyses to determine diphacinone concentrations in samples of seawater, fillet of fish, soft tissue of limpets (opihi), whole-body crabs, and soil collected from Lehua Island, Kauai County, Hawaii, after aerial application of the rodenticide bait. Diphacinone was specifically chosen because of its low toxicity to nontarget organisms. Its use on Lehua Island is the second time it has ever been used for an aerial application to eradicate rodents. Testing of the Lehua Island samples for diphacinone utilized high-performance liquid chromatography with photodiode array detection. No detectable concentrations of diphacinone were found in any of the samples from Lehua Island. The limits of detection for diphacinone were 0.4 nanograms per milliliter (parts per billion) seawater, 15 nanograms per gram (dry weight) soil, 20 nanograms per gram (parts per billion) fish fillet, 13 nanograms per gram whole crab, and 34 nanograms per gram soft tissue limpet.

Chemical and physical analyses of selected plants and soils from Puerto Rico (1981-2000)

Treesearch

M.J. Sanchez; E. Lopez; A.E. Lugo

2015-01-01

This report contains the results of analyses conducted at the chemistry laboratory of the International Institute of Tropical Forestry in Puerto Rico from 1981 to 2000. The data set includes 109,177 plant analyses and 70,729 soil analyses. We report vegetation chemical data by plant part, species, life zone, soil order, geology, or parent material. Soil data are...

Mapping CO2 emission in highly urbanized region using standardized microbial respiration approach

NASA Astrophysics Data System (ADS)

Vasenev, V. I.; Stoorvogel, J. J.; Ananyeva, N. D.

2012-12-01

Urbanization is a major recent land-use change pathway. Land conversion to urban has a tremendous and still unclear effect on soil cover and functions. Urban soil can act as a carbon source, although its potential for CO2 emission is also very high. The main challenge in analysis and mapping soil organic carbon (SOC) in urban environment is its high spatial heterogeneity and temporal dynamics. The urban environment provides a number of specific features and processes that influence soil formation and functioning and results in a unique spatial variability of carbon stocks and fluxes at short distance. Soil sealing, functional zoning, settlement age and size are the predominant factors, distinguishing heterogeneity of urban soil carbon. The combination of these factors creates a great amount of contrast clusters with abrupt borders, which is very difficult to consider in regional assessment and mapping of SOC stocks and soil CO2 emission. Most of the existing approaches to measure CO2 emission in field conditions (eddy-covariance, soil chambers) are very sensitive to soil moisture and temperature conditions. They require long-term sampling set during the season in order to obtain relevant results. This makes them inapplicable for the analysis of CO2 emission spatial variability at the regional scale. Soil respiration (SR) measurement in standardized lab conditions enables to overcome this difficulty. SR is predominant outgoing carbon flux, including autotrophic respiration of plant roots and heterotrophic respiration of soil microorganisms. Microbiota is responsible for 50-80% of total soil carbon outflow. Microbial respiration (MR) approach provides an integral CO2 emission results, characterizing microbe CO2 production in optimal conditions and thus independent from initial difference in soil temperature and moisture. The current study aimed to combine digital soil mapping (DSM) techniques with standardized microbial respiration approach in order to analyse and map CO2 emission and its spatial variability in highly urbanized Moscow region. Moscow region with its variability of bioclimatic conditions and high urbanization level (10 % from the total area) was chosen as an interesting case study. Random soil sampling in different soil zones (4) and land-use types (3 non-urban and 3 urban) was organized in Moscow region in 2010-2011 (n=242). Both topsoil (0-10 cm) and subsoil (10-150 cm) were included. MR for each point was analysed using standardized microbial (basal) respiration approach, including the following stages: 1) air dried soil samples were moisturised up to 55% water content and preincubated (7 days, 22° C) in a plastic bag with air exchange; 2) soil MR (in μg CO2-C g-1) was measured as the rate of CO2 production (22° C, 24 h) after incubating 2g soil with 0.2 μl distilled water; 3) the MR results were used to estimate CO2 emission (kg C m-2 yr-1). Point MR and CO2 emission results obtained were extrapolated for the Moscow region area using regression model. As a result, two separate CO2 maps for topsoil and subsoil were created. High spatial variability was demonstrated especially for the urban areas. Thus standardized MR approach combined with DSM techniques provided a unique opportunity for spatial analysis of soil carbon temporal dynamics at the regional scale.

Measurement of particle size distribution of soil and selected aggregate sizes using the hydrometer method and laser diffractometry

NASA Astrophysics Data System (ADS)

Guzmán, G.; Gómez, J. A.; Giráldez, J. V.

