The Arctic Soil Bacterial Communities in the Vicinity of a Little Auk Colony

PubMed Central

Zielińska, Sylwia; Kidawa, Dorota; Stempniewicz, Lech; Łoś, Marcin; Łoś, Joanna M.

2016-01-01

Due to deposition of birds' guano, eggshells or feathers, the vicinity of a large seabirds' breeding colony is expected to have a substantial impact on the soil's physicochemical features as well as on diversity of vegetation and the soil invertebrates. Consequently, due to changing physicochemical features the structure of bacterial communities might fluctuate in different soil environments. The aim of this study was to investigate the bacterial assemblages in the Arctic soil within the area of a birds' colony and in a control sample from a topographically similar location but situated away from the colony's impact area. A high number of OTUs found in both areas indicates a highly complex microbial populations structure. The most abundant phyla in both of the tested samples were: Proteobacteria, Acidobacteria, Actinobacteria, and Chloroflexi, with different proportions in the total share. Despite differences in the physicochemical soil characteristics, the soil microbial community structures at the phylum level were similar to some extent in the two samples. The only share that was significantly higher in the control area when compared to the sample obtained within the birds' colony, belonged to the Actinobacteria phylum. Moreover, when analyzing the class level for each phylum, several differences between the samples were observed. Furthermore, lower proportions of Proteobacteria and Acidobacteria were observed in the soil sample under the influence of the bird's colony, which most probably could be linked to higher nitrogen concentrations in that sample. PMID:27667982

Detecting Dewatering of Peatland Pastures Using Sentinel-1 Satellite Radar Interferometry.

NASA Astrophysics Data System (ADS)

Heuff, F.; Samiei-Esfahany, S.; van Leijen, F. J.; Hanssen, R. F.

2017-12-01

The Netherlands are famous for their polders and the draining of soils to be used as pastures. Around 30% of the pastures are situated on peat soils, mostly in the western part of the Netherlands. Peat is composed of organic materials that oxidize and emit greenhouse gases when exposed to air. Oxidation of peat soils results in volume reduction and subsequent subsidence. As a result, the groundwater level rises relative to the surface. Consequently, the soil needs to be dewatered to keep it sufficiently dry for farming, resulting in more oxidation, and therefore more subsidence. This process is bound to continue until the peat soils have disappeared completely. The societal cost of land subsidence due to peat soils are estimated to be 5200 million euro for urban areas and 200 million euro for peatland pastures, for a period until 2050. Measuring the subsidence is not straightforward, if not impossible, with conventional geodetic means as soft soils make it impossible to install fixed benchmarks for repeated surveying. Also, due to the very fast temporal decorrelation over pastures, conventional InSAR approaches cannot measure a signal due to loss of coherence. Here we deploy a complete set of available SAR data from Sentinel-1, Radarsat-2 and TerraSAR-X to estimate the spatio-temporally varying subsidence signal due to the dewatering of peatland pastures over the western part of the Netherlands. We compute the InSAR coherence matrix for all possible interferometric combination, and compute an equivalent single-master stack to estimate the subsidence. Using terrain and land-use defined coherence estimation areas we optimize the phase estimation over areas severely affected by temporal decorrelation. This leads to a first estimate of deformation signals correlated with ancient shallow soil structures due to fluviatile structures. We use the methodology to investigate the effect of advanced local drainage schemes to slow down the subsidence phenomena.

Testing the Visual Soil Assessment tool on Estonian farm fields

NASA Astrophysics Data System (ADS)

Reintam, Endla; Are, Mihkel; Selge, Are

2017-04-01

Soil quality estimation plays important role in decision making on farm as well on policy level. Sustaining the production ability and good health of the soil the chemical, physical and biological indicators should be taken into account. The system to use soil chemical parameters is usually quite well established in most European counties, including Estonia. However, measuring soil physical properties, such bulk density, porosity, penetration resistance, structural stability ect is time consuming, needs special tools and is highly weather dependent. In that reason these parameters are excluded from controllable quality parameters in policy in Estonia. Within the project "Interactive Soil Quality Assessment in Europe and China for Agricultural Productivity and Environmental Resilience" (iSQAPER) the visual soil assessment (VSA) tool was developed for easy detection of soil quality as well the different soil friendly agricultural management practices (AMP) were detected. The aim of current study was to test the VSA tool on Estonian farm fields under different management practices and compare the results with laboratory measurements. The main focus was set on soil physical parameters. Next to the VSA, the undisturbed soil samples were collected from the depth of 5-10 cm and 25-30 cm. The study revealed that results of a visually assessed soil physical parameters, such a soil structure, soil structural stability, soil porosity, presence of tillage pan, were confirmed by laboratory measurements in most cases. Soil water stable structure measurement on field (on 1 cm2 net in one 1 l box with 4-6 cm air dry clods for 5-10 min) underestimated very well structured soil on grassland and overestimated the structure aggregates stability of compacted soil. The slightly better soil quality was detected under no-tillage compared to ploughed soils. However, the ploughed soil got higher quality points compared with minimum tillage. The slurry application (organic manuring) had controversial impact - it increased the number of earthworms but decreased soil structural stability. Even the manuring with slurry increases organic matter amount in the soil, the compaction due to the use of heavy machinery during the application, especially on wet soil, reduces the positive effect of slurry.

Tundra fire disturbance homogonizes belowground food web structure, function and dynamics

NASA Astrophysics Data System (ADS)

Moore, J. C.; Pressler, Y.; Koltz, A.; Asmus, A.; Simpson, R.

2016-12-01

Tundra fires on Alaska's North Slope are on the rise due to increased lightning strikes since 2000. On July 16, 2007 lightning ignited the Anaktuvuk River fire, burning a 40-by-10 mile swath of tundra about 24 miles north of Toolik Field Station. The fire burned 401 square miles, was visible from space, and released more than 2.3 million tons of carbon into the atmosphere. A large amount of the organic layer of the soil was burned, changing the over all composition of the site and exposing deeper soil horizons. Due to fundamental transitions in soil characteristics and vegetation we hypothesized that the belowground food web community would be affected both in terms of biomass and location within the soil profile. Microbial biomass was reduced with burn severity. In the lower organic horizon there was a significant reduction in fungal biomass but we did not observe this effect in the upper organic soil. We did not observe a significant effect of burn severity on individual group biomass within higher trophic levels. Canonical Discriminant Analysis using the biomass estimates of the functional groups in the food webs found that the webs are becoming increasingly homogenized in the severely burned site compared to the moderately burned and unburned sites. The unburned soils differed significantly from soil at both burn sites; the greatest effects on food web structure were at the lower organic depth, whereas. We modeled the effects of the fire on soil organic matter processing rates and energy flow through the three food webs. The model estimated a decrease in C and N mineralization with fire severity, due in large part to the loss of organic material. While the organic horizon at the unburned site had 12 times greater C and N mineralization than the mineral soils, we observed little to no difference in C and N mineralization between the organic and mineral soil horizons in the moderately and severely burned sites. Our results show that the fire significantly altered the trophic structure of the soil food web, with loss of trophic complexity with increasing fire severity, which correlated strongly with C and N processing and food web stability.

Soil structural quality assessment for soil protection regulation

NASA Astrophysics Data System (ADS)

Johannes, Alice; Boivin, Pascal

2017-04-01

Soil quality assessment is rapidly developing worldwide, though mostly focused on the monitoring of arable land and soil fertility. Soil protection regulations assess soil quality differently, focusing on priority pollutants and threshold values. The soil physical properties are weakly considered, due to lack of consensus and experimental difficulties faced with characterization. Non-disputable, easy to perform and inexpensive methods should be available for environmental regulation to be applied, which is unfortunately not the case. As a consequence, quantitative soil physical protection regulation is not applied, and inexpensive soil physical quality indicators for arable soil management are not available. Overcoming these limitations was the objective of a research project funded by the Swiss federal office for environment (FOEN). The main results and the perspectives of application are given in this presentation. A first step of the research was to characterize soils in a good structural state (reference soils) under different land use. The structural quality was assessed with field expertise and Visual Evaluation of the Soil Structure (VESS), and the physical properties were assessed with Shrinkage analysis. The relationships between the physical properties and the soil constituents were linear and highly determined. They represent the reference properties of the corresponding soils. In a second step, the properties of physically degraded soils were analysed and compared to the reference properties. This allowed defining the most discriminant parameters departing the different structure qualities and their threshold limits. Equivalent properties corresponding to these parameters but inexpensive and easy to determine were defined and tested. More than 90% of the samples were correctly classed with this method, which meets, therefore, the requirements for practical application in regulation. Moreover, result-oriented agri-environmental schemes for soil quality are now proposed to farmers based on these indicators.

Effects and mechanisms of biochar-microbe interactions in soil improvement and pollution remediation: A review.

PubMed

Zhu, Xiaomin; Chen, Baoliang; Zhu, Lizhong; Xing, Baoshan

2017-08-01

Biochars have attracted tremendous attention due to their effects on soil improvement; they enhance carbon storage, soil fertility and quality, and contaminant (organic and heavy metal) immobilization and transformation. These effects could be achieved by modifying soil microbial habitats and (or) directly influencing microbial metabolisms, which together induce changes in microbial activity and microbial community structures. This review links microbial responses, including microbial activity, community structures and soil enzyme activities, with changes in soil properties caused by biochars. In particular, we summarized possible mechanisms that are involved in the effects that biochar-microbe interactions have on soil carbon sequestration and pollution remediation. Special attention has been paid to biochar effects on the formation and protection of soil aggregates, biochar adsorption of contaminants, biochar-mediated transformation of soil contaminants by microorganisms, and biochar-facilitated electron transfer between microbial cells and contaminants and soil organic matter. Certain reactive organic compounds and heavy metals in biochar may induce toxicity to soil microorganisms. Adsorption and hydrolysis of signaling molecules by biochar interrupts microbial interspecific communications, potentially altering soil microbial community structures. Further research is urged to verify the proposed mechanisms involved in biochar-microbiota interactions for soil remediation and improvement. Copyright © 2017 Elsevier Ltd. All rights reserved.

Stream Flow Prediction by Remote Sensing and Genetic Programming

NASA Technical Reports Server (NTRS)

Chang, Ni-Bin

2009-01-01

A genetic programming (GP)-based, nonlinear modeling structure relates soil moisture with synthetic-aperture-radar (SAR) images to present representative soil moisture estimates at the watershed scale. Surface soil moisture measurement is difficult to obtain over a large area due to a variety of soil permeability values and soil textures. Point measurements can be used on a small-scale area, but it is impossible to acquire such information effectively in large-scale watersheds. This model exhibits the capacity to assimilate SAR images and relevant geoenvironmental parameters to measure soil moisture.

Biological Chlorine Cycling in Arctic Peat Soils

NASA Astrophysics Data System (ADS)

Zlamal, J. E.; Raab, T. K.; Lipson, D.

2014-12-01

Soils of the Arctic tundra near Barrow, Alaska are waterlogged and anoxic throughout most of the profile due to underlying permafrost. Microbial communities in these soils are adapted for the dominant anaerobic conditions and are capable of a surprising diversity of metabolic pathways. Anaerobic respiration in this environment warrants further study, particularly in the realm of electron cycling involving chlorine, which preliminary data suggest may play an important role in arctic anaerobic soil respiration. For decades, Cl was rarely studied outside of the context of solvent-contaminated sites due to the widely held belief that it is an inert element. However, Cl has increasingly become recognized as a metabolic player in microbial communities and soil cycling processes. Organic chlorinated compounds (Clorg) can be made by various organisms and used metabolically by others, such as serving as electron acceptors for microbes performing organohalide respiration. Sequencing our arctic soil samples has uncovered multiple genera of microorganisms capable of participating in many Cl-cycling processes including organohalide respiration, chlorinated hydrocarbon degradation, and perchlorate reduction. Metagenomic analysis of these soils has revealed genes for key enzymes of Cl-related metabolic processes such as dehalogenases and haloperoxidases, and close matches to genomes of known organohalide respiring microorganisms from the Dehalococcoides, Dechloromonas, Carboxydothermus, and Anaeromyxobacter genera. A TOX-100 Chlorine Analyzer was used to quantify total Cl in arctic soils, and these data were examined further to separate levels of inorganic Cl compounds and Clorg. Levels of Clorg increased with soil organic matter content, although total Cl levels lack this trend. X-ray Absorption Near Edge Structure (XANES) was used to provide information on the structure of Clorg in arctic soils, showing great diversity with Cl bound to both aromatic and alkyl groups. Incubations were conducted in the laboratory providing arctic soils with Clorg, and measurements taken to assess rates of organohalide respiration show an increase in chloride production due to microbial activity. Investigating these soils with diverse techniques affirms the importance of Cl-cycling in a pristine arctic tundra ecosystem.

Soil macrofauna and litter nutrients in three tropical tree plantations on a disturbed site in Puerto Rico.

Treesearch

Matthew W. Warren; Xiaoming Zou

2002-01-01

Tree plantations are increasingly common in tropical landscapes due to their multiple uses. Plantations vary in structure and composition, and these variations may alter soil fauna communities. Recent studies have demonstrated the important role of soil fauna in the regulation of plant litter decomposition in the tropics. However, little is known about how plantation...

Freeze-Thaw Cycles Effects on Soil Compaction in a Clay Loam

NASA Astrophysics Data System (ADS)

Jabro, J.; Evans, R.; Iversen, W.

2012-04-01

Inappropriate soil management practices and heavier farm machinery and equipment have led to an increase in soil compaction in the last two decades prompting increased global concern regarding the impact of soil compaction on crop production and soil quality in modern mechanized agriculture. A 3-yr comprehensive study was established to evaluate the dynamic of freeze-thaw cycles on soil compaction in a clay loam soil. Plots of frozen soils were compared with plots where soils were prevented from freezing with electrically heated blankets commonly used on concrete. Results showed that frequent freeze-thaw cycles over the winter alleviated a majority of soil compaction at the 0 - 20 cm depth. Soil penetration resistance in compacted soils was reduced by 73 and 68% over the winter at the 0 - 10 and 10 - 20 cm depths, respectively, due to dynamic effects of freeze-thaw cycles on soil structure and particles configuration. In unfrozen compacted soils, the penetration resistance was also reduced by 50 and 60% over winter at the 0 - 10 and 10 - 20 cm depths, respectively, due to the biology of soil, microbial activity, and disruptive effects of shrink-swell cycles. These results have demonstrated of how repeated freeze-thaw cycles can alleviate soil compaction, alter soil physical quality and create optimal soil conditions required for profitable growth of agricultural crops. The results from this study will save growers considerable time, money and energy currently required to alleviate soil compaction using other methods such as sub-soiling and deep tillage. We believe that Mother Nature provides ways to reverse soil compaction and improve soil structure and aggregation through the dynamic of freeze-thaw cycles that soils in Montana and other parts of the country go through each year. We concluded that the Mother Nature is the most effective and cheapest way to alleviate soil compaction.

Soil physical land degradation processes

NASA Astrophysics Data System (ADS)

Horn, Rainer

2017-04-01

According to the European Soil Framework Directive (2006) soil compaction is besides water and wind erosion one of the main physical reasons and threats of soil degradation. It is estimated, that 32% of the subsoils in Europe are highly degraded and 18% moderately vulnerable to compaction. The problem is not limited to crop land or forest areas (especially because of non-site adjusted harvesting machines) but is also prevalent in rangelands and grassland, and even in so called natural non-disturbed systems. The main reasons for an intense increase in compacted agricultural or forested regions are the still increasing masses of the machines as well the increased frequency of wheeling under non favorable site conditions. Shear and vibration induced soil deformation enhances the deterioration of soil properties especially if the soil water content is very high and the internal soil strength very low. The same is true for animal trampling in combination with overgrazing of moist to wet pastures which subsequently causes a denser (i.e. reduced proportion of coarse pores with smaller continuity) but still structured soil horizons and will finally end in a compacted platy structure. In combination with high water content and shearing due to trampling therefore results in a complete muddy homogeneous soil with no structure at all. (Krümmelbein et al. 2013) Site managements of arable, forestry or horticulture soils requires a sufficiently rigid pore system which guarantees water, gas and heat exchange, nutrient transport and adsorption as well as an optimal rootability in order to avoid subsoil compaction. Such pore system also guarantees a sufficient microbial activity and composition in order to also decompose the plant etc. debris. It is therefore essential that well structured horizons dominate in soils with at best subangular blocky structure or in the top A- horizons a crumbly structure due to biological activity. In contrast defines the formation of a platy structure down to deeper depth and/or in combination with the deterioration of a continuous pore system an intensely degraded soil. A dominating anisotropy of pore functions causes a lateral soil and water movement. Doerner and Horn (2006), documented the increasing effect of stress and shear affected horizontal anisotropy on the hydraulic and gas permeability which coincides with a retarded gas exchange and an increased proportion of e.g. CO2 or even CH4 in soil pores and hinders the normal population growth. If the internal soil strength is exceeded the microbial composition and activity is converted to anoxia and even results in the emission of CH4 (Haas et al. 2016). Furthermore, the accessibility of nutrient adsorption places as well as connection between the pores within the compacted soils is decreased and results in a retarded ion mass flow and diffusion within the plats and /or in between the soil horizons. How to overcome these negative effects and how to deal with soils adequately according to their internal strength will be presented in the lecture - we need to improve the food production at an preserved land area for growing population. Literature Haas,C., Holthusen,D., Mordhorst,A., Lipiec,J., Horn, R. 2016. Elastic and plastic soil deformation and its influence on emission of greenhouse gases. Int. Agrophys., 30, 173-184 Krümmelbein, J., R.Horn 2013: Cycle of Soil Structure. Soil Degradation 183-198, Advances in Geoecology, 42, Catena Verlag, ISBN: 978-3-923381-59-3

Crossing Phenomena in Overhead Line Equipment (OHLE) Structure in 3D Space Considering Soil-Structure Interaction

NASA Astrophysics Data System (ADS)

Ngamkhanong, Chayut; Kaewunruen, Sakdirat; Baniotopoulos, Charalampos; Papaelias, Mayorkinos

2017-10-01

Nowadays, the electric train becomes one of the efficient railway systems that are lighter, cleaner, quieter, cheaper and faster than a conventional train. Overhead line equipment (OHLE), which supplies electric power to the trains, is designed on the principle of overhead wires placed over the railway track. The OHLE is supported by mast structure which located at the lineside along the track. Normally, mast structure is a steel column or truss structure which supports the overhead wire carrying the power. Due to the running train and severe periodic force, such as an earthquake, in surrounding area may cause damage to the OHLE structure especially mast structure which leads to the failure of the electrical system. The mast structure needs to be discussed in order to resist the random forces. Due to the vibration effect, the natural frequencies of the structure are necessary. This is because when the external applied force occurs within a range of frequency of the structure, resonance effect can be expected which lead to the large oscillations and deflections. The natural frequency of a system is dependent only on the stiffness of the structure and the mass which participates with the structure, including self-weight. The modal analysis is used in order to calculate the mode shapes and natural frequencies of the mast structure during free vibration. A mast structure with varying rotational soil stiffness is used to observe the influence of soil-structure action. It is common to use finite element analysis to perform a modal analysis. This paper presents the fundamental mode shapes, natural frequencies and crossing phenomena of three-dimensional mast structure considering soil-structure interaction. The sensitivity of mode shapes to the variation of soil-structure interaction is discussed. The outcome of this study will improve the understanding of the fundamental dynamic behaviour of the mast structure which supports the OHLE. Moreover, this study will be a recommendation for the structural engineer to associate with the behaviour of mast structure during vibration.

Biochar in co-contaminated soil manipulates arsenic solubility and microbiological community structure, and promotes organochlorine degradation.

PubMed

Gregory, Samuel J; Anderson, Christopher W N; Camps-Arbestain, Marta; Biggs, Patrick J; Ganley, Austen R D; O'Sullivan, Justin M; McManus, Michael T

2015-01-01

We examined the effect of biochar on the water-soluble arsenic (As) concentration and the extent of organochlorine degradation in a co-contaminated historic sheep-dip soil during a 180-d glasshouse incubation experiment. Soil microbial activity, bacterial community and structure diversity were also investigated. Biochar made from willow feedstock (Salix sp) was pyrolysed at 350 or 550°C and added to soil at rates of 10 g kg-1 and 20 g kg-1 (representing 30 t ha-1 and 60 t ha-1). The isomers of hexachlorocyclohexane (HCH) alpha-HCH and gamma-HCH (lindane), underwent 10-fold and 4-fold reductions in concentration as a function of biochar treatment. Biochar also resulted in a significant reduction in soil DDT levels (P < 0.01), and increased the DDE:DDT ratio. Soil microbial activity was significantly increased (P < 0.01) under all biochar treatments after 60 days of treatment compared to the control. 16S amplicon sequencing revealed that biochar-amended soil contained more members of the Chryseobacterium, Flavobacterium, Dyadobacter and Pseudomonadaceae which are known bioremediators of hydrocarbons. We hypothesise that a recorded short-term reduction in the soluble As concentration due to biochar amendment allowed native soil microbial communities to overcome As-related stress. We propose that increased microbiological activity (dehydrogenase activity) due to biochar amendment was responsible for enhanced degradation of organochlorines in the soil. Biochar therefore partially overcame the co-contaminant effect of As, allowing for enhanced natural attenuation of organochlorines in soil.

Vibration control of a cluster of buildings through the Vibrating Barrier

NASA Astrophysics Data System (ADS)

Tombari, A.; Garcia Espinosa, M.; Alexander, N. A.; Cacciola, P.

2018-02-01

A novel device, called Vibrating Barrier (ViBa), that aims to reduce the vibrations of adjacent structures subjected to ground motion waves has been recently proposed. The ViBa is a structure buried in the soil and detached from surrounding buildings that is able to absorb a significant portion of the dynamic energy arising from the ground motion. The working principle exploits the dynamic interaction among vibrating structures due to the propagation of waves through the soil, namely the structure-soil-structure interaction. In this paper the efficiency of the ViBa is investigated to control the vibrations of a cluster of buildings. To this aim, a discrete model of structures-site interaction involving multiple buildings and the ViBa is developed where the effects of the soil on the structures, i.e. the soil-structure interaction (SSI), the structure-soil-structure interaction (SSSI) as well as the ViBa-soil-structures interaction are taken into account by means of linear elastic springs. Closed-form solutions are derived to design the ViBa in the case of harmonic excitation from the analysis of the discrete model. Advanced finite element numerical simulations are performed in order to assess the efficiency of the ViBa for protecting more than a single building. Parametric studies are also conducted to identify beneficial/adverse effects in the use of the proposed vibration control strategy to protect cluster of buildings. Finally, experimental shake table tests are performed to a prototype of a cluster of two buildings protected by the ViBa device for validating the proposed numerical models.

Modeling the Dynamics of Soil Structure and Water in Agricultural Soil

NASA Astrophysics Data System (ADS)

Weller, U.; Lang, B.; Rabot, E.; Stössel, B.; Urbanski, L.; Vogel, H. J.; Wiesmeier, M.; Wollschlaeger, U.

2017-12-01

The impact of agricultural management on soil functions is manifold and severe. It has both positive and adverse influence. Our goal is to develop model tools quantifying the agricultural impact on soil functions based on a mechanistic understanding of soil processes to support farmers and decision makers. The modeling approach is based on defining relevant soil components, i.e. soil matrix, macropores, organisms, roots and organic matter. They interact and form the soil's macroscopic properties and functions including water and gas dynamics, and biochemical cycles. Based on existing literature information we derive functional interaction processes and combine them in a network of dynamic soil components. In agricultural soils, a major issue is linked to changes in soil structure and their influence on water dynamics. Compaction processes are well studied in literature, but for the resilience due to root growth and activity of soil organisms the information is scarcer. We implement structural dynamics into soil water and gas simulations using a lumped model that is both coarse enough to allow extensive model runs while still preserving some important, yet rarely modeled phenomenons like preferential flow, hysteretic and dynamic behavior. For simulating water dynamics, at each depth, the model assumes water at different binding energies depending on soil structure, i.e. the pore size distribution. Non-equilibrium is postulated, meaning that free water may occur even if the soil is not fully saturated. All energy levels are interconnected allowing water to move, both within a spatial node, and between neighboring nodes (adding gravity). Structure dynamics alters the capacity of this water compartments, and the conductance of its connections. Connections are switched on and off depending on whether their sources contain water or their targets have free capacity. This leads to piecewise linear system behavior that allows fast calculation for extended time steps. Based on this concept, the dynamics of soil structure can be directly linked to soil water dynamics as a main driver for other soil processes. Further steps will include integration of temperature and solute leaching as well as defining the feedback of the water regime on the structure forming processes.

Response of rhizosphere microbial community structure and diversity to heavy metal co-pollution in arable soil.

PubMed

Deng, Linjing; Zeng, Guangming; Fan, Changzheng; Lu, Lunhui; Chen, Xunfeng; Chen, Ming; Wu, Haipeng; He, Xiaoxiao; He, Yan

2015-10-01

Due to the emerging environmental issues related to heavy metals, concern about the soil quality of farming lands near manufacturing district is increasing. Investigating the function of soil microorganisms exposed to long-term heavy metal contamination is meaningful and important for agricultural soil utilization. This article studied the potential influence of several heavy metals on microbial biomass, activity, abundance, and community composition in arable soil near industrial estate in Zhuzhou, Hunan province, China. The results showed that soil organic contents (SOC) were significantly positive correlated with heavy metals, whereas dehydrogenase activity (DHA) was greatly depressed by the heavy metal stress. Negative correlation was found between heavy metals and basal soil respiration (BSR), and no correlation was found between heavy metals and microbial biomass content (MBC). The quantitative PCR (QPCR) and polymerase chain reaction-denaturing gradient gel electrophoresis (PCR-DGGE) analysis could suggest that heavy metal pollution has significantly decreased abundance of bacteria and fungi and also changed their community structure. The results could contribute to evaluate heavy metal pollution level in soil. By combining different environmental parameters, it would promote the better understanding of heavy metal effect on the size, structure, and activity of microbial community in arable soil.

Distinct Soil Microbial Communities in habitats of differing soil water balance on the Tibetan Plateau

PubMed Central

Li, Yuntao; Adams, Jonathan; Shi, Yu; Wang, Hao; He, Jin-Sheng; Chu, Haiyan

2017-01-01

Global change may be a severe threat to natural and agricultural systems, partly through its effects in altering soil biota and processes, due to changes in water balance. We studied the potential influence of changing soil water balance on soil biota by comparing existing sites along a natural water balance gradient in the Qinghai-Tibetan Plateau. In this study, the community structure of bacteria, archaea and eukaryotes differed between the different soil water conditions. Soil moisture was the strongest predictor of bacterial and eukaryotic community structure, whereas C/N ratio was the key factor predicting variation in the archaeal community. Bacterial and eukaryotic diversity was quite stable among different soil water availability, but archaeal diversity was dramatically different between the habitats. The auxotype of methanogens also varied significantly among different habitats. The co-varying soil properties among habitats shaped the community structure of soil microbes, with archaea being particularly sensitive in terms of community composition, diversity and functional groups. Bacterial and archaeal phylogenetic community turnover was mainly driven by deterministic processes while stochastic processes had stronger effects on eukaryotic phylogenetic community turnover. Our work provides insight into microbial community, functional group and phylogenetic turnover under different soil conditions in low-latitude alpine ecosystem. PMID:28401921

Distinct Soil Microbial Communities in habitats of differing soil water balance on the Tibetan Plateau

NASA Astrophysics Data System (ADS)

Li, Yuntao; Adams, Jonathan; Shi, Yu; Wang, Hao; He, Jin-Sheng; Chu, Haiyan

2017-04-01

Global change may be a severe threat to natural and agricultural systems, partly through its effects in altering soil biota and processes, due to changes in water balance. We studied the potential influence of changing soil water balance on soil biota by comparing existing sites along a natural water balance gradient in the Qinghai-Tibetan Plateau. In this study, the community structure of bacteria, archaea and eukaryotes differed between the different soil water conditions. Soil moisture was the strongest predictor of bacterial and eukaryotic community structure, whereas C/N ratio was the key factor predicting variation in the archaeal community. Bacterial and eukaryotic diversity was quite stable among different soil water availability, but archaeal diversity was dramatically different between the habitats. The auxotype of methanogens also varied significantly among different habitats. The co-varying soil properties among habitats shaped the community structure of soil microbes, with archaea being particularly sensitive in terms of community composition, diversity and functional groups. Bacterial and archaeal phylogenetic community turnover was mainly driven by deterministic processes while stochastic processes had stronger effects on eukaryotic phylogenetic community turnover. Our work provides insight into microbial community, functional group and phylogenetic turnover under different soil conditions in low-latitude alpine ecosystem.

Urbanization Effects on the Vertical Distribution of Soil Microbial Communities and Soil C Storage across Edge-to-Interior Urban Forest Gradients

NASA Astrophysics Data System (ADS)

Rosier, C. L.; Van Stan, J. T., II; Trammell, T. L.

2017-12-01

Urbanization alters environmental conditions such as temperature, moisture, carbon (C) and nitrogen (N) deposition affecting critical soil processes (e.g., C storage). Urban soils experience elevated N deposition (e.g., transportation, industry) and decreased soil moisture via urban heat island that can subsequently alter soil microbial community structure and activity. However, there is a critical gap in understanding how increased temperatures and pollutant deposition influences soil microbial community structure and soil C/N cycling in urban forests. Furthermore, canopy structural differences between individual tree species is a potentially important mechanism facilitating the deposition of pollutants to the soil. The overarching goal of this study is to investigate the influence of urbanization and tree species structural differences on the bacterial and fungal community and C and N content of soils experiencing a gradient of urbanization pressures (i.e., forest edge to interior; 150-m). Soil cores (1-m depth) were collected near the stem (< 0.5 meter) of two tree species with contrasting canopy and bark structure (Fagus grandifolia, vs. Liriodendron tulipifera), and evaluated for soil microbial structure via metagenomic analysis and soil C/N content. We hypothesize that soil moisture constraints coupled with increases in recalcitrant C will decrease gram negative bacteria (i.e., dependent on labile C) while increasing saprophytic fungal community abundance (i.e., specialist consuming recalcitrant C) within both surface and subsurface soils experiencing the greatest urban pressure (i.e., forest edge). We further expect trees located on the edge of forest fragments will maintain greater surface soil (< 20 cm) C concentrations due to decreased soil moisture constraining microbial activity (e.g., slower decay), and increased capture of recalcitrant C stocks from industrial/vehicle emission sources (e.g., black C). Our initial results support our hypotheses that urbanization alters soil microbial community composition via reduced soil moisture and carbon storage potential via deposition gradients. Further analyses will answer important questions regarding how individual tree species alters urban soil C storage, N retention, and microbial dynamics.

Ground Penetrating Radar For Estimating Root Biomass Through Empirical Analysis

NASA Astrophysics Data System (ADS)

Wolfe, M.; Dobreva, I. D.; Delgado, A.; Hays, D. B.; Bishop, M. P.; Huo, D.; Wang, X.; Teare, B. L.; Burris, S.

2017-12-01

Variability in soil carbon storage due to agricultural practices is an important component of the carbon cycle. Enhancing soil organic content is a means for restoring degraded soils and for improving soil quality, but also for carbon sequestration. In particular, accurate estimates of soil organic content are essential for quantifying carbon sequestration capabilities of agricultural systems. This project aims to advance the technological and analytical capabilities of Ground Penetrating Radar (GPR) for diagnoses of the soil carbon storage occurring due to the perennial grasses which are often utilized as biofuels. A new GPR processing workflow applied via a prototype software was tested on simulated GPR data of roots with different densities and depths to determine the sensitivity and capability of this technology to quantify these parameters. Field experiments were also conducted in long-term trials of different genotypes of perennial grasses over field sites in Texas to determine the application in authentic environments. GPR scans and soil samples were collected, and root dry biomass was obtained. Evaluation of pre-processing techniques was conducted to provide optimal resolution for assessment. The novel backscatter spatial structure workflow was implemented, and empirical relationships between root biomass and GPR derived observations were developed. Preliminary results suggest that the backscatter spatial structure changes in the presence of high density root biomass conditions, and these variations are indicative of root zone depth and density. Our results illustrate promising applications in root detection, and therefore, the soil organic content accumulation that is pertinent to a healthy soil system.

Distance-dependent varieties of microbial community structure and metabolic functions in the rhizosphere of Sedum alfredii Hance during phytoextraction of a cadmium-contaminated soil.

PubMed

Yang, Wenhao; Zhang, Taoxiang; Lin, Sen; Ni, Wuzhong

2017-06-01

The recovery of microbial community and activities is crucial to the remediation of contaminated soils. Distance-dependent variations of microbial community composition and metabolic characteristics in the rhizospheric soil of hyperaccumulator during phytoextraction are poorly understood. A 12-month phytoextraction experiment with Sedum alfredii in a Cd-contaminated soil was conducted. A pre-stratified rhizobox was used for separating sub-layer rhizospheric (0-2, 2-4, 4-6, 6-8, 8-10 mm from the root mat)/bulk soils. Soil microbial structure and function were analyzed by phospholipid fatty acid (PLFA) and MicroResp™ methods. The concentrations of total and specified PLFA biomarkers and the utilization rates for the 14 substrates (organic carbon) in the 0-2-mm sub-layer rhizospheric soil were significantly increased, as well as decreased with the increase in the distance from the root mat. Microbial structure measured by the ratios of different groups of PLFAs such as fungal/bacterial, monounsaturated/saturated, ratios of Gram-positive to Gram-negative (GP/GN) bacterial, and cyclopropyl/monoenoic precursors and 19:0 cyclo/18:1ω7c were significantly changed in the 0-2-mm soil. The PLFA contents and substrate utilization rates were negatively correlated with pH and total, acid-soluble, and reducible fractions of Cd, while positively correlated with labile carbon. The dynamics of microbial community were likely due to root exudates and Cd uptake by S. alfredii. This study revealed the stimulations and gradient changes of rhizosphere microbial community through phytoextraction, as reduced Cd concentration, pH, and increased labile carbons are due to the microbial community responses.

Vegetation-Associated Impacts on Arctic Tundra Bacterial and Microeukaryotic Communities

PubMed Central

Shi, Yu; Xiang, Xingjia; Shen, Congcong; Neufeld, Josh D.; Walker, Virginia K.

2014-01-01

The Arctic is experiencing rapid vegetation changes, such as shrub and tree line expansion, due to climate warming, as well as increased wetland variability due to hydrological changes associated with permafrost thawing. These changes are of global concern because changes in vegetation may increase tundra soil biogeochemical processes that would significantly enhance atmospheric CO2 concentrations. Predicting the latter will at least partly depend on knowing the structure, functional activities, and distributions of soil microbes among the vegetation types across Arctic landscapes. Here we investigated the bacterial and microeukaryotic community structures in soils from the four principal low Arctic tundra vegetation types: wet sedge, birch hummock, tall birch, and dry heath. Sequencing of rRNA gene fragments indicated that the wet sedge and tall birch communities differed significantly from each other and from those associated with the other two dominant vegetation types. Distinct microbial communities were associated with soil pH, ammonium concentration, carbon/nitrogen (C/N) ratio, and moisture content. In soils with similar moisture contents and pHs (excluding wet sedge), bacterial, fungal, and total eukaryotic communities were correlated with the ammonium concentration, dissolved organic nitrogen (DON) content, and C/N ratio. Operational taxonomic unit (OTU) richness, Faith's phylogenetic diversity, and the Shannon species-level index (H′) were generally lower in the tall birch soil than in soil from the other vegetation types, with pH being strongly correlated with bacterial richness and Faith's phylogenetic diversity. Together, these results suggest that Arctic soil feedback responses to climate change will be vegetation specific not just because of distinctive substrates and environmental characteristics but also, potentially, because of inherent differences in microbial community structure. PMID:25362064

Vegetation-associated impacts on arctic tundra bacterial and microeukaryotic communities.

PubMed

Shi, Yu; Xiang, Xingjia; Shen, Congcong; Chu, Haiyan; Neufeld, Josh D; Walker, Virginia K; Grogan, Paul

2015-01-01

The Arctic is experiencing rapid vegetation changes, such as shrub and tree line expansion, due to climate warming, as well as increased wetland variability due to hydrological changes associated with permafrost thawing. These changes are of global concern because changes in vegetation may increase tundra soil biogeochemical processes that would significantly enhance atmospheric CO2 concentrations. Predicting the latter will at least partly depend on knowing the structure, functional activities, and distributions of soil microbes among the vegetation types across Arctic landscapes. Here we investigated the bacterial and microeukaryotic community structures in soils from the four principal low Arctic tundra vegetation types: wet sedge, birch hummock, tall birch, and dry heath. Sequencing of rRNA gene fragments indicated that the wet sedge and tall birch communities differed significantly from each other and from those associated with the other two dominant vegetation types. Distinct microbial communities were associated with soil pH, ammonium concentration, carbon/nitrogen (C/N) ratio, and moisture content. In soils with similar moisture contents and pHs (excluding wet sedge), bacterial, fungal, and total eukaryotic communities were correlated with the ammonium concentration, dissolved organic nitrogen (DON) content, and C/N ratio. Operational taxonomic unit (OTU) richness, Faith's phylogenetic diversity, and the Shannon species-level index (H') were generally lower in the tall birch soil than in soil from the other vegetation types, with pH being strongly correlated with bacterial richness and Faith's phylogenetic diversity. Together, these results suggest that Arctic soil feedback responses to climate change will be vegetation specific not just because of distinctive substrates and environmental characteristics but also, potentially, because of inherent differences in microbial community structure. Copyright © 2015, American Society for Microbiology. All Rights Reserved.

Impact of monovalent cations on soil structure. Part II. Results of two Swiss soils

NASA Astrophysics Data System (ADS)

Farahani, Elham; Emami, Hojat; Keller, Thomas

2018-01-01

In this study, we investigated the impact of adding solutions with different potassium and sodium concentrations on dispersible clay, water retention characteristics, air permeability, and soil shrinkage behaviour using two agricultural soils from Switzerland with different clay content but similar organic carbon to clay ratio. Three different solutions (including only Na, only K, and the combination of both) were added to soil samples at three different cation ratio of soil structural stability levels, and the soil samples were incubated for one month. Our findings showed that the amount of readily dispersible clay increased with increasing Na concentrations and with increasing cation ratio of soil structural stability. The treatment with the maximum Na concentration resulted in the highest water retention and in the lowest shrinkage capacity. This was was associated with high amounts of readily dispersible clay. Air permeability generally increased during incubation due to moderate wetting and drying cycles, but the increase was negatively correlated with readily dispersible clay. Readily dispersible clay decreased with increasing K, while readily dispersible clay increased with increasing K in Iranian soil (Part I of our study). This can be attributed to the different clay mineralogy of the studied soils (muscovite in Part I and illite in Part II).

A long-term soil structure observatory for post-compaction soil structure evolution: design and initial soil structure recovery observations

NASA Astrophysics Data System (ADS)

Keller, Thomas; Colombi, Tino; Ruiz, Siul; Grahm, Lina; Reiser, René; Rek, Jan; Oberholzer, Hans-Rudolf; Schymanski, Stanislaus; Walter, Achim; Or, Dani

2016-04-01

Soil compaction due to agricultural vehicular traffic alters the geometrical arrangement of soil constituents, thereby modifying mechanical properties and pore spaces that affect a range of soil hydro-ecological functions. The ecological and economic costs of soil compaction are dependent on the immediate impact on soil functions during the compaction event, and a function of the recovery time. In contrast to a wealth of soil compaction information, mechanisms and rates of soil structure recovery remain largely unknown. A long-term (>10-yr) soil structure observatory (SSO) was established in 2014 on a loamy soil in Zurich, Switzerland, to quantify rates and mechanisms of structure recovery of compacted arable soil under different post-compaction management treatments. We implemented three initial compaction treatments (using a two-axle agricultural vehicle with 8 Mg wheel load): compaction of the entire plot area (i.e. track-by-track), compaction in wheel tracks, and no compaction. After compaction, we implemented four post-compaction soil management systems: bare soil (BS), permanent grass (PG), crop rotation without mechanical loosening (NT), and crop rotation under conventional tillage (CT). BS and PG provide insights into uninterrupted natural processes of soil structure regeneration under reduced (BS) and normal biological activity (PG). The two cropping systems (NT and CT) enable insights into soil structure recovery under common agricultural practices with minimal (NT) and conventional mechanical soil disturbance (CT). Observations include periodic sampling and measurements of soil physical properties, earthworm abundance, crop measures, electrical resistivity and ground penetrating radar imaging, and continuous monitoring of state variables - soil moisture, temperature, CO2 and O2 concentrations, redox potential and oxygen diffusion rates - for which a network of sensors was installed at various depths (0-1 m). Initial compaction increased soil bulk density to about half a metre, decreased gas and water transport functions (air permeability, gas diffusivity, saturated hydraulic conductivity), and increased mechanical impedance. Water infiltration at the soil surface was initially reduced by three orders of magnitude, but significantly recovered within a year. However, within the soil profile, recovery of transport properties is much smaller. Air permeability tended to recover more than gas diffusivity, suggesting that initial post-compaction recovery is initiated by new macropores (e.g. biopores). Tillage recovered topsoil bulk density but not topsoil transport functions. Compaction changed grass species composition in PG, and significantly reduced grass biomass in PG and crop yields in NT and CT.

Coal mining activities change plant community structure due to air pollution and soil degradation.

PubMed

Pandey, Bhanu; Agrawal, Madhoolika; Singh, Siddharth

2014-10-01

The aim of this study was to investigate the effects of coal mining activities on the community structures of woody and herbaceous plants. The response of individual plants of community to defilement caused by coal mining was also assessed. Air monitoring, soil physico-chemical and phytosociological analyses were carried around Jharia coalfield (JCF) and Raniganj coalfield. The importance value index of sensitive species minified and those of tolerant species enhanced with increasing pollution load and altered soil quality around coal mining areas. Although the species richness of woody and herbaceous plants decreased with higher pollution load, a large number of species acclimatized to the stress caused by the coal mining activities. Woody plant community at JCF was more affected by coal mining than herbaceous community. Canonical correspondence analysis revealed that structure of herbaceous community was mainly driven by soil total organic carbon, soil nitrogen, whereas woody layer community was influenced by sulphur dioxide in ambient air, soil sulphate and soil phosphorus. The changes in species diversity observed at mining areas indicated an increase in the proportion of resistant herbs and grasses showing a tendency towards a definite selection strategy of ecosystem in response to air pollution and altered soil characteristics.

Influence of soil structure on nutrient cycling using microfluidic techniques

NASA Astrophysics Data System (ADS)

Arellano Caicedo, Carlos; Aleklett, Kristin; Ohlsson, Pelle; Hammer, Edith

2017-04-01

The rising of atmospheric CO2 levels and its effects on global warming make it necessary to understand the elements that regulate such levels and furthermore try to slow down the CO2 accumulation in the atmosphere. The exchange of carbon between soil and atmosphere plays a significant role in the atmospheric carbon budget. Soil organisms deposit organic compounds on and in soil aggregates, either as exudates or dead remains. Much of this dead organic material is quickly recycled, but a portion, however, will stay in the soil for long term. Evidence suggests that micro-scale biogeochemical interactions could play a highly significant role in degradation or persistence of organic matter in soils, thus, soil physical structure might play a decisive role in preventing accessibility of nutrients to microorganisms. For studying effects of spatial microstructure on soil nutrient cycles, we have constructed artificial habitats for microbes that simulate soil structures. Microfluidic, so called Lab-on-a-chip technologies, are one of the tools used to achieve our purpose. Such micro-habitats consist of pillar structures of difference density and surface area, tunnels with increasing depth, and mazes of increasing complexity to simulate different stages of soil aggregation. Using microscopy and analytical chemistry, we can follow the growth of microorganisms inoculated into the "soil chip" as well as the chemical degradation of organic matter compounds provided as nutrient source. In this way, we want to be able to predict how soil structure influences soil microbial activity leading to different effects on the carbon cycle. Our first results of a chip inoculated with natural soil showed a succession of organisms colonizing channels leading to dead-end arenas, starting with a high presence of bacteria inside the chip during the first days. Fungal hyphae growth gradually inside the channels until it finally occupied the big majority of the spaces isolating bacteria which dramatically decreased in number. The structure inside the soil chip changes dynamically due to the creation of biofilms. Such changes alter the spatial distribution inside the chip gradually, to the point of getting significantly different from the original structures. Fungal hyphae, bacterial biofilms, and microbial necro mass accumulation where the components altering the chip structure. These findings suggest that a considerable part of the soil structure is microbial biomass. Using Lab-on-a-chip techniques leads to the creation of a much more realistic soil and ecosystem model, resembling spatial and chemical complexity in real soil structures at a micrometer scale, the scale relevant for soil organisms. Understanding small-scale processes in the soils is crucial to predict carbon and nutrient cycling, and to enable us to give recommendations for soil management in agriculture, horticulture and nature conservation. If parameterization of soil structure as a central determinant for carbon sequestration is possible, it will allow strong argumentation for management practices that conserve and foster soil structure, such as low-tillage, support of mycorrhizal fungi, and reduction of heavy machinery usage.

Physical-chemical and microbiological changes in Cerrado Soil under differing sugarcane harvest management systems

PubMed Central

2012-01-01

Background Sugarcane cultivation plays an important role in Brazilian economy, and it is expanding fast, mainly due to the increasing demand for ethanol production. In order to understand the impact of sugarcane cultivation and management, we studied sugarcane under different management regimes (pre-harvest burn and mechanical, unburnt harvest, or green cane), next to a control treatment with native vegetation. The soil bacterial community structure (including an evaluation of the diversity of the ammonia oxidizing (amoA) and denitrifying (nirK) genes), greenhouse gas flow and several soil physicochemical properties were evaluated. Results Our results indicate that sugarcane cultivation in this region resulted in changes in several soil properties. Moreover, such changes are reflected in the soil microbiota. No significant influence of soil management on greenhouse gas fluxes was found. However, we did find a relationship between the biological changes and the dynamics of soil nutrients. In particular, the burnt cane and green cane treatments had distinct modifications. There were significant differences in the structure of the total bacterial, the ammonia oxidizing and the denitrifying bacterial communities, being that these groups responded differently to the changes in the soil. A combination of physical and chemical factors was correlated to the changes in the structures of the total bacterial communities of the soil. The changes in the structures of the functional groups follow a different pattern than the physicochemical variables. The latter might indicate a strong influence of interactions among different bacterial groups in the N cycle, emphasizing the importance of biological factors in the structuring of these communities. Conclusion Sugarcane land use significantly impacted the structure of total selected soil bacterial communities and ammonia oxidizing and denitrifier gene diversities in a Cerrado field site in Central Brazil. A high impact of land use was observed in soil under the common burnt cane management. The green cane soil also presented different profiles compared to the control soil, but to at a lesser degree. PMID:22873209

Biochar in Co-Contaminated Soil Manipulates Arsenic Solubility and Microbiological Community Structure, and Promotes Organochlorine Degradation

PubMed Central

Gregory, Samuel J.; Anderson, Christopher W. N.; Camps-Arbestain, Marta; Biggs, Patrick J.; Ganley, Austen R. D.; O’Sullivan, Justin M.; McManus, Michael T.

2015-01-01

We examined the effect of biochar on the water-soluble arsenic (As) concentration and the extent of organochlorine degradation in a co-contaminated historic sheep-dip soil during a 180-d glasshouse incubation experiment. Soil microbial activity, bacterial community and structure diversity were also investigated. Biochar made from willow feedstock (Salix sp) was pyrolysed at 350 or 550°C and added to soil at rates of 10 g kg-1 and 20 g kg-1 (representing 30 t ha-1 and 60 t ha-1). The isomers of hexachlorocyclohexane (HCH) alpha-HCH and gamma-HCH (lindane), underwent 10-fold and 4-fold reductions in concentration as a function of biochar treatment. Biochar also resulted in a significant reduction in soil DDT levels (P < 0.01), and increased the DDE:DDT ratio. Soil microbial activity was significantly increased (P < 0.01) under all biochar treatments after 60 days of treatment compared to the control. 16S amplicon sequencing revealed that biochar-amended soil contained more members of the Chryseobacterium, Flavobacterium, Dyadobacter and Pseudomonadaceae which are known bioremediators of hydrocarbons. We hypothesise that a recorded short-term reduction in the soluble As concentration due to biochar amendment allowed native soil microbial communities to overcome As-related stress. We propose that increased microbiological activity (dehydrogenase activity) due to biochar amendment was responsible for enhanced degradation of organochlorines in the soil. Biochar therefore partially overcame the co-contaminant effect of As, allowing for enhanced natural attenuation of organochlorines in soil. PMID:25923541

Soil phosphorus depletion and shifts in plant communities change bacterial community structure in a long-term grassland management trial.

PubMed

Adair, Karen L; Wratten, Steve; Lear, Gavin

2013-06-01

Agricultural systems rely on healthy soils and their sustainability requires understanding the long-term impacts of agricultural practices on soils, including microbial communities. We examined the impact of 17 years of land management on soil bacterial communities in a New Zealand randomized-block pasture trial. Significant variation in bacterial community structure related to mowing and plant biomass removal, while nitrogen fertilizer had no effect. Changes in soil chemistry and legume abundance described 52% of the observed variation in the bacterial community structure. Legumes (Trifolium species) were absent in unmanaged plots but increased in abundance with management intensity; 11% of the variation in soil bacterial community structure was attributed to this shift in the plant community. Olsen P explained 10% of the observed heterogeneity, which is likely due to persistent biomass removal resulting in P limitation; Olsen P was significantly lower in plots with biomass removed (14 mg kg(-1) ± 1.3SE) compared with plots that were not mown, or where biomass was left after mowing (32 mg kg(-1) ± 1.6SE). Our results suggest that removal of plant biomass and associated phosphorus, as well as shifts in the plant community, have greater long-term impacts on soil bacterial community structure than application of nitrogen fertilizers. © 2013 John Wiley & Sons Ltd and Society for Applied Microbiology.

Effects of Rainfall-Induced Topsoil Structure Changes on Root-Zone Moisture Regime during the Dry Period

NASA Astrophysics Data System (ADS)

Wang, Feng; Chen, Jiazhou; Lin, Lirong

2018-01-01

Rainfall erosion and subsequent intermittent drought are serious barriers for agricultural production in the subtropical red soil region of China. Although it is widely recognized that rainfall-induced soil structure degradation reduced soil water storage and water-holding capacity, the effects of variation of the rainfall-induced topsoil structure on the subsequent soil water regime during the dry period is still rarely considered. The objective of this study was to ascertain the way of rainfall-induced topsoil structure changes on the subsequent soil water regime during the dry period. In a three-year-long experiment, six practices (CK, only crop; SM, straw mulching; PAM, polyacrylamide surface application; B, contour Bahia-grass strip; SPAM, straw mulching and polyacrylamide surface application; and BPAM, contour Bahia-grass strip and polyacrylamide surface application) were conducted at an 8° farmland with planting summer maize resulting in different topsoil structure and root-zone moisture, to establish and reveal the quantitatively relationship between the factors of topsoil structure and soil drought. Rainfall erosion significantly increased the soil crust coverage, and decreased the WSA 0.25, 0-30 mm soil porosity and mean pore size. There was no significant difference during the raining stage of root-zone water storage between CK and other practices. An index of soil drought intensity ( I) and degree ( D) was established using soil water loss rate and soil drought severity. The larger value of I means a higher rate of water loss. The larger value of D means more severe drought. During the dry period, I and D were significantly higher in CK than in other practices. I and D had significantly positively correlation with the crust size and crust coverage, and negatively with WSA 0.25, 15-30 mm soil porosity and mean pore size. Among of soil structure factors, the soil porosity had the largest effect on I and D. The rainfall-induced topsoil structure changes greatly deteriorated the root-zone regime during the dry period mainly due to significant increasing soil water loss but little improving the raining stage of soil water storage. Straw mulching had greater effects than other practices in alleviating rainfall-induced erosion and intermittent drought, and could be a better strategy applied for this region.

Evaluating equilibrium and non-equilibrium transport of bromide and isoproturon in disturbed and undisturbed soil columns.

PubMed

Dousset, S; Thevenot, M; Pot, V; Simunek, J; Andreux, F

2007-12-07

In this study, displacement experiments of isoproturon were conducted in disturbed and undisturbed columns of a silty clay loam soil under similar rainfall intensities. Solute transport occurred under saturated conditions in the undisturbed soil and under unsaturated conditions in the sieved soil because of a greater bulk density of the compacted undisturbed soil compared to the sieved soil. The objective of this work was to determine transport characteristics of isoproturon relative to bromide tracer. Triplicate column experiments were performed with sieved (structure partially destroyed to simulate conventional tillage) and undisturbed (structure preserved) soils. Bromide experimental breakthrough curves were analyzed using convective-dispersive and dual-permeability (DP) models (HYDRUS-1D). Isoproturon breakthrough curves (BTCs) were analyzed using the DP model that considered either chemical equilibrium or non-equilibrium transport. The DP model described the bromide elution curves of the sieved soil columns well, whereas it overestimated the tailing of the bromide BTCs of the undisturbed soil columns. A higher degree of physical non-equilibrium was found in the undisturbed soil, where 56% of total water was contained in the slow-flow matrix, compared to 26% in the sieved soil. Isoproturon BTCs were best described in both sieved and undisturbed soil columns using the DP model combined with the chemical non-equilibrium. Higher degradation rates were obtained in the transport experiments than in batch studies, for both soils. This was likely caused by hysteresis in sorption of isoproturon. However, it cannot be ruled out that higher degradation rates were due, at least in part, to the adopted first-order model. Results showed that for similar rainfall intensity, physical and chemical non-equilibrium were greater in the saturated undisturbed soil than in the unsaturated sieved soil. Results also suggested faster transport of isoproturon in the undisturbed soil due to higher preferential flow and lower fraction of equilibrium sorption sites.

Evaluating equilibrium and non-equilibrium transport of bromide and isoproturon in disturbed and undisturbed soil columns

NASA Astrophysics Data System (ADS)

Dousset, S.; Thevenot, M.; Pot, V.; Šimunek, J.; Andreux, F.

2007-12-01

In this study, displacement experiments of isoproturon were conducted in disturbed and undisturbed columns of a silty clay loam soil under similar rainfall intensities. Solute transport occurred under saturated conditions in the undisturbed soil and under unsaturated conditions in the sieved soil because of a greater bulk density of the compacted undisturbed soil compared to the sieved soil. The objective of this work was to determine transport characteristics of isoproturon relative to bromide tracer. Triplicate column experiments were performed with sieved (structure partially destroyed to simulate conventional tillage) and undisturbed (structure preserved) soils. Bromide experimental breakthrough curves were analyzed using convective-dispersive and dual-permeability (DP) models (HYDRUS-1D). Isoproturon breakthrough curves (BTCs) were analyzed using the DP model that considered either chemical equilibrium or non-equilibrium transport. The DP model described the bromide elution curves of the sieved soil columns well, whereas it overestimated the tailing of the bromide BTCs of the undisturbed soil columns. A higher degree of physical non-equilibrium was found in the undisturbed soil, where 56% of total water was contained in the slow-flow matrix, compared to 26% in the sieved soil. Isoproturon BTCs were best described in both sieved and undisturbed soil columns using the DP model combined with the chemical non-equilibrium. Higher degradation rates were obtained in the transport experiments than in batch studies, for both soils. This was likely caused by hysteresis in sorption of isoproturon. However, it cannot be ruled out that higher degradation rates were due, at least in part, to the adopted first-order model. Results showed that for similar rainfall intensity, physical and chemical non-equilibrium were greater in the saturated undisturbed soil than in the unsaturated sieved soil. Results also suggested faster transport of isoproturon in the undisturbed soil due to higher preferential flow and lower fraction of equilibrium sorption sites.

Seismic response of elevated rectangular water tanks considering soil structure interaction

NASA Astrophysics Data System (ADS)

Visuvasam, J.; Simon, J.; Packiaraj, J. S.; Agarwal, R.; Goyal, L.; Dhingra, V.

2017-11-01

The overhead staged water tanks are susceptible for high lateral forces during earthquakes. Due to which, the failure of beam-columns joints, framing elements and toppling of tanks arise. To avoid such failures, they are analyzed and designed for lateral forced induced by devastating earthquakes assuming the base of the structures are fixed and considering functional needs, response reduction, soil types and severity of ground shaking. In this paper, the flexible base was provided as spring stiffness in order to consider the effect of soil properties on the seismic behaviour of water tanks. A linear time history earthquake analysis was performed using SAP2000. Parametric studies have been carried out based on various types of soils such as soft, medium and hard. The soil stiffness values highly influence the time period and base shear of the structure. The ratios of time period of flexible to fixed base and base shear of flexible to fixed base were observed against capacities of water tank and the overall height of the system. The both responses are found to be increased as the flexibility of soil medium decreases

Effect of soil structure on the growth of bacteria in soil quantified using CARD-FISH

NASA Astrophysics Data System (ADS)

Juyal, Archana; Eickhorst, Thilo; Falconer, Ruth; Otten, Wilfred

2014-05-01

It has been reported that compaction of soil due to use of heavy machinery has resulted in the reduction of crop yield. Compaction affects the physical properties of soil such as bulk density, soil strength and porosity. This causes an alteration in the soil structure which limits the mobility of nutrients, water and air infiltration and root penetration in soil. Several studies have been conducted to explore the effect of soil compaction on plant growth and development. However, there is scant information on the effect of soil compaction on the microbial community and its activities in soil. Understanding the effect of soil compaction on microbial community is essential as microbial activities are very sensitive to abrupt environmental changes in soil. Therefore, the aim of this work was to investigate the effect of soil structure on growth of bacteria in soil. The bulk density of soil was used as a soil physical parameter to quantify the effect of soil compaction. To detect and quantify bacteria in soil the method of catalyzed reporter deposition-fluorescence in situ hybridization (CARD-FISH) was used. This technique results in high intensity fluorescent signals which make it easy to quantify bacteria against high levels of autofluorescence emitted by soil particles and organic matter. In this study, bacterial strains Pseudomonas fluorescens SBW25 and Bacillus subtilis DSM10 were used. Soils of aggregate size 2-1mm were packed at five different bulk densities in polyethylene rings (4.25 cm3).The soil rings were sampled at four different days. Results showed that the total number of bacteria counts was reduced significantly (P

Uncertainty in Ecohydrological Modeling in an Arid Region Determined with Bayesian Methods

PubMed Central

Yang, Junjun; He, Zhibin; Du, Jun; Chen, Longfei; Zhu, Xi

2016-01-01

In arid regions, water resources are a key forcing factor in ecosystem circulation, and soil moisture is the critical link that constrains plant and animal life on the soil surface and underground. Simulation of soil moisture in arid ecosystems is inherently difficult due to high variability. We assessed the applicability of the process-oriented CoupModel for forecasting of soil water relations in arid regions. We used vertical soil moisture profiling for model calibration. We determined that model-structural uncertainty constituted the largest error; the model did not capture the extremes of low soil moisture in the desert-oasis ecotone (DOE), particularly below 40 cm soil depth. Our results showed that total uncertainty in soil moisture prediction was improved when input and output data, parameter value array, and structure errors were characterized explicitly. Bayesian analysis was applied with prior information to reduce uncertainty. The need to provide independent descriptions of uncertainty analysis (UA) in the input and output data was demonstrated. Application of soil moisture simulation in arid regions will be useful for dune-stabilization and revegetation efforts in the DOE. PMID:26963523

Main factors controlling microbial community structure, growth and activity after reclamation of a tailing pond with aided phytostabilization

NASA Astrophysics Data System (ADS)

Zornoza, Raúl; Acosta, José A.; Martínez-Martínez, Silvia; Faz, Ángel; Bååth, Erland

2015-04-01

Reclamation on bare tailing ponds has the potential to represent soil genesis in Technosols favoring the understanding of the changes of microbial communities and function. In this study we used phytostabilization aided with calcium carbonate and pig slurry/manure to reclaim an acidic bare tailing pond with the aim of investigating the effect of amending and different species on microbial community structure and function. We sampled after two years of amending and planting: unamended tailing soil (UTS), non-rhizospheric amended tailing soil (ATS), rhizospheric soil from four species, and non-rhizospheric native forest soil (NS), which acted as reference. The application of amendments increased pH up to neutrality, organic carbon (Corg), C/N and aggregate stability, while decreased salinity and heavy metals availability. No effect of rhizosphere was observed on physicochemical properties, metals immobilization and microbial community structure and function. To account for confounding effects due to soil organic matter, microbial properties were expressed per Corg. The high increments in pH and Corg have been the main factors driving changes in microbial community structure and function. Bacterial biomass was higher in UTS, without significant differences among the rest of soils. Fungal biomass followed the trend UTS < ATS = rhizospheric soils < NS. Bacterial growth increased and fungal growth decreased with increasing pH, despite the high availability of metals at low pH. Enzyme activities were lower in UTS, being β-glucosidase and β-glucosaminidase activities highly correlated with bacterial growth. Microbial activities were not correlated with the exchangeable fraction of heavy metals, indicating that microbial function is not strongly affected by these metals, likely due to the efficiency of the reclamation procedure to reduce metals toxicity. Changes in microbial community composition were largely explained by changes in pH, heavy metals availability and Corg, with increments in fungal and actinobacterial proportions with soil amending. Acknowledgements R. Zornoza acknowledges the financial support to Fundación Séneca-Agencia de Ciencia y Tecnología de la Región de Murcia (Spain).

Laboratory Evaluation of the Effects of 3-Chloride Compounds on the Geotechnical Properties of an Expansive Subgrade Soil

NASA Astrophysics Data System (ADS)

Radhakrishnan, G.; Anjan Kumar, M.; Raju, G. V. R. Prasada

2017-12-01

Expansive soils are known to be problematic due to their nature and behavior. These soils show volume changes due to changes in moisture content, which cause distortions to structures constructed on them. Relentless efforts are being made all over the world to find solution to the problems of expansive soils. In the case of flexible pavements, unless the subgrade is appropriately treated during the construction stage, the maintenance cost will increase substantially due to deterioration. There are many methods of stabilising expansive subgrade soils. Chemical stabilisation is one such technique employed in improving the engineering properties of the expansive soil. Investigations on chemical stabilization of expansive soils revealed that conventionally used lime could be replaced by the chloride compound chemicals because of their ready dissolvability in water, ease of mixing with soil and supply of sufficient cations for ready cation exchange. The main objective of this work is to study the effectiveness of three chloride compound chemicals, ammonium chloride (NH4Cl), magnesium chloride (MgCl2) and aluminum chloride (AlCl3) on the geotechnical properties of an expansive soil. The chemicals content up to 2% were added to the soil and its effect on the index limits, swell pressure, compaction characteristics as well as California bearing ratio are studied. It was observed that aluminum chloride chemical content has a significantly higher influence than the other two chemicals and it could be recognized as an effective chemical stabilizer.

In situ consolidation of offshore petroleum well structural casings by electrokinetic methods

NASA Astrophysics Data System (ADS)

Wrixon, Robert Christopher

Offshore drilling operations encounter cement wash-out problems while setting the initial structural casing (0--200 ft depth) due to the soft, unconsolidated nature of the sea-bed. Structural casings set by alternative methods have failed in up to 50% of cases due to insufficient frictional bearing capacity. This dissertation presents a method of increasing the bearing capacity of a jet-drilled or slick-drilled casing in-situ by applying a potential difference such that the casing is anodic compared to a remote cathode. It has been shown experimentally that clayey formations will swell and stick to a simulated anodic casing by the combined electrokinetic processes of electroosmosis and electrophoresis. Any cavities around the "casing" are eliminated and the formation is flush against the metal surface, increasing bearing capacity. The formation around the "casing" dries out due to electroosmotic migration of water away from the anode, increasing the shear strength of the surrounding soil. Corrosion products at the anode can further increase the soil shear strength by a process known as electrochemical hardening. This investigation has shown that the bearing capacity of anodic casings can potentially be increased by a factor of up to 1,000% in soft clays and silty clays. The existence of an optimal level of electrokinetic consolidation, beyond which the soil shear strength begins to degrade, has been demonstrated. The difficulties of applying electrokinetic methods to saline soil environments have been addressed and the process has been shown to be successful, as long as the requisite electric field strength is maintained. The efficiency of the electrokinetic consolidation technique has been shown to be affected by the soil water content, soil mineralogy, power supplied, time of treatment and the choice of anode material. Experiments in marine sediment show that increases in bearing capacities of about 300% can be achieved at optimal treatment conditions. With likely current and power restrictions, increases of 50% to 100% are realistic. This level of increase still makes offshore electrokinetic casing consolidation a viable process, given that it is attainable quickly and at a modest power requirement and given the enormous cost of a structural casing collapse.

Simulating root-induced rhizosphere deformation and its effect on water flow

NASA Astrophysics Data System (ADS)

Aravena, J. E.; Ruiz, S.; Mandava, A.; Regentova, E. E.; Ghezzehei, T.; Berli, M.; Tyler, S. W.

2011-12-01

Soil structure in the rhizosphere is influenced by root activities, such as mucilage production, microbial activity and root growth. Root growth alters soil structure by moving and deforming soil aggregates, affecting water and nutrient flow from the bulk soil to the root surface. In this study, we utilized synchrotron X-ray micro-tomography (XMT) and finite element analysis to quantify the effect of root-induced compaction on water flow through the rhizosphere to the root surface. In a first step, finite element meshes of structured soil around the root were created by processing rhizosphere XMT images. Then, soil deformation by root expansion was simulated using COMSOL Multiphysics° (Version 4.2) considering the soil an elasto-plastic porous material. Finally, fluid flow simulations were carried out on the deformed mesh to quantify the effect of root-induced compaction on water flow to the root surface. We found a 31% increase in water flow from the bulk soil to the root due to a 56% increase in root diameter. Simulations also show that the increase of root-soil contact area was the dominating factor with respect to the calculated increase in water flow. Increase of inter-aggregate contacts in size and number were observed within a couple of root diameters away from the root surface. But their influence on water flow was, in this case, rather limited compared to the immediate soil-root contact.

Soil physical conditions as livestock treading effect in tropical Agroecosystem of dryland and strategies to mitigate desertification risk

NASA Astrophysics Data System (ADS)

Florentino, A.; Torres, D.; Ospina, A.; Contreras, J.; Palma, Z.; Silvera, J.

2012-04-01

Soil degradation in natural ecosystem of arid and semi-arid zones of Venezuela due to livestock treading (goats) it is an important problem that affect their environment functions; increase soil erodibility, bulk density, water losses and reduce porosity, water infiltration rate and soil structural stability. The presence of biological crust (BSC) in this type of soil it is very common. The objective of this study was to evaluate the soil surface physical quality through the use of selected indicators, mainly some of that related to structural stability, infiltrability and the prediction of soil erosion risk in two zones of Lara state: 1) Quíbor (QUI) and 2) Humocaro Bajo (HB). The study was conducted on two selected plots (30 m x 20 m) in each zone, with natural vegetation and BSC cover, with areas affected by different degree of compaction due to treading in the paths where the goats are moving. Five sites per plot (50 cm x 50 cm) under vegetation cover and five sites over the path with bare soil were sampled (0-7,5 and 7,5-15 cm depth). The results showed that soil macroaggregate stability (equivalent diameter of aggregates >0,25 mm) was significantly higher (p<0,05 %) in soil with vegetation cover and BSC compared with bare soil. Sealing index, as a measure of aggregate stability, determined in laboratory under simulated rain and expressed as hydraulic conductivity of soil surface sealing (Kse), decreased with decreasing soil vegetation cover and the presence of BSC. However, Ksei (i: inicial) and Ksef (f: final) were significantly greater in soil with more than 75 % of BSC in comparison to bare soils. The sealing index it is used to for to estimate changes in soil water losses. As the sealing index increases, the susceptibility of the soil to undergo surface sealing or slaking decrease. These results suggested that soil physical properties are potential indicators of soil quality with regard to soil erodibility and showed that soils under vegetation cover had higher quality level than bare soils. Some predictive regression equation had a high R2 value and was a useful tool for to evaluate the risk of extreme climatic changes and to mitigate their detrimental effects. We conclude that the global climatic change (CCG) will have a negative effect on these agroecosystems functions, mainly in soil and water conservation, carbon sequestration, and productivity. Natural recovery of soil physical properties from treading damage of pastoral soils will be possible in the future with the implementation of soil management strategies, mainly through re-vegetation and recuperation of the BSC. Key word: Soil structure; aggregate stability; soil sealing index; hydraulic conductivity of surface sealing.

Using synchrotron-based X-ray micro-computed tomography and high-performance pore-scale simulation to evaluate hydraulic properties in biochar-amended soils

NASA Astrophysics Data System (ADS)

Zhou, H.; Yu, X.; Chen, C.; Zeng, L.; Lu, S.; Wu, L.

2016-12-01

In this research, we combined synchrotron-based X-ray micro-computed tomography (SR-mCT), with three-dimensional lattice Bolzmann (LB) method, to quantify how the change in pore space architecture affected macroscopic hydraulic of two clayey soils amended with biochar. SR-mCT was used to characterize pore structures of the soils before and after biochar addition. The high-resolution soil pore structures were then directly used as internal boundary conditions for three-dimensional water flow simulations with the LB method, which was accelerated by graphics processing unit (GPU) parallel computing. It was shown that, due to the changes in soil pore geometry, the application of biochar increased the soil permeability by at least 1 order of magnitude, and decreased the tortuosity by 20-30%. This work was the first physics based modeling study on the effect of biochar amendment on soil hydraulic properties. The developed theories and techniques have promising potential in understanding the mechanisms of water and nutrient transport in soil at the pore scale.

Tropical Land Use Conversion Effects on Soil Microbial Community Structure and Function: Emerging Patterns and Knowledge Gaps

NASA Astrophysics Data System (ADS)

Seeley, M.; Marin-Spiotta, E.

2016-12-01

Modifications in vegetation due to land use conversions (LUC) between primary forests, pasture, cropping systems, tree plantations, and secondary forests drive shifts in soil microbial communities. These microbial community alterations affect carbon sequestration, nutrient cycling, aboveground biomass, and numerous other soil processes. Despite their importance, little is known about soil microbial organisms' response to LUC, especially in tropical regions where LUC rates are greatest. This project identifies current trends and uncertainties in tropical soil microbiology by comparing 56 published studies on LUC in tropical regions. This review indicates that microbial biomass and functional groups shifted in response to LUC, supporting demonstrated trends in changing soil carbon stocks due to LUC. Microbial biomass was greatest in primary forests when compared to secondary forests and in all forests when compared to both cropping systems and tree plantations. No trend existed when comparing pasture systems and forests, likely due to variations in pasture fertilizer use. Cropping system soils had greater gram positive and less gram negative bacteria than forest soils, potentially resulting in greater respiration of older carbon stocks in agricultural soils. Bacteria dominated primary forests while fungal populations were greatest in secondary forests. To characterize changes in microbial communities resulting from land use change, research must reflect the biophysical variation across the tropics. A chi-squared test revealed that the literature sites represented mean annual temperature variation across the tropics (p-value=0.66).

Conceptional Considerations to Energy Balance and Global Warming Potential of Soil Bioengineering Structures

NASA Astrophysics Data System (ADS)

von der Thannen, Magdalena; Paratscha, Roman; Smutny, Roman; Lampalzer, Thomas; Strauss, Alfred; Rauch, Hans Peter

2016-04-01

Nowadays there is a high demand on engineering solutions considering not only technical aspects but also ecological and aesthetic values. In this context soil bioengineering techniques are often used as standalone solutions or in combination with conventional engineering structures. It is a construction technique that uses biological components for hydraulic and civil engineering solutions. In general it pursues the same objectives as conventional civil engineering structures. Currently the used assessment methods for soil bioengineering structures are referencing technically, ecologically and socio-economically. In a modern engineering approach additionally, environmental impacts and potential added values should be considered. The research project E-Protect aims at developing Environmental Life Cycle Assessment (LCA) models for this special field of alpine protective constructions. Both, the Cumulative Energy Demand (CED) and the Global Warming Potential (GWP) should be considered in an Environmental LCA over the whole life cycle of an engineering structure. The life cycle itself can be divided into three phases: the construction phase, the use phase and the end of life phase. The paper represents a concept to apply an Environmental LCA model for soil bioengineering structures. Beside the construction phase of these structures particular attention will be given to the use phase. It is not only important in terms of engineering effects but also plays an important role for positive carbon footprint due to the growing plants of soil bioengineering structures in contrast to conventional structures. Innovative Environmental LCA models will be applied to soil bioengineering structures which provide a new transparency for the responsible planners and stakeholders, by pointing out the total consumption of resources in all construction phases and components.

Observed effects of soil organic matter content on the microwave emissivity of soils

NASA Technical Reports Server (NTRS)

O'Neill, P. E.; Jackson, T. J.

1990-01-01

In order to determine the significance of organic matter content on the microwave emissivity of soils when estimating soil moisture, field experiments were conducted in which 1.4 GHz microwave emissivity data were collected over test plots of sandy loam soil with different organic matter levels (1.8, 4.0, and 6.1 percent) for a range of soil moisture values. Analyses of the observed data show only minor variation in microwave emissivity due to a change in organic matter content at a given moisture level for soils with similar texture and structure. Predictions of microwave emissivity made using a dielectric model for aggregated soils exhibit the same trends and type of response as the measured data when appropriate values for the input parameters were utilized.

Observed effects of soil organic matter content on the microwave intensity of soils

NASA Technical Reports Server (NTRS)

Jackson, T. J.; Oneill, P. E.

1988-01-01

In order to determine the significance of organic matter content on the microwave emissivity of soils when estimating soil moisture, field experiments were conducted in which 1.4 GHz microwave emissivity data were collected over test plots of sandy loam soil with different organic matter levels (1.8, 4.0, and 6.1 percent) for a range of soil moisture values. Analyses of the observed data show only minor variation in microwave emissivity due to a change in organic matter content at a given moisture level for soils with similar texture and structure. Predictions of microwave emissivity made using a dielectric model for aggregated soils exhibit the same trends and type of response as the measured data when appropriate values for the input parameters were utilized.

Linking N2O emissions from biochar-amended soil to the structure and function of the N-cycling microbial community

PubMed Central

Harter, Johannes; Krause, Hans-Martin; Schuettler, Stefanie; Ruser, Reiner; Fromme, Markus; Scholten, Thomas; Kappler, Andreas; Behrens, Sebastian

2014-01-01

Nitrous oxide (N2O) contributes 8% to global greenhouse gas emissions. Agricultural sources represent about 60% of anthropogenic N2O emissions. Most agricultural N2O emissions are due to increased fertilizer application. A considerable fraction of nitrogen fertilizers are converted to N2O by microbiological processes (that is, nitrification and denitrification). Soil amended with biochar (charcoal created by pyrolysis of biomass) has been demonstrated to increase crop yield, improve soil quality and affect greenhouse gas emissions, for example, reduce N2O emissions. Despite several studies on variations in the general microbial community structure due to soil biochar amendment, hitherto the specific role of the nitrogen cycling microbial community in mitigating soil N2O emissions has not been subject of systematic investigation. We performed a microcosm study with a water-saturated soil amended with different amounts (0%, 2% and 10% (w/w)) of high-temperature biochar. By quantifying the abundance and activity of functional marker genes of microbial nitrogen fixation (nifH), nitrification (amoA) and denitrification (nirK, nirS and nosZ) using quantitative PCR we found that biochar addition enhanced microbial nitrous oxide reduction and increased the abundance of microorganisms capable of N2-fixation. Soil biochar amendment increased the relative gene and transcript copy numbers of the nosZ-encoded bacterial N2O reductase, suggesting a mechanistic link to the observed reduction in N2O emissions. Our findings contribute to a better understanding of the impact of biochar on the nitrogen cycling microbial community and the consequences of soil biochar amendment for microbial nitrogen transformation processes and N2O emissions from soil. PMID:24067258

Compost addition reduces porosity and chlordecone transfer in soil microstructure.

PubMed

Woignier, Thierry; Clostre, Florence; Fernandes, Paula; Rangon, Luc; Soler, Alain; Lesueur-Jannoyer, Magalie

2016-01-01

Chlordecone, an organochlorine insecticide, pollutes soils and contaminates crops and water resources and is biomagnified by food chains. As chlordecone is partly trapped in the soil, one possible alternative to decontamination may be to increase its containment in the soil, thereby reducing its diffusion into the environment. Containing the pesticide in the soil could be achieved by adding compost because the pollutant has an affinity for organic matter. We hypothesized that adding compost would also change soil porosity, as well as transport and containment of the pesticide. We measured the pore features and studied the nanoscale structure to assess the effect of adding compost on soil microstructure. We simulated changes in the transport properties (hydraulic conductivity and diffusion) associated with changes in porosity. During compost incubation, the clay microstructure collapsed due to capillary stresses. Simulated data showed that the hydraulic conductivity and diffusion coefficient were reduced by 95 and 70% in the clay microstructure, respectively. Reduced transport properties affected pesticide mobility and thus helped reduce its transfer from the soil to water and to the crop. We propose that the containment effect is due not only to the high affinity of chlordecone for soil organic matter but also to a trapping mechanism in the soil porosity.

Soil processes and functions across an international network of Critical Zone Observatories: Introduction to experimental methods and initial results

NASA Astrophysics Data System (ADS)

Banwart, Steven; Menon, Manoj; Bernasconi, Stefano M.; Bloem, Jaap; Blum, Winfried E. H.; Souza, Danielle Maia de; Davidsdotir, Brynhildur; Duffy, Christopher; Lair, Georg J.; Kram, Pavel; Lamacova, Anna; Lundin, Lars; Nikolaidis, Nikolaos P.; Novak, Martin; Panagos, Panos; Ragnarsdottir, Kristin Vala; Reynolds, Brian; Robinson, David; Rousseva, Svetla; de Ruiter, Peter; van Gaans, Pauline; Weng, Liping; White, Tim; Zhang, Bin

2012-11-01

Growth in human population and demand for wealth creates ever-increasing pressure on global soils, leading to soil losses and degradation worldwide. Critical Zone science studies the impact linkages between these pressures, the resulting environmental state of soils, and potential interventions to protect soil and reverse degradation. New research on soil processes is being driven by the scientific hypothesis that soil processes can be described along a life cycle of soil development. This begins with formation of new soil from parent material, development of the soil profile, and potential loss of the developed soil functions and the soil itself under overly intensive anthropogenic land use, thus closing the cycle. Four Critical Zone Observatories in Europe have been selected focusing research at sites that represent key stages along the hypothetical soil life cycle; incipient soil formation, productive use of soil for farming and forestry, and decline of soil due to longstanding intensive agriculture. Initial results from the research show that soil develops important biogeochemical properties on the time scale of decades and that soil carbon and the development of favourable soil structure takes place over similar time scales. A new mathematical model of soil aggregate formation and degradation predicts that set-aside land at the most degraded site studied can develop substantially improved soil structure with the accumulation of soil carbon over a period of several years. Further results demonstrate the rapid dynamics of soil carbon; how quickly it can be lost, and also demonstrate how data from the CZOs can be used to determine parameter values for models at catchment scale. A structure for a new integrated Critical Zone model is proposed that combines process descriptions of carbon and nutrient flows, a simplified description of the soil food web, and reactive transport; all coupled with a dynamic model for soil structure and soil aggregation. This approach is proposed as a methodology to analyse data along the soil life cycle and test how soil processes and rates vary within, and between, the CZOs representing different life cycle stages. In addition, frameworks are discussed that will help to communicate the results of this science into a more policy relevant format using ecosystem service approaches.

Tellurium Distribution and Speciation in Contaminated Soils from Abandoned Mine Tailings: Comparison with Selenium.

PubMed

Qin, Hai-Bo; Takeichi, Yasuo; Nitani, Hiroaki; Terada, Yasuko; Takahashi, Yoshio

2017-06-06

The distribution and chemical species of tellurium (Te) in contaminated soil were determined by a combination of microfocused X-ray fluorescence (μ-XRF), X-ray diffraction (μ-XRD), and X-ray absorption fine structure (μ-XAFS) techniques. Results showed that Te was present as a mixture of Te(VI) and Te(IV) species, while selenium (Se) was predominantly present in the form of Se(IV) in the soil contaminated by abandoned mine tailings. In the contaminated soil, Fe(III) hydroxides were the host phases for Se(IV), Te(IV), and Te(VI), but Te(IV) could be also retained by illite. The difference in speciation and solubility of Se and Te in soil can result from different structures of surface complexes for Se and Te onto Fe(III) hydroxides. Furthermore, our results suggest that the retention of Te(IV) in soil could be relatively weaker than that of Te(VI) due to structural incorporation of Te(VI) into Fe(III) hydroxides. These findings are of geochemical and environmental significance for better understanding the solubility, mobility, and bioavailability of Te in the surface environment. To the best of our knowledge, this is the first study reporting the speciation and host phases of Te in field soil by the μ-XRF-XRD-XAFS techniques.

Bacterial community structure in the rhizosphere of a Cry1Ac Bt-brinjal crop and comparison to its non-transgenic counterpart in the tropical soil.

PubMed

Singh, Amit Kishore; Rai, Govind Kumar; Singh, Major; Dubey, Suresh Kumar

2013-11-01

To elucidate whether the transgenic crop alters the rhizospheric bacterial community structure, a 2-year study was performed with Cry1Ac gene-inserted brinjal crop (Bt) and their near isogenic non-transformed trait (non-Bt). The event of Bt crop (VRBT-8) was screened using an insect bioassay and enzyme-linked immunosorbent assay. Soil moisture, NH4 (+)-N, NO3 (-)-N, and PO4 (-)-P level had non-significant variation. Quantitative polymerase chain reaction revealed that abundance of bacterial 16S rRNA gene copies were lower in soils associated with Bt brinjal. Microbial biomass carbon (MBC) showed slight reduction in Bt brinjal soils. Higher MBC values in the non-Bt crop soil may be attributed to increased root activity and availability of readily metabolizable carbon compounds. The restriction fragment length polymorphism of PCR-amplified rRNA gene fragments detected 13 different bacterial groups with the exclusive presence of β-Proteobacteria, Chloroflexus, Planctomycetes, and Fusobacteria in non-Bt, and Cyanobacteria and Bacteroidetes in Bt soils, respectively, reflecting minor changes in the community structure. Despite the detection of Cry1Ac protein in the rhizospheric soil, the overall impact of Cry1Ac expressing Bt brinjal was less compared to that due to seasonal changes.

Community structure of ammonia-oxidizing archaea and ammonia-oxidizing bacteria in soil treated with the insecticide imidacloprid.

PubMed

Cycoń, Mariusz; Piotrowska-Seget, Zofia

2015-01-01

The purpose of this experiment was to assess the effect of imidacloprid on the community structure of ammonia-oxidizing archaea (AOA) and ammonia-oxidizing bacteria (AOB) in soil using the denaturing gradient gel electrophoresis (DGGE) approach. Analysis showed that AOA and AOB community members were affected by the insecticide treatment. However, the calculation of the richness (S) and the Shannon-Wiener index (H) values for soil treated with the field rate (FR) dosage of imidacloprid (1 mg/kg soil) showed no changes in measured indices for the AOA and AOB community members. In turn, the 10∗FR dosage of insecticide (10 mg/kg soil) negatively affected the AOA community, which was confirmed by the decrease of the S and H values in comparison with the values obtained for the control soil. In the case of AOB community, an initial decline followed by the increase of the S and H values was obtained. Imidacloprid decreased the nitrification rate while the ammonification process was stimulated by the addition of imidacloprid. Changes in the community structure of AOA and AOB could be due to an increase in the concentration of N-NH4 (+), known as the most important factor which determines the contribution of these microorganisms to soil nitrification.

Community Structure of Ammonia-Oxidizing Archaea and Ammonia-Oxidizing Bacteria in Soil Treated with the Insecticide Imidacloprid

PubMed Central

Cycoń, Mariusz; Piotrowska-Seget, Zofia

2015-01-01

The purpose of this experiment was to assess the effect of imidacloprid on the community structure of ammonia-oxidizing archaea (AOA) and ammonia-oxidizing bacteria (AOB) in soil using the denaturing gradient gel electrophoresis (DGGE) approach. Analysis showed that AOA and AOB community members were affected by the insecticide treatment. However, the calculation of the richness (S) and the Shannon-Wiener index (H) values for soil treated with the field rate (FR) dosage of imidacloprid (1 mg/kg soil) showed no changes in measured indices for the AOA and AOB community members. In turn, the 10∗FR dosage of insecticide (10 mg/kg soil) negatively affected the AOA community, which was confirmed by the decrease of the S and H values in comparison with the values obtained for the control soil. In the case of AOB community, an initial decline followed by the increase of the S and H values was obtained. Imidacloprid decreased the nitrification rate while the ammonification process was stimulated by the addition of imidacloprid. Changes in the community structure of AOA and AOB could be due to an increase in the concentration of N-NH4 +, known as the most important factor which determines the contribution of these microorganisms to soil nitrification. PMID:25705674

The effect of nutrient deposition on bacterial communities in Arctic tundra soil

Treesearch

Barbara J. Campbell; Shawn W. Polson; Thomas E. Hanson; Michelle C. Mack; Edward A.G. Schuur

2010-01-01

The microbial communities of high-latitude ecosystems are expected to experience rapid changes over the next century due to climate warming and increased deposition of reactive nitrogen, changes that will likely affect microbial community structure and function. In moist acidic tundra (MAT) soils on the North Slope of the Brooks Range, Alaska, substantial losses of C...

Light, temperature, and soil moisture responses to elevation, evergreen understory, and small canopy gaps in the southern Appalachians

Treesearch

Barton D. Clinton

2003-01-01

Small canopy openings often alter understory microclimate, leading to changes in forest structure and composition. It is generally accepted that physical changes in the understory (i.e., microclimatic) due to canopy removal drive changes in basic forest processes, particularly seedling recruitment which is intrinsically linked to soil moisture availability, light and,...

Nematodes as bioindicators of soil degradation due to heavy metals.

PubMed

Šalamún, Peter; Renčo, Marek; Kucanová, Eva; Brázová, Tímea; Papajová, Ingrid; Miklisová, Dana; Hanzelová, Vladimíra

2012-11-01

The effect of distance from a heavy metal pollution source on the soil nematode community was investigated on four sampling sites along an 4 km transect originating at the Kovohuty a.s. Krompachy (pollution source). The soil nematode communities were exposed to heavy metal influence directly and through soil properties changes. We quantified the relative effects of total and mobile fraction of metals (As, Cd, Cr, Cu, Pb, and Zn) on soil ecosystem using the nematode community structure (trophic and c-p groups,) and ecological indices (Richness of genera, H', MI2-5, etc.). Pollution effects on the community structure of soil free living nematodes was found to be the highest near the pollution source, with relatively low population density and domination of insensitive taxa. A decrease in heavy metals contents along the transect was linked with an increase in complexity of nematode community. The majority of used indices (MI2-5, SI, H') negatively correlated (P < 0.05 or P < 0.01) with heavy metals content and were sensitive to soil ecosystem disturbance. Contamination by heavy metals has negatively affected the soil environment, which resulted in nematode community structure and ecological indices changes. Results showed that the free-living nematodes are useful tools for bioindication of contamination and could be used as an alternative to the common approaches based on chemical methods.

Electrochemical characterization of corrosion in materials of grounding systems, simulating conditions of synthetic soils with characteristics of local soils

NASA Astrophysics Data System (ADS)

Salas, Y.; Guerrero, L.; Vera-Monroy, S. P.; Blanco, J.; Jimenez, C.

2017-12-01

The integrity of structures buried in earthing becomes relevant when analysing maintenance and replacement costs of these systems, as the deterioration is mainly due to two factors, namely: the failures caused in the electrical systems, which are due to the system. Failure in earthing due to corrosion at the interface cause an alteration in the structure of the component material and generates an undesirable resistivity that cause malfunction in this type of protection systems. Two local soils were chosen that were categorized as sandy loam and clay loam type, whose chemical characteristics were simulated by means of an electrolyte corresponding to the amount of ions present determined by a soil characterization based on the CICE (effective cation exchange coefficient), which allows us to deduce the percentage of chloride and sulphate ions present for the different levels established in the experimental matrix. The interaction of these soils with grounding electrodes is a complex problem involving many factors to consider. In this study, the rates and corrosion currents of the different soils on two types of electrodes, one copper and the other AISI 304 stainless steel, were approximated by electrochemical techniques such as potentiodynamic curves and electrochemical impedance spectra. Considerably higher speeds were determined for copper-type electrodes when compared to those based on steel. However, from the Nyquist diagrams, it was noted that copper electrodes have better electrical performance than steel ones. The soil with the highest ionic activity turned out to be the sandy loam. The clay loam soil presents a tendency to water retention and this may be the reason for the different behaviour with respect to ionic mobility. The diffusion control in the steel seems to alter the ionic mobility because its corrosion rates proved to be very similar regardless of the type of soil chemistry. In general, corrosion rates fell since tenths of a millimetre every year to the hundredths of a millimetre in the case of the steel-based electrode, which are relatively small corrosion rates.

Fluid flow in porous media using image-based modelling to parametrize Richards' equation.

PubMed

Cooper, L J; Daly, K R; Hallett, P D; Naveed, M; Koebernick, N; Bengough, A G; George, T S; Roose, T

2017-11-01

The parameters in Richards' equation are usually calculated from experimentally measured values of the soil-water characteristic curve and saturated hydraulic conductivity. The complex pore structures that often occur in porous media complicate such parametrization due to hysteresis between wetting and drying and the effects of tortuosity. Rather than estimate the parameters in Richards' equation from these indirect measurements, image-based modelling is used to investigate the relationship between the pore structure and the parameters. A three-dimensional, X-ray computed tomography image stack of a soil sample with voxel resolution of 6 μm has been used to create a computational mesh. The Cahn-Hilliard-Stokes equations for two-fluid flow, in this case water and air, were applied to this mesh and solved using the finite-element method in COMSOL Multiphysics. The upscaled parameters in Richards' equation are then obtained via homogenization. The effect on the soil-water retention curve due to three different contact angles, 0°, 20° and 60°, was also investigated. The results show that the pore structure affects the properties of the flow on the large scale, and different contact angles can change the parameters for Richards' equation.

Changes in microbial structure and functional communities at different soil depths during 13C labelled root litter degradation

NASA Astrophysics Data System (ADS)

Sanaullah, Muhammad; Baumann, Karen; Chabbi, Abad; Dignac, Marie-France; Maron, Pierre-Alain; Kuzyakov, Yakov; Rumpel, Cornelia

2014-05-01

Soil organic matter turnover depends on substrate quality and microbial activity in soil but little is known about how addition of freshly added organic material modifies the diversity of soil microbial communities with in a soil profile. We took advantage of a decomposition experiment, which was carried out at different soil depths under field conditions and sampled litterbags with 13C-labelled wheat roots, incubated in subsoil horizons at 30, 60 and 90 cm depth for up to 36 months. The effect of root litter addition on microbial community structure, diversity and activity was studied by determining total microbial biomass, PLFA signatures, molecular tools (DNA genotyping and pyrosequencing of 16S and 18S rDNAs) and extracellular enzyme activities. Automated ribosomal intergenic spacer analysis (ARISA) was also carried out to determine the differences in microbial community structure. We found that with the addition of root litter, total microbial biomass as well as microbial community composition and structure changed at different soil depths and change was significantly higher at top 30cm soil layer. Moreover, in the topsoil, population of both gram-positive and gram-negative bacteria increased with root litter addition over time, while subsoil horizons were relatively dominated by fungal community. Extra-cellular enzyme activities confirmed relatively higher fungal community at subsoil horizons compared with surface soil layer with bacteria dominant microbial population. Bacterial-ARISA profiling illustrated that the addition of root litter enhanced the abundance of Actinobacteria and Proteobacteria, at all three soil depths. These bacteria correspond to copiotrophic attributes, which can preferentially consume of labile soil organic C pools. While disappearance of oligotrophic Acidobacteria confirmed the shifting of microbial communities due to the addition of readily available substrate. We concluded that root litter mixing altered microbial community development which was soil horizon specific and its effects on soil microbial activity may impact on nutrient cycling.

Visualization of soil structure and pore structure modifications by pioneering ground beetles (Cicindelidae) in surface sediments of an artificial catchment

NASA Astrophysics Data System (ADS)

Badorreck, Annika; Gerke, Horst H.; Weller, Ulrich; Vontobel, Peter

2010-05-01

An artificial catchment was constructed to study initial soil and ecosystem development. As a key process, the pore structure dynamics in the soil at the surface strongly influences erosion, infiltration, matter dynamics, and vegetation establishment. Little is known, however, about the first macropore formation in the very early stage. This presentation focuses on observations of soil pore geometry and its effect on water flow at the surface comparing samples from three sites in the catchment and in an adjacent "younger" site composed of comparable sediments. The surface soil was sampled in cylindrical plastic rings (10 cm³) down to 2 cm depth in three replicates each site and six where caves from pioneering ground-dwelling beetles Cicindelidae were found. The samples were scanned with micro-X-ray computed tomography (at UFZ-Halle, Germany) with a resolution of 0.084 mm. The infiltration dynamics were visualized with neutronradiography (at Paul-Scherer-Institute, Switzerland) on slab-type soil samples in 2D. The micro-tomographies exhibit formation of surface sealing whose thickness and intensity vary with silt and clay content. The CT images show several coarser- and finer-textured micro-layers at the sample surfaces that were formed as a consequence of repeated washing in of finer particles in underlying coarser sediment. In micro-depressions, the uppermost layers consist of sorted fine sand and silt due to wind erosion. Similar as for desert pavements, a vesicular pore structure developed in these sediments on top, but also scattered in fine sand- and silt-enriched micro-layers. The ground-dwelling activity of Cicindelidae beetles greatly modifies the soil structure through forming caves in the first centimetres of the soil. Older collapsed caves, which form isolated pores within mixed zones, were also found. The infiltration rates were severely affected both, by surface crusts and activity of ground-dwelling beetles. The observations demonstrate relatively high abiotic and biotic dynamics of soil pore structure in the soil surface even during the very early development stages. The structure formation has potentially great effects on changing runoff and infiltration by forming sealing layers or preferential flow paths.

Structural composition of organic matter in particle-size fractions of soils along a climo-biosequence in the main range of Peninsular Malaysia

NASA Astrophysics Data System (ADS)

Jafarzadeh-Haghighi, Amir Hossein; Shamshuddin, Jusop; Hamdan, Jol; Zainuddin, Norhazlin

2016-09-01

Information on structural composition of organic matter (OM) in particle-size fractions of soils along a climo-biosequence is sparse. The objective of this study was to examine structural composition and morphological characteristics of OM in particle-size fractions of soils along a climo-biosequence in order to better understand the factors and processes affecting structural composition of soil organic matter. To explore changes in structural composition of OM in soils with different pedogenesis, the A-horizon was considered for further analyses including particle-size fractionation, solid-state 13C nuclear magnetic resonance (NMR) spectroscopy and scanning electron microscopy (SEM). Due to the increase in the thickness of organic layer with increasing elevation, the A-horizon was situated at greater depth in soils of higher elevation. The relationship between relative abundances of carbon (C) structures and particle-size fractions was examined using principal component analysis (PCA). It was found that alkyl C (20.1-73.4%) and O-alkyl C (16.8-67.7%) dominated particle-size fractions. The proportion of alkyl C increased with increasing elevation, while O-alkyl C showed an opposite trend. Results of PCA confirmed this finding and showed the relative enrichment of alkyl C in soils of higher elevation. Increase in the proportion of alkyl C in 250-2000 μm fraction is linked to selective preservation of aliphatic compounds derived from root litter. SEM results showed an increase in root contribution to the 250-2000 μm fraction with increasing elevation. For the <53 μm fraction, pedogenic process of podzolization is responsible for the relative enrichment of alkyl C. This study demonstrates that changes in structural composition of OM in particle-size fractions of soils along the studied climo-biosequence are attributed to site-specific differences in pedogenesis as a function of climate and vegetation.

Effect of soil property uncertainties on permafrost thaw projections: a calibration-constrained analysis

NASA Astrophysics Data System (ADS)

Harp, D. R.; Atchley, A. L.; Painter, S. L.; Coon, E. T.; Wilson, C. J.; Romanovsky, V. E.; Rowland, J. C.

2016-02-01

The effects of soil property uncertainties on permafrost thaw projections are studied using a three-phase subsurface thermal hydrology model and calibration-constrained uncertainty analysis. The null-space Monte Carlo method is used to identify soil hydrothermal parameter combinations that are consistent with borehole temperature measurements at the study site, the Barrow Environmental Observatory. Each parameter combination is then used in a forward projection of permafrost conditions for the 21st century (from calendar year 2006 to 2100) using atmospheric forcings from the Community Earth System Model (CESM) in the Representative Concentration Pathway (RCP) 8.5 greenhouse gas concentration trajectory. A 100-year projection allows for the evaluation of predictive uncertainty (due to soil property (parametric) uncertainty) and the inter-annual climate variability due to year to year differences in CESM climate forcings. After calibrating to measured borehole temperature data at this well-characterized site, soil property uncertainties are still significant and result in significant predictive uncertainties in projected active layer thickness and annual thaw depth-duration even with a specified future climate. Inter-annual climate variability in projected soil moisture content and Stefan number are small. A volume- and time-integrated Stefan number decreases significantly, indicating a shift in subsurface energy utilization in the future climate (latent heat of phase change becomes more important than heat conduction). Out of 10 soil parameters, ALT, annual thaw depth-duration, and Stefan number are highly dependent on mineral soil porosity, while annual mean liquid saturation of the active layer is highly dependent on the mineral soil residual saturation and moderately dependent on peat residual saturation. By comparing the ensemble statistics to the spread of projected permafrost metrics using different climate models, we quantify the relative magnitude of soil property uncertainty to another source of permafrost uncertainty, structural climate model uncertainty. We show that the effect of calibration-constrained uncertainty in soil properties, although significant, is less than that produced by structural climate model uncertainty for this location.

Hardwood biochar and manure co-application to a calcareous soil.

PubMed

Ippolito, J A; Stromberger, M E; Lentz, R D; Dungan, R S

2016-01-01

Biochar may affect the mineralization rate of labile organic C sources such as manures via microbial community shifts, and subsequently affect nutrient release. In order to ascertain the positive or negative priming effect of biochar on manure, dairy manure (2% by wt.) and a hardwood-based, fast pyrolysis biochar were applied (0%, 1%, 2%, and 10% by wt.) to a calcareous soil. Destructive sampling occurred at 1, 2, 3, 4, 6 and 12 months to monitor for changes in soil chemistry, water content, microbial respiration, bacterial populations, and microbial community structure. Overall results showed that increasing biochar application rate improved the soil water content, which may be beneficial in limited irrigation or rainfall areas. Biochar application increased soil organic C content and plant-available Fe and Mn, while a synergistic biochar-manure effect increased plant-available Zn. Compared to the other rates, the 10% biochar application lowered concentrations of NO3-N; effects appeared masked at lower biochar rates due to manure application. Over time, soil NO3-N increased likely due to manure N mineralization, yet soil NO3-N in the 10% biochar rate remained lower as compared to other treatments. In the presence of manure, only the 10% biochar application caused subtle microbial community structure shifts by increasing the relative amounts of two fatty acids associated with Gram-negative bacteria and decreasing Gram-positive bacterial fatty acids, each by ∼1%. Our previous findings with biochar alone suggested an overall negative priming effect with increasing biochar application rates, yet when co-applied with manure the negative priming effect was eliminated. Published by Elsevier Ltd.

Permafrost soils and carbon cycling

DOE PAGES

Ping, C. L.; Jastrow, J. D.; Jorgenson, M. T.; ...

2015-02-05

Knowledge of soils in the permafrost region has advanced immensely in recent decades, despite the remoteness and inaccessibility of most of the region and the sampling limitations posed by the severe environment. These efforts significantly increased estimates of the amount of organic carbon stored in permafrost-region soils and improved understanding of how pedogenic processes unique to permafrost environments built enormous organic carbon stocks during the Quaternary. This knowledge has also called attention to the importance of permafrost-affected soils to the global carbon cycle and the potential vulnerability of the region's soil organic carbon (SOC) stocks to changing climatic conditions. Inmore » this review, we briefly introduce the permafrost characteristics, ice structures, and cryopedogenic processes that shape the development of permafrost-affected soils, and discuss their effects on soil structures and on organic matter distributions within the soil profile. We then examine the quantity of organic carbon stored in permafrost-region soils, as well as the characteristics, intrinsic decomposability, and potential vulnerability of this organic carbon to permafrost thaw under a warming climate. Overall, frozen conditions and cryopedogenic processes, such as cryoturbation, have slowed decomposition and enhanced the sequestration of organic carbon in permafrost-affected soils over millennial timescales. Due to the low temperatures, the organic matter in permafrost soils is often less humified than in more temperate soils, making some portion of this stored organic carbon relatively vulnerable to mineralization upon thawing of permafrost.« less

Methods, Computational Platform, Verification, and Application of Earthquake-Soil-Structure-Interaction Modeling and Simulation

NASA Astrophysics Data System (ADS)

Tafazzoli, Nima

Seismic response of soil-structure systems has attracted significant attention for a long time. This is quite understandable with the size and the complexity of soil-structure systems. The focus of three important aspects of ESSI modeling could be on consistent following of input seismic energy and a number of energy dissipation mechanisms within the system, numerical techniques used to simulate dynamics of ESSI, and influence of uncertainty of ESSI simulations. This dissertation is a contribution to development of one such tool called ESSI Simulator. The work is being done on extensive verified and validated suite for ESSI Simulator. Verification and validation are important for high fidelity numerical predictions of behavior of complex systems. This simulator uses finite element method as a numerical tool to obtain solutions for large class of engineering problems such as liquefaction, earthquake-soil-structure-interaction, site effect, piles, pile group, probabilistic plasticity, stochastic elastic-plastic FEM, and detailed large scale parallel models. Response of full three-dimensional soil-structure-interaction simulation of complex structures is evaluated under the 3D wave propagation. Domain-Reduction-Method is used for applying the forces as a two-step procedure for dynamic analysis with the goal of reducing the large size computational domain. The issue of damping of the waves at the boundary of the finite element models is studied using different damping patterns. This is used at the layer of elements outside of the Domain-Reduction-Method zone in order to absorb the residual waves coming out of the boundary layer due to structural excitation. Extensive parametric study is done on dynamic soil-structure-interaction of a complex system and results of different cases in terms of soil strength and foundation embedment are compared. High efficiency set of constitutive models in terms of computational time are developed and implemented in ESSI Simulator. Efficiency is done based on simplifying the elastic-plastic stiffness tensor of the constitutive models. Almost in all the soil-structure systems, there are interface zones in contact with each other. These zones can get detached during the loading or can slip on each other. In this dissertation the frictional contact element is implemented in ESSI Simulator. Extended verification has been done on the implemented element. The interest here is the effect of slipping and gap opening at the interface of soil and concrete foundation on the soil-structure system behavior. In fact transferring the loads to structure is defined based on the contact areas which will affect the response of the system. The effect of gap openings and sliding at the interfaces are shown through application examples. In addition, dissipation of the seismic energy due to frictional sliding of the interface zones are studied. Application Programming Interface (API) and Domain Specific Language (DSL) are being developed to increase developer's and user's modeling and simulation capabilities. API describes software services developed by developers that are used by users. A domain-specific language (DSL) is a small language which usually focuses on a particular problem domain in software. In general DSL programs are translated to a common function or library which can be viewed as a tool to hide the details of the programming, and make it easier for the user to deal with the commands.

Copper pollution decreases the resistance of soil microbial community to subsequent dry-rewetting disturbance.

PubMed

Li, Jing; Wang, Jun-Tao; Hu, Hang-Wei; Ma, Yi-Bing; Zhang, Li-Mei; He, Ji-Zheng

2016-01-01

Dry-rewetting (DW) disturbance frequently occurs in soils due to rainfall and irrigation, and the frequency of DW cycles might exert significant influences on soil microbial communities and their mediated functions. However, how microorganisms respond to DW alternations in soils with a history of heavy metal pollution remains largely unknown. Here, soil laboratory microcosms were constructed to explore the impacts of ten DW cycles on the soil microbial communities in two contrasting soils (fluvo-aquic soil and red soil) under three copper concentrations (zero, medium and high). Results showed that the fluctuations of substrate induced respiration (SIR) decreased with repeated cycles of DW alternation. Furthermore, the resistance values of substrate induced respiration (RS-SIR) were highest in non-copper-stressed (zero) soils. Structural equation model (SEM) analysis ascertained that the shifts of bacterial communities determined the changes of RS-SIR in both soils. The rate of bacterial community variance was significantly lower in non-copper-stressed soil compared to the other two copper-stressed (medium and high) soils, which might lead to the higher RS-SIR in the fluvo-aquic soil. As for the red soil, the substantial increase of the dominant group WPS-2 after DW disturbance might result in the low RS-SIR in the high copper-stressed soil. Moreover, in both soils, the bacterial diversity was highest in non-copper-stressed soils. Our results revealed that initial copper stress could decrease the resistance of soil microbial community structure and function to subsequent DW disturbance. Copyright © 2015. Published by Elsevier B.V.

Crystal structure control of aluminized clay minerals on the mobility of caesium in contaminated soil environments

NASA Astrophysics Data System (ADS)

Dzene, Liva; Ferrage, Eric; Viennet, Jean-Christophe; Tertre, Emmanuel; Hubert, Fabien

2017-02-01

Radioactive caesium pollution resulting from Fukushima Dai-ichi and Chernobyl nuclear plant accidents involves strong interactions between Cs+ and clays, especially vermiculite-type minerals. In acidic soil environments, such as in Fukushima area, vermiculite is subjected to weathering processes, resulting in aluminization. The crystal structure of aluminized clays and its implications for Cs+ mobility in soils remain poorly understood due to the mixture of these minerals with other clays and organic matter. We performed acidic weathering of a vermiculite to mimic the aluminization process in soils. Combination of structure analysis and Cs+ extractability measurements show that the increase of aluminization is accompanied by an increase in Cs+ mobility. Crystal structure model for aluminized vermiculite is based on the interstratification of unaltered vermiculite layers and aluminized layers within the same particle. Cs+ in vermiculite layers is poorly mobile, while the extractability of Cs+ is greatly enhanced in aluminized layers. The overall reactivity of the weathered clay (cation exchange capacity, Cs+ mobility) is then governed by the relative abundance of the two types of layers. The proposed layer model for aluminized vermiculite with two coexisting populations of caesium is of prime importance for predicting the fate of caesium in contaminated soil environments.

Rhizosphere biophysics and root water uptake

NASA Astrophysics Data System (ADS)

Carminati, Andrea; Zarebanadkouki, Mohsen; Ahmed, Mutez A.; Passioura, John

2016-04-01

The flow of water into the roots and the (putative) presence of a large resistance at the root-soil interface have attracted the attention of plant and soil scientists for decades. Such resistance has been attributed to a partial contact between roots and soil, large gradients in soil matric potential around the roots, or accumulation of solutes at the root surface creating a negative osmotic potential. Our hypothesis is that roots are capable of altering the biophysical properties of the soil around the roots, the rhizosphere, facilitating root water uptake in dry soils. In particular, we expect that root hairs and mucilage optimally connect the roots to the soil maintaining the hydraulic continuity across the rhizosphere. Using a pressure chamber apparatus we measured the relation between transpiration rate and the water potential difference between soil and leaf xylem during drying cycles in barley mutants with and without root hairs. The samples were grown in well structured soils. At low soil moistures and high transpiration rates, large drops in water potential developed around the roots. These drops in water potential recovered very slowly, even after transpiration was severely decreased. The drops in water potential were much bigger in barley mutants without root hairs. These mutants failed to sustain high transpiration rates in dry conditions. To explain the nature of such drops in water potential across the rhizosphere we performed high resolution neutron tomography of the rhizosphere of the barleys with and without root hairs growing in the same soil described above. The tomograms suggested that the hydraulic contact between the soil structures was the highest resistance for the water flow in dry conditions. The tomograms also indicate that root hairs and mucilage improved the hydraulic contact between roots and soil structures. At high transpiration rates and low water contents, roots extracted water from the rhizosphere, while the bulk soil, due its low unsaturated conductivity, failed to compensate root water uptake. We conclude that root hairs are functional to increase the contact area between the roots and the soil structures and mucilage maintains wet the soil region between root hairs. These observations demonstrate the importance of the biophysical processes in the rhizosphere in modulating root water uptake.

Shifts in bacterial community structure during succession in a glacier foreland of the High Arctic.

PubMed

Kim, Mincheol; Jung, Ji Young; Laffly, Dominique; Kwon, Hye Young; Lee, Yoo Kyung

2017-01-01

Primary succession after glacier retreat has been widely studied in plant communities, but bacterial succession is still poorly understood. In particular, few studies of microbial succession have been performed in the Arctic. We investigated the shifts in bacterial community structure and soil physicochemical properties along a successional gradient in a 100-year glacier foreland of the High Arctic. Multivariate analyses revealed that time after glacier retreat played a key role in associated bacterial community structure during succession. However, environmental filtering (i.e. pH and soil temperature) also accounted for a different, but substantial, proportion of the bacterial community structure. Using the functional trait-based approach, we found that average rRNA operon (rrn) copy number of bacterial communities is high in earlier successional stages and decreased over time. This suggests that soil bacterial taxa with higher rrn copy number have a selective advantage in early successional stages due to their ability of rapidly responding to nutrient inputs in newly exposed soils after glacier retreat. Taken together, our results demonstrate that both deglaciation time and environmental filters play key roles in structuring bacterial communities and soil bacterial groups with different ecological strategies occur in different stages of succession in this glacier foreland. © FEMS 2016. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Long term drainage alters plant biodiversity and soil C- and N-storage

NASA Astrophysics Data System (ADS)

Wolf, K.; Bol, R.; Dungait, J. A. J.; Dixon, L.; Dhanoa, D.; Beaumont, D.; Wiesenberg, G. L. B.

2012-04-01

Moisture and slope position can have a strong influence on soil properties and plant communities. In a long term permanent grassland experiment, sub-surface drainage was introduced in 1982 on some plots of Rowden Moor at North Wyke (SW UK). The soil is a Stagnic vertic Cambisol with a dense clay layer at shallow depth. After drainage the plant community had shifted from a Lolium perenne dominated grassland with patches of Juncus sp. towards a typical grassland plant community dominated by Lolium perenne and Trifolium sp. In addition, soil carbon and nitrogen concentrations significantly decreased. This is related to a smaller contribution of plant-derived organic matter to soil due to the change in plant community structure, and the enhanced mineralization of soil organic matter (SOM) under lower soil moisture. However, for C:N ratios neither plants nor soil did reveal any drainage related change arguing for an identical degradability of plant and soil organic matter. Furthermore the δ13C values tend to get more negative in soil, which could be related to the changing plant community. For δ15N no changes were observed, which was surprising as increase δ15N values were expected due to the increase in legumes on the drained plot. Changes in the chemical composition of SOM were also examined using compositional changes of soil n-alkanes. A shift in the alkane abundance occurs from the upper part of the slope (dominated by n-C31), to the bottom parts (n-C29 enriched). The carbon preference index and average chain length of alkanes correlated between undrained and drained plots and decreased down slope. Similarly, several alkane ratios like n-C27/n-C31 declined, due to the enhanced mineralization. Hence, the molecular pattern changed on the one hand due to changing contribution of plant derived organic matter and on the other hand because of changing preservation of organic matter in soil. The study showed that drainage has a long term effect on the plant community leading to depletion in C- and N-contents and a change in the chemical composition of SOM.

Utilization of microwave energy for decontamination of oil polluted soils.

PubMed

Iordache, Daniela; Niculae, Dumitru; Francisc, Ioan Hathazi

2010-01-01

Soil oil (petroleum) product pollution represents a great environmental threat as it may contaminate the neighboring soils and surface and underground water. Liquid fuel contamination may occur anywhere during oil (petroleum) product transportation, storing, handling and utilization. The polluted soil recovery represents a complex process due to the wide range of physical, chemical and biological properties of soils which should be analyzed in connection with the study of the contaminated soil behavior under the microwave field action. The soil, like any other non-metallic material, can be heated through microwave energy absorption due to the dielectric losses, expressed by its dielectric complex constant. Oil polluted soil behaves differently in a microwave field depending on the nature, structure and amount of the polluting fuel. Decontamination is performed through volatilization and retrieval of organic contaminant volatile components. After decontamination only a soil fixed residue remains, which cannot penetrate the underground anymore. In carrying out the soil recovery process by means of this technology we should also consider the soil characteristics such as: the soil type, temperature, moisture.The first part of the paper presents the theoretical aspects relating to the behavior of the polluted soil samples in the microwave field, as well as their relating experimental data. The experimental data resulting from the analysis of soils with a different level of pollution point out that the degree of pollutant recovery is high, contributing to changing the initial classification of soils from the point of view of pollution. The paper graphically presents the levels of microwave generated and absorbed power in soil samples, soil temperature during experimentations, specific processing parameters in a microwave field. It also presents the constructive solution of the microwave equipment designed for the contaminated soil in situ treatment.

Contribution of species-specific chemical signatures to soil organic matter in Kohala, HI.

NASA Astrophysics Data System (ADS)

Stewart, C. E.; Amatangelo, K.; Neff, J. C.

2008-12-01

Soil organic matter (SOM) inherits much of its chemical structure from the dominant vegetation, including phenolic (lignin-derived), aromatic, and aliphatic (cutin and wax-derived) compounds. The Hawaiian fern species Dicranopteris decomposes more slowly than the angiosperm, Cheirodendron due to high concentrations of recalcitrant C compounds. These aliphatic fern leaf waxes are well-preserved and may comprise a large portion of the recalcitrant organic matter in these soils. Our objective was to determine the chemical signature of fern and angiosperm vegetation types and trace the preservation or loss of those compounds into the soil. We collected live tissue, litter, roots, and soil (<53 μm) from five dominant vegetation types including two angiosperms Cheirodendron and Metrosideros, two basal ferns Dicranopteris and Cibotium and a polypod fern Diplazium in Kohala, HI. We characterized them via TMAH-pyrolysis-gas chromatography-mass spectrometry. We found distinct chemical differences between angiosperm and fern vegetation; angiosperm contained more G- and S-derived lignin structures and the fern species contained greater relative abundances of P-derived lignin and tannin-derivatives. There was a general decrease of lignin-derived phenolic compounds from live to litter to soils and an increase in more recalcitrant, aromatic and aliphatic C. Recalcitrant fern-derived cutin and leaf waxes (alkene and alkanes structures) were evident in the soils, but clear species differences were not observed. Although ferns contain distinct lipid and wax-derived compounds, soils developed under fern do not appear to accumulate these compounds in SOM.

Thermal separation of soil particles from thermal conductivity measurement under various air pressures.

PubMed

Lu, Sen; Ren, Tusheng; Lu, Yili; Meng, Ping; Zhang, Jinsong

2017-01-05

The thermal conductivity of dry soils is related closely to air pressure and the contact areas between solid particles. In this study, the thermal conductivity of two-phase soil systems was determined under reduced and increased air pressures. The thermal separation of soil particles, i.e., the characteristic dimension of the pore space (d), was then estimated based on the relationship between soil thermal conductivity and air pressure. Results showed that under both reduced and increased air pressures, d estimations were significantly larger than the geometrical mean separation of solid particles (D), which suggested that conductive heat transfer through solid particles dominated heat transfer in dry soils. The increased air pressure approach gave d values lower than that of the reduced air pressure method. With increasing air pressure, more collisions between gas molecules and solid surface occurred in micro-pores and intra-aggregate pores due to the reduction of mean free path of air molecules. Compared to the reduced air pressure approach, the increased air pressure approach expressed more micro-pore structure attributes in heat transfer. We concluded that measuring thermal conductivity under increased air pressure procedures gave better-quality d values, and improved soil micro-pore structure estimation.

Tropical soil bacterial communities in Malaysia: pH dominates in the equatorial tropics too.

PubMed

Tripathi, Binu M; Kim, Mincheol; Singh, Dharmesh; Lee-Cruz, Larisa; Lai-Hoe, Ang; Ainuddin, A N; Go, Rusea; Rahim, Raha Abdul; Husni, M H A; Chun, Jongsik; Adams, Jonathan M

2012-08-01

The dominant factors controlling soil bacterial community variation within the tropics are poorly known. We sampled soils across a range of land use types--primary (unlogged) and logged forests and crop and pasture lands in Malaysia. PCR-amplified soil DNA for the bacterial 16S rRNA gene targeting the V1-V3 region was pyrosequenced using the 454 Roche machine. We found that land use in itself has a weak but significant effect on the bacterial community composition. However, bacterial community composition and diversity was strongly correlated with soil properties, especially soil pH, total carbon, and C/N ratio. Soil pH was the best predictor of bacterial community composition and diversity across the various land use types, with the highest diversity close to neutral pH values. In addition, variation in phylogenetic structure of dominant lineages (Alphaproteobacteria, Beta/Gammaproteobacteria, Acidobacteria, and Actinobacteria) is also significantly correlated with soil pH. Together, these results confirm the importance of soil pH in structuring soil bacterial communities in Southeast Asia. Our results also suggest that unlike the general diversity pattern found for larger organisms, primary tropical forest is no richer in operational taxonomic units of soil bacteria than logged forest, and agricultural land (crop and pasture) is actually richer than primary forest, partly due to selection of more fertile soils that have higher pH for agriculture and the effects of soil liming raising pH.

Controls upon microbial accessibility to soil organic matter following woody plant encroachment into grasslands

NASA Astrophysics Data System (ADS)

Creamer, C. A.; Boutton, T. W.; Filley, T. R.

2009-12-01

Woody plant encroachment (WPE) into savannas and grasslands is a global phenomenon that alters soil organic matter (SOM) dynamics through changes in litter quality and quantity, soil structure, microbial ecology, and soil hydrology. To elucidate the controls upon microbial accessibility to SOM, bulk soils from a chronosequence of progressive WPE into native grasslands at the Texas A&M Agricultural Experimental Station La Copita Research Area were incubated for one year. The quantity and stable carbon isotope composition of respired CO2, plant biopolymer chemistry in SOM, and microbial community structure were tracked. Respiration rates declined steadily over the course of the experiment with 15-25% of the total CO2 respired released in the first month of incubation. Between 8 and 18% of the total carbon was mineralized to CO2 throughout the incubation. After day 84 a significantly (p < 0.05) greater portion of carbon was mineralized from soils of older woody clusters (34-86 years) than from soils of younger clusters (14-23 years) and the native grassland. Approximately 80% of patterns seen in cumulative CO2 loss could be explained by the proportions of macro- and micro-aggregates within each soil, suggesting soil structure is a major controlling factor of respiration rates. Despite documented carbon accrual within La Copita soils due to WPE, we observed no evidence of enhanced carbon stabilization in these respiration experiments. In fact, a greater proportion of total carbon was lost from the soil of mature woody stands than from young stands, suggesting carbon accumulation observed with WPE may be due to greater input rates or microbial dynamics not captured in the laboratory incubation. A cluster approximately 34 years in age represents a transition point in WPE where respiration dynamics become distinct between grassland and wooded elements. By day 84 of the incubation CO2 respired from all soils was depleted with respect to bulk SOM (1.5 to 5‰) and this pattern remained for the rest of the incubation. As the depletion of CO2 relative to bulk SOM was observed in grassland and cluster soils, we hypothesized the depleted signature resulted from the utilization of depleted biopolymers, specifically lignin, cutin and suberin, as hypothesized by others. Quantitative and isotopic comparisons of these monomers prior to and following the incubation will determine if selective compound utilization is a reason for this depletion. The results discussed herein provide important insights into the dynamics of SOM accrual with WPE as well as respiration dynamics during laboratory incubations.

Pipelines subject to slow landslide movements: Structural modeling vs field measurement

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bruschi, R.; Glavina, S.; Spinazze, M.

1996-12-01

In recent years finite element techniques have been increasingly used to investigate the behavior of buried pipelines subject to soil movements. The use of these tools provides a rational basis for the definition of minimum wall thickness requirements in landslide crossings. Furthermore the design of mitigation measures or monitoring systems which control the development of undesirable strains in the pipe wall over time, requires a detailed structural modeling. The scope of this paper is to discuss the use of dedicated structural modeling with relevant calibration to field measurements. The strain measurements used were regularly gathered from pipe sections, in twomore » different sites over a period of time long enough to record changes of axial strain due to soil movement. Detailed structural modeling of pipeline layout in both sites and for operating conditions, is applied. Numerical simulations show the influence of the distribution of soil movement acting on the pipeline with regards to the state of strain which can be developed in certain locations. The role of soil nature and direction of relative movements in the definition of loads transferred to the pipeline, is also discussed.« less

Fractal Feature of Particle-Size Distribution in the Rhizospheres and Bulk Soils during Natural Recovery on the Loess Plateau, China

PubMed Central

Song, Zilin; Zhang, Chao; Liu, Guobin; Qu, Dong; Xue, Sha

2015-01-01

The application of fractal geometry to describe soil structure is an increasingly useful tool for better understanding the performance of soil systems. Only a few studies, however, have focused on the structure of rhizospheric zones, where energy flow and nutrient recycling most frequently occur. We used fractal dimensions to investigate the characteristics of particle-size distribution (PSD) in the rhizospheres and bulk soils of six croplands abandoned for 1, 5, 10, 15, 20, and 30 years on the Loess Plateau of China and evaluated the changes over successional time. The PSDs of the rhizospheres and the fractal dimensions between rhizosphere soil and bulk soils during the natural succession differed significantly due to the influence of plant roots. The rhizospheres had higher sand (0.05–1.00 mm) contents, lower silt (<0.002 mm) contents, and lower fractal dimensions than the bulk soils during the early and intermediate successional stages (1–15 years). The fractal dimensions of the rhizosphere soil and bulk soil ranged from 2.102 to 2.441 and from 2.214 to 2.459, respectively, during the 30-year restoration. Rhizospheric clay and silt contents and fractal dimension tended to be higher and sand content tended to be lower as abandonment age increased, but the bulk soils had the opposite trend. Linear regression analysis indicated that the fractal dimensions of both the rhizospheres and bulk soils were significantly linearly correlated with clay, sand, organic-carbon, and total-nitrogen contents, with R 2 ranging from 0.526 to 0.752 (P<0.001). In conclusion, PSD differed significantly between the rhizosphere soil and bulk soil. The fractal dimension was a sensitive and useful index for quantifying changes in the properties of the different soil zones. This study will greatly aid the application of the fractal method for describing soil structure and nutrient status and the understanding of the performance of rhizospheric zones during ecological restoration. PMID:26368339

Changing roles of ammonia-oxidizing bacteria and archaea in a continuously acidifying soil caused by over-fertilization with nitrogen.

PubMed

Song, He; Che, Zhao; Cao, Wenchao; Huang, Ting; Wang, Jingguo; Dong, Zhaorong

2016-06-01

Nitrification coupled with nitrate leaching contributes to soil acidification. However, little is known about the effect of soil acidification on nitrification, especially on ammonia oxidation that is the rate-limiting step of nitrification and performed by ammonia-oxidizing bacteria (AOB) and archaea (AOA). Serious soil acidification occurs in Chinese greenhouses due to the overuse of N-fertilizer. In the present study, greenhouse soils with 1, 3, 5, 7, and 9 years of vegetable cultivation showed a consistent pH decline (i.e., 7.0, 6.3, 5.6, 4.9, and 4.3). Across the pH gradient, we analyzed the community structure and abundance of AOB and AOA by pyrosequencing and real-time PCR techniques, respectively. The recovered nitrification potential (RNP) method was used to determine relative contributions of AOA and AOB to nitrification potential. The results revealed that soil acidification shaped the community structures of AOA and AOB. In acidifying soil, soil pH, NH3 concentration, and DOC content were critical factors shaping ammonia oxidizer community structure. AOB abundance, but not AOA, was strongly influenced by soil acidification. When soil pH was below 5.0, AOA rather than AOB were responsible for almost all of the RNP. However, when soil pH ranged from 5.6 to 7.0, AOB were the major contributors to RNP. The group I.1a-associatied AOA had more relative abundance in low pH (pH<6.3), whereas group I.1b tended to prefer neutral pH. Clusters 2, 10, and 12 in AOB were more abundant in acidic soil (pH <5.6), while Nitrosomonas-like lineage and unclassified lineage 3 were prevailing in neutral soil and slightly acidic soil (pH, 6.0-6.5), respectively. These results suggested that soil acidification had a profound impact on ammonia oxidation and more specific lineages in AOB occupying different pH-associated niches required further investigation.

Small scale variability of soil parameters in different land uses on the southern slopes of Mount Kilimanjaro

NASA Astrophysics Data System (ADS)

Bogner, Christina; Kühnel, Anna; Hepp, Johannes; Huwe, Bernd

2016-04-01

The Kilimanjaro region in Tanzania constitutes a particularity compared to other areas in the country. Because enough water is available the population grows rapidly and large areas are converted from natural ecosystems to agricultural areas. Therefore, the southern slopes of Mt. Kilimanjaro encompass a complex mosaic of different land uses like coffee plantations, maize, agroforestry or natural savannah. Coffee is an important cash crop in the region and is owned mostly by large companies. In contrast, the agroforestry is a traditional way of agriculture and has been sustained by the Chagga tribe for centuries. These so called homegardens are organised as multi-level systems and contain a mixture of different crops. Correlations in soil and vegetation data may serve as indicators for crop and management impacts associated to different types of land use. We hypothesize that Chagga homegardens, for example, show a more pronounced spatial autocorrelation compared to coffee plantations due to manifold above and belowground crop structures, whereas the degree of anisotropy is assumed to be higher in the coffee sites due to linear elements in management. Furthermore, we hypothesize that the overall diversity of soil parameters in homegardens on a larger scale is higher, as individual owners manage their field differently, whereas coffee plantation management often follows general rules. From these general hypotheses we derive two specific research questions: a) Are there characteristic differences in the spatial organisation of soil physical parameters of different land uses? b) Is there a recognizable relationship between vegetation structure and soil physical parameters of topsoils? We measured soil physical parameters in the topsoil (bulk density, stone content, texture, soil moisture and penetration resistance). Additionally, we took spectra of soil samples with a portable VIS-NIR spectrometer to determine C and N and measured leaf area index and troughfall as an indicator of vegetation patterns. First results support our general hypotheses. In the coffee plantation anisotropic variation of soil parameters clearly showed the anthropogenic influence like compaction due to agricultural machinery. However, soil bulk density and penetration resistance in the homegarden were also quite variable at the sites. The larger variability of throughfall in the homegarden is reflected in the patterns of soil moisture. Regarding the larger scale, where we compared different homegardens and coffee plantations along the southern slope of the mountain, soil parameters of the coffee plots were less diverse than those of the homegardens.

Microbial Community and Functional Gene Changes in Arctic Tundra Soils in a Microcosm Warming Experiment

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yang, Ziming; Yang, Sihang; Van Nostrand, Joy D.

Microbial decomposition of soil organic carbon (SOC) in the thawing Arctic permafrost is one of the most important, but poorly understood, processes in determining the greenhouse gases feedback of tundra ecosystems to climate. Here in this paper, we examine changes in microbial community structure during an anoxic incubation at either –2 or 8 °C for up to 122 days using both an organic and a mineral soil collected from the Barrow Environmental Observatory in northern Alaska, USA. Soils were characterized for SOC chemistry, and GeoChips were used to determine microbial community structure and functional genes associated with C degradation andmore » Fe(III) reduction. We observed notable decreases in functional gene diversity (at P < 0.05) in response to warming at 8 °C, particularly in the organic soil. A number of genes associated with SOC degradation, fermentation, methanogenesis, and iron cycling decreased significantly (P < 0.05) after 122 days of incubation, which coincided well with decreasing labile SOC content, soil respiration, methane production, and iron reduction. The soil type (i.e., organic vs. mineral) and the availability of labile SOC were among the most significant environmental factors impacting the functional community structure. In contrast, the functional structure was largely unchanged in the –2 °C incubation due to low microbial activity resulting in less competition or exclusion. These results demonstrate the vulnerability of SOC in Arctic tundra to warming, facilitated by iron reduction and methanogenesis, and the importance of microbial communities in moderating such vulnerability.« less

Microbial Community and Functional Gene Changes in Arctic Tundra Soils in a Microcosm Warming Experiment

DOE PAGES

Yang, Ziming; Yang, Sihang; Van Nostrand, Joy D.; ...

2017-09-19

Microbial decomposition of soil organic carbon (SOC) in the thawing Arctic permafrost is one of the most important, but poorly understood, processes in determining the greenhouse gases feedback of tundra ecosystems to climate. Here in this paper, we examine changes in microbial community structure during an anoxic incubation at either –2 or 8 °C for up to 122 days using both an organic and a mineral soil collected from the Barrow Environmental Observatory in northern Alaska, USA. Soils were characterized for SOC chemistry, and GeoChips were used to determine microbial community structure and functional genes associated with C degradation andmore » Fe(III) reduction. We observed notable decreases in functional gene diversity (at P < 0.05) in response to warming at 8 °C, particularly in the organic soil. A number of genes associated with SOC degradation, fermentation, methanogenesis, and iron cycling decreased significantly (P < 0.05) after 122 days of incubation, which coincided well with decreasing labile SOC content, soil respiration, methane production, and iron reduction. The soil type (i.e., organic vs. mineral) and the availability of labile SOC were among the most significant environmental factors impacting the functional community structure. In contrast, the functional structure was largely unchanged in the –2 °C incubation due to low microbial activity resulting in less competition or exclusion. These results demonstrate the vulnerability of SOC in Arctic tundra to warming, facilitated by iron reduction and methanogenesis, and the importance of microbial communities in moderating such vulnerability.« less

Effects of tillage practice on soil structure, N2O emissions and economics in cereal production under current socio-economic conditions in central Bosnia and Herzegovina

PubMed Central

Sitaula, Bishal Kumar; Čustović, Hamid; Žurovec, Jasminka; Dörsch, Peter

2017-01-01

Conservation tillage is expected to have a positive effect on soil physical properties, soil Carbon (C) storage, while reducing fuel, labour and machinery costs. However, reduced tillage could increase soil nitrous oxide (N2O) emissions and offset the expected gains from increased C sequestration. To date, conservation tillage is barely practiced or studied in Bosnia and Herzegovina (BH). Here, we report a field study on the short-term effects of reduced (RT) and no tillage (NT) on N2O emission dynamics, yield-scaled N2O emissions, soil structure and the economics of cereal production, as compared with conventional tillage (CT). The field experiment was conducted in the Sarajevo region on a clayey loam under typical climatic conditions for humid, continental BH. N2O emissions were monitored in a Maize-Barley rotation over two cropping seasons. Soil structure was studied at the end of the second season. In the much wetter 2014, N2O emission were in the order of CT > RT > NT, while in the drier 2015, the order was RT > CT > NT. The emission factors were within or slightly above the uncertainty range of the IPCC Tier 1 factor, if taking account for the N input from the cover crop (alfalfa) preceding the first experimental year. Saturated soils in spring, formation of soil crusts and occasional droughts adversely affected yields, particularly in the second year (barley). In 2014, yield-scaled N2O emissions ranged from 83.2 to 161.7 g N Mg-1 grain (corn) but were much greater in the second year due to crop failure (barley). RT had the smallest yield-scaled N2O emission in both years. NT resulted in economically inacceptable returns, due to the increased costs of weed control and low yields in both years. The reduced number of operations in RT reduced production costs and generated positive net returns. Therefore, RT could potentially provide agronomic and environmental benefits in crop production in BH. PMID:29117229

Effects of tillage practice on soil structure, N2O emissions and economics in cereal production under current socio-economic conditions in central Bosnia and Herzegovina.

PubMed

Žurovec, Ognjen; Sitaula, Bishal Kumar; Čustović, Hamid; Žurovec, Jasminka; Dörsch, Peter

2017-01-01

Conservation tillage is expected to have a positive effect on soil physical properties, soil Carbon (C) storage, while reducing fuel, labour and machinery costs. However, reduced tillage could increase soil nitrous oxide (N2O) emissions and offset the expected gains from increased C sequestration. To date, conservation tillage is barely practiced or studied in Bosnia and Herzegovina (BH). Here, we report a field study on the short-term effects of reduced (RT) and no tillage (NT) on N2O emission dynamics, yield-scaled N2O emissions, soil structure and the economics of cereal production, as compared with conventional tillage (CT). The field experiment was conducted in the Sarajevo region on a clayey loam under typical climatic conditions for humid, continental BH. N2O emissions were monitored in a Maize-Barley rotation over two cropping seasons. Soil structure was studied at the end of the second season. In the much wetter 2014, N2O emission were in the order of CT > RT > NT, while in the drier 2015, the order was RT > CT > NT. The emission factors were within or slightly above the uncertainty range of the IPCC Tier 1 factor, if taking account for the N input from the cover crop (alfalfa) preceding the first experimental year. Saturated soils in spring, formation of soil crusts and occasional droughts adversely affected yields, particularly in the second year (barley). In 2014, yield-scaled N2O emissions ranged from 83.2 to 161.7 g N Mg-1 grain (corn) but were much greater in the second year due to crop failure (barley). RT had the smallest yield-scaled N2O emission in both years. NT resulted in economically inacceptable returns, due to the increased costs of weed control and low yields in both years. The reduced number of operations in RT reduced production costs and generated positive net returns. Therefore, RT could potentially provide agronomic and environmental benefits in crop production in BH.

Root chemistry and soil fauna, but not soil abiotic conditions explain the effects of plant diversity on root decomposition.

PubMed

Chen, Hongmei; Oram, Natalie J; Barry, Kathryn E; Mommer, Liesje; van Ruijven, Jasper; de Kroon, Hans; Ebeling, Anne; Eisenhauer, Nico; Fischer, Christine; Gleixner, Gerd; Gessler, Arthur; González Macé, Odette; Hacker, Nina; Hildebrandt, Anke; Lange, Markus; Scherer-Lorenzen, Michael; Scheu, Stefan; Oelmann, Yvonne; Wagg, Cameron; Wilcke, Wolfgang; Wirth, Christian; Weigelt, Alexandra

2017-11-01

Plant diversity influences many ecosystem functions including root decomposition. However, due to the presence of multiple pathways via which plant diversity may affect root decomposition, our mechanistic understanding of their relationships is limited. In a grassland biodiversity experiment, we simultaneously assessed the effects of three pathways-root litter quality, soil biota, and soil abiotic conditions-on the relationships between plant diversity (in terms of species richness and the presence/absence of grasses and legumes) and root decomposition using structural equation modeling. Our final structural equation model explained 70% of the variation in root mass loss. However, different measures of plant diversity included in our model operated via different pathways to alter root mass loss. Plant species richness had a negative effect on root mass loss. This was partially due to increased Oribatida abundance, but was weakened by enhanced root potassium (K) concentration in more diverse mixtures. Equally, grass presence negatively affected root mass loss. This effect of grasses was mostly mediated via increased root lignin concentration and supported via increased Oribatida abundance and decreased root K concentration. In contrast, legume presence showed a net positive effect on root mass loss via decreased root lignin concentration and increased root magnesium concentration, both of which led to enhanced root mass loss. Overall, the different measures of plant diversity had contrasting effects on root decomposition. Furthermore, we found that root chemistry and soil biota but not root morphology or soil abiotic conditions mediated these effects of plant diversity on root decomposition.

Light Sheet Tomography (LST) for in situ imaging of plant roots.

PubMed

Yang, Zhengyi; Downie, Helen; Rozbicki, Emil; Dupuy, Lionel X; MacDonald, Michael P

2013-07-15

The production of crops capable of efficient nutrient use is essential for addressing the problem of global food security. The ability of a plant's root system to interact with the soil micro-environment determines how effectively it can extract water and nutrients. In order to assess this ability and develop the fast and cost effective phenotyping techniques which are needed to establish efficient root systems, in situ imaging in soil is required. To date this has not been possible due to the high density of scatterers and absorbers in soil or because other growth substrates do not sufficiently model the heterogeneity of a soil's microenvironment. We present here a new form of light sheet imaging with novel transparent soil containing refractive index matched particles. This imaging method does not rely on fluorescence, but relies solely on scattering from root material. We term this form of imaging Light Sheet Tomography (LST). We have tested LST on a range of materials and plant roots in transparent soil and gel. Due to the low density of root structures, i.e. relatively large spaces between adjacent roots, long-term monitoring of lettuce root development in situ with subsequent quantitative analysis was achieved.

Effects of biochar on dechlorination of hexachlorobenzene and the bacterial community in paddy soil.

PubMed

Song, Yang; Bian, Yongrong; Wang, Fang; Herzberger, Anna; Yang, Xinglun; Gu, Chenggang; Jiang, Xin

2017-11-01

Anaerobic reductive dechlorination is an important degradation pathway for chlorinated organic contaminants in paddy soil. This study investigated the effects of amending paddy soil with wheat straw biochar on both the dechlorination of hexachlorobenzene (HCB), a typical highly chlorinated contaminant, and on the structure of soil bacteria communities. Soil amendment of 0.1% biochar did not significantly affect the dechlorination of HCB in the soil. However, biochar amendment at higher application levels (5%) stimulated the dechlorination of HCB in the first month of anaerobic incubation and inhibited the dechlorination of HCB after that period. The stimulation effect may be ascribed to the graphite carbon and carbon-centered persistent radicals, which are redox active, in biochar. The inhibiting effect could be partly ascribed to the reduced bioavailability of HCB in biochar-amended soils. High-throughput sequencing revealed that the amendment of biochar changed the soil bacterial community structure but not the bacterial abundances and diversities. The relative abundance of Dehalococcoidaceae in the tested soils showed a significant relationship with the dechlorination percentages of HCB, indicating that Dehalococcoidaceae may be the main HCB-dechlorinating bacteria in the studied paddy soil. The results indicated that low application levels of biochar did not affect the dechlorination of HCB in the paddy soil, while high application levels of biochar mainly inhibited the dechlorination of HCB due to the reduced bioavailability of HCB and the reduced abundances of certain dechlorinating bacteria in the biochar-amended paddy soil. Copyright © 2017 Elsevier Ltd. All rights reserved.

Soil Water Retention as Indicator for Soil Physical Quality - Examples from Two SoilTrEC European Critical Zone Observatories

NASA Astrophysics Data System (ADS)

Rousseva, Svetla; Kercheva, Milena; Shishkov, Toma; Dimitrov, Emil; Nenov, Martin; Lair, Georg J.; Moraetis, Daniel

2014-05-01

Soil water retention is of primary importance for majority of soil functions. The characteristics derived from Soil Water Retention Curve (SWRC) are directly related to soil structure and soil water regime and can be used as indicators for soil physical quality. The aim of this study is to present some parameters and relationships based on the SWRC data from the soil profiles characterising the European SoilTrEC Critical Zone Observatories Fuchsenbigl and Koiliaris. The studied soils are representative for highly productive soils managed as arable land in the frame of soil formation chronosequence at "Marchfeld" (Fuchsenbigl CZO), Austria and heavily impacted soils during centuries through intensive grazing and farming, under severe risk of desertification in context of climatic and lithological gradient at Koiliaris, Crete, Greece. Soil water retention at pF ≤ 2.52 was determined using the undisturbed soil cores (100 cm3 and 50 cm3) by a suction plate method. Water retention at pF = 4.2 was determined by a membrane press method and at pF ≥ 5.6 - by adsorption of water vapour at controlled relative humidity, both using ground soil samples. The soil physical quality parameter (S-parameter) was defined as the slope of the water retention curve at its inflection point (Dexter, 2006), determined with the obtained parameters of van Genuhten (1980) water retention equation. The S-parameter values were categorised to assess soil physical quality as follows: S < 0.020 very poor, 0.020 ≤ S < 0.035 poor, 0.035 ≤ S < 0.050 good, S ≥ 0.050 very good (Dexter, 2004). The results showed that most of the studied topsoil horizons have good physical quality according to both the S-parameter and the Plant-Available Water content (PAW), with the exception of the soils from croplands at CZO Fuxenbigl (F4, F5) which are with poor soil structure. The link between the S-parameter and the indicator of soil structure stability (water stable soil aggregates with size 1-3 mm) is not well defined. The scattering is due to high values of S in subsoil, which does not always coincide with favourable physical properties, as it can be seen from the relationship with the PAW content. It was found that values of S ≥ 0.05 correspond to PAW > 20 % vol. in the topsoil horizons. The high values of S in subsoil horizons are due to the low PAW and restrict the application of the S categories in these cases. Well defined links are found between the PAW content and the S-parameter when the data from the topsoil horizons are grouped in 2 groups according to the ratio between air-filled pores (at pF 2.52) and plant available water: <2 and ≥ 2. The authors acknowledge gratefully the European Commission Research Directorate-General for funding the SoilTrEC project (Contract No 244118) under its 7th Framework Programme.

Performance-based seismic assessment of skewed bridges with and without considering soil-foundation interaction effects for various site classes

NASA Astrophysics Data System (ADS)

Ghotbi, Abdoul R.

2014-09-01

The seismic behavior of skewed bridges has not been well studied compared to straight bridges. Skewed bridges have shown extensive damage, especially due to deck rotation, shear keys failure, abutment unseating and column-bent drift. This research, therefore, aims to study the behavior of skewed and straight highway overpass bridges both with and without taking into account the effects of Soil-Structure Interaction (SSI) due to near-fault ground motions. Due to several sources of uncertainty associated with the ground motions, soil and structure, a probabilistic approach is needed. Thus, a probabilistic methodology similar to the one developed by the Pacific Earthquake Engineering Research Center (PEER) has been utilized to assess the probability of damage due to various levels of shaking using appropriate intensity measures with minimum dispersions. The probabilistic analyses were performed for various bridge configurations and site conditions, including sand ranging from loose to dense and clay ranging from soft to stiff, in order to evaluate the effects. The results proved a considerable susceptibility of skewed bridges to deck rotation and shear keys displacement. It was also found that SSI had a decreasing effect on the damage probability for various demands compared to the fixed-base model without including SSI. However, deck rotation for all types of the soil and also abutment unseating for very loose sand and soft clay showed an increase in damage probability compared to the fixed-base model. The damage probability for various demands has also been found to decrease with an increase of soil strength for both sandy and clayey sites. With respect to the variations in the skew angle, an increase in skew angle has had an increasing effect on the amplitude of the seismic response for various demands. Deck rotation has been very sensitive to the increase in the skew angle; therefore, as the skew angle increased, the deck rotation responded accordingly. Furthermore, abutment unseating showed an increasing trend due to an increase in skew angle for both fixed-base and SSI models.

Predicting effects of climate change on the composition and function of soil microbial communities

NASA Astrophysics Data System (ADS)

Dubinsky, E.; Brodie, E.; Myint, C.; Ackerly, D.; van Nostrand, J.; Bird, J.; Zhou, J.; Andersen, G.; Firestone, M.

2008-12-01

Complex soil microbial communities regulate critical ecosystem processes that will be altered by climate change. A critical step towards predicting the impacts of climate change on terrestrial ecosystems is to determine the primary controllers of soil microbial community composition and function, and subsequently evaluate climate change scenarios that alter these controllers. We surveyed complex soil bacterial and archaeal communities across a range of climatic and edaphic conditions to identify critical controllers of soil microbial community composition in the field and then tested the resulting predictions using a 2-year manipulation of precipitation and temperature using mesocosms of California annual grasslands. Community DNA extracted from field soils sampled from six different ecosystems was assayed for bacterial and archaeal communities using high-density phylogenetic microarrays as well as functional gene arrays. Correlations among the relative abundances of thousands of microbial taxa and edaphic factors such as soil moisture and nutrient content provided a basis for predicting community responses to changing soil conditions. Communities of soil bacteria and archaea were strongly structured by single environmental predictors, particularly variables related to soil water. Bacteria in the Actinomycetales and Bacilli consistently demonstrated a strong negative response to increasing soil moisture, while taxa in a greater variety of lineages responded positively to increasing soil moisture. In the climate change experiment, overall bacterial community structure was impacted significantly by total precipitation but not by plant species. Changes in soil moisture due to decreased rainfall resulted in significant and predictable alterations in community structure. Over 70% of the bacterial taxa in common with the cross-ecosystem study responded as predicted to altered precipitation, with the most conserved response from Actinobacteria. The functional consequences of these predictable changes in community composition were measured with functional arrays that detect genes involved in the metabolism of carbon, nitrogen and other elements. The response of soil microbial communities to altered precipitation can be predicted from the distribution of microbial taxa across moisture gradients.

Long Term Effects of Poultry Litter on Soil Physical and Chemical Properties in Cotton Plots

NASA Technical Reports Server (NTRS)

Surrency, J.; Tsegaye, T.; Coleman, T.; Fahsi, A.; Reddy, C.

1998-01-01

Poultry litter and compost can alter the moisture holding capacity of a soil. These organic materials can also increase the nutrient status of a soil during the decomposition process by microbial actions. The objective of this study was to evaluate the effect of poultry litter and compost on the dielectric constant and moisture holding capacity of soil. The Delta-T theta-probe was used to measure volumetric soil water content and the apparent dielectric constant of the upper 6-cm of the soil profile. Soil texture, pH, and organic matter were also determined for each plot. Results of these analyses indicated that the pH of the soil ranged from 6.4 to 7.7 and the volumetric soil moisture content ranged from 0.06 to 0.18 cu m/cu m for the upper 6-cm of the soil profile. The effect of poultry litter and compost on soil properties resulted in an increase in the volumetric moisture content and dielectric constant of the soil due to the improvement of the soil structure.

Structural changes of green roof growing substrate layer studied by X-ray CT

NASA Astrophysics Data System (ADS)

Jelinkova, Vladimira; Sacha, Jan; Dohnal, Michal; Snehota, Michal

2017-04-01

Increasing interest in green infrastructure linked with newly implemented legislation/rules/laws worldwide opens up research potential for field of soil hydrology. A better understanding of function of engineered soils involved in green infrastructure solutions such as green roofs or rain garden is needed. A soil layer is considered as a highly significant component of the aforesaid systems. In comparison with a natural soil, the engineered soil is assumed to be the more challenging case due to rapid structure changes early stages after its build-up. The green infrastructure efficiency depends on the physical and chemical properties of the soil, which are, in the case of engineered soils, a function of its initial composition and subsequent soil formation processes. The project presented in this paper is focused on fundamental processes in the relatively thick layer of engineered soil. The initial structure development, during which the pore geometry is altered by the growth of plant roots, water influx, solid particles translocation and other soil formation processes, is investigated with the help of noninvasive imaging technique  X-ray computed tomography. The soil development has been studied on undisturbed soil samples taken periodically from green roof test system during early stages of its life cycle. Two approaches and sample sizes were employed. In the first approach, undisturbed samples (volume of about 63 cm3) were taken each time from the test site and scanned by X-ray CT. In the second approach, samples (volume of about 630 cm3) were permanently installed at the test site and has been repeatedly removed to perform X-ray CT imaging. CT-derived macroporosity profiles reveal significant temporal changes of soil structure. Clogging of pores by fine particles and fissures development are two most significant changes that would affect the green roof system efficiency. This work has been supported by the Ministry of Education, Youth and Sports within National Sustainability Programme I, project number LO1605 and with financial support from the Czech Science Foundation under project number GAČR 17-21011S.

Effects of Spatial Variability of Soil Properties on the Triggering of Rainfall-Induced Shallow Landslides

NASA Astrophysics Data System (ADS)

Fan, Linfeng; Lehmann, Peter; Or, Dani

2015-04-01

Naturally-occurring spatial variations in soil properties (e.g., soil depth, moisture, and texture) affect key hydrological processes and potentially the mechanical response of soil to hydromechanical loading (relative to the commonly-assumed uniform soil mantle). We quantified the effects of soil spatial variability on the triggering of rainfall-induced shallow landslides at the hillslope- and catchment-scales, using a physically-based landslide triggering model that considers interacting soil columns with mechanical strength thresholds (represented by the Fiber Bundle Model). The spatial variations in soil properties are represented as Gaussian random distributions and the level of variation is characterized by the coefficient of variation and correlation lengths of soil properties (i.e., soil depth, soil texture and initial water content in this study). The impacts of these spatial variations on landslide triggering characteristics were measured by comparing the times to triggering and landslide volumes for heterogeneous soil properties and homogeneous cases. Results at hillslope scale indicate that for spatial variations of an individual property (without cross correlation), the increasing of coefficient of variation introduces weak spots where mechanical damage is accelerated and leads to earlier onset of landslide triggering and smaller volumes. Increasing spatial correlation length of soil texture and initial water content also induces early landslide triggering and small released volumes due to the transition of failure mode from brittle to ductile failure. In contrast, increasing spatial correlation length of soil depth "reduces" local steepness and postpones landslide triggering. Cross-correlated soil properties generally promote landslide initiation, but depending on the internal structure of spatial distribution of each soil property, landslide triggering may be reduced. The effects of cross-correlation between initial water content and soil texture were investigated in detail at the catchment scale by incorporating correlations of both variables with topography. Results indicate that the internal structure of the spatial distribution of each soil property together with their interplays determine the overall performance of the coupled spatial variability. This study emphasizes the importance of both the randomness and spatial structure of soil properties on landslide triggering and characteristics.

Multi-scale sensitivity analysis of pile installation using DEM

NASA Astrophysics Data System (ADS)

Esposito, Ricardo Gurevitz; Velloso, Raquel Quadros; , Eurípedes do Amaral Vargas, Jr.; Danziger, Bernadete Ragoni

2017-12-01

The disturbances experienced by the soil due to the pile installation and dynamic soil-structure interaction still present major challenges to foundation engineers. These phenomena exhibit complex behaviors, difficult to measure in physical tests and to reproduce in numerical models. Due to the simplified approach used by the discrete element method (DEM) to simulate large deformations and nonlinear stress-dilatancy behavior of granular soils, the DEM consists of an excellent tool to investigate these processes. This study presents a sensitivity analysis of the effects of introducing a single pile using the PFC2D software developed by Itasca Co. The different scales investigated in these simulations include point and shaft resistance, alterations in porosity and stress fields and particles displacement. Several simulations were conducted in order to investigate the effects of different numerical approaches showing indications that the method of installation and particle rotation could influence greatly in the conditions around the numerical pile. Minor effects were also noted due to change in penetration velocity and pile-soil friction. The difference in behavior of a moving and a stationary pile shows good qualitative agreement with previous experimental results indicating the necessity of realizing a force equilibrium process prior to any load-test to be simulated.

Multi-scale sensitivity analysis of pile installation using DEM

NASA Astrophysics Data System (ADS)

Esposito, Ricardo Gurevitz; Velloso, Raquel Quadros; , Eurípedes do Amaral Vargas, Jr.; Danziger, Bernadete Ragoni

2018-07-01

The disturbances experienced by the soil due to the pile installation and dynamic soil-structure interaction still present major challenges to foundation engineers. These phenomena exhibit complex behaviors, difficult to measure in physical tests and to reproduce in numerical models. Due to the simplified approach used by the discrete element method (DEM) to simulate large deformations and nonlinear stress-dilatancy behavior of granular soils, the DEM consists of an excellent tool to investigate these processes. This study presents a sensitivity analysis of the effects of introducing a single pile using the PFC2D software developed by Itasca Co. The different scales investigated in these simulations include point and shaft resistance, alterations in porosity and stress fields and particles displacement. Several simulations were conducted in order to investigate the effects of different numerical approaches showing indications that the method of installation and particle rotation could influence greatly in the conditions around the numerical pile. Minor effects were also noted due to change in penetration velocity and pile-soil friction. The difference in behavior of a moving and a stationary pile shows good qualitative agreement with previous experimental results indicating the necessity of realizing a force equilibrium process prior to any load-test to be simulated.

Interactions in Natural Colloid Systems "Biosolids" - Soil and Plant

NASA Astrophysics Data System (ADS)

Kalinichenko, Kira V.; Nikovskaya, Galina N.; Ulberg, Zoya R.

2016-04-01

The "biosolids" are complex biocolloid system arising in huge amounts (mln tons per year) from biological municipal wastewater treatment. These contain clusters of nanoparticles of heavy metal compounds (in slightly soluble or unsoluble forms, such as phosphates, sulphates, carbonates, hydroxides, and etc.), cells, humic substances and so on, involved in exopolysaccharides (EPS) net matrix. One may consider that biosolids are the natural nanocomposite. Due to the presence of nitrogen, phosphorus, potassium and other macro- and microelements (heavy metals), vitamins, aminoacids, etc., the biosolids are a depot of bioelements for plant nutrition. Thus, it is generally recognized that most rationally to utilize them for land application. For this purpose the biocolloid process was developed in biosolids system by initiation of microbial vital ability followed by the synthesis of EPS, propagation of ecologically important microorganisms, loosening of the structure and weakening of the coagulation contacts between biosolids colloids, but the structure integrity maintaining [1,2]. It was demonstrated that the applying of biosolids with metabolizing microorganisms to soil provided the improving soil structure, namely the increasing of waterstable aggregates content (70% vs. 20%). It occurs due to flocculation ability of biosolids EPS. The experimental modelling of mutual interactions in systems of soils - biosolids (with metabolizing microorganisms) were realized and their colloid and chemical mechanisms were formulated [3]. As it is known, the most harmonious plant growth comes at a prolonged entering of nutrients under the action of plant roots exudates which include pool of organic acids and polysaccharides [4]. Special investigations showed that under the influence of exudates excreted by growing plants, the biosolids microelements can release gradually from immobilized state into environment and are able to absorb by plants. Thus, the biosolids can serve as an active component of soil substrate. Soil enrichment with biosolids nanocomposite resulted in an improving of its structures, a faster growth of plants and substantial harvest increase, as compared with control (unfertilized) soil. 1. Kalinichenko KV, Nikovskaya GN, and Ulberg ZR (2012) Bioextraction of heavy metals from colloidal sludge systems. Colloid Journ. 74(5): 553-557. 2. Kalinichenko KV, Nikovskaya GN, and Ulberg ZR (2013) Changes in the surface properties and stability of biocolloids of a sludge system upon extraction of heavy metals. Colloid Journ. 75(3): 274-278. 3. Nikovskaya GN, et al (2006) The influence of different reclamation agents and microorganisms on the aggregative stability of the colloidal fraction of meadow chernozem soil. Colloid Journal. 68 (3): 345-349. 4. Dakora FD, Phillips DA (2002) Root exudates as mediators of mineral acquisition in low-nutrient environments. Plant and Soil. 1: 35-47.