2010-05-01

Soil particle size distribution has been traditionally determined by the hydrometer or the sieve-pipette methods, both of them time consuming and requiring a relatively large soil sample. This might be a limitation in situations, such as for instance analysis of suspended sediment, when the sample is small. A possible alternative to these methods are the optical techniques such as laser diffractometry. However the literature indicates that the use of this technique as an alternative to traditional methods is still limited, because the difficulty in replicating the results obtained with the standard methods. In this study we present the percentages of soil grain size determined using laser diffractometry within ranges set between 0.04 - 2000 μm. A Beckman-Coulter ® LS-230 with a 750 nm laser beam and software version 3.2 in five soils, representative of southern Spain: Alameda, Benacazón, Conchuela, Lanjarón and Pedrera. In three of the studied soils (Alameda, Benacazón and Conchuela) the particle size distribution of each aggregate size class was also determined. Aggregate size classes were obtained by dry sieve analysis using a Retsch AS 200 basic ®. Two hundred grams of air dried soil were sieved during 150 s, at amplitude 2 mm, getting nine different sizes between 2000 μm and 10 μm. Analyses were performed by triplicate. The soil sample preparation was also adapted to our conditions. A small amount each soil sample (less than 1 g) was transferred to the fluid module full of running water and disaggregated by ultrasonication at energy level 4 and 80 ml of sodium hexametaphosphate solution during 580 seconds. Two replicates of each sample were performed. Each measurement was made for a 90 second reading at a pump speed of 62. After the laser diffractometry analysis, each soil and its aggregate classes were processed calibrating its own optical model fitting the optical parameters that mainly depends on the color and the shape of the analyzed particle. As a second alternative a unique optical model valid for a broad range of soils developed by the Department of Soil, Water, and Environmental Science of the University of Arizona (personal communication, already submitted) was tested. The results were compared with the particle size distribution measured in the same soils and aggregate classes using the hydrometer method. Preliminary results indicate a better calibration of the technique using the optical model of the Department of Soil, Water, and Environmental Science of the University of Arizona, which obtained a good correlations (r2>0.85). This result suggests that with an appropriate calibration of the optical model laser diffractometry might provide a reliable soil particle characterization.

Easy and fast extraction methods to determine organochlorine pesticides in sewage sludge, soil, and water samples based at low temperature.

PubMed

Mesquita, Tayane C R; Santos, Rizia R; Cacique, Ane P; De Sá, Ludimara J; Silvério, Flaviano O; Pinho, Gevany P

2018-03-04

Organochlorine pesticides present in sewage sludge can contaminate soil and water when they are used as either fertilizer or agricultural soil conditioner. In this study, the technique solid-liquid extraction with low temperature purification was optimized and validated for determination of ten organochlorine pesticides in sewage sludge and soil samples. Liquid-liquid extraction with low temperature purification was also validated for the same compounds in water. Analyses were performed by gas chromatography-mass spectrometry operating in the selective ion monitoring mode. After optimization, the methods showed recoveries between 70% and 115% with relative standard deviation lower than 13% for all target analytes in the three matrices. The linearity was demonstrated in the range of 20 to 70 µg L -1 , 0.5 to 60 µg L -1 , and 3 to 13 µg L -1 , for sludge, soil, and acetonitrile, respectively. The limit of quantification ranged between 2 and 40 µg kg -1 , 1 and 6 µg kg -1 , and 0.5 µg L -1 for sludge, soil, and water, respectively. The methods were used in the study of pesticide lixiviation carried out in a poly vinyl chlorine column filled with soil, which had its surface layer mixed with sludge. The results showed that pesticides are not leached into soil, part of them is adsorbed by the sewage sludge (4-40%), and most pesticides are lost by volatilization.

Investigation of sterols as potential biomarkers for the detection of pig (S. s. domesticus) decomposition fluid in soils.

PubMed

von der Lühe, Barbara; Dawson, Lorna A; Mayes, Robert W; Forbes, Shari L; Fiedler, Sabine

2013-07-10

This study was carried out to evaluate the potential of using cholesterol and coprostanol, as indicators for the detection of decomposition fluid of buried pigs (S. s. domesticus) in soils. In May 2007, four pig carcasses (∼35kg) were buried in shallow graves (∼40 cm depth) at the University of Ontario Institute of Technology in Canada. Two pigs were exhumed after three months (Pig 1, Pig 2) and six months (Pig 3, Pig 4) post burial. Soil samples were collected beneath the pig carcasses (∼40cm depth) and from grave walls (∼15-20 cm depth) as well as from a parallel control site. Coprostanol and cholesterol were extracted from soils, purified with solid phase extraction (SPE) and analysed with gas chromatography/mass spectrometry (GC/MS). A significant increase in cholesterol concentrations (p<0.05) and amounts of coprostanol were detected in soil located beneath the pig carcasses after three months of burial. It is assumed that during the putrefaction and liquefaction stages of decomposition pig fluid which contains cholesterol and coprostanol is released into the underlying soil. Therefore, cholesterol and coprostanol could be used as potential biomarkers to detect the presence of decomposition fluid three months after burial under comparable soil and environmental conditions. Further research is suggested for additional soil sampling before and after three months to investigate the abundance of these and other sterols. Copyright © 2013 Elsevier Ireland Ltd. All rights reserved.