Soil moisture in sessile oak forest gaps

NASA Astrophysics Data System (ADS)

Zagyvainé Kiss, Katalin Anita; Vastag, Viktor; Gribovszki, Zoltán; Kalicz, Péter

2015-04-01

By social demands are being promoted the aspects of the natural forest management. In forestry the concept of continuous forest has been an accepted principle also in Hungary since the last decades. The first step from even-aged stand to continuous forest can be the forest regeneration based on gap cutting, so small openings are formed in a forest due to forestry interventions. This new stand structure modifies the hydrological conditions for the regrowth. Without canopy and due to the decreasing amounts of forest litter the interception is less significant so higher amount of precipitation reaching the soil. This research focuses on soil moisture patterns caused by gaps. The spatio-temporal variability of soil water content is measured in gaps and in surrounding sessile oak (Quercus petraea) forest stand. Soil moisture was determined with manual soil moisture meter which use Time-Domain Reflectometry (TDR) technology. The three different sizes gaps (G1: 10m, G2: 20m, G3: 30m) was opened next to Sopron on the Dalos Hill in Hungary. First, it was determined that there is difference in soil moisture between forest stand and gaps. Second, it was defined that how the gap size influences the soil moisture content. To explore the short term variability of soil moisture, two 24-hour (in growing season) and a 48-hour (in dormant season) field campaign were also performed in case of the medium-sized G2 gap along two/four transects. Subdaily changes of soil moisture were performed. The measured soil moisture pattern was compared with the radiation pattern. It was found that the non-illuminated areas were wetter and in the dormant season the subdaily changes cease. According to our measurements, in the gap there is more available water than under the forest stand due to the less evaporation and interception loss. Acknowledgements: The research was supported by TÁMOP-4.2.2.A-11/1/KONV-2012-0004 and AGRARKLIMA.2 VKSZ_12-1-2013-0034.

Transport of four pharmaceuticals in different horizons of three soil types

NASA Astrophysics Data System (ADS)

Kodesova, Radka; Svatkova, Paula; Klement, Ales; Jaksik, Ondrej; Golovko, Oksana; Fer, Miroslav; Kocarek, Martin; Nikodem, Antonin; Grabic, Roman

2015-04-01

Soil structure, which varies in different soil types and the horizons of these soil types, has a significant impact on water flow and contaminant transport in soils. Transport of many contaminants is in addition strongly influenced by their sorption on soil particles. Transport of four pharmaceuticals (sulfamethoxazole, trimethoprim, atenolol and carbamazepine) was studied in soil columns (a diameter of 10.5 cm and a height of 13 cm) taken from all diagnostic horizons of three different soil types (Haplic Luvisol, Greyic Phaeozem and Haplic Cambisol). The irrigation by water contaminated by a mixture of all four compounds followed by ponding infiltration of distilled water was simulated and water outflow and solute concentrations from the bottom of the soil sample was monitored in time. The highest infiltration rates were observed for soil samples from the Bt horizons of the Greyic Phaeozem that exhibited prismatic structure, followed by rates observed in the Ap horizons of the Haplic Luvisol, Greyic Phaeozem and Haplic Cambisol (due to their granular soil structure and presence of root channels). The lowest infiltration rate was measured for the Bw horizon of the Haplic Cambisol, which had a poorly developed soil structure and a low fraction of macropores. Compound discharge was however also highly affected by their sorption on solids. The highest mobility was observed for sulfamethoxazole followed by carbamazepine atenolol and trimethoprim, which corresponds to measured sorption isotherms. Mobility of ionizable compounds in different soil samples was influenced by pH (i.e. degree and form of their ionization) and sites available for absorption. Mobility of sulfamethoxazole decreased with decreasing pH (i.e. the largest sorption measured in horizons of the Haplic Cambisol). While mobility of atenolol and trimethoprim decreased with increasing base cation saturation, and with increasing organic matter content for carbamazepine. As result of both affects (i.e. soil structure and compounds' sorption) the highest discharge of all compounds was observed from the Ap horizon of the Greyic Phaeozem followed by compound discharge from the C horizons of the Greyic Phaeozem and the C and Bt2 horizons of the Haplic Luvisol. Acknowledgement: The authors acknowledge the financial support of the Czech Science Foundation (Project No. 13-12477S, Transport of pharmaceuticals in soils). References: Kodesova, R., Grabic, R., Kocarek, M., Klement, A., Golovko, O., Fer, M., Nikodem, A., Jaksik, O., Pharmaceuticals' sorptions relative to properties of thirteen different soils. Science of the Total Environment 511 (2015) 435-443.

Microbial Populations of Stony Meteorites: Substrate Controls on First Colonizers.

PubMed

Tait, Alastair W; Gagen, Emma J; Wilson, Siobhan A; Tomkins, Andrew G; Southam, Gordon

2017-01-01

Finding fresh, sterilized rocks provides ecologists with a clean slate to test ideas about first colonization and the evolution of soils de novo. Lava has been used previously in first colonizer studies due to the sterilizing heat required for its formation. However, fresh lava typically falls upon older volcanic successions of similar chemistry and modal mineral abundance. Given enough time, this results in the development of similar microbial communities in the newly erupted lava due to a lack of contrast between the new and old substrates. Meteorites, which are sterile when they fall to Earth, provide such contrast because their reduced and mafic chemistry commonly differs to the surfaces on which they land; thus allowing investigation of how community membership and structure respond to this new substrate over time. We conducted 16S rRNA gene analysis on meteorites and soil from the Nullarbor Plain, Australia. We found that the meteorites have low species richness and evenness compared to soil sampled from directly beneath each meteorite. Despite the meteorites being found kilometers apart, the community structure of each meteorite bore more similarity to those of other meteorites (of similar composition) than to the community structure of the soil on which it resided. Meteorites were dominated by sequences that affiliated with the Actinobacteria with the major Operational Taxonomic Unit (OTU) classified as Rubrobacter radiotolerans. Proteobacteria and Bacteroidetes were the next most abundant phyla. The soils were also dominated by Actinobacteria but to a lesser extent than the meteorites. We also found OTUs affiliated with iron/sulfur cycling organisms Geobacter spp. and Desulfovibrio spp. This is an important finding as meteorites contain abundant metal and sulfur for use as energy sources. These ecological findings demonstrate that the structure of the microbial community in these meteorites is controlled by the substrate, and will not reach homeostasis with the Nullarbor community, even after ca. 35,000 years. Our findings show that meteorites provide a unique, sterile substrate with which to test ideas relating to first-colonizers. Although meteorites are colonized by microorganisms, the microbial population is unlikely to match the community of the surrounding soil on which they fall.

Microbial Populations of Stony Meteorites: Substrate Controls on First Colonizers

PubMed Central

Tait, Alastair W.; Gagen, Emma J.; Wilson, Siobhan A.; Tomkins, Andrew G.; Southam, Gordon

2017-01-01

Finding fresh, sterilized rocks provides ecologists with a clean slate to test ideas about first colonization and the evolution of soils de novo. Lava has been used previously in first colonizer studies due to the sterilizing heat required for its formation. However, fresh lava typically falls upon older volcanic successions of similar chemistry and modal mineral abundance. Given enough time, this results in the development of similar microbial communities in the newly erupted lava due to a lack of contrast between the new and old substrates. Meteorites, which are sterile when they fall to Earth, provide such contrast because their reduced and mafic chemistry commonly differs to the surfaces on which they land; thus allowing investigation of how community membership and structure respond to this new substrate over time. We conducted 16S rRNA gene analysis on meteorites and soil from the Nullarbor Plain, Australia. We found that the meteorites have low species richness and evenness compared to soil sampled from directly beneath each meteorite. Despite the meteorites being found kilometers apart, the community structure of each meteorite bore more similarity to those of other meteorites (of similar composition) than to the community structure of the soil on which it resided. Meteorites were dominated by sequences that affiliated with the Actinobacteria with the major Operational Taxonomic Unit (OTU) classified as Rubrobacter radiotolerans. Proteobacteria and Bacteroidetes were the next most abundant phyla. The soils were also dominated by Actinobacteria but to a lesser extent than the meteorites. We also found OTUs affiliated with iron/sulfur cycling organisms Geobacter spp. and Desulfovibrio spp. This is an important finding as meteorites contain abundant metal and sulfur for use as energy sources. These ecological findings demonstrate that the structure of the microbial community in these meteorites is controlled by the substrate, and will not reach homeostasis with the Nullarbor community, even after ca. 35,000 years. Our findings show that meteorites provide a unique, sterile substrate with which to test ideas relating to first-colonizers. Although meteorites are colonized by microorganisms, the microbial population is unlikely to match the community of the surrounding soil on which they fall. PMID:28713354

Multivariate functions for predicting the sorption of 2,4,6-trinitrotoluene (TNT) and 1,3,5-trinitro-1,3,5-tricyclohexane (RDX) among taxonomically distinct soils.

PubMed

Katseanes, Chelsea K; Chappell, Mark A; Hopkins, Bryan G; Durham, Brian D; Price, Cynthia L; Porter, Beth E; Miller, Lesley F

2016-11-01

After nearly a century of use in numerous munition platforms, TNT and RDX contamination has turned up largely in the environment due to ammunition manufacturing or as part of releases from low-order detonations during training activities. Although the basic knowledge governing the environmental fate of TNT and RDX are known, accurate predictions of TNT and RDX persistence in soil remain elusive, particularly given the universal heterogeneity of pedomorphic soil types. In this work, we proposed a new solution for modeling the sorption and persistence of these munition constituents as multivariate mathematical functions correlating soil attribute data over a variety of taxonomically distinct soil types to contaminant behavior, instead of a single constant or parameter of a specific absolute value. To test this idea, we conducted experiments measuring the sorption of TNT and RDX on taxonomically different soil types that were extensively physical and chemically characterized. Statistical decomposition of the log-transformed, and auto-scaled soil characterization data using the dimension-reduction technique PCA (principal component analysis) revealed a strong latent structure based in the multiple pairwise correlations among the soil properties. TNT and RDX sorption partitioning coefficients (KD-TNT and KD-RDX) were regressed against this latent structure using partial least squares regression (PLSR), generating a 3-factor, multivariate linear functions. Here, PLSR models predicted KD-TNT and KD-RDX values based on attributes contributing to endogenous alkaline/calcareous and soil fertility criteria, respectively, exhibited among the different soil types: We hypothesized that the latent structure arising from the strong covariance of full multivariate geochemical matrix describing taxonomically distinguished soil types may provide the means for potentially predicting complex phenomena in soils. The development of predictive multivariate models tuned to a local soil's taxonomic designation would have direct benefit to military range managers seeking to anticipate the environmental risks of training activities on impact sites. Published by Elsevier Ltd.

An experimental investigation to characterise soil macroporosity under different land use and land covers of northeast India

NASA Astrophysics Data System (ADS)

Shougrakpam, Sangeeta; Sarkar, Rupak; Dutta, Subashisa

2010-10-01

Saturated macropore flow is the dominant hydrological process in tropical and subtropical hilly watersheds of northeast India. The process of infiltration into saturated macroporous soils is primarily controlled by size, network, density, connectivity, saturation of surrounding soil matrix, and depthwise distribution of macropores. To understand the effects of local land use, land cover and management practices on soil macroporosity, colour dye infiltration experiments were conducted with ten soil columns (25 × 25 × 50 cm) collected from different watersheds of the region under similar soil and agro-climatic zones. The sampling sites included two undisturbed forested hillslopes, two conventionally cultivated paddy fields, two forest lands abandoned after Jhum cultivation, and two paddy fields, one pineapple plot and one banana plot presently under active cultivation stage of the Jhum cycle. Digital image analyses of the obtained dye patterns showed that the infiltration patterns differed significantly for different sites with varying land use, land cover, and cultivation practices. Undisturbed forest soils showed high degree of soil macroporosity throughout the soil profile, paddy fields revealed sealing of macropores at the topsoil due to hard pan formation, and Jhum cultivated plots showed disconnected subsoil macropores. The important parameters related to soil macropores such as maximum and average size of macropores, number of active macropores, and depthwise distribution of macropores were estimated to characterise the soil macroporosity for the sites. These experimentally derived quantitative data of soil macroporosity can have wide range of applications in the region such as water quality monitoring and groundwater pollution assessment due to preferential leaching of solutes and pesticides, study of soil structural properties and infiltration behaviour of soils, investigation of flash floods in rivers, and hydrological modelling of the watersheds.

Analysis of aggregate pier systems for stabilization of subgrade settlement.

DOT National Transportation Integrated Search

2014-12-01

Every year, ODOT undertakes numerous pavement patching/resurfacing projects to repair pavement : distress and structural failure due to soft and/or organic soils constituting the subgrade. Other than the : temporary solution of patching/resurfacing, ...

Field study of an integral backwall bridge : final report.

DOT National Transportation Integrated Search

1996-01-01

Integral bridges offer reduced maintenance expenditures, primarily due to the elimination of deck expansion joints. The design of an integral bridge, however, is complicated by the soil-structure interaction associated with thermal movements. It has ...

Quantification of spatial distribution and spread of bacteria in soil at microscale

NASA Astrophysics Data System (ADS)

Juyal, Archana; Eickhorst, Thilo; Falconer, Ruth; Baveye, Philippe; Otten, Wilfred

2015-04-01

Soil bacteria play an essential role in functioning of ecosystems and maintaining of biogeochemical cycles. Soil is a complex heterogeneous environment comprising of highly variable and dynamic micro-habitats that have significant impacts on the growth and activity of resident microbiota including bacteria and fungi. Bacteria occupy a very small portion of available pore space in soil which demonstrates that their spatial arrangement in soil has a huge impact on the contact to their target and on the way they interact to carry out their functions. Due to limitation of techniques, there is scant information on spatial distribution of indigenous or introduced bacteria at microhabitat scale. There is a need to understand the interaction between soil structure and microorganisms including fungi for ecosystem-level processes such as carbon sequestration and improving the predictive models for soil management. In this work, a combination of techniques was used including X-ray CT to characterize the soil structure and in-situ detection via fluorescence microscopy to visualize and quantify bacteria in soil thin sections. Pseudomonas fluorescens bacteria were introduced in sterilized soil of aggregate size 1-2 mm and packed at bulk-densities 1.3 g cm-3 and 1.5 g cm-3. A subset of samples was fixed with paraformaldehyde and subsequently impregnated with resin. DAPI and fluorescence in situ hybridization (FISH) were used to visualize bacteria in thin sections of soil cores by epifluorescence microscopy to enumerate spatial distribution of bacteria in soil. The pore geometry of soil was quantified after X-ray microtomography scanning. The distribution of bacteria introduced locally reduced significantly (P

Determination of Soil Moisture Content using Laboratory Experimental and Field Electrical Resistivity Values

NASA Astrophysics Data System (ADS)

Hazreek, Z. A. M.; Rosli, S.; Fauziah, A.; Wijeyesekera, D. C.; Ashraf, M. I. M.; Faizal, T. B. M.; Kamarudin, A. F.; Rais, Y.; Dan, M. F. Md; Azhar, A. T. S.; Hafiz, Z. M.

2018-04-01

The efficiency of civil engineering structure require comprehensive geotechnical data obtained from site investigation. In the past, conventional site investigation was heavily related to drilling techniques thus suffer from several limitations such as time consuming, expensive and limited data collection. Consequently, this study presents determination of soil moisture content using laboratory experimental and field electrical resistivity values (ERV). Field and laboratory electrical resistivity (ER) test were performed using ABEM SAS4000 and Nilsson400 soil resistance meter. Soil sample used for resistivity test was tested for characterization test specifically on particle size distribution and moisture content test according to BS1377 (1990). Field ER data was processed using RES2DINV software while laboratory ER data was analyzed using SPSS and Excel software. Correlation of ERV and moisture content shows some medium relationship due to its r = 0.506. Moreover, coefficient of determination, R2 analyzed has demonstrate that the statistical correlation obtain was very good due to its R2 value of 0.9382. In order to determine soil moisture content based on statistical correlation (w = 110.68ρ-0.347), correction factor, C was established through laboratory and field ERV given as 19.27. Finally, this study has shown that soil basic geotechnical properties with particular reference to water content was applicably determined using integration of laboratory and field ERV data analysis thus able to compliment conventional approach due to its economic, fast and wider data coverage.

Grassland to woodland transitions: Dynamic response of microbial community structure and carbon use patterns

NASA Astrophysics Data System (ADS)

Creamer, Courtney A.; Filley, Timothy R.; Boutton, Thomas W.; Rowe, Helen I.

2016-06-01

Woodland encroachment into grasslands is a globally pervasive phenomenon attributed to land use change, fire suppression, and climate change. This vegetation shift impacts ecosystem services such as ground water allocation, carbon (C) and nutrient status of soils, aboveground and belowground biodiversity, and soil structure. We hypothesized that woodland encroachment would alter microbial community structure and function and would be related to patterns in soil C accumulation. To address this hypothesis, we measured the composition and δ13C values of soil microbial phospholipids (PLFAs) along successional chronosequences from C4-dominated grasslands to C3-dominated woodlands (small discrete clusters and larger groves) spanning up to 134 years. Woodland development increased microbial biomass, soil C and nitrogen (N) concentrations, and altered microbial community composition. The relative abundance of gram-negative bacteria (cy19:0) increased linearly with stand age, consistent with decreases in soil pH and/or greater rhizosphere development and corresponding increases in C inputs. δ13C values of all PLFAs decreased with time following woody encroachment, indicating assimilation of woodland C sources. Among the microbial groups, fungi and actinobacteria in woodland soils selectively assimilated grassland C to a greater extent than its contribution to bulk soil. Between the two woodland types, microbes in the groves incorporated relatively more of the relict C4-C than those in the clusters, potentially due to differences in below ground plant C allocation and organo-mineral association. Changes in plant productivity and C accessibility (rather than C chemistry) dictated microbial C utilization in this system in response to shrub encroachment.

Experimental datasets on engineering properties of expansive soil treated with common salt.

PubMed

Durotoye, Taiwo O; Akinmusuru, Joseph O; Ogundipe, Kunle E

2018-06-01

Construction of highway pavements or high rise structures over the expansive soils are always problematic due to failures of volume change or swelling characteristic experienced in the water permeability of the soil. The data in this article represented summary of (Durotoye et al., 2016; Durotoye, 2016) [1], [2]. The data explored different percentages of sodium chloride as additive in stabilizing the engineering properties of expansive soil compared with other available stabilizer previously worked on. Experimental procedures carried out on expansive soil include: (Liquid limit, Plastic limit, Plasticity index, Shrinkage limit, Specific gravity Free swell index and Optimum water content) to determine the swelling parameters and (maximum dry density, California bearing ratio and unconfined compressive strength) to determine the strength parameters. The results of the experiment were presented in pie charts.

Use of treated wastewater in agriculture: effects on soil environment

NASA Astrophysics Data System (ADS)

Levy, Guy J.; Lado, Marcos

2014-05-01

Disposal of treated sewage, both from industrial and domestic origin (herein referred to as treated wastewater [TWW]), is often considered as an environmental hazard. However, in areas afflicted by water scarcity, especially in semi-arid and arid regions, where the future of irrigated agriculture (which produces approximately one third of crop yield and half the return from global crop production) is threatened by existing or expected shortage of fresh water, the use of TWW offers a highly effective and sustainable strategy to exploit a water resource. However, application of TWW to the soil is not free of risks both to organisms (e.g., crops, microbiota) and to the soil. Potential risks may include reduction in biological activity (including crop yield) due to elevated salinity and specific ion toxicity, migration of pollutants towards surface- and ground-water, and deterioration of soil structure. In recent years, new evidence about the possible negative impact of long-term irrigation with TWW on soil structure and physical and chemo-physical properties has emerged, thus putting the sustainability of irrigation with TWW in question. In this presentation, some aspects of the effects of long-term irrigation with TWW on soil properties are shown.

Sorption of Hydrophobic Organic Compounds on Natural Sorbents and Organoclays from Aqueous and Non-Aqueous Solutions: A Mini-Review

PubMed Central

Moyo, Francis; Tandlich, Roman; Wilhelmi, Brendan S.; Balaz, Stefan

2014-01-01

Renewed focus on the sorption of hydrophobic organic chemicals (HOCs) onto mineral surfaces and soil components is required due to the increased and wider range of organic pollutants being released into the environment. This mini-review examines the possibility of the contribution and mechanism of HOC sorption onto clay mineral sorbents such as kaolinite, and soil organic matter and the possible role of both in the prevention of environmental contamination by HOCs. Literature data indicates that certain siloxane surfaces can be hydrophobic. Therefore soils can retain HOCs even at low soil organic levels and the extent will depend on the structure of the pollutant and the type and concentration of clay minerals in the sorbent. Clay minerals are wettable by nonpolar solvents and so sorption of HOCs onto them from aqueous and non-aqueous solutions is possible. This is important for two reasons: firstly, the movement and remediation of soil environments will be a function of the concentration and type of clay minerals in the soil. Secondly, low-cost sorbents such as kaolinite and expandable clays can be added to soils or contaminated environments as temporary retention barriers for HOCs. Inorganic cations sorbed onto the kaolinite have a strong influence on the rate and extent of sorption of hydrophobic organic pollutants onto kaolinite. Structural sorbate classes that can be retained by the kaolinite matrix are limited by hydrogen bonding between hydroxyl groups of the octahedral alumosilicate sheet and the tetrahedral sheet with silicon. Soil organic carbon plays a key role in the sorption of HOCs onto soils, but the extent will be strongly affected by the structure of the organic soil matter and the presence of soot. Structural characterisation of soil organic matter in a particular soil should be conducted during a particular contamination event. Contamination by mining extractants and antibiotics will require renewed focus on the use of the QSAR approaches in the context of the sorption of HOCs onto clay minerals from aqueous and non-aqueous solutions. PMID:24821385

Canopy structural alterations to nitrogen functions of the soil microbial community in a Quercus virginiana forest

NASA Astrophysics Data System (ADS)

Moore, L. D.; Van Stan, J. T., II; Rosier, C. L.; Gay, T. E.; Wu, T.

2014-12-01

Forest canopy structure controls the timing, amount and chemical character of precipitation supply to soils through interception and drainage along crown surfaces. Yet, few studies have examined forest canopy structural connections to soil microbial communities (SMCs), and none have measured how this affects SMC N functions. The maritime Quercus virginiana Mill. (southern live oak) forests of St Catherine's Island, GA, USA provide an ideal opportunity to examine canopy structural alterations to SMCs and their functioning, as their throughfall varies substantially across space due to dense Tillandsia usneoides L. (spanish moss) mats bestrewn throughout. To examine the impact of throughfall variability on SMC N functions, we examined points along the canopy coverage continuum: large canopy gaps (0%), bare canopy (50-60%), and canopy of heavy T. usneoides coverage (>=85%). Five sites beneath each of the canopy cover types were monitored for throughfall water/ions and soil leachates chemistry for one storm each month over the growing period (7 months, Mar-2014 to Sep-2014) to compare with soil chemistry and SMC communities sampled every two months throughout that same period (Mar, May, Jul, Sep). DGGE and QPCR analysis of the N functioning genes (NFGs) to characterize the ammonia oxidizing bacterial (AOB-amoA), archaea (AOA-amoA), and ammonification (chiA) communities were used to determine the nitrification and decomposition potential of these microbial communities. PRS™-probes (Western Ag Innovations Inc., Saskatoon, Canada) were then used to determine the availability of NO3-N and NH4+N in the soils over a 6-week period to evaluate whether the differing NFG abundance and community structures resulted in altered N cycling.

Particle transport patterns of short-distance soil erosion by wind-driven rain, rain and wind

NASA Astrophysics Data System (ADS)

Marzen, Miriam; Iserloh, Thomas; de Lima, João L. M. P.; Ries, Johannes B.

2015-04-01

Short distance erosion of soil surface material is one of the big question marks in soil erosion studies. The exact measurement of short-distance transported soil particles, prior to the occurrence of overland flow, is a challenge to soil erosion science due to the particular requirements of the experimental setup and test procedure. To approach a quantification of amount and distance of each type of transport, we applied an especially developed multiple-gutter system installed inside the Trier Portable Wind and Rainfall Simulator (PWRS). We measured the amount and travel distance of soil particles detached and transported by raindrops (splash), wind-driven rain (splash-saltation and splash-drift) and wind (saltation). The test setup included three different erosion agents (rain/ wind-driven rain/ wind), two substrates (sandy/ loamy), three surface structures (grain roughness/ rills lengthwise/ rills transversal) and three slope angles (0°/+7°/-7°). The results present detailed transport patterns of the three erosion agents under the varying soil and surface conditions up to a distance of 1.6 m. Under the applied rain intensity and wind velocity, wind-driven rain splash generates the highest erosion. The erodibility and travel distance of the two substrates depend on the erosion agent. The total erosion is slightly higher for the slope angle -7° (downslope), but for wind-driven rain splash, the inclination is not a relevant factor. The effect of surface structures (rills) changes with traveling distance. The wind driven rain splash generates a much higher amount of erosion and a further travel distance of the particles due to the combined action of wind and rain. The wind-driven rain factor appears to be much more significant than the other factors. The study highlights the effects of different erosion agents and surface parameters on short-distance particle transport and the powerful impact of wind-driven rain on soil erosion.

Development of soft extraction method for structural characterization of boreal forest soil proteins with MALDI-TOF/MS

NASA Astrophysics Data System (ADS)

Kanerva, Sanna; Ketola, Raimo A.; Kitunen, Veikko; Smolander, Aino; Kotiaho, Tapio

2010-05-01

Nitrogen (N) is usually the nutrient restricting productivity in boreal forests. Forest soils contain a great amount of nitrogen, but only a small part of it is in mineral form. Most part of soil N is bound in the structures of different organic compounds such as proteins, peptides, amino acids and more stabilized, refractory compounds. Due to the fact that soil organic N has a very important role in soil nutrient cycling and in plant nutrition, there is a need for more detailed knowledge of its chemistry in soil. Conventional methods to extract and analyze soil organic N are usually very destructive for structures of higher molecular weight organic compounds, such as proteins. The aim of this study was to characterize proteins extracted from boreal forest soil by "soft" extraction methods in order to maintain their molecular structure. The organic layer (F) from birch forest floor containing 78% of organic matter was sieved, freeze dried, pulverized, and extracted with a citrate or phosphate buffer (pH 6 or 8). Sequential extraction with the citrate or phosphate buffer and an SDS buffer (pH 6.8), slightly modified from the method of Chen et al. (2009, Proteomics 9: 4970-4973), was also done. Proteins were purified from the soil extract by extraction with buffered phenol and precipitated with methanol + 0.1M ammonium acetate at -20°C. Characterization of proteins was performed with matrix assisted laser desorption ionization - time-of-flight mass spectrometry (MALDI-TOF/MS) and the concentration of total proteins was measured using Bradford's method. Bovine serum albumin (BSA) was used as a positive control in the extractions and as a standard protein in Bradford's method. Our results showed that sequential extraction increased the amount of extracted proteins compared to the extractions without the SDS-buffer; however, it must be noted that the use of SDS-buffer very probably increased denaturization of proteins. Purification of proteins from crude soil extracts by phenol extraction was essential prior to measurement of total proteins; there seemed to be a lot of compounds in crude soil extracts that interfere with the analysis of total proteins, causing overestimation in protein concentration. pH of the buffer solution did not seem to be very crucial for the extractability of soil natural proteins, but at the higher pH, the amount of interfering compounds increased. However, the recovery of BSA added was clearly higher at the higher pH. When the protein precipitates were analyzed with MALDI-TOF/MS, a large curve, most likely formed from wide peaks of several compounds, indicate that most of the compounds in the precipitate were <15 kDa or ~20-50 kDa in molecular weight. It seems that in order to identify individual proteins from mass spectra, a separation of compounds with varying molecular weight is needed before the MALDI-TOF/MS analysis. Due to the fact that a relatively high amount of BSA added was not recovered by the extractions and that the intensity of the signals observed in mass spectra was low, it is questionable whether it is possible to extract soil natural proteins effectively from soils containing a high amount of organic matter without destructing the structures of proteins.

Local climatic conditions constrain soil yeast diversity patterns in Mediterranean forests, woodlands and scrub biome.

PubMed

Yurkov, Andrey M; Röhl, Oliver; Pontes, Ana; Carvalho, Cláudia; Maldonado, Cristina; Sampaio, José Paulo

2016-02-01

Soil yeasts represent a poorly known fraction of the soil microbiome due to limited ecological surveys. Here, we provide the first comprehensive inventory of cultivable soil yeasts in a Mediterranean ecosystem, which is the leading biodiversity hotspot for vascular plants and vertebrates in Europe. We isolated and identified soil yeasts from forested sites of Serra da Arrábida Natural Park (Portugal), representing the Mediterranean forests, woodlands and scrub biome. Both cultivation experiments and the subsequent species richness estimations suggest the highest species richness values reported to date, resulting in a total of 57 and 80 yeast taxa, respectively. These values far exceed those reported for other forest soils in Europe. Furthermore, we assessed the response of yeast diversity to microclimatic environmental factors in biotopes composed of the same plant species but showing a gradual change from humid broadleaf forests to dry maquis. We observed that forest properties constrained by precipitation level had strong impact on yeast diversity and on community structure and lower precipitation resulted in an increased number of rare species and decreased evenness values. In conclusion, the structure of soil yeast communities mirrors the environmental factors that affect aboveground phytocenoses, aboveground biomass and plant projective cover. © FEMS 2015. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Structural equation modeling of PAHs in ambient air, dust fall, soil, and cabbage in vegetable bases of Northern China.

PubMed

Zhang, YunHui; Hou, DeYi; Xiong, GuanNan; Duan, YongHong; Cai, ChuanYang; Wang, Xin; Li, JingYa; Tao, Shu; Liu, WenXin

2018-08-01

A series of field samples including ambient air (gaseous and particulate phases), dust fall, surface soil, rhizosphere soil and cabbage tissues (leaf, root and core), were collected in vegetable bases near a large coking manufacturer in Shanxi Province, Northern China, during a harvest season. A factor analysis was employed to apportion the emission sources of polycyclic aromatic hydrocarbons (PAHs), and the statistical results indicated coal combustion was the dominant emission source that accounted for different environmental media and cabbage tissues, while road traffic, biomass burning and the coking industry contributed to a lesser extent. A structural equation model was first developed to quantitatively explore the transport pathways of PAHs from surrounding media to cabbage tissues. The modeling results showed that PAHs in ambient air were positively associated with those in dust fall, and a close relationship was also true for PAHs in dust fall and in surface soil due to air-soil exchange process. Furthermore, PAHs in surface soil were correlated with those in rhizosphere soil and in the cabbage leaf with the path coefficients of 0.83 and 0.39, respectively. PAHs in the cabbage leaf may dominantly contribute to the accumulation of PAHs in the edible part of cabbages. Copyright © 2018 Elsevier Ltd. All rights reserved.

Biosolids applied to agricultural land: Influence on structural and functional endpoints of soil fauna on a short- and long-term scale.

PubMed

Coors, Anja; Edwards, Mark; Lorenz, Pascale; Römbke, Jörg; Schmelz, Rüdiger M; Topp, Edward; Waszak, Karolina; Wilkes, Graham; Lapen, David R

2016-08-15

Biosolids have well-documented crop and soil benefits similar to other sources of organic amendment, but there is environmental concern due to biosolids-associated pollutants. The present study investigated two field sites that had received biosolids at commercial-scale rates in parallel to associated field sections which were managed similarly but without receiving biosolids (controls). The investigated endpoints were abundance and diversity of soil organisms (nematodes, enchytraeids and earthworms) and soil fauna feeding activity as measured by the bait lamina assay. Repeated sampling of one of the field sites following the only biosolids application demonstrated an enrichment effect typical for organic amendments, which was mostly exhausted after 44months. After an initial suppression, the proportion of free-living plant-parasitic nematodes tended to increase in the biosolids-amended soil over time. Yet, none of the endpoints at this site indicated significant negative effects resulting from the biosolids until 44months post application. In contrast to the repeatedly tilled first field site, the second one was left fallow after three biosolids applications, and was sampled 96months post last application. It was only at this field site that potential evidence for a long-term impact of biosolids was detected with regard to two endpoints: earthworm abundance and structure of the nematode assemblage. Agricultural management and correlation with abiotic soil parameters explained the observed difference in earthworm abundance. Yet, the development of a highly structured and mature nematode assemblage at the control but not at the biosolids-amended section of this fallow field could not be explained by such correlations nor by soil metal concentrations. Overall, the present study found only weak evidence for negative long-term impacts of biosolids applied at commercial rates on soil fauna. High-level community parameters such as the nematode structure index (SI) appeared more suitable to detect deleterious effects on soil fauna than simple abundance measurements. Copyright © 2016 Elsevier B.V. All rights reserved.

Characterization of alkyl carbon in forest soils by CPMAS 13C NMR spectroscopy and dipolar dephasing

USGS Publications Warehouse

Kogel-Knabner, I.; Hatcher, P.G.

1989-01-01

Samples obtained from forest soils at different stages of decomposition were treated sequentially with chloroform/methanol (extraction of lipids), sulfuric acid (hydrolysis), and sodium chlorite (delignification) to enrich them in refractory alkyl carbon. As revealed by NMR spectroscopy, this treatment yielded residues with high contents of alkyl carbon. In the NMR spectra of residues obtained from litter samples, resonances for carbohydrates are also present, indicating that these carbohydrates are tightly bound to the alkyl carbon structures. During decomposition in the soils this resistant carbohydrate fraction is lost almost completely. In the litter samples the alkyl carbon shows a dipolar dephasing behavior indicative of two structural components, a rigid and a more mobile component. As depth and decomposition increase, only the rigid component is observed. This fact could be due to selective degradation of the mobile component or to changes in molecular mobility during decomposition, e.g., because of an increase in cross linking or contact with the mineral matter of the soil.

Winter ecology of a subalpine grassland: Effects of snow removal on soil respiration, microbial structure and function.

PubMed

Gavazov, Konstantin; Ingrisch, Johannes; Hasibeder, Roland; Mills, Robert T E; Buttler, Alexandre; Gleixner, Gerd; Pumpanen, Jukka; Bahn, Michael

2017-07-15

Seasonal snow cover provides essential insulation for mountain ecosystems, but expected changes in precipitation patterns and snow cover duration due to global warming can influence the activity of soil microbial communities. In turn, these changes have the potential to create new dynamics of soil organic matter cycling. To assess the effects of experimental snow removal and advanced spring conditions on soil carbon (C) and nitrogen (N) dynamics, and on the biomass and structure of soil microbial communities, we performed an in situ study in a subalpine grassland in the Austrian Alps, in conjunction with soil incubations under controlled conditions. We found substantial winter C-mineralisation and high accumulation of inorganic and organic N in the topsoil, peaking at snowmelt. Soil microbial biomass doubled under the snow, paralleled by a fivefold increase in its C:N ratio, but no apparent change in its bacteria-dominated community structure. Snow removal led to a series of mild freeze-thaw cycles, which had minor effects on in situ soil CO 2 production and N mineralisation. Incubated soil under advanced spring conditions, however, revealed an impaired microbial metabolism shortly after snow removal, characterised by a limited capacity for C-mineralisation of both fresh plant-derived substrates and existing soil organic matter (SOM), leading to reduced priming effects. This effect was transient and the observed recovery in microbial respiration and SOM priming towards the end of the winter season indicated microbial resilience to short-lived freeze-thaw disturbance under field conditions. Bacteria showed a higher potential for uptake of plant-derived C substrates during this recovery phase. The observed temporary loss in microbial C-mineralisation capacity and the promotion of bacteria over fungi can likely impede winter SOM cycling in mountain grasslands under recurrent winter climate change events, with plausible implications for soil nutrient availability and plant-soil interactions. Copyright © 2017 Elsevier B.V. All rights reserved.

Stable oxygen isotope analysis reveal vegetation influence on soil water movement and ecosystem water fluxes in a semi-arid oak woodland

NASA Astrophysics Data System (ADS)

Piayda, Arndt; Dubbert, Maren; Werner, Christiane; Cuntz, Matthias

2015-04-01

Mechanistically disentangling the role and function of vegetation within the hydrological cycle is one of the key questions in the interdisciplinary field of ecohydrology. The presence of vegetation can have various impacts on soil water relations: transpiration of active vegetation causes great water losses, rainfall is intercepted, soil evaporation can be reduced and infiltration, hydraulic redistribution and translatory flow might be altered. In drylands, covering around 40% of the global land surface, the carbon cycle is closely coupled to water availability due to (seasonal) droughts. Specifically savannah type ecosystems, which cover large areas worldwide, are, due to their bi-layered structure, very suitable to study the effects of distinct vegetation types on the ecosystem water cycle. Oxygen isotope signatures (δ18O) have been used to partition ecosystem evapotranspiration (ET ) because of the distinct isotopic compositions of water transpired by leaves relative to soil evaporated vapor. Recent developments in laser spectroscopy enable measurements of δ18O in the vapor phase with high temporal resolution in the field and bear a novel opportunity to trace water movement within the ecosystem. In the present study, the effects of distinct vegetation layers (i.e. trees and herbaceous vegetation) on soil water infiltration and redistribution as well as ecosystem water fluxes in a Mediterranean cork-oak woodland are disentangled. An irrigation experiment was carried out using δ18O labeled water to quantify the distinct effects of trees and herbaceous vegetation on 1) infiltration and redistribution of water in the soil profile and 2) to disentangle the effects of tree cover on the contribution of unproductive soil evaporation and understory transpiration to total ET . First results proof that stable δ18O isotopes measured onsite with laser spectroscopy is a valuable tool to trace water movement in the soil showing a much higher sensitivity than common TDR-type probes. It was possible to track soil water redistribution even beyond zero net water flux measured with TDR probes. Under shaded conditions beneath tree crowns, infiltration of precipitation reaches much deeper depths due to the limited radiation energy input and thus, reduced evaporative losses, compared to open areas between crowns. As a consequence, the isotopic enrichment back to initial conditions (as observed before the artificial precipitation event) was strongly delayed. Despite the higher water availability beneath tree crowns, transpiration of understory plants and soil evaporation rates were reduced compared to the open area due to the lack of energy. However, transpiration could be maintained much longer and at higher rates after the precipitation event then soil evaporation. These first results support previous findings at this site where a clear difference in understory plant community structure was observed. Beneath tree crowns, favorable water conditions enables a higher occurrence of grasses and nitrogen fixing forbs, whereas in between tree crowns drought adapted native species became dominant.

Dynamics of organic matter and microbial populations in amended soil: a multidisciplinary approach

NASA Astrophysics Data System (ADS)

Gigliotti, Giovanni; Pezzolla, Daniela; Zadra, Claudia; Albertini, Emidio; Marconi, Gianpiero; Turchetti, Benedetta; Buzzini, Pietro

2013-04-01

The application of organic amendments to soils, such as pig slurry, sewage sludge and compost is considered a tool for improving soil fertility and enhancing C stock. The addition of these different organic materials allows a good supply of nutrients for plants but also contributes to C sequestration, affects the microbial activity and the transformation of soil organic matter (SOM). Moreover, the addition of organic amendment has gained importance as a source of greenhouse gas (GHG) emissions and then as a cause of the "Global Warming". Therefore, it is important to investigate the factors controlling the SOM mineralization in order to improve soil C sequestration and decreasing at the same time the GHG emissions. The quality of organic matter added to the soil will play an important role in these dynamics, affecting the microbial activity and the changes in microbial community structure. A laboratory, multidisciplinary experiment was carried out to test the effect of the amendment by anaerobic digested livestock-derived organic materials on labile organic matter evolution and on dynamics of microbial population, this latter both in terms of consistence of microbial biomass, as well as in terms of microbial biodiversity. Different approaches were used to study the microbial community structure: chemical (CO2 fluxes, WEOC, C-biomass, PLFA), microbiological (microbial enumeration) and molecular (DNA extraction and Roche 454, Next Generation Sequencing, NGS). The application of fresh digestate, derived from the anaerobic treatment of animal wastes, affected the short-term dynamics of microbial community, as reflected by the increase of CO2 emissions immediately after the amendment compared to the control soil. This is probably due to the addition of easily available C added with the digestate, demonstrating that this organic material was only partially stabilized by the anaerobic process. In fact, the digestate contained a high amounts of available C, which led to increase WEOC concentration in digestate treated soil compared to the control soil. The depletion of C, likely due to the microbial activity, was confirmed by the gradual decrease of WEOC concentration in soils amended with digestate. The SUVA254 measurement showed an influence of digestate on the quality of soil WEOM, with higher values in the control rather than in the digestate amended soil, indicating a great amount of aromatic compounds in native SOM. The results of the PLFAs showed that the addition of digestate did not lead overall changes in the microbial community structure compared to the control, except for a shallow decrease of fungi. This probably suggests that the slow rate of mineralization of the organic matter added with digestate does not induce to a rapid shift of microbial community structure. The NGS showed the most important bacterial phyla and fungi species that were involved in the SOM turnover. Furthermore, this approach might be useful to trace the residence time of microbial pathogens supplied with digestates.

Effect of Dissemination of 2,4-Dichlorophenoxyacetic Acid (2,4-D) Degradation Plasmids on 2,4-D Degradation and on Bacterial Community Structure in Two Different Soil Horizons

PubMed Central

Dejonghe, Winnie; Goris, Johan; El Fantroussi, Saïd; Höfte, Monica; De Vos, Paul; Verstraete, Willy; Top, Eva M.

2000-01-01

Transfer of the 2,4-dichlorophenoxyacetic acid (2,4-D) degradation plasmids pEMT1 and pJP4 from an introduced donor strain, Pseudomonas putida UWC3, to the indigenous bacteria of two different horizons (A horizon, depth of 0 to 30 cm; B horizon, depth of 30 to 60 cm) of a 2,4-D-contaminated soil was investigated as a means of bioaugmentation. When the soil was amended with nutrients, plasmid transfer and enhanced degradation of 2,4-D were observed. These findings were most striking in the B horizon, where the indigenous bacteria were unable to degrade any of the 2,4-D (100 mg/kg of soil) during at least 22 days but where inoculation with either of the two plasmid donors resulted in complete 2,4-D degradation within 14 days. In contrast, in soils not amended with nutrients, inoculation of donors in the A horizon and subsequent formation of transconjugants (105 CFU/g of soil) could not increase the 2,4-D degradation rate compared to that of the noninoculated soil. However, donor inoculation in the nonamended B-horizon soil resulted in complete degradation of 2,4-D within 19 days, while no degradation at all was observed in noninoculated soil during 89 days. With plasmid pEMT1, this enhanced degradation seemed to be due only to transconjugants (105 CFU/g of soil), since the donor was already undetectable when degradation started. Denaturing gradient gel electrophoresis (DGGE) of 16S rRNA genes showed that inoculation of the donors was followed by a shift in the microbial community structure of the nonamended B-horizon soils. The new 16S rRNA gene fragments in the DGGE profile corresponded with the 16S rRNA genes of 2,4-D-degrading transconjugant colonies isolated on agar plates. This result indicates that the observed change in the community was due to proliferation of transconjugants formed in soil. Overall, this work clearly demonstrates that bioaugmentation can constitute an effective strategy for cleanup of soils which are poor in nutrients and microbial activity, such as those of the B horizon. PMID:10919784

Decomposition and transformation of cutin and cutan biopolymers in soils: effect on their sorptive capabilities

NASA Astrophysics Data System (ADS)

Shechter, M.; Chefetz, B.

2009-04-01

Plant cuticle materials, especially the highly aliphatic biopolymers cutin and cutan, have been reported as highly efficient natural sorbents. The objective of this study was to examine the effects of decomposition on their sorption behavior with naphthol and phenanthrene. The level of cutin and cutan was reduced by 15 and 27% respectively during the first 3 mo of incubation. From that point, the level of the cutan did not change, while the level of the cutin continued to decrease up to 32% after 20 mo. 13C NMR analysis suggested transformation of cutan mainly within its alkyl-C structure which are assigned as crystalline moieties. Cutin, however, did not exhibit significant structure changes with time. The level of humic-like substances increased due to cutin decomposition but was not influenced in the cutan system after 20 mo of incubation. This indicates that the cutin biopolymer has been decomposed and transformed into humic-like substances, whereas the cutan was less subject to transformation. Decomposition affected sorption properties in similar trends for both cutin and cutan. The Freundlich capacity coefficients (KFOC) of naphthol were much lower than phenanthrene and were less influenced by the decomposition, whereas with phenanthrene KFOC values increased significantly with time. Naphthol exhibited non-linear isotherms; and nonlinearity was decreased with incubation time. In contrast, phenanthrene isotherms were more linear and showed only moderate change with time. The decrease in the linearity of naphthol isotherms might relate to the transformation of the sorption sites due to structural changes in the biopolymers. However, with phenanthrene, these changes did not affect sorption linearity but increased sorption affinities mainly for cutan. This is probably due to decomposition of the rigid alkyl-C moieties in the cutan biopolymer. Our data suggest that both biopolymers were relatively stable in the soil for 20 mo. Cutan is less degradable than cutin and therefore is more likely to accumulate in soils and contribute to the refractory aliphatic components of soil organic matter.

Influences of Different Halophyte Vegetation on Soil Microbial Community at Temperate Salt Marsh.

PubMed

Chaudhary, Doongar R; Kim, Jinhyun; Kang, Hojeong

2018-04-01

Salt marshes are transitional zone between terrestrial and aquatic ecosystems, occupied mainly by halophytic vegetation which provides numerous ecological services to coastal ecosystem. Halophyte-associated microbial community plays an important role in the adaptation of plants to adverse condition and also affected habitat characteristics. To explore the relationship between halophytes and soil microbial community, we studied the soil enzyme activities, soil microbial community structure, and functional gene abundance in halophytes- (Carex scabrifolia, Phragmites australis, and Suaeda japonica) covered and un-vegetated (mud flat) soils at Suncheon Bay, South Korea. Higher concentrations of total, Gram-positive, Gram-negative, total bacterial, and actinomycetes PLFAs (phospholipid fatty acids) were observed in the soil underneath the halophytes compared with mud flat soil and were highest in Carex soil. Halophyte-covered soils had different microbial community composition due to higher abundance of Gram-negative bacteria than mud flat soil. Similar to PLFA concentrations, the increased activities of β-glucosidase, cellulase, phosphatase, and sulfatase enzymes were observed under halophyte soil compared to mud flat soil and Carex exhibited highest activities. The abundance of archaeal 16S rRNA, fungal ITS, and denitrifying genes (nirK, nirS, and nosZ) were not influenced by the halophytes. Abundance bacterial 16S rRNA and dissimilatory (bi)sulfite (dsrA) genes were highest in Carex-covered soil. The abundance of functional genes involved in methane cycle (mcrA and pmoA) was not affected by the halophytes. However, the ratios of mcrA/pmoA and mcrA/dsrA increased in halophyte-covered soils which indicate higher methanogenesis activities. The finding of the study also suggests that halophytes had increased the microbial and enzyme activities, and played a pivotal role in shaping microbial community structure.

Differences in soil micro-eukaryotic communities over soil pH gradients are strongly driven by parasites and saprotrophs.

PubMed

Dupont, A Ö C; Griffiths, R I; Bell, T; Bass, D

2016-06-01

A recent large-scale assessment of bacterial communities across a range of UK soil types showed that bacterial community structure was strongly determined by soil pH. We analysed a data set of eukaryotic 454 sequencing 18S rDNA from the surveyed samples and showed significant differences in eukaryotic assemblages according to pH class, mostly between low pH and higher pH soils. Soil eukaryote communities (per sample) differed most at the taxonomic rank approximating to order level. Taxonomies assigned with the Protist Ribosomal Reference and the Silva 119 databases were taxonomically inconsistent, mostly due to differing 18S annotations, although general structure and composition according to pH were coherent. A relatively small number of lineages, mostly putative parasitic protists and fungi, drive most differences between pH classes, with weaker contributions from bacterivores and autotrophs. Overall, soil parasites included a large diversity of alveolates, in particular apicomplexans. Phylogenetic analysis of alveolate lineages demonstrates a large diversity of unknown gregarines, novel perkinsids, coccidians, colpodellids and uncharacterized alveolates. Other novel and/or divergent lineages were revealed across the eukaryote tree of life. Our study provides an in-depth taxonomic evaluation of micro-eukaryotic diversity, and reveals novel lineages and insights into their relationships with environmental variables across soil gradients. © 2016 Society for Applied Microbiology and John Wiley & Sons Ltd.

Effects of Particle Size on the Shear Behavior of Coarse Grained Soils Reinforced with Geogrid.

PubMed

Kim, Daehyeon; Ha, Sungwoo

2014-02-07

In order to design civil structures that are supported by soils, the shear strength parameters of soils are required. Due to the large particle size of coarse-grained soils, large direct shear tests should be performed. In this study, large direct shear tests on three types of coarse grained soils (4.5 mm, 7.9 mm, and 15.9 mm) were performed to evaluate the effects of particle size on the shear behavior of coarse grained soils with/without geogrid reinforcements. Based on the direct shear test results, it was found that, in the case of no-reinforcement, the larger the maximum particle size became, the larger the friction angle was. Compared with the no-reinforcement case, the cases reinforced with either soft geogrid or stiff geogrid have smaller friction angles. The cohesion of the soil reinforced with stiff geogrid was larger than that of the soil reinforced with soft geogrid. The difference in the shear strength occurs because the case with a stiff geogrid has more soil to geogrid contact area, leading to the reduction in interlocking between soil particles.

Changes in faunal and vegetation communities along a soil calcium gradient in northern hardwood forests

USGS Publications Warehouse

Beier, Colin M.; Woods, Anne M.; Hotopp, Kenneth P.; Gibbs, James P.; Mitchell, Myron J.; Dovciak, Martin; Leopold, Donald J.; Lawrence, Gregory B.; Page, Blair D.

2012-01-01

Depletion of Ca from forest soils due to acidic deposition has had potentially pervasive effects on forest communities, but these impacts remain largely unknown. Because snails, salamanders, and plants play essential roles in the Ca cycle of northern hardwood forests, we hypothesized that their community diversity, abundance, and structure would vary with differences in biotic Ca availability. To test this hypothesis, we sampled 12 upland hardwood forests representing a soil Ca gradient in the Adirondack Mountains, New York (USA), where chronic deposition has resulted in acidified soils but where areas of well-buffered soils remain Ca rich due to parent materials. Along the gradient of increasing soil [Ca2+], we observed increasing trends in snail community richness and abundance, live biomass of redback salamanders (Plethodon cinereus (Green, 1818)), and canopy tree basal area. Salamander communities were dominated by mountain dusky salamanders (Desmognathus ochrophaeus Cope, 1859) at Ca-poor sites and changed continuously along the Ca gradient to become dominated by redback salamanders at the Ca-rich sites. Several known calciphilic species of snails and plants were found only at the highest-Ca sites. Our results indicated that Ca availability, which is shaped by geology and acidic deposition inputs, influences northern hardwood forest ecosystems at multiple trophic levels, although the underlying mechanisms require further study.

Determination of consolidation properties using electrical resistivity

NASA Astrophysics Data System (ADS)

Kibria, Golam; Hossain, Sahadat; Khan, Mohammad Sadik

2018-05-01

Electrical conductivity is an indirect method used to evaluate pore-structures and their influence on macro and microscale behavior of soils. Although this method can provide useful information about the consolidation properties of soil samples, insufficient studies have been conducted to identify correlations between electrical and consolidation properties. The current study presents electrical resistivity responses of clayey samples at different consolidation stages. The consolidation properties of four soil specimens were measured in conjunction with electrical conductivity. Scanning electron microscope (SEM) analyses were performed on soil samples before and after consolidation to identify the changes in fabric morphology due to the application of loads. It was observed that the electrical conductivity of samples decreased with the increase of pressure, and the trends of variations were similar to e vs. logP curves. Although a linear correlation exists between electrical conductivity and void ratio, the relationship depends on the structural changes in clay particles. Therefore, changes in fabric structures were analyzed using SEM images, and results showed that the aspect ratio of the particles increased as much as 18.3% after consolidation. Based on the investigation, the coefficient of consolidations and one-dimensional strain were determined using electrical resistivity measurements.

Fully three-dimensional analysis of high-speed train-track-soil-structure dynamic interaction

NASA Astrophysics Data System (ADS)

Galvín, P.; Romero, A.; Domínguez, J.

2010-11-01

In this paper, a general and fully three dimensional multi-body-finite element-boundary element model, formulated in the time domain to predict vibrations due to train passage at the vehicle, the track and the free field, is presented. The vehicle is modelled as a multi-body system and, therefore, the quasi-static and the dynamic excitation mechanisms due to train passage can be considered. The track is modelled using finite elements. The soil is considered as a homogeneous half-space by the boundary element method. This methodology could be used to take into account local soil discontinuities, underground constructions such as underpasses, and coupling with nearby structures that break the uniformity of the geometry along the track line. The nonlinear behaviour of the structures could be also considered. In the present paper, in order to test the model, vibrations induced by high-speed train passage are evaluated for a ballasted track. The quasi-static and dynamic load components are studied and the influence of the suspended mass on the vertical loads is analyzed. The numerical model is validated by comparison with experimental records from two HST lines. Finally, the dynamic behaviour of a transition zone between a ballast track and a slab track is analyzed and the obtained results from the proposed model are compared with those obtained from a model with invariant geometry with respect to the track direction.

[Effect of X-ray micro-computed tomography on the metabolic activity and diversity of soil microbial communities in two Chinese soils].

PubMed

Zu, Qianhui; Fang, Huan; Zhou, Hu; Zhang, Jianwei; Peng, Xinhua; Lin, Xiangui; Feng, Youzhi

2016-01-04

X-ray micro-computed tomography (micro-CT) technology, as used in the in situ and nondestructive analysis of soil physical structure, provides the opportunity of associating soil physical and biological assays. Due to the high heterogeneity of the soil matrix, X-ray micro-CT scanning and soil microbial assays should be conducted on the same soil sample. This raises the question whether X-ray micro-CT influences microbial function and diversity of the sample soil to be analyzed. To address this question, we used plate counting, microcalorimetry and pyrosequencing approaches to evaluate the effect of X-ray--at doses typically used in micro-CT--on soil microorganisms in a typical soil of North China Plain, Fluvo-aquic soil and in a typical soil of subtropical China, Ultisol soil, respectively. In both soils radiation decreased the number of viable soil bacteria and disturbed their thermogenic profiles. At DNA level, pyrosequencing revealed that alpha diversities of two soils biota were influenced in opposite ways, while beta diversity was not affected although the relative abundances of some guilds were changed. These findings indicate that the metabolically active aspects of soil biota are not compatible with X-ray micro-CT; while the beta molecular diversity based on pyrosequencing could be compatible.

Soil and substrate morphology as witnesses of present and former agricultural landscape management

NASA Astrophysics Data System (ADS)

Chartin, C.; Salvador-Blanes, S.; Hinschberger, F.; Bourennane, H.; Macaire, J.-J.

2009-04-01

Water and tillage erosion, combined with the effect of successive regrouping of the land campaigns, have sensibly modified the morphology of cultivated hillslopes. Nowadays, we can still observe over cultivated landscapes various anthropogenic structures (e.g. lynchets) that correspond to former and/or present field limits. The aim of this work is to spatially characterise the geometry of these various structures, and to assess their relation with soil variability. The 10 ha studied site corresponds to an hillslope located in a small calcareous watershed near Tours in the Parisian Basin (France). Soils are mainly Cambisols (calcaric), Epileptic cambisols (calcaric) and Colluvic cambisols. This watershed is characterised by the presence of many soil accumulation structures and has been submitted to an important regrouping of the lands since the 1960's. The existing structures were accurately located and defined through a topographical analysis (slope, profile curvature...), and then related to past and present field limits using aerial photographies and cadastral maps. Two main morphological structures, deeply marked in the topography, are identified. The most remarkable type corresponds to well developed lynchets located at the lower part of field limits. Secondary structures, less marked than lynchets, are linked to field limits which existed at least since 1836, but that disappeared from the 1960's. These secondary structures look like longitudinal bulges placed perpendicularly to the direction of the main slope. A soil survey on these two geomorphic structure types has been performed in order to determine their specific geometry. Lynchets are characterised by a large increase in the thickness of soils: from 35 cm at 24 m upslope to more than 120 cm on its top. But, in some cases, the elevation study shows a topographical discontinuity between the top of the accumulation and the field or road below, discontinuity that is more important than the maximum soil thickness observed in the lynchet. This implies that the substrate, which is mostly homogeneous, has been largely excavated below these limits certainly due to repeated tillage operations. Concerning the secondary structures, soil thickness increases slightly from 35 cm at 16 m up- and downslope the former field limit to 70 cm at the maximum of the bulges convexity. However, the slope morphology seems to show larger soil accumulation considering a regular substrate morphology along the hillslope profile. Here too, by combining soil thickness and surface topography, we show that the substrate has certainly been strongly remodelled at these former field limits by tillage erosion. The spatial variability of the various soils types is closely linked to the sequence of structures oriented perpendicularly to the direction of the main slope. Although the current topography is clearly marked by various structures linked to former and present field limits, it appears that soil thickness is not the only factor explaining these large variations in the slope morphology: long-term agricultural practices, certainly tillage, "shape" the substrate as well. It is thus important to take into account these substrate excavations for sediment budget studies. The use of tracers such as 137Cs will allow to understand the intensity of these morphological changes at the slope scale within the last decades.

A thermodynamic approach to link self-organization, preferential flow and rainfall-runoff behaviour

NASA Astrophysics Data System (ADS)

Zehe, E.; Ehret, U.; Blume, T.; Kleidon, A.; Scherer, U.; Westhoff, M.

2013-11-01

This study investigates whether a thermodynamically optimal hillslope structure can, if existent, serve as a first guess for uncalibrated predictions of rainfall-runoff. To this end we propose a thermodynamic framework to link rainfall-runoff processes and dynamics of potential energy, kinetic energy and capillary binding energy in catchments and hillslopes. The starting point is that hydraulic equilibrium in soil corresponds to local thermodynamic equilibrium (LTE), characterized by a local maximum entropy/minimum of free energy of soil water. Deviations from LTE occur either due to evaporative losses, which increase absolute values of negative capillary binding energy of soil water and reduce its potential energy, or due to infiltration of rainfall, which increases potential energy of soil water and reduces the strength of capillary binding energy. The amplitude and relaxation time of these deviations depend on climate, vegetation, soil hydraulic functions, topography and density of macropores. Based on this framework we analysed the free energy balance of hillslopes within numerical experiments that perturbed model structures with respect to the surface density of macropores. These model structures have been previously shown to allow successful long-term simulations of the water balances of the Weiherbach and the Malalcahuello catchments, which are located in distinctly different pedological and climatic settings. Our findings offer a new perspective on different functions of preferential flow paths depending on the pedological setting. Free energy dynamics of soil water in the cohesive soils of the Weiherbach is dominated by dynamics of capillary binding energy. Macropores act as dissipative wetting structures by enlarging water flows against steep gradients in soil water potential after long dry spells. This implies accelerated depletion of these gradients and faster relaxation back towards LTE. We found two local optima in macropore density that maximize reduction rates of free energy of soil water during rainfall-driven conditions. These two optima exist because reduction rates of free energy are, in this case, a second-order polynomial of the wetting rate, which implicitly depends on macroporosity. An uncalibrated long-term simulation of the water balance of the Weiherbach catchment based on the first optimum macroporosity performed almost as well as the best fit when macroporosity was calibrated to match rainfall-runoff. In the Malalcahuello catchment we did not find an apparent optimum density of macropores, because free energy dynamics of soil water during rainfall-driven conditions is dominated by increases of potential energy. Macropores act as dissipative drainage structures by enhancing export of potential energy. No optimum macropore density exists in this case because potential energy change rates scale linearly with the wetting rate. We found, however, a distinguished macroporosity that assures steady-state conditions of the potential energy balance of the soil, in the sense that average storage of potential energy is compensated by average potential energy export. This distinguished macroporosity was close to the value that yielded the best fit of rainfall-runoff behaviour during a calibration exercise and allowed a robust estimate of the annual runoff coefficient. Our findings are promising for predictions in ungauged catchments (PUB) as the optimal/distinguished model structures can serve as a first guess for uncalibrated predictions of rainfall-runoff. They also offer an alternative for classifying catchments according to their similarity of the free energy balance components.

On the Need to Establish an International Soil Modeling Consortium

NASA Astrophysics Data System (ADS)

Vereecken, H.; Vanderborght, J.; Schnepf, A.

2014-12-01

Soil is one of the most critical life-supporting compartments of the Biosphere. Soil provides numerous ecosystem services such as a habitat for biodiversity, water and nutrients, as well as producing food, feed, fiber and energy. To feed the rapidly growing world population in 2050, agricultural food production must be doubled using the same land resources footprint. At the same time, soil resources are threatened due to improper management and climate change. Despite the many important functions of soil, many fundamental knowledge gaps remain, regarding the role of soil biota and biodiversity on ecosystem services, the structure and dynamics of soil communities, the interplay between hydrologic and biotic processes, the quantification of soil biogeochemical processes and soil structural processes, the resilience and recovery of soils from stress, as well as the prediction of soil development and the evolution of soils in the landscape, to name a few. Soil models have long played an important role in quantifying and predicting soil processes and related ecosystem services. However, a new generation of soil models based on a whole systems approach comprising all physical, mechanical, chemical and biological processes is now required to address these critical knowledge gaps and thus contribute to the preservation of ecosystem services, improve our understanding of climate-change-feedback processes, bridge basic soil science research and management, and facilitate the communication between science and society. To meet these challenges an international community effort is required, similar to initiatives in systems biology, hydrology, and climate and crop research. Our consortium will bring together modelers and experimental soil scientists at the forefront of new technologies and approaches to characterize soils. By addressing these aims, the consortium will contribute to improve the role of soil modeling as a knowledge dissemination instrument in addressing key global issues and stimulate the development of translational research activities. This presentation will provide a compelling case for this much-needed effort, with a focus on tangible benefits to the scientific and food security communities.

Agrophysical assessment of alluvial calcareous soils of the Çumra region of Central Anatolia in Turkey

NASA Astrophysics Data System (ADS)

Shein, E. V.; Erol, S. A.; Milanovskii, E. Yu.; Verkhovtseva, N. V.; Mikayilov, F. D.; Er, F.; Ersahin, S.

2014-07-01

Some physical (density, coefficient of filtration, particle-size composition, etc.) and chemical (contents of carbonates, organic carbon, nitrogen, etc.) properties of an alluvial calcareous soil were studied in Central Anatolia (Konya province, Çumra region). These heavy-textured (medium clay) soils with a low content of organic carbon (less than 1%) have favorable agrophysical properties due to the stable structure of the pore space. The studies of the water regime of soils under drop irrigation confirm the favorable hydrological properties of these soils. The use of the known agrophysical estimates (after Medvedev, the index of the optimal water regime, etc.) has revealed the high dispersal of the data related to the low humus content in these heavy-textured soils. The favorable structure of the pore space is suggested to be stipulated by the active activity of the numerous and diverse representatives of soil biota. Four phyla predominate in the microbio-logical composition of the soils studied; among them, Actinobacteria is the dominant. The composition of this phylum is dominated by the elevated number of both higher ( Streptomyces) and lower (three species of Rhodococcus) actinobacteria. The high biodiversity of bacteria against the background of their great total number and the developed trophic interactions in the microbial community promote the well-balanced production of specific metabolites, including gaseous ones (CO2, H2). This circumstance allows this clayey soil to function rather actively while protecting the pore space against compaction and maintaining the optimal density, porosity, and hydrological properties.

7 CFR 610.12 - Equations for predicting soil loss due to water erosion.

Code of Federal Regulations, 2012 CFR

2012-01-01

... 7 Agriculture 6 2012-01-01 2012-01-01 false Equations for predicting soil loss due to water... ASSISTANCE Soil Erosion Prediction Equations § 610.12 Equations for predicting soil loss due to water erosion. (a) The equation for predicting soil loss due to erosion for both the USLE and the RUSLE is A = R × K...

7 CFR 610.12 - Equations for predicting soil loss due to water erosion.

Code of Federal Regulations, 2014 CFR

2014-01-01

... 7 Agriculture 6 2014-01-01 2014-01-01 false Equations for predicting soil loss due to water... ASSISTANCE Soil Erosion Prediction Equations § 610.12 Equations for predicting soil loss due to water erosion. (a) The equation for predicting soil loss due to erosion for both the USLE and the RUSLE is A = R × K...

7 CFR 610.12 - Equations for predicting soil loss due to water erosion.

Code of Federal Regulations, 2011 CFR

2011-01-01

... 7 Agriculture 6 2011-01-01 2011-01-01 false Equations for predicting soil loss due to water... ASSISTANCE Soil Erosion Prediction Equations § 610.12 Equations for predicting soil loss due to water erosion. (a) The equation for predicting soil loss due to erosion for both the USLE and the RUSLE is A = R × K...

7 CFR 610.12 - Equations for predicting soil loss due to water erosion.

Code of Federal Regulations, 2013 CFR

2013-01-01

... 7 Agriculture 6 2013-01-01 2013-01-01 false Equations for predicting soil loss due to water... ASSISTANCE Soil Erosion Prediction Equations § 610.12 Equations for predicting soil loss due to water erosion. (a) The equation for predicting soil loss due to erosion for both the USLE and the RUSLE is A = R × K...

7 CFR 610.12 - Equations for predicting soil loss due to water erosion.

Code of Federal Regulations, 2010 CFR

2010-01-01

... 7 Agriculture 6 2010-01-01 2010-01-01 false Equations for predicting soil loss due to water... ASSISTANCE Soil Erosion Prediction Equations § 610.12 Equations for predicting soil loss due to water erosion. (a) The equation for predicting soil loss due to erosion for both the USLE and the RUSLE is A = R × K...

Soil gas (²²²Rn, CO₂, ⁴He) behaviour over a natural CO₂ accumulation, Montmiral area (Drôme, France): geographical, geological and temporal relationships.

PubMed

Gal, Frédérick; Joublin, Franck; Haas, Hubert; Jean-Prost, Véronique; Ruffier, Véronique

2011-02-01

The south east basin of France shelters deep CO₂ reservoirs often studied with the aim of better constraining geological CO₂ storage operations. Here we present new soil gas data, completing an existing dataset (CO₂, ²²²Rn, ⁴He), together with mineralogical and physical characterisations of soil columns, in an attempt to better understand the spatial distribution of gas concentrations in the soils and to rule on the sealed character of the CO₂ reservoir at present time. Anomalous gas concentrations were found but did not appear to be clearly related to geological structures that may drain deep gases up to the surface, implying a dominant influence of near surface processes as indicated by carbon isotope ratios. Coarse grained, quartz-rich soils favoured the existence of high CO₂ concentrations. Fine grained clayey soils preferentially favoured the existence of ²²²Rn but not CO₂. Soil formations did not act as barriers preventing gas migrations in soils, either due to water content or due to mineralogical composition. No abundant leakage from the Montmiral reservoir can be highlighted by the measurements, even near the exploitation well. As good correlation between CO₂ and ²²²Rn concentrations still exist, it is suggested that ²²²Rn migration is also CO₂ dependent in non-leaking areas--diffusion dominated systems. Copyright © 2010 Elsevier Ltd. All rights reserved.

Soil gas radon concentrations measurements in terms of great soil groups.

PubMed

Içhedef, Mutlu; Saç, Müslim Murat; Camgöz, Berkay; Bolca, Mustafa; Harmanşah, Çoşkun

2013-12-01

In this study, soil gas radon concentrations were investigated according to locations, horizontal soil layers and great soil groups around Tuzla Fault, Seferihisar-İzmir. Great soil groups are a category that described the horizontal soil layers under soil classification system and distributions of radon concentration in the great soil groups are firstly determined by the present study. According to the obtained results, it has been showed that the radon concentrations in the Koluvial soil group are higher than the other soil groups in the region. Also significant differences on location in same great soil group were determined. The radon concentrations in the Koluvial soil groups were measured with respect to soil layers structures (A, B, C1, and C2). It has been observed that the values increase with depth of soil (C2>C1>B>A). The main reason may be due to the meteorological factors that have limited effect on radon escape from deep layers. Although fault lines pass thought the study area radon concentrations were varied location to location, layer to layer and great group to great group. The study shows that a detailed location description should be performed before soil radon measurements for earthquake predictions. Copyright © 2013 Elsevier Ltd. All rights reserved.

Fire effects on soil organic matter content, composition, and nutrients in boreal interior Alaska

USGS Publications Warehouse

Neff, J.C.; Harden, J.W.; Gleixner, G.

2005-01-01

Boreal ecosystems contain a substantial fraction of the earth's soil carbon stores and are prone to frequent and severe wildfires. In this study, we examine changes in element and organic matter stocks due to a 1999 wildfire in Alaska. One year after the wildfire, burned soils contained between 1071 and 1420 g/m2 less carbon than unburned soils. Burned soils had lower nitrogen than unburned soils, higher calcium, and nearly unchanged potassium, magnesium, and phosphorus stocks. Burned surface soils tended to have higher concentrations of noncombustible elements such as calcium, potassium, magnesium, and phosphorus compared with unburned soils. Combustion losses of carbon were mostly limited to surface dead moss and fibric horizons, with no change in the underlying mineral horizons. Burning caused significant changes in soil organic matter structure, with a 12% higher ratio of carbon to combustible organic matter in surface burned horizons compared with unburned horizons. Pyrolysis gas chromatography - mass spectroscopy also shows preferential volatilization of polysaccharide-derived organic matter and enrichment of lignin-and lipid-derived compounds in surface soils. The chemistry of deeper soil layers in burned and unburned sites was similar, suggesting that immediate fire impacts were restricted to the surface soil horizon. ?? 2005 NRC.

Derivation of thermokarst distribution based on climate and surface characteristics

NASA Astrophysics Data System (ADS)

Schöngaßner, Thomas; Hagemann, Stefan

2013-04-01

About one quarter of the northern hemisphere is covered by permafrost. Permafrost areas inherit a high amount of deposited soil organic carbon, which represents approximately 50% of the estimated global below-ground organic carbon pool and is more than twice the size of the current atmospheric carbon pool. A destabilization due to the expected amplitude of future Arctic climate warming would lead to a global-scale feedback mechanism. This feedback comprise interactions between snow, permafrost, hydrology, and ecosystems, which include altered energy and water fluxes between atmosphere and land surface. The representation of permafrost related processes in GCMs and ESMs is still rudimentary and needs to be extended to improve the climate model performance in high latitudes. In this sense thermokarst processes should be included into JSBACH, the land-surface component of MPI-ESM. Initially, a 1-D scheme of thermal dynamics will be implemented into JSBACH, which fits into very recent developments with regards to permafrost melting and freezing (T. Blome; Ekici et al., in prep.) and a dynamical wetland scheme (Stacke and Hagemann, 2012). Structural improvements and new parametrization of the model are required with regard to heat and water flow (physical processes) and carbon and nitrogen dynamics (bio-geochemical processes). The implementation of a thermokarst module is one task within the EU project PAGE21 and is a joint activity between MPI-M Hamburg and MPI-BGC Jena. Thermokarst changes are coupled thermal-hydrological processes, which lead to an enhanced thawing of ice-rich permafrost on local-to-regional scales, where the soil structure is characterized by segregated ice and ice-wedges. They result in severe consequences for soil structure, hydrology, and depletion of soil organic carbon. Thermokarst affected areas appear as a very uneven surface of hummocks and marshy hollows. The initial heat balance of the surface is disturbed by different trigger mechanisms, which cause the ground ice to melt and the soil to subside into depressions due to developing cavities in the interior. The depressions fill up with melting and precipitating water. Since deeper water bodies do not freeze up entirely, the annual mean surface temperature increases in the soil beneath. Therefore permafrost thawing is continued and depressions grow further due to soil subsidence and slope wash at the margins until a new soil surface heat balance is reached. Here I'd like to give a short overview and an introduction into the ongoing thermokarst process in the Arctic tundra. The main focus will be on investigating the actual distribution of thermokarst lakes in the high northern latitudes. The development of thermokarst lakes depends on soil parameters like ice content, surface temperature, soil texture as well as on climate states like monthly mean temperature, precipitation, winter snow depth. They contribute to the surface heat balance and may serve as a measure for thermokarst potential. Since thermokarst mechanism is a small-scale process of 10-1000m in spatial extent, it needs to be parametrized for GCM applications on ESM grid scale. Thus, we want to derive the thermokarst distribution as a function of climate and soil parameters.

Differences in Bacterial Diversity and Communities Between Glacial Snow and Glacial Soil on the Chongce Ice Cap, West Kunlun Mountains.

PubMed

Yang, Guang Li; Hou, Shu Gui; Le Baoge, Ri; Li, Zhi Guo; Xu, Hao; Liu, Ya Ping; Du, Wen Tao; Liu, Yong Qin

2016-11-04

A detailed understanding of microbial ecology in different supraglacial habitats is important due to the unprecedented speed of glacier retreat. Differences in bacterial diversity and community structure between glacial snow and glacial soil on the Chongce Ice Cap were assessed using 454 pyrosequencing. Based on rarefaction curves, Chao1, ACE, and Shannon indices, we found that bacterial diversity in glacial snow was lower than that in glacial soil. Principal coordinate analysis (PCoA) and heatmap analysis indicated that there were major differences in bacterial communities between glacial snow and glacial soil. Most bacteria were different between the two habitats; however, there were some common bacteria shared between glacial snow and glacial soil. Some rare or functional bacterial resources were also present in the Chongce Ice Cap. These findings provide a preliminary understanding of the shifts in bacterial diversity and communities from glacial snow to glacial soil after the melting and inflow of glacial snow into glacial soil.

The two-layer geochemical structure of modern biogeochemical provinces and its significance for spatially adequate ecological evaluations and decisions

NASA Astrophysics Data System (ADS)

Korobova, Elena; Romanov, Sergey

2014-05-01

Contamination of the environment has reached such a scale that ecogeochemical situation in any area can be interpreted now as a result of the combined effect of natural and anthropogenic factors. The areas that appear uncomfortable for a long stay can have natural and anthropogenic genesis, but the spatial structure of such biogeochemical provinces is in any case formed of a combination of natural and technogenic fields of chemical elements. Features of structural organization and the difference in factors and specific time of their formation allow their separation on one hand and help in identification of areas with different ecological risks due to overlay of the two structures on the other. Geochemistry of soil cover reflects the long-term result of the naturally balanced biogeochemical cycles, therefore the soil geochemical maps of the undisturbed areas may serve the basis for evaluation of the natural geochemical background with due regard to the main factors of geochemical differentiation in biosphere. Purposeful and incidental technogenic concentrations and dispersions of chemical elements of specific (mainly mono- or polycentric) structure are also fixed in soils that serve as secondary sources of contamination of the vegetation cover and local food chains. Overlay of the two structures forms specific heterogeneity of modern biogeochemical provinces with different risk for particular groups of people, animals and plants adapted to specific natural geochemical background within particular concentration interval. The developed approach is believed to be helpful for biogeochemical regionalizing of modern biosphere (noosphere) and for spatially adequate ecogeochemical evaluation of the environment and landuse decisions. It allows production of a set of applied geochemical maps such as: 1) health risk due to chemical elements deficiency and technogenic contamination accounting of possible additive effects; 2) adequate soil fertilization and melioration with due regard to secondary redistribution of chemical elements; 3) selection of areas adequate for the short- and long-term ecogeochemical monitoring; 4) selection of areas as global and regional biogeochemical standards. The approach was used to evaluate contribution of stable iodine deficiency and radioactive iodine fallout to distribution of thyroid diseases among population of the Bryansk region [1], to evaluate natural transformation of the initially uniform spatial structure of N, P, K in agricultural fields [2] and radiocesium in forest and flood plain landscapes [3]. The work has been partly supported by the Russian Foundation for Basic Research (grants 07-05-00912; 10-05-01148; 13-05-00823). References Korobova E.M., S.L. Romanov, A.I. Kuvylin, E.I. Chesalova, V.Yu. Beriozkin, I.V. Kurnosova. Modern natural and technogenic iodine biogeochemical provinces: spatial structure and health effects. Goldschmidt 2011, Prague, August 14-19, 2011. Mineralogical Magazine, 75, 3, June 2011, Goldschmidt abstracts 2011, www.minersoc.org, 1224. Romanov S.L. Patterns of the structure of nitrogen, phosphorous and potassium fields in landscape systems of Belorussia. Thesis. Moscow, Moscow State University, 1991, 20 p. Korobova E.M., Romanov S.L., 2009. A Chernobyl 137Cs contamination study as an example for the spatial structure of geochemical fields and modeling of the geochemical field structure. Chemometrics and Intelligent Laboratory Systems 99, 1-8.

Helical Root Buckling: A Transient Mechanism for Stiff Interface Penetration

NASA Astrophysics Data System (ADS)

Silverberg, Jesse; Noar, Roslyn; Packer, Michael; Harrison, Maria; Cohen, Itai; Henley, Chris; Gerbode, Sharon

2011-03-01

Tilling in agriculture is commonly used to loosen the topmost layer of soil and promote healthy plant growth. As roots navigate this mechanically heterogeneous environment, they encounter interfaces between the compliant soil and the underlying compacted soil. Inspired by this problem, we used 3D time-lapse imaging of Medicago Truncatula plants to study root growth in two-layered transparent hydrogels. The layers are mechanically distinct; the top layer is more compliant than the bottom. We observe that the roots form a transient helical structure as they attempt to penetrate the bi-layer interface. Interpreting this phenotype as a form of buckling due to root elongation, we measured the helix size as a function of the surrounding gel modulus. Our measurements show that by twisting the root tip during growth, the helical structure recruits the surrounding medium for an enhanced penetration force allowing the plants access to the lower layer of gel.

Stress-strain state of the structure in the service area of underground railway

NASA Astrophysics Data System (ADS)

Barabash, M.; Bashinsky, Y.; Korjakins, A.

2017-10-01

The paper focuses on numerical study how vibration due to underground trains influences the load-bearing building structures. Diagrams of vibration levels for monolithic floor slab depending on frequency are obtained. Levels of vibrations on floor slabs and columns are measured. The simulation of dynamic load from underground railway onto load-bearing building structures is presented as an example with account of load transmission through the soil. Recommendations for generation of design model in dynamic analysis of structure are provided.

6th international conference on case histories in geotechnical engineering August 2008conference report.

DOT National Transportation Integrated Search

2009-01-01

Due to uncertainty in the nature of soils, a systematic study of the performance of geotechnical structures and its match with predictions is extremely important. Therefore, considerable research effort is being devoted to geotechnical engineering th...

Dynamac molecular structure of plant biomass-derived black carbon (Biochar)

EPA Science Inventory

Char black carbon (BC), the solid residue of incomplete combustion, is continuously being added to soils and sediments due to natural vegetation fires, anthropogenic pollution, and new strategies for carbon sequestration (“biochar”). Here we present a molecular-level assessment o...

Long-term behavior of integral abutment bridges : appendix D, Bowen lab soil borings.

DOT National Transportation Integrated Search

2011-01-01

Integral abutment (IA) construction has become the preferred method over conventional construction for use with typical highway bridges. However, the use of these structures is limited due to state mandated length and skew limitations. To expand thei...

Accessing Queensland's soil information - an open data revolution!

NASA Astrophysics Data System (ADS)

Bryant, Kelly; O'Brien, Lauren; Brough, Daniel

2015-07-01

The Queensland government is the custodian of soil and land resource information with an estimated value of 75 million. The Soil and Land Information (SALI) system houses this data from over 600 distinct studies with some 96,000 soil observations dating back to the 1940s. This data is now not only used by government but by universities, councils, landowners, consultants and schools. Providing this information to the public in an easy and accessible way, with a focus towards online delivery is crucial. Previous issues with distribution of online soils information in Queensland have stemmed not only from limits to technology but also, changing departmental structures and multiple websites. The department which manages soils information in Queensland has undergone nine name changes in the last 12 years due to Machinery of Government (MoG) restructures. This constantly changing web presence and branding is as confusing for people sourcing soils information as it is for those providing it. The Queensland government has now moved to a whole of government online environment. This is a single website with no reference to the convoluted structures within government or department names. The aim is to prevent impacts from future MoG changes on the provision of data and information to the public. Queensland government soils now has a single dedicated website (qld.gov.au/environment/land/soil) which has allowed us to start to build a repository for soils information and is a single portal for people to access soils data. It has been demonstrated that this consistent approach to websites improves trust and confidence of users [1] and from this, confidence in using Queensland soils information and data and ultimately better land management decisions.

Impact of monovalent cations on soil structure. Part I. Results of an Iranian soil

NASA Astrophysics Data System (ADS)

Farahani, Elham; Emami, Hojat; Keller, Thomas; Fotovat, Amir; Khorassani, Reza

2018-01-01

This study investigated the impact of monovalent cations on clay dispersion, aggregate stability, soil pore size distribution, and saturated hydraulic conductivity on agricultural soil in Iran. The soil was incubated with treatment solutions containing different concentrations (0-54.4 mmol l-1) of potassium and sodium cations. The treatment solutions included two levels of electrical conductivity (EC=3 or 6 dS m-1) and six K:Na ratios per electrical conductivity level. At both electrical conductivity levels, spontaneously dispersible clay increased with increasing K concentration, and with increasing K:Na ratio. A negative linear relationship between percentage of water-stable aggregates and spontaneously dispersible clay was observed. Clay dispersion generally reduced the mean pore size, presumably due to clogging of pores, resulting in increased water retention. At both electrical conductivity levels, hydraulic conductivity increased with increasing exchangeable potassium percentage at low exchangeable potassium percentage values, but decreased with further increases in exchangeable potassium percentage at higher exchangeable potassium percentage. This is in agreement with earlier studies, but seems in conflict with our data showing increasing spontaneously dispersible clay with increasing exchangeable potassium percentage. Our findings show that clay dispersion increased with increasing K concentration and increasing K:Na ratio, demonstrating that K can have negative impacts on soil structure.

Ferrihydrite in soils

NASA Astrophysics Data System (ADS)

Vodyanitskii, Yu. N.; Shoba, S. A.

2016-07-01

Ferrihydrite—an ephemeral mineral—is the most active Fe-hydroxide in soils. According to modern data, the ferrihydrite structure contains tetrahedral lattice in addition to the main octahedral lattice, with 10-20% of Fe being concentrated in the former. The presence of Fe tetrahedrons influences the surface properties of this mineral. The chemical composition of ferrihydrite samples depends largely on the size of lattice domains ranging from 2 to 6 nm. Chemically pure ferrihydrite rarely occurs in the soil; it usually contains oxyanion (SiO14 4-, PO4 3-) and cation (Al3+) admixtures. Aluminum replace Fe3+ in the structure with a decrease in the mineral particle size. Oxyanions slow down polymerization of Fe3+ aquahydroxomonomers due to the films at the surface of mineral nanoparticles. Si- and Al-ferrihydrites are more resistant to the reductive dissolution than the chemically pure ferrihydrite. In addition, natural ferrihydrite contains organic substance that decreases the grain size of the mineral. External organic ligands favor ferrihydrite dissolution. In the European part of Russia, ferrihydrite is more widespread in the forest soils than in the steppe soils. Poorly crystallized nanoparticles of ferrihydrite adsorb different cations (Zn, Cu) and anions (phosphate, uranyl, arsenate) to immobilize them in soils; therefore, ferrihydrite nanoparticles play a significant role in the biogeochemical cycle of iron and other elements.

Basidiomycete fungal communities in Australian sclerophyll forest soil are altered by repeated prescribed burning.

PubMed

Anderson, Ian C; Bastias, Brigitte A; Genney, David R; Parkin, Pamela I; Cairney, John W G

2007-04-01

Soil basidiomycetes play key roles in forest nutrient and carbon cycling processes, yet the diversity and structure of below ground basidiomycete communities remain poorly understood. Prescribed burning is a commonly used forest management practice and there is evidence that single fire events can have an impact on soil fungal communities but little is known about the effects of repeated prescribed burning. We have used internal transcribed spacer (ITS) terminal restriction fragment length polymorphism (T-RFLP) analysis to investigate the impacts of repeated prescribed burning every two or four years over a period of 30 years on soil basidiomycete communities in an Australian wet sclerophyll forest. Detrended correspondence analysis of ITS T-RFLP profiles separated basidiomycete communities in unburned control plots from those in burned plots, with those burned every two years being the most different from controls. Burning had no effect on basidiomycete species richness, thus these differences appear to be due to changes in community structure. Basidiomycete communities in the unburned control plots were vertically stratified in the upper 20 cm of soil, but no evidence was found for stratification in the burned plots, suggesting that repeated prescribed burning results in more uniform basidiomycete communities. Overall, the results demonstrate that repeated prescribed burning alters soil basidiomycete communities, with the effect being greater with more frequent burning.

Water stability of aggregates in subtropical and tropical soils (Georgia and China) and its relationships with the mineralogy and chemical properties

NASA Astrophysics Data System (ADS)

Alekseeva, T. V.; Sokolowska, Z.; Hajnos, M.; Alekseev, A. O.; Kalinin, P. I.

2009-04-01

Water-stable aggregates isolated from three subtropical and one tropical soil (Western Georgia and China) were studied for their organic carbon, cation exchange capacity (CEC), specific surface area, magnetic susceptibility, and total chemical elements. The soils were also studied for their particle-size distribution, mineralogy, and nonsilicate Fe and Al oxides. Describe the water stability, three indices have been used: the content of water-stable macroaggregates (>0.25 mm), the mean weighted diameter of the aggregates, and the numerical aggregation index. The yellow-cinnamonic soil (China) was neutral, and the three other soils were acid. The soils were degraded with a low content of organic matter. The yellow-cinnamonic soil was characterized by the lowest water stability due to the predominantly vermiculite composition of the clay. The high water stability of the Oxisol structure was determined by the kaolinites and high content of oxides. In three out of the four soils studied, the hierarchical levels of the soil structure organization were defined; they were identified by the content of organic matter and the Ca + Mg (in Oxisols). Iron oxides mainly participated in the formation of micro-aggregates; Al and Mn contributed to the formation of macroaggregates. The water-stable aggregates acted as sorption geochemical barriers and accumulated Pb, Zn, Cd, Cs, and other trace elements up to concentrations exceeding their levels in the soil by 5 times and more. The highest correlations were obtained with CEC, Mn, and P rather than with organic carbon and Fe.

Impact of clay mineral, wood sawdust or root organic matter on the bacterial and fungal community structures in two aged PAH-contaminated soils.

PubMed

Cébron, Aurélie; Beguiristain, Thierry; Bongoua-Devisme, Jeanne; Denonfoux, Jérémie; Faure, Pierre; Lorgeoux, Catherine; Ouvrard, Stéphanie; Parisot, Nicolas; Peyret, Pierre; Leyval, Corinne

2015-09-01

The high organic pollutant concentration of aged polycyclic aromatic hydrocarbon (PAH)-contaminated wasteland soils is highly recalcitrant to biodegradation due to its very low bioavailability. In such soils, the microbial community is well adapted to the pollution, but the microbial activity is limited by nutrient availability. Management strategies could be applied to modify the soil microbial functioning as well as the PAH contamination through various amendment types. The impact of amendment with clay minerals (montmorillonite), wood sawdust and organic matter plant roots on microbial community structure was investigated on two aged PAH-contaminated soils both in laboratory and 1-year on-site pot experiments. Total PAH content (sum of 16 PAHs of the US-EPA list) and polar polycyclic aromatic compounds (pPAC) were monitored as well as the available PAH fraction using the Tenax method. The bacterial and fungal community structures were monitored using fingerprinting thermal gradient gel electrophoresis (TTGE) method. The abundance of bacteria (16S rRNA genes), fungi (18S rRNA genes) and PAH degraders (PAH-ring hydroxylating dioxygenase and catechol dioxygenase genes) was followed through qPCR assays. Although the treatments did not modify the total and available PAH content, the microbial community density, structure and the PAH degradation potential changed when fresh organic matter was provided as sawdust and under rhizosphere influence, while the clay mineral only increased the percentage of catechol-1,2-dioxygenase genes. The abundance of bacteria and fungi and the percentage of fungi relative to bacteria were enhanced in soil samples supplemented with wood sawdust and in the plant rhizospheric soils. Two distinct fungal populations developed in the two soils supplemented with sawdust, i.e. fungi related to Chaetomium and Neurospora genera and Brachyconidiellopsis and Pseudallescheria genera, in H and NM soils respectively. Wood sawdust amendment favoured the development of PAH-degrading bacteria holding Gram-negative PAH-ring hydroxylating dioxygenase, catechol-1,2-dioxygenase and catechol-2,3-dioxygenase genes. Regarding the total community structure, bacteria closely related to Thiobacillus (β-Proteobacteria) and Steroidobacter (γ-Proteobacteria) genera were favoured by wood sawdust amendment. In both soils, plant rhizospheres induced the development of fungi belonging to Ascomycota and related to Alternaria and Fusarium genera. Bacteria closely related to Luteolibacter (Verrucomicrobia) and Microbacterium (Actinobacteria) were favoured in alfalfa and ryegrass rhizosphere.

Parameterization and Modeling of Coupled Heat and Mass Transport in the Vadose Zone

NASA Astrophysics Data System (ADS)

Mohanty, B.; Yang, Z.

2016-12-01

The coupled heat and mass transport in the vadose zone is essentially a multiphysics issue. Addressing this issue appropriately has remarkable impacts on soil physical, chemical and biological processes. To data, most coupled heat and water transport modeling has focused on the interactions between liquid water, water vapor and heat transport in homogeneous and layered soils. Comparatively little work has been done on structured soils where preferential infiltration and evaporation flow occurs. Moreover, the traditional coupled heat and water model usually neglects the nonwetting phase air flow, which was found to be significant in the state-of-the-art modeling framework for coupled heat and water transport investigation. However, the parameterizations for the nonwetting phase air permeability largely remain elusive so far. In order to address the above mentioned limitations, this study aims to develop and validate a predictive multiphysics modeling framework for coupled soil heat and water transport in the heterogeneous shallow subsurface. To this end, the following research work is specifically conducted: (a) propose an improved parameterization to better predict the nonwetting phase relative permeability; (b) determine the dynamics, characteristics and processes of simultaneous soil moisture and heat movement in homogeneous and layered soils; and (c) develop a nonisothermal dual permeability model for heterogeneous structured soils. The results of our studies showed that: (a) the proposed modified nonwetting phase relative permeability models are much more accurate, which can be adopted for better parameterization in the subsequent nonisothermal two phase flow models; (b) the isothermal liquid film flow, nonwetting phase gas flow and liquid-vapor phase change non-equilibrium effects are significant in the arid and semiarid environments (Riverside, California and Audubon, Arizona); and (c) the developed nonisothermal dual permeability model is capable of characterizing the preferential evaporation path in the heterogeneous structured soils due to the fact that the capillary forces divert the pore water from coarse-textured soils (high temperature region) toward the fine-textured soils (low temperature region).

Experimental drought induces short-term changes in soil functionality and microbial community structure after fire in a Mediterranean shrubland

NASA Astrophysics Data System (ADS)

Hinojosa, M. B.; Parra, A.; Laudicina, V. A.; Moreno, J. M.

2014-10-01

Fire is a major ecosystem driver, causing significant changes in soil nutrients and microbial community structure and functionality. Post-fire soil dynamics can vary depending on rainfall patterns, although variations in response to drought are poorly known. This is particularly important in areas with poor soils and limited rainfall, like arid and semiarid ones. Furthermore, climate change projections in many such areas anticipate reduced precipitation and longer drought, together with an increase in fire severity. The effects of experimental drought and fire were studied on soils in a Mediterranean Cistus-Erica shrubland in Central Spain. A replicated (n = 4) field experiment was carried out in which four levels of rainfall pattern were implemented by means of a rain-out shelters and irrigation system. The treatments were: environmental control (natural rainfall), historical control (long-term average rainfall, 2 months drought), moderate drought (25% reduction of historical control, 5 months drought) and severe drought (45% reduction, 7 months drought). After one growing season, the plots were burned with high fire intensity, except a set of unburned plots that served as control. Soils were collected seasonally during one year and variables related to soil nutrient availability and microbial community structure and functionality were studied. Burned soils increased nutrient availability (P, N, K) with respect to unburned ones, but drought reduced such an increase in P, while it further increased N and K. Such changes in available soil nutrients were short-lived. Drought caused a further decrease of enzyme activities, carbon mineralization rate and microbial biomass. Fire decreased the relative abundance of fungi and actinomycetes. However, fire and drought caused a further reduction in fungi, with bacteria becoming relatively more abundant. Arguably, increasing drought and fires due to climate change will likely shift soil recovery after fire.

A geological and geotechnical investigation of the settlement area of Zümrüt Building (Konya, Turkey) which caused 92 fatalities due to its collapse

NASA Astrophysics Data System (ADS)

Özdemir, Adnan

2008-02-01

This study examines the local geological conditions and soil structure as possible causes of the collapse of the Zümrüt Building 2 February 2004. This catastrophe resulted in 92 fatalities and 35 injuries. This study also examines other views which claim weak soil structure, elastic and consolidation settlement of soil and excessive groundwater extraction as well as subsidence resulting from the underground silt erosion as possible factors. Zümrüt Building was constructed on normally consolidated, low plasticity clay. The underground water table was 30 m in depth. The internal friction angle of soil was 8°-30°, its cohesion was between 34 and 127 kN/m2 and standard penetration test numbers varied between 11 and 50. The underground water level beneath Zümrüt Building had risen 4.5 m since its construction. Therefore the claim that subsidence resulting from the decrease of underground water level contributed to the collapse is incorrect. Secondly the settlement, resulting from the filling up of the pores created by the silt receding with the underground water, was 4.4 mm in total, and attributing this as the primary cause of the collapse is also incorrect. Soil properties, in situ and laboratory test results showed that the existing and/or expected settlement and the differential ground settlement in the Zümrüt building vicinity had the potential to cause structural damage. The tensile stresses caused by differential settlements recorded here are thought to be an indicator, but not the main cause contributing to the collapse of the building. The Zümrüt Building collapse was due to several compounding mistakes during the construction phase. These were geotechnical and other project faults and the use of low quality construction materials. The resulting catastrophe caused 92 fatalities, 35 injuries and a material loss of approximately US7 million.

Implementation and Validation of an Anisotropic Plasticity Model for Clay and a Two-Scale Micropolar Constitutive Model for Sand

NASA Astrophysics Data System (ADS)

Yonten, Karma

As a multi-phase material, soil exhibits highly nonlinear, anisotropic, and inelastic behavior. While it may be impractical for one constitutive model to address all features of the soil behavior, one can identify the essential aspects of the soil's stress-strainstrength response for a particular class of problems and develop a suitable constitutive model that captures those aspects. Here, attention is given to two important features of the soil stress-strain-strength behavior: anisotropy and post-failure response. An anisotropic soil plasticity model is implemented to investigate the significance of initial and induced anisotropy on the response of geo-structures founded on cohesive soils. The model is shown to produce realistic responses for a variety of over-consolidation ratios. Moreover, the performance of the model is assessed in a boundary value problem in which a cohesive soil is subjected to the weight of a newly constructed soil embankment. Significance of incorporating anisotropy is clearly demonstrated by comparing the results of the simulation using the model with those obtained by using an isotropic plasticity model. To investigate post-failure response of soils, the issue of strain localization in geostructures is considered. Post-failure analysis of geo-structures using numerical techniques such as mesh-based or mesh-free methods is often faced with convergence issues which may, at times, lead to incorrect failure mechanisms. This is due to the fact that majority of existing constitutive models are formulated within the framework of classical continuum mechanics that leads to ill-posed governing equations at the onset of localization. To overcome this challenge, a critical state two-surface plasticity model is extended to incorporate the micro-structural mechanisms that become significant within the shear band. The extended model is implemented to study the strain localization of granular soils in drained and undrained conditions. It is demonstrated that the extended model is capable of capturing salient features of soil behavior in pre- and post-failure regimes. The effects of soil particle size, initial density and confining pressure on the thickness and orientation of shear band are investigated and compared with the observed behavior of soils.

Degradation of 4-chlorophenol and microbial diversity in soil inoculated with single Pseudomonas sp. CF600 and Stenotrophomonas maltophilia KB2.

PubMed

Nowak, Agnieszka; Mrozik, Agnieszka

2018-06-01

Soil contamination with chlorophenols is a serious problem all over the world due to their common use in different branches of industry and agriculture. The objective of this study was to determine whether bioaugmenting soil with single Pseudomonas sp. CF600 and Stenotrophomonas maltophilia KB2 and additional carbon sources such as phenol (P) and sodium benzoate (SB) could enhance the degradation of 4-chlorophenol (4-CP). During the degradation experiment, the number of bacteria as well as the structural and functional diversity of the soil microbial communities were determined. It was found that the most effective degradation of 4-CP in the soil was observed after it was inoculated with CF600 and the addition of SB. The biodegradation of five doses of 4-CP in this soil proceeded within 100 days. At the same time, the rate of the disappearance of 4-CP in the soil that had been bioaugmented with CF600 and contaminated with 4-CP and P was 5-6.5 times lower compared to its rate of disappearance in the soil that had been contaminated with 4-CP. The biodegradation of 4-CP in all of the treated and untreated soils was accompanied by a systematic decrease in the number of heterotrophic bacteria (THB) ranging between 13 and 40%. It was also proven that the tested aromatic compounds affected the soil microbial community structure through an increase in the marker fatty acids for Gram-negative bacteria (BG-) and fungi (F). The essential changes in the patterns of the fatty acid methyl esters (FAMEs) for the polluted soil included an increase in the fatty acid saturation and hydroxy fatty acid abundance. The obtained results also indicated that the introduction of CF600 into the soil contaminated with 4-CP and SB or P caused an increase in the functional diversity of the soil microorganisms. In contrast, in the soil that had been inoculated with KB2 and in the non-inoculated soil, the addition of 4-CP and P decreased the microbial activity. In conclusion, the inoculation of both strains into contaminated soil with aromatic compounds caused irreversible changes in the functional and structural diversity of the soil microbial communities. Copyright © 2018 Elsevier Ltd. All rights reserved.

Effect of soil sieving on respiration induced by low-molecular-weight substrates

NASA Astrophysics Data System (ADS)

Datta, Rahul; Vranová, Valerie; Pavelka, Marian; Rejšek, Klement; Formánek, Pavel

2014-03-01

The mesh size of sieves has a significant impact upon soil disturbance, affecting pore structure, fungal hyphae, proportion of fungi to bacteria, and organic matter fractions. The effects are dependent upon soil type and plant coverage. Sieving through a 2 mm mesh increases mineralization of exogenously supplied carbohydrates and phenolics compared to a 5 mm mesh and the effect is significant (p<0.05), especially in organic horizons, due to increased microbial metabolism and alteration of other soil properties. Finer mesh size particularly increases arabinose, mannose, galactose, ferulic and pthalic acid metabolism, whereas maltose mineralization is less affected. Sieving through a 5 mm mesh size is suggested for all type of experiments where enhanced mineralization of low-molecular-weight organic compounds needs to be minimalized.

Influence of soil moisture on soil respiration

NASA Astrophysics Data System (ADS)

Fer, Miroslav; Kodesova, Radka; Nikodem, Antonin; Klement, Ales; Jelenova, Klara

2015-04-01

The aim of this work was to describe an impact of soil moisture on soil respiration. Study was performed on soil samples from morphologically diverse study site in loess region of Southern Moravia, Czech Republic. The original soil type is Haplic Chernozem, which was due to erosion changed into Regosol (steep parts) and Colluvial soil (base slope and the tributary valley). Soil samples were collected from topsoils at 5 points of the selected elevation transect and also from the parent material (loess). Grab soil samples, undisturbed soil samples (small - 100 cm3, and large - 713 cm3) and undisturbed soil blocks were taken. Basic soil properties were determined on grab soil samples. Small undisturbed soil samples were used to determine the soil water retention curves and the hydraulic conductivity functions using the multiple outflow tests in Tempe cells and a numerical inversion with HYDRUS 1-D. During experiments performed in greenhouse dry large undisturbed soil samples were wetted from below using a kaolin tank and cumulative water inflow due to capillary rise was measured. Simultaneously net CO2 exchange rate and net H2O exchange rate were measured using LCi-SD portable photosynthesis system with Soil Respiration Chamber. Numerical inversion of the measured cumulative capillary rise data using the HYDRUS-1D program was applied to modify selected soil hydraulic parameters for particular conditions and to simulate actual soil water distribution within each soil column in selected times. Undisturbed soil blocks were used to prepare thin soil sections to study soil-pore structure. Results for all soil samples showed that at the beginning of soil samples wetting the CO2 emission increased because of improving condition for microbes' activity. The maximum values were reached for soil column average soil water content between 0.10 and 0.15 cm3/cm3. Next CO2 emission decreased since the pore system starts filling by water (i.e. aggravated conditions for microbes, closing soil gas pathways etc.). In the case of H2O exchange rate, values increased with increasing soil water contents (up to 0.15-0.20 cm3/cm3) and then remained approximately constant. Acknowledgement: Authors acknowledge the financial support of the Ministry of Agriculture of the Czech Republic No. QJ1230319

Combined effects of tides, evaporation and rainfall on the soil conditions in an intertidal creek-marsh system

NASA Astrophysics Data System (ADS)

Xin, Pei; Zhou, Tingzhang; Lu, Chunhui; Shen, Chengji; Zhang, Chenming; D'Alpaos, Andrea; Li, Ling

2017-05-01

Salt marshes, distributed globally at the land-ocean interface, are a highly productive eco-system with valuable ecological functions. While salt marshes are affected by various eco-geo-hydrological processes and factors, soil moisture and salinity affect plant growth and play a key role in determining the structure and functions of the marsh ecosystem. To examine the variations of both soil parameters, we simulated pore-water flow and salt transport in a creek-marsh system subjected to spring-neap tides, evaporation and rainfall. The results demonstrated that within a sandy-loam marsh, the tide-induced pore-water circulation averted salt build-up due to evaporation in the near-creek area. In the marsh interior where the horizontal drainage was weak, density-driven flow was responsible for dissipating salt accumulation in the shallow soil layer. In the sandy-loam marsh, the combined influences of spring-neap tides, rainfall and evaporation led to the formation of three characteristic zones, c.f., a near-creek zone with low soil water saturation (i.e., well-aerated) and low pore-water salinity as affected by the semi-diurnal spring tides, a less well-aerated zone with increased salinity where drainage occurred during the neap tides, and an interior zone where evaporation and rainfall infiltration regulated the soil conditions. These characteristics, however, varied with the soil type. In low-permeability silt-loam and clay-loam marshes, the tide-induced drainage weakened and the soil conditions over a large area became dominated by evaporation and rainfall. Sea level rise was found to worsen the soil aeration condition but inhibit salt accumulation due to evaporation. These findings shed lights on the soil conditions underpinned by various hydrogeological processes, and have important implications for further investigations on marsh plant growth and ecosystem functions.

Long-term behavior of integral abutment bridges : appendix C, US231 over railroad spur soil borings.

DOT National Transportation Integrated Search

2011-01-01

Integral abutment (IA) construction has become the preferred method over conventional construction for use with typical highway bridges. However, the use of these structures is limited due to state mandated length and skew limitations. To expand thei...

Microbial Composition in Decomposing Pine Litter Shifts in Response to Common Soil Secondary Minerals

NASA Astrophysics Data System (ADS)

Welty-Bernard, A. T.; Heckman, K.; Vazquez, A.; Rasmussen, C.; Chorover, J.; Schwartz, E.

2011-12-01

A range of environmental and biotic factors have been identified that drive microbial community structure in soils - carbon substrates, redox conditions, mineral nutrients, salinity, pH, and species interactions. However, soil mineralogy has been largely ignored as a candidate in spite of recent studies that indicate that minerals have a substantial impact on soil organic matter stores and subsequent fluxes from soils. Given that secondary minerals and organic colloids govern a soil's biogeochemical activity due to surface area and electromagnetic charge, we propose that secondary minerals are a strong determinant of the communities that are responsible for process rates. To test this, we created three microcosms to study communities during decomposition using pine forest litter mixed with two common secondary minerals in soils (goethite and gibbsite) and with quartz as a control. Changes in bacterial and fungal communities were tracked over the 154-day incubation by pyrosequencing fragments of the bacterial 16S and fungal 18S rRNA genes. Ordination using nonmetric multidimensional scaling showed that bacterial communities separated on the basis of minerals. Overall, a single generalist - identified as an Acidobacteriaceae isolate - dominated all treatments over the course of the experiment, representing roughly 25% of all communities. Fungal communities discriminated between the quartz control alone and mineral treatments as a whole. Again, several generalists dominated the community. Coniochaeta ligniaria dominated communities with abundances ranging from 29 to 40%. The general stability of generalist populations may explain the similarities between treatment respiration rates. Variation between molecular fingerprints, then, were largely a function of unique minor members with abundances ranging from 0.01 to 8%. Carbon availability did not surface as a possible mechanism responsible for shifts in fingerprints due to the relatively large mass of needles in the incubation. Other possible mechanisms include the presence of soluble Fe as an alternative energy source in the goethite treatment, the presence of toxic soluble Al in the gibbsite treatment, the loss of available phosphorus in the secondary mineral treatments due to sorption by secondary mineral surfaces, and variations in mineral surfaces as microhabitats. These findings suggest that Al and Fe oxides, such as goethite or gibbsite, are a factor in determining microbial community structure.

Measurement of the open porosity of agricultural soils with acoustic waves

NASA Astrophysics Data System (ADS)

Luong, Jeanne; Mercatoris, Benoit; Destain, Marie-France

2015-04-01

The space between agricultural soil aggregates is defined as structural porosity. It plays important roles in soil key functions that an agricultural soil performs in the global ecosystem. Porosity is one of the soil properties that affect plant growth along with soil texture, aggregate size, aeration and water holding capacity (Alaoui et al. 2011). Water supplies regulation of agricultural soil is related to the number of very small pores present in a soil due to the effect of capillarity. Change of porosity also affect the evaporation of the water on the surface (Le Maitre et al. 2014). Furthermore, soil is a habitat for soils organisms, and most living organisms, including plant roots and microorganisms require oxygen. These organisms breathe easier in a less compacted soil with a wide range of pores sizes. Soil compaction by agricultural engine degrades soil porosity. At the same time, fragmentation with tillage tools, creation of cracks due to wetting/drying and freezing/thawing cycles and effects of soil fauna can regenerate soil porosity. Soil compaction increases bulk density since soil grains are rearranged decreasing void space and bringing them into closer contact (Hamza & Anderson 2005). Drainage is reduced, erosion is facilitated and crop production decreases in a compacted soil. Determining soil porosity, giving insight on the soil compaction, with the aim to provide advices to farmers in their soil optimization towards crop production, is thus an important challenge. Acoustic wave velocity has been correlated to the porosity and the acoustic attenuation to the water content (Oelze et al. 2002). Recent studies have shown some correlations between the velocity of acoustic waves, the porosity and the stress state of soil samples (Lu et al. 2004; Lu 2005; Lu & Sabatier 2009), concluding that the ultrasonic waves are a promising tool for the rapid characterisation of unsaturated porous soils. Propagation wave velocity tends to decrease in a high porous soil, since there are more voids filled with air and water, increasing the viscous losses. Fellah et al. (2003) showed that porosity can be determined from phase speed and reflection coefficient. The propagation of acoustic waves in soil is investigated to develop a rapid method for the quantification of the porosity level of agricultural soils. In the present contribution, correlations are determined between the acoustic signatures of agricultural soil in function of its structural properties. In laboratory, compression tests are performed on unsaturated soil samples to reproduce different porosity levels. Ultrasonic pulses are sent through the considered samples. The propagated signals are treated in both time and frequency domains in order to determine the speed of the phase velocity and the reflection. Porosity is then determined and compared with water content measured by gravimetric method. Alaoui, A., Lipiec, J. & Gerke, H.H., 2011. A review of the changes in the soil pore system due to soil deformation: A hydrodynamic perspective. Soil and Tillage Research, 115-116, pp.1-15. Fellah Z.E.A., Berger S., Lauriks W., Depollier C., Aristegui C., Chapelon J.Y., 2003. Measuring the porosity and the tortuosity of porous materials via reflected waves at oblique incidence. The Journal of the Acoustical Society of America 113 (5), pp 2424-2433 Hamza, M.A. & Anderson, W.K., 2005. Soil compaction in cropping systems. Soil and Tillage Research, 82(2), pp.121-145. Lu, Z., 2005. Role of hysteresis in propagating acousitcs waves in soils. Geophysical Research Letter, pp.32:1-4. Lu, Z., Hickey, C.J. & Sabatier, J.M., 2004. Effects of compaction on the acoustic velocity in soils. Soil Science Society of America Journal, 68(1), pp.7-16. Lu, Z. & Sabatier, J.M., 2009. Effects of soil water potential and moisture content on sound speed. Soil Science Society of America Journal, 73(5), pp.1614-1625. Le Maitre, D.C., Kotzee, I.M. & O'Farrell, P.J., 2014. Impacts of land-cover change on the water flow regulation ecosystem service: Invasive alien plants, fire and their policy implications. Land Use Policy, 36, pp.171-181. Oelze, M.L., O'Briena, W.D. & Darmody, R.G., 2002. Measurement of attenuation and speed of sound in soils. Soil. Sci. Soc. Am. J.

Biochar affects soil organic matter cycling and microbial functions but does not alter microbial community structure in a paddy soil.

PubMed

Tian, Jing; Wang, Jingyuan; Dippold, Michaela; Gao, Yang; Blagodatskaya, Evgenia; Kuzyakov, Yakov

2016-06-15

The application of biochar (BC) in conjunction with mineral fertilizers is one of the most promising management practices recommended to improve soil quality. However, the interactive mechanisms of BC and mineral fertilizer addition affecting microbial communities and functions associated with soil organic matter (SOM) cycling are poorly understood. We investigated the SOM in physical and chemical fractions, microbial community structure (using phospholipid fatty acid analysis, PLFA) and functions (by analyzing enzymes involved in C and N cycling and Biolog) in a 6-year field experiment with BC and NPK amendment. BC application increased total soil C and particulate organic C for 47.4-50.4% and 63.7-74.6%, respectively. The effects of BC on the microbial community and C-cycling enzymes were dependent on fertilization. Addition of BC alone did not change the microbial community compared with the control, but altered the microbial community structure in conjunction with NPK fertilization. SOM fractions accounted for 55% of the variance in the PLFA-related microbial community structure. The particulate organic N explained the largest variation in the microbial community structure. Microbial metabolic activity strongly increased after BC addition, particularly the utilization of amino acids and amines due to an increase in the activity of proteolytic (l-leucine aminopeptidase) enzymes. These results indicate that microorganisms start to mine N from the SOM to compensate for high C:N ratios after BC application, which consequently accelerate cycling of stable N. Concluding, BC in combination with NPK fertilizer application strongly affected microbial community composition and functions, which consequently influenced SOM cycling. Copyright © 2016 Elsevier B.V. All rights reserved.

Study on the change law of soil in subsidence area of horizontal coal seam

NASA Astrophysics Data System (ADS)

Li, Pengfeng; Wang, Shugang; Liu, Wei

2017-11-01

In order to provide theoretical basis for land reclamation in subsidence area, the mining subsidence area is divided into three areas: zone I (stretching zone), zone II (compression zone) and zone III (neutral zone). On this basis, the change characteristics of the soil in the three areas of the horizontal coal seam mining subsidence area are studied. The results show that: due to stretching, soil of zone I cracks was developed, the soil continuity damage, poor integrity, serious leakage of soil Water Leakage fertilizer, the area shows the soil water holding capacity decreased, the decline of soil fertility, soil coarsening and barren trend. The soil mass in zone II is compressed and the soil structure is relatively complete, but the soil bulk density increases correspondingly, while the soil porosity decreases gradually and the permeability decreases. The main soil layer in the zone III is vertical deformation, and the soil integrity is better. But the influence of mined out area leads to the movement of water and nutrients to the lower part of the soil. This paper suggests that in the land reclamation process should adopt corresponding reclamation method based on the variation law of the three soil area of reclamation area of mining subsidence, for improving soil physicochemical properties, so as to achieve the purpose of effective reclamation.

Tree diversity and species identity effects on soil fungi, protists and animals are context dependent

PubMed Central

Tedersoo, Leho; Bahram, Mohammad; Cajthaml, Tomáš; Põlme, Sergei; Hiiesalu, Indrek; Anslan, Sten; Harend, Helery; Buegger, Franz; Pritsch, Karin; Koricheva, Julia; Abarenkov, Kessy

2016-01-01

Plant species richness and the presence of certain influential species (sampling effect) drive the stability and functionality of ecosystems as well as primary production and biomass of consumers. However, little is known about these floristic effects on richness and community composition of soil biota in forest habitats owing to methodological constraints. We developed a DNA metabarcoding approach to identify the major eukaryote groups directly from soil with roughly species-level resolution. Using this method, we examined the effects of tree diversity and individual tree species on soil microbial biomass and taxonomic richness of soil biota in two experimental study systems in Finland and Estonia and accounted for edaphic variables and spatial autocorrelation. Our analyses revealed that the effects of tree diversity and individual species on soil biota are largely context dependent. Multiple regression and structural equation modelling suggested that biomass, soil pH, nutrients and tree species directly affect richness of different taxonomic groups. The community composition of most soil organisms was strongly correlated due to similar response to environmental predictors rather than causal relationships. On a local scale, soil resources and tree species have stronger effect on diversity of soil biota than tree species richness per se. PMID:26172210

Tree diversity and species identity effects on soil fungi, protists and animals are context dependent.

PubMed

Tedersoo, Leho; Bahram, Mohammad; Cajthaml, Tomáš; Põlme, Sergei; Hiiesalu, Indrek; Anslan, Sten; Harend, Helery; Buegger, Franz; Pritsch, Karin; Koricheva, Julia; Abarenkov, Kessy

2016-02-01

Plant species richness and the presence of certain influential species (sampling effect) drive the stability and functionality of ecosystems as well as primary production and biomass of consumers. However, little is known about these floristic effects on richness and community composition of soil biota in forest habitats owing to methodological constraints. We developed a DNA metabarcoding approach to identify the major eukaryote groups directly from soil with roughly species-level resolution. Using this method, we examined the effects of tree diversity and individual tree species on soil microbial biomass and taxonomic richness of soil biota in two experimental study systems in Finland and Estonia and accounted for edaphic variables and spatial autocorrelation. Our analyses revealed that the effects of tree diversity and individual species on soil biota are largely context dependent. Multiple regression and structural equation modelling suggested that biomass, soil pH, nutrients and tree species directly affect richness of different taxonomic groups. The community composition of most soil organisms was strongly correlated due to similar response to environmental predictors rather than causal relationships. On a local scale, soil resources and tree species have stronger effect on diversity of soil biota than tree species richness per se.

Ekspansif soil solution in the villages at Trenggalek

NASA Astrophysics Data System (ADS)

Triastuti, Nusa Setiani

2017-11-01

District 2/3 hills with easy sliding and land survey results showed the soil because it consists of expansive soil Survey some villages who experience insatiability or failure, a secondary analysis of the data gathered from the expert on geology, Trenggalek geological map, Trenggalek geography. Ground location researched several villages, the Terbis village of focus discussion of the landslides and plan of relocation. In the watching a black. Colored soil and easily slide, showed very expansive soil due to montmorrelite. While soil relocation contour relative is more stable because the land of kaolin and invisible water sources that could push the land. Expansive soil in the village of solution should be cheap, easily obtainable, not damaging the fertility of the soil, groundwater should be awake to the source of life, ease of implementation, utilizing local materials and use modest tools and equipment. Under the soil surface do not get there water stored in the soil until deep the water because it will slide the ground. The analysis must meet the 7 items above and steady the contour. Design of building installed sub drain, the shallow bore foundations tied tie beam, floor plate into the unity of the structure.

Probabilistic analysis of the torsional effects on the tall building resistance due to earthquake even

NASA Astrophysics Data System (ADS)

Králik, Juraj; Králik, Juraj

2017-07-01

The paper presents the results from the deterministic and probabilistic analysis of the accidental torsional effect of reinforced concrete tall buildings due to earthquake even. The core-column structural system was considered with various configurations in plane. The methodology of the seismic analysis of the building structures in Eurocode 8 and JCSS 2000 is discussed. The possibilities of the utilization the LHS method to analyze the extensive and robust tasks in FEM is presented. The influence of the various input parameters (material, geometry, soil, masses and others) is considered. The deterministic and probability analysis of the seismic resistance of the structure was calculated in the ANSYS program.

Using semi-variogram analysis for providing spatially distributed information on soil surface condition for land surface modeling

NASA Astrophysics Data System (ADS)

Croft, Holly; Anderson, Karen; Kuhn, Nikolaus J.

2010-05-01

The ability to quantitatively and spatially assess soil surface roughness is important in geomorphology and land degradation studies. Soils can experience rapid structural degradation in response to land cover changes, resulting in increased susceptibility to erosion and a loss of Soil Organic Matter (SOM). Changes in soil surface condition can also alter sediment detachment, transport and deposition processes, infiltration rates and surface runoff characteristics. Deriving spatially distributed quantitative information on soil surface condition for inclusion in hydrological and soil erosion models is therefore paramount. However, due to the time and resources involved in using traditional field sampling techniques, there is a lack of spatially distributed information on soil surface condition. Laser techniques can provide data for a rapid three dimensional representation of the soil surface at a fine spatial resolution. This provides the ability to capture changes at the soil surface associated with aggregate breakdown, flow routing, erosion and sediment re-distribution. Semi-variogram analysis of the laser data can be used to represent spatial dependence within the dataset; providing information about the spatial character of soil surface structure. This experiment details the ability of semi-variogram analysis to spatially describe changes in soil surface condition. Soil for three soil types (silt, silt loam and silty clay) was sieved to produce aggregates between 1 mm and 16 mm in size and placed evenly in sample trays (25 x 20 x 2 cm). Soil samples for each soil type were exposed to five different durations of artificial rainfall, to produce progressively structurally degraded soil states. A calibrated laser profiling instrument was used to measure surface roughness over a central 10 x 10 cm plot of each soil state, at 2 mm sample spacing. The laser data were analysed within a geostatistical framework, where semi-variogram analysis quantitatively represented the change in soil surface structure during crusting. The laser data were also used to create digital surface models (DSM) of the soil states for visual comparison. This research has shown that aggregate breakdown and soil crusting can be shown quantitatively by a decrease in sill variance (silt soil: 11.67 (control) to 1.08 (after 90 mins rainfall)). Features present within semi-variograms were spatially linked to features at the soil surface, such as soil cracks, tillage lines and areas of deposition. Directional semi-variograms were used to provide a spatially orientated component, where the directional sill variance associated with a soil crack was shown to increase from 7.95 to 19.33. Periodicity within semi-variogram was also shown to quantify the spatial scale of soil cracking networks and potentially surface flowpaths; an average distance between soil cracks of 37 mm closely corresponded to the distance of 38 mm shown in the semi-variogram. The results provide a strong basis for the future retrieval of spatio-temporal variations in soil surface condition. Furthermore, the presence of process-based information on hydrological pathways within semi-variograms may work towards an inclusion of geostatisically-derived information in land surface models and the understanding of complex surface processes at different spatial scales.

Endophytic fungal communities of Polygonum acuminatum and Aeschynomene fluminensis are influenced by soil mercury contamination

PubMed Central

Mello, Ivani Souza; Vendruscullo, Suzana Junges; da Silva, Gilvan Ferreira; da Cunha, Cátia Nunes; White, James Francis

2017-01-01

The endophytic fungal communities of Polygonum acuminatum and Aeschynomene fluminensis were examined with respect to soil mercury (Hg) contamination. Plants were collected in places with and without Hg+2 for isolation and identification of their endophytic root fungi. We evaluated frequency of colonization, number of isolates and richness, indices of diversity and similarity, functional traits (hydrolytic enzymes, siderophores, indoleacetic acid, antibiosis and metal tolerance) and growth promotion of Aeschynomene fluminensis inoculated with endophytic fungi on soil with mercury. The frequency of colonization, structure and community function, as well as the abundant distribution of taxa of endophytic fungi were influenced by mercury contamination, with higher endophytic fungi in hosts in soil with mercury. The presence or absence of mercury in the soil changes the profile of the functional characteristics of the endophytic fungal community. On the other hand, tolerance of lineages to multiple metals is not associated with contamination. A. fluminensis depends on its endophytic fungi, since plants free of endophytic fungi grew less than expected due to mercury toxicity. In contrast plants containing certain endophytic fungi showed good growth in soil containing mercury, even exceeding growth of plants cultivated in soil without mercury. The data obtained confirm the hypothesis that soil contamination by mercury alters community structure of root endophytic fungi in terms of composition, abundance and species richness. The inoculation of A. fluminensis with certain strains of stress tolerant endophytic fungi contribute to colonization and establishment of the host and may be used in processes that aim to improve phytoremediation of soils with toxic concentrations of mercury. PMID:28742846

Endophytic fungal communities of Polygonum acuminatum and Aeschynomene fluminensis are influenced by soil mercury contamination.

PubMed

Pietro-Souza, William; Mello, Ivani Souza; Vendruscullo, Suzana Junges; Silva, Gilvan Ferreira da; Cunha, Cátia Nunes da; White, James Francis; Soares, Marcos Antônio

2017-01-01

The endophytic fungal communities of Polygonum acuminatum and Aeschynomene fluminensis were examined with respect to soil mercury (Hg) contamination. Plants were collected in places with and without Hg+2 for isolation and identification of their endophytic root fungi. We evaluated frequency of colonization, number of isolates and richness, indices of diversity and similarity, functional traits (hydrolytic enzymes, siderophores, indoleacetic acid, antibiosis and metal tolerance) and growth promotion of Aeschynomene fluminensis inoculated with endophytic fungi on soil with mercury. The frequency of colonization, structure and community function, as well as the abundant distribution of taxa of endophytic fungi were influenced by mercury contamination, with higher endophytic fungi in hosts in soil with mercury. The presence or absence of mercury in the soil changes the profile of the functional characteristics of the endophytic fungal community. On the other hand, tolerance of lineages to multiple metals is not associated with contamination. A. fluminensis depends on its endophytic fungi, since plants free of endophytic fungi grew less than expected due to mercury toxicity. In contrast plants containing certain endophytic fungi showed good growth in soil containing mercury, even exceeding growth of plants cultivated in soil without mercury. The data obtained confirm the hypothesis that soil contamination by mercury alters community structure of root endophytic fungi in terms of composition, abundance and species richness. The inoculation of A. fluminensis with certain strains of stress tolerant endophytic fungi contribute to colonization and establishment of the host and may be used in processes that aim to improve phytoremediation of soils with toxic concentrations of mercury.

Aggregate stability as an indicator of soil erodibility and soil physical quality: review and perspectives

NASA Astrophysics Data System (ADS)

Le Bissonnais, Yves; Chenu, Claire; Darboux, Frédéric; Duval, Odile; Legout, Cédric; Leguédois, Sophie; Gumiere, Silvio

2010-05-01

Aggregate breakdown due to water and rain action may cause surface crusting, slumping, a reduction of infiltration and interrill erosion. Aggregate stability determines the capacity of aggregates to resist the effects of water and rainfall. In this paper, we evaluated and reviewed the relevance of an aggregate stability measurement to characterize soil physical properties as well as to analyse the processes involved in these properties. Stability measurement assesses the sensitivity of soil aggregates to various basic disaggregation mechanisms such as slaking, differential swelling, dispersion and mechanical breakdown. It has been showed that aggregate size distributions of structural stability tests matched the size distributions of eroded aggregates under rainfall simulations and that erosion amount was well predicted using aggregate stability indexes. It means stability tests could be used to estimate both the erodibility and the size fractions that are available for crust formation and erosion processes. Several studies showed that organic matter was one of the main soil properties affecting soil stability. However, it has also been showed that aggregate stability of a given soil could vary within a year or between years. The factors controlling such changes have still to be specified. Aggregate stability appears therefore as a complex property, depending both on permanent soil characteristics and on dynamic factors such as the crusting stage, the climate and the biological activity. Despite, and may be, because of this complexity, aggregate stability seems an integrative and powerful indicator of soil physical quality. Future research efforts should look at the causes of short-term changes of structural stability, in order to fully understand all its aspects.

Micro-structure and Swelling Behaviour of Compacted Clayey Soils: A Quantitative Approach

NASA Astrophysics Data System (ADS)

Ferber, Valéry; Auriol, Jean-Claude; David, Jean-Pierre

In this paper, the clay aggregate volume and inter-aggregate volume in compacted clayey soils are quantified, on the basis of simple hypothesis, using only their water content and dry density. Swelling tests on a highly plastic clay are then interpreted by describing the influence of the inter-aggregate volume before swelling on the total volume of samples after swelling. This approach leads to a linear relation between these latter parameters. Based on these results, a description of the evolution of the microstructure due to imbibition can be proposed. Moreover, this approach enables a general quantification of the influence of initial water content and dry density on the swelling behaviour of compacted clayey soils.

Relating belowground microbial composition to the taxonomic, phylogenetic, and functional trait distributions of trees in a tropical forest.

PubMed

Barberán, Albert; McGuire, Krista L; Wolf, Jeffrey A; Jones, F Andrew; Wright, Stuart Joseph; Turner, Benjamin L; Essene, Adam; Hubbell, Stephen P; Faircloth, Brant C; Fierer, Noah

2015-12-01

The complexities of the relationships between plant and soil microbial communities remain unresolved. We determined the associations between plant aboveground and belowground (root) distributions and the communities of soil fungi and bacteria found across a diverse tropical forest plot. Soil microbial community composition was correlated with the taxonomic and phylogenetic structure of the aboveground plant assemblages even after controlling for differences in soil characteristics, but these relationships were stronger for fungi than for bacteria. In contrast to expectations, the species composition of roots in our soil core samples was a poor predictor of microbial community composition perhaps due to the patchy, ephemeral, and highly overlapping nature of fine root distributions. Our ability to predict soil microbial composition was not improved by incorporating information on plant functional traits suggesting that the most commonly measured plant traits are not particularly useful for predicting the plot-level variability in belowground microbial communities. © 2015 John Wiley & Sons Ltd/CNRS.

Directional reflectance factors for monitoring spatial changes in soil surface structure and soil organic matter erosion in agricultural systems

NASA Astrophysics Data System (ADS)

Croft, H.; Anderson, K.

2012-04-01

Soils can experience rapid structural degradation in response to land cover changes, resulting in reduced soil productivity, increased erodibility and a loss of soil organic matter (SOM). The breakdown of soil aggregates through slaking and raindrop impact is linked to organic matter turnover, with subsequently eroded material often displaying proportionally more SOM. A reduction in aggregate stability is reflected in a decline in soil surface roughness (SSR), indicating that a soil structural change can be used to highlight soil vulnerability to SOM loss through mineralisation or erosion. Accurate, spatially-continuous measurements of SSR are therefore needed at a variety of spatial and temporal scales to understand the spatial nature of SOM erosion and deposition. Remotely-sensed data can provide a cost-effective means of monitoring changes in soil surface condition over broad spatial extents. Previous work has demonstrated the ability of directional reflectance factors to monitor soil crusting within a controlled laboratory experiment, due to changes in the levels of self-shadowing effects by soil aggregates. However, further research is needed to test this approach in situ, where other soil variables may affect measured reflectance factors and to investigate the use of directional reflectance factors for monitoring soil erosion processes. This experiment assesses the potential of using directional reflectance factors to monitor changes in SSR, aggregate stability and soil organic carbon (SOC) content for two agricultural conditions. Five soil plots representing tilled and seedbed soils were subjected to different durations of natural rainfall, producing a range of different levels of SSR. Directional reflectance factors were measured concomitantly with sampling for soil structural and biochemical tests at each soil plot. Soil samples were taken to measure aggregate stability (wet sieving), SOC (loss on ignition) and soil moisture (gravimetric method). SSM values varied from 8.70 to 20.05% and SOC from 1.33 to 1.05%, across all soil plots. Each plot was characterised using a close-range laser scanning device with a 2 mm sampling interval. The point laser data were geostatistically analysed to provide a spatially-distributed measure of SSR, giving sill variance values from 3.15 to 22.99. Reflectance factors from the soil states were measured using a ground-based hyperspectral spectroradiometer (400-2500 nm) attached to an A-frame device. This method allowed measurement at a range of viewing zenith angles from extreme forwardscatter (-60°) to extreme backscatter (+60°) at a 10° sampling resolution in the solar principal plane. Reflectance measurements were compared to geostatistically-derived indicators of SSR from the laser profile data. Forward-scattered reflectance factors exhibited a very strong relationship to SSR (R2 = 0.84 at -60°; p< 0.05), demonstrating the operational potential of directional reflectance for providing SSR measurements, despite conflicting variation in SSM. SSM also presented an interesting directional signal (R2 = 0.99 at +20°; p< 0.01). Furthermore, the results showed an important link between SRR decline as measured using directional reflectance, with a decline in aggregate stability and SOC content. These findings provide an empirical and theoretical basis for the future retrieval of spatially-continuous assessments of soil surface structure and carbon turnover within a landscape context.

Site condition, structure, and growth of baldcypress along tidal/non-tidal salinity gradients

USGS Publications Warehouse

Krauss, K.W.; Duberstein, J.A.; Doyle, T.W.; Conner, W.H.; Day, Richard H.; Inabinette, L.W.; Whitbeck, J.L.

2009-01-01

This report documents changes in forest structure and growth potential of dominant trees in salt-impacted tidal and non-tidal baldcypress wetlands of the southeastern United States. We inventoried basal area and tree height, and monitored incremental growth (in basal area) of codominant baldcypress (Taxodium distichum) trees monthly, for over four years, to examine the inter-relationships among growth, site fertility, and soil physico-chemical characteristics. We found that salinity, soil total nitrogen (TN), flood duration, and flood frequency affected forest structure and growth the greatest. While mean annual site salinity ranged from 0.1 to 3.4 ppt, sites with salinity concentrations of 1.3 ppt or greater supported a basal area of less than 40 m2/ha. Where salinity was < 0.7 ppt, basal area was as high as 87 m2/ha. Stand height was also negatively affected by higher salinity. However, salinity related only to soil TN concentrations or to the relative balance between soil TN and total phosphorus (TP), which reached a maximum concentration between 1.2 and 2.0 ppt salinity. As estuarine influence shifts inland with sea-level rise, forest growth may become more strongly linked to salinity, not only due to salt effects but also as a consequence of site nitrogen imbalance.

Multiscale analysis of surface soil moisture dynamics in a mesoscale catchment utilizing an integrated ecohydrological model

NASA Astrophysics Data System (ADS)

Korres, W.; Reichenau, T. G.; Schneider, K.

2012-12-01

Soil moisture is one of the fundamental variables in hydrology, meteorology and agriculture, influencing the partitioning of solar energy into latent and sensible heat flux as well as the partitioning of precipitation into runoff and percolation. Numerous studies have shown that in addition to natural factors (rainfall, soil, topography etc.) agricultural management is one of the key drivers for spatio-temporal patterns of soil moisture in agricultural landscapes. Interactions between plant growth, soil hydrology and soil nitrogen transformation processes are modeled by using a dynamically coupled modeling approach. The process-based ecohydrological model components of the integrated decision support system DANUBIA are used to identify the important processes and feedbacks determining soil moisture patterns in agroecosystems. Integrative validation of plant growth and surface soil moisture dynamics serves as a basis for a spatially distributed modeling analysis of surface soil moisture patterns in the northern part of the Rur catchment (1100 sq km), Western Germany. An extensive three year dataset (2007-2009) of surface soil moisture-, plant- (LAI, organ specific biomass and N) and soil- (texture, N, C) measurements was collected. Plant measurements were carried out biweekly for winter wheat, maize, and sugar beet during the growing season. Soil moisture was measured with three FDR soil moisture stations. Meteorological data was measured with an eddy flux station. The results of the model validation showed a very good agreement between the modeled plant parameters (biomass, green LAI) and the measured parameters with values between 0.84 and 0.98 (Willmotts index of agreement). The modeled surface soil moisture (0 - 20 cm) showed also a very favorable agreement with the measurements for winter wheat and sugar beet with an RMSE between 1.68 and 3.45 Vol.-%. For maize, the RMSE was less favorable particularly in the 1.5 months prior to harvest. The modeled soil moisture remained in contrast to the measurements very responsive to precipitation with high soil moisture after precipitation events. This behavior indicates that the soil properties might have changed due to the formation of a surface crust or seal towards the end of the growing season. Spatial soil moisture patterns were investigated using a grid resolution of 150 meter. Spatial autocorrelation was computed on a daily basis using patterns of soil texture as well as transpiration and precipitation indices as co-variables. Spatial patterns of surface soil moisture are mostly determined by the structure of the soil properties (soil type) during winter, early growing season and after harvest of all crops. Later in the growing season, after establishment of a closed canopy the dependence of the soil moisture patterns on soil texture patterns becomes smaller and diminishes quickly after precipitation events, due to differences of the transpiration rate of the different crops. When changing the spatial scale of the analysis, the highest autocorrelation values can be found on a grid cell size between 450 and 1200 meters. Thus, small scale variability of transpiration induced by the land use pattern almost averages out, leaving the larger scale structure of soil properties to explain the soil moisture patterns.

Bringing life to soil physical processes

NASA Astrophysics Data System (ADS)

Hallett, P. D.

2013-12-01

When Oklahoma's native prairie grass roots were replaced by corn, the greatest environmental (and social) disaster ever to hit America ensued. The soils lost structure, physical binding by roots was annihilated and when drought came the Great Dust Bowl commenced. This form of environmental disaster has repeated over history and although not always apparent, similar processes drive the degradation of seemingly productive farmland and forests. But just as negative impacts on biology are deleterious to soil physical properties, positive impacts could reverse these trends. In finding solutions to soil sustainability and food security, we should be able to exploit biological processes to improve soil physical properties. This talk will focus on a quantitative understanding of how biology changes soil physical behaviour. Like the Great Dust Bowl, it starts with reinforcement mechanisms by plant roots. We found that binding of soil by cereal (barley) roots within 5 weeks of planting can more than double soil shear strength, with greater plant density causing greater reinforcement. With time, however, the relative impact of root reinforcement diminishes due to root turnover and aging of the seedbed. From mechanical tests of individual roots, reasonable predictions of reinforcement by tree roots are possible with fibre bundle models. With herbaceous plants like cereals, however, the same parameters (root strength, stiffness, size and distribution) result in a poor prediction. We found that root type, root age and abiotic factors such as compaction and waterlogging affect mechanical behaviour, further complicating the understanding and prediction of root reinforcement. For soil physical stability, the interface between root and soil is an extremely important zone in terms of resistance of roots to pull-out and rhizosphere formation. Compounds analogous to root exudates have been found with rheological tests to initially decrease the shear stress where wet soils flow, but after decomposition of these exudates by microbes the shear stress increases. This suggests an initial dispersion, followed by aggregation of the soil, which explains the structural arrangement of soil particles in the rhizosphere observed by microscopy. Dispersion of soil minerals in the root zone is important to release bound nutrients from mineral surfaces. Using fracture mechanics we measured large impacts of biological exudates on the toughness and interparticle bond energy of soils. Now novel tests are being developed to quantify interparticle bonding by biological exudates on single and multiple particle contacts, including mechanical test specimens that can be inoculated with specific bacteria or fungi. This will allow for clay mineralogy, water potential and solution chemistry impacts on interparticle bonding to be quantified directly. Wettability experiments with the same samples measure hydrological properties such as contact angle. Basic information from these tests will help explain biological processes that drive soil structure formation and stabilisation, providing data for models of soil structure dynamics.

Spatial analysis of subsoil compaction on cultivated land by means of penetrometry, electrical resistence tomography and X-ray computed tomography

NASA Astrophysics Data System (ADS)

Zumr, David; Vláčilová, Markéta; Dostál, Tomáš; Jeřábek, Jakub; Sobotková, Martina; Sněhota, Michal

2015-04-01

Soil compaction is a well recognized phenomena in the agricultural land. Various effects can alter the degree of the compaction in the field. The topsoil is regularly loosened due to agrotechnical operations, but the subsoil remains usually compacted. Various studies show increasing bulk density and decreasing saturated hydraulic conductivity in the plough pan, even though some authors argue that it does not have to be always the case due to presence of bio-macropores. Hence the structural properties of the subsoil and the spatial distribution of the compacted layer depth within the cultivated fields are important factors influencing soil water regime, nutrients regime and runoff generation. The aim of the contribution is to present the results of the monitoring of the plough pan depth spatial distribution at the experimental catchment Nucice (Central Bohemia, Czech Republic). The soils are classified as Luvisols and Cambisols with a loamy Ap horizon (0.1 - 0.2 m deep) underlined by a silty and silty-clay B horizon. The content of clay particles in the topsoil is around 8%. The soil has low inner aggregate (soil matrix) hydraulic conductivity, with measured values of approximately 0.1 - 2 cm d-1. The bulk topsoil saturated hydraulic conductivity (Ks) is significantly higher and varies depending on the season. To observe the divide between topsoil and subsoil layers in detail and to be able to compare the soil structure and pore networks of both layers we inspected undisturbed soil samples with X-ray computed tomography. The divide between the conservatively tilled topsoil and the subsoil is clearly observable also on terrain. To identify its exact position we implemented a combination of penetrometry, soil sampling and electrical resistance tomography (ERT). The penetration tests accompanied by soil probing were done in an irregular network across the whole catchment based on the slopes and distance to the stream. Several 2D ERT measurements were done locally on a plot of approximately 10 x 50 m. Dipole-dipole scheme with electrode span of 10 cm was used. The results obtained by different techniques are in a good agreement with observed plough pan position. The contribution was prepared within the project of Czech Science Foundation No. 13-20388P. We thank Johannes Koestel from SLU Uppsala for his great help during CT imaging of the soil samples.

Long-term behavior of integral abutment bridges : appendix B, SR18 over the Mississinewa River Bridge soil borings.

DOT National Transportation Integrated Search

2011-01-01

Integral abutment (IA) construction has become the preferred method over conventional construction for use with typical highway bridges. However, the use of these structures is limited due to state mandated length and skew limitations. To expand thei...

[Research progress on wind erosion control with polyacrylamide (PAM).

PubMed

Li, Yuan Yuan; Wang, Zhan Li

2016-03-01

Soil wind erosion is one of the main reasons for soil degradation in the northwest region of China. Polyacrylamide (PAM), as an efficient soil amendment, has gained extensive attention in recent years since it is effective in improving the structure of surface soil due to its special physical and chemical properties. This paper introduced the physical and chemical properties of PAM, reviewed the effects of PAM on soil wind erosion amount and threshold wind velocity, as well as the effect differences of PAM in soil wind erosion control under conditions of various methods and doses. Its effect was proved by comparing with other materials in detail. Furthermore, we analyzed the mecha-nism of wind erosion control with PAM according to its influence on soil physical characteristics. Comprehensive analysis showed that, although some problems existed in wind erosion control with (PAM), PAM as a sand fixation agent, can not only enhance the capacity of the soil resis-tance to wind erosion, but also improve soil physical properties to form better soil conditions. Besides, we proposed that combination of PAM and plant growth would increase the survival rate of plants greatly, control soil wind erosion in wind-erosive areas, and improve the quality of the ecological environment construction. Thus, PAM has practically important significance and wide application prospect in controlling soil wind erosion.

Transfer of radiocesium from rhizosphere soil to four cruciferous vegetables in association with a Bacillus pumilus strain and root exudation.

PubMed

Aung, Han Phyo; Mensah, Akwasi Dwira; Aye, Yi Swe; Djedidi, Salem; Oikawa, Yosei; Yokoyama, Tadashi; Suzuki, Sohzoh; Dorothea Bellingrath-Kimura, Sonoko

2016-11-01

This study was carried out to assess the effect of Bacillus pumilus on the roots of four cruciferous vegetables with different root structures in regard to enhancement of 137 Cs bioavailability in contaminated rhizosphere soil. Results revealed that B. pumilus inoculation did not enhance the plant biomass of vegetables, although it increased root volume and root surface areas of all vegetables except turnip. The pH changes due to rhizosphere acidification by B. pumilus inoculation and root exudation did not affect the bioavailability of 137 Cs. However, concentrations of 137 Cs in plant tissues and soil-to-plant transfer values increased as a result of the larger root volume and root surface area of vegetables due to inoculation. Moreover, leafy vegetables, which possessed larger root volume and root surface areas, had a higher 137 Cs transfer value than root vegetables. Copyright © 2016 Elsevier Ltd. All rights reserved.

Fate and effect of imidacloprid on vermicompost-amended soils under dissimilar conditions: Risk for soil functions, structure, and bacterial abundance.

PubMed

Castillo Diaz, Jean Manuel; Martin-Laurent, Fabrice; Beguet, Jérèmie; Nogales, Rogelio; Romero, Esperanza

2017-02-01

The fate and impact of pesticide on soil depend partly on the agricultural practices, such as prior treatment with pesticide and/or organic amendments. As a means of determining how the previous soil conditions can affect the fate of imidacloprid (IMI) and its effect on soil functions, experiments were made with soil samples, double-amended or not with either vine-shoot (W) or olive cake (O) vermicompost or contaminated or not with IMI. These soil samples, incubated for 3months, were placed in two microcosms (M1 with the pre-amended soils and M2 with the pre-exposed soils), treated with IMI and amended with vermicomposts and then incubated for 3months. The IMI distribution on soil fractions, sorption processes, dissipation kinetics, and biochemical as well as genetic structure and bacterial abundance were determined to assess the fate and impact of IMI on the soil. The addition of W vermicompost to the soil reduced the IMI availability. The dissipation kinetic in soils from M1 and M2 followed, respectively, a single first-order and a double first-order in parallel models. The lowest IMI persistence corresponded to the soil from M2 amended with O-vermicompost with DT50 and DT90 values of 67d and 265d, while in the other soils 90% dissipation required >512d. The vermicomposts-amended contaminated soils increased the dehydrogenase activity by 2- and 4-fold respect the control soils. However, the urease activity decreased due to the IMI influence. The changes in the bacterial community in the contaminated soil amended with O-vermicompost during incubation were correlated with the dissipation rate constant of IMI, suggesting a better tolerance of microorganisms to IMI. Thus, in the soil contaminated with IMI, the amendment with the vermicompost from olive cake can mitigate the impact of this insecticide on soil functions and promote its depuration capability while minimizing environmental risks. Copyright © 2016 Elsevier B.V. All rights reserved.

Accuracy of quantitative visual soil assessment

NASA Astrophysics Data System (ADS)

van Leeuwen, Maricke; Heuvelink, Gerard; Stoorvogel, Jetse; Wallinga, Jakob; de Boer, Imke; van Dam, Jos; van Essen, Everhard; Moolenaar, Simon; Verhoeven, Frank; Stoof, Cathelijne

2016-04-01

Visual soil assessment (VSA) is a method to assess soil quality visually, when standing in the field. VSA is increasingly used by farmers, farm organisations and companies, because it is rapid and cost-effective, and because looking at soil provides understanding about soil functioning. Often VSA is regarded as subjective, so there is a need to verify VSA. Also, many VSAs have not been fine-tuned for contrasting soil types. This could lead to wrong interpretation of soil quality and soil functioning when contrasting sites are compared to each other. We wanted to assess accuracy of VSA, while taking into account soil type. The first objective was to test whether quantitative visual field observations, which form the basis in many VSAs, could be validated with standardized field or laboratory measurements. The second objective was to assess whether quantitative visual field observations are reproducible, when used by observers with contrasting backgrounds. For the validation study, we made quantitative visual observations at 26 cattle farms. Farms were located at sand, clay and peat soils in the North Friesian Woodlands, the Netherlands. Quantitative visual observations evaluated were grass cover, number of biopores, number of roots, soil colour, soil structure, number of earthworms, number of gley mottles and soil compaction. Linear regression analysis showed that four out of eight quantitative visual observations could be well validated with standardized field or laboratory measurements. The following quantitative visual observations correlated well with standardized field or laboratory measurements: grass cover with classified images of surface cover; number of roots with root dry weight; amount of large structure elements with mean weight diameter; and soil colour with soil organic matter content. Correlation coefficients were greater than 0.3, from which half of the correlations were significant. For the reproducibility study, a group of 9 soil scientists and 7 farmers carried out quantitative visual observations all independently from each other. All observers assessed five sites, having a sand, peat or clay soil. For almost all quantitative visual observations the spread of observed values was low (coefficient of variation < 1.0), except for the number of biopores and gley mottles. Furthermore, farmers' observed mean values were significantly higher than soil scientists' mean values, for soil structure, amount of gley mottles and compaction. This study showed that VSA could be a valuable tool to assess soil quality. Subjectivity, due to the background of the observer, might influence the outcome of visual assessment of some soil properties. In countries where soil analyses can easily be carried out, VSA might be a good replenishment to available soil chemical analyses, and in countries where it is not feasible to carry out soil analyses, VSA might be a good start to assess soil quality.

Impact of natural and calcined starfish (Asterina pectinifera) on the stabilization of Pb, Zn and As in contaminated agricultural soil.

PubMed

Lim, Jung Eun; Sung, Jwa Kyung; Sarkar, Binoy; Wang, Hailong; Hashimoto, Yohey; Tsang, Daniel C W; Ok, Yong Sik

2017-04-01

Metal stabilization using soil amendments is an extensively applied, economically viable and environmentally friendly remediation technique. The stabilization of Pb, Zn and As in contaminated soils was evaluated using natural starfish (NSF) and calcined starfish (CSF) wastes at different application rates (0, 2.5, 5.0 and 10.0 wt%). An incubation study was conducted over 14 months, and the efficiency of stabilization for Pb, Zn and As in soil was evaluated by the toxicity characteristic leaching procedure (TCLP) test. The TCLP-extractable Pb was reduced by 76.3-100 and 91.2-100 % in soil treated with NSF and CSF, respectively. The TCLP-extractable Zn was also reduced by 89.8-100 and 93.2-100 % in soil treated with NSF and CSF, respectively. These reductions could be associated with the increased metal adsorption and the formation of insoluble metal precipitates due to increased soil pH following application of the amendments. However, the TCLP-extractable As was increased in the soil treated with NSF, possibly due to the competitive adsorption of phosphorous. In contrast, the TCLP-extractable As in the 10 % CSF treatment was not detectable because insoluble Ca-As compounds might be formed at high pH values. Thermodynamic modeling by visual MINTEQ predicted the formation of ettringite (Ca 6 Al 2 (SO 4 ) 3 (OH) 12 ·26H 2 O) and portlandite (Ca(OH) 2 ) in the 10 % CSF-treated soil, while SEM-EDS analysis confirmed the needle-like structure of ettringite in which Pb was incorporated and stabilized in the 10 % CSF treatment.

Long-term simulations of water and isoproturon dynamics in a heterogeneous soil receiving different urban waste composts

NASA Astrophysics Data System (ADS)

Filipović, Vilim; Coquet, Yves; Pot, Valérie; Romić, Davor; Benoit, Pierre; Houot, Sabine

2016-04-01

Implementing various compost amendments and tillage practices has a large influence on soil structure and can create heterogeneities at the plot/field scale. While tillage affects soil physical properties, compost application influences also chemical properties like pesticide sorption and degradation. A long-term field experiment called "QualiAgro" (https://www6.inra.fr/qualiagro_eng/), conducted since 1998 aims at characterizing the agronomic value of urban waste composts and their environmental impacts. A modeling study was carried out using HYDRUS-2D for the 2004-2010 period to confront the effects of two different compost types combined with the presence of heterogeneities due to tillage in terms of water and isoproturon dynamics in soil. A municipal solid waste compost (MSW) and a co-compost of sewage sludge and green wastes (SGW) have been applied to experimental plots and compared to a control plot without any compost addition (CONT). Two wick lysimeters, 5 TDR probes, and 7 tensiometers were installed per plot to monitor water and isoproturon dynamics. In the ploughed layer, four zones with differing soil structure were identified: compacted clods (Δ), non-compacted soil (Γ), interfurrows (IF), and the plough pan (PP). These different soil structural zones were implemented into HYDRUS-2D according to field observation and using measured soil hydraulic properties. Lysimeter data showed (2004 -2010 period) that the CONT plot had the largest cumulative water outflow (1388 mm) compared to the MSW plot (962 mm) and SGW plot (979 mm). HYDRUS-2D was able to describe cumulative water outflow after calibration of soil hydraulic properties, for the whole 2004-2010 period with a model efficiency value of 0.99 for all three plots. Isoproturon leaching showed had the largest cumulative value in the CONT plot (21.31 μg) while similar cumulated isoproturon leachings were measured in the SGW (0.663 μg) and MSW (0.245 μg) plots. The model was able to simulate isoproturon leaching patterns except for the large preferential flow events that were observed in the MSW and CONT plots. The timing of these preferential flow events could be reproduced by the model but not their magnitude. Additional simulations were carried out, assuming temporal variation of the IPU degradation rate to explain the leaching events observed at the end of the monitoring period (2010). Modeling results indicate that spatial and temporal variations in pesticide degradation rate due to tillage and compost application play a major role in the dynamics of isoproturon leaching. Both types of compost were found to reduce isoproturon leaching on the long-term (6 years) duration of the field experiment. Keywords: Compost amendment; Soil heterogeneity; Conventional tillage; Water flow; Isoproturon; HYDRUS-2D

Modeling of Heavy Metal Transformation in Soil Ecosystem

NASA Astrophysics Data System (ADS)

Kalinichenko, Kira; Nikovskaya, Galina N.

2017-04-01

The intensification of industrial activity leads to an increase in heavy metals pollution of soils. In our opinion, sludge from biological treatment of municipal waste water, stabilized under aerobic-anaerobic conditions (commonly known as biosolid), may be considered as concentrate of natural soil. In their chemical, physical and chemical and biological properties these systems are similar gel-like nanocomposites. These contain microorganisms, humic substances, clay, clusters of nanoparticles of heavy metal compounds, and so on involved into heteropolysaccharides matrix. It is known that microorganisms play an important role in the transformation of different nature substances in soil and its health maintenance. The regularities of transformation of heavy metal compounds in soil ecosystem were studied at the model of biosolid. At biosolid swelling its structure changing (gel-sol transition, weakening of coagulation contacts between metal containing nanoparticles, microbial cells and metabolites, loosening and even destroying of the nanocomposite structure) can occur [1, 2]. The promotion of the sludge heterotrophic microbial activities leads to solubilization of heavy metal compounds in the system. The microbiological process can be realized in alcaligeneous or acidogeneous regimes in dependence on the type of carbon source and followed by the synthesis of metabolites with the properties of flocculants and heavy metals extragents [3]. In this case the heavy metals solubilization (bioleaching) in the form of nanoparticles of hydroxycarbonate complexes or water soluble complexes with oxycarbonic acids is observed. Under the action of biosolid microorganisms the heavy metals-oxycarbonic acids complexes can be transformed (catabolised) into nano-sizing heavy metals- hydroxycarbonates complexes. These ecologically friendly complexes and microbial heteropolysaccharides are able to interact with soil colloids, stay in the top soil profile, and improve soil structure due to the formation of water-stable aggregates. The alkaligeneous microbiological process in natural ecosystems by co-metabolism of appropriate carbon source is more advantages for environment. Thus the possibility of solubilization of heavy metal compounds in the soil due to stimulating its biological activities of native microorganisms is proved. The studies on the interactions in the system of sludge solid has allowed to develop the "green" biotechnological process of heavy metals solubilization in contaminated soils and sludges. 1. Kalinichenko KV, Nikovskaya GN, and Ulberg ZR (2012) Bioextraction of heavy metals from colloidal sludge systems. Colloid Journ. 74(5) : 553-557. 2. Kalinichenko KV, Nikovskaya GN, and Ulberg ZR (2013) Changes in the surface properties and stability of biocolloids of a sludge system upon extraction of heavy metals. Colloid Journ. 75(3) : 274-278. 3. Nikovskaya GN, Kalinichenko KV (2013) Bioleaching of heavy metals from sludge after biological treatment of municipal effluent. Journ. of Water Chem. and Techn. 35(2) : 80-85.

Characterization of soil phosphorus in a fire-affected forest Cambisol by chemical extractions and (31)P-NMR spectroscopy analysis.

PubMed

Turrion, María-Belén; Lafuente, Francisco; Aroca, María-José; López, Olga; Mulas, Rafael; Ruipérez, Cesar

2010-07-15

This study was conducted to investigate the long-term effects of fire on soil phosphorus (P) and to determine the efficiency of different procedures in extracting soil P forms. Different P forms were determined: labile forms (Olsen-P, Bray-P, and P extracted by anion exchange membranes: AEM-P); moderately labile inorganic and organic P, obtained by NaOH-EDTA extraction after removing the AEM-P fraction; and total organic and inorganic soil P. (31)P-NMR spectroscopy was used to characterize the structure of alkali-soluble P forms (orthophosphate, monoester, pyrophosphate, and DNA). The studied area was a Pinus pinaster forest located at Arenas de San Pedro (southern Avila, Spain). The soils were Dystric Cambisols over granites. Soil samples were collected at 0-2 cm, 2-5 cm, and 10-15 cm depths, two years after a fire in the burned area and in an adjacent unburned forest area. Fire increased the total N, organic C, total P, and organic and inorganic P content in the surface soil layer. In burned soil, the P extracted by the sequential procedure (AEM and NaOH+EDTA) was about 95% of the total P. Bray extraction revealed a fire-induced increase in the sorption surfaces. Analysis by chemical methods overestimated the organic P fraction in the EDTA-NaOH extract in comparison with the determination by ignition procedure. This overestimation was more important in the burned than unburned soil samples, probably due to humification promoted by burning, which increased P sorption by soil particles. The fire-induced changes on the structure of alkali-soluble P were an increase in orthophosphate-P and a decrease in monoester-P and DNA-P. Copyright 2010 Elsevier B.V. All rights reserved.

Characteristics and influencing factors of tetrachloroethylene sorption-desorption on soil and its components.

PubMed

Qiu, Zhaofu; Yang, Weiwei; He, Long; Zhao, Zhexuan; Lu, Shuguang; Sui, Qian

2016-02-01

To investigate the effects of soil structure, soil organic carbon (SOC), minerals, initial tetrachloroethylene (PCE) concentration (C0), and ionic strength (Ci) on PCE sorption-desorption, six types of soil were adopted as adsorbents, including two types of natural soil and four types of soil with most of the "soft carbon" pre-treated by H2O2 or with all SOC removed from the original soil by 600 °C ignition. The results showed that all of the sorption-desorption isotherms of PCE were non-linear within the experimental range, and the H2O2-treated samples exhibited higher non-linear sorption isotherms than those of the original soils. The hysteresis index of PCE sorption to original soil is less pronounced than that of the H2O2-treated and 600 °C-heated samples due to the entrapment of sorbate molecules in the "hard carbon" domain, together with the meso- and microporous structures within the 600 °C-heated samples. Both SOC and minerals have impacts on the sorption-desorption of PCE, and the sorption-desorption contribution rate of minerals increased with decreasing SOC content. C0 has almost no influence on the sorption to minerals of the soils, but the contribution rate of minerals decreased with increasing C0 in the desorption stage. As a result of the salting-out effect, PCE sorption capacity was increased by increasing Ci, especially when Ci ≥ 0.1 M. Moreover, desorption increased and hysteresis weakened with increasing Ci, except for the 600 °C-heated samples. In addition, no significant effect of Ci on desorption of PCE and no hysteresis was observed in this experimental range for the 600 °C-heated samples. Copyright © 2015 Elsevier Ltd. All rights reserved.

Thin soil layer of green roof systems studied by X-Ray CT

NASA Astrophysics Data System (ADS)

Šácha, Jan; Jelínková, Vladimíra; Dohnal, Michal

2016-04-01

The popular non-invasive visualization technique of X-ray computed tomography (CT) has been used for 3D examination of thin soil layer of vegetated roof systems. The two categories of anthropogenic soils, usually used for green roof systems, were scanned during the first months after green roof system construction. First was represented by stripped topsoil with admixed crushed bricks and was well graded in terms of particle size distribution. The other category represented a commercial lightweight technogenic substrate. The undisturbed soil samples of total volume of 62.8 ccm were studied be means of X-ray Computed Tomography using X-ray Inspection System GE Phoenix Nanomex 180T with resulting spatial resolution about 57 μm in all directions. For both soil categories visible macroporosity, connectivity (described by the Euler characteristic), dimensionless connectivity and critical cross section of pore network were determined. Moreover, the temporal structural changes of studied soils were discussed together with heat and water regime of the green roof system. The analysis of CT images of anthropogenic soils was problematic due to the different X-ray attenuation of individual constituents. The correct determination of the threshold image intensity differentiating the soil constituents from the air phase had substantial importance for soil pore network analyses. However, X-ray CT derived macroporosity profiles reveal significant temporal changes notably in the soil comprised the stripped topsoil with admixed crushed bricks. The results implies that the technogenic substrate is structurally more stable over time compared to the stripped topsoil. The research was realized as a part of the University Centre for Energy Efficient Buildings supported by the EU and with financial support from the Czech Science Foundation under project number 14-10455P.

Biomimetic Hydrogel Composites for Soil Stabilization and Contaminant Mitigation.

PubMed

Zhao, Zhi; Hamdan, Nasser; Shen, Li; Nan, Hanqing; Almajed, Abdullah; Kavazanjian, Edward; He, Ximin

2016-11-15

We have developed a novel method to synthesize a hyper-branched biomimetic hydrogel network across a soil matrix to improve the mechanical strength of the loose soil and simultaneously mitigate potential contamination due to excessive ammonium. This method successfully yielded a hierarchical structure that possesses the water retention, ion absorption, and soil aggregation capabilities of plant root systems in a chemically controllable manner. Inspired by the robust organic-inorganic composites found in many living organisms, we have combined this hydrogel network with a calcite biomineralization process to stabilize soil. Our experiments demonstrate that poly(acrylic acid) (PAA) can work synergistically with enzyme-induced carbonate precipitation (EICP) to render a versatile, high-performance soil stabilization method. PAA-enhanced EICP provides multiple benefits including lengthening of water supply time, localization of cementation reactions, reduction of harmful byproduct ammonium, and achievement of ultrahigh soil strength. Soil crusts we have obtained can sustain up to 4.8 × 10 3 kPa pressure, a level comparable to cementitious materials. An ammonium removal rate of 96% has also been achieved. These results demonstrate the potential for hydrogel-assisted EICP to provide effective soil improvement and ammonium mitigation for wind erosion control and other applications.

Effects of soil tillage on the microwave emission of soils

NASA Technical Reports Server (NTRS)

Jackson, T. J.; Koopman, G. J.; Oneill, P. E.; Wang, J. R.

1985-01-01

In order to understand the interactions of soil properties and microwave emission better, a series of field experiments were conducted in 1984. Small plots were measured with a truck-mounted passive microwave radiometer operating at 1.4 GHz. These data were collected concurrent with ground observations of soil moisture and bulk density. Treatment effects studied included different soil moisture contents and bulk densities. Evaluations of the data have shown that commonly used models of the dielectric properties of wet soils do not explain the observations obtained in these experiments. This conclusion was based on the fact that the roughness parameters determined through optimization were significantly larger than those observed in similar investigations. These discrepancies are most likely due to the soil structure. Commonly used models assume a homogeneous three phase mixture of soil solids, air and water. Under tilled conditions the soil is actually a two phase mixture of aggregates and voids. Appropriate dielectric models for this tilled condition were evaluated and found to explain the observations. These results indicate that previous conclusions concerning the effects of surface roughness in tilled fields may be incorrect, and they may explain some of the inconsistencies encountered in roughness modeling.

Quantification of the inevitable: the influence of soil macrofauna on soil water movement in rehabilitated open-cut mine land

NASA Astrophysics Data System (ADS)

Arnold, S.; Williams, E. R.

2015-08-01

Recolonisation of soil by macrofauna (especially ants and termites) in rehabilitated open-cut mine sites is inevitable. In these highly disturbed landscapes, soil invertebrates play a major role in soil development (macropore configuration, nutrient cycling, bioturbation, etc.) and can influence hydrological processes such as infiltration and seepage. Understanding and quantifying these ecosystem processes is important in rehabilitation design, establishment and subsequent management to ensure progress to the desired end-goal, especially in waste cover systems designed to prevent water reaching and transporting underlying hazardous waste materials. However, soil macrofauna are typically overlooked during hydrological modelling, possibly due to uncertainties on the extent of their influence, which can lead to failure of waste cover systems or rehabilitation activities. We propose that scientific experiments under controlled conditions are required to quantify (i) macrofauna - soil structure interactions, (ii) functional dynamics of macrofauna taxa, and (iii) their effects on macrofauna and soil development over time. Such knowledge would provide crucial information for soil water models, which would increase confidence in mine waste cover design recommendations and eventually lead to higher likelihood of rehabilitation success of open-cut mining land.

Hydropedological interpretation of arid soilscapes, South Africa

NASA Astrophysics Data System (ADS)

Tinnefeld, Martin; Van Tol, Jacobus; Le Roux, Pieter

2017-04-01

Hydropedological investigations in arid regions are scarce due to the low the low contribution of these areas to water resources. Infrequent rainfall and few flow events also complicates measurements hydrological studies. Hydropedological studies, relating soil morphological properties and their spatial distribution to hydrological response, have been studied in detail in semi-arid, temperate, and sub-humid regions. In this paper, we investigated the relation between soil morphological properties and selected hydrological properties of soils in an arid landscape. We also studied the spatial distribution of the morphological properties to conceptualise the hydrological behaviour of different soilscapes in the area. A total of 806 soil profiles, covering an area of 4836 ha in the Northern Cape Province of South Africa were described and classified. The geology is dominated by Dwyka tillite overlain by aeolian sands with scattered Dolerite buttes. Thirteen modal profiles, representing the dominant soils types were selected, sampled at horizon level, and analysed for pH, CEC, iron, manganese, carbonate content. In situ measurements of saturated and near saturated (tension) hydraulic conductivity (Ks) were conducted to determine the water conducting macroporosity (WCM). Undisturbed cores were collected on which water retention characteristics were determined under laboratory conditions. Results indicate that dry soil colour, degree of structure development and the presence, absence, and abundance of carbonates as well as the degree of precipitation, are important indicators of hydrological response. For example; grey soils typically have lower Ks with higher storage capacity than soils dominated by red colours, whereas abundant carbonate precipitations in the soil matrix have lower WCM due to clogging of macropores. The dominant soil distribution pattern indicates that rapid vertical flow, through and out of the pedon, might contribute to recharge of an accumulative soil lateral flow at soil/rock interface on upper and midslope positions. Abundant carbonate precipitations decrease in consistency to valley bottom positions, indicating that this area serves as a periodic store of water during and after rain events.

Loss of soil (macro)fauna due to the expansion of Brazilian sugarcane acreage.

PubMed

Franco, André L C; Bartz, Marie L C; Cherubin, Maurício R; Baretta, Dilmar; Cerri, Carlos E P; Feigl, Brigitte J; Wall, Diana H; Davies, Christian A; Cerri, Carlos C

2016-09-01

Land use changes (LUC) from pasture to sugarcane (Saccharum spp.) crop are expected to add 6.4Mha of new sugarcane land by 2021 in the Brazilian Cerrado and Atlantic Forest biomes. We assessed the effects of these LUC on the abundance and community structure of animals that inhabit soils belowground through a field survey using chronosequences of land uses comprising native vegetation, pasture, and sugarcane along a 1000-km-long transect across these two major tropical biomes in Brazil. Macrofauna community composition differed among land uses. While most groups were associated with samples taken in native vegetation, high abundance of termites and earthworms appeared associated with pasture soils. Linear mixed effects analysis showed that LUC affected total abundance (X(2)(1)=6.79, p=0.03) and taxa richness (X(2)(1)=6.08, p=0.04) of soil macrofauna. Abundance increased from 411±70individualsm(-2) in native vegetation to 1111±202individualsm(-2) in pasture, but decreased sharply to 106±24individualsm(-2) in sugarcane soils. Diversity decreased 24% from native vegetation to pasture, and 39% from pasture to sugarcane. Thus, a reduction of ~90% in soil macrofauna abundance, besides a loss of ~40% in the diversity of macrofauna groups, can be expected when sugarcane crops replace pasture in Brazilian tropical soils. In general, higher abundances of major macrofauna groups (ants, coleopterans, earthworms, and termites) were associated with higher acidity and low contents of macronutrients and organic matter in soil. This study draws attention for a significant biodiversity loss belowground due to tropical LUC in sugarcane expansion areas. Given that many groups of soil macrofauna are recognized as key mediators of ecosystem processes such as soil aggregation, nutrients cycling and soil carbon storage, our results warrant further efforts to understand the impacts of altering belowground biodiversity and composition on soil functioning and agriculture performance across LUC in the tropics. Copyright © 2016 Elsevier B.V. All rights reserved.

Patterns of Community Change among Ammonia Oxidizers in Meadow Soils upon Long-Term Incubation at Different Temperatures

PubMed Central

Avrahami, Sharon; Conrad, Ralf

2003-01-01

The effect of temperature on the community structure of ammonia-oxidizing bacteria was investigated in three different meadow soils. Two of the soils (OMS and GMS) were acidic (pH 5.0 to 5.8) and from sites in Germany with low annual mean temperature (about 10°C), while KMS soil was slightly alkaline (pH 7.9) and from a site in Israel with a high annual mean temperature (about 22°C). The soils were fertilized and incubated for up to 20 weeks in a moist state and as a buffered (pH 7) slurry amended with urea at different incubation temperatures (4 to 37°C). OMS soil was also incubated with less fertilizer than the other soils. The community structure of ammonia oxidizers was analyzed before and after incubation by denaturing gradient gel electrophoresis (DGGE) of the amoA gene, which codes for the α subunit of ammonia monooxygenase. All amoA gene sequences found belonged to the genus Nitrosospira. The analysis showed community change due to temperature both in moist soil and in the soil slurry. Two patterns of community change were observed. One pattern was a change between the different Nitrosospira clusters, which was observed in moist soil and slurry incubations of GMS and OMS. Nitrosospira AmoA cluster 1 was mainly detected below 30°C, while Nitrosospira cluster 4 was predominant at 25°C. Nitrosospira clusters 3a, 3b, and 9 dominated at 30°C. The second pattern, observed in KMS, showed a community shift predominantly within a single Nitrosospira cluster. The sequences of the individual DGGE bands that exhibited different trends with temperature belonged almost exclusively to Nitrosospira cluster 3a. We conclude that ammonia oxidizer populations are influenced by temperature. In addition, we confirmed previous observations that N fertilizer also influences the community structure of ammonia oxidizers. Thus, Nitrosospira cluster 1 was absent in OMS soil treated with less fertilizer, while Nitrosospira cluster 9 was only found in the sample given less fertilizer. PMID:14532075

Peculiarities of high-altitude landscapes formation in the Small Caucasus mountains

NASA Astrophysics Data System (ADS)

Trifonova, Tatiana

2014-05-01

Various mountain systems differ in character of landscapes and soil. Basic problem of present research: conditions and parameters determining the development of various landscapes and soils in mountain areas. Our research object is the area of Armenia where Small Caucasus, a part of Armenian upland is located. The specific character of the area is defined by the whole variety of all mountain structures like fold, block folding mountain ridges, volcanic upland, individual volcanoes, and intermountain depressions. As for the climate, the area belongs to dry subtropics. We have studied the peculiarities of high-altitude landscapes formation and mountain river basins development. We have used remote sensing data and statistic database of climatic parameters in this research. Field observations and landscape pictures analysis of space images allow distinguishing three types of mountain geosystems clearly: volcanic massifs, fold mountainous structures and closed high mountain basins - area of the lakes. The distribution of precipitation according to altitude shows some peculiarities. It has been found that due to this factor the investigated mountain area may be divided into three regions: storage (fold) mountainous area; Ararat volcanic area (southern macro exposure); closed high mountainous basin-area of the lake Sevan. The mountainous nature-climatic vertical landscapes appear to be horizontally oriented and they are more or less equilibrium (stable) geosystems, where the stable functional relationship between the landscape components is formed. Within their limits, definite bioclimatic structure of soil is developed. Along the slopes of fold mountains specific landscape shapes like litho-drainage basins are formed. They are intensively developing like relatively independent vertical geosystems. Mechanism of basin formation is versatile resulting in formation of the polychronous soil mantle structure. Landscapes and soils within the basin are of a different age, since the permanent exogenic processes favor regular rejuvenation of the slope soils. The basin structure determines the soilscape, and morphological elements of the basin are also different. The factors playing the significant part in the formation of soil-mantle composition in the basin can be identified. It is shown that landscapes formation and soil structure in mountains are controlled by two superimposed natural processes, i.e. the formation of vertical zonality and the development of river lithodrainage basins. References Trifonova T.A., 2008. River drainage basin as self-regulated natural geosistem. Izv. Russian of Academy of Sciences, Series on geography, 1: 28-36. Trifonova T.A., 2005. Development of basin approach in pedological and ecological studies. Eurasian Soil Science, 9: 931-937

Edaphic, salinity, and stand structural trends in chronosequences of native and non-native dominated riparian forests along the Colorado River, USA

USGS Publications Warehouse

Merritt, David M.; Shafroth, Patrick B.

2012-01-01

Tamarix spp. are introduced shrubs that have become among the most abundant woody plants growing along western North American rivers. We sought to empirically test the long-held belief that Tamarix actively displaces native species through elevating soil salinity via salt exudation. We measured chemical and physical attributes of soils (e.g., salinity, major cations and anions, texture), litter cover and depth, and stand structure along chronosequences dominated by Tamarix and those dominated by native riparian species (Populus or Salix) along the upper and lower Colorado River in Colorado and Arizona/California, USA. We tested four hypotheses: (1) the rate of salt accumulation in soils is faster in Tamarix-dominated stands than stands dominated by native species, (2) the concentration of salts in the soil is higher in mature stands dominated by Tamarix compared to native stands, (3) soil salinity is a function of Tamarix abundance, and (4) available nutrients are more concentrated in native-dominated stands compared to Tamarix-dominated stands. We found that salt concentration increases at a faster rate in Tamarix-dominated stands along the relatively free-flowing upper Colorado but not along the heavily-regulated lower Colorado. Concentrations of ions that are known to be preferentially exuded by Tamarix (e.g., B, Na, and Cl) were higher in Tamarix stands than in native stands. Soil salt concentrations in older Tamarix stands along the upper Colorado were sufficiently high to inhibit germination, establishment, or growth of some native species. On the lower Colorado, salinity was very high in all stands and is likely due to factors associated with floodplain development and the hydrologic effects of river regulation, such as reduced overbank flooding, evaporation of shallow ground water, higher salt concentrations in surface and ground water due to agricultural practices, and higher salt concentrations in fine-textured sediments derived from naturally saline parent material.

The Effect of Land Use Change on Transformation of Relief and Modification of Soils in Undulating Loess Area of East Poland

PubMed Central

Rejman, Jerzy; Rafalska-Przysucha, Anna; Rodzik, Jan

2014-01-01

The change of primary forest areas into arable land involves the transformation of relief and modification of soils. In this study, we hypothesized that relatively flat loess area was largely transformed after the change of land use due to erosion. The modifications in soil pedons and distribution of soil properties were studied after 185 years of arable land use. Structure of pedons and solum depth were measured in 128 and soil texture and soil organic carbon in 39 points. Results showed that soils of noneroded and eroded profiles occupied 14 and 50%, respectively, and depositional soils 36% of the area. As a consequence, the clay, silt, and SOC concentration varied greatly in the plowed layer and subsoil. The reconstructed profiles of eroded soils and depositional soils without the accumulation were used to develop the map of past relief. The average inclination of slopes decreased from 4.3 to 2.2°, and slopes >5° vanished in the present topography. Total erosion was 23.8 Mg ha−1 year−1. From that amount, 88% was deposited within the study area, and 12% was removed outside. The study confirmed the hypothesis of the significant effect of the land use change on relief and soils in loess areas. PMID:25614883

Characterization of soils containing adipocere.

PubMed

Fiedler, S; Schneckenberger, K; Graw, M

2004-11-01

The formation of adipocere (commonly known as grave wax), a spontaneous inhibition of postmortem changes, has been extensively analyzed in forensic science. However, soils in which adipocere formation occurs have never been described in detail. Therefore, this study is intended as a first step in the characterization of soils containing adipocere. Two grave soils (Gleyic Anthrosols) that prevent the timely reuse of graves due to the occurrence of adipocere and a control soil (Gleyic Luvisol) were selected from a cemetery in the Central Black Forest (Southwest Germany). Descriptions of soil morphology and a wide assay of physical, chemical, and microbiologic soil characteristics were accomplished. In contrast to the control soil, the grave soils were characterized by lower bulk density and pH. The degradation of the soil structure caused by digging led to a higher water table and the expansion of the reducing conditions in the graves where the prevalent absence of oxygen in range of the coffins inhibited decomposition processes. Although the formation of adipocere led to the conservation of the buried corpses, phosphorus, dissolved organic carbon, and cadavarine leaching from the graves was observed. Microbial biomass and microbial activity were higher in the control soil and hence reflected the inert character of adipocere. The study results clearly show the need for additional approaches in forensic, pedologic, and microbiologic research.

Geomys bursars burrowing patterns: influence of season and food patch structure

USGS Publications Warehouse

Andersen, Douglas C.

1987-01-01

The relationship between belowground food resources and the pattern and pace of soil excavation by Geomys bursarius, the plains pocket gopher, was assessed during spring and autumn using replicated 18 x 18 m enclosures containing uniform arrays of food plants (Daucus carota) at spacings assumed to result in burrowing being energetically profitable (25 and 50 cm) or unprofitable (100 cm and empty). Soil excavation rate, measured in terms of either daily additions to tunnel length or volume, or the maximum volume excavated during a 3-d interval, varied greatly among individuals. No significant effect due to season or density of belowground plant biomass was detected when burrowing was profitable. Individuals readily initiated aboveground travel in unprofitable treatments. Soil bulk density was negatively related and animal body mass positively related to excavation rate. Individuals deposited from 41 to 87% of excavated soil on the ground surface; the remainder was used to backfill previously created tunnels or chambers. Plant size, but not plant spacing, affected the ratio of the volumes deposited aboveground and belowground. There was no evidence that animals in enclosures disturbed soil in a manner quantitatively or qualitatively different from free-ranging adults. The large proportions and absolute quantities (up to 30 L/d) of soil involved suggest that backfilling may affect ecosystem structure and functioning as much as surface mound-building.

High copper content in vineyard soils promotes modifications in photosynthetic parameters and morphological changes in the root system of 'Red Niagara' plantlets.

PubMed

Ambrosini, Vítor Gabriel; Rosa, Daniel José; Bastos de Melo, George Wellington; Zalamena, Jovani; Cella, Cesar; Simão, Daniela Guimarães; Souza da Silva, Leandro; Pessoa Dos Santos, Henrique; Toselli, Moreno; Tiecher, Tadeu Luis; Brunetto, Gustavo

2018-05-08

High copper (Cu) soil contents, due to the continuous vineyard application of Cu fungicides throughout the years, may impair the growth of the shoot and modify the structure of the root system. The current study aimed to investigate the threshold levels of available Cu in the soil causing toxicity effects in young grapevine plants of 'Red Niagara' cultivated in clay soils. Grapevine plantlets were cultivated in pots containing vineyard devoted soils with increasing contents of available Cu (25, 80, 100 and 165 mg kg -1 ), for 53 days. Photosynthesis and transpiration rates, and the quantum yield of photosystem II (Fv/Fm) were evaluated during the cultivation period. At the end of the experiment, the plant nutrient and leaf chlorophyll were determined, along with the anatomical analysis of the root system structure and plant dry matter determination. Higher levels of available Cu in the soil increased the apoplastic, symplastic and total fraction of the metal in the roots, reducing the other nutrients, especially in the shoots. Photosynthesis, transpiration rates and Fv/Fm were also reduced. Higher levels of Cu led to anatomical changes in the roots, that increased diameter, number of layers in the cortex, vascular cylinder and total root areas. It also resulted in reduced dry matter production by grapevines. Copyright © 2018 Elsevier Masson SAS. All rights reserved.

Enzymology under global change: organic nitrogen turnover in alpine and sub-Arctic soils.

PubMed

Weedon, James T; Aerts, Rien; Kowalchuk, George A; van Bodegom, Peter M

2011-01-01

Understanding global change impacts on the globally important carbon storage in alpine, Arctic and sub-Arctic soils requires knowledge of the mechanisms underlying the balance between plant primary productivity and decomposition. Given that nitrogen availability limits both processes, understanding the response of the soil nitrogen cycle to shifts in temperature and other global change factors is crucial for predicting the fate of cold biome carbon stores. Measurements of soil enzyme activities at different positions of the nitrogen cycling network are an important tool for this purpose. We review a selection of studies that provide data on potential enzyme activities across natural, seasonal and experimental gradients in cold biomes. Responses of enzyme activities to increased nitrogen availability and temperature are diverse and seasonal dynamics are often larger than differences due to experimental treatments, suggesting that enzyme expression is regulated by a combination of interacting factors reflecting both nutrient supply and demand. The extrapolation from potential enzyme activities to prediction of elemental nitrogen fluxes under field conditions remains challenging. Progress in molecular '-omics' approaches may eventually facilitate deeper understanding of the links between soil microbial community structure and biogeochemical fluxes. In the meantime, accounting for effects of the soil spatial structure and in situ variations in pH and temperature, better mapping of the network of enzymatic processes and the identification of rate-limiting steps under different conditions should advance our ability to predict nitrogen fluxes.

7 CFR 760.808 - General provisions.

Code of Federal Regulations, 2010 CFR

2010-01-01

... harvested production does not exist; (2) The loss is due to an ineligible cause of loss or practices, soil... provisions. (a) For calculations of loss, the participant's existing unit structure will be used as the basis... (2) For NAP covered crops, part 1437 of this title. (b) County average yield for loss calculations...

Soil properties and not inputs control carbon, nitrogen, phosphorus ratios in cropped soils in the long-term

NASA Astrophysics Data System (ADS)

Frossard, E.; Buchmann, N.; Bünemann, E. K.; Kiba, D. I.; Lompo, F.; Oberson, A.; Tamburini, F.; Traoré, O. Y. A.

2015-09-01

Stoichiometric approaches have been applied to understand the relationship between soil organic matter dynamics and biological nutrient transformations. However, very few studies explicitly considered the effects of agricultural management practices on soil C : N : P ratio. The aim of this study was to assess how different input types and rates would affect the C : N : P molar ratios of bulk soil, organic matter and microbial biomass in cropped soils in the long-term. Thus, we analysed the C, N and P inputs and budgets as well as soil properties in three long-term experiments established on different soil types: the Saria soil fertility trial (Burkina Faso), the Wagga Wagga rotation/stubble management/soil preparation trial (Australia), and the DOK cropping system trial (Switzerland). In each of these trials, there was a large range of C, N and P inputs which had a strong impact on element concentrations in soils. However, although C : N : P ratios of the inputs were highly variable, they had only weak effects on soil C : N : P ratios. At Saria, a positive correlation was found between the N : P ratio of inputs and microbial biomass, while no relation was observed between the nutrient ratios of inputs and soil organic matter. At Wagga Wagga, the C : P ratio of inputs was significantly correlated to total soil C : P, N : P and C : N ratios, but had no impact on the elemental composition of microbial biomass. In the DOK trial, a positive correlation was found between the C budget and the C to organic P ratio in soils, while the nutrient ratios of inputs were not related to those in the microbial biomass. We argue that these responses are due to differences in soil properties among sites. At Saria, the soil is dominated by quartz and some kaolinite, has a coarse texture, a fragile structure and a low nutrient content. Thus, microorganisms feed on inputs (plant residues, manure). In contrast, the soil at Wagga Wagga contains illite and haematite, is richer in clay and nutrients and has a stable structure. Thus, organic matter is protected from mineralization and can therefore accumulate, allowing microorganisms to feed on soil nutrients and to keep a constant C : N : P ratio. The DOK soil represents an intermediate situation, with high nutrient concentrations, but a rather fragile soil structure, where organic matter does not accumulate. We conclude that the study of C, N, and P ratios is important to understand the functioning of cropped soils in the long-term, but that it must be coupled with a precise assessment of element inputs and budgets in the system and a good understanding of the ability of soils to stabilize C, N and P compounds.

Soil Microbial Community Structure across a Thermal Gradient following a Geothermal Heating Event

PubMed Central

Norris, Tracy B.; Wraith, Jon M.; Castenholz, Richard W.; McDermott, Timothy R.

2002-01-01

In this study microbial species diversity was assessed across a landscape in Yellowstone National Park, where an abrupt increase in soil temperature had occurred due to recent geothermal activity. Soil temperatures were measured, and samples were taken across a temperature gradient (35 to 65°C at a 15-cm depth) that spanned geothermally disturbed and unimpacted soils; thermally perturbed soils were visually apparent by the occurrence of dead or dying lodgepole pine trees. Changes in soil microbial diversity across the temperature gradient were qualitatively assessed based on 16S rRNA sequence variation as detected by denaturing gradient gel electrophoresis (DGGE) using both ribosomal DNA (rDNA) and rRNA as PCR templates and primers specific for the Bacteria or Archaea domain. The impact of the major heating disturbance was apparent in that DGGE profiles from heated soils appeared less complex than those from the unaffected soils. Phylogenetic analysis of a bacterial 16S rDNA PCR clone library from a recently heated soil showed that a majority of the clones belonged to the Acidobacterium (51%) and Planctomyces (18%) divisions. Agar plate counts of soil suspensions cultured on dilute yeast extract and R2A agar media incubated at 25 or 50°C revealed that thermophile populations were two to three orders of magnitude greater in the recently heated soil. A soil microcosm laboratory experiment simulated the geothermal heating event. As determined by both RNA- and DNA-based PCR coupled with DGGE, changes in community structure (marked change in the DGGE profile) of soils incubated at 50°C occurred within 1 week and appeared to stabilize after 3 weeks. The results of our molecular and culture data suggest that thermophiles or thermotolerant species are randomly distributed in this area within Yellowstone National Park and that localized thermal activity selects for them. PMID:12450855

Soil microbial community structure across a thermal gradient following a geothermal heating event.

PubMed

Norris, Tracy B; Wraith, Jon M; Castenholz, Richard W; McDermott, Timothy R

2002-12-01

In this study microbial species diversity was assessed across a landscape in Yellowstone National Park, where an abrupt increase in soil temperature had occurred due to recent geothermal activity. Soil temperatures were measured, and samples were taken across a temperature gradient (35 to 65 degrees C at a 15-cm depth) that spanned geothermally disturbed and unimpacted soils; thermally perturbed soils were visually apparent by the occurrence of dead or dying lodgepole pine trees. Changes in soil microbial diversity across the temperature gradient were qualitatively assessed based on 16S rRNA sequence variation as detected by denaturing gradient gel electrophoresis (DGGE) using both ribosomal DNA (rDNA) and rRNA as PCR templates and primers specific for the Bacteria or Archaea domain. The impact of the major heating disturbance was apparent in that DGGE profiles from heated soils appeared less complex than those from the unaffected soils. Phylogenetic analysis of a bacterial 16S rDNA PCR clone library from a recently heated soil showed that a majority of the clones belonged to the Acidobacterium (51%) and Planctomyces (18%) divisions. Agar plate counts of soil suspensions cultured on dilute yeast extract and R2A agar media incubated at 25 or 50 degrees C revealed that thermophile populations were two to three orders of magnitude greater in the recently heated soil. A soil microcosm laboratory experiment simulated the geothermal heating event. As determined by both RNA- and DNA-based PCR coupled with DGGE, changes in community structure (marked change in the DGGE profile) of soils incubated at 50 degrees C occurred within 1 week and appeared to stabilize after 3 weeks. The results of our molecular and culture data suggest that thermophiles or thermotolerant species are randomly distributed in this area within Yellowstone National Park and that localized thermal activity selects for them.

The use of FDEM in hydrogeophysics: A review

NASA Astrophysics Data System (ADS)

Boaga, Jacopo

2017-04-01

Hydrogeophysics is a rapidly evolving discipline emerging from geophysical methods. Geophysical methods are nowadays able to illustrate not only the fabric and the structure of the underground, but also the subsurface processes that occur within it, as fluids dynamic and biogeochemical reactions. This is a growing wide inter-disciplinary field, specifically dedicated to revealing soil properties and monitoring processes of change due to soil/bio/atmosphere interactions. The discipline involves environmental, hydrological, agricultural research and counts application for several engineering purposes. The most frequently used techniques in the hydrogeophysical framework are the electric and electromagnetic methods because they are highly sensitive to soil physical properties such as texture, salinity, mineralogy, porosity and water content. Non-invasive techniques are applied in a number of problems related to characterization of subsurface hydrology and groundwater dynamic processes. Ground based methods, as electrical tomography, proved to obtain considerable resolution but they are difficult to extend to wider exploration purposes due to their logistical limitation. Methods that don't need electrical contact with soil can be, on the contrary, easily applied to broad areas. Among these methods, a rapidly growing role is played by frequency domain electro-magnetic (FDEM) survey. This is due thanks to the improvement of multi-frequency and multi-coils instrumentation, simple time-lapse repeatability, cheap and accurate topographical referencing, and the emerging development of inversion codes. From raw terrain apparent conductivity meter, FDEM survey is becoming a key tool for 3D soil characterization and dynamics observation in near surface hydrological studies. Dozens of papers are here summarized and presented, in order to describe the promising potential of the technique.

Soils of the Eastern mountainsides of the southern Sikhote-Alin (on the example of Lazovsky nature reserve, Russia)

NASA Astrophysics Data System (ADS)

Tregubova, Valentina; Semal, Victoria; Nesterova, Olga; Yaroslavtsev, Alexis

2017-04-01

The most common soils of the southern Far East are Brownzems under Russian classification (Cambisols), which are the zonal ones, emerging on the steep slopes and tops of hills, on high river terraces under broad-leaved and cedar-broad-leaved forests. Those soils formed due to two processes: organic matter metamorphism and clayization by siallite, leading to the formation of clay-metamorphic horizon Bw. The main morphological features of Cambisols are not deep soil profile (50 - 70 cm), weak horizons differentiation, with lots of cobble. Chemically those soils are low saturated, even in the humus horizon. Distribution of total absorbed bases is mostly accumulative, which is related to the distribution of humus in these soils, and the predominant type of clay fraction distribution of. The only exception are Humic Cambisols and Humic Cambisols Calcic which were formed on redeposited products of limestone rock weathering. Fine-grained deposits are mainly loams with a low content of silt. Silt distribution has an accumulative character with a gradual decrease in the content of silt down from the top of the profile. Layer of fresh leaf fall is very common for the Humic Cambisols surfaces, and under it there is the litter of plant residues with different degrees of decomposition. Accumulative humus horizon is dark gray with brownish tint, thin, from 10 to 15 cm in depth, loose, crumbly, highly penetrated by roots, with a strong granular structure, with aggregates tightly attached to the root hairs, sandy loam or sandy clay loam. The middle horizon is brown, yellowish-brown, divided into sub-horizons, with different color intensity, density, soil texture and amount of cobble. Dystric Cambisols are acidic or strongly acidic with low saturation of soil absorbing complex. Due to amount and distribution of organic matter these soils can be divided into two groups. The first group is soils with accumulative humus distribution: with a low depth humus-accumulative horizon (11 - 12 cm) and high content of organic matter (23 - 26 %); humus in the upper horizons mainly consists of humic acids, while in lower horizons it is with higher ratio of fulvic acids. The second group is soils with a gradual humus distribution along the profile and with a smaller amount of organic matter in the upper horizon (9 - 13 %) and with no differentiation in humus composition. Folic Cambisols are formed on the watershed surfaces, on the steep slopes under pine and oak trees. Under thin litter horizon these soils have organic-accumulative horizon of well decomposed organic matter, but in contrast with Dystric Cambisols it doesn't have strong granular structure. At the bottom the organic horizon is humic-impregnated or has clear streaks of humus. Humic Cambisols are formed in the lower parts of slopes, on steep slopes and high river terraces under pine and deciduous forests. All this soils have humified litter horizon, which is up to 7 cm in depth, weak differentiation of the soil profile, deep humus-accumulative horizon (18 - 31 cm) with dark gray, almost black color, with strong granular structure and loam or clay loam texture. Soil acidity is determined by the lithogenic basis. Base saturation is quite high (77 - 90%) in mineral horizons and is up to 70 % in organic and accumulative ones. There is a high amount of humus on the entire profile (5 - 16 %), which consists of humic acids in the upper half of the profile and of fulvates at the bottom. Humic Cambisols Gleyic are located in the lower parts of gentle slopes under mixed forest. Due to higher moisture at the lower parts of slopes this soils have signs of weak gley process in dense subsoil horizons in the form of small light grey spots. Humic Leptosols are weakly developed soils formed on rocky hills, boulders, rocky outcrops, under thick moss layer, under which is a layer of weathered gravel rock. Humic Cambisols (Calcic) are formed on the surface sediments of limestone. They have a deep soil profile, up to 40 cm and it's humus-accumulative horizon is dark gray or black, gradually passing into soil-forming rock. Bw horizon, typical for Cambisols, is weak.

Aggregate Stability and Erodibility of Purple Soil on Sloping Farmland as affected by different Soil Thickness

NASA Astrophysics Data System (ADS)

Huang, Xinjun; Zhang, Qingwen; Chen, Shanghong; Dong, Yuequn; Xiao, Meijia; Hamed, Lamy Mamdoh Mohamed

2017-04-01

Soil thickness is basic limiting condition for purple soil, not only due to its effect on crop production, but also its effect on soil structure. Steady-state of soil thickness will be achieved over time, as result the soil aggregate which the key factor of soil erodibility can be enhanced as well. However, the effect of soil thickness on aggregates stability and the characteristics of soil erodibility in sloping land have not yet fully understood.A field survey was conducted in hilly area of Sichuan region located in southeast China to study the relationship between soil aggregate stability and soil erodibility on sloping farmland under different four thickness (100cm, 80cm, 60cm, 30cm) of purple soil. Based on two different sieving methods (Dry and Wet sieving), we analyzed soil aggregate stability and its effect on soil erodibility within depth of 0-30cm soil layers. The results indicated that: Water stable aggregate on sloping farmland was ranged between 37.9% to 58.6%, where it increased with increasing the soil thickness. Moreover, fractal dimension calculated from dry-sieving and wet-sieving was 2.06-2.49 and 2.70-2.85 respectively, where it decreased with decreasing the soil thickness. The overall soil erodibility was 0.05-1.00 and a negative significant correlation was found between soil aggregate stability and erodibility(P<0.01). Moreover, farmland with thick soil profile tended to be high in soil erodibility within the top soil layer (0-30cm). The results reveal that soil thickness can affect soil aggregate stability as well as erodibility. As soil thickness increased, the top soil became more stable and less erodible. Keywords：purple soil; soil thickness; soil aggregate；soil erodibility

Impact of land management on soil structure and soil hydraulic properties

NASA Astrophysics Data System (ADS)

Kodesova, Radka; Jirku, Veronika; Nikodem, Antonin; Muhlhanselova, Marcela; Zigova, Anna

2010-05-01

Study is focused on a comparison of a soil structure and soil hydraulic properties within soil profiles of a same soil type under different land management. Study was performed in Haplic Luvisol in Hnevceves the Czech Republic. Two soil profiles, which were in close distance from each other, were chosen: 1. under the conventional tillage, 2. under the permanent (30 years) grass cover. Soil sampling and field experiments were carried out immediately after the harvest of winter barley in 2008. The micromorphological images were used to evaluate the soil structure of all Ap, Bt1, Bt2 and C diagnostic horizons. The hydraulic properties of the diagnostic horizons were studied in the laboratory using multistep outflow experiments performed on the undisturbed 100-cm3 soil samples. A tension disc infiltrometer (with a disc radius of 10 cm) and minidisc tension infiltrometers (with a disc radius of 2.2 cm) were used to measure cumulative water infiltration under unsaturated conditions created using a pressure head of -2 cm. Measurements were performed at a depths of 5, 45, 75 and 110 cm, which corresponded to the Ap, Bt1, Bt2 and C horizons of studied Haplic Luvisol at both locations. The Guelph permeameter was used to measure cumulative water flux under surface ponding conditions. The depth of the drilled well was 10, 50, 80 and 115 cm, the well radius was 3 cm, and the well ponding depth was 5 cm. Both tests were used to evaluate hydraulic conductivity (K for h=-2cm, and Ks) values. Results showed, that while properties in the Bt2 and C horizons of both soil profiles were relatively similar, properties in the Ap and Bt1 horizons were different. The fraction of gravitational pores (which may cause preferential flow) in the Ap and Bt1 horizons of the soil profile under the convectional tillage was large than those in the Ap and Bt1 horizons of the soil profile under the permanent grass. This influenced for instance the Ks values measured using the Guelph permeametr. The Ks values were higher and more variable in the soil profile under the convectional tillage than those in the soil profile under the permanent grass. On the other hand, due to the periodical tillage and consequent soil structure breakdown, the fraction of the large capillary pores were smaller in the Ap horizon of the soil profile under the convectional tillage than that in the Ap horizon of the soil profile under the permanent grass. As result the K (h=-2cm) values measured using the tension infiltrometer in the soil profile under the permanent grass was higher than those in the soil profile under the convectional tillage. However, the fraction of the large capillary pores and K (h=-2cm) values were similar in the Bt1 horizons of both soil profiles. Thus the land management impacted both macropores and matrix pores in the Ap horizon and macropores (prismatic structure and biopores) in the Bt1 horizon. Acknowledgement: Authors acknowledge the financial support of the Grant Agency of the Czech Republic (grant No. GA CR 526/08/0434) and the Ministry of Education, Youth and Sports of the Czech Republic (grant No. MSM 6046070901).

7 CFR 610.13 - Equations for predicting soil loss due to wind erosion.

Code of Federal Regulations, 2014 CFR

2014-01-01

... 7 Agriculture 6 2014-01-01 2014-01-01 false Equations for predicting soil loss due to wind erosion... RESOURCES CONSERVATION SERVICE, DEPARTMENT OF AGRICULTURE CONSERVATION OPERATIONS TECHNICAL ASSISTANCE Soil Erosion Prediction Equations § 610.13 Equations for predicting soil loss due to wind erosion. (a) The...

7 CFR 610.13 - Equations for predicting soil loss due to wind erosion.

Code of Federal Regulations, 2010 CFR

2010-01-01

... 7 Agriculture 6 2010-01-01 2010-01-01 false Equations for predicting soil loss due to wind erosion... RESOURCES CONSERVATION SERVICE, DEPARTMENT OF AGRICULTURE CONSERVATION OPERATIONS TECHNICAL ASSISTANCE Soil Erosion Prediction Equations § 610.13 Equations for predicting soil loss due to wind erosion. (a) The...

7 CFR 610.13 - Equations for predicting soil loss due to wind erosion.

Code of Federal Regulations, 2012 CFR

2012-01-01

... 7 Agriculture 6 2012-01-01 2012-01-01 false Equations for predicting soil loss due to wind erosion... RESOURCES CONSERVATION SERVICE, DEPARTMENT OF AGRICULTURE CONSERVATION OPERATIONS TECHNICAL ASSISTANCE Soil Erosion Prediction Equations § 610.13 Equations for predicting soil loss due to wind erosion. (a) The...

7 CFR 610.13 - Equations for predicting soil loss due to wind erosion.

Code of Federal Regulations, 2011 CFR

2011-01-01

... 7 Agriculture 6 2011-01-01 2011-01-01 false Equations for predicting soil loss due to wind erosion... RESOURCES CONSERVATION SERVICE, DEPARTMENT OF AGRICULTURE CONSERVATION OPERATIONS TECHNICAL ASSISTANCE Soil Erosion Prediction Equations § 610.13 Equations for predicting soil loss due to wind erosion. (a) The...

7 CFR 610.13 - Equations for predicting soil loss due to wind erosion.

Code of Federal Regulations, 2013 CFR

2013-01-01

... 7 Agriculture 6 2013-01-01 2013-01-01 false Equations for predicting soil loss due to wind erosion... RESOURCES CONSERVATION SERVICE, DEPARTMENT OF AGRICULTURE CONSERVATION OPERATIONS TECHNICAL ASSISTANCE Soil Erosion Prediction Equations § 610.13 Equations for predicting soil loss due to wind erosion. (a) The...

[A research review on "fertile islands" of soils under shrub canopy in arid and semi-arid regions].

PubMed

Chen, Guangsheng; Zeng, Dehui; Chen, Fusheng; Fan, Zhiping; Geng, Haiping

2003-12-01

Due to the inclemency of climate and soil conditions and the intense disturbance of human beings, the soil resources heterogeneity in arid and semi-arid grassland ecosystems worldwide was gradually increased during the last century. The interaction between soil heterogeneity and shrubs induced the autogenic development of "fertile islands" and the increasing spread of shrubs in the grassland ecosystems. The development of "fertile islands" around individual shrubs could change the vegetation composition and structure, as well as the distribution patterns of soil resources, and thus, reinforced the changes of the ecosystem function and structure from a relative stable grassland ecosystem to a quasi-stable shrubland ecosystem. The study of "fertile islands" phenomenon would help us to understand the causes, consequences and processes of desertification in arid and semi-arid areas. In this paper, the causes of "fertile islands", its study methods and significance and its relationship with shrub spreading as well as the responses of vegetation to it were summarized. The problems which might occur in the study of this phenomenon were also pointed out. Our aim was to offer some references to the study of land desertification processes and vegetation restoration in the arid and semi-arid regions.

Principles of landscape-geochemical studies in the zones contaminated by technogenical radionuclides for ecological and geochemical mapping

NASA Astrophysics Data System (ADS)

Korobova, Elena; Romanov, Sergey

2013-04-01

Efficiency of landscape-geochemical approach was proved to be helpful in spatial and temporal evaluation of the Chernobyl radionuclide distribution in the environment. The peculiarity of such approach is in hierarchical consideration of factors responsible for radionuclide redistribution and behavior in a system of inter-incorporated landscape-geochemical structures of the local and regional scales with due regard to the density of the initial fallout and patterns of radionuclide migration in soil-water-plant systems. The approach has been applied in the studies of distribution of Cs-137, Sr-90 and some other radionuclides in soils and vegetation cover and in evaluation of contribution of the stable iodine supply in soils to spatial variation of risk of thyroid cancer in areas subjected to radioiodine contamination after the Chernobyl accident. The main feature of the proposed approach is simultaneous consideration of two types of spatial heterogeneities: firstly, the inhomogeneity of external radiation exposure due to a complex structure of the contamination field, and, secondly, the landscape geochemical heterogeneity of the affected area, so that the resultant effect of radionuclide impact could significantly vary in space. The main idea of risk assessment in this respect was to reproduce as accurately as possible the result of interference of two surfaces in the form of risk map. The approach, although it demands to overcome a number of methodological difficulties, allows to solve the problems associated with spatially adequate protection of the affected population and optimization of the use of contaminated areas. In general it can serve the basis for development of the idea of the two-level structure of modern radiobiogeochemical provinces formed by superposition of the natural geochemical structures and the fields of technogenic contamination accompanied by the corresponding peculiar and integral biological reactions.

Soil cover patterns and SOC dynamics impacts on the soil processes, land management and ecosystem services in Central Region of Russia

NASA Astrophysics Data System (ADS)

Vasenev, Ivan; Chernikov, Vladimir; Yashin, Ivan; Geraskin, Mikhail; Morev, Dmitriy

2014-05-01

In the Central Region of Russia (CRR) the soil cover patterns usually play the very important role in the soil forming and degradation processes (SFP & SDP) potential and current rates, soil organic carbon (SOC) dynamics and pools, greenhouse gases (GHG) emissions and soluble SOC fluxes that we need take into attention for better assessment of the natural and especially man-changed ecosystems' services and for best land-use practices development. Central Region of Russia is the biggest one in RF according to its population and role in the economy. CRR is characterized by high spatial variability of soil cover due to as original landscape heterogeneity as complicated history of land-use practices during last 700 years. Our long-term researches include the wide zonal-provincial set of representative ecosystems and soil cover patterns with different types and history of land-use (forest, meadow-steppe and agricultural ones) from middle-taiga to steppe zones with different level of continentality. The carried out more than 30-years region- and local-scale researches of representative natural and rural landscapes in Tver', Yaroslavl', Kaluga, Moscow, Vladimir, Saransk (Mordovia), Kursk, Orel, Tambov, Voronezh and Saratov oblasts give us the interregional multi-factorial matrix of elementary soil cover patterns (ESCP) with different soil forming and degradation processes rates and soil organic carbon dynamics due to regionally specific soil-geomorphologic features, environmental and dominated microclimate conditions, land-use current practices and history. The validation and ranging of the limiting factors of SFP and SDP develop¬ment, soil carbon dynamics and sequestration potential, ecosystem (agroecosystem) principal services, land functional qualities and agroecological state have been done for dominating and most dynamical components of ESCP regional-typological forms - with application of SOC structure analysis, regional and local GIS, soil spatial patterns detail mapping, traditional regression kriging, correlation tree models and DSS adapted to concrete region and agrolandscape conditions. The outcomes of statistical process modeling show the essential amplification of erosion, dehumification, CO2, CH4 and N2O emission, soluble SOC fluxes, acidification or alkalization, disaggregation and overcompaction processes due to violation of environmentally sound land-use systems and traditional balances of organic matter, nutrients, Ca and Na in agrolandscapes. Due to long-term intensive and out-of-balance land-use practices the most zonal soils and soil cover pattern essentially lost not only their unique natural features (humus horizons depth till 1 m and more in case of Chernozems, 2-6 % of SOC and favorable agrophysical features), but ecosystem services and ecological functions including terrestrial ecosystem carbon balance and the GHG fluxes control. Key-site monitoring results and regional generalized data showed 1-1.5% SOC lost during last 50 years period and active processes of CO2 emission and humus profile eluvial-illuvial redistribution too. A drop of Corg content below threshold "humus limiting content" values (for different soils they vary from 1 to 3-4% of SOC) considerably reduces effectiveness of used fertilizers and possibility of sustai¬nable agronomy here. Forest-steppe Chernozems are usually characterized by higher stability than steppe ones. The ratio between erosive and biological losses in humus supplies can be ten-tatively estimated as fifty-fifty with strong spatial variability due to slope and land-use parameters. These processes have essentially different sets of environmental consequences and ecosystem services that we need to understand in frame of environmental and agroecological problems development prediction.

Influence of linear alkylbenzene sulfonate (LAS) on the structure of Alphaproteobacteria, Actinobacteria, and Acidobacteria communities in a soil microcosm.

PubMed

Sánchez-Peinado, M del Mar; González-López, Jesús; Martínez-Toledo, M Victoria; Pozo, Clementina; Rodelas, Belén

2010-03-01

Linear alkylbenzene sulfonate (LAS) is the most used anionic surfactant in a worldwide scale and is considered a high-priority pollutant. LAS is regarded as a readily biodegradable product under aerobic conditions in aqueous media and is mostly removed in wastewater treatment plants, but an important fraction (20-25%) is immobilized in sewage sludge and persists under anoxic conditions. Due to the application of the sludge as a fertilizer, LAS reaches agricultural soil, and therefore, microbial toxicity tests have been widely used to evaluate the influence of LAS on soil microbial ecology. However, molecular-based community-level analyses have been seldom applied in studies regarding the effects of LAS on natural or engineered systems, and, to our knowledge, there are no reports of their use for such appraisals in agricultural soil. In this study, a microcosm system is used to evaluate the effects of a commercial mixture of LAS on the community structure of Alphaproteobacteria, Actinobacteria, and Acidobacteria in an agricultural soil. The microcosms consisted of agricultural soil columns (800 g) fed with sterile water (8 ml h(-1)) added of different concentration of LAS (10 or 50 mg l(-1)) for periods of time up to 21 days. Sterile water was added to control columns for comparison. The structures of Alphaproteobacteria, Actinobacteria, and Acidobacteria communities were analyzed by a cultivation independent method (temperature gradient gel electrophoresis (TGGE) separation of polymerase chain reaction (PCR)-amplified partial 16S rRNA genes). Relevant populations were identified by subsequent reamplification, DNA sequencing, and database comparisons. Cluster analysis of the TGGE fingerprints taking into consideration both the number of bands and their relative intensities revealed that the structure of the Alphaproteobacteria community was significantly changed in the presence of LAS, at both concentrations tested. The average number of bands was significantly lower in the microcosms receiving 50 mg l(-1) LAS and in the lower portion of soil cores. The clear differentiation of the samples of the upper portion of the soil columns amended with LAS was specifically related to the presence and intensity of a distinctive major band (named band class 7). There was a statistically significant positive correlation between the concentrations of LAS detected in soil portions taken from LAS 10 mg l(-1) and LAS 50 mg l(-1) microcosms and the relative intensity of band class 7 in the corresponding TGGE profiles. Prevalent Alphaproteobacteria populations in the soil microcosms had close similarity (>99%) to cultivated species affiliated to genera of the Rhizobiaceae, Methylocystaceae, Hyphomicrobiaceae, Rhodospirillaceae, Brucellaceae, Bradyrhizobiaceae, and Caulobacteraceae families. The population represented by band class 7 was found closely related to the genus Phenylobacterium (Caulobacteraceae). According to cluster analysis of TGGE profiles, the structure of both Actinobacteria and Acidobacteria communities in the soil microcosms was remarkably stable in the presence of LAS at the two concentrations tested, as most bands were universally present in all samples and displayed fairly similar relative intensities. Previous studies by others authors, based on biological and chemical tests, concluded that LAS toxicity was not an important microbial selection factor in sludge amended soil, while work based on the use of molecular fingerprinting to evaluate the impact of LAS in aqueous media and marine sediments showed that concentrations as low as 1 mg l(-1) significantly influence the development of the bacterial community structure. Although TGGE is not a strictly quantitative method due to the bias introduced by the PCR reaction, changes of band intensity through experiments are a consequence of a change in the relative abundance of the corresponding populations in the community and can be used as a semiquantitative measure of bacterial diversity. Our results evidence that the Phenylobacterium population represented by band class 7 was favored by the presence of increasing concentrations of LAS in the soil and turned into a dominant population, suggesting its possible ability to use LAS in soil as a source of nutrients. As studies with pure cultures are required to confirm the ability of this population to degrade LAS, isolation strategies are currently under development in our laboratory. The weak effect of LAS on the structure of Actinobacteria and Acidobacteria communities is particularly interesting, as to our knowledge, there are no previous reports regarding the effects of LAS on these bacterial groups in soil. CONCLUSIONS, RECOMMENDATIONS, AND PERSPECTIVES: The Phenylobacterium-related alphaproteobacterial population identified in this work was selectively enriched in LAS polluted soil and is a plausible candidate to play a relevant role in the biotransformation of the surfactant under the conditions tested. The surfactant had no remarkable effects on the Actinobacteria and Acidobacteria fingerprints in soil, even when present at concentrations widely exceeding those reached in soil immediately after sludge application. TGGE fingerprinting provides a reliable and low time-consuming method for the monitoring of the bacterial community structure and dynamics, and we recommend its integration with the biological and chemical analyses usually applied in risk assessment of LAS in the environment.

Multi-scale variation in spatial heterogeneity for microbial community structure in an eastern Virginia agricultural field

NASA Technical Reports Server (NTRS)

Franklin, Rima B.; Mills, Aaron L.

2003-01-01

To better understand the distribution of soil microbial communities at multiple spatial scales, a survey was conducted to examine the spatial organization of community structure in a wheat field in eastern Virginia (USA). Nearly 200 soil samples were collected at a variety of separation distances ranging from 2.5 cm to 11 m. Whole-community DNA was extracted from each sample, and community structure was compared using amplified fragment length polymorphism (AFLP) DNA fingerprinting. Relative similarity was calculated between each pair of samples and compared using geostatistical variogram analysis to study autocorrelation as a function of separation distance. Spatial autocorrelation was found at scales ranging from 30 cm to more than 6 m, depending on the sampling extent considered. In some locations, up to four different correlation length scales were detected. The presence of nested scales of variability suggests that the environmental factors regulating the development of the communities in this soil may operate at different scales. Kriging was used to generate maps of the spatial organization of communities across the plot, and the results demonstrated that bacterial distributions can be highly structured, even within a habitat that appears relatively homogeneous at the plot and field scale. Different subsets of the microbial community were distributed differently across the plot, and this is thought to be due to the variable response of individual populations to spatial heterogeneity associated with soil properties. c2003 Federation of European Microbiological Societies. Published by Elsevier Science B.V. All rights reserved.

Frequency- and Time-Domain Methods in Soil-Structure Interaction Analysis

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bolisetti, Chandrakanth; Whittaker, Andrew S.; Coleman, Justin L.

2015-06-01

Soil-structure interaction (SSI) analysis in the nuclear industry is currently performed using linear codes that function in the frequency domain. There is a consensus that these frequency-domain codes give reasonably accurate results for low-intensity ground motions that result in almost linear response. For higher intensity ground motions, which may result in nonlinear response in the soil, structure or at the vicinity of the foundation, the adequacy of frequency-domain codes is unproven. Nonlinear analysis, which is only possible in the time domain, is theoretically more appropriate in such cases. These methods are available but are rarely used due to the largemore » computational requirements and a lack of experience with analysts and regulators. This paper presents an assessment of the linear frequency-domain code, SASSI, which is widely used in the nuclear industry, and the time-domain commercial finite-element code, LS-DYNA, for SSI analysis. The assessment involves benchmarking the SSI analysis procedure in LS-DYNA against SASSI for linearly elastic models. After affirming that SASSI and LS-DYNA result in almost identical responses for these models, they are used to perform nonlinear SSI analyses of two structures founded on soft soil. An examination of the results shows that, in spite of using identical material properties, the predictions of frequency- and time-domain codes are significantly different in the presence of nonlinear behavior such as gapping and sliding of the foundation.« less

The repeated drying-wetting and freezing-thawing cycles affect only the active pool of soil organic matter

NASA Astrophysics Data System (ADS)

Semenov, Vyacheslav; Zinyakova, Natalya; Tulina, Anastasiya

2016-04-01

The decrease in the content of soil organic carbon, particularly in active form, is one of the major problems of the 21st century, which is closely related to the disturbance of the biogeochemical carbon cycle and to the increase in the emission of carbon dioxide into the atmosphere. The main reasons for the SOM losses are the surplus of the SOM active pool losses due to mineralization, erosion, and infiltration over the input of fresh organic matter to the soil, as well as the changes in the soil conditions and processes due to natural and anthropogenic disturbing impacts. Experiments were carried out with mixed samples from the upper layers of soddy-podzolic soil, gray forest soil, and typical chernozems. Soil samples as controls were incubated after wetting for 150 days. The dynamics and cumulative production of C-CO2 under stable temperature (22°C) and moisture conditions were determined; the initial content of potentially mineralizable organic matter (C0) in the soil at the beginning of the incubation was then calculated to use these data as the control. Other soil samples were exposed in flasks to the following successive treatments: wetting →incubation → freezing → thawing → incubation →drying. Six repeated cycles of disturbing impacts were performed for 140 days of the experiment. After six cycles, the soil samples were incubated under stable temperature and moisture conditions for 150 days. The wetting of dried soils and the thawing of frozen soils are accompanied by the pulsed dynamics of the C-CO2 production with an abrupt increase in the rate of the C-CO2 emission within several days by 2.7-12.4 and 1.6-2.7 times, respectively, compared to the stable incubation conditions. The rate of the C-CO2 production pulses under each subsequent impact decreased compared to the preceding one similarly for all studied soils, which could be due to the depletion in potentially mineralizable soil organic matter (C0). The cumulative extra C-CO2 production by soils of the natural lands during six cycles of disturbing impacts composed 21-40% of that by soils incubated under stable conditions; the corresponding values for the cultivated soils, including soil under the continuous bare fallow, were in the range of 45-82%. The structure of the active organic matter pool in uncultivated soils after six incubation cycles became similar to those for soils under the continuous bare fallow, as well as under farming agrocenoses. Following from the obtained results that the organic matter mobilized by disturbing impacts was predominantly mineralized in arable soils with an initially low C0 content, while a part of the mobilized organic matter was stabilized in untreated soils with the high initial C0 content. This work was supported by RSF. Project number 14-14-00625

ESEM results and changes in wettability patterns within soil: three years irrigation with slightly-salted water

NASA Astrophysics Data System (ADS)

Valdes-Abellan, Javier; Candela, Lucila; Medero, Gabriela; Buckman, Jim; Hasnayn, Mohammad M.

2015-04-01

Impacts on soil and aquifer media from the use of non-conventional water (treated wastewater-TWW, desalted) for irrigation have been widely studied in the last years . A number of contributions have focused on the impacts derived from the use of TWW (Assouline and Narkis, 2013; Lahav et al., 2010; Xu et al., 2010). Changes in soil hydraulic conductivity and clogging processes have been studied in laboratory experiments from soil columns (Lado and Ben-Hur, 2010) and at field scale (Costa, 1999; Minhas et al., 1994). Irrigation with non-conventional water may also lead to the occurrence of contaminants, a major current environmental concern (Valdes-Abellan et al., 2013). Previous studies have considered impacts in a uniform soil media pore structure; less attention has been paid at a microscopic scale and the influence that high-salinity water may have on wettability of soil. Environmental scanning electron microscopy (ESEM) is a useful technique to be applied in soil science to analyse microscopic changes in soil structure or soil wetting patterns. Research applying this technology for wet systems (Donald, 1998) or porous media (Ali et al., 1995) is available, however as far as we know research on soil impacts due to long term irrigation with saline or non-conventional water are much less common. The dynamic mode of the ESEM allows changes of samples from wet to dry by modifying the water vapour pressure and to observe the wetting and drying patterns and interactions between the solid and liquid phase in the soil (Lourenço et al., 2008). Preliminary results of the study at a microscopic scale of soil samples collected before and after three year irrigation with slightly salted water in an experimental plot setup in semi-arid climatic conditions (Alicante, SE Spain) are presented. We will show the micro-structure of soil and undertake a preliminary investigation of wetting and drying of samples using ESEM techniques Differences in the water vapour pressure value at which complete saturation is achieved was detected, being lower in the 3-years irrigated samples compared with the initial ones. Besides, velocity in which saturation took place was different: initial samples saturation process were developed very quickly, as triggered by a critical shift in the water vapour pressure value and much gradual process were develop in the 3-years irrigated sample when saturation started earlier.

Soil microbial biomass, activity and community composition along altitudinal gradients in the High Arctic (Billefjorden, Svalbard)

NASA Astrophysics Data System (ADS)

Kotas, Petr; Šantrůčková, Hana; Elster, Josef; Kaštovská, Eva

2018-03-01

The unique and fragile High Arctic ecosystems are vulnerable to global climate warming. The elucidation of factors driving microbial distribution and activity in arctic soils is essential for a comprehensive understanding of ecosystem functioning and its response to environmental change. The goals of this study were to investigate microbial biomass and activity, microbial community structure (MCS), and their environmental controls in soils along three elevational transects in the coastal mountains of Billefjorden, central Svalbard. Soils from four different altitudes (25, 275, 525 and 765 m above sea level) were analyzed for a suite of characteristics including temperature regimes, organic matter content, base cation availability, moisture, pH, potential respiration, and microbial biomass and community structure using phospholipid fatty acids (PLFAs). We observed significant spatial heterogeneity of edaphic properties among transects, resulting in transect-specific effects of altitude on most soil parameters. We did not observe any clear elevation pattern in microbial biomass, and microbial activity revealed contrasting elevational patterns between transects. We found relatively large horizontal variability in MCS (i.e., between sites of corresponding elevation in different transects), mainly due to differences in the composition of bacterial PLFAs, but also a systematic altitudinal shift in MCS related to different habitat preferences of fungi and bacteria, which resulted in high fungi-to-bacteria ratios at the most elevated sites. The biological soil crusts on these most elevated, unvegetated sites can host microbial assemblages of a size and activity comparable to those of the arctic tundra ecosystem. The key environmental factors determining horizontal and vertical changes in soil microbial properties were soil pH, organic carbon content, soil moisture and Mg2+ availability.

Quantification of the inevitable: the influence of soil macrofauna on soil water movement in rehabilitated open-cut mined lands

NASA Astrophysics Data System (ADS)

Arnold, S.; Williams, E. R.

2016-01-01

Recolonisation of soil by macrofauna (especially ants, termites and earthworms) in rehabilitated open-cut mine sites is inevitable and, in terms of habitat restoration and function, typically of great value. In these highly disturbed landscapes, soil invertebrates play a major role in soil development (macropore configuration, nutrient cycling, bioturbation, etc.) and can influence hydrological processes such as infiltration, seepage, runoff generation and soil erosion. Understanding and quantifying these ecosystem processes is important in rehabilitation design, establishment and subsequent management to ensure progress to the desired end goal, especially in waste cover systems designed to prevent water reaching and transporting underlying hazardous waste materials. However, the soil macrofauna is typically overlooked during hydrological modelling, possibly due to uncertainties on the extent of their influence, which can lead to failure of waste cover systems or rehabilitation activities. We propose that scientific experiments under controlled conditions and field trials on post-mining lands are required to quantify (i) macrofauna-soil structure interactions, (ii) functional dynamics of macrofauna taxa, and (iii) their effects on macrofauna and soil development over time. Such knowledge would provide crucial information for soil water models, which would increase confidence in mine waste cover design recommendations and eventually lead to higher likelihood of rehabilitation success of open-cut mining land.

Use of Microtremor Array Recordings for Mapping Subsurface Soil Structure, Singapore

NASA Astrophysics Data System (ADS)

Walling, M.

2012-12-01

Microtremor array recordings are carried out in Singapore, for different geology, to study the influence of each site in modeling the subsurface structure. The Spatial Autocorrelation (SPAC) method is utilized for the computation of the soil profiles. The array configuration of the recording consists of 7 seismometers, recording the vertical component of the ground motion, and the recording at each site is carried out for 30 minutes. The results from the analysis show that the soil structure modeled for the young alluvial of Kallang Formation (KF), in terms of shear wave velocity (Vs), gives a good correlation with borehole information, while for the older geological formation of Jurong Formation (JF) (sedimentary rock sequence) and Old Alluvial (OA) (dense alluvium formation), the correlation is not very clear due to the lack of impedance contrast. The older formation of Bukit Timah Granite (BTG) show contrasting results within the formation, with the northern BTG suggesting a low Vs upper layer of about 20m - 30m while the southern BTG reveals a dense formation. The discrepancy in the variation within BTG is confirmed from borehole data that reveals the northern BTG to have undergone intense weathering while the southern BTG have not undergone noticeable weathering. Few sites with bad recording quality could not resolve the soil structure. Microtremor array recording is good for mapping sites with soft soil formation and weathered rock formation but can be limited in the absence of subsurface velocity contrast and bad quality of microtremor records.; The correlation between the Vs30 estimated from SPAC method and borehole data for the four major geological formations of Singapore. The encircled sites are the sites with recording error.

An increase in precipitation exacerbates negative effects of nitrogen deposition on soil cations and soil microbial communities in a temperate forest.

PubMed

Shi, Leilei; Zhang, Hongzhi; Liu, Tao; Mao, Peng; Zhang, Weixin; Shao, Yuanhu; Fu, Shenglei

2018-04-01

World soils are subjected to a number of anthropogenic global change factors. Although many previous studies contributed to understand how single global change factors affect soil properties, there have been few studies aimed at understanding how two naturally co-occurring global change drivers, nitrogen (N) deposition and increased precipitation, affect critical soil properties. In addition, most atmospheric N deposition and precipitation increase studies have been simulated by directly adding N solution or water to the forest floor, and thus largely neglect some key canopy processes in natural conditions. These previous studies, therefore, may not realistically simulate natural atmospheric N deposition and precipitation increase in forest ecosystems. In a field experiment, we used novel canopy applications to investigate the effects of N deposition, increased precipitation, and their combination on soil chemical properties and the microbial community in a temperate deciduous forest. We found that both soil chemistry and microorganisms were sensitive to these global change factors, especially when they were simultaneously applied. These effects were evident within 2 years of treatment initiation. Canopy N deposition immediately accelerated soil acidification, base cation depletion, and toxic metal accumulation. Although increased precipitation only promoted base cation leaching, this exacerbated the effects of N deposition. Increased precipitation decreased soil fungal biomass, possible due to wetting/re-drying stress or to the depletion of Na. When N deposition and increased precipitation occurred together, soil gram-negative bacteria decreased significantly, and the community structure of soil bacteria was altered. The reduction of gram-negative bacterial biomass was closely linked to the accumulation of the toxic metals Al and Fe. These results suggested that short-term responses in soil cations following N deposition and increased precipitation could change microbial biomass and community structure. Copyright © 2017 Elsevier Ltd. All rights reserved.

Multivariate soil fertility relationships for predicting the environmental persistence of 2,4,6-trinitrotoluene (TNT) and 1,3,5-trinitro-1,3,5-tricyclohexane (RDX) among taxonomically distinct soils.

PubMed

Katseanes, Chelsea K; Chappell, Mark A; Hopkins, Bryan G; Durham, Brian D; Price, Cynthia L; Porter, Beth E; Miller, Lesley F

2017-12-01

After nearly a century of use in numerous munition platforms, TNT and RDX contamination has turned up largely in the environment due to ammunition manufacturing or as part of releases from low-order detonations during training activities. Although the basic knowledge governing the environmental fate of TNT and RDX are known, accurate predictions of TNT and RDX persistence in soil remain elusive, particularly given the universal heterogeneity of pedomorphic soil types. In this work, we proposed overcoming this problem by considering the environmental persistence of these munition constituents (MC) as multivariate mathematical functions over a variety of taxonomically distinct soil types, instead of a single constant or parameter of a specific absolute value. To test this idea, we conducted experiments where the disappearance kinetics of TNT and RDX were measured over a >300 h period in taxonomically distinct soils. Classical fertility-based soil measurements were log-transformed, statistically decomposed, and correlated to TNT and RDX disappearance rates (k -TNT and k -RDX ) using multivariate dimension-reduction and correlation techniques. From these efforts, we generated multivariate linear functions for k parameters across different soil types based on a statistically reduced set of their chemical and physical properties: Calculations showed that the soil properties exhibited strong covariance, with a prominent latent structure emerging as the basis for relative comparisons of the samples in reduced space. Loadings describing TNT degradation were largely driven by properties associated with alkaline/calcareous soil characteristics, while the degradation of RDX was attributed to the soil organic matter content - reflective of an important soil fertility characteristic. In spite of the differing responses to the munitions, batch data suggested that the overall nutrient dynamics were consistent for each soil type, as well as readily distinguishable from the other soil types used in this study. Thus, we hypothesized that the latent structure arising from the strong covariance of full multivariate geochemical matrix describing taxonomically distinguished "soil types" may provide the means for potentially predicting complex phenomena in soils. Published by Elsevier Ltd.

OpenSees

Science.gov Websites

, through soil-structure interaction, to structural response. New computer simulation tools are necessary to of structures and soils to investigate challenging problems in soil-structure-foundation interaction including foundations and soils is used to study the effects of soil liquefaction and permanent

Impact of drainage on wettability of fen peat-moorsh soils

NASA Astrophysics Data System (ADS)

Szajdak, L.; Szatyłowicz, J.; Brandyk, T.

2009-04-01

High water retention in peat is attributed to structural voids (macro-pores) due to the partial degradation of the structure of peat-forming plants, and molecular absorption sites (micro-pores) associated with the formation of humic substances. Water retention by the heterogeneously-structured system in peat organic matter depends on the chemical structure of solid surfaces. These naturally wet solids, if dried sufficiently, lose the ability to rewet quickly when immersed in water. The ability of peat surfaces to attract and hold water is attributed to hydrophilic functional groups which characterize the organic substances of peat. The investigations of chemical and physical properties were performed for three different peat-moorsh soils located in the Biebrza River Valley in Poland. All examined soils were used as meadow. Soil samples were taken from two depths: 5-10 cm (moorsh) and 50-80 cm (peat). Total organic carbon (TOC), dissolved organic carbon (DOC) and humic acids (HA) extracted from these samples were analysed. Also basic physical properties such as ash content and bulk density were measured. Wetting behavior of soils was quantified using water drop penetration time test (WDPT) and measured values of the soil-water contact angle using sessile drop method. The measurements were conducted on air-dry soil samples which volumetric moisture content was not exceeding 7%. The significant differences in the concentrations of TOC, DOC and properties of HA between two investigated depth of among peat and moorsh samples were observed. The measured concentrations of total organic carbon in the considered soils ranged from 37.2 to 45.6%. Generally, the decrease of total organic carbon concentration with depth of profiles was observed. The contents of dissolved organic carbon in the soils ranged from 5.3 to 19.4%. The quantities of dissolved organic carbon decreased simultaneously with E4/E6 values and with the depth of the soil profiles. For the investigated peat's, an increase of the depth is accompanied by the decrease in the degree of humification or an increase in chemical maturity of HA. The measured values of the contact angle for investigated soils were in the range from 81.4˚ to 114.3˚ what indicates their high water repellency. The WDPT was positively correlated with total organic carbon, organic matter and humic acids content while ash content, soil bulk density, pH and absorbance were correlated negatively. The highest value of correlation coefficient (statistically significant) was obtained for relation between WDPT and ash content. The soil water contact angle was less correlated with peat-moorsh soil properties in comparison with WDPT with one exception pH. The pH against the contact angle indicates tendency of increasing the contact angle with decreasing pH.

Survival of introduced phosphate-solubilizing bacteria (PSB) and their impact on microbial community structure during the phytoextraction of Cd-contaminated soil.

PubMed

Jeong, Seulki; Moon, Hee Sun; Shin, Doyun; Nam, Kyoungphile

2013-12-15

This study was conducted to investigate whether or not phosphate-solubilizing bacteria (PSB) as a kind of plant growth promoting rhizobacteria enhance the uptake of Cd by plants. In addition, the effect of PSB augmentation during phytoextraction on the microbial community of indigenous soil bacteria was also studied. In the initial Cd-contaminated soil, the major phyla were Proteobacteria (35%), Actinobacteria (38%) and Firmicutes (8%). While Proteobacteria were dominant at the second and sixth week (41 and 54%, respectively) in inoculated soil, Firmicutes (mainly belonging to the Bacilli class-61%), dramatically increased in the eight-week soil. For the uninoculated soil, the proportion of α-Proteobacteria increased after eight weeks (32%). Interestingly, Actinobacteria class, which was originally present in the soil (37%), seemed to disappear during phytoremediation, irrespective of whether PSB was inoculated or not. Cluster analysis and Principal Component Analysis revealed that the microbial community of eight-week inoculated soil was completely separated from the other soil samples, due to the dramatic increase of Bacillus aryabhattai. These findings revealed that it took at least eight weeks for the inoculated Bacillus sp. to functionally adapt to the introduced soil, against competition with indigenous microorganisms in soil. An ecological understanding of interaction among augmented bacteria, plant and indigenous soil bacteria is needed, for proper management of phytoextraction. Copyright © 2013 Elsevier B.V. All rights reserved.

Linking Carbon Flux Dynamics and Soil Structure in Dryland Soils

NASA Astrophysics Data System (ADS)

DeCarlo, K. F.; Caylor, K. K.

2016-12-01

Biological sources in the form of microbes and plants play a fundamental role in determining the magnitude of carbon flux. However, the geophysical structure of the soil (which the carbon must pass through before entering the atmosphere) often serves as a constraining entity, which has the potential to serve as instigators or mitigators of those carbon and hydrologic flux processes. We characterized soil carbon dynamics in three dryland soil systems: bioturbated soils, biocompacted soils, and undisturbed soils. Carbon fluxes were characterized using a closed-system respiration chamber, with CO2 concentration differences measured using an infrared gas analyzer (IRGA). Structure of the soil systems, with a focus on the macro-crack structure, were characterized using a combined resin-casting/X-ray imaging technique. Results show fundamental differences in carbon dynamics between the different soil systems/structures: control soils have gaussian distributions of carbon flux that decrease with progressive drying of the soil, while biocompacted soils exhibit exponentially distributed fluxes that do not regularly decrease with increased drying of the soil. Bioturbated soils also exhibit an exponential distribution of carbon flux, though at a much higher magnitude. These differences are evaluated in the context of the underlying soil structure: while the control soils exhibit a shallow and narrow crack structure, the biocompacted soils exhibit a "systematic" crack network with moderate cracking intensity and large depth. The deep crack networks of the biocompacted soils may serve to physically enhance an otherwise weak source of carbon via advection and/or convection, inducing fluxes that are equal or greater than an otherwise carbon-rich soil. The bioturbated soils exhibit a "surficial" crack network that is shallow but extensive, but additionally have deep holes known to convectively vent carbon, which may explain their periodically large carbon fluxes. Our results suggest that variability in soil structure, as well as carbon source, plays a fundamental role in carbon flux dynamics, and the importance of evaluating biological carbon source and geophysical soil structure in a dryland environment.

Initial substrate characteristics and soil solution composition in the artificial catchment ´ Chicken Creeḱ

NASA Astrophysics Data System (ADS)

Schaaf, Wolfgang

2010-05-01

To combine process-oriented research on initial development of ecosystems with interactions and co-development of spatial patterns and structures the Transregional Collaborative Research Centre (SFB/TRR) 38 (www.tu-cottbus.de/sfb_trr) was established as an initiative of three universities (BTU Cottbus, TU Munich and ETH Zurich). The objective of the SFB/TRR 38 is to enhance our understanding of structure genesis in ecosystems and of process dynamics as well as their interactions during the initial development phase. The artificial catchment was constructed in the mining area of Lusatia/Germany as the main research site (Gerwin et al. 2009). With an area of about 6 ha, this catchment ´Chicken Creeḱ is to our knowledge the largest artificial catchment worldwide. It was constructed as a 2-4 m layer of post-glacial sandy to loamy sediments overlying a 1-2 m layer of Tertiary clay that forms a shallow pan and seals the whole catchment at the base. No further measures of restoration like planting, amelioration or fertilization were carried out to allow natural succession and undisturbed development. Initial soil conditions were characterized by intensive grid sampling throughout the catchment. There is textural difference between the western and the eastern part of the catchment due to the fact that the substrates were dumped in two different periods during the construction process. In the NE part of the catchment pure sands dominate whereas the SW part has more loamy sands. Due to the carbonate content the pH values are weakly alkaline or neutral. The low contents in organic carbon, pedogenic oxides and clay mineralogy underline the initial state of the soil. Soil solution is sampled at four soil pits that were excavated down to the saturated layer in 2-2.5 m depth by hand and stabilized with a lining of PE rings with a diameter of 1m. From these pits boron silicate glass suction plates were installed into the soil in 2-3 depths. Soil solution is collected using a permanent pressure head of -10 kPa and sampled biweekly. Soil solution composition varies considerably between the four soil pits during the observation period. Compared to these spatial variations, differences in soil depth and over time are less pronounced. Main components of all sampled soil solutions are Ca2+, Mg2+, HCO3- and SO42-. Due to the carbonate content of the substrates, mean pH values vary between 7.0 and 8.0 in all samples. No correlations were found between soil solution compositions and soil parameters of the surrounding grid samples. Compared to the low organic carbon and total sulfur contents of the parent material, the concentrations of sulfate and DOC are surprisingly high. During summer drought periods pale whitish precipitations were frequently observed at the vertical walls of erosions gullies. Microscopy revealed that these precipitations form a very thin crust composed of very small crystal grains. Further analysis using SEM and EDX mapping showed that the particles are composed of Ca and S indicating gypsum or anhydrite. Similar findings in Chernozems of Central Germany. were interpreted as gypsum formation due to former high sulphur deposition together with low precipitation and leaching (Dultz and Kühn 2005). References Dultz, S. and Kühn, P., 2005: Occurrence, formation, and micromorphology of gypsum in soils from the Central-German Chernozem region. Geoderma 129, 230-250. Gerwin, W., Schaaf, W., Biemelt, D., Fischer, A., Winter, S., Hüttl, R.F., 2009: The artificial catchment "Chicken Creek" (Lusatia, Germany) - a landscape laboratory for interdisciplinary studies of initial ecosystem development. Ecolological Engineering 35, 1786-1796.

Role of biochar on composting of organic wastes and remediation of contaminated soils-a review.

PubMed

Wu, Shaohua; He, Huijun; Inthapanya, Xayanto; Yang, Chunping; Lu, Li; Zeng, Guangming; Han, Zhenfeng

2017-07-01

Biochar is produced by pyrolysis of biomass residues under limited oxygen conditions. In recent years, biochar as an amendment has received increasing attention on composting and soil remediation, due to its unique properties such as chemical recalcitrance, high porosity and sorption capacity, and large surface area. This paper provides an overview on the impact of biochar on the chemical characteristics (greenhouse gas emissions, nitrogen loss, decomposition and humification of organic matter) and microbial community structure during composting of organic wastes. This review also discusses the use of biochar for remediation of soils contaminated with organic pollutants and heavy metals as well as related mechanisms. Besides its aging, the effects of biochar on the environment fate and efficacy of pesticides deserve special attention. Moreover, the combined application of biochar and compost affects synergistically on soil remediation and plant growth. Future research needs are identified to ensure a wide application of biochar in composting and soil remediation. Graphical abstract ᅟ.

Communities of microorganisms and invertebrates in soil-like bodies of soccer fields in Moscow oblast

NASA Astrophysics Data System (ADS)

Kutovaya, O. V.; Zamotaev, I. V.; Belobrov, V. P.

2014-11-01

Artificially created soil-like technogenic formations (STFs) of soccer fields are developed under combined action of intense technogenic and natural factors and processes, which cannot but affect the structure and biological activity of their microbial communities and mesofauna. The microflora of the STFs is very similar to the microflora of the background soddy-podzolic soils of Moscow oblast with respect to the composition of the physiological groups of microorganisms. However, they are drastically different in their quantitative characteristics. The numbers of all the trophic groups of microorganisms, except for the microscopic fungi, in the STFs are much higher than those in the zonal soils. An increased biological activity of the STFs is due to regular watering, heating, application of sand and mineral fertilizers, and technogenic turbation processes. The mesofauna of the STFs is represented by several ecological groups of earthworms, including soildwelling (endogeic) earthworms ( Aporrectodea caliginosa), epigeic earthworms dwelling at the soil-litter interface ( Lumbricus rubellus), and litter-dwelling earthworms ( Eisenia foetida).

Changes in Soil Bacterial Communities and Diversity in ...

EPA Pesticide Factsheets

Silver-induced selective pressure is becoming increasingly important due to the growing use of silver (Ag) as an antimicrobial agent in biomedical and commercial products. With demonstrated links between environmental resistomes and clinical pathogens, it is important to identify microbial profiles related to silver tolerance/resistance. We investigated the effects of ionic Ag stress on soil bacterial communities and identified resistant/persistant bacterial populations. Silver treatments of 50 - 400 mg Ag kg-1 soil were established in five soils. Chemical lability measurements using diffusive gradients in thin-film devices confirmed that significant (albeit decreasing) labile Ag concentrations were present throughout the 9-month incubation period. Synchrotron X-ray absorption near edge structure spectroscopy demonstrate that this decreasing lability was due to changes in Ag speciation to less soluble forms such as Ag0 and Ag2S. Real-time PCR and Illumina MiSeq screening of 16S rRNA bacterial genes showed β-diversity in response to Ag pressure, and immediate and significant reductions in 16S rRNA gene counts with varying degrees of recovery. These effects were more strongly influenced by exposure time than by Ag dose at these rates. Ag-selected dominant OTUs principally resided in known persister taxa (mainly Gram positive), including metal-tolerant bacteria and slow-growing Mycobacteria. Soil microbial communities have been implicated as sources of an

Soil development along a glacial chronosequence (Pré de Bar glacier, NW Italy)

NASA Astrophysics Data System (ADS)

Letey, Stéphanie; Freppaz, Michele; Filippa, Gianluca; Stanchi, Silvia; Cerli, Chiara; Pogliotti, Paolo; Zanini, Ermanno

2010-05-01

After the maximum expansion phase of the Little Ice Age, soils located in proglacial areas in the Italian Alps evolved over a time span of about 190 years. In the future, as a consequence of climate change, additional areas will become ice-free and therefore subject to pedogenesis. In such conditions, ice retreat time and topography are expected to play a major role among soil formation factors. Due to extreme environmental characteristics, soil evolution will be rather slow, and heavily influenced by severe soil loss phenomena (e.g. water erosion due to extreme rainfall event and snowmelt, avalanche erosion). We investigated the soil formation along a glacial chronosequence of an Alpine glacier foreland. The Pré de Bar glacier is located in North West Italy (Aosta Valley Region), in the Mont Blanc massif, between 3750 and 2150 m a.s.l. and it covers an area of 340 ha. The glacier was chosen because of the availability of old photographs documenting the glacier retreat phases starting from 1820. At the present time, the cumulative retreat length of the Pré de Bar glacier has reached 1600 m. Along this length, sampling sites were established at 6 successional stages from 6 to 189 years since deglaciation, from 2100 to 1880 m a.s.l.. Soil profiles were opened and sampled according to diagnostic horizons, then they were characterized by means of standard chemical and physical methods. Moreover, as recently deglaciated soils, characterized by incipient pedogenesis, may be particularly vulnerable from the physical point of view, the Atterberg Limits (LL, Liquid Limit; and PL, Plastic Limit) and the WAS (Water Aggregate Stability) index were determined, as indicators of soil physical quality. Soil samples were also subjected to organic matter density fractionation to assess the role of organic C in structure development. All the analyzed soils were classified as Lythic Cryorthents (higher elevation) or Typic Cryorthents (lower elevation) (USDA - Soil Taxonomy), with depth ranging between 25 and 40 cm, regularly increasing with years since deglaciation. A similar trend was observed for the organic C content. A true organo-mineral horizon (A) was first identified approximately 65 years after deglaciation. We observed a general increase of soil physical quality along the chronosequence. Recently deglaciated soils displayed higher vulnerability to aggregate and consistence losses, i.e. lower LL and scarce or no plasticity, while the profiles at lower altitudes, on the oldest surfaces, displayed better properties, i.e. more developed structure and consistence, even for relatively young soils. Therefore in this area the stabilization of the material after the deglaciation resulted relatively fast, with a reduction of its vulnerability to mass and erosive processes, through soil development. This research is carried out as part of "PERMANET - Permafrost Long-Term Monitoring Network", a EU co-funded Interreg Project under the Alpine Space Programme 2007-2013.

Role of root microbiota in plant productivity

PubMed Central

Tkacz, Andrzej; Poole, Philip

2015-01-01

The growing human population requires increasing amounts of food, but modern agriculture has limited possibilities for increasing yields. New crop varieties may be bred to have increased yields and be more resistant to environmental stress and pests. However, they still require fertilization to supplement essential nutrients that are normally limited in the soil. Soil microorganisms present an opportunity to reduce the requirement for inorganic fertilization in agriculture. Microorganisms, due to their enormous genetic pool, are also a potential source of biochemical reactions that recycle essential nutrients for plant growth. Microbes that associate with plants can be considered to be part of the plant’s pan-genome. Therefore, it is essential for us to understand microbial community structure and their ‘metagenome’ and how it is influenced by different soil types and crop varieties. In the future we may be able to modify and better utilize the soil microbiota potential for promoting plant growth. PMID:25908654

Subacute toxicity of copper and glyphosate and their interaction to earthworm (Eisenia fetida).

PubMed

Zhou, Chui-Fan; Wang, Yu-Jun; Li, Cheng-Cheng; Sun, Rui-Juan; Yu, Yuan-Chun; Zhou, Dong-Mei

2013-09-01

Glyphosate (GPS) and copper (Cu) are common pollutants in soils, and commonly co-exist. Due to the chemical structure of GPS, it can form complexes of heavy metals and interface their bioavailability in soil environment. In order to explore the interactions between GPS and Cu, subacute toxicity tests of Cu and GPS on soil invertebrate earthworms (Eisenia fetida) were conducted. The relative weight loss and whole-worm metal burdens increased significantly with the increasing exposure concentration of Cu, while the toxicity of GPS was insignificant. The joint toxicity data showed that the relative weight loss and the uptake of Cu, as well as the superoxide dismutase, catalase and malondialdehyde activities, were significantly alleviated in the present of GPS, which indicated that GPS could reduce the toxicity and bioavailability of Cu in the soil because of its strong chelating effects. Copyright © 2013 Elsevier Ltd. All rights reserved.

Energy Dissipation in Earthquake Soil Structure Interaction: The September 3rd, 2016 M5.8 Pawnee Oklahoma Earthquake

NASA Astrophysics Data System (ADS)

Yang, H.; Sinha, S. K.; Feng, Y.; Jeremic, B.

2016-12-01

The M5.8 earthquake occurred in Pawnee, Oklahoma on September 3rd 2016 is the strongest seismic event recorded in Oklahoma. Soil structure interaction (SSI) played an important role in this tragic event. As a major aspect of SSI analysis, the propagation and dissipation of seismic energy will be studied in depth, with particular focus on the ground motion recorded in this earthquake. Seismic energy propagates from seismic source to the SSI system and is dissipated within and around the SSI system. Energy dissipation with the SSI system is related to inelastic behavior of soil, rock, contact zone (foundation-soil/rock), structural components and energy dissipators. Accurate evaluation of seismic energy can be used to optimize SSI system for safety and economy. The SSI system can be designed so that majority of seismic energy is dissipated within soil and soil-foundation contact zone, away from the structure.Accurate and theoretically sound modeling of propagation and dissipation is essential to use of seismic energy for design and assessment. The rate of plastic work is defined as the product of stress and the rate of plastic strain. On the other hand, plastic dissipation is defined as a form of heat transfer. The difference between these two quantities, which has been neglected in many studies, is a plastic part of the free energy. By considering energy storage and dissipation at both micro (particle) scale and macro (continuum) scale, it can be shown that the plastic free energy is an intrinsic attribute at the continuum scale due to particle rearrangement. Proper application of thermodynamics to finite element simulations, plastic dissipation can be correctly modeled. Examples will be used to illustrate above point on both constitutive, single element and SSI model scales. In addition, propagation of seismic energy, its dissipation (timing and location) will be used to illustrate use in design and assessment.

Soil and public health: invisible bridges

NASA Astrophysics Data System (ADS)

Pachepsky, Yakov

2017-04-01

Public health institutions, as ancient as civilizations itself, are intrinsically connected with soils. The massive body of the empirical knowledge about this connection has been accumulated. Recently unraveling the underlying mechanisms of this link has begun, and many of them appear to have the microbiological origin. The impressive progress in understanding the nexus between soil and health has been achieved by experimentation with preserved soil microbial systems functioning along with the metagenomic characterization. The objective of this work is to present an overview of some recent onsets. In the food safety arena, survival of human pathogens in soils has been related to the degree of soil eutrophication and/or related structure of soil microbial communities. Soil microbial systems affect the affinity of plants to internalizing pathogenic organisms. Pharmaceutical arsenals benefit from using field soil environment for developing antibiotics. Enzyme production by soil bacteria is used as the signal source for drug activation. Sanitary functions of sols are dependent on soil microbial system workings. The healthy living can be enhanced by the human immune system training received from direct contact with soils. The hygiene hypothesis considers the microbial input due to exposure to soil as the essential ecosystem service. The invisible links between soil and public health result in large-scale consequences. Examples of concurrent degradation of soil and public health are worth scrutinizing. Public health records can provide valuable sources of 'soil-public health' interactions. It may be worthwhile to examine current assessments of soil health from the public health standpoint. Soil management can be an efficient instrument of public health control.

Algological and Mycological Characterization of Soils under Pine and Birch Forests in the Pasvik Reserve

NASA Astrophysics Data System (ADS)

Korneikova, M. V.; Redkina, V. V.; Shalygina, R. R.

2018-02-01

The structure of algological and mycological complexes in Al-Fe-humus podzols (Albic Podzols) under pine and birch forests of the Pasvik Reserve is characterized. The number of micromycetes is higher in more acid soils of the pine forest, while the species diversity is greater under the birch forest. The genus Penicillium includes the largest number of species. The greatest abundance and occurrence frequency are typical for Penicillium spinulosum, P. glabrum, and Trichoderma viride in pine forest and for Umbelopsis isabellina, Mucor sp., Mortierella alpina, P. glabrum, Aspergillus ustus, Trichoderma viride, and T. koningii in birch forest. Cyanobacteria-algal cenoses of the investigated soils are predominated by green algae. Soils under birch forest are distinguished by a greater diversity of algal groups due to the presence of diatoms and xanthophytes. Species of frequent occurrence are represented by Pseudococcomyxa simplex and Parietochloris alveolaris in soils of the pine forest and by Tetracystis cf. aplanospora, Halochlorella rubescens, Pseudococcomyxa simplex, Fottea stichococcoides, Klebsormidium flaccidum, Hantzschia amphioxys, Microcoleus vaginatus, and Aphanocapsa sp. in soils under birch forest

Application of Electrokinetic Stabilisation (EKS) Method for Soft Soil: A Review

NASA Astrophysics Data System (ADS)

Azhar, ATS; Azim, MAM; Syakeera, NN; Jefferson, IF; Rogers, CDF

2017-08-01

Soil properties such as low shear strength, excessive compression, collapsing behavior, high swell potential are some of the undesirable properties of soils in geotechnical engineering and those properties would cause severe distress to the structures. To solve these, an innovative stabilization of Electrokinetic (EKS) has been introduced. Electrokinetic is an applicable technique to transport charged particles and fluid in an electric potential. The EKS demonstrates changes in soil pH due to electrolysis reactions, water flow between the electrodes and migration of ions towards the cathode. This treatment has proven its efficiency in consolidating organic, peat and clayey silt as well as less expensive than other methods. Otherwise, this method also gives advantage by not disturbing site. The primary objective of this review is to discuss the application of electrokinetic and to investigate the current knowledge of electrokinetic in geotechnical application through a literature search and review, including consideration of certain aspects related to the soft soil application that may be relevant to the future study and at the same time addressing some key issues and their implications on soil behaviors.

Effect of soil property uncertainties on permafrost thaw projections: A calibration-constrained analysis

DOE PAGES

Harp, Dylan R.; Atchley, Adam L.; Painter, Scott L.; ...

2016-02-11

Here, the effect of soil property uncertainties on permafrost thaw projections are studied using a three-phase subsurface thermal hydrology model and calibration-constrained uncertainty analysis. The Null-Space Monte Carlo method is used to identify soil hydrothermal parameter combinations that are consistent with borehole temperature measurements at the study site, the Barrow Environmental Observatory. Each parameter combination is then used in a forward projection of permafrost conditions for the 21more » $$^{st}$$ century (from calendar year 2006 to 2100) using atmospheric forcings from the Community Earth System Model (CESM) in the Representative Concentration Pathway (RCP) 8.5 greenhouse gas concentration trajectory. A 100-year projection allows for the evaluation of intra-annual uncertainty due to soil properties and the inter-annual variability due to year to year differences in CESM climate forcings. After calibrating to borehole temperature data at this well-characterized site, soil property uncertainties are still significant and result in significant intra-annual uncertainties in projected active layer thickness and annual thaw depth-duration even with a specified future climate. Intra-annual uncertainties in projected soil moisture content and Stefan number are small. A volume and time integrated Stefan number decreases significantly in the future climate, indicating that latent heat of phase change becomes more important than heat conduction in future climates. Out of 10 soil parameters, ALT, annual thaw depth-duration, and Stefan number are highly dependent on mineral soil porosity, while annual mean liquid saturation of the active layer is highly dependent on the mineral soil residual saturation and moderately dependent on peat residual saturation. By comparing the ensemble statistics to the spread of projected permafrost metrics using different climate models, we show that the effect of calibration-constrained uncertainty in soil properties, although significant, is less than that produced by structural climate model uncertainty for this location.« less

Effect of soil property uncertainties on permafrost thaw projections: A calibration-constrained analysis

DOE PAGES

Harp, D. R.; Atchley, A. L.; Painter, S. L.; ...

2015-06-29

The effect of soil property uncertainties on permafrost thaw projections are studied using a three-phase subsurface thermal hydrology model and calibration-constrained uncertainty analysis. The Null-Space Monte Carlo method is used to identify soil hydrothermal parameter combinations that are consistent with borehole temperature measurements at the study site, the Barrow Environmental Observatory. Each parameter combination is then used in a forward projection of permafrost conditions for the 21st century (from calendar year 2006 to 2100) using atmospheric forcings from the Community Earth System Model (CESM) in the Representative Concentration Pathway (RCP) 8.5 greenhouse gas concentration trajectory. A 100-year projection allows formore » the evaluation of intra-annual uncertainty due to soil properties and the inter-annual variability due to year to year differences in CESM climate forcings. After calibrating to borehole temperature data at this well-characterized site, soil property uncertainties are still significant and result in significant intra-annual uncertainties in projected active layer thickness and annual thaw depth-duration even with a specified future climate. Intra-annual uncertainties in projected soil moisture content and Stefan number are small. A volume and time integrated Stefan number decreases significantly in the future climate, indicating that latent heat of phase change becomes more important than heat conduction in future climates. Out of 10 soil parameters, ALT, annual thaw depth-duration, and Stefan number are highly dependent on mineral soil porosity, while annual mean liquid saturation of the active layer is highly dependent on the mineral soil residual saturation and moderately dependent on peat residual saturation. As a result, by comparing the ensemble statistics to the spread of projected permafrost metrics using different climate models, we show that the effect of calibration-constrained uncertainty in soil properties, although significant, is less than that produced by structural climate model uncertainty for this location.« less

Effect of soil property uncertainties on permafrost thaw projections: a calibration-constrained analysis

NASA Astrophysics Data System (ADS)

Harp, D. R.; Atchley, A. L.; Painter, S. L.; Coon, E. T.; Wilson, C. J.; Romanovsky, V. E.; Rowland, J. C.

2015-06-01

The effect of soil property uncertainties on permafrost thaw projections are studied using a three-phase subsurface thermal hydrology model and calibration-constrained uncertainty analysis. The Null-Space Monte Carlo method is used to identify soil hydrothermal parameter combinations that are consistent with borehole temperature measurements at the study site, the Barrow Environmental Observatory. Each parameter combination is then used in a forward projection of permafrost conditions for the 21st century (from calendar year 2006 to 2100) using atmospheric forcings from the Community Earth System Model (CESM) in the Representative Concentration Pathway (RCP) 8.5 greenhouse gas concentration trajectory. A 100-year projection allows for the evaluation of intra-annual uncertainty due to soil properties and the inter-annual variability due to year to year differences in CESM climate forcings. After calibrating to borehole temperature data at this well-characterized site, soil property uncertainties are still significant and result in significant intra-annual uncertainties in projected active layer thickness and annual thaw depth-duration even with a specified future climate. Intra-annual uncertainties in projected soil moisture content and Stefan number are small. A volume and time integrated Stefan number decreases significantly in the future climate, indicating that latent heat of phase change becomes more important than heat conduction in future climates. Out of 10 soil parameters, ALT, annual thaw depth-duration, and Stefan number are highly dependent on mineral soil porosity, while annual mean liquid saturation of the active layer is highly dependent on the mineral soil residual saturation and moderately dependent on peat residual saturation. By comparing the ensemble statistics to the spread of projected permafrost metrics using different climate models, we show that the effect of calibration-constrained uncertainty in soil properties, although significant, is less than that produced by structural climate model uncertainty for this location.

Distribution of phenanthrene between soil and an aqueous phase in the presence of anionic micelle-like amphiphilic polyurethane particles.

PubMed

Lee, Kangtaek; Choi, Heon-Sik; Kim, Ju-Young; Ahn, Ik-Sung

2003-12-12

Sorption of micelle-like amphiphilic polyurethane (APU) particles to soil was studied and compared to that of a model anionic surfactant, sodium dodecyl sulfate (SDS). Three types of APU particles with different hydrophobicity were synthesized from urethane acrylate anionomers (UAA) and used in this study. Due to the chemically cross-linked structure, APU exhibited less sorption to the soil than SDS and a greater reduction in the sorption of phenanthrene, a model soil contaminant, to the soil was observed in the presence of APU than SDS even though the solubility of phenanthrene was higher in the presence of SDS than APU. A mathematical model was developed to describe the phenanthrene distribution between soil and an aqueous phase containing APU particles. The sorption of phenanthrene to the test soil could be well described by Linear isotherm. APU sorption to the soil was successfully described by Langmuir and Freundlich isotherms. The partition of phenanthrene between water and APU were successfully explained with a single partition coefficient. The model, which accounts for the limited solubilization of phenanthrene in sorbed APU particles, successfully described the experimental data for the distribution of phenanthrene between the soil and the aqueous phase in the presence of APU.

Responses of bacterial community to dibutyl phthalate pollution in a soil-vegetable ecosystem.

PubMed

Kong, Xiao; Jin, Decai; Jin, Shulan; Wang, Zhigang; Yin, Huaqun; Xu, Meiying; Deng, Ye

2018-04-10

Phthalate esters (PAEs) are a type of plasticizer that has aroused great concern due to their mutagenic, teratogenic, and carcinogenic effects, wherefore dibutyl phthalate (DBP) and other PAEs have been listed as priority pollutants. In this study, the impacts of DBP on a soil-vegetable ecosystem were investigated. The results showed that DBP could accumulate within vegetable tissues, and the accumulative effect was enhanced with higher levels of DBP contamination in soils. DBP accumulation also decreased vegetable quality in various ways, including decreased soluble protein content and increased nitrate content. The diversity of bacteria in soils gradually decreased with increasing DBP concentration, while no clear association with endophytic bacteria was observed. Also, the relative abundance, structure, and composition of soil bacterial communities underwent successional change during the DBP degradation period. The variation of bulk soil bacterial community was significantly associated with DBP concentration, while changes in the rhizosphere soil bacteria community were significantly associated with the properties of both soil and vegetables. The results indicated that DBP pollution could increase the health risk from vegetables and alter the biodiversity of indigenous bacteria in soil-vegetable ecosystems, which might further alter ecosystem functions in agricultural fields. Copyright © 2018 Elsevier B.V. All rights reserved.

Fate and transport of selected estrogen compounds in Hawaii soils: effect of soil type and macropores.

PubMed

D'Alessio, Matteo; Vasudevan, Dharni; Lichwa, Joseph; Mohanty, Sanjay K; Ray, Chittaranjan

2014-10-01

The fate and transport of estrogen compounds in the environment is of increasing concern due to their potential impact on freshwater organisms, ecosystems and human health. The behavior of these compounds in batch experiments suggests low mobility, while field studies indicate the persistence of estrogen compounds in the soil with the possibility of migration to surface water as well as groundwater. To better understand the movement of these chemicals through soils, we examined their transport in three different Hawaiian soils and two aqueous matrices. The three different soils used were an Oxisol, a Mollisol and a cinder, characterized by different mineralogical properties and collected at depths of 60-90 cm and 210-240 cm. Two liquid matrices were used; deionized (DI) water containing calcium chloride (CaCl2), and recycled water collected from a wastewater treatment facility. The experiments were conducted in packed and structured columns. Non-equilibrium conditions were observed during the study, especially in the structured soil. This is believed to be primarily related to the presence of macropores in the soil. The presence of macropores resulted in reduced contact time between soil and estrogens, which facilitated their transport. We found that the organic carbon content and mineralogical composition of the soils had a profound effect on the transport of the estrogens. The mobility of estrone (E1) and 17β-estradiol (E2) was greater in cinder than in the other soils. In column experiments with recycled water, earlier breakthrough peaks and longer tails of estrogens were produced compared to those observed using DI water. The use of recycled water for agricultural purposes and the siting of septic tanks and cesspools should be critically reviewed in light of these findings, especially in areas where groundwater is the primary source of potable water, such as Hawaii. Copyright © 2014 Elsevier B.V. All rights reserved.

Effect of freeze-thaw cycles on greenhouse gas fluxes from peat soils

NASA Astrophysics Data System (ADS)

Oh, H. D.; Rezanezhad, F.; Markelov, I.; McCarter, C. P. R.; Van Cappellen, P.

2017-12-01

The ongoing displacement of climate zones by global warming is increasing the frequency and intensity of freeze-thaw cycles in middle and high latitude regions, many of which are dominated by organic soils such as peat. Repeated freezing and thawing of soils changes their physical properties, geochemistry, and microbial community structure, which together govern the biogeochemical cycling of carbon and nutrients. In this presentation, we focus on how freeze-thaw cycles influence greenhouse gas fluxes from peat using a newly developed experimental soil column system that simulates realistic soil temperature profiles during freeze-thaw cycles. We measured the surface and subsurface changes to gas and aqueous phase chemistry to delineate the diffusion pathways and quantify soil greenhouse gas fluxes during freeze-thaw cycles using sulfur hexafluoride (SF6) as a conservative tracer. Three peat columns were assembled inside a temperature controlled chamber with different soil structures. All three columns were packed with 40 cm of undisturbed, slightly decomposed peat, where the soil of two columns had an additional 10 cm layer on top (one with loose Sphagnum moss and one with an impermeable plug). The results indicate that the release of SF6 and CO2 gas from the soil surface was influenced by the recurrent development of a physical ice barrier, which prevented gas exchange between the soil and atmosphere during freezing conditions. With the onset of thawing a pulse of SF6 and CO2 occurred, resulting in a flux of 3.24 and 2095.52 µmol/m2h, respectively, due to the build-up of gases in the liquid-phase pore space during freezing. Additionally, we developed a model to determine the specific diffusion coefficients for each peat column. These data allow us to better predict how increased frequency and intensity of freeze-thaw cycles will affect greenhouse gas emissions in northern peat soils.

Fate and transport of selected estrogen compounds in Hawaii soils: Effect of soil type and macropores

NASA Astrophysics Data System (ADS)

D'Alessio, Matteo; Vasudevan, Dharni; Lichwa, Joseph; Mohanty, Sanjay K.; Ray, Chittaranjan

2014-10-01

The fate and transport of estrogen compounds in the environment is of increasing concern due to their potential impact on freshwater organisms, ecosystems and human health. The behavior of these compounds in batch experiments suggests low mobility, while field studies indicate the persistence of estrogen compounds in the soil with the possibility of migration to surface water as well as groundwater. To better understand the movement of these chemicals through soils, we examined their transport in three different Hawaiian soils and two aqueous matrices. The three different soils used were an Oxisol, a Mollisol and a cinder, characterized by different mineralogical properties and collected at depths of 60-90 cm and 210-240 cm. Two liquid matrices were used; deionized (DI) water containing calcium chloride (CaCl2), and recycled water collected from a wastewater treatment facility. The experiments were conducted in packed and structured columns. Non-equilibrium conditions were observed during the study, especially in the structured soil. This is believed to be primarily related to the presence of macropores in the soil. The presence of macropores resulted in reduced contact time between soil and estrogens, which facilitated their transport. We found that the organic carbon content and mineralogical composition of the soils had a profound effect on the transport of the estrogens. The mobility of estrone (E1) and 17β-estradiol (E2) was greater in cinder than in the other soils. In column experiments with recycled water, earlier breakthrough peaks and longer tails of estrogens were produced compared to those observed using DI water. The use of recycled water for agricultural purposes and the siting of septic tanks and cesspools should be critically reviewed in light of these findings, especially in areas where groundwater is the primary source of potable water, such as Hawaii.

Environmental Life Cycle Assessment Model for Soil Bioengineering Measures on Infrastructure Slopes

NASA Astrophysics Data System (ADS)

Hoerbinger, Stephan; Obriejetan, Michael

2015-04-01

Soil bioengineering techniques can be a helpful instrument for civil engineers taking into account not only technical but also ecological, socio-economic and sustainability aspects. Environmental Life Cycle Assessment (LCA) models can serve as supplementary evaluation methods to economic analyses, taking into account the resource demand and environmental burdens of engineering structures. The presented LCA model includes the functional grade of structures in addition to environmental aspects. When using vegetation as living construction material, several factors have to be considered. There is the provision of ecosystem services of plants, such as the stabilization of the slope through its root-system, CO2 sequestration through biomass production et cetera. However, it must be noted that vegetation can cause security issues on infrastructure facilities and entail costs through the necessity of maintenance works. For this reason, it is necessary to already define the target systems during the planning phase of a soil bioengineering structure. In this way, necessary measures can be adapted in all life cycles of a structure. The objective of the presented LCA model is to serve as a basis for the definition of target systems. In the designed LCA model the soil bioengineering structures are divided into four life phases; construction phase, operational phase, end of life phase and subsequent use phase. A main objective of the LCA model is the understanding of the "Cumulative Energy Demand" (CED) and "Global Warming Potential" (GWP) of soil bioengineering structures during all life cycle phases. Additionally, the biomass production and the CO2 sequestration potential of the used plants are regarded as well as the functional integrity of the soil bioengineering system. In the life phase of soil bioengineering structures, a major part of the energy input is required during the construction phase. This is mainly due to the cumulative energy demand of the inert materials used. The principle of biological engineering constructions is based on the combination of dead and living materials and the emerging positive synergistic effects. The dead auxiliaries (stone, wood, etc.) protect the living plants until they undertake technical functions. During the operational phase of the structure, maintenance work has to be done in order to maintain the protective properties of the used plants. Through measures like cutting the vegetation back to the trunk, energy will be put into the system (e.g. through machine use), but will also be put out in form of biomass. Additionally, carbon is sequestered by the biomass production of the plants. The end of life phase is reached after the projected lifetime of a structure. Outside of zones with plant growth restrictions like within a clearance gauge, soil bioengineering approaches are designed to have a subsequent use phase. That means, that after the actual lifespan of the construction, a forest should have developed and maintain its balance by natural succession. The LCA model aims at supporting sustainable management strategies for CED and GWP as a base for Green Public Procurement and eco- friendly implementation and maintenance of soil bioengineering structures on infrastructure slopes.

Residual impact of aged nZVI on heavy metal-polluted soils.

PubMed

Fajardo, C; Gil-Díaz, M; Costa, G; Alonso, J; Guerrero, A M; Nande, M; Lobo, M C; Martín, M

2015-12-01

In the present study, the residual toxicity and impact of aged nZVI after a leaching experiment on heavy metal (Pb, Zn) polluted soils was evaluated. No negative effects on physico-chemical soil properties were observed after aged nZVI exposure. The application of nZVI to soil produced a significant increase in Fe availability. The impact on soil biodiversity was assessed by fluorescence in situ hybridization (FISH). A significant effect of nZVI application on microbial structure has been recorded in the Pb-polluted soil nZVI-treated. Soil bacteria molecular response, evaluated by RT-qPCR using exposure biomarkers (pykA, katB) showed a decrease in the cellular activity (pykA) due to enhanced intracellular oxidative stress (katB). Moreover, ecotoxicological standardised test on Caenorhabditis elegans (C. elegans) showed a decrease in the growth endpoint in the Pb-polluted soil, and particularly in the nZVI-treated. A different pattern has been observed in Zn-polluted soils: no changes in soil biodiversity, an increase in biological activity and a significant decrease of Zn toxicity on C. elegans growth were observed after aged nZVI exposure. The results reported indicated that the pollutant and its nZVI interaction should be considered to design soil nanoremediation strategies to immobilise heavy metals. Copyright © 2015 Elsevier B.V. All rights reserved.

Responses of soil N-fixing bacteria communities to invasive plant species under different types of simulated acid deposition

NASA Astrophysics Data System (ADS)

Wang, Congyan; Zhou, Jiawei; Jiang, Kun; Liu, Jun; Du, Daolin

2017-06-01

Biological invasions have incurred serious threats to native ecosystems in China, and soil N-fixing bacteria communities (SNB) may play a vital role in the successful plant invasion. Meanwhile, anthropogenic acid deposition is increasing in China, which may modify or upgrade the effects that invasive plant species can cause on SNB. We analyzed the structure and diversity of SNB by means of new generation sequencing technology in soils with different simulated acid deposition (SAD), i.e., different SO4 2- to NO3 - ratios, and where the invasive ( Amaranthus retroflexus L.) and the native species ( Amaranthus tricolor L.) grew mixed or isolated for 3 months. A. retroflexus itself did not exert significant effects on the diversity and richness of SNB but did it under certain SO4 2- to NO3 - ratios. Compared to soils where the native species grew isolated, the soils where the invasive A. retroflexus grew isolated showed lower relative abundance of some SNB classes under certain SAD treatments. Some types of SAD can alter soil nutrient content which in turn could affect SNB diversity and abundance. Specifically, greater SO4 2- to NO3 - ratios tended to have more toxic effects on SNB likely due to the higher exchange capacity of hydroxyl groups (OH-) between SO4 2- and NO3 -. As a conclusion, it can be expected a change in the structure of SNB after A. retroflexus invasion under acid deposition rich in sulfuric acid. This change may create a plant soil feedback favoring future A. retroflexus invasions.

Responses of soil N-fixing bacteria communities to invasive plant species under different types of simulated acid deposition.

PubMed

Wang, Congyan; Zhou, Jiawei; Jiang, Kun; Liu, Jun; Du, Daolin

2017-06-01

Biological invasions have incurred serious threats to native ecosystems in China, and soil N-fixing bacteria communities (SNB) may play a vital role in the successful plant invasion. Meanwhile, anthropogenic acid deposition is increasing in China, which may modify or upgrade the effects that invasive plant species can cause on SNB. We analyzed the structure and diversity of SNB by means of new generation sequencing technology in soils with different simulated acid deposition (SAD), i.e., different SO 4 2- to NO 3 - ratios, and where the invasive (Amaranthus retroflexus L.) and the native species (Amaranthus tricolor L.) grew mixed or isolated for 3 months. A. retroflexus itself did not exert significant effects on the diversity and richness of SNB but did it under certain SO 4 2- to NO 3 - ratios. Compared to soils where the native species grew isolated, the soils where the invasive A. retroflexus grew isolated showed lower relative abundance of some SNB classes under certain SAD treatments. Some types of SAD can alter soil nutrient content which in turn could affect SNB diversity and abundance. Specifically, greater SO 4 2- to NO 3 - ratios tended to have more toxic effects on SNB likely due to the higher exchange capacity of hydroxyl groups (OH - ) between SO 4 2- and NO 3 - . As a conclusion, it can be expected a change in the structure of SNB after A. retroflexus invasion under acid deposition rich in sulfuric acid. This change may create a plant soil feedback favoring future A. retroflexus invasions.

Generation of High Frequency Response in a Dynamically Loaded, Nonlinear Soil Column

DOE Office of Scientific and Technical Information (OSTI.GOV)

Spears, Robert Edward; Coleman, Justin Leigh

2015-08-01

Detailed guidance on linear seismic analysis of soil columns is provided in “Seismic Analysis of Safety-Related Nuclear Structures and Commentary (ASCE 4, 1998),” which is currently under revision. A new Appendix in ASCE 4-2014 (draft) is being added to provide guidance for nonlinear time domain analysis which includes evaluation of soil columns. When performing linear analysis, a given soil column is typically evaluated with a linear, viscous damped constitutive model. When submitted to a sine wave motion, this constitutive model produces a smooth hysteresis loop. For nonlinear analysis, the soil column can be modelled with an appropriate nonlinear hysteretic soilmore » model. For the model in this paper, the stiffness and energy absorption result from a defined post yielding shear stress versus shear strain curve. This curve is input with tabular data points. When submitted to a sine wave motion, this constitutive model produces a hysteresis loop that looks similar in shape to the input tabular data points on the sides with discontinuous, pointed ends. This paper compares linear and nonlinear soil column results. The results show that the nonlinear analysis produces additional high frequency response. The paper provides additional study to establish what portion of the high frequency response is due to numerical noise associated with the tabular input curve and what portion is accurately caused by the pointed ends of the hysteresis loop. Finally, the paper shows how the results are changed when a significant structural mass is added to the top of the soil column.« less

Visual assessment of soil structure quality in an agroextractivist system in Southeastern Amazonia

NASA Astrophysics Data System (ADS)

Fernanda Simões da Silva, Laura; Stuchi Boschi, Raquel; Ortega Gomes, Matheus; Cooper, Miguel

2016-04-01

Soil structure is considered a key factor in the functioning of soil, affecting its ability to support plant and animal life, and moderate environmental quality. Numerous methods are available to evaluate soil structure based on physical, chemical and biological indicators. Among the physical indicators, the attributes most commonly used are soil bulk density, porosity, soil resistance to penetration, tensile strength of aggregates, soil water infiltration, and available water. However, these methods are expensive and generally time costly for sampling and laboratorial procedures. Recently, evaluations using qualitative and semi-quantitative indicators of soil structure quality have gained importance. Among these methods, the method known as Visual Evaluation of Soil Structure (VESS) (Ball et al., 2007; Guimarães et al., 2011) can supply this necessity in temperate and tropical regions. The study area is located in the Piranheira Praialta Agroextrativist Settlement Project in the county of Nova Ipixuna, Pará, Brazil. Two toposequences were chosen, one under native forest and the other under pasture. Pits were opened in different landscape positions (upslope, midslope and downslope) for soil morphological, micromorphological and physical characterization. The use of the soil visual evaluation method (SVE) consisted in collecting an undisturbed soil sample of approximately 25 cm in length, 20 cm in width and 10 cm in depth. 12 soil samples were taken for each land use. The samples were manually fragmented, respecting the fracture planes between the aggregates. The SVE was done comparing the fragmented sample with a visual chart and scores were given to the soil structure. The categories that define the soil structure quality (Qe) vary from 1 to 5. Lower scores mean better soil structure. The final score calculation was done using the classification key of Ball et al. (2007) adapted by Guimarães (2011). A change in soil structure was observed between forest and pasture. The presence of layers of different depths, and size and shape of aggregates resulted in a lower Qe in the forest soils (Qe= 2,04 ±0,4), followed by the pasture (Qe= 3,09 ± 1,3). These results indicate certain degradation in the soil structure in the pasture. The variability of the soil structure in the forest samples was lower. The pasture samples presented a worse soil structure when compared to the forest, although their Qe values can be considered good.

Testing association between soil bacterial diversity and soil carbon storage on the Loess Plateau.

PubMed

Yang, Yang; Dou, Yanxing; An, Shaoshan

2018-06-01

Bacteria are widely distributed and play an important role in soil carbon (C) cycling. The impact of soil bacterial diversity on soil C storage has been well established, yet little is known about the underlying mechanisms and the interactions among them. Here, we examined the association between soil bacterial diversity and soil C storage in relation to vegetation restoration on the Loess Plateau. The dominant phyla among land use types (artificial forest, Af; natural shrubland, Ns; artificial grassland, Ag; natural grassland, Ng; slope cropland, Sc) were Acidobacteria, Actinobacteria, Alphaproteobacteria, and Betaproteobacteria, which transited from Acidobacteria-dominant to Actinobacteria-dominant community due to vegetation restoration. Soil C storage and the Shannon diversity index of soil bacterial community (H Bacteria ) showed the order Ns > Ng > Af > Ag > Sc, whereas no significant difference was found in Good's coverage (p > .05). Further, a strong relationship was observed between the relative abundance of dominant bacterial groups and soil C storage (p < .05). Additionally, soil bacterial diversity was closely related to soil C storage based on the structural equation model (SEM) and generalized additive models (GAMs). Specifically, soil C storage had the largest deterministic effects, explaining >70% of the variation and suggesting a strong association between soil C storage and soil bacterial diversity. Overall, we propose that further studies are necessary with a focus on the soil bacterial groups with specific functions in relation to soil C storage on the Loess Plateau. Copyright © 2018 Elsevier B.V. All rights reserved.

Evidence for Different Reaction Pathways for Liquid and Granular Micronutrients in a Calcareous Soil

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hettiarachchi, Ganga M.; McLaughlin, Mike J.; Scheckel, Kirk G.

2008-06-16

The benefits of Mn and Zn fluid fertilizers over conventional granular products in calcareous sandy loam soils have been agronomically demonstrated. We hypothesized that the differences in the effectiveness between granular and fluid Mn and Zn fertilizers is due to different Mn and Zn reaction processes in and around fertilizer granules and fluid fertilizer bands. We used a combination of several synchrotron-based x-ray techniques, namely, spatially resolved micro-x-ray fluorescence (?-XRF), micro-x-ray absorption near edge structure spectroscopy (?-XANES), and bulk-XANES and -extended x-ray absorption fine structure (EXAFS) spectroscopy, along with several laboratory-based x-ray techniques to speciate different fertilizer-derived Mn and Znmore » species in highly calcareous soils to understand the chemistry underlying the observed differential behavior of fluid and granular micronutrient forms. Micro-XRF mapping of soil-fertilizer reactions zones indicated that the mobility of Mn and Zn from liquid fertilizer was greater than that observed for equivalent granular sources of these micronutrients in soil. After application of these micronutrient fertilizers to soil, Mn and Zn from liquid fertilizers were found to remain in comparatively more soluble solid forms, such as hydrated Mn phosphate-like, Mn calcite-like, adsorbed Zn-like, and Zn silicate-like phases, whereas Mn and Zn from equivalent granular sources tended to transform into comparatively less soluble solid forms such as Mn oxide-like, Mn carbonate-like, and Zn phosphate-like phases.« less

Soil properties and not inputs control carbon : nitrogen : phosphorus ratios in cropped soils in the long term

NASA Astrophysics Data System (ADS)

Frossard, Emmanuel; Buchmann, Nina; Bünemann, Else K.; Kiba, Delwende I.; Lompo, François; Oberson, Astrid; Tamburini, Federica; Traoré, Ouakoltio Y. A.

2016-02-01

Stoichiometric approaches have been applied to understand the relationship between soil organic matter dynamics and biological nutrient transformations. However, very few studies have explicitly considered the effects of agricultural management practices on the soil C : N : P ratio. The aim of this study was to assess how different input types and rates would affect the C : N : P molar ratios of bulk soil, organic matter and microbial biomass in cropped soils in the long term. Thus, we analysed the C, N, and P inputs and budgets as well as soil properties in three long-term experiments established on different soil types: the Saria soil fertility trial (Burkina Faso), the Wagga Wagga rotation/stubble management/soil preparation trial (Australia), and the DOK (bio-Dynamic, bio-Organic, and "Konventionell") cropping system trial (Switzerland). In each of these trials, there was a large range of C, N, and P inputs which had a strong impact on element concentrations in soils. However, although C : N : P ratios of the inputs were highly variable, they had only weak effects on soil C : N : P ratios. At Saria, a positive correlation was found between the N : P ratio of inputs and microbial biomass, while no relation was observed between the nutrient ratios of inputs and soil organic matter. At Wagga Wagga, the C : P ratio of inputs was significantly correlated to total soil C : P, N : P, and C : N ratios, but had no impact on the elemental composition of microbial biomass. In the DOK trial, a positive correlation was found between the C budget and the C to organic P ratio in soils, while the nutrient ratios of inputs were not related to those in the microbial biomass. We argue that these responses are due to differences in soil properties among sites. At Saria, the soil is dominated by quartz and some kaolinite, has a coarse texture, a fragile structure, and a low nutrient content. Thus, microorganisms feed on inputs (plant residues, manure). In contrast, the soil at Wagga Wagga contains illite and haematite, is richer in clay and nutrients, and has a stable structure. Thus, organic matter is protected from mineralization and can therefore accumulate, allowing microorganisms to feed on soil nutrients and to keep a constant C : N : P ratio. The DOK soil represents an intermediate situation, with high nutrient concentrations, but a rather fragile soil structure, where organic matter does not accumulate. We conclude that the study of C, N, and P ratios is important to understand the functioning of cropped soils in the long term, but that it must be coupled with a precise assessment of element inputs and budgets in the system and a good understanding of the ability of soils to stabilize C, N, and P compounds.

Effect of farmyard manure rate on water erosion of a Mediterranean soil: determination of the critical point of inefficacy

NASA Astrophysics Data System (ADS)

Annabi, Mohamed; Bahri, Haithem; Cheick M'Hamed, Hatem; Hermessi, Taoufik

2016-04-01

Intensive cultivation of soils, using multiple soil tillage, led to the decrease of their organic matter content and structural stability in several cultivated area of the Mediterranean countries. In these degraded soils, the addition of organic products, traditionally the animal manure, should improve soil health among them the resistance of soil to water erosion. The aim of this study was to evaluate after 1 year of the addition to a cambisoil different doses of farmyard manure on soil organic matter content, on microbial activity and on aggregate stability (proxy to soil resistance to water erosion). The statistical process (bilinear model) was used to found a point at which the addition of the organic product no longer influences the soil resistance to erosion. The farmyard manure issued from a cow breeding was composted passively during 4 months and used to amend a small plots of a cultivated cambisol (silty-clay texture, 0.9% TOC) located in the northeast of Tunisia (Morneg region). The manure was intimately incorporate to the soil. The manure organic matter content was 31%, and its isohumic coefficient was 49%. Twelve dose of manure were tested: from 0 to 220 t C.ha-1. The experiment was started on September 2011. In November 2012, soil sampling was done and soil organic carbon content (Walkley-Black method) and soil aggregate stability (wet method of Le Bissonnais) were assessed. A laboratory incubations of soil+manure mixtures, with the same proportions as tested in the field conditions, was carried at 28°C and at 75% of the mixture field capacity water retention. Carbon mineralization was monitored during three months incubation. Results show that the addition of farmyard manure stimulated the microbial activity proportionally to the added dose. This activation is due to the presence of easily biodegradable carbon in the manure, which increases with increasing manure dose. On the other hand, the addition of manure increased the aggregate stability with the manure dose increasing. This aggregate stabilization is due to the stimulation of microbial activity (r= 0.72, n=12) which can improves the aggregate stability by increasing the aggregate cohesion by adhesive substances such as the polysaccharides and by the enmeshment of aggregate by fungal hyphea. The increase of organic matter content due to manure addition contributes also to aggregate stabilization with a high regression slope with the first manure doses (less then 120 t C.ha-1). Using a bi-linear model, reach 2.3% of soil organic carbon seems to be a critical level from which the aggregate stability evolves little.

The underlying processes of a soil mite metacommunity on a small scale.

PubMed

Dong, Chengxu; Gao, Meixiang; Guo, Chuanwei; Lin, Lin; Wu, Donghui; Zhang, Limin

2017-01-01

Metacommunity theory provides an understanding of how ecological processes regulate local community assemblies. However, few field studies have evaluated the underlying mechanisms of a metacommunity on a small scale through revealing the relative roles of spatial and environmental filtering in structuring local community composition. Based on a spatially explicit sampling design in 2012 and 2013, this study aims to evaluate the underlying processes of a soil mite metacommunity on a small spatial scale (50 m) in a temperate deciduous forest located at the Maoershan Ecosystem Research Station, Northeast China. Moran's eigenvector maps (MEMs) were used to model independent spatial variables. The relative importance of spatial (including trend variables, i.e., geographical coordinates, and broad- and fine-scale spatial variables) and environmental factors in driving the soil mite metacommunity was determined by variation partitioning. Mantel and partial Mantel tests and a redundancy analysis (RDA) were also used to identify the relative contributions of spatial and environmental variables. The results of variation partitioning suggested that the relatively large and significant variance was a result of spatial variables (including broad- and fine-scale spatial variables and trend), indicating the importance of dispersal limitation and autocorrelation processes. The significant contribution of environmental variables was detected in 2012 based on a partial Mantel test, and soil moisture and soil organic matter were especially important for the soil mite metacommunity composition in both years. The study suggested that the soil mite metacommunity was primarily regulated by dispersal limitation due to broad-scale and neutral biotic processes at a fine-scale and that environmental filtering might be of subordinate importance. In conclusion, a combination of metacommunity perspectives between neutral and species sorting theories was suggested to be important in the observed structure of the soil mite metacommunity at the studied small scale.

Percolation properties of 3-D multiscale pore networks: how connectivity controls soil filtration processes

NASA Astrophysics Data System (ADS)

Perrier, E. M. A.; Bird, N. R. A.; Rieutord, T. B.

2010-04-01

Quantifying the connectivity of pore networks is a key issue not only for modelling fluid flow and solute transport in porous media but also for assessing the ability of soil ecosystems to filter bacteria, viruses and any type of living microorganisms as well inert particles which pose a contamination risk. Straining is the main mechanical component of filtration processes: it is due to size effects, when a given soil retains a conveyed entity larger than the pores through which it is attempting to pass. We postulate that the range of sizes of entities which can be trapped inside soils has to be associated with the large range of scales involved in natural soil structures and that information on the pore size distribution has to be complemented by information on a Critical Filtration Size (CFS) delimiting the transition between percolating and non percolating regimes in multiscale pore networks. We show that the mass fractal dimensions which are classically used in soil science to quantify scaling laws in observed pore size distributions can also be used to build 3-D multiscale models of pore networks exhibiting such a critical transition. We extend to the 3-D case a new theoretical approach recently developed to address the connectivity of 2-D fractal networks (Bird and Perrier, 2009). Theoretical arguments based on renormalisation functions provide insight into multi-scale connectivity and a first estimation of CFS. Numerical experiments on 3-D prefractal media confirm the qualitative theory. These results open the way towards a new methodology to estimate soil filtration efficiency from the construction of soil structural models to be calibrated on available multiscale data.

Percolation properties of 3-D multiscale pore networks: how connectivity controls soil filtration processes

NASA Astrophysics Data System (ADS)

Perrier, E. M. A.; Bird, N. R. A.; Rieutord, T. B.

2010-10-01

Quantifying the connectivity of pore networks is a key issue not only for modelling fluid flow and solute transport in porous media but also for assessing the ability of soil ecosystems to filter bacteria, viruses and any type of living microorganisms as well inert particles which pose a contamination risk. Straining is the main mechanical component of filtration processes: it is due to size effects, when a given soil retains a conveyed entity larger than the pores through which it is attempting to pass. We postulate that the range of sizes of entities which can be trapped inside soils has to be associated with the large range of scales involved in natural soil structures and that information on the pore size distribution has to be complemented by information on a critical filtration size (CFS) delimiting the transition between percolating and non percolating regimes in multiscale pore networks. We show that the mass fractal dimensions which are classically used in soil science to quantify scaling laws in observed pore size distributions can also be used to build 3-D multiscale models of pore networks exhibiting such a critical transition. We extend to the 3-D case a new theoretical approach recently developed to address the connectivity of 2-D fractal networks (Bird and Perrier, 2009). Theoretical arguments based on renormalisation functions provide insight into multi-scale connectivity and a first estimation of CFS. Numerical experiments on 3-D prefractal media confirm the qualitative theory. These results open the way towards a new methodology to estimate soil filtration efficiency from the construction of soil structural models to be calibrated on available multiscale data.

The underlying processes of a soil mite metacommunity on a small scale

PubMed Central

Guo, Chuanwei; Lin, Lin; Wu, Donghui; Zhang, Limin

2017-01-01

Metacommunity theory provides an understanding of how ecological processes regulate local community assemblies. However, few field studies have evaluated the underlying mechanisms of a metacommunity on a small scale through revealing the relative roles of spatial and environmental filtering in structuring local community composition. Based on a spatially explicit sampling design in 2012 and 2013, this study aims to evaluate the underlying processes of a soil mite metacommunity on a small spatial scale (50 m) in a temperate deciduous forest located at the Maoershan Ecosystem Research Station, Northeast China. Moran’s eigenvector maps (MEMs) were used to model independent spatial variables. The relative importance of spatial (including trend variables, i.e., geographical coordinates, and broad- and fine-scale spatial variables) and environmental factors in driving the soil mite metacommunity was determined by variation partitioning. Mantel and partial Mantel tests and a redundancy analysis (RDA) were also used to identify the relative contributions of spatial and environmental variables. The results of variation partitioning suggested that the relatively large and significant variance was a result of spatial variables (including broad- and fine-scale spatial variables and trend), indicating the importance of dispersal limitation and autocorrelation processes. The significant contribution of environmental variables was detected in 2012 based on a partial Mantel test, and soil moisture and soil organic matter were especially important for the soil mite metacommunity composition in both years. The study suggested that the soil mite metacommunity was primarily regulated by dispersal limitation due to broad-scale and neutral biotic processes at a fine-scale and that environmental filtering might be of subordinate importance. In conclusion, a combination of metacommunity perspectives between neutral and species sorting theories was suggested to be important in the observed structure of the soil mite metacommunity at the studied small scale. PMID:28481906

Developmental morphology of cover crop species exhibit contrasting behaviour to changes in soil bulk density, revealed by X-ray computed tomography

PubMed Central

Burr-Hersey, Jasmine E.; Mooney, Sacha J.; Bengough, A. Glyn; Mairhofer, Stefan

2017-01-01

Plant roots growing through soil typically encounter considerable structural heterogeneity, and local variations in soil dry bulk density. The way the in situ architecture of root systems of different species respond to such heterogeneity is poorly understood due to challenges in visualising roots growing in soil. The objective of this study was to visualise and quantify the impact of abrupt changes in soil bulk density on the roots of three cover crop species with contrasting inherent root morphologies, viz. tillage radish (Raphanus sativus), vetch (Vicia sativa) and black oat (Avena strigosa). The species were grown in soil columns containing a two-layer compaction treatment featuring a 1.2 g cm-3 (uncompacted) zone overlaying a 1.4 g cm-3 (compacted) zone. Three-dimensional visualisations of the root architecture were generated via X-ray computed tomography, and an automated root-segmentation imaging algorithm. Three classes of behaviour were manifest as a result of roots encountering the compacted interface, directly related to the species. For radish, there was switch from a single tap-root to multiple perpendicular roots which penetrated the compacted zone, whilst for vetch primary roots were diverted more horizontally with limited lateral growth at less acute angles. Black oat roots penetrated the compacted zone with no apparent deviation. Smaller root volume, surface area and lateral growth were consistently observed in the compacted zone in comparison to the uncompacted zone across all species. The rapid transition in soil bulk density had a large effect on root morphology that differed greatly between species, with major implications for how these cover crops will modify and interact with soil structure. PMID:28753645

Developmental morphology of cover crop species exhibit contrasting behaviour to changes in soil bulk density, revealed by X-ray computed tomography.

PubMed

Burr-Hersey, Jasmine E; Mooney, Sacha J; Bengough, A Glyn; Mairhofer, Stefan; Ritz, Karl

2017-01-01

Plant roots growing through soil typically encounter considerable structural heterogeneity, and local variations in soil dry bulk density. The way the in situ architecture of root systems of different species respond to such heterogeneity is poorly understood due to challenges in visualising roots growing in soil. The objective of this study was to visualise and quantify the impact of abrupt changes in soil bulk density on the roots of three cover crop species with contrasting inherent root morphologies, viz. tillage radish (Raphanus sativus), vetch (Vicia sativa) and black oat (Avena strigosa). The species were grown in soil columns containing a two-layer compaction treatment featuring a 1.2 g cm-3 (uncompacted) zone overlaying a 1.4 g cm-3 (compacted) zone. Three-dimensional visualisations of the root architecture were generated via X-ray computed tomography, and an automated root-segmentation imaging algorithm. Three classes of behaviour were manifest as a result of roots encountering the compacted interface, directly related to the species. For radish, there was switch from a single tap-root to multiple perpendicular roots which penetrated the compacted zone, whilst for vetch primary roots were diverted more horizontally with limited lateral growth at less acute angles. Black oat roots penetrated the compacted zone with no apparent deviation. Smaller root volume, surface area and lateral growth were consistently observed in the compacted zone in comparison to the uncompacted zone across all species. The rapid transition in soil bulk density had a large effect on root morphology that differed greatly between species, with major implications for how these cover crops will modify and interact with soil structure.

Microarray-based analysis of gene expression in lycopersicon esculentum seedling roots in response to cadmium, chromium, mercury, and lead.

PubMed

Hou, Jing; Liu, Xinhui; Wang, Juan; Zhao, Shengnan; Cui, Baoshan

2015-02-03

The effects of heavy metals in agricultural soils have received special attention due to their potential for accumulation in crops, which can affect species at all trophic levels. Therefore, there is a critical need for reliable bioassays for assessing risk levels due to heavy metals in agricultural soil. In the present study, we used microarrays to investigate changes in gene expression of Lycopersicon esculentum in response to Cd-, Cr-, Hg-, or Pb-spiked soil. Exposure to (1)/10 median lethal concentrations (LC50) of Cd, Cr, Hg, or Pb for 7 days resulted in expression changes in 29 Cd-specific, 58 Cr-specific, 192 Hg-specific and 864 Pb-specific genes as determined by microarray analysis, whereas conventional morphological and physiological bioassays did not reveal any toxicant stresses. Hierarchical clustering analysis showed that the characteristic gene expression profiles induced by Cd, Cr, Hg, and Pb were distinct from not only the control but also one another. Furthermore, a total of three genes related to "ion transport" for Cd, 14 genes related to "external encapsulating structure organization", "reproductive developmental process", "lipid metabolic process" and "response to stimulus" for Cr, 11 genes related to "cellular metabolic process" and "cellular response to stimulus" for Hg, 78 genes related to 20 biological processes (e.g., DNA metabolic process, monosaccharide catabolic process, cell division) for Pb were identified and selected as their potential biomarkers. These findings demonstrated that microarray-based analysis of Lycopersicon esculentum was a sensitive tool for the early detection of potential toxicity of heavy metals in agricultural soil, as well as an effective tool for identifying the heavy metal-specific genes, which should be useful for assessing risk levels due to heavy metals in agricultural soil.

Comparing the Performance of Three Land Models in Global C Cycle Simulations: A Detailed Structural Analysis: Structural Analysis of Land Models

DOE Office of Scientific and Technical Information (OSTI.GOV)

Rafique, Rashid; Xia, Jianyang; Hararuk, Oleksandra

Land models are valuable tools to understand the dynamics of global carbon (C) cycle. Various models have been developed and used for predictions of future C dynamics but uncertainties still exist. Diagnosing the models’ behaviors in terms of structures can help to narrow down the uncertainties in prediction of C dynamics. In this study three widely used land surface models, namely CSIRO’s Atmosphere Biosphere Land Exchange (CABLE) with 9 C pools, Community Land Model (version 3.5) combined with Carnegie-Ames-Stanford Approach (CLM-CASA) with 12 C pools and Community Land Model (version 4) (CLM4) with 26 C pools were driven by themore » observed meteorological forcing. The simulated C storage and residence time were used for analysis. The C storage and residence time were computed globally for all individual soil and plant pools, as well as net primary productivity (NPP) and its allocation to different plant components’ based on these models. Remotely sensed NPP and statistically derived HWSD, and GLC2000 datasets were used as a reference to evaluate the performance of these models. Results showed that CABLE exhibited better agreement with referenced C storage and residence time for plant and soil pools, as compared with CLM-CASA and CLM4. CABLE had longer bulk residence time for soil C pools and stored more C in roots, whereas, CLM-CASA and CLM4 stored more C in woody pools due to differential NPP allocation. Overall, these results indicate that the differences in C storage and residence times in three models are largely due to the differences in their fundamental structures (number of C pools), NPP allocation and C transfer rates. Our results have implications in model development and provide a general framework to explain the bias/uncertainties in simulation of C storage and residence times from the perspectives of model structures.« less

How agricultural management shapes soil microbial communities: patterns emerging from genetic and genomic studies

NASA Astrophysics Data System (ADS)

Daly, Amanda; Grandy, A. Stuart

2016-04-01

Agriculture is a predominant land use and thus a large influence on global carbon (C) and nitrogen (N) balances, climate, and human health. If we are to produce food, fiber, and fuel sustainably we must maximize agricultural yield while minimizing negative environmental consequences, goals towards which we have made great strides through agronomic advances. However, most agronomic strategies have been designed with a view of soil as a black box, largely ignoring the way management is mediated by soil biota. Because soil microbes play a central role in many of the processes that deliver nutrients to crops and support their health and productivity, agricultural management strategies targeted to exploit or support microbial activity should deliver additional benefits. To do this we must determine how microbial community structure and function are shaped by agricultural practices, but until recently our characterizations of soil microbial communities in agricultural soils have been largely limited to broad taxonomic classes due to methodological constraints. With advances in high-throughput genetic and genomic sequencing techniques, better taxonomic resolution now enables us to determine how agricultural management affects specific microbes and, in turn, nutrient cycling outcomes. Here we unite findings from published research that includes genetic or genomic data about microbial community structure (e.g. 454, Illumina, clone libraries, qPCR) in soils under agricultural management regimes that differ in type and extent of tillage, cropping selections and rotations, inclusion of cover crops, organic amendments, and/or synthetic fertilizer application. We delineate patterns linking agricultural management to microbial diversity, biomass, C- and N-content, and abundance of microbial taxa; furthermore, where available, we compare patterns in microbial communities to patterns in soil extracellular enzyme activities, catabolic profiles, inorganic nitrogen pools, and nitrogen transforming processes. Where genetic data are scarce, we further inform our observations with data from phosopholipid fatty acid, ribosomal intergenic spacer, (terminal) restriction fragment length polymorphism, and denaturing gradient gel electrophoresis analyses. By summarizing the most current information about microbial community structure under different agricultural management strategies, we hope to jumpstart a dialogue that could ultimately inspire novel - and sustainable - agronomic approaches that work with and through soil microbes.

Seasonal dynamics of CO2 efflux in soils amended with composted and thermally-dried sludge as affected by soil tillage systems in a semi-arid agroecosystem

NASA Astrophysics Data System (ADS)

García-Gil, Juan Carlos; Soler-Rovira, Pedro; López-de-Sa, Esther G.; Polo, Alfredo

2014-05-01

In semi-arid agricultural soils, seasonal dynamic of soil CO2 efflux (SCE) is highly variable. Based on soil respiration measurements the effects of different management systems (moldboard plowing, chisel and no-tillage) and the application of composted sludge (CS) and thermally-dried sewage sludge (TSS) was investigated in a long-term field experiment (28 years) conducted on a sandy-loam soil at the experimental station 'La Higueruela' (40o 03'N, 4o 24'W). Both organic amendments were applied at a rate of 30 Mg ha-1 prior to tillage practices. Unamended soils were used as control for each tillage system. SCE was moderate in late spring (2.2-11.8 μmol CO2 m-2 s-1) when amendments were applied and tillage was performed, markedly decreased in summer (0.4-3.2 μmol CO2 m-2 s-1), following a moderate increase in autumn (3.4-14.1 μmol CO2 m-2 s-1), rising sharply in October (5.6-39.8 μmol CO2 m-2 s-1 ). In winter, SCE was low (0.6-6.5 μmol CO2 m-2 s-1). In general, SCE was greater in chisel and moldboard tilled soils, and in CS and particularly TSS-amended soils, due to the addition of labile C with these amendments, meanwhile no-tillage soils exhibited smaller increases in C efflux throughout the seasons. Soil temperature controlled the seasonal variations of SCE. In summer, when drought occurs, a general decrease of SCE was observed due to a deficit in soil water content. After drought period SCE jumped to high values in response to rain events ('Birch effect') that changed soil moisture conditions. Soil drying in summer and rewetting in autumn may promotes some changes on the structure of soil microbial community, affecting associated metabolic processes, and enhancing a rapid mineralization of water-soluble organic C compounds and/or dead microbial biomass that acts as an energy source for soil microorganisms. To assess the effects of tillage and amendments on SCE, Q10 values were calculated. Data were grouped into three groups according to soil moisture (0.03-0.10 m3m-3, 0-11-0.21 m3m-3, 0.22-0.30 m3m-3). In general, Q10 values were lower at elevated temperatures when soil moisture contents decreased, confirming that SCE is less sensitive to soil temperature during drought periods. Q10 values were higher in moldboard and chisel tilled soils, possibly due to the incorporation of residues into soil and the increase of soil C substrate, meanwhile in no-tillage part of the organic C pools are likely protected from microorganisms by physico-chemical mechanisms. TSS-amended soils exhibited higher Q10 values than CS, pointing that the biochemical lability of the organic C added with amendments exerts an influence on SCE. Acknowledgements: this research was supported by the Spanish CICYT, Project no. CTM2011-25557.

Hurricane Wilma's impact on overall soil elevation and zones within the soil profile in a mangrove forest

USGS Publications Warehouse

Whelan, K.R.T.; Smith, T. J.; Anderson, G.H.; Ouellette, M.L.

2009-01-01

Soil elevation affects tidal inundation period, inundation frequency, and overall hydroperiod, all of which are important ecological factors affecting species recruitment, composition, and survival in wetlands. Hurricanes can dramatically affect a site's soil elevation. We assessed the impact of Hurricane Wilma (2005) on soil elevation at a mangrove forest location along the Shark River in Everglades National Park, Florida, USA. Using multiple depth surface elevation tables (SETs) and marker horizons we measured soil accretion, erosion, and soil elevation. We partitioned the effect of Hurricane Wilma's storm deposit into four constituent soil zones: surface (accretion) zone, shallow zone (0–0.35 m), middle zone (0.35–4 m), and deep zone (4–6 m). We report expansion and contraction of each soil zone. Hurricane Wilma deposited 37.0 (± 3.0 SE) mm of material; however, the absolute soil elevation change was + 42.8 mm due to expansion in the shallow soil zone. One year post-hurricane, the soil profile had lost 10.0 mm in soil elevation, with 8.5 mm of the loss due to erosion. The remaining soil elevation loss was due to compaction from shallow subsidence. We found prolific growth of new fine rootlets (209 ± 34 SE g m−2) in the storm deposited material suggesting that deposits may become more stable in the near future (i.e., erosion rate will decrease). Surficial erosion and belowground processes both played an important role in determining the overall soil elevation. Expansion and contraction in the shallow soil zone may be due to hydrology, and in the middle and bottom soil zones due to shallow subsidence. Findings thus far indicate that soil elevation has made substantial gains compared to site specific relative sea-level rise, but data trends suggest that belowground processes, which differ by soil zone, may come to dominate the long term ecological impact of storm deposit.

Construction on dolomite in south Africa

NASA Astrophysics Data System (ADS)

Wagener, Fritz Von M.; Day, Peter W.

1986-03-01

Damage to structures and loss of life have been more severe on dolomite than on any other geological formation in southern Africa. The subsidence that occurs on dolomitic terrain following development or during dewatering has given dolomite a notorious reputation and engineers and geologists became reluctant to recommend development on the material. This has led to the pioneering of founding methods for a wide variety of structures aimed at reducing the risk of severity of damage due to subsidence settlement Structures successfully founded on dolomitic terrane include residential and industrial buildings, gold mine reduction works and shaft structures, tailings dams, water retaining structures, and road and rail links. In this article, various methods of construction, some ot which were developed by the authors, are presented. It commences with a classification of a dolomite site in terms of overburden thickness followed by a discussion of the relevant construction methods The methods include mattresses of compacted soil supported by pinnacles or “floating” in residuum, deep foundations such as caissons, the use of specialized piling techniques, and soil improvement by dynamic consolidation

Soil temperature extrema recovery rates after precipitation cooling

NASA Technical Reports Server (NTRS)

Welker, J. E.

1984-01-01

From a one dimensional view of temperature alone variations at the Earth's surface manifest themselves in two cyclic patterns of diurnal and annual periods, due principally to the effects of diurnal and seasonal changes in solar heating as well as gains and losses of available moisture. Beside these two well known cyclic patterns, a third cycle has been identified which occurs in values of diurnal maxima and minima soil temperature extrema at 10 cm depth usually over a mesoscale period of roughly 3 to 14 days. This mesoscale period cycle starts with precipitation cooling of soil and is followed by a power curve temperature recovery. The temperature recovery clearly depends on solar heating of the soil with an increased soil moisture content from precipitation combined with evaporation cooling at soil temperatures lowered by precipitation cooling, but is quite regular and universal for vastly different geographical locations, and soil types and structures. The regularity of the power curve recovery allows a predictive model approach over the recovery period. Multivariable linear regression models alloy predictions of both the power of the temperature recovery curve as well as the total temperature recovery amplitude of the mesoscale temperature recovery, from data available one day after the temperature recovery begins.

Bacterial community characterization in the soils of native and restored rainforest fragments.

PubMed

Vasconcellos, Rafael L F; Zucchi, Tiago D; Taketani, Rodrigo G; Andreote, Fernando D; Cardoso, Elke J B N

2014-11-01

The Brazilian Atlantic Forest ("Mata Atlântica") has been largely studied due to its valuable and unique biodiversity. Unfortunately, this priceless ecosystem has been widely deforested and only 10 % of its original area is still untouched. Some projects have been successfully implemented to restore its fauna and flora but there is a lack of information on how the soil bacterial communities respond to this process. Thus, our aim was to evaluate the influence of soil attributes and seasonality on soil bacterial communities of rainforest fragments under restoration processes. Soil samples from a native site and two ongoing restoration fragments with different times of implementation (10 and 20 years) were collected and assayed by using culture-independent approaches. Our findings demonstrate that seasonality barely altered the bacterial distribution whereas soil chemical attributes and plant species were related to bacterial community structure during the restoration process. Moreover, the strict relationship observed for two bacterial groups, Solibacteriaceae and Verrucomicrobia, increasing from the more recently planted (10 years) to the native site, with the 20 year old restoration site in the middle, which may suggest their use as bioindicators of soil quality and recovery of forest fragments being restored.

Investigating Forest Soil Disturbance with Different Timber Harvesting Operations in South Korea

NASA Astrophysics Data System (ADS)

Im, Sangjun; Lee, Eunjai; Eu, Song; Han, Sang-Kyun

2017-04-01

Forest operation such as timber harvesting can influence to forest environment by displacing soil particles, compacting surface layers, and destroying soil structures. This results in increased surface runoff and associated soil erosion during rainy season, due to soil disturbance. The extent of soil disturbance depends on the skidding/yarding method, types of machine used, and soil types. In South Korea, cut-to-length (CTL) operation is traditionally used by excavator with grapple in most areas. Recently, whole-tree (WT) harvesting system by swing yarder has gained considerable attention as an alternative traditional extraction method. The objectives of this study were to describe the effects of two different harvesting methods (CTL and WT) on soil disturbance and soil physical properties. After the CTL observation, we found that severe disturbed soils and compacted area were more than WT. Rutting was influenced more than 50% of the deep disturbance classes by the uphill climbing and downhill extraction method, while exposing bare soil was most disturbance in WT operation. Soil physical properties were influenced considerably by the number of excavator passes and slash residual classes in both units. The results from the study would be useful for understanding soil disturbance influence by timber harvesting in Korea. But, more detailed observations are needed to accurately estimate erosion rates and sediment delivery associated with forest management and operation. Acknowledgements. This study was carried out with the support of 'R&D Program for Forestry Technology (Project No. S211316L020110)' provided by Korea Forest Service.

Application of Bioorganic Fertilizer Significantly Increased Apple Yields and Shaped Bacterial Community Structure in Orchard Soil.

PubMed

Wang, Lei; Li, Jing; Yang, Fang; E, Yaoyao; Raza, Waseem; Huang, Qiwei; Shen, Qirong

2017-02-01

Application of bioorganic fertilizers has been reported to improve crop yields and change soil bacterial community structure; however, little work has been done in apple orchard soils where the biological properties of the soils are being degraded due to long-term application of chemical fertilizers. In this study, we used Illumina-based sequencing approach to characterize the bacterial community in the 0-60-cm soil profile under different fertilizer regimes in the Loess Plateau. The experiment includes three treatments: (1) control without fertilization (CK); (2) application of chemical fertilizer (CF); and (3) application of bioorganic fertilizer and organic-inorganic mixed fertilizer (BOF). The results showed that the treatment BOF increased the apple yields by 114 and 67 % compared to the CK and CF treatments, respectively. The treatment BOF also increased the soil organic matter (SOM) by 22 and 16 % compared to the CK and CF treatments, respectively. The Illumina-based sequencing showed that Acidobacteria and Proteobacteria were the predominant phyla and Alphaproteobacteria and Gammaproteobacteria were the most abundant classes in the soil profile. The bacterial richness for ACE was increased after the addition of BOF. Compared to CK and CF treatments, BOF-treated soil revealed higher abundance of Proteobacteria, Alphaproteobacteria and Gammaproteobacteria, Rhizobiales, and Xanthomonadales while Acidobacteria, Gp7, Gp17, and Sphaerobacter were found in lower abundance throughout the soil profile. Bacterial community structure varied with soil depth under different fertilizer treatments, e.g., the bacterial richness, diversity, and the relative abundance of Verruccomicrobia, Candidatus Brocadiales, and Skermanella were decreased with the soil depth in all three treatments. Permutational multivariate analysis showed that the fertilizer regime was the major factor than soil depth in the variations of the bacterial community composition. Two groups, Lysobacter and Rhodospirillaceae, were found to be the significantly increased by the BOF addition and the genus Lysobacter may identify members of this group effective in biological control-based plant disease management and the members of family Rhodospirillaceae had an important role in fixing molecular nitrogen. These results strengthen the understanding of responses to the BOF and possible interactions within bacterial communities in soil that can be associated with disease suppression and the accumulation of carbon and nitrogen. The increase of apple yields after the application of BOF might be attributed to the fact that the application of BOF increased SOM, and soil total nitrogen, and changed the bacterial community by enriching Rhodospirillaceae, Alphaprotreobateria, and Proteobacteria.

Improving water content estimation on landslide-prone hillslopes using structurally-constrained inversion of electrical resistivity data

NASA Astrophysics Data System (ADS)

Heinze, Thomas; Möhring, Simon; Budler, Jasmin; Weigand, Maximilian; Kemna, Andreas

2017-04-01

Rainfall-triggered landslides are a latent danger in almost any place of the world. Due to climate change heavy rainfalls might occur more often, increasing the risk of landslides. With pore pressure as mechanical trigger, knowledge of water content distribution in the ground is essential for hazard analysis during monitoring of potentially dangerous rainfall events. Geophysical methods like electrical resistivity tomography (ERT) can be utilized to determine the spatial distribution of water content using established soil physical relationships between bulk electrical resistivity and water content. However, often more dominant electrical contrasts due to lithological structures outplay these hydraulic signatures and blur the results in the inversion process. Additionally, the inversion of ERT data requires further constraints. In the standard Occam inversion method, a smoothness constraint is used, assuming that soil properties change softly in space. This applies in many scenarios, as for example during infiltration of water without a clear saturation front. Sharp lithological layers with strongly divergent hydrological parameters, as often found in landslide prone hillslopes, on the other hand, are typically badly resolved by standard ERT. We use a structurally constrained ERT inversion approach for improving water content estimation in landslide prone hills by including a-priori information about lithological layers. Here the standard smoothness constraint is reduced along layer boundaries identified using seismic data or other additional sources. This approach significantly improves water content estimations, because in landslide prone hills often a layer of rather high hydraulic conductivity is followed by a hydraulic barrier like clay-rich soil, causing higher pore pressures. One saturated layer and one almost drained layer typically result also in a sharp contrast in electrical resistivity, assuming that surface conductivity of the soil does not change in similar order. Using synthetic data, we study the influence of uncertainties in the a-priori information on the inverted resistivity and estimated water content distribution. Based on our simulation results, we provide best-practice recommendations for field applications and suggest important tests to obtain reliable, reproducible and trustworthy results. We finally apply our findings to field data, compare conventional and improved analysis results, and discuss limitations of the structurally-constrained inversion approach.

Self-organization, preferential flow and rainfall runoff behavior - is there a connection?

NASA Astrophysics Data System (ADS)

Zehe, Erwin; Blume, Theresa; Kleidon, Axel; Ehret, Uwe; Scherer, Ulrike; Westhoff, Martijn

2013-04-01

In line with the studies of Kleidon et al. (2012) and Zehe et al. (2010) the proposed study analyzes mass flow related flows of free energy in open hydrological systems - hillslopes and small catchments - using thermodynamics methods. Why a thermodynamic treatment? A small part of the kinetic energy input from incoming rainfall is dissipated into heat and to break up soil aggregates. Depending on the partitioning of the incoming rainfall into overland flow and soil water, the remaining part of the incoming kinetic energy is partly transformed into potential energy of surface water and subsequently partly exported as kinetic energy of overland flow from the system; the rest is dissipated by frictional losses. The other part of rainfall infiltrates thereby increasing potential energy of soil water but depleting at the same time (gradients in) capillary binding energy of soil water, which again comprises energy dissipation into heat of immersion. Although, these mass fluxes are not associated with large heat fluxes, they reflect the overall conservation of energy as well as the second law of thermodynamics. They require thus a thermodynamic treatment, because tiny amounts of kinetic energy, surface energy and potential energy are dissipated into heat: this implies irreversibility and explains why water does not flow uphill. Soil hydraulic equilibrium (HE), arising from a balance in potential and capillary binding energy in soil, can be interpreted as a state of maximum entropy in soil. Soil water potential, defined as sum of matric potential and gravity potential, is in HE equal to zero along the soil profile. This corresponds to a state of maximum entropy due to a zero potential gradient, which implies due to Zehe et al. (2010) a state of minimum (Helmholtz) free energy. Our first main objective is to quantify to which extent connected preferential flow path, in our case vertical macropores and the river network enhance flow velocities at a given driving gradient and thus power in the associated mass fluxes. This implies either an enhanced export of free energy in form of kinetic energy in case of the river net, or an accelerated reduction of potential energy of infiltrating surface water which implies a reduction free energy in form of capillary binding energy of soil water. We hypothesize (H1) that network like structures act as dissipative structures "serving the purpose" of reducing the relaxation time to a state of lower "free" energy in the entire system. This is because they minimize dissipative losses of kinetic energy along their extent. This faster relaxation towards a state of smaller free energy is deemed to be favorable for mechanic stability of the entire hydrological system because a) mass flows perform due to the enhanced export of kinetic energy less work on the system itself and b) mechanical stress from ponded surface water is quickly reduced by fast infiltration and preferential flow. Our second main objective is, in line with the study of Zehe et al. (2010), the search for thermodynamic optimal hillslope architectures both with respect to the surface density of vertical macropores in soil and with respect to the spatial arrangement of soil types and macropores at the hillslope scale. In line with H1 we suggest (H2) that a hydro-geo-ecosystem is closer to a functional optimum than other possible configurations if it dissipates and exports more of the kinetic energy input from incoming rainfall by redistributing water against internal gradients and exporting water against macroscale geo-potential gradients. Note that H2 does not postulate that functionally optimal hillslope architectures necessarily exist, if they exist H2 implies however that they maximize entropy production and thus reduction of total free energy of the system at a "wisely" selected time scale. The surface density of apparent macropores does for instance control the tradeoff between Hortonian overland flow formation and infiltration, which implies a tradeoff between the amount of kinetic energy input from rainfall that is converted in to power associated with overland flow and power associated with soil water flows depleting gradients in soil water potential. Does this tradeoff imply an optimum surface density of macropores at the hillslope scale in the sense that power in soil water flow is maximized or reduction of free energy is maximized? In case such an optimum hillslope architecture existed, and in case that the evolution of the hydrological systems of interested was indeed in accordance with hypothesis H2, this optimal architecture should allow an acceptable uncalibrated simulation of the systems rainfall -runoff behavior (if the selected model structure can properly represent this architecture). We will address these questions and test the main implications of our hypotheses by means of numerical experiments with the physically based hydrological model CATFLOW. We use behavioral model structures as basic model setup, which have been shown to closely portray system behavior and its architecture in a sense that they reproduce distributed observations of soil moisture and catchment scale discharge and represent the observed structural and textural signatures of soils, flow networks and vegetation. Our test areas are the Weiherbach (Germany) and the Malalcahuello research headwaters (Chile), which are located in distinctly different hydro-climatic and hydro-pedological settings. Within the numerical experiments we will simulate the full concert of hydrological processes at the hillslope and headwater scales for meaningful perturbations of the behavioral model structure and compare them with respect to dynamics of free energy and production of power. These perturbations affect a) the river network and the geomorphology of the Weiherbach catchment, b) surface density of macropores in both catchments c) the spatial arrangement of soils and preferential pathways at the hillslope scale in the Weiherbach catchment. References: Kleidon, A., Zehe, E., Ehret, U., and Scherer, U.: Thermodynamics, maximum power, and the dynamics of preferential river flow structures on continents, Hydrol. Earth Syst. Sci. Discuss., 9, 7317-7378, 10.5194/hessd-9-7317-2012, 2012. Zehe, E., Blume, T., and Blöschl, G.: The principle of 'maximum energy dissipation': a novel thermodynamic perspective on rapid water flow in connected soil structures, Phil. Trans. R. Soc. B, 1-10, doi:10.1098/rstb.2009.0308, 2010.

Effect of Humic Acids and pesticides on Agricultural Soil Structure and Stability and Its Implication on Soil Quality

NASA Astrophysics Data System (ADS)

Gaonkar, O. D.; Nambi, I. M.; G, S. K.

2016-12-01

The functional and morphological aspects of soil structure determine the soil quality. The dispersion of colloidal soil particles, especially the clay fraction and rupture of soil aggregates, both of which play an important role in soil structure development, lead to degradation of soil quality. The main objective of this work was to determine the effect of behaviour of soil colloids on the agricultural soil structure and quality. The effect of commercial humic acid, organophosphate pesticides and soil natural organic matter on the electrical and structural properties of the soil colloids was also studied. Agricultural soil, belonging to the sandy loam texture class from northern part of India was considered in this study. In order to understand the changes in the soil quality in the presence and absence of humic acids, the soil fabric and structure was analyzed by X-ray diffraction (XRD), Fourier Transform Infrared (FTIR) Spectroscopy and Scanning Electron Microscopy (SEM). Electrical properties of natural soil colloids in aqueous suspensions were assessed by zeta potential measurements at varying pH values with and without the presence of humic acids and pesticides. The influence of natural organic matter was analyzed by oxidizing the natural soil organic matter with hydrogen peroxide. The zeta potential of the soil colloids was found to be negative in the pH range studied. The results indicated that hydrogen peroxide treatment lead to deflocculation of colloidal soil particles. In addition, the humic acids undergoes effective adsorption onto the soil surface imparting more negative zeta potential to the colloidal soil particles. The soil hydrophilicity decreased in the presence of humic acids which was confirmed by surface free energy determination. Thus, it can be concluded that the presence of humic acids altered the soil fabric and structure, thereby affecting the soil quality. This study assumes significance in understanding the soil aggregation and the interactions at soil solid-liquid interface.

Windthrow and fallow-forest successions impacts in soil carbon stocks and GHG fluxes spatial variability and dynamics in the Central Russia' reserve spruce ecosystems

NASA Astrophysics Data System (ADS)

Vasenev, Ivan; Ivanov, Alexey; Komarova, Tatyana; Valentini, Riccardo

2015-04-01

High spatial and temporal variability is mutual feature for most forest soils that is especially obvious in case of their carbon stocks and GHG fluxes. This phenomenon is generally well-known but not so often becomes the object of special precision investigation in detail and small scales so there are still serious gaps in its principal factors understanding due to their high bioclimatic, regional, landscape, tree species and temporal variability. Southern taiga is one of the most environmentally important world zonal forest ecosystems due to its still comparatively intensive carbon biogeochemical cycle and huge area in the northern Eurasia with strong anthropogenic impacts by Western & Central European and Southern & Eastern Asian regions. Central Forest Biospheric Reserve (Tver region, 360 km to North-West from Moscow) is the principal southern-taiga reserve in the European territory of Russia. Since start of its research activity in 1939 the reserve became the regional center of mature spruce ecosystem structure and dynamics investigation. In 1970-1980-s there have been done complex investigations of windthrow soil patterns and fallow-forest successions. Since middle of 1990-s the ecosystem-level GHG fluxes have been observed by eddy covariance method. Since 2012 the detailed year-round monitoring is running in the southern-taiga zonal station of the regional system RusFluxNet with especial attention on the soil carbon stocks and GHG fluxes spatial variability and dynamics due to windthrow and fallow-forest successions (in frame of RF Governmental projects #11.G34.31.0079 and #14.120.14.4266). Soil carbon dynamics is investigated in decades-hundred-year chronosequences of dominated parcels and different-size windthrow soil cover patterns, including direct investigation during last 33 years with detailed mapping, soil profile morphometrics and bulk density, morphogenetic and statistical analysis of mass data. Morphogenetic analysis of microrelief, soil profile and cover have been accompanied by researches of soil regimes (temperature, moisture, pH, oxidation-reduction potential, microbiological activity) and transformations of representative topsoil materials at the different stages of windthrow soil successions. Since 2012 soil CO2 fluxes have been analyzed every ten days in situ by method of exposition chambers with infra red gas analyzer (Li-Cor 820). At the same periods soil gas fluxes have been sampled from the exposition chambers into vials with the following CH4 and N2O analysis by gas chromatograph. The carried out researches have shown sharp increase of rates of typomorphic soil forming processes within windthrow hole and mound soil successions: (a) lateral input of organic matter in soils of fresh holes - up to 2-3 kg m-2y-1; (b) fulvic acid formation - up to 100-200 g m-2y-1 in soils of young holes and mounds; (c) Al-Fe-humus migration - up to 0.7-1.2 kg cm m-2y-1; (d) humus-accumulated and eluvial horizon development - up to 1-2 mm y-1. The conducted researches have shown high temporal and spatial variability of CO2 fluxes due to soil cover and windthrow complex patterns, windthrow or fallow-forest succession stage and age, air and soil temperature (up to R = 0.64 for taiga, and R = 0.75 for fallow), soil moisture (up to R = -0.65/0.66 both for taiga and fallow) and some other characteristics of the studied objects. Soil CO2 emission is essentially decreased with fallow-forest age. Maximum CO2 fluxes have been observed between 12:00 and 16:00. Within fallow-forest succession the maximum CH4 emission has been fixed in first (grass) stage, and N2O fluxes increase due to temperature rise and moisture decreasing. Usually there is stronger effect on GHG fluxes by air temperature than soil one due to comparatively thin layer of soil organic and/or humus-accumulative subhorizons with maximum biological activity that usually determines the total rate of GHG principal soil fluxes. Unfavorable seasonal climatic conditions (dry season or low temperature) determine essential (in 1.5-2 times) decreasing not only in soil GHG fluxes but in level of their spatial variability, seasonal and daily dynamics too. These trends are most obvious in case of more open ecosystems at the first stages of the fallow-forest succession. Understanding the principal regularities of spatial and temporal changes in soil GHG fluxes help better modelling them in the process of spatial intra- and extrapolations, seasonal and interseasonal predictions, taking into attention basic and current principal factors limiting GHG fluxes.

Decomposer food web in a deciduous forest shows high share of generalist microorganisms and importance of microbial biomass recycling.

PubMed

López-Mondéjar, Ruben; Brabcová, Vendula; Štursová, Martina; Davidová, Anna; Jansa, Jan; Cajthaml, Tomaš; Baldrian, Petr

2018-06-01

Forest soils represent important terrestrial carbon (C) pools where C is primarily fixed in the plant-derived biomass but it flows further through the biomass of fungi and bacteria before it is lost from the ecosystem as CO 2 or immobilized in recalcitrant organic matter. Microorganisms are the main drivers of C flow in forests and play critical roles in the C balance through the decomposition of dead biomass of different origins. Here, we track the path of C that enters forest soil by following respiration, microbial biomass production, and C accumulation by individual microbial taxa in soil microcosms upon the addition of 13 C-labeled biomass of plant, fungal, and bacterial origin. We demonstrate that both fungi and bacteria are involved in the assimilation and mineralization of C from the major complex sources existing in soil. Decomposer fungi are, however, better suited to utilize plant biomass compounds, whereas the ability to utilize fungal and bacterial biomass is more frequent among bacteria. Due to the ability of microorganisms to recycle microbial biomass, we suggest that the decomposer food web in forest soil displays a network structure with loops between and within individual pools. These results question the present paradigms describing food webs as hierarchical structures with unidirectional flow of C and assumptions about the dominance of fungi in the decomposition of complex organic matter.

Modeling the effect of soil structure on water flow and isoproturon dynamics in an agricultural field receiving repeated urban waste compost application.

PubMed

Filipović, Vilim; Coquet, Yves; Pot, Valérie; Houot, Sabine; Benoit, Pierre

2014-11-15

Transport processes in soils are strongly affected by heterogeneity of soil hydraulic properties. Tillage practices and compost amendments can modify soil structure and create heterogeneity at the local scale within agricultural fields. The long-term field experiment QualiAgro (INRA-Veolia partnership 1998-2013) explores the impact of heterogeneity in soil structure created by tillage practices and compost application on transport processes. A modeling study was performed to evaluate how the presence of heterogeneity due to soil tillage and compost application affects water flow and pesticide dynamics in soil during a long-term period. The study was done on a plot receiving a co-compost of green wastes and sewage sludge (SGW) applied once every 2 years since 1998. The plot was cultivated with a biannual rotation of winter wheat-maize (except 1 year of barley) and a four-furrow moldboard plow was used for tillage. In each plot, wick lysimeter outflow and TDR probe data were collected at different depths from 2004, while tensiometer measurements were also conducted during 2007/2008. Isoproturon concentration was measured in lysimeter outflow since 2004. Detailed profile description was used to locate different soil structures in the profile, which was then implemented in the HYDRUS-2D model. Four zones were identified in the plowed layer: compacted clods with no visible macropores (Δ), non-compacted soil with visible macroporosity (Γ), interfurrows created by moldboard plowing containing crop residues and applied compost (IF), and the plow pan (PP) created by plowing repeatedly to the same depth. Isoproturon retention and degradation parameters were estimated from laboratory batch sorption and incubation experiments, respectively, for each structure independently. Water retention parameters were estimated from pressure plate laboratory measurements and hydraulic conductivity parameters were obtained from field tension infiltrometer experiments. Soil hydraulic properties were optimized on one calibration year (2007/08) using pressure head, water content and lysimeter outflow data, and then tested on the whole 2004/2010 period. Lysimeter outflow and water content dynamics in the soil profile were correctly described for the whole period (model efficiency coefficient: 0.99) after some correction of LAI estimates for wheat (2005/06) and barley (2006/07). Using laboratory-measured degradation rates and assuming degradation only in the liquid phase caused large overestimation of simulated isoproturon losses in lysimeter outflow. A proper order of magnitude of isoproturon losses was obtained after considering that degradation occurred in solid (sorbed) phase at a rate 75% of that in liquid phase. Isoproturon concentrations were found to be highly sensitive to degradation rates. Neither the laboratory-measured isoproturon fate parameters nor the independently-derived soil hydraulic parameters could describe the actual multiannual field dynamics of water and isoproturon without calibration. However, once calibrated on a limited period of time (9 months), HYDRUS-2D was able to simulate the whole 6-year time series with good accuracy. Copyright © 2014 Elsevier B.V. All rights reserved.

Capping hazardous red mud using acidic soil with an embedded layer of zeolite for plant growth.

PubMed

Ma, Yingqun; Si, Chunhua; Lin, Chuxia

2014-01-01

A nearly three-year microcosm experiment was conducted to test the effectiveness of capping red mud using acidic soil with an embedded layer of zeolite in sustaining the growth of a grass species. This 'sandwich-structured' design allowed self-sustaining growth of the plants under rain-fed conditions no matter whether the underlying red mud was neutralized or not. During the initial stage, the plants grew better when the red mud was not neutralized with MgCl2 probably due to pH rise in the root zone. Neutralization of red mud led to salinization and pH decrease in the root zone. However, the difference in plant growth performance between these scenarios became less remarkable over time due to gradual improvement of soil conditions in the neutralized scenarios. Continuous leaching of soluble salts and alkali by rainwater extended the root zone to the red mud layer. As a result of vegetative production, soil organic matter rapidly accumulated. This, combined with increase in pH and decrease in salinity, markedly facilitated microbial activities and consequently improved the supply of nutrients. This study provides abasis for field-scale experimental design that will have implications for effectively establishing vegetative cover in red mud disposal sites to control dust hazards.

Isolation of a significant fraction of non-phototroph diversity from a desert Biological Soil Crust

DOE PAGES

Nunes da Rocha, Ulisses; Cadillo-Quiroz, Hinsby; Karaoz, Ulas; ...

2015-04-14

Biological Soil Crusts (BSCs) are organosedimentary assemblages comprised of microbes and minerals in topsoil of terrestrial environments. BSCs strongly impact soil quality in dryland ecosystems (e.g., soil structure and nutrient yields) due to pioneer species such as Microcoleus vaginatus; phototrophs that produce filaments that bind the soil together, and support an array of heterotrophic microorganisms. These microorganisms in turn contribute to soil stability and biogeochemistry of BSCs. Non-cyanobacterial populations of BSCs are less well known than cyanobacterial populations. Therefore, we attempted to isolate a broad range of numerically significant and phylogenetically representative BSC aerobic heterotrophs. Combining simple pre-treatments (hydration ofmore » BSCs under dark and light) and isolation strategies (media with varying nutrient availability and protection from oxidative stress) we recovered 402 bacterial and one fungal isolate in axenic culture, which comprised 116 phylotypes (at 97% 16S rRNA gene sequence homology), 115 bacterial and one fungal. Each medium enriched a mostly distinct subset of phylotypes, and cultivated phylotypes varied due to the BSC pre-treatment. The fraction of the total phylotype diversity isolated, weighted by relative abundance in the community, was determined by the overlap between isolate sequences and OTUs reconstructed from metagenome or metatranscriptome reads. Together, more than 8% of relative abundance of OTUs in the metagenome was represented by our isolates, a cultivation efficiency much larger than typically expected from most soils. We conclude that simple cultivation procedures combined with specific pre-treatment of samples afford a significant reduction in the culturability gap, enabling physiological and metabolic assays that rely on ecologically relevant axenic cultures.« less

Variation in woody plant mortality and dieback from severe drought among soils, plant groups, and species within a northern Arizona ecotone.

PubMed

Koepke, Dan F; Kolb, Thomas E; Adams, Henry D

2010-08-01

Vegetation change from drought-induced mortality can alter ecosystem community structure, biodiversity, and services. Although drought-induced mortality of woody plants has increased globally with recent warming, influences of soil type, tree and shrub groups, and species are poorly understood. Following the severe 2002 drought in northern Arizona, we surveyed woody plant mortality and canopy dieback of live trees and shrubs at the forest-woodland ecotone on soils derived from three soil parent materials (cinder, flow basalt, sedimentary) that differed in texture and rockiness. Our first of three major findings was that soil parent material had little effect on mortality of both trees and shrubs, yet canopy dieback of trees was influenced by parent material; dieback was highest on the cinder for pinyon pine (Pinus edulis) and one-seed juniper (Juniperus monosperma). Ponderosa pine (Pinus ponderosa) dieback was not sensitive to parent material. Second, shrubs had similar mortality, but greater canopy dieback, than trees. Third, pinyon and ponderosa pines had greater mortality than juniper, yet juniper had greater dieback, reflecting different hydraulic characteristics among these tree species. Our results show that impacts of severe drought on woody plants differed among tree species and tree and shrub groups, and such impacts were widespread over different soils in the southwestern U.S. Increasing frequency of severe drought with climate warming will likely cause similar mortality to trees and shrubs over major soil types at the forest-woodland ecotone in this region, but due to greater mortality of other tree species, tree cover will shift from a mixture of species to dominance by junipers and shrubs. Surviving junipers and shrubs will also likely have diminished leaf area due to canopy dieback.

Intensified Vegetation Water Use due to Soil Calcium Leaching under Acid Deposition

NASA Astrophysics Data System (ADS)

Lanning, M.; Wang, L.; Scanlon, T. M.; Vadeboncoeur, M. A.; Adams, M. B.; Epstein, H. E.; Druckenbrod, D.

2017-12-01

Despite the important role vegetation plays in the global water cycle, the exact controls of vegetation water use, especially the role of soil biogeochemistry, remain elusive. Nitrate and sulfate deposition from fossil fuel burning has caused significant soil acidification, leading to the leaching of soil base cations. From a physiological perspective, plants require various soil cations as signaling and regulatory ions as well as integral parts of structural molecules; a depletion of soil cations can cause reduced productivity and abnormal responses to environmental change. A deficiency in calcium could also potentially prolong stomatal opening, leading to increased transpiration until enough calcium had been acquired to stimulate stomatal closure. Based on the plant physiology and the nature of acidic deposition, we hypothesize that depletion of the soil calcium supply, induced by acid deposition, would intensify vegetation water use at the watershed scale. We tested this hypothesis by analyzing a long-term and unique data set (1989-2012) of soil lysimeter data along with stream flow and evapotranspiration data at the Fernow Experimental Forest. We show that depletion of soil calcium by acid deposition can intensify vegetation water use ( 10% increase in evapotranspiration and depletion in soil water) for the first time. These results are critical to understanding future water availability, biogeochemical cycles, and surficial energy flux and may help reduce uncertainties in terrestrial biosphere models.

Effect of rice straw application on microbial community and activity in paddy soil under different water status.

PubMed

Pan, Fuxia; Li, Yaying; Chapman, Stephen James; Yao, Huaiying

2016-03-01

Rice straw application and flooding are common practices in rice production, both of which can induce changes in the microbial community. This study used soil microcosms to investigate the impact of water status (saturated and nonsaturated) and straw application (10 g kg(-1) soil) on soil microbial composition (phospholipid fatty acid analysis) and activity (MicroResp(™) method). Straw application significantly increased total PLFA amount and individual PLFA components independent of soil moisture level. The amount of soil fungal PLFA was less than Gram-negative, Gram-positive, and actinomycete PLFA, except the drained treatment with rice straw application, which had higher fungal PLFA than actinomycete PLFA at the initial incubation stage. Straw amendment and waterlogging had different effects on microbial community structure and substrate-induced pattern. PLFA profiles were primarily influenced by straw application, whereas soil water status had the greater influence on microbial respiration. Of the variation in PLFA and respiration data, straw accounted for 30.1 and 16.7 %, while soil water status explained 7.5 and 29.1 %, respectively. Our results suggest that (1) the size of microbial communities in paddy soil is more limited by carbon substrate availability rather than by the anaerobic conditions due to waterlogging and (2) that soil water status is more important as a control of fungal growth and microbial community activity.

Hydrologic responses to restored wildfire regimes revealed by soil moisture-vegetation relationships

NASA Astrophysics Data System (ADS)

Boisramé, Gabrielle; Thompson, Sally; Stephens, Scott

2018-02-01

Many forested mountain watersheds worldwide evolved with frequent fire, which Twentieth Century fire suppression activities eliminated, resulting in unnaturally dense forests with high water demand. Restoration of pre-suppression forest composition and structure through a variety of management activities could improve forest resilience and water yields. This study explores the potential for "managed wildfire", whereby naturally ignited fires are allowed to burn, to alter the water balance. Interest in this type of managed wildfire is increasing, yet its long-term effects on water balance are uncertain. We use soil moisture as a spatially-distributed hydrologic indicator to assess the influence of vegetation, fire history and landscape position on water availability in the Illilouette Creek Basin in Yosemite National Park. Over 6000 manual surface soil moisture measurements were made over a period of three years, and supplemented with continuous soil moisture measurements over the top 1m of soil in three sites. Random forest and linear mixed effects models showed a dominant effect of vegetation type and history of vegetation change on measured soil moisture. Contemporary and historical vegetation maps were used to upscale the soil moisture observations to the basin and infer soil moisture under fire-suppressed conditions. Little change in basin-averaged soil moisture was inferred due to managed wildfire, but the results indicated that large localized increases in soil moisture had occurred, which could have important impacts on local ecology or downstream flows.

Can the soil fauna of boreal forests recover from lead-derived stress in a shooting range area?

PubMed

Selonen, Salla; Liiri, Mira; Setälä, Heikki

2014-04-01

The responses of soil faunal communities to lead (Pb) contamination in a shooting range area and the recovery of these fauna after range abandonment were studied by comparing the communities at an active shotgun shooting range, an abandoned shooting range, and a control site, locating in the same forest. Despite the similar overall Pb pellet load at the shooting ranges, reaching up to 4 kg m(-2), Pb concentrations in the top soil of the abandoned range has decreased due to the accumulation of detritus on the soil surface. As a consequence, soil animal communities were shown to recover from Pb-related disturbances by utilizing the less contaminated soil layer. Microarthropods showed the clearest signs of recovery, their numbers and community composition being close to those detected at the control site. However, in the deepest organic soil layer, the negative effects of Pb were more pronounced at the abandoned than at the active shooting range, which was detected as altered microarthropod and nematode community structures, reduced abundances of several microarthropod taxa, and the total absence of enchytraeid worms. Thus, although the accumulation of fresh litter on soil surface can promote the recovery of decomposer communities in the top soil, the gradual release of Pb from corroding pellets may pose a long-lasting risk for decomposer taxa deeper in the soil.

Nutrient leaching, soil pH and changes in microbial community increase with time in lead-contaminated boreal forest soil at a shooting range area.

PubMed

Selonen, Salla; Setälä, Heikki

2017-02-01

Despite the known toxicity of lead (Pb), Pb pellets are widely used at shotgun shooting ranges over the world. However, the impacts of Pb on soil nutrients and soil microbes, playing a crucial role in nutrient cycling, are poorly understood. Furthermore, it is unknown whether these impacts change with time after the cessation of shooting. To shed light on these issues, three study sites in the same coniferous forest in a shooting range area were studied: an uncontaminated control site and an active and an abandoned shooting range, both sharing a similar Pb pellet load in the soil, but the latter with a 20-year longer contamination history. Soil pH and nitrate concentration increased, whilst soil phosphate concentration and fungal phospholipid fatty acid (PLFA) decreased due to Pb contamination. Our results imply that shooting-derived Pb can influence soil nutrients and microbes not only directly but also indirectly by increasing soil pH. However, these mechanisms cannot be differentiated here. Many of the Pb-induced changes were most pronounced at the abandoned range, and nutrient leaching was increased only at that site. These results suggest that Pb disturbs the structure and functions of the soil system and impairs a crucial ecosystem service, the ability to retain nutrients. Furthermore, the risks of shooting-derived Pb to the environment increase with time.

Elevational Variation in Soil Amino Acid and Inorganic Nitrogen Concentrations in Taibai Mountain, China.

PubMed

Cao, Xiaochuang; Ma, Qingxu; Zhong, Chu; Yang, Xin; Zhu, Lianfeng; Zhang, Junhua; Jin, Qianyu; Wu, Lianghuan

2016-01-01

Amino acids are important sources of soil organic nitrogen (N), which is essential for plant nutrition, but detailed information about which amino acids predominant and whether amino acid composition varies with elevation is lacking. In this study, we hypothesized that the concentrations of amino acids in soil would increase and their composition would vary along the elevational gradient of Taibai Mountain, as plant-derived organic matter accumulated and N mineralization and microbial immobilization of amino acids slowed with reduced soil temperature. Results showed that the concentrations of soil extractable total N, extractable organic N and amino acids significantly increased with elevation due to the accumulation of soil organic matter and the greater N content. Soil extractable organic N concentration was significantly greater than that of the extractable inorganic N (NO3--N + NH4+-N). On average, soil adsorbed amino acid concentration was approximately 5-fold greater than that of the free amino acids, which indicates that adsorbed amino acids extracted with the strong salt solution likely represent a potential source for the replenishment of free amino acids. We found no appreciable evidence to suggest that amino acids with simple molecular structure were dominant at low elevations, whereas amino acids with high molecular weight and complex aromatic structure dominated the high elevations. Across the elevational gradient, the amino acid pool was dominated by alanine, aspartic acid, glycine, glutamic acid, histidine, serine and threonine. These seven amino acids accounted for approximately 68.9% of the total hydrolyzable amino acid pool. The proportions of isoleucine, tyrosine and methionine varied with elevation, while soil major amino acid composition (including alanine, arginine, aspartic acid, glycine, histidine, leucine, phenylalanine, serine, threonine and valine) did not vary appreciably with elevation (p>0.10). The compositional similarity of many amino acids across the elevational gradient suggests that soil amino acids likely originate from a common source or through similar biochemical processes.

Elevational Variation in Soil Amino Acid and Inorganic Nitrogen Concentrations in Taibai Mountain, China

PubMed Central

Yang, Xin; Zhu, Lianfeng; Zhang, Junhua; Jin, Qianyu; Wu, Lianghuan

2016-01-01

Amino acids are important sources of soil organic nitrogen (N), which is essential for plant nutrition, but detailed information about which amino acids predominant and whether amino acid composition varies with elevation is lacking. In this study, we hypothesized that the concentrations of amino acids in soil would increase and their composition would vary along the elevational gradient of Taibai Mountain, as plant-derived organic matter accumulated and N mineralization and microbial immobilization of amino acids slowed with reduced soil temperature. Results showed that the concentrations of soil extractable total N, extractable organic N and amino acids significantly increased with elevation due to the accumulation of soil organic matter and the greater N content. Soil extractable organic N concentration was significantly greater than that of the extractable inorganic N (NO3−-N + NH4+-N). On average, soil adsorbed amino acid concentration was approximately 5-fold greater than that of the free amino acids, which indicates that adsorbed amino acids extracted with the strong salt solution likely represent a potential source for the replenishment of free amino acids. We found no appreciable evidence to suggest that amino acids with simple molecular structure were dominant at low elevations, whereas amino acids with high molecular weight and complex aromatic structure dominated the high elevations. Across the elevational gradient, the amino acid pool was dominated by alanine, aspartic acid, glycine, glutamic acid, histidine, serine and threonine. These seven amino acids accounted for approximately 68.9% of the total hydrolyzable amino acid pool. The proportions of isoleucine, tyrosine and methionine varied with elevation, while soil major amino acid composition (including alanine, arginine, aspartic acid, glycine, histidine, leucine, phenylalanine, serine, threonine and valine) did not vary appreciably with elevation (p>0.10). The compositional similarity of many amino acids across the elevational gradient suggests that soil amino acids likely originate from a common source or through similar biochemical processes. PMID:27337100

Effect of mineralogical, geochemical and biological properties on soils reflectance to assess temporal and spatial dynamics of BSCs in Sahelian ecosystems

NASA Astrophysics Data System (ADS)

Bourguignon, A.; Cerdan, O.; Desprats, J. F.; Marin, B.; Malam Issa, O.; Valentin, C.; Rajot, J. L.

2012-04-01

Land degradation and desertification are among the major environmental problems, resulting in reduced productivity and development of bare surfaces in arid and semi-arid areas of the world. One important factor that acts to increase soil stability and nutrient content, and thus to prevent water and wind erosion and enhance soil productivity of arid environment, is the presence of biological soil crusts (BSCs). They are the dominant ground cover and a key component of arid environments built up mainly by cyanobacteria. They enhance degraded soil quality by providing a stable and water-retaining substratum and increasing fertility by N and C fixations. The BioCrust project, funded by ANR (VMCS 2008), focuses on BSCs in the Sahelian zone of West Africa (Niger), a highly vulnerable zone facing soil degradation due to the harsh climatic conditions, with variable rainfall, and high anthropic pressure on land use. Unlike arid areas of developed countries (USA, Australia and Israel) or China where BSCs have been extensively studied, studies from Sahelian zone (Africa) are limited (neither the inventory of their different form nor the estimation of their spatial extension has been carried out). The form, structure and composition of BSCs vary depending on characteristics related to soils and biological composition. This study focuses on the soils characterisation using ground-based spectroradiometry. An extensive database was built included spectral measurements on BSCs, bare soils and vegetation that occur in the same area, visual criteria, in situ and laboratory measurements on the physical, chemical and biological characteristics of BSCs and their substratum. The work is carried out on geo-statistical processing of data acquired in sites along a north-south climatic gradient and three types of representative land uses. The investigated areas are highly vulnerable zone facing soil degradation due to the harsh climatic conditions, with variable rainfall, and high anthropic pressure on land use Soil surface disturbances due to the intensification of human activities. Spectral field and laboratory data were acquired in 2009, 2010 and 2011 with the FieldSpec Pro®. The spectra of soils with respect to different parameters are studied in details and their separability from BSCs, vegetation and vegetation residue as well are be analysed. First, the effect of the mineralogy and the geochemical variables on the soil reflectance properties is studied and then the feasibility to resolve some of these effects with satellite imagery (e. g., ASTER) will be tested in order to define the potential capability for identifying the locations of sensitive areas affected by soil degradation and appearance of BSCs.

Modelling fungal growth in heterogeneous soil: analyses of the effect of soil physical structure on fungal community dynamics

NASA Astrophysics Data System (ADS)

Falconer, R.; Radoslow, P.; Grinev, D.; Otten, W.

2009-04-01

Fungi play a pivital role in soil ecosystems contributing to plant productivity. The underlying soil physical and biological processes responsible for community dynamics are interrelated and, at present, poorly understood. If these complex processes can be understood then this knowledge can be managed with an aim to providing more sustainable agriculture. Our understanding of microbial dynamics in soil has long been hampered by a lack of a theoretical framework and difficulties in observation and quantification. We will demonstrate how the spatial and temporal dynamics of fungi in soil can be understood by linking mathematical modelling with novel techniques that visualise the complex structure of the soil. The combination of these techniques and mathematical models opens up new possibilities to understand how the physical structure of soil affects fungal colony dynamics and also how fungal dynamics affect soil structure. We will quantify, using X ray tomography, soil structure for a range of artificially prepared microcosms. We characterise the soil structures using soil metrics such as porosity, fractal dimension, and the connectivity of the pore volume. Furthermore we will use the individual based fungal colony growth model of Falconer et al. 2005, which is based on the physiological processes of fungi, to assess the effect of soil structure on microbial dynamics by qualifying biomass abundances and distributions. We demonstrate how soil structure can critically affect fungal species interactions with consequences for biological control and fungal biodiversity.

Contributing towards a conceptual model of soil-landscape co-evolution: observations from historic mining sites in Alberta, Canada

NASA Astrophysics Data System (ADS)

Raab, Thomas; Naeth, Anne; Hirsch, Florian; Raab, Alexandra

2016-04-01

At the former Diplomat Mine near Forestburg, Alberta, Canada we find a diverse soil landscape which can help to conceptualize factors and processes controlling initial pedogenesis and soil distribution on very young landforms in prairie environments. Due to differing reclamation practices in the 1950s and landslides occurring after spoil dumping, four areas can be distinguished by GoogleMaps/LiDAR evaluation and onsite field survey: (i) not-mined, (ii) stock piled and unreclaimed, (iii) stock piled and reclaimed and (iv) affected by post-mining geomorphodynamics and quasi-natural redeposition. The parent material for areas (ii) to (iv) was initially dumped by spreaders but only (ii) didn't undergo further change. Landscape (iii) has seen levelling of the piles by heavy machinery. Features of landscape (iv) are formed by reshaping the originally dumped and levelled structures. This last landscape unit marks the rim of the former mine adjacent to the river valley. In practice, mining activities formed new valley slopes. In contrast to the naturally developed slopes the mine slopes were less stable. Vegetation, which could have hindered slope wash erosion, was missing after dumping the spoil slopes. Slopes were very steep (or practically undercut) and therefore, substrates were naturally re-located by mass movements such as sliding and slumping. Characteristic sliding and slumping structures can be identified in the close-ups of the LiDAR images. Both processes, mass movement and slope wash erosion, may have overlapped. Landscape (ii) is the most contrasting one. Dumped stock piles formed elongated, curved and steep ridges. These landforms do not have a natural analogue but clearly show their technological origin. Most interesting are differences in vegetation. South and southwest facing slopes are covered with grassland whereas north and northeast facing slopes are covered with aspen trees. Some of the ditches are filled with water and form small elongated ponds. The characteristic geomorphology of the prairie can be found in landscape (i). Distinct differences are found in properties and types of soils in these four landscapes. Natural soils and pile soils characteristically differ in parent material and soil horizons. No information is gathered yet for the reclaimed soils and the landslides soils due to prohibited access. However, based on what we find at the former Diplomat Mine we can conclude that distribution, development and properties of unreclaimed soils in historical open cast mines in Alberta are primarily controlled by parent material and topography. The geomorphological set-up is dominating the trajectory of vegetation development and post-mining geomorphodynamics. Contrasting slope aspects determine micro climatic conditions and lead to different vegetation types. This has likely had an effect on soil development and soil properties (especially carbon stocks). Further studies will be conducted to quantify these differing soil properties to refine this conceptual model of initial pedogenesis and soil distribution on very young landforms in the prairie landscapes.

Using bioavailable soil fraction to assess the bioconcentration factor of plants in phytoremediation of mine soils

NASA Astrophysics Data System (ADS)

Roca, Núria; Rodríguez-Bocanegra, Javier; Bech, Jaume

2017-04-01

Polluted soils by heavy metals are characterized to present great concentrations of these pollutants. Ure wrote the following in 1996: "For understanding the chemistry of the heavy metals in their interaction with other soil components such as the clay minerals, organic matter and the soil solution, or to assess their mobility and retention as well as their availability to plants, the usual approach is to use selective chemical extraction". However, nowadays to assess the bioconcentration factor of plants in phytoremediation, the pseudototal or total concentration has been used. Strong mineral acids attack part of the silicate soil matrix and as consequence part of the heavy metals obtained are included in the structures of the mineral fraction. A different approach may, therefore, be more productive in the study of phytoremediation and the use of extractants, as EDTA or DTPA, can perhaps best be exploited by considering them in their role of bioconcentration factor. Moreover, EDTA and DTPA, which form strong complexes with many metals, can extract also organically complex metals. Properties of the soils collected in mining areas presented great variability, as they depend on materials where soils were developed, the complex mixture of heterogeneous wastes and the mining age. In the case of Caroline Mine in Hualgayoc (Perú), the mining is relatively modern and the available fraction of heavy metals of mine soils is low. The small available fraction concentration is due partly to both a few developed soil structure and low organic matter content. The only exception was the copper, with ranging from 1.2 to 36.2 % of total soil fraction. All plant species that were investigated in previous studies have a good ability to transport potential hazardous elements from the roots to the shoots and they have the ability to accumulate more than 1000 mg•kg-1 of heavy metals in the shoots. However, the bioconcentration factor was smaller than one for all the studied plants in every polluted site. The small bioconcentration values are due partly to both the large metal burdens of the mine soils and the fact that here the total concentration and not the extractable soil fraction concentration of the elements was used. When available fraction was used, the bioconcentration factor with DTPA was greater than one in all cases. The elevated Pb and Zn bioconcentration factor (>100) could be a good measure of the high capacity of these native plants to accumulate metals. The soils of the ancient Espinosa mine in Catalonia (Spain) presented great available concentrations of Cu, Pb and Zn and represent more than 50% of the total fraction in almost every polluted studied site. Therefore, the use of the bioconcentration factor doesn't show a relevant difference between total or extractable fraction because of the elevated extractable fraction of the total content. Therefore, the bioconcentration factor calculated with extractable fraction could be a good measure of plant capacity to accumulate metals.

Bark beetle-induced tree mortality alters stand energy budgets due to water budget changes

NASA Astrophysics Data System (ADS)

Reed, David E.; Ewers, Brent E.; Pendall, Elise; Frank, John; Kelly, Robert

2018-01-01

Insect outbreaks are major disturbances that affect a land area similar to that of forest fires across North America. The recent mountain pine bark beetle ( D endroctonus ponderosae) outbreak and its associated blue stain fungi ( Grosmannia clavigera) are impacting water partitioning processes of forests in the Rocky Mountain region as the spatially heterogeneous disturbance spreads across the landscape. Water cycling may dramatically change due to increasing spatial heterogeneity from uneven mortality. Water and energy storage within trees and soils may also decrease, due to hydraulic failure and mortality caused by blue stain fungi followed by shifts in the water budget. This forest disturbance was unique in comparison to fire or timber harvesting because water fluxes were altered before significant structural change occurred to the canopy. We investigated the impacts of bark beetles on lodgepole pine ( Pinus contorta) stand and ecosystem level hydrologic processes and the resulting vertical and horizontal spatial variability in energy storage. Bark beetle-impacted stands had on average 57 % higher soil moisture, 1.5 °C higher soil temperature, and 0.8 °C higher tree bole temperature over four growing seasons compared to unimpacted stands. Seasonal latent heat flux was highly correlated with soil moisture. Thus, high mortality levels led to an increase in ecosystem level Bowen ratio as sensible heat fluxes increased yearly and latent heat fluxes varied with soil moisture levels. Decline in canopy biomass (leaf, stem, and branch) was not seen, but ground-to-atmosphere longwave radiation flux increased, as the ground surface was a larger component of the longwave radiation. Variability in soil, latent, and sensible heat flux and radiation measurements increased during the disturbance. Accounting for stand level variability in water and energy fluxes will provide a method to quantify potential drivers of ecosystem processes and services as well as lead to greater confidence in measurements for all dynamic disturbances.

Permafrost and organic layer interactions over a climate gradient in a discontinuous permafrost zone

NASA Astrophysics Data System (ADS)

Johnson, Kristofer D.; Harden, Jennifer W.; McGuire, A. David; Clark, Mark; Yuan, Fengming; Finley, Andrew O.

2013-09-01

Permafrost is tightly coupled to the organic soil layer, an interaction that mediates permafrost degradation in response to regional warming. We analyzed changes in permafrost occurrence and organic layer thickness (OLT) using more than 3000 soil pedons across a mean annual temperature (MAT) gradient. Cause and effect relationships between permafrost probability (PF), OLT, and other topographic factors were investigated using structural equation modeling in a multi-group analysis. Groups were defined by slope, soil texture type, and shallow (<28 cm) versus deep organic (≥28 cm) layers. The probability of observing permafrost sharply increased by 0.32 for every 10-cm OLT increase in shallow OLT soils (OLTs) due to an insulation effect, but PF decreased in deep OLT soils (OLTd) by 0.06 for every 10-cm increase. Across the MAT gradient, PF in sandy soils varied little, but PF in loamy and silty soils decreased substantially from cooler to warmer temperatures. The change in OLT was more heterogeneous across soil texture types—in some there was no change while in others OLTs soils thinned and/or OLTd soils thickened at warmer locations. Furthermore, when soil organic carbon was estimated using a relationship with thickness, the average increase in carbon in OLTd soils was almost four times greater compared to the average decrease in carbon in OLTs soils across all soil types. If soils follow a trajectory of warming that mimics the spatial gradients found today, then heterogeneities of permafrost degradation and organic layer thinning and thickening should be considered in the regional carbon balance.

Permafrost and organic layer interactions over a climate gradient in a discontinuous permafrost zone

USGS Publications Warehouse

Johnson, Kristofer D.; Harden, Jennifer W.; McGuire, A. David; Clark, Mark; Yuan, Fengming; Finley, Andrew O.

2013-01-01

Permafrost is tightly coupled to the organic soil layer, an interaction that mediates permafrost degradation in response to regional warming. We analyzed changes in permafrost occurrence and organic layer thickness (OLT) using more than 3000 soil pedons across a mean annual temperature (MAT) gradient. Cause and effect relationships between permafrost probability (PF), OLT, and other topographic factors were investigated using structural equation modeling in a multi-group analysis. Groups were defined by slope, soil texture type, and shallow (<28 cm) versus deep organic (≥28 cm) layers. The probability of observing permafrost sharply increased by 0.32 for every 10-cm OLT increase in shallow OLT soils (OLTs) due to an insulation effect, but PF decreased in deep OLT soils (OLTd) by 0.06 for every 10-cm increase. Across the MAT gradient, PF in sandy soils varied little, but PF in loamy and silty soils decreased substantially from cooler to warmer temperatures. The change in OLT was more heterogeneous across soil texture types—in some there was no change while in others OLTs soils thinned and/or OLTd soils thickened at warmer locations. Furthermore, when soil organic carbon was estimated using a relationship with thickness, the average increase in carbon in OLTd soils was almost four times greater compared to the average decrease in carbon in OLTs soils across all soil types. If soils follow a trajectory of warming that mimics the spatial gradients found today, then heterogeneities of permafrost degradation and organic layer thinning and thickening should be considered in the regional carbon balance.

Minimum depth of soil cover above long-span soil-steel railway bridges

NASA Astrophysics Data System (ADS)

Esmaeili, Morteza; Zakeri, Jabbar Ali; Abdulrazagh, Parisa Haji

2013-12-01

Recently, soil-steel bridges have become more commonly used as railway-highway crossings because of their economical advantages and short construction period compared with traditional bridges. The currently developed formula for determining the minimum depth of covers by existing codes is typically based on vehicle loads and non-stiffened panels and takes into consideration the geometrical shape of the metal structure to avoid the failure of soil cover above a soil-steel bridge. The effects of spans larger than 8 m or more stiffened panels due to railway loads that maintain a safe railway track have not been accounted for in the minimum cover formulas and are the subject of this paper. For this study, two-dimensional finite element (FE) analyses of four low-profile arches and four box culverts with spans larger than 8 m were performed to develop new patterns for the minimum depth of soil cover by considering the serviceability criterion of the railway track. Using the least-squares method, new formulas were then developed for low-profile arches and box culverts and were compared with Canadian Highway Bridge Design Code formulas. Finally, a series of three-dimensional (3D) finite element FE analyses were carried out to control the out-of-plane buckling in the steel plates due to the 3D pattern of train loads. The results show that the out-of-plane bending does not control the buckling behavior of the steel plates, so the proposed equations for minimum depth of cover can be appropriately used for practical purposes.

Implications of stillage land disposal: a critical review on the impacts of fertigation.

PubMed

Fuess, Lucas Tadeu; Garcia, Marcelo Loureiro

2014-12-01

Stillage is the main wastewater from ethanol production, generated specifically in the step of distillation. Regardless the feedstock, stillage contains high concentrations of organic matter, potassium and sulfates, as well as acidic and corrosive characteristics. Currently almost the entire volume of stillage generated in Brazilian distilleries is directed to the fertigation of sugarcane fields, due to its fertilizer character. However, the polluting potential of stillage characterizes its land disposal as problematic, considering probable negative impacts on the soil structure and water resources in case of excessive dosages. Since the literature lacks critical content describing clearly the cons related to the reuse of stillage in agriculture in the long-term, this review aimed to assess the real polluting potential of stillage, and the implications of its land disposal and/or discharge into water bodies. Evidence from the literature indicate that the main obstacles to reuse stillage in natura include risks of soil salinization; clogging of pores, reduction in the microbial activity and the significant depletion of dissolved oxygen concentrations in water bodies; contamination per nitrates and eutrophication; soil structure destabilization due to high concentrations of potassium and sodium; and, possible acidification of soil and water resources, considering the low pH of stillage (∼4,5). Toxic metals, such as cadmium, lead, copper, chromium and nickel, were also identified in concentrations above the recommended limits in stillage samples, increasing risks to human health (e.g. carcinogenic potential) and to crops (e.g. productivity loss). In short, although some studies report benefits from the land application of stillage, its treatment prior to disposal is essential to make fertigation an environmentally suitable practice. Copyright © 2014 Elsevier Ltd. All rights reserved.

Lithology and Bedrock Geotechnical Properties in Controlling Rock and Ice Mass Movements in Mountain Cryosphere

NASA Astrophysics Data System (ADS)

Karki, A.; Kargel, J. S.

2017-12-01

Landslides and ice avalanches kill >5000 people annually (D. Petley, 2012, Geology http://dx.doi.org/10.1130/G33217.1); destroy or damage homes and infrastructure; and create secondary hazards, such as flooding due to blocked rivers. Critical roles of surface slope, earthquake shaking, soil characteristics and saturation, river erosional undercutting, rainfall intensity, snow loading, permafrost thaw, freeze-thaw and frost shattering, debuttressing of unstable masses due to glacier thinning, and vegetation burn or removal are well-known factors affecting landslides and avalanches. Lithology-dependent bedrock physicochemical-mechanical properties—especially brittle elastic and shear strength, and chemical weathering properties that affect rock strength, are also recognized controls on landsliding and avalanching, but are not commonly considered in detail in landslide susceptibility assessment. Lithology controls the formation of weakened, weathered bedrock; the formation and accumulation of soils; soil saturation-related properties of grain size distribution, porosity, and permeability; and soil creep related to soil wetting-drying and freeze-thaw. Lithology controls bedrock abrasion and glacial erosion and debris production rates, the formation of rough or smoothed bedrock surface by glaciation, fluvial, and freeze-thaw processes. Lithologic variability (e.g., bedding; fault and joint structure) affects contrasts in chemical weathering rates, porosity, and susceptibility to frost shattering and chemical weathering, hence formation of overhanging outcrops and weakened slip planes. The sudden failure of bedrock or sudden slip of ice on bedrock, and many other processes depend on rock lithology, microstructure (porosity and permeability), and macrostructure (bedding; faults). These properties are sometimes considered in gross terms for landslide susceptibility assessment, but in detailed applications to specific development projects, and in detailed mapping over large areas, the details of rock lithology, weathering state, and structure are rarely considered. We have initiated a geological and rock mechanical properties approach to landslide susceptibility assessments in areas of high concern for human and infrastructure safety.

Drivers of spatial heterogeneity in nitrogen processing among three alpine plant communities in the Rocky Mountains

NASA Astrophysics Data System (ADS)

Churchill, A. C.; Beers, A.; Grinath, J.; Bowman, W. D.

2017-12-01

Nitrogen cycling across the globe has been fundamentally altered due to regional elevated N deposition and there is a cascade of ecosystem consequences including shifts in species composition, eutrophication, and soil acidification. Making predictions that encompass the factors that drive these ecosystem changes has frequently been limited to single ecosystem types, or areas with fairly homogenous abiotic conditions. The alpine is an ecosystem type that exhibits changes under relatively low levels of N depositions due to short growing seasons and shallow soils limiting N storage. While recent work provided estimates for the magnitude of N associated with ecosystem changes, less is known about the within-site factors that may interact to stabilize or amplify the differential response of N pools under future conditions of resource deposition. To examine numerous potential within-site and regional factors (both biotic and abiotic) affecting ecosystem N pools we examined the relationship between those factors and a suite of ecosystem pools of N followed by model selection procedures and structural equation modelling. Measurements were conducted at Niwot Ridge Long Term Ecological Research site and in Rocky Mountain National Park in three distinct alpine meadow ecosystems (dry, moist, and wet meadows). These meadows span a moisture gradient as well as plant community composition, thereby providing high variability of potential biotic and abiotic drivers across small spatial scales in the alpine. In general, regional scale abiotic factors such as site levels of annual average N deposition or precipitation were poor predictors of seasonal pools of N, while spring soil water pools of N were negatively correlated with elevation. Models containing multiple abiotic and biotic drivers, however, were best at predicting soil and plant pools of N across the two sites. Future analysis will include highlight interactions among with-site factors affecting N pools in the alpine using structural equation modelling to statistically examine the bidirectional relationship between plant communities and soil pools of N.

Identifying conservation hotspots using tillage erosion modeling

USDA-ARS?s Scientific Manuscript database

Tillage operations redistribute soil within agricultural landscapes due to deviations in the quantity of soil moved during tillage. Tillage erosion is the net loss or accumulation of soil at any spot within an agricultural landscape due to soil being directly moved by tillage; it is a dominant erosi...

A comparison of site preparation and sowing techniques for direct seeding bottomland red oaks in the Lower Mississippi Alluvial Valley

Treesearch

Brian R. Lockhart; Bob Keeland; John McCoy; Thomas J. Dean

2005-01-01

Prior to European settlement, bottomland hardwood forests covered about 24 million acres in the Lower Mississippi Alluvial Valley (LMAV). Due to the rich nature of these alluvial soils and the development of flood control structures, much of this land has been converted to agricultural production.

Developing and using artificial soils to analyze soil microbial processes

NASA Astrophysics Data System (ADS)

Gao, X.; Cheng, H. Y.; Boynton, L.; Masiello, C. A.; Silberg, J. J.

2017-12-01

Microbial diversity and function in soils are governed by soil characteristics such as mineral composition, particles size and aggregations, soil organic matter (SOM), and availability of nutrients and H2O. The spatial and temporal heterogeneity of soils creates a range of niches (hotspots) differing in the availability of O2, H2O, and nutrients, which shapes microbial activities at scales ranging from nanometer to landscape. Synthetic biologists often examine microbial response trigged by their environment conditions in nutrient-rich aqueous media using single strain microbes. While these studies provided useful insight in the role of soil microbes in important soil biogeochemical processes (e.g., C cycling, N cycling, etc.), the results obtained from the over-simplified model systems are often not applicable natural soil systems. On the contrary, soil microbiologists examine microbial processes in natural soils using longer incubation time. However, due to its physical, chemical and biological complexity of natural soils, it is often difficult to examine soil characteristics independently and understand how each characteristic influences soil microbial activities and their corresponding soil functioning. Therefore, it is necessary to bridge the gap and develop a model matrix to exclude unpredictable influences from the environment while still reliably mimicking real environmental conditions. The objective of this study is to design a range of ecologically-relevant artificial soils with varying texture (particle size distribution), structure, mineralogy, SOM content, and nutrient heterogeneity. We thoroughly characterize the artificial soils for pH, active surface area and surface morphology, cation exchange capacity (CEC), and water retention curve. We demonstrate the effectiveness of the artificial soils as useful matrix for microbial processes, such as microbial growth and horizontal gene transfer (HGT), using the gas-reporting biosensors recently developed in our lab.

Soils as Sediment database: closing a gap between soil science and geomorphology

NASA Astrophysics Data System (ADS)

Kuhn, Nikolaus J.

2016-04-01

Soils are an interface between the Earth's spheres and shaped by the nature of the interaction between them. The relevance of soil properties for the nature of the interaction between atmosphere, hydrosphere and biosphere is well-studied and accepted, on point- or ecotone-scale. However, this understanding of the largely vertical connections between spheres is not matched by a similar recognition of soil properties affecting processes acting largely in a lateral way across the land surface, such as erosion, transport and deposition of soil. Key areas where such an understanding is essential are all issues related to the lateral movement of soil-bound substances that affect the nature of soils itself, as well as water or vegetation downslope from the source area. The redistribution of eroded soil falls several disciplines, most notably soil science, agronomy, hydrology and geomorphology. Accordingly, the way sediment is described differs: in soil science, aggregation and structure are essential properties, while most process-based soil erosion models treat soil as a mixture of individual mineral grains, based on concepts derived in fluvial geomorphology or civil engineering. The actual behavior of aggregated sediment is not reflected by either approach and difficult to capture due to the dynamic nature of aggregation, especially in an environment such as running water. Still, a proxy to assess the uncertainties introduced by aggregation on the behavior of soil as sediment would represent a step forward. To develop such a proxy, a database collating relevant soil and sediment properties could serve as an initial step to identify which soil types and erosion scenarios are prone to generate a high uncertainty compared to the use of soil texture in erosion models. Furthermore, it could serve to develop standardized analytical procedures for appropriate description of soil as sediment.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Thein, Pyi Soe, E-mail: pyisoethein@yahoo.com; Geological Engineering Department, Gadjah Mada University, Yogyakarta; Pramumijoyo, Subagyo

In this study, we investigated the underground structure at Prambanan area, Yogyakarta. We performed single observations of microtremor at 124 sites in Prambanan area. The results enabled us to estimate the site-dependent shaking characteristics of earthquake ground motion. We also conducted 2-site bore holes investigation to gain a representative determination of the soil condition of subsurface structures in Prambanan. From the SPT of borehole observations, the prambanan area corresponds to relatively soil condition with Vs ≤ 298 m/s, the predominant periods due to horizontal vertical ratios (HVSRs) are in the range of 0.48 to 1.19 s and the frequency aremore » in the range of 0.95 to 1.92 Hz. By making these observations, we can obtain a relationship between the predominant periods, frequency and distribution of the first layer thickness of the sediment.« less

The effect of row structure on soil moisture retrieval accuracy from passive microwave data.

PubMed

Xingming, Zheng; Kai, Zhao; Yangyang, Li; Jianhua, Ren; Yanling, Ding

2014-01-01

Row structure causes the anisotropy of microwave brightness temperature (TB) of soil surface, and it also can affect soil moisture retrieval accuracy when its influence is ignored in the inversion model. To study the effect of typical row structure on the retrieved soil moisture and evaluate if there is a need to introduce this effect into the inversion model, two ground-based experiments were carried out in 2011. Based on the observed C-band TB, field soil and vegetation parameters, row structure rough surface assumption (Q p model and discrete model), including the effect of row structure, and flat rough surface assumption (Q p model), ignoring the effect of row structure, are used to model microwave TB of soil surface. Then, soil moisture can be retrieved, respectively, by minimizing the difference of the measured and modeled TB. The results show that soil moisture retrieval accuracy based on the row structure rough surface assumption is approximately 0.02 cm(3)/cm(3) better than the flat rough surface assumption for vegetated soil, as well as 0.015 cm(3)/cm(3) better for bare and wet soil. This result indicates that the effect of row structure cannot be ignored for accurately retrieving soil moisture of farmland surface when C-band is used.

The use of pruned chipped branches to increase the soil infiltration capacity and reduce the soil losses on citrus orchards in Eastern Spain

NASA Astrophysics Data System (ADS)

González-Pelayo, Óscar; Llovet, Joan; Giménez-Morera, Antonio; Jordán, Antonio; Pereira, Paulo; Novara, Agata; García-Orenes, Fuensanta; Cerdà, Artemi

2015-04-01

Soil water erosion is causing problems on the agriculture land of the world. The high erosion rates registered in the agriculture land are due to the lack of a vegetation cover that protects the soil. High erosion rates in agriculture lands are found in Africa, Europe, Asia, and any other continent. Soil erosion on citrus orchards has been researched recently and shown huge erosion rates in the Mediterranean and in China. All this research findings allow us to confirm that the soil erosion rates on citrus orchards are not sustainable and strategies to control the soil erosion should be applied. The increasing erosion rates are due to the bare soils, but also are due to the soil structure degradation and soil organic matter exhaustion. Some authors applied cover on crops to avoid the raindrop impact and the surfaces wash but there is a need to develop new strategies to reduce soil losses and keep sustainable the citrus productions. The agriculture production also results in a large amount of residues than can be a resource to improve the soil cover. This has been done in road embankments, in forest land affected by wildfires and on afforestation. As a consequence of the mechanization of the agriculture, and the reduction of the draft animals (mainly horses, mules, donkeys and oxen), the straw and the pruned branches are being a residue instead of a resource in many developed countries. Straw was used as a forage and the pruned branches as a source of heat and energy but both can be used as a mulch to control the soil erosion. The pruned branches can contribute with a valuable source of nutrients and a good soil protection. The leaves of the trees, and some parts of the plants, once harvest can contribute to reduce the soil losses. Our goal is to test if a residue such as the chipped pruned branches can be transformed as a resource that will help to control the soil erosion rates. Straw has been seen as a very efficient to reduce the water losses in agriculture land, the soil losses in fire affected land, improving soil properties, but very little is done in active citrus orchards plantations. On this study, forty rainfall simulations under 55 mm h-1 rainfall intensity during one hour, were carried out on 0,25 m2 microplots: bare (n=20) and covered with chipped pruned branches (n=20). The plots covered with the chipped branches had different mulch cover; ranging from 0 to 100 % cover and from 0 g m2 to 465 g m2. The results show a positive effect of the chipped pruned branches that reduce the soil losses to 10 % of the bare soils after a mulch cover of 25 %. It shows an exponential relation between the straw cover and weight, with the sediment yield. Acknowledgements The research projects GL2008-02879/BTE, LEDDRA 243857 and RECARE FP7 n° 603498 supported this research.

Rich in life but poor in data: the known knowns and known unknowns of modelling how soil biology drives soil structure

NASA Astrophysics Data System (ADS)

Hallett, Paul; Ogden, Mike

2015-04-01

Soil biology has a fascinating capacity to manipulate pore structure by altering or overcoming hydrological and mechanical properties of soil. Many have postulated, quite rightly, that this capacity of soil biology to 'engineer' its habitat drives its diversity, improves competitiveness and increases resilience to external stresses. A large body of observational research has quantified pore structure evolution accompanied by the growth of organisms in soil. Specific compounds that are exuded by organisms or the biological structures they create have been isolated and found to correlate well with observed changes to pore structure or soil stability. This presentation will provide an overview of basic mechanical and hydrological properties of soil that are affected by biology, and consider missing data that are essential to model how they impact soil structure evolution. Major knowledge gaps that prevent progress will be identified and suggestions will be made of how research in this area should progress. We call for more research to gain a process based understanding of structure formation by biology, to complement observational studies of soil structure before and after imposed biological activity. Significant advancement has already been made in modelling soil stabilisation by plant roots, by combining data on root biomechanics, root-soil interactions and soil mechanical properties. Approaches for this work were developed from earlier materials science and geotechnical engineering research, and the same ethos should be adopted to model the impacts of other biological compounds. Fungal hyphae likely reinforce soils in a similar way to plant roots, with successful biomechanical measurements of these micron diameter structures achieved with micromechanical test frames. Extending root reinforcement models to fungi would not be a straightforward exercise, however, as interparticle bonding and changes to pore water caused by fungal exudates could have a major impact on structure formation and stability. Biological exudates from fungi, bacteria or roots have been found to decrease surface tension and increase viscosity of pore water, with observed impacts to soil strength and water retention. Modelling approaches developed in granular mechanics and geotechnical engineering could be built upon to incorporate biological transformations of hydrological and mechanical properties of soil. With new testing approaches, adapted from materials science, pore scale hydromechanical impacts from biological exudates can be quantified. The research can be complemented with model organisms with differences in biological structures (e.g. root hair mutants), exudation or other properties. Coupled with technological advances that provide 4D imaging of soil structure at relatively rapid capture rates, the potential opportunities to disentangle and model how biology drives soil structure evolution and stability are vast. By quantifying basic soil hydrological and mechanical processes that are driven by soil biology, unknown unknowns may also emerge, providing new insight into how soils function.

Vertical distribution of the soil microbiota along a successional gradient in a glacier forefield.

PubMed

Rime, Thomas; Hartmann, Martin; Brunner, Ivano; Widmer, Franco; Zeyer, Josef; Frey, Beat

2015-03-01

Spatial patterns of microbial communities have been extensively surveyed in well-developed soils, but few studies investigated the vertical distribution of micro-organisms in newly developed soils after glacier retreat. We used 454-pyrosequencing to assess whether bacterial and fungal community structures differed between stages of soil development (SSD) characterized by an increasing vegetation cover from barren (vegetation cover: 0%/age: 10 years), sparsely vegetated (13%/60 years), transient (60%/80 years) to vegetated (95%/110 years) and depths (surface, 5 and 20 cm) along the Damma glacier forefield (Switzerland). The SSD significantly influenced the bacterial and fungal communities. Based on indicator species analyses, metabolically versatile bacteria (e.g. Geobacter) and psychrophilic yeasts (e.g. Mrakia) characterized the barren soils. Vegetated soils with higher C, N and root biomass consisted of bacteria able to degrade complex organic compounds (e.g. Candidatus Solibacter), lignocellulolytic Ascomycota (e.g. Geoglossum) and ectomycorrhizal Basidiomycota (e.g. Laccaria). Soil depth only influenced bacterial and fungal communities in barren and sparsely vegetated soils. These changes were partly due to more silt and higher soil moisture in the surface. In both soil ages, the surface was characterized by OTUs affiliated to Phormidium and Sphingobacteriales. In lower depths, however, bacterial and fungal communities differed between SSD. Lower depths of sparsely vegetated soils consisted of OTUs affiliated to Acidobacteria and Geoglossum, whereas depths of barren soils were characterized by OTUs related to Gemmatimonadetes. Overall, plant establishment drives the soil microbiota along the successional gradient but does not influence the vertical distribution of microbiota in recently deglaciated soils. © 2014 John Wiley & Sons Ltd.

Benchmarking NLDAS-2 Soil Moisture and Evapotranspiration to Separate Uncertainty Contributions

NASA Technical Reports Server (NTRS)

Nearing, Grey S.; Mocko, David M.; Peters-Lidard, Christa D.; Kumar, Sujay V.; Xia, Youlong

2016-01-01

Model benchmarking allows us to separate uncertainty in model predictions caused 1 by model inputs from uncertainty due to model structural error. We extend this method with a large-sample approach (using data from multiple field sites) to measure prediction uncertainty caused by errors in (i) forcing data, (ii) model parameters, and (iii) model structure, and use it to compare the efficiency of soil moisture state and evapotranspiration flux predictions made by the four land surface models in the North American Land Data Assimilation System Phase 2 (NLDAS-2). Parameters dominated uncertainty in soil moisture estimates and forcing data dominated uncertainty in evapotranspiration estimates; however, the models themselves used only a fraction of the information available to them. This means that there is significant potential to improve all three components of the NLDAS-2 system. In particular, continued work toward refining the parameter maps and look-up tables, the forcing data measurement and processing, and also the land surface models themselves, has potential to result in improved estimates of surface mass and energy balances.

Benchmarking NLDAS-2 Soil Moisture and Evapotranspiration to Separate Uncertainty Contributions

PubMed Central

Nearing, Grey S.; Mocko, David M.; Peters-Lidard, Christa D.; Kumar, Sujay V.; Xia, Youlong

2018-01-01

Model benchmarking allows us to separate uncertainty in model predictions caused by model inputs from uncertainty due to model structural error. We extend this method with a “large-sample” approach (using data from multiple field sites) to measure prediction uncertainty caused by errors in (i) forcing data, (ii) model parameters, and (iii) model structure, and use it to compare the efficiency of soil moisture state and evapotranspiration flux predictions made by the four land surface models in the North American Land Data Assimilation System Phase 2 (NLDAS-2). Parameters dominated uncertainty in soil moisture estimates and forcing data dominated uncertainty in evapotranspiration estimates; however, the models themselves used only a fraction of the information available to them. This means that there is significant potential to improve all three components of the NLDAS-2 system. In particular, continued work toward refining the parameter maps and look-up tables, the forcing data measurement and processing, and also the land surface models themselves, has potential to result in improved estimates of surface mass and energy balances. PMID:29697706

Benchmarking NLDAS-2 Soil Moisture and Evapotranspiration to Separate Uncertainty Contributions.

PubMed

Nearing, Grey S; Mocko, David M; Peters-Lidard, Christa D; Kumar, Sujay V; Xia, Youlong

2016-03-01

Model benchmarking allows us to separate uncertainty in model predictions caused by model inputs from uncertainty due to model structural error. We extend this method with a "large-sample" approach (using data from multiple field sites) to measure prediction uncertainty caused by errors in (i) forcing data, (ii) model parameters, and (iii) model structure, and use it to compare the efficiency of soil moisture state and evapotranspiration flux predictions made by the four land surface models in the North American Land Data Assimilation System Phase 2 (NLDAS-2). Parameters dominated uncertainty in soil moisture estimates and forcing data dominated uncertainty in evapotranspiration estimates; however, the models themselves used only a fraction of the information available to them. This means that there is significant potential to improve all three components of the NLDAS-2 system. In particular, continued work toward refining the parameter maps and look-up tables, the forcing data measurement and processing, and also the land surface models themselves, has potential to result in improved estimates of surface mass and energy balances.

Analysis of Soil Structure Turnover with Garnet Particles and X-Ray Microtomography

PubMed Central

Vogel, Hans-Jörg

2016-01-01

Matter turnover in soil is tightly linked to soil structure which governs the heterogeneous distribution of habitats, reaction sites and pathways in soil. Thereby, the temporal dynamics of soil structure alteration is deemed to be important for essential ecosystem functions of soil but very little is known about it. A major reason for this knowledge gap is the lack of methods to study soil structure turnover directly at microscopic scales. Here we devise a conceptual approach and an image processing workflow to study soil structure turnover by labeling some initial state of soil structure with small garnet particles and tracking their fate with X-ray microtomography. The particles adhere to aggregate boundaries at the beginning of the experiment but gradually change their position relative to the nearest pore as structure formation progresses and pores are destructed or newly formed. A new metric based on the contact distances between particles and pores is proposed that allows for a direct quantification of soil structure turnover rates. The methodology is tested for a case study about soil compaction of a silty loam soil during stepwise increase of bulk density (ρ = {1.1, 1.3, 1.5} g/cm3). We demonstrate that the analysis of mean contact distances provides genuinely new insights about changing diffusion pathways that cannot be inferred neither from conventional pore space attributes (porosity, mean pore size, pore connectivity) nor from deformation analysis with digital image correlation. This structure labeling approach to quantify soil structure turnover provides a direct analogy to stable isotope labeling for the analysis of matter turnover and can be readily combined with each other. PMID:27453995

Spatial and temporal changes in the structure of groundwater nitrate concentration time series (1935 1999) as demonstrated by autoregressive modelling

NASA Astrophysics Data System (ADS)

Jones, A. L.; Smart, P. L.

2005-08-01

Autoregressive modelling is used to investigate the internal structure of long-term (1935-1999) records of nitrate concentration for five karst springs in the Mendip Hills. There is a significant short term (1-2 months) positive autocorrelation at three of the five springs due to the availability of sufficient nitrate within the soil store to maintain concentrations in winter recharge for several months. The absence of short term (1-2 months) positive autocorrelation in the other two springs is due to the marked contrast in land use between the limestone and swallet parts of the catchment, rapid concentrated recharge from the latter causing short term switching in the dominant water source at the spring and thus fluctuating nitrate concentrations. Significant negative autocorrelation is evident at lags varying from 4 to 7 months through to 14-22 months for individual springs, with positive autocorrelation at 19-20 months at one site. This variable timing is explained by moderation of the exhaustion effect in the soil by groundwater storage, which gives longer residence times in large catchments and those with a dominance of diffuse flow. The lags derived from autoregressive modelling may therefore provide an indication of average groundwater residence times. Significant differences in the structure of the autocorrelation function for successive 10-year periods are evident at Cheddar Spring, and are explained by the effect the ploughing up of grasslands during the Second World War and increased fertiliser usage on available nitrogen in the soil store. This effect is moderated by the influence of summer temperatures on rates of mineralization, and of both summer and winter rainfall on the timing and magnitude of nitrate leaching. The pattern of nitrate leaching also appears to have been perturbed by the 1976 drought.

40 CFR 264.114 - Disposal or decontamination of equipment, structures and soils.

Code of Federal Regulations, 2014 CFR

2014-07-01

... equipment, structures and soils. 264.114 Section 264.114 Protection of Environment ENVIRONMENTAL PROTECTION... of equipment, structures and soils. During the partial and final closure periods, all contaminated equipment, structures and soils must be properly disposed of or decontaminated unless otherwise specified in...

40 CFR 264.114 - Disposal or decontamination of equipment, structures and soils.

Code of Federal Regulations, 2012 CFR

2012-07-01

... equipment, structures and soils. 264.114 Section 264.114 Protection of Environment ENVIRONMENTAL PROTECTION... of equipment, structures and soils. During the partial and final closure periods, all contaminated equipment, structures and soils must be properly disposed of or decontaminated unless otherwise specified in...

40 CFR 264.114 - Disposal or decontamination of equipment, structures and soils.

Code of Federal Regulations, 2011 CFR

2011-07-01

... equipment, structures and soils. 264.114 Section 264.114 Protection of Environment ENVIRONMENTAL PROTECTION... of equipment, structures and soils. During the partial and final closure periods, all contaminated equipment, structures and soils must be properly disposed of or decontaminated unless otherwise specified in...

40 CFR 264.114 - Disposal or decontamination of equipment, structures and soils.

Code of Federal Regulations, 2010 CFR

2010-07-01

... equipment, structures and soils. 264.114 Section 264.114 Protection of Environment ENVIRONMENTAL PROTECTION... of equipment, structures and soils. During the partial and final closure periods, all contaminated equipment, structures and soils must be properly disposed of or decontaminated unless otherwise specified in...

40 CFR 264.114 - Disposal or decontamination of equipment, structures and soils.

Code of Federal Regulations, 2013 CFR

2013-07-01

... equipment, structures and soils. 264.114 Section 264.114 Protection of Environment ENVIRONMENTAL PROTECTION... of equipment, structures and soils. During the partial and final closure periods, all contaminated equipment, structures and soils must be properly disposed of or decontaminated unless otherwise specified in...

Soil microbiome responses to the short-term effects of Amazonian deforestation.

PubMed

Navarrete, Acacio A; Tsai, Siu M; Mendes, Lucas W; Faust, Karoline; de Hollander, Mattias; Cassman, Noriko A; Raes, Jeroen; van Veen, Johannes A; Kuramae, Eiko E

2015-05-01

Slash-and-burn clearing of forest typically results in increase in soil nutrient availability. However, the impact of these nutrients on the soil microbiome is not known. Using next generation sequencing of 16S rRNA gene and shotgun metagenomic DNA, we compared the structure and the potential functions of bacterial community in forest soils to deforested soils in the Amazon region and related the differences to soil chemical factors. Deforestation decreased soil organic matter content and factors linked to soil acidity and raised soil pH, base saturation and exchangeable bases. Concomitant to expected changes in soil chemical factors, we observed an increase in the alpha diversity of the bacterial microbiota and relative abundances of putative copiotrophic bacteria such as Actinomycetales and a decrease in the relative abundances of bacterial taxa such as Chlamydiae, Planctomycetes and Verrucomicrobia in the deforested soils. We did not observe an increase in genes related to microbial nutrient metabolism in deforested soils. However, we did observe changes in community functions such as increases in DNA repair, protein processing, modification, degradation and folding functions, and these functions might reflect adaptation to changes in soil characteristics due to forest clear-cutting and burning. In addition, there were changes in the composition of the bacterial groups associated with metabolism-related functions. Co-occurrence microbial network analysis identified distinct phylogenetic patterns for forest and deforested soils and suggested relationships between Planctomycetes and aluminium content, and Actinobacteria and nitrogen sources in Amazon soils. The results support taxonomic and functional adaptations in the soil bacterial community following deforestation. We hypothesize that these microbial adaptations may serve as a buffer to drastic changes in soil fertility after slash-and-burning deforestation in the Amazon region. © 2015 John Wiley & Sons Ltd.

Evaluating the effect of tillage on soil structural properties using the pedostructure concept

USDA-ARS?s Scientific Manuscript database

The pedostructure (PS) concept is a physically-based method of soil characterization that defines a soil based on its structure and the relationship between structure and soil water behavior. There are fifteen unique pedostructure parameters that define the macropore and micropore soil water behavio...

Invasion of a semi-arid shrubland by annual grasses increases autotrophic and heterotrophic soil respiration rates due to altered soil moisture and temperature patterns

NASA Astrophysics Data System (ADS)

Mauritz, M.; Hale, I.; Lipson, D.

2010-12-01

Shrub <-> grassland conversions are a globally occurring phenomenon altering habitat structure, quality and nutrient cycling. Grasses and shrubs differ in their above and belowground biomass allocation, root architecture, phenology, litter quality and quantity. Conversion affects soil microbial communities, soil moisture and temperature and carbon (C) allocation patterns. However, the effect of conversion on C storage is regionally variable and there is no consistent direction of change. In Southern California invasion by annual grasses is a major threat to native shrub communities and it has been proposed that grass invasion increases NPP and ecosystem C storage (Wolkovich et al, 2009). In order to better understand how this shrub <-> grassland conversion changes ecosystem C storage it is important to understand the partitioning of soil respiration into autotrophic and heterotrophic components. Respiration was measured in plots under shrubs and grasses from February when it was cold and wet to July when it was hot and dry, capturing seasonal transitions in temperature and water availability. Roots were excluded under shrubs and grasses with root exclusion cores to quantify heterotrophic respiration. Using total soil respiration (Rt) = autotrophic respiration (root) (Ra)+ heterotrophic respiration (microbial) (Rh) the components contributing to total soil respiration can be evaluated. Respiration, soil moisture and temperature were measured daily at four hour intervals using Licor 8100 automated chamber measurements. Throughout the measurement period, Rt under grasses exceeded Rt under shrubs. Higher Rt levels under grasses were mainly due to higher Ra in grasses rather than changes in Rh. On average grass Ra was almost double shrub Ra. Higher grass respiration levels are partially explained by differences in soil moisture and temperature between shrubs and grasses. Respiration rates responded similarly to seasonal transitions regardless of treatment although Ra had a much stronger seasonal response. Across all months changes in respiration rates are explained by changes in soil moisture. However, within wet periods respiration rates increase with temperature. From February to April the soil was wet and respiration levels gradually increased as day time soil temperatures increased. From April onwards absence of precipitation events and rising soil temperatures caused the soils to rapidly dry out. As a result Rt rates declined and gradually converged with Rh levels. As soils dried, grass Ra declined more gradually than shrub Ra. This was contrary to our expectation that shrub roots would respire longer into the dry season because they have deeper roots and can access water. The high late-season levels of respiration observed in the grass community are possibly due to the presence of invasive forbs which have deep tap roots and continue to grow after the grasses have senesced. Conversion from native shrubs to annual invasive grasses increased both Rt and Rh which indicates changes in plant C allocation and decomposition rates of soil C. The continued encroachment of grasses on shrubland has important implications for the future of C storage in this system.

The Role of Management in Enrichment Ratio Dynamics and Resilience of Aggregate Fractions Via Raindrop Impact within Agricultural Hillslopes

NASA Astrophysics Data System (ADS)

Wacha, K.; Papanicolaou, T.; Hatfield, J.; Cambardella, C.; Abban, B. K.; Wilson, C. G.; Filley, T. R.; Hou, T.; Dold, C.

2017-12-01

The abundance and distribution of surface soil size fractions has been shown to be reflective of changes in management practices and landscape position. Soil size fractions exist in both un-aggregated and aggregated forms that differ in textural and biological composition, which can impact soil hydrology and aggregation processes. Soils with higher stocks of soil organic matter (SOM) promote higher biological activity, infiltration, and soil structure due to stronger, more resilient aggregates. Within ag-systems, intensive cultivation and steep gradients can negatively impact the formation/stability of aggregates and amplify erosion processes, which redistributes material along downslope flowpathways to varying degrees, based on the amount of available surface cover during a rainfall event. The innate variability in SOM composition found amongst the size fractions combined with these highly active flowpathways, produces a symphony of interactive biogeochemical and hydrologic processes, which promote spatial landscape heterogeneity. Due to this intricacy, accurately assessing changes in SOM stocks within high energy ag-systems is extremely challenging, and could greatly impact soil carbon budgets at the hillslope and greater spatial scales. To address this, in part, we utilize a systematic approach that isolates the role of management in building aggregate resilience to hydrologic forcing. Soil samples were collected from farm fields with varying slopes (1-20%) and management conditions, and then isolated into seven aggregate size fractions. Each aggregate fraction was tested for resilience to raindrop impact with corresponding SOM composition and biological activity. Rainfall simulations were conducted on plots under representative management and gradient to capture the dynamicity of the size fractions being transported during an applied rainfall event. Results found that small macroaggregate fractions were most indicative of changes in management, and erosion rates from plots were inversely proportional to SOM enrichment. These experiments not only promote our fundamental understanding on the dynamics of surface soil and SOM redistribution but also can provide guidance into best management practices that promote aggregate stability, decrease soil loss, and enhance soil health.

Mechanisms for increased soil C storage with increasing temporal and spatial plant diversity in Agroecosystems

NASA Astrophysics Data System (ADS)

Tiemann, L. K.; Grandy, S.; Marin-Spiotta, E.; Atkinson, E. E.

2012-12-01

Generally, there are positive relationships between plant species diversity and net primary production and other key ecosystem functions. However, the effects of aboveground diversity on soil microbial communities and ecosystem processes they mediate, such as soil C sequestration, remain unclear. In this study, we used an 11-y cropping diversity study where increases in diversity have increased crop yields. At the experimental site, temporal diversity is altered using combinations of annual crop rotations, while spatial diversity is altered using cover crop species. We used five treatments ranging in diversity from one to five species consisting of continuous corn with no cover crop or one cover crop and corn-soy-wheat rotations with no cover, one cover or two cover crop species. We collected soils from four replicate plots of each treatment and measured the distribution of mega- (>2 mm), macro- (0.25-2 mm), and micro- (0.053-0.25 mm) aggregates. Within each aggregate size class, we also measured total soil C and N, permanganate oxidizable C (POXC), extracellular enzyme activities (EEA), and microbial community structure with phospholipid fatty acid (PLFA) analysis. We use these data to address the impacts of both rotational and cover crop diversity on soil physical structure, associated microbial community structure and activity and soil C storage. As spatial diversity increased, we found concurrent increases in mega-aggregate abundance as well as increasing soil C in the mega- and micro-aggregates but not macro-aggregates. The proportion of total soil C in each aggregate size class that is relatively labile (POXC) was highest in the micro-aggregates, as was enzyme activity associated with labile C acquisition across all levels of diversity. Enzyme activity associated with more recalcitrant forms of soil C was highest in the mega-aggregate class, also across all diversity levels; however, the ratio of labile to recalcitrant EEA increased with increasing diversity in the mega- and micro-aggregates. In addition, soil N increased with diversity such that microbial C:N EEA simultaneously decreased in mega-aggregates. We also found that cropping diversity has created distinctive soil microbial communities, highlighted by variation in the abundance of gram positive bacteria and Actinomycetes. Further research will help us determine how these changes in community structure with increasing diversity are related to concomitant changes in aggregation and enzyme activities. We suggest that the additional organic matter inputs from cover crops in the high diversity treatments have increased aggregation processes and C pools. While microbial activity has also increased in association with this increased C availability, the activity of recalcitrant and N-acquiring enzymes has declined, suggesting an overall decrease in SOM mineralization with possible increased SOM stabilization. The addition of crop species in rotation (temporal diversity) had minimal influence on any of the measured parameters. We thus conclude that spatial diversity is a more important driver of soil structure and microbial activity, likely due to the high quality organic matter inputs derived from the leguminous cover crops; however, spatial diversity alone did not lead to the same level of C storage potential as mixtures of temporal and spatial diversity.

Biodiversity of soil bacteria exposed to sub-lethal concentrations of phosphonium-based ionic liquids: Effects of toxicity and biodegradation.

PubMed

Sydow, Mateusz; Owsianiak, Mikołaj; Framski, Grzegorz; Woźniak-Karczewska, Marta; Piotrowska-Cyplik, Agnieszka; Ławniczak, Łukasz; Szulc, Alicja; Zgoła-Grześkowiak, Agnieszka; Heipieper, Hermann J; Chrzanowski, Łukasz

2018-01-01

Little is known about the effect of ionic liquids (ILs) on the structure of soil microbial communities and resulting biodiversity. Therefore, we studied the influence of six trihexyl(tetradecyl)phosphonium ILs (with either bromide or various organic anions) at sublethal concentrations on the structure of microbial community present in an urban park soil in 100-day microcosm experiments. The biodiversity decreased in all samples (Shannon's index decreased from 1.75 down to 0.74 and OTU's number decreased from 1399 down to 965) with the largest decrease observed in the microcosms spiked with ILs where biodegradation extent was higher than 80%. (i.e. [P 66614 ][Br] and [P 66614 ][2,4,4]). Despite this general decrease in biodiversity, which can be explained by ecotoxic effect of the ILs, the microbial community in the microcosms was enriched with Gram-negative hydrocarbon-degrading genera e.g. Sphingomonas. It is hypothesized that, in addition to toxicity, the observed decrease in biodiversity and change in the microbial community structure may be explained by the primary biodegradation of the ILs or their metabolites by the mentioned genera, which outcompeted other microorganisms unable to degrade ILs or their metabolites. Thus, the introduction of phosphonium-based ILs into soils at sub-lethal concentrations may result not only in a decrease in biodiversity due to toxic effects, but also in enrichment with ILs-degrading bacteria. Copyright © 2017 Elsevier Inc. All rights reserved.

Soil Structure - A Neglected Component of Land-Surface Models

NASA Astrophysics Data System (ADS)

Fatichi, S.; Or, D.; Walko, R. L.; Vereecken, H.; Kollet, S. J.; Young, M.; Ghezzehei, T. A.; Hengl, T.; Agam, N.; Avissar, R.

2017-12-01

Soil structure is largely absent in most standard sampling and measurements and in the subsequent parameterization of soil hydraulic properties deduced from soil maps and used in Earth System Models. The apparent omission propagates into the pedotransfer functions that deduce parameters of soil hydraulic properties primarily from soil textural information. Such simple parameterization is an essential ingredient in the practical application of any land surface model. Despite the critical role of soil structure (biopores formed by decaying roots, aggregates, etc.) in defining soil hydraulic functions, only a few studies have attempted to incorporate soil structure into models. They mostly looked at the effects on preferential flow and solute transport pathways at the soil profile scale; yet, the role of soil structure in mediating large-scale fluxes remains understudied. Here, we focus on rectifying this gap and demonstrating potential impacts on surface and subsurface fluxes and system wide eco-hydrologic responses. The study proposes a systematic way for correcting the soil water retention and hydraulic conductivity functions—accounting for soil-structure—with major implications for near saturated hydraulic conductivity. Modification to the basic soil hydraulic parameterization is assumed as a function of biological activity summarized by Gross Primary Production. A land-surface model with dynamic vegetation is used to carry out numerical simulations with and without the role of soil-structure for 20 locations characterized by different climates and biomes across the globe. Including soil structure affects considerably the partition between infiltration and runoff and consequently leakage at the base of the soil profile (recharge). In several locations characterized by wet climates, a few hundreds of mm per year of surface runoff become deep-recharge accounting for soil-structure. Changes in energy fluxes, total evapotranspiration and vegetation productivity are less significant but they can reach up to 10% in specific locations. Significance for land-surface and hydrological modeling and implications for distributed domains are discussed.

The influence of exogenous conditions on mobile measured gamma-ray spectrometry

NASA Astrophysics Data System (ADS)

Dierke, C.; Werban, U.; Dietrich, P.

2012-12-01

In the past, gamma ray measurements have been used for geological surveys and exploration using airborne and borehole logging systems. For these applications, the relationships between the measured physical parameter - the concentration of natural gamma emitters 40K, 238U and 232Th - and geological origin or sedimentary developments are well described. Based on these applications and knowledge in combination with adjusted sensor systems, gamma ray measurements are used to derive soil parameters to create detailed soil maps e.g., in digital soil mapping (DSM) and monitoring of soils. Therefore, not only qualitative but also quantitative comparability is necessary. Grain size distribution, type of clay minerals and organic matter content are soil parameters which directly influence the gamma ray emitter concentration. Additionally, the measured concentration is influenced by endogenous processes like soil moisture variation due to raining events, foggy weather conditions, or erosion and deposition of material. A time series of gamma ray measurements was used to observe changes in gamma ray concentration on a floodplain area in Central Germany. The study area is characterised by high variations in grain size distribution and occurrence of flooding events. For the survey, we used a 4l NaI(Tl) detector with GPS connection mounted on a sledge, which is towed across the field sites by a four-wheel-vehicle. The comparison of data from different time steps shows similar structures with minor variation between the data ranges and shape of structures. However, the data measured during different soil moisture contents differ in absolute value. An average increase of soil moisture of 36% leads to a decrease of Th (by 20%), K (by 29%), and U (by 41%). These differences can be explained by higher attenuation of radiation during higher soil moisture content. The different changes in nuclide concentration will also lead to varying ratios. We will present our experiences concerning the measurement under variable field conditions and their impacts on gamma ray data quality. These activities are done within the iSOIL project. iSOIL- Interactions between soil related sciences - Linking geophysics, soil science and digital soil mapping is a Collaborative Project (Grant Agreement number 211386) co-funded by the Research DG of the European Commission within the RTD activities of the FP7 Thematic Priority Environment; iSOIL is one member of the SOIL TECHNOLOGY CLUSTER of Research Projects funded by the EC.

Landslides of Palestinian Region

NASA Astrophysics Data System (ADS)

Alwahsh, H.

2013-12-01

Natural disasters are extreme sudden events caused by environmental and natural actors that take away the lives of many thousands of people each year and damage large amount of properties. They strike anywhere on earth, often without any warning. A risk maps of natural disaster are very useful to identify the places that might be adversely affected in the event of natural disaster. The earthquakes are one of natural disaster that have the greatest hazards and will cause loss of life and properties due to damaging the structures of building, dams, bridges. In addition, it will affect local geology and soil conditions. The site effects play an important role in earthquake risk because of its amplification or damping simulation. Another parameter in developing risk map is landslide, which is also one of the most important topics in site effect hazards. Palestine region has been suffering landslide hazards because of the topographical and geological conditions of this region. Most Palestine consists of mountainous area, which has great steep slopes and the type of soil is mainly grayish to yellowish silty clay (Marl Soil). Due to the above mentioned factors many landslides have been occurred from Negev south to the northern borders of Palestine. An example of huge and destruction landslide in a Palestine authority is the landslide in the White Mountain area in the city of Nablus, which occurred in 1997. The geotechnical and geophysical investigation as well as slope stability analysis should be considered in making landslide maps that are necessary to develop risk levels of the natural disaster. Landslides occurred in slopes that are created naturally or by human beings. Failure of soil mass occurs, and hence landslide of soil mass happen due to sliding of soil mass along a plane or curved surface. In general, the slopes become unstable when the shear stresses (driving force) generated in the soil mass exceed the available shearing resistance on the rupture surface. There are many factors which affect directly or indirectly the slope stability, the stability of a slope depends on the geometry and soil engineering properties which include geological, topography, climate, hydrologic conditions, weather and land use (human effects). There are many things that can be used to mitigate landslides disaster. The most important one is the control of the landslides by establishing landslide maps. Other methods such as geometrical, hydrological, mechanical and chemical methods would also be effective in mitigate landslides. Recently, due to the development of the technology in all aspects, a safe and economical design for slopes can be achieved easily.

The Vertical Structure of Urban Soils and Their Convergence Across Cities

NASA Astrophysics Data System (ADS)

Herrmann, D.; Schifman, L. A.; Shuster, W.; Schwarz, K.

2017-12-01

The theoretical patterns for vertical soil structure (e.g., A-B-C ordering of horizons) are a basis for research methods and our understanding of ecosystem structure and function in general. A general understanding of how urban soils differ from non-urban soils vertically is needed to inform urban research methods and advance our knowledge of urban ecosystems. We performed a soil taxonomic assessment of 391 deep soil cores (up to 5-m) collected in 11 cities across the U.S. and Puerto Rico. The likely soil series in the absence of urbanization was identified for each soil core and comparison soil taxonomy data for agricultural and wildlands land uses soils of the same soil series was gathered from the NASIS database. We hypothesized that urbanization has modified the vertical arrangement of soil horizons and decreased their vertical complexity (e.g., degree of horizonation). In addition, we hypothesized that soils in each city are becoming more like each other and less like their pre-urbanization soils. Urban soils had fewer soil horizons than their non-urban references; specifically, urban soils had two fewer distinct genetic horizons in the top meter of soil. B horizons were commonly lost or reduced in extent as A horizons deepened and C horizons shallowed in urban relative to reference soils. The order of horizons was also different from reference and theoretical soil structure. Namely A-C transitions with an absence of B horizons was more common in urban than non-urban soils. If these patterns hold across more cities, our results indicate a need to revisit the conventional predictions of vertical soil structure for understanding urban ecosystems. Finally, we found that several attributes for urban soils with evidence of significant disturbance associated with urbanization were converging across cities. Similar findings have been found for surface soils; here we show the structure of urban soil convergence at greater soil depths than previously reported.

Links between Soil Fungal Diversity and Plant and Soil Properties on the Loess Plateau

PubMed Central

Yang, Yang; Dou, Yanxing; Huang, Yimei; An, Shaoshan

2017-01-01

Previous studies have revealed inconsistent correlations between fungal diversity and plant/soil properties from local to global scales. Here, we investigated the internal relationships between soil fungal diversity and plant/soil properties on the Loess Plateau following vegetation restoration, using Illumina sequencing of the internal transcribed spacer 2 (ITS2) region for fungal identification. We found significant effects of land use types (Af, Artificial forest; Ns, Natural shrub; Ag, Artificial grassland; Ng, Natural grassland; Sc, slope cropland) on soil fungal communities composition, and the dominant phyla were Ascomycota, Basidiomycota, and Zygomycota, which transitioned from Basidiomycota-dominant to Ascomycota-dominant community due to vegetation restoration. The Chao1 richness, Shannon’s diversity and ACE indices were significantly influenced by land use types with the order of Ns > Af > Ng > Ag > Sc, and the total number of OTUs varied widely. In contrast, Good’s coverage and Simpson’s diversity indicated no significant difference among land use types (p > 0.05). Correlation analysis showed that plant and soil properties were closely related to fungal diversity regardless of land use types. In addition, soil organic carbon (SOC) and Hplant (plant richness, Shannon-Wiener index) were strong driving factors that explained fungal diversity. As revealed by the structural equation model (SEM) and generalized additive models (GAMs), fungal diversity was directly and indirectly affected by soil and plant properties, respectively, providing evidence for strong links between soil fungal diversity and plant and soil properties on the Loess Plateau. PMID:29163460

Links between Soil Fungal Diversity and Plant and Soil Properties on the Loess Plateau.

PubMed

Yang, Yang; Dou, Yanxing; Huang, Yimei; An, Shaoshan

2017-01-01

Previous studies have revealed inconsistent correlations between fungal diversity and plant/soil properties from local to global scales. Here, we investigated the internal relationships between soil fungal diversity and plant/soil properties on the Loess Plateau following vegetation restoration, using Illumina sequencing of the internal transcribed spacer 2 (ITS2) region for fungal identification. We found significant effects of land use types (Af, Artificial forest; Ns, Natural shrub; Ag, Artificial grassland; Ng, Natural grassland; Sc, slope cropland) on soil fungal communities composition, and the dominant phyla were Ascomycota, Basidiomycota , and Zygomycota , which transitioned from Basidiomycota -dominant to Ascomycota -dominant community due to vegetation restoration. The Chao1 richness, Shannon's diversity and ACE indices were significantly influenced by land use types with the order of Ns > Af > Ng > Ag > Sc, and the total number of OTUs varied widely. In contrast, Good's coverage and Simpson's diversity indicated no significant difference among land use types ( p > 0.05). Correlation analysis showed that plant and soil properties were closely related to fungal diversity regardless of land use types. In addition, soil organic carbon (SOC) and H plant (plant richness, Shannon-Wiener index) were strong driving factors that explained fungal diversity. As revealed by the structural equation model (SEM) and generalized additive models (GAMs), fungal diversity was directly and indirectly affected by soil and plant properties, respectively, providing evidence for strong links between soil fungal diversity and plant and soil properties on the Loess Plateau.

Guided wave propagation in single and double layer hollow cylinders embedded in infinite media.

PubMed

Jia, Hua; Jing, Mu; Joseph, L Rose

2011-02-01

Millions of miles of pipes are being used for the transportation, distribution, and local use of petroleum products, gas, water, and chemicals. Most of the pipes are buried in soil, leading to the significance of the study on the subject of guided wave propagation in pipes with soil influence. Previous investigations of ultrasonic guided wave propagation in an elastic hollow cylinder and in an elastic hollow cylinder coated with a viscoelastic material have led to the development of inspection techniques for bare and coated pipes. However, the lack of investigation on guided wave propagation in hollow cylinders embedded in infinite media like soil has hindered the development of pipe inspection methods. Therefore the influence of infinite media on wave propagation is explored in this paper. Dispersion curves and wave structures of both axisymmetric and nonaxisymmetric wave modes are developed. Due to the importance of the convergence of numerical calculations, the requirements of thickness and element number of the finite soil layer between hollow cylinder and infinite element layer are discussed, and an optimal combination is obtained in this paper. Wave structures are used for the mode identification in the non-monotonic region caused by the viscoelastic properties of coating and infinite media.

Evaluating the effectiveness of the MASW technique in a geologically complex terrain

NASA Astrophysics Data System (ADS)

Anukwu, G. C.; Khalil, A. E.; Abdullah, K. B.

2018-04-01

MASW surveys carried at a number of sites in Pulau Pinang, Malaysia, showed complicated dispersion curves which consequently made the inversion into soil shear velocity model ambiguous. This research work details effort to define the source of these complicated dispersion curves. As a starting point, the complexity of the phase velocity spectrum is assumed to be due to either the surveying parameters or the elastic properties of the soil structures. For the former, the surveying was carried out using different parameters. The complexities were persistent for the different surveying parameters, an indication that the elastic properties of the soil structure could be the reason. In order to exploit this assumption, a synthetic modelling approach was adopted using information from borehole, literature and geologically plausible models. Results suggest that the presence of irregular variation in the stiffness of the soil layers, high stiffness contrast and relatively shallow bedrock, results in a quite complex f-v spectrum, especially at frequencies lower than 20Hz, making it difficult to accurately extract the dispersion curve below this frequency. As such, for MASW technique, especially in complex geological situations as demonstrated, great care should be taken during the data processing and inversion to obtain a model that accurately depicts the subsurface.

A multi-scale ''soil water structure'' model based on the pedostructure concept

NASA Astrophysics Data System (ADS)

Braudeau, E.; Mohtar, R. H.; El Ghezal, N.; Crayol, M.; Salahat, M.; Martin, P.

2009-02-01

Current soil water models do not take into account the internal organization of the soil medium and, a fortiori, the physical interaction between the water film surrounding the solid particles of the soil structure, and the surface charges of this structure. In that sense they empirically deal with the physical soil properties that are all generated from this soil water-structure interaction. As a result, the thermodynamic state of the soil water medium, which constitutes the local physical conditions, namely the pedo-climate, for biological and geo-chemical processes in soil, is not defined in these models. The omission of soil structure from soil characterization and modeling does not allow for coupling disciplinary models for these processes with soil water models. This article presents a soil water structure model, Kamel®, which was developed based on a new paradigm in soil physics where the hierarchical soil structure is taken into account allowing for defining its thermodynamic properties. After a review of soil physics principles which forms the basis of the paradigm, we describe the basic relationships and functionality of the model. Kamel® runs with a set of 15 soil input parameters, the pedohydral parameters, which are parameters of the physically-based equations of four soil characteristic curves that can be measured in the laboratory. For cases where some of these parameters are not available, we show how to estimate these parameters from commonly available soil information using published pedotransfer functions. A published field experimental study on the dynamics of the soil moisture profile following a pounded infiltration rainfall event was used as an example to demonstrate soil characterization and Kamel® simulations. The simulated soil moisture profile for a period of 60 days showed very good agreement with experimental field data. Simulations using input data calculated from soil texture and pedotransfer functions were also generated and compared to simulations of the more ideal characterization. The later comparison illustrates how Kamel® can be used and adapt to any case of soil data availability. As physically based model on soil structure, it may be used as a standard reference to evaluate other soil-water models and also pedotransfer functions at a given location or agronomical situation.

Differentiate responses of soil structure to natural vegetation and artificial plantation in landslide hazard region of the West Qinling Mountains, China

NASA Astrophysics Data System (ADS)

Wang, X.; Huang, Z.; Zhao, Y.; Hong, M.

2017-12-01

Natural vegetation and artificial plantation are the most important measures for ecological restoration in soil erosion and landslide hazard-prone regions of China. Previous studies have demonstrated that both measures can significantly change the soil structure and decrease soil and water erosion. Few reports have compared the effects of the two contrasting measures on mechanical and hydrological properties and further tested the differentiate responses of soil structure. In the study areas, two vegetation restoration measures-natural vegetation restoration (NVR) and artificial plantation restoration (APR) compared with control site, with similar topographical and geological backgrounds were selected to investigate the different effects on soil structure based on eight-year ecological restoration projects. The results showed that the surface vegetation played an important role in releasing soil erosion and enhance soil structure stability through change the soil aggregates (SA) and total soil porosity (TSP). The SA<0.25mm content in NVR (36.13%) was higher than that in APR (32.14%). The study indicated that SA and TSP were the principal components (PCs) related to soil structure variation. Soil organic carbon, soil water retention, clay and vegetation biomass were more strongly correlated with the PCs in NVR than those in APR. The study indicated that NVR was more beneficial for soil structure stability than APR. These findings will provide a theoretical basis for the decisions around reasonable land use for ecological restoration and conservation in geological hazard-prone regions.

40 CFR 265.114 - Disposal or decontamination of equipment, structures and soils.

Code of Federal Regulations, 2010 CFR

2010-07-01

... equipment, structures and soils. 265.114 Section 265.114 Protection of Environment ENVIRONMENTAL PROTECTION... decontamination of equipment, structures and soils. During the partial and final closure periods, all contaminated equipment, structures and soil must be properly disposed of, or decontaminated unless specified otherwise in...

40 CFR 267.116 - What must I do with contaminated equipment, structure, and soils?

Code of Federal Regulations, 2014 CFR

2014-07-01

... equipment, structure, and soils? 267.116 Section 267.116 Protection of Environment ENVIRONMENTAL PROTECTION..., structure, and soils? You must properly dispose of or decontaminate all contaminated equipment, structures, and soils during the partial and final closure periods. By removing any hazardous wastes or hazardous...

40 CFR 265.114 - Disposal or decontamination of equipment, structures and soils.

Code of Federal Regulations, 2012 CFR

2012-07-01

... equipment, structures and soils. 265.114 Section 265.114 Protection of Environment ENVIRONMENTAL PROTECTION... decontamination of equipment, structures and soils. During the partial and final closure periods, all contaminated equipment, structures and soil must be properly disposed of, or decontaminated unless specified otherwise in...

40 CFR 267.116 - What must I do with contaminated equipment, structure, and soils?

Code of Federal Regulations, 2010 CFR

2010-07-01

... equipment, structure, and soils? 267.116 Section 267.116 Protection of Environment ENVIRONMENTAL PROTECTION..., structure, and soils? You must properly dispose of or decontaminate all contaminated equipment, structures, and soils during the partial and final closure periods. By removing any hazardous wastes or hazardous...

40 CFR 265.114 - Disposal or decontamination of equipment, structures and soils.

Code of Federal Regulations, 2011 CFR

2011-07-01

... equipment, structures and soils. 265.114 Section 265.114 Protection of Environment ENVIRONMENTAL PROTECTION... decontamination of equipment, structures and soils. During the partial and final closure periods, all contaminated equipment, structures and soil must be properly disposed of, or decontaminated unless specified otherwise in...

40 CFR 265.114 - Disposal or decontamination of equipment, structures and soils.

Code of Federal Regulations, 2013 CFR

2013-07-01

... equipment, structures and soils. 265.114 Section 265.114 Protection of Environment ENVIRONMENTAL PROTECTION... decontamination of equipment, structures and soils. During the partial and final closure periods, all contaminated equipment, structures and soil must be properly disposed of, or decontaminated unless specified otherwise in...

40 CFR 267.116 - What must I do with contaminated equipment, structure, and soils?

Code of Federal Regulations, 2012 CFR

2012-07-01

... equipment, structure, and soils? 267.116 Section 267.116 Protection of Environment ENVIRONMENTAL PROTECTION..., structure, and soils? You must properly dispose of or decontaminate all contaminated equipment, structures, and soils during the partial and final closure periods. By removing any hazardous wastes or hazardous...

40 CFR 267.116 - What must I do with contaminated equipment, structure, and soils?

Code of Federal Regulations, 2013 CFR

2013-07-01

... equipment, structure, and soils? 267.116 Section 267.116 Protection of Environment ENVIRONMENTAL PROTECTION..., structure, and soils? You must properly dispose of or decontaminate all contaminated equipment, structures, and soils during the partial and final closure periods. By removing any hazardous wastes or hazardous...

40 CFR 265.114 - Disposal or decontamination of equipment, structures and soils.

Code of Federal Regulations, 2014 CFR

2014-07-01

... equipment, structures and soils. 265.114 Section 265.114 Protection of Environment ENVIRONMENTAL PROTECTION... decontamination of equipment, structures and soils. During the partial and final closure periods, all contaminated equipment, structures and soil must be properly disposed of, or decontaminated unless specified otherwise in...

40 CFR 267.116 - What must I do with contaminated equipment, structure, and soils?

Code of Federal Regulations, 2011 CFR

2011-07-01

... equipment, structure, and soils? 267.116 Section 267.116 Protection of Environment ENVIRONMENTAL PROTECTION..., structure, and soils? You must properly dispose of or decontaminate all contaminated equipment, structures, and soils during the partial and final closure periods. By removing any hazardous wastes or hazardous...

Fate of Zinc Oxide Nanoparticles Coated onto Macronutrient Fertilizers in an Alkaline Calcareous Soil

PubMed Central

Milani, Narges; Hettiarachchi, Ganga M.; Kirby, Jason K.; Beak, Douglas G.; Stacey, Samuel P.; McLaughlin, Mike J.

2015-01-01

Zinc oxide (ZnO) nanoparticles may provide a more soluble and plant available source of Zn in Zn fertilizers due to their greater reactivity compared to equivalent micron- or millimetre-sized (bulk) particles. However, the effect of soil on solubility, spatial distribution and speciation of ZnO nanoparticles has not yet been investigated. In this study, we examined the diffusion and solid phase speciation of Zn in an alkaline calcareous soil following application of nanoparticulate and bulk ZnO coated fertilizer products (monoammonium phosphate (MAP) and urea) using laboratory-based x-ray techniques and synchrotron-based μ-x-ray fluorescence (μ–XRF) mapping and absorption fine structure spectroscopy (μ–XAFS). Mapping of the soil-fertilizer reaction zones revealed that most of the applied Zn for all treatments remained on the coated fertilizer granule or close to the point of application after five weeks of incubation in soil. Zinc precipitated mainly as scholzite (CaZn2(PO4)2.2H2O) and zinc ammonium phosphate (Zn(NH4)PO4) species at the surface of MAP granules. These reactions reduced dissolution and diffusion of Zn from the MAP granules. Although Zn remained as zincite (ZnO) at the surface of urea granules, limited diffusion of Zn from ZnO-coated urea granules was also observed for both bulk and nanoparticulate ZnO treatments. This might be due to either the high pH of urea granules, which reduced solubility of Zn, or aggregation (due to high ionic strength) of released ZnO nanoparticles around the granule/point of application. The relative proportion of Zn(OH)2 and ZnCO3 species increased for all Zn treatments with increasing distance from coated MAP and urea granules in the calcareous soil. When coated on macronutrient fertilizers, Zn from ZnO nanoparticles (without surface modifiers) was not more mobile or diffusible compared to bulk forms of ZnO. The results also suggest that risk associated with the presence of ZnO NPs in calcareous soils would be the same as bulk sources of ZnO. PMID:25965385

Carbon Balance in an Olive Orchard of SE Spain: Influence of Weed Cover

NASA Astrophysics Data System (ADS)

Sanchez-Canete, E. P.; Chamizo, S.; Serrano-Ortiz, P.; Lopez-Ballesteros, A.; Vicente-Vicente, J. L.; Kowalski, A. S.

2016-12-01

Agriculture is largely responsible for greenhouse gas emissions due to deforestation, land use changes and inadequate practices. High carbon (C) losses in agricultural lands caused by inadequate soil management entail a reduction of their C sequestration capacity and make agriculture more vulnerable to climate change impact. However, this trend can be potentially reversed if adequate agricultural practices are applied. Olive trees are one of the most widespread crops in the Mediterranean region, especially in Spain. Due to climate characteristics of the Mediterranean region and soils characterized by poor structure and low organic matter content, these crops are subject to environmental problems including erosion, soil compaction, and the loss of soil fertility that, indeed, can be aggravated by conventional practices such as intensive tillage. No-till agriculture and maintenance of the spontaneous resident vegetation cover (hereinafter, "weeds") have been applied in olive orchards in order to reduce erosion and increase soil organic C content. However, the role of these conservation practices in C balance at ecosystem scale has not been assessed so far. In this study, we analyzed the influence of weeds against weed removal via herbicide application on the net ecosystem CO2 exchange (NEE) in an olive orchard in Jaén (SE Spain), by using two eddy covariance towers during the hydrological year 2014-2015. We found that the presence of weeds increased net C uptake during winter and early spring. However, after weeds were mowed in April and kept on the soil, net C uptake decreased in this treatment due to an increase in soil respiration. Despite the lower net C uptake observed during late spring, the presence of weeds increased C fixation at annual scale. During the year of study, the weed removal practice decreased C uptake by 50% compared to the olive orchard where weeds were kept. We conclude that maintenance of weeds in olive groves has a positive effect on CO2 sequestration and enhances the capacity of this agro-system to act as a net CO2 sink.

Effect of the slope and initial moisture content on soil loss, aggregate and particle size distribution

NASA Astrophysics Data System (ADS)

Szabó, Judit Alexandra; Jakab, Gergely; Szabó, Boglárka

2015-04-01

Soil structure degradation has effect through the soil water balance and nutrient supply on the agricultural potential of an area. The soil erosion process comprises two phases: detachment and transport by water. To study the transport phase nozzle type laboratory-scale rainfall simulator was used with constant 80 mmhr-1 intensity on an arable haplic Cambisol. Measuring the aggregate and particle size distribution of the soil loss gives a good approach the erosion process. The primary objective of this study was to examine the sediment concentration, and detect the quality and quantity change of the soil loss during a single precipitation under six treatment combinations (recently tilled and crusty soil surface on two different slope steepness, inland inundation and drought soil conditions). Soil loss were collected continually, and separated per aggregate size fractions with sieves in three rounds during a rain to measure the weights. The particle size distribution was measured with Horiba LA-950 particle size analyzer. In general the ratio of the macro aggregates decreases and the ratio of the micro aggregates and clay fraction increases in the sediment with time during the precipitation due to the raindrop impact. Sediment concentration depends on the slope steepness, as from steeper slopes the runoff can transport bigger amount of sediment, but from the tilled surface bigger aggregates were washing down. Micro aggregate fraction is one of the indicators of good soil structure. The degradation of micro aggregates occurs in steeper slopes and the most erosive time period depends on the micromorphology of the surface. And while the aggregate size distribution of the soil loss of the treatments shows high variety of distribution and differs from the original soil, the particle size distribution of each aggregate size fraction shows similar trends except the 50-250 µm fraction where the fine sand fraction is dominating instead of the loam. This anomaly may be connected with the TC content of this fraction, but more research is needed. In agricultural areas micro aggregate fraction plays important role in nutrient supply thus understanding the erosion process is necessary because of the better protection in the future.

Western Juniper Field Guide: Asking the Right Questions to Select Appropriate Management Actions

USGS Publications Warehouse

Miller, R.F.; Bates, J.D.; Svejcar, T.J.; Pierson, F.B.; Eddleman, L.E.

2007-01-01

Introduction Strong evidence indicates that western juniper has significantly expanded its range since the late 1800s by encroaching into landscapes once dominated by shrubs and herbaceous vegetation (fig. 1). Woodland expansion affects soil resources, plant community structure and composition, water, nutrient and fire cycles, forage production, wildlife habitat, and biodiversity. Goals of juniper management include an attempt to restore ecosystem function and a more balanced plant community that includes shrubs, grasses, and forbs, and to increase ecosystem resilience to disturbances. Developing a management strategy can be a difficult task due to uncertainty about how vegetation, soils, hydrologic function, and wildlife will respond to treatments.

Sorption of Cu and Zn in low organic matter-soils as influenced by soil properties and by the degree of soil weathering.

PubMed

Antoniadis, V; Golia, E E

2015-11-01

Copper and Zn sorption and desorption, among other factors, depend on soil pH, but in soils with different degree of weathering the role of other soil properties (e.g., oxides content and the level of their crystallinity) has not been thoroughly examined. We conducted batch sorption and desorption tests using 21 low-organic C soils that belonged to the soil orders of Entisols, newly developed soils, Inceptisols, and Alfisols, the most weathered soils. Zinc sorption was lower than that of Cu, and its desorption faster, confirming that it is a highly mobile metal. Alfisols had the weaker affinity for metals, due to the lower soil pH typical of this soil order, but also due to the low reactivity colloids they contained. Correlation analyses showed that Fe oxides in Alfisols increased metal release from soils, while they decreased metal desorption from Entisols. We conclude that in low organic matter-content soils, where the protective role of organic colloids is not to be expected, high soil pH alone is not sufficient to protect against metal contamination, but the degree of soil weathering is also important, due to the dominant role of other mineral phases (here, Fe oxides). Copyright © 2015 Elsevier Ltd. All rights reserved.

Soils are sensitive reactors - do we need a paradigm change towards a more sustainable soil use?

NASA Astrophysics Data System (ADS)

Horn, Rainer; Holthusen, Dörthe

2015-04-01

The aim of the lecture is to clarify the effect of soil management and the consequences of physical degradation on processes like soil aggregation and changes in the accessibility and functionality of structured soils. If due to soil management strategies the internal soil strength will be exceeded by external stresses applied not only the available pore space is reduced while the solid mass is increased but especially the pore continuity and the accessibility of exchange places for nutrients or heavy metals are altered. In addition, the root distribution in soils becomes not only reduced but also unevenly distributed which again hinders the possibility to evenly uptake plant available water and nutrient out of the pores. The applied stresses also create an anisotropic arrangement of the pores and their functions and also result in a more pronounced lateral mass transport by surface runoff including soil erosion by water and wind. Thus, also the water balance on all scales (from the pedon to the catchment) shows an increased water loss by evaporation and surface water while the groundwater recharge and the transpiration rates are reduced. If we analyze the scale dependency of nutrient adsorption and desorption phenomena it has to be stated, that the accessibility of exchange places within soil aggregates are the better the more structured and the more rigid these aggregates are, while with increasing mechanical stress applied aggregates are deformed and as a consequences they become less porous with a severe differentiation between the outer and the inner part of the aggregate volume. On the bulk soil scale, we can analyze the platy structure as a visible hint for anthropogenic soil degradation which affects amongst others also the ion exchange processes. Furthermore an uneven aeration within such degraded soils results in a very pronounced anoxia on all scales (from the aggregate to the hectare scale) which can be quantified not only by corresponding measurements of the spatial distribution of redox potential values. In recent studies under "normal" wheeling conditions in arable fields and also in harvested forest sites it was proofed that Eh values close to 0 mV or even a methane emission have to be expected (with consequences for the global warming). Finally anoxic conditions also affect the redox induced mobilization of Fe and Mn which even results in a more rapid soil development with consequences also for yield and further soil functions. Consequently a shift to a more sustainable landuse or soil management strategy is urgently requested in order to prevent a further soil degradation. The scenario of peak soil must and can be prevented by a more site specific soil management. In the lecture, these effects will be discussed as well as a soil protection guide line (based on the German soil protection law) will be presented in order to prevent further irreversible soil degradation phenomena. Keywords: mechanical strength, mechanical stress and strain effects soil degradation, pore functions, ad-/desorption processes, redox potential, anoxia;, global change

Landuse legacies of old-field succession and soil structure at the Calhoun Criticl Zone Observatory in SC, USA.

NASA Astrophysics Data System (ADS)

Brecheisen, Z. S.; Richter, D. D., Jr.; Callaham, M.; Carrera-Martinez, R.; Heine, P.

2017-12-01

The pre-colonial Southern Piedmont was an incredibly stable CZ with erosion rates between 0.35-3m/Myr on a 4th order interfluve. With soils and saprolite weathered up to 30m in total depth bedrock with multi-million year residence times under continual forest cover prior to widespread agricultural disturbance. With this biogeomorphic stability came time for soil macroporosity and soil structure to be established and maintained by the activities of soil fauna, plant root growth and death, and tree-fall tip-up events serving to continually mix and aerate the soil. Greatly accelerated surficial agricultural erosion (ca. 1750-1930) has fundamentally altered the Calhoun Critical Zone Observatory forest community dynamics aboveground and the soil structure, hydrology, and biogeochemistry belowground. The arrival of the plow to the Southern Piedmont marked the destruction of soil structure, macropore networks, and many of the macroinvertebrate soil engineers. This transformation came via forest clearing, soil tilling, compaction, and wholesale soil erosion, with the region having lost an estimated average of 18cm of soil across the landscape. In the temporal LULC progression from hardwood forests, to cultivated farms, to reforestation, secondary forest soil structure is expected to remain altered compared to the reference hardwood ecosystems. The research presented herein seeks to quantify CZ soil structure regeneration in old-field pine soil profiles' Ksat, aggregation, texture, macro-invertebrates, and direct measurements of topsoil porosity using X-ray computed tomography analysis on 15cm soil cores.

Bioremediation of diesel contamination at an underground storage tank site: a spatial analysis of the microbial community.

PubMed

Andreolli, Marco; Albertarelli, Nicola; Lampis, Silvia; Brignoli, Pierlorenzo; Khoei, Nazaninalsadat Seyed; Vallini, Giovanni

2016-01-01

The present study reports on a real case of contamination due to the chronic leakage of diesel fuel from an underground tank at a dismissed service station. Speciation of the microbial community according to both lateral and vertical gradients from the origin of the contaminant release was analyzed by means of the PCR-DGGE technique. Moreover, the effects of a landfarming treatment on both the microbial community structure and the abatement of contamination were analyzed. The concentration of total petrol hydrocarbons (TPHs) decreased along the horizontal gradient (from 7042.2 ± 521.9 to 112.2 ± 24.3 mg kg(-1)), while increased downwards from the position of the tank (from 502.6 ± 43.7 to 4972.5 ± 275.3 mg kg(-1)). PCR-DGGE analyses and further statistical treatment of the data indicated a correlation between structure of the bacterial communities and amount of diesel fuel contamination. On the other hand, level of contamination, soil texture and depth were shown to affect the fungal community. Chloroflexi and Ascomycota were the most abundant microbes ascertained through culture-independent procedures. Landfarming promoted 91.6 % reduction of TPHs in 75 days. Furthermore, PCR-DGGE analyses evidenced that both bacterial and fungal communities of the treated soil were restored to the pristine conditions of uncontaminated topsoil. The present study demonstrated that bacterial and fungal communities were affected differently by soil factors such as level of hydrocarbon contamination as well as soil depth and texture. This report shows that a well-planned landfarming treatment can drive the restoration of the soil in terms of both abatement of the contaminants and resilience of the microbial community structure.

Effect of aggregation on SOC transport: linking soil properties to sediment organic matter

NASA Astrophysics Data System (ADS)

Kuhn, Nikolaus J.

2016-04-01

Soils are an interface between the Earth's spheres and shaped by the nature of the interaction between them. The relevance of soil properties for the nature of the interaction between atmosphere, hydrosphere and biosphere is well-studied and accepted, on point- or ecotone-scale. However, this understanding of the largely vertical connections between spheres is not matched by a similar recognition of soil properties affecting processes acting largely in a lateral way across the land surface, such as erosion, transport and deposition of soil and the associated organic matter. Understanding the redistribution of eroded soil organic matter falls into several disciplines, most notably soil science, agronomy, hydrology and geomorphology, and recently into biogeochemistry. Accordingly, the way soil and sediment are described differs: in soil science, aggregation and structure are essential properties, while most process-based soil erosion models treat soil as a mixture of individual mineral grains, based on concepts derived in fluvial geomorphology or civil engineering. The actual behavior of aggregated sediment and the associated organic matter is not reflected by either approach and difficult to capture due to the dynamic nature of aggregation, especially in an environment such as running water. Still, a proxy to assess the uncertainties introduced by aggregation on the behavior of soil/sediment organic while moving in water across landscapes and into the aquatic system would represent a major step forward. To develop such a proxy, a database collating relevant soil, organic matter and sediment properties could serve as an initial step to identify which soil types and erosion scenarios are prone to generate a high uncertainty compared to the use of soil texture in erosion models. Furthermore, it could serve to develop standardized analytical procedures for appropriate description of soil and organic matter as sediment.

Method for analyzing soil structure according to the size of structural elements

NASA Astrophysics Data System (ADS)

Wieland, Ralf; Rogasik, Helmut

2015-02-01

The soil structure in situ is the result of cropping history and soil development over time. It can be assessed by the size distribution of soil structural elements such as air-filled macro-pores, aggregates and stones, which are responsible for important water and solute transport processes, gas exchange, and the stability of the soil against compacting and shearing forces exerted by agricultural machinery. A method was developed to detect structural elements of the soil in selected horizontal slices of soil core samples with different soil structures in order for them to be implemented accordingly. In the second step, a fitting tool (Eureqa) based on artificial programming was used to find a general function to describe ordered sets of detected structural elements. It was shown that all the samples obey a hyperbolic function: Y(k) = A /(B + k) , k ∈ { 0 , 1 , 2 , … }. This general behavior can be used to develop a classification method based on parameters {A and B}. An open source software program in Python was developed, which can be downloaded together with a selection of soil samples.

Geotechnical consulting at the stages of design and full repair: A case study of village school in Minusinsk region, Russia

NASA Astrophysics Data System (ADS)

Khalimov, Oleg; Strelnikov, Dmitry

2017-11-01

The article provides an experimental material showing an investigation of soil under the foundations base of a dangerous block of the building. The investigation was carried out by applying load from a stamp on the soil with a jack supporting the foundation base of the deformed building. There were originally offered two options to strengthen the foundation - a broader base and improvement of the soil with the plate. However, quite a different option was accepted due to the full scale tests. The effective way to strengthen the foundation is measures undertaken without strengthening the soil and without increasing the width of the base, using the actual soil with deformations stabilized for years of operation. The strengthening of the bearing brick walls was made by tightening the main face laying with steel channel profiles to make a firm contact with the foundations. The conducted investigation is an example of geotechnical consulting and improvement of the geotechnical maintenance of dangerous structures at the stages of investigation, design and reconstruction.

Phytostabilization of Mining Soils By the Plant Anthyllis Vulneraria: A Micro-XRF and XAS Study

NASA Astrophysics Data System (ADS)

Isaure, M. P.

2014-12-01

Mine tailings are typical highly metal contaminated areas with very scarce vegetation. They are affected by intensive rain and wind erosion processes, thus representing a source of environmental and health hazard. Due to their large area and high level of contamination, conventional remediation techniques are not appropriate, and phytostabilization has emerged as an alternative technique during the last decade. The legume plant Anthyllis vulneraria has been identified as a pionner plant to revegetalize mining sites from South of France where an experimental site has been set up for 10 years. Our objective was to clarify the role of Anthyllis vulneraria in the distribution and speciation of Cd and Zn in the soil. For that, we used a combination of micro X-ray fluorescence (μXRF) and micro X-ray Absorption Near Edge Structure spectroscopy (μXANES) combined to Extended X-ray Absorption Fine Structure spectroscopy (EXAFS). Results showed that the vegetation process had homogeneized the metal distribution in the soil compared to unvegetalized soil, and had decreased the Zn and Cd amount in the surface soil. Undisturbed cross-sections of soils showed that the top of the rhizosphere was highly enriched with organic matter after 10 years of vegetalization. Cd and Zn forms, mainly identified as CdCO3 and ZnCO3 in the unvegetalized soil, did not change significantly in the bulk rhizosphere but investigations at the micrometer scale allowed the identification of Cd and Zn organic phases in the upper part, probably related to the shoots decomposition, and thus to the organic matter recycling. At the close vicinity of the roots, some minor organic metallic forms were found whilst CdCO3 and ZnCO3 minerals were still present, thus highlighting the low direct impact of the roots in the soil. Finally, this study indicated that the direct impact of the plant on Cd and Zn speciation in the soil was weak, while an indirect effect resulting from shoots decomposition could be observed.

Seasonal induced changes in spinach rhizosphere microbial community structure with varying salinity and drought.

PubMed

Mark Ibekwe, A; Ors, Selda; Ferreira, Jorge F S; Liu, Xuan; Suarez, Donald L

2017-02-01

Salinity is a common problem under irrigated agriculture, especially in low rainfall and high evaporative demand areas of southwestern United States and other semi-arid regions around the world. However, studies on salinity effects on soil microbial communities are relatively few while the effects of irrigation-induced salinity on soil chemical and physical properties and plant growth are well documented. In this study, we examined the effects of salinity, temperature, and temporal variability on soil and rhizosphere microbial communities in sand tanks irrigated with prepared solutions designed to simulate saline wastewater. Three sets of experiments with spinach (Spinacia oleracea L., cv. Racoon) were conducted under saline water during different time periods (early winter, late spring, and early summer). Bacterial 16S V4 rDNA region was amplified utilizing fusion primers designed against the surrounding conserved regions using MiSeq® Illumina sequencing platform. Across the two sample types, bacteria were relatively dominant among three phyla-the Proteobacteria, Cyanobacteria, and Bacteroidetes-accounted for 77.1% of taxa detected in the rhizosphere, while Proteobacteria, Bacteroidetes, and Actinobacteria accounted for 55.1% of taxa detected in soil. The results were analyzed using UniFrac coupled with principal coordinate analysis (PCoA) to compare diversity, abundance, community structure, and specific bacterial groups in soil and rhizosphere samples. Permutational analysis of variance (PERMANOVA) analysis showed that soil temperature (P=0.001), rhizosphere temperature (P=0.001), rhizosphere salinity (P=0.032), and evapotranspiration (P=0.002) significantly affected beta diversity of soil and rhizosphere microbial communities. Furthermore, salinity had marginal effects (P=0.078) on soil beta diversity. However, temporal variability differentially affected rhizosphere microbial communities irrigated with saline wastewater. Therefore, microbial communities in soils impacted by saline irrigation water respond differently to irrigation water quality and season of application due to temporal effects associated with temperature. Published by Elsevier B.V.

Soil-Structural Stability as Affected by Clay Mineralogy, Soil Texture and Polyacrylamide Application

USDA-ARS?s Scientific Manuscript database

Soil-structural stability (expressed in terms of aggregate stability and pore size distribution) depends on (i) soil inherent properties, (ii) extrinsic condition prevailing in the soil that may vary temporally and spatially, and (iii) addition of soil amendments. Different soil management practices...

Microzonation Studies In District of Dikili, Izmir (Turkey) In The Context of Social Responsibility by Using GIS Tecniques

NASA Astrophysics Data System (ADS)

Karabulut, Savas; Cinku, Mualla; Tezel, Okan; Hisarli, Mumtaz; Ozcep, Ferhat; Tun, Muammer; Avdan, Ugur; Ozel, Oguz; Acikca, Ahmet; Aygordu, Ozan; Benli, Aral; Kesisyan, Arda; Yilmaz, Hakan; Varici, Cagri; Ozturkan, Hasan; Ozcan, Cuneyt; Kivrak, Ali

2015-04-01

Social Responsibility Projects (SRP) are important tools in contributing to the development of communities and applied educational science. Researchers dealing with engineering studies generally focus on technical specifications. However, when the subject depends on earthquake, engineers should be consider also social and educational components, besides the technical aspects. If scientific projects collaborated with municipalities of cities, it should be known that it will reach a wide range of people. Turkey is one of the most active region that experienced destructive earthquakes. The 1999 Marmara earthquake was responsible for the loose of more than 18.000 people. The destructive damage occurred on buildings that made on problematic soils. This however, is still the one of most important issues in Turkey which needs to be solved. Inspite of large earthquakes that occurred along the major segments of the North and East Anatolian Fault Zones due to the northwards excursion of Anatolia, the extensional regime in the Aegean region is also characterized by earthquakes that occurred with the movement of a number of strike slip and normal faults. The Dikili village within the Eastern Aegean extensional region experienced a large earthquake in 1939 (M: 6.8). The seismic activity is still characterised by high level and being detected. A lot of areas like the Kabakum village have been moved to its present location during this earthquake. The probability of an earthquake hazard in Dikili is considerably high level, today. Therefore, it is very important to predict the soil behaviour and engineering problems by using Geographic Information System (GIS) tools in this area. For this purpose we conducted a project with the collaboration of the Dikili Municipality in İzmir (Turkey) to determine the following issues: a) Possible disaster mitigation as a result of earthquake-soil-structure interaction, b) Geo-enginnering problems (i.e: soil liquefaction, soil settlement, soil bearing capacity, soil amplification), c) The basin structure and possible fault of the Dikili district, d) Risk analysis on cultivated areas due to salty water injection, e) The tectonic activity of the study area from Miocene to present. During this study a number of measurements were carried out to solve the problems defined above. These measurements include; microtremor single station (H/V) method according to Nakamura's technique, which is applied at 222 points. The results provide maps of soil fundamental frequency, soil amplification and soil sedimentary thickness by using developed amprical relationships. Spatial Autocorrelation Technique (SPAC) was carried out in 11 sites with Guralp CG-5 seismometer to predict the shear wave velocity-depth model towards the sismological bedrock. Multi-channel analysis of Surface Wave (MASW), Microtremor Array Method (MAM) and Seismic Refraction Method were applied at 121 sites with SARA-Doremi Seismograph. The soil liquefaction-induced settlements are determined in the frame of shallow soil engineering problems. Vertical Electrical Sounding (VES) was carried out to define the presence of saltly and drinkable and hot/cold underground water, the location of possible faults and the bedrock depth which was estimated with a Scientrex Saris Resistivity Equipment. To define the areas which are influenced by salty water, induced polarization (IP) method was applied at 34 sites. The basin structure and the probably faults of the study area were determined by applying gravity measurements on 248 points with a CG-5 Autogravity meter. Evaluation of the combined data is very important for producing microzonation maps. We therefore integrated all of the data into the GIS database and prepared large variety of maps.

Accelerated soil carbon loss by biological changes under warming in Alaskan tundra

NASA Astrophysics Data System (ADS)

Liang, J.; Schuur, E.; Luo, Y.; Cole, J. R.; Jiang, L.; Konstantinidis, K.; Mauritz, M.; Natali, S.; Pegoraro, E.; Penton, C. R.; Plaza, C.; Salmon, V. G.; Shi, Z.; Tiedje, J. M.; Wu, L.; Xia, J.; Zhou, J.

2016-12-01

Permafrost regions, which contain a large amount of temperature-protected organic carbon (C), could be a significant C source as climate gets warmer. Climate warming can result in physical (e.g., temperature rise and permafrost thaw) and biological (e.g., microbial community composition) changes in the permafrost regions. While it is well agreed that physical changes can accelerate C releases to the atmosphere by increasing thermodynamic reaction rates and the accessibility of soil organic C (SOC) to decomposers, how biological changes impact permafrost soil C loss is still unclear. In this study, we quantified the impact of the biological changes on soil C loss in an Alaskan tundra through combining a process-based model and a unique field experiment. Our results showed that warming reduced the allocation of gross primary production to plants. In addition, warming significantly changed soil microbial functional community structure and consequently, stimulated the turnover rate of SOC, but decreased the C use efficiency. The altered biological properties significantly intensified soil C loss. Our study suggests that the predicted C loss in the permafrost regions may be underestimated due to the absence of the biological changes in Earth system models.

Application of Nonlinear Seismic Soil-Structure Interaction Analysis for Identification of Seismic Margins at Nuclear Power Plants

DOE Office of Scientific and Technical Information (OSTI.GOV)

Varma, Amit H.; Seo, Jungil; Coleman, Justin Leigh

2015-11-01

Seismic probabilistic risk assessment (SPRA) methods and approaches at nuclear power plants (NPP) were first developed in the 1970s and aspects of them have matured over time as they were applied and incrementally improved. SPRA provides information on risk and risk insights and allows for some accounting for uncertainty and variability. As a result, SPRA is now used as an important basis for risk-informed decision making for both new and operating NPPs in the US and in an increasing number of countries globally. SPRAs are intended to provide best estimates of the various combinations of structural and equipment failures thatmore » can lead to a seismic induced core damage event. However, in some instances the current SPRA approach contains large uncertainties, and potentially masks other important events (for instance, it was not the seismic motions that caused the Fukushima core melt events, but the tsunami ingress into the facility). INL has an advanced SPRA research and development (R&D) activity that will identify areas in the calculation process that contain significant uncertainties. One current area of focus is the use of nonlinear soil-structure interaction (NLSSI) analysis methods to accurately capture: 1) nonlinear soil behavior and 2) gapping and sliding between the NPP and soil. The goal of this study is to compare numerical NLSSI analysis results with recorded earthquake ground motions at Fukushima Daichii (Great Tohuku Earthquake) and evaluate the sources of nonlinearity contributing to the observed reduction in peak acceleration. Comparisons are made using recorded data in the free-field (soil column with no structural influence) and recorded data on the NPP basemat (in-structure response). Results presented in this study should identify areas of focus for future R&D activities with the goal of minimizing uncertainty in SPRA calculations. This is not a validation activity since there are too many sources of uncertainty that a numerical analysis would need to consider (variability in soil material properties, structural material properties, etc.). Rather the report will determine if the NLSSI calculations are following similar trends observed in the recorded data (i.e. reductions in maximum acceleration between the free-field and basemat) Numerical NLSSI results presented show maximum accelerations between the free field and basemat were reduced the EW and NS directions. The maximum acceleration in the UD direction increased slightly. The largest reduction in maximum accelerations between the modeled free-field and the NPP basemat resulted in nearly 50% reduction. The observation in reduction of numerical maximum accelerations in the EW and NS directions follows the observed trend in the recorded data. The maximum reductions observed in these NLSSI studies were due to soil nonlinearities, not gapping and sliding (although additional R&D is needed to develop an appropriate approach to model gapping and sliding). This exploratory study highlights the need for additional R&D on developing: (i) improved modeling of soil nonlinearities (soil constitutive models that appropriately capture cyclic soil behavior), (ii) improved modeling of gapping and sliding at the soil-structure interface (to appropriately capture the dissipation of energy at this interface), and (iii) experimental laboratory test data to calibrate the items (i) and (ii).« less

Soil CO2 Dynamics in a Tree Island Soil of the Pantanal: The Role of Soil Water Potential

PubMed Central

Johnson, Mark S.; Couto, Eduardo Guimarães; Pinto Jr, Osvaldo B.; Milesi, Juliana; Santos Amorim, Ricardo S.; Messias, Indira A. M.; Biudes, Marcelo Sacardi

2013-01-01

The Pantanal is a biodiversity hotspot comprised of a mosaic of landforms that differ in vegetative assemblages and flooding dynamics. Tree islands provide refuge for terrestrial fauna during the flooding period and are particularly important to the regional ecosystem structure. Little soil CO2 research has been conducted in this region. We evaluated soil CO2 dynamics in relation to primary controlling environmental parameters (soil temperature and soil water). Soil respiration was computed using the gradient method using in situ infrared gas analyzers to directly measure CO2 concentration within the soil profile. Due to the cost of the sensors and associated equipment, this study was unreplicated. Rather, we focus on the temporal relationships between soil CO2 efflux and related environmental parameters. Soil CO2 efflux during the study averaged 3.53 µmol CO2 m−2 s−1, and was equivalent to an annual soil respiration of 1220 g C m−2 y−1. This efflux value, integrated over a year, is comparable to soil C stocks for 0–20 cm. Soil water potential was the measured parameter most strongly associated with soil CO2 concentrations, with high CO2 values observed only once soil water potential at the 10 cm depth approached zero. This relationship was exhibited across a spectrum of timescales and was found to be significant at a daily timescale across all seasons using conditional nonparametric spectral Granger causality analysis. Hydrology plays a significant role in controlling CO2 efflux from the tree island soil, with soil CO2 dynamics differing by wetting mechanism. During the wet-up period, direct precipitation infiltrates soil from above and results in pulses of CO2 efflux from soil. The annual flood arrives later, and saturates soil from below. While CO2 concentrations in soil grew very high under both wetting mechanisms, the change in soil CO2 efflux was only significant when soils were wet from above. PMID:23762259

Soil CO₂ dynamics in a tree island soil of the Pantanal: the role of soil water potential.

PubMed

Johnson, Mark S; Couto, Eduardo Guimarães; Pinto, Osvaldo B; Milesi, Juliana; Santos Amorim, Ricardo S; Messias, Indira A M; Biudes, Marcelo Sacardi

2013-01-01

The Pantanal is a biodiversity hotspot comprised of a mosaic of landforms that differ in vegetative assemblages and flooding dynamics. Tree islands provide refuge for terrestrial fauna during the flooding period and are particularly important to the regional ecosystem structure. Little soil CO₂ research has been conducted in this region. We evaluated soil CO₂ dynamics in relation to primary controlling environmental parameters (soil temperature and soil water). Soil respiration was computed using the gradient method using in situ infrared gas analyzers to directly measure CO₂ concentration within the soil profile. Due to the cost of the sensors and associated equipment, this study was unreplicated. Rather, we focus on the temporal relationships between soil CO₂ efflux and related environmental parameters. Soil CO₂ efflux during the study averaged 3.53 µmol CO₂ m⁻² s⁻¹, and was equivalent to an annual soil respiration of 1220 g C m⁻² y⁻¹. This efflux value, integrated over a year, is comparable to soil C stocks for 0-20 cm. Soil water potential was the measured parameter most strongly associated with soil CO₂ concentrations, with high CO₂ values observed only once soil water potential at the 10 cm depth approached zero. This relationship was exhibited across a spectrum of timescales and was found to be significant at a daily timescale across all seasons using conditional nonparametric spectral Granger causality analysis. Hydrology plays a significant role in controlling CO₂ efflux from the tree island soil, with soil CO₂ dynamics differing by wetting mechanism. During the wet-up period, direct precipitation infiltrates soil from above and results in pulses of CO₂ efflux from soil. The annual flood arrives later, and saturates soil from below. While CO₂ concentrations in soil grew very high under both wetting mechanisms, the change in soil CO₂ efflux was only significant when soils were wet from above.

Role of macropore flow in the transport of Escherichia coli cells in undisturbed cores of a brown leached soil.

PubMed

Martins, Jean M F; Majdalani, Samer; Vitorge, Elsa; Desaunay, Aurélien; Navel, Aline; Guiné, Véronique; Daïan, Jean François; Vince, Erwann; Denis, Hervé; Gaudet, Jean Paul

2013-02-01

The objective of this work was to evaluate the transport of Escherichia coli cells in undisturbed cores of a brown leached soil collected at La Côte St André (France). Two undisturbed soil cores subjected to repeated injections of bacterial cells and/or bromide tracer were used to investigate the effect of soil hydrodynamics and ionic strength on cell mobility. Under the tested experimental conditions, E. coli cells were shown to be transported at the water velocity (retardation factor close to 1) and their retention appeared almost insensitive to water flow and ionic strength variations, both factors being known to control bacterial transport in model saturated porous media. In contrast, E. coli breakthrough curves evolved significantly along with the repetition of the cell injections in each soil core, with a progressive acceleration of their transport. The evolution of E. coli cells BTCs was shown to be due to the evolution of the structure of soil hydraulic pathways caused by the repeated water infiltrations and drainage as may occur in the field. This evolution was demonstrated through mercury intrusion porosimetry (MIP) performed on soil aggregates before and after the repeated infiltrations of bacteria. MIP revealed a progressive and important reduction of the soil aggregate porosity, n, that decreased from approximately 0.5 to 0.3, along with a decrease of the soil percolating step from 27 to 2 μm. From this result a clear compaction of soil aggregates was evidenced that concerned preferentially the pores larger than 2 μm equivalent diameter, i.e. those allowing bacterial cell passage. Since no significant reduction of the global soil volume was observed at the core scale, this aggregate compaction was accompanied by macropore formation that became progressively the preferential hydraulic pathway in the soil cores, leading to transiently bi-modal bacterial BTCs. The evolution of the soil pore structure induced a modification of the main hydrodynamic processes, evolving from a matrix-dominant transfer of water and bacteria to a macropore-dominant transfer. This work points out the importance of using undisturbed natural soils to evaluate the mobility of bacteria in the field, since the evolving hydrodynamic properties of soils appeared to dominate most physicochemical factors.

Carbon Flux and Isotopic Character of Soil and Soil Gas in Stabilized and Active Thaw Slumps in Northwest Alaska

NASA Astrophysics Data System (ADS)

Jensen, A.; Crosby, B. T.; Mora, C. I.; Lohse, K. A.

2012-12-01

Permafrost soils store nearly half the world's global carbon. Warming of arctic landscape results in permafrost thaw which causes ground subsidence or thermokarst. On hillslopes, these features rapidly and dramatically alter soil structure, temperature, and moisture, as well as the content and quality of soil organic matter. These changes alter both the rate and mechanism of carbon cycling in permafrost soils, making frozen soils available to both anaerobic and aerobic decomposition. In order to improve our predictive capabilities, we use a chronosequence thaw slumps to examine how fluxes from active and stabilized features differ. Our study site is along the Selawik River in northwest Alaska where a retrogressive thaw slump initiated in the spring of 2004. It has grown to a surface area of 50,000 m2. Products of the erosion are stored on the floor of the feature, trapped on a fan or flushed into the Selawik River. North of slump is undisturbed tundra and adjacent to the west is a slump feature that stabilized and is now covered with a second generation of spruce trees. In this 2 year study, we use measurements of CO2 efflux, δC13 in soil profiles and CO2 and CH4 abundance to constrain the response of belowground carbon emissions. We also focused on constraining which environmental factors govern C emissions within each of the above ecosystems. To this end, we measured soil temperature, and moisture, abundance and quality of soil organic carbon (SOC), water content, and bulk carbon compositions. Preliminary data from the summer of 2011 suggest that vegetation composition and soil temperature exert the strong control on CO2 efflux. The floor of the active slump and fan are bare mineral soils and are generally 10 to 15°C warmer than the tundra and stabilized slump. Consistently decreasing δC13 soil gas profiles in the recovered slump confirm that this region is a well-drained soil dominated by C3 vegetation. The δC13 gas profiles for the tundra, active slump floor, and active fan tend to be more variable as a consequence of less consistently structured soils. This could be due to either the predominance of older carbon being recycled within these profiles or a skewed balance between anaerobic vs. aerobic respiration.

The Re-colonization Ability of a Native Earthworm, Estherella spp., in Forests and Pastures in Puerto Rico

Treesearch

Ching-Yu Huang; Grizelle Gonzalez; Paul F. Hendrix

2006-01-01

Populations of some native earthworm species are decreasing or disappearing due to human activities like habitat disturbance and introduction of exotic earthworms. Habitat disturbance can cause changes in soil physical structure and nutrient cycling, which may reduce native earthworm populations prior to the invasion of exotic earthworms. Our purpose was 1) to...

Differential expression of genes encoding phosphate transporters contributes to arsenic accumulation in shrub willow (Salix spp.)

Treesearch

Emily E. Puckett; Michelle J. Serpiglia; Alyssa M. DeLeon; Stephanie Long; Rakesh Minocha; Lawrence B. Smart

2012-01-01

Studies of arsenate and phosphate uptake by plants in hydroponic and soil systems indicate a common transport mechanism via the phosphate transporters (PHTs) due to structural similarity of the anions. Typically, the presence of phosphate decreases plant uptake and translocation of arsenate in hydroponic solution. This study quantified arsenic (As) uptake related to...

Genetic diversity and structure of an endangered desert shrub and the implications for conservation

Treesearch

Zhihao Su; Bryce A. Richardson; Li Zhuo; Xiaolong Jiang; Wenjun Li; Xiaoshan Kang

2017-01-01

Population genetic information can provide valuable insight for the conservation and management of threatened and endangered plant species. Tamarix taklamakanensis is an endangered shrub endemic to arid basins of northwestern China. This species serves to stabilize soils in this region, but has seen substantial loss in its abundance due to depletion of ground water....

Soil Respiration in Tibetan Alpine Grasslands: Belowground Biomass and Soil Moisture, but Not Soil Temperature, Best Explain the Large-Scale Patterns

PubMed Central

Geng, Yan; Wang, Yonghui; Yang, Kuo; Wang, Shaopeng; Zeng, Hui; Baumann, Frank; Kuehn, Peter; Scholten, Thomas; He, Jin-Sheng

2012-01-01

The Tibetan Plateau is an essential area to study the potential feedback effects of soils to climate change due to the rapid rise in its air temperature in the past several decades and the large amounts of soil organic carbon (SOC) stocks, particularly in the permafrost. Yet it is one of the most under-investigated regions in soil respiration (Rs) studies. Here, Rs rates were measured at 42 sites in alpine grasslands (including alpine steppes and meadows) along a transect across the Tibetan Plateau during the peak growing season of 2006 and 2007 in order to test whether: (1) belowground biomass (BGB) is most closely related to spatial variation in Rs due to high root biomass density, and (2) soil temperature significantly influences spatial pattern of Rs owing to metabolic limitation from the low temperature in cold, high-altitude ecosystems. The average daily mean Rs of the alpine grasslands at peak growing season was 3.92 µmol CO2 m−2 s−1, ranging from 0.39 to 12.88 µmol CO2 m−2 s−1, with average daily mean Rs of 2.01 and 5.49 µmol CO2 m−2 s−1 for steppes and meadows, respectively. By regression tree analysis, BGB, aboveground biomass (AGB), SOC, soil moisture (SM), and vegetation type were selected out of 15 variables examined, as the factors influencing large-scale variation in Rs. With a structural equation modelling approach, we found only BGB and SM had direct effects on Rs, while other factors indirectly affecting Rs through BGB or SM. Most (80%) of the variation in Rs could be attributed to the difference in BGB among sites. BGB and SM together accounted for the majority (82%) of spatial patterns of Rs. Our results only support the first hypothesis, suggesting that models incorporating BGB and SM can improve Rs estimation at regional scale. PMID:22509373

Oxygen Isotope Compositions of Meteoric Water Across an Elevation Gradient in Southern Peru

NASA Astrophysics Data System (ADS)

Xu, D. R.; White, E.; Cassel, E. J.; Lynch, B.; Yanites, B.; Breecker, D.

2017-12-01

The Central Andes is a prime example of elevated topography generated by oceanic plate subduction. Whereas previous stable isotope studies have investigated the paleoelevation of the Andean Eastern Cordillera, little is known about the paleoelevation of the Western Cordillera, where arc volcanism now occurs. As a first step towards studying the paleoelevation of this region, we investigated the change in δ18O values of modern soil waters across an elevation gradient from sea level to about 4725 meters in southern Peru. We sampled soil profiles from 5 to 80 cm in 15-20cm increments, and we sampled water from flowing natural streams at various elevations. We used cryogenic vacuum extraction to quantitatively remove non-structural water from soil samples. The δ18O values of water extracted from soil samples varies with the depth in the soil due to the diminishing effect of seasonality and evaporation. Every high elevation (>3500m) soil profile we measured had nearly constant δ18O values below 5cm and a total range of δ18O values between -12.8‰ and -17.1‰, apart from the Cusco profile. In the Cusco profile, the δ18O values ranged from -7.2 ‰ at 5 cm to -21.8 ‰ at 60 cm, defining a strong monotonic decrease not seen in other soil profiles. The δ18O trend in the Cusco profile may be different due to the impact of evaporation, soil hydrology, and/or seasonality in the δ18O values of precipitation. Further spatial analysis must be conducted to pinpoint a specific cause. Considering only the samples collected below 40cm, which are likely the best estimate of mean annual precipitation, the δ18O values decrease with increasing elevation at a rate higher than the global mean, suggesting that oxygen isotope paleoaltimetry can work in this study region.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Herrmann, A M; Ritz, K; Nunan, N

Soils are structurally heterogeneous across a wide range of spatio-temporal scales. Consequently, external environmental conditions do not have a uniform effect throughout the soil, resulting in a large diversity of micro-habitats. It has been suggested that soil function can be studied without explicit consideration of such fine detail, but recent research has indicated that the micro-scale distribution of organisms may be of importance for a mechanistic understanding of many soil functions. Due to a lack of techniques with adequate sensitivity for data collection at appropriate scales, the question 'How important are various soil processes acting at different scales for ecologicalmore » function?' is challenging to answer. The nano-scale secondary ion mass spectrometer (NanoSIMS) represents the latest generation of ion microprobes which link high-resolution microscopy with isotopic analysis. The main advantage of NanoSIMS over other secondary ion mass spectrometers is the ability to operate at high mass resolution, whilst maintaining both excellent signal transmission and spatial resolution ({approx}50 nm). NanoSIMS has been used previously in studies focusing on presolar materials from meteorites, in material science, biology, geology and mineralogy. Recently, the potential of NanoSIMS as a new tool in the study of biophysical interfaces in soils has been demonstrated. This paper describes the principles of NanoSIMS and discusses the potential of this tool to contribute to the field of biogeochemistry and soil ecology. Practical considerations (sample size and preparation, simultaneous collection of isotopes, mass resolution, isobaric interference and quantification of the isotopes of interest) are discussed. Adequate sample preparation avoiding biases in the interpretation of NanoSIMS data due to artifacts and identification of regions-of interest are of most concerns in using NanoSIMS as a new tool in biogeochemistry and soil ecology. Finally, we review the areas of research most likely to benefit from the high resolving power attainable with this new approach.« less

Phytomanagement of Cd-contaminated soils using maize (Zea mays L.) assisted by plant growth-promoting rhizobacteria.

PubMed

Moreira, Helena; Marques, Ana P G C; Franco, Albina R; Rangel, António O S S; Castro, Paula M L

2014-01-01

Zea mays (L.) is a crop widely cultivated throughout the world and can be considered suitable for phytomanagement due to its metal resistance and energetic value. In this study, the effect of two plant growth-promoting rhizobacteria, Ralstonia eutropha and Chryseobacterium humi, on growth and metal uptake of Z. mays plants in soils contaminated with up to 30 mg Cd kg(-1) was evaluated. Bacterial inoculation increased plant biomass up to 63% and led to a decrease of up to 81% in Cd shoot levels (4-88 mg Cd kg(-1)) and to an increase of up to 186% in accumulation in the roots (52-134 mg Cd kg(-1)). The rhizosphere community structure changed throughout the experiment and varied with different levels of Cd soil contamination, as revealed by molecular biology techniques. Z. mays plants inoculated with either of the tested strains may have potential application in a strategy of soil remediation, in particular short-term phytostabilization, coupled with biomass production for energy purposes.

Comparative study of soil erodibility and critical shear stress between loess and purple soils

NASA Astrophysics Data System (ADS)

Xing, Hang; Huang, Yu-han; Chen, Xiao-yan; Luo, Bang-lin; Mi, Hong-xing

2018-03-01

Loess and purple soils are two very important cultivated soils, with the former in the loess region and the latter in southern sub-tropical region of China, featured with high-risks of erosion, considerable differences of soil structures due to differences in mineral and nutrient compositions. Study on soil erodibility (Kr) and critical shear stress (τc) of these two soils is beneficial to predict soil erosion with such models as WEPP. In this study, rill erosion experimental data sets of the two soils are used for estimating their Kr and τc before they are compared to understand their differences of rill erosion behaviors. The maximum detachment rates of the loess and purple soils are calculated under different hydrodynamic conditions (flow rates: 2, 4, 8 L/min; slope gradients: 5°, 10°, 15°, 20°, 25°) through analytical and numerical methods respectively. Analytical method used the derivative of the function between sediment concentration and rill length to estimate potential detachment rates, at the rill beginning. Numerical method estimated potential detachment rates with the experimental data, at the rill beginning and 0.5 m location. The Kr and τc of these two soils are determined by the linear equation based on experimental data. Results show that the methods could well estimate the Kr and τc of these two soils as they remain basically unchanged under different hydrodynamic conditions. The Kr value of loess soil is about twice of the purple soil, whereas the τc is about half of that. The numerical results have good correlations with the analytical values. These results can be useful in modeling rill erosion processes of loess and purple soils.

Microbial activity promotes carbon storage in temperate soils

NASA Astrophysics Data System (ADS)

Lange, Markus; Eisenhauer, Nico; Sierra, Carlos; Gleixner, Gerd

2014-05-01

Soils are one of the most important carbon sink and sources. Soils contain up to 3/4 of all terrestrial carbon. Beside physical aspects of soil properties (e.g. soil moisture and texture) plants play an important role in carbon sequestration. The positive effect of plant diversity on carbon storage is already known, though the underlying mechanisms remain still unclear. In the frame of the Jena Experiment, a long term biodiversity experiment, we are able to identify these processes. Nine years after an land use change from an arable field to managed grassland the mean soil carbon concentrations increased towards the concentrations of permanent meadows. The increase was positively linked to a plant diversity gradient. High diverse plant communities produce more biomass, which in turn results in higher amounts of litter inputs. The plant litter is transferred to the soil organic matter by the soil microbial community. However, higher plant diversity also causes changes in micro-climatic condition. For instance, more diverse plant communities have a more dense vegetation structure, which reduced the evaporation of soils surface and thus, increases soil moisture in the top layer. Higher inputs and higher soil moisture lead to an enlarged respiration of the soil microbial community. Most interestingly, the carbon storage in the Jena Experiment was much more related to microbial respiration than to plant root inputs. Moreover, using radiocarbon, we found a significant younger carbon age in soils of more diverse plant communities than in soils of lower diversity, indicating that more fresh carbon is integrated into the carbon pool. Putting these findings together, we could show, that the positive link between plant diversity and carbon storage is due to a higher microbial decomposition of plant litter, pointing out that carbon storage in soils is a function of the microbial community.

Soil sealing and vesicular layer formation as initial structure development and its effect on infiltration

NASA Astrophysics Data System (ADS)

Badorreck, A.; Gerke, H. H.; Weller, U.; Vontobel, P.

2009-04-01

In the Lusatia mining district (NE-Germany) an artificial catchment was constructed to study initial ecosystem development and runoff generation. As a key process in this early stage, we investigate the surface structure dynamics as it strongly influences erosion, infiltration, matter dynamics, and vegetation establishment. The presented work focuses on observations of soil pore structure formation at the surface at five sites in the catchment and in an adjacent "younger" area composed of comparable sediments. Moreover we've conducted infiltration experiments in the lab and field to relate the soil pore structure to the hydraulic properties. The surface soil was sampled in cylindrical rings (10 cm³) down to 2 cm depth from which bulk density profiles were obtained using X-ray computed tomography (CT) (at UFZ- Halle, Germany) with a resolution of 0.084 mm. The influence of structure on infiltration was investigated using neutron radiography (at the NEUTRA facility of the Paul-Scherrer-Institut, Villigen, Switzerland) to visualise two-dimensional (2D) infiltration patterns. The slab-type samples were equilibrated to different initial water contents and then exposed to drip irrigation (to simulate rainfall) while a series of neutron radiographs were taken. In addition, field measurements with a miniature tension infiltrometer were conduced. The micro-tomographies exhibit formation of surface sealing whose thickness and intensity vary with silt and clay content. The CT images show several coarser- and finer-textured micro-layers at the sample surfaces that were formed as a consequence of repeated washing in of finer particles in underlying coarser sediment. In micro-depressions, the uppermost layers consist of sorted fine sand and silt due to wind erosion. Similar as for desert pavements, a vesicular pore structure developed in these sediments on top, but also scattered in fine sand- and silt-enriched micro-layers. The infiltration rates were severely affected by the surface crusts; however, the rates were independent of the vesicular pore layer.

Changes in the Bacterial Community Structure of Remediated Anthracene-Contaminated Soils

PubMed Central

Delgado-Balbuena, Laura; Bello-López, Juan M.; Navarro-Noya, Yendi E.; Rodríguez-Valentín, Analine; Luna-Guido, Marco L.; Dendooven, Luc

2016-01-01

Mixing soil or adding earthworms (Eisenia fetida (Savigny, 1826)) accelerated the removal of anthracene, a polycyclic aromatic hydrocarbon, from a pasture and an arable soil, while a non-ionic surfactant (Surfynol® 485) inhibited the removal of the contaminant compared to the untreated soil. It was unclear if the treatments affected the soil bacterial community and consequently the removal of anthracene. Therefore, the bacterial community structure was monitored by means of 454 pyrosequencing of the 16S rRNA gene in the pasture and arable soil mixed weekly, amended with Surfynol® 485, E. fetida or organic material that served as food for the earthworms for 56 days. In both soils, the removal of anthracene was in the order: mixing soil weekly (100%) > earthworms applied (92%) > organic material applied (77%) > untreated soil (57%) > surfactant applied (34%) after 56 days. There was no clear link between removal of anthracene from soil and changes in the bacterial community structure. On the one hand, application of earthworms removed most of the contaminant from the arable soil and had a strong effect on the bacterial community structure, i.e. a decrease in the relative abundance of the Acidobacteria, Chloroflexi and Gemmatimonadetes, and an increase in that of the Proteobacteria compared to the unamended soil. Mixing the soil weekly removed all anthracene from the arable soil, but had little or no effect on the bacterial community structure. On the other hand, application of the surfactant inhibited the removal of anthracene from the arable soil compared to the untreated soil, but had a strong effect on the bacterial community structure, i.e. a decrease in the relative abundance of Cytophagia (Bacteroidetes), Chloroflexi, Gemmatimonadetes and Planctomycetes and an increase in that of the Flavobacteria (Bacteroidetes) and Proteobacteria. Additionally, the removal of anthracene was similar in the different treatments of both the arable and pasture soil, but the effect of application of carrot residue, earthworms or the surfactant on the bacterial community structure was more accentuated in the arable soil than in the pasture soil. It was found that removal of anthracene was not linked to changes in the bacterial community structure. PMID:27727277

Flood quantiles scaling with upper soil hydraulic properties for different land uses at catchment scale

NASA Astrophysics Data System (ADS)

Peña, Luis E.; Barrios, Miguel; Francés, Félix

2016-10-01

Changes in land use within a catchment are among the causes of non-stationarity in the flood