METAL FRACTIONATION IN SOILS AND ASSESSMENT OF ENVIROMENTAL CONTAMINATION IN THE VALLECAMONICA, ITALY

PubMed Central

Borgese, L.; Federici, S.; Zacco, A.; Gianoncelli, A.; Rizzo, L.; Smith, D. R.; Donna, F.; Lucchini, R.; Depero, L. E.; Bontempi, E.

2013-01-01

Metal contamination was investigated in soils of the Vallecamonica, an area in the northern part of the Brescia province (Italy) where ferroalloy industries were active for a century until 2001. The extent in which emissions from ferroalloy plants affected metal concentration in soils is not known in this area. In this study the geogenic and/or anthropogenic origin of metals in soils were estimated. A modified Community Bureau of Reference sequential chemical extraction method followed by inductive coupled plasma optical emission spectroscopy analyses were employed to evaluate the potential bioavailability of Al, Cd, Mn, Fe, Cr, Zn, and Pb in soils. Principal components analysis was used to assess the relationships among metal sources in soil samples from different locations. This approach allowed to distinguish different loadings and mobilities of metals in soils collected in different areas. Results showed high concentrations and readily extractability of Mn in the Vallecamonica soils, which may suggest potential bioavailability for organisms and may create an environmental risk and potential health risk of human exposure. PMID:23338992

Apollo 16 soils - Grain size analyses and petrography

NASA Technical Reports Server (NTRS)

Heiken, G. H.; Mckay, D. S.; Fruland, R. M.

1973-01-01

Soils from South Ray Crater, North Ray Crater, and the interray area of Station 10 have a similar provenance, containing breccia fragments of low to medium metamorphic grade and low light/dark lithic fragment ratios; these appear to be characteristic of the Cayley Formation. The primary difference between soils possibly derived from North Ray and South Ray craters is in the agglutinate content. A soil from Stone Mountain (Station 4) is characterized by breccia fragments of medium to high metamorphic grade and a high light/dark lithic fragment ratio; this soil may be derived from the Descartes Formation. Differences between the selenomorphic units, the Descartes and Cayley formations, may be lithologic as well as structural. The mean grain size varies from 84 to 280 microns, and all of the samples are poorly to very poorly sorted. There appears to be a relation between the sorting, grain size, and agglutinate content, with the finer-grained, better sorted soils containing more than 30% agglutinates. 'Shadowed' soils, collected close to large boulders, are similar in all respects to the 'reference' soils collected at least 5 m from the boulders.

Impact of seasonal variation on soil bacterial diversity and ecosystem functioning

NASA Astrophysics Data System (ADS)

Amoo, Adenike Eunice; Oluranti Babalola, Olubukola

2017-04-01

Soil biodiversity boosts the functioning of the ecosystem thereby contributing to the provision of various ecosystem services. Understanding the link between biodiversity and ecosystem functioning and their reaction to environmental heterogeneity can maximize the contribution of soil microbes to ecosystem services. The diversity, abundance and function of microorganisms can be altered by seasonal variation. There is a dearth of information on how soil biodiversity respond to environmental changes. The impact of seasonal variation on bacterial communities and its effects on soil functioning in four South African forests was investigated. The samples were analysed for pH, moisture content, total carbon and nitrogen, soil nitrate and extractable phosphate. High-throughput sequencing and quantitative PCR were used to determine the diversity and abundance of bacteria. Community level physiological profiles (CLPPs) were measured using the MicroResp™ method. Enzyme activities were additionally used as proxy for ecosystem functions. The functional genes for nitrification and phosphate solubilisation were also measured. Seasonal variation has strong effects on bacterial communities and consequently soil processes. A reduction in biodiversity has direct results on soil ecosystem functioning.

Soil-vegetation correlations in the Connecticut River floodplain of Western Massachusetts

USGS Publications Warehouse

Veneman, Peter L.M.; Tiner, Ralph W.

1990-01-01

As part of a national study analyzing the relation between hydric soils and wetland vegetation, the vegetation associated with a series of known soils was sampled along the Connecticut River floodplain in Massachusetts. Weighted average and index average (presence/absence) values were calculated for vegetation using wetland ecological index values from the National List of Plant Species that Occur in Wetlands developed by the U.S. Fish and Wildlife Service and procedures developed by T. R. Wentworth and G. P. Johnson at North Carolina State University. Good correspondence between soils and vegetation was recorded with two exceptions. Two typically nonhydric soils were determined to be hydric based on vegetation analyses. Examination of the groundwater hydrology of these two soils confirmed their hydric nature. The authors suggested that one of these soils may need to be redefined and they also suggested that the assigned index values for a few species of vegetation should be reexamined. However, in general the index average values of vegetation based on published wetland index values corresponded with the hydric and nonhydric nature of soils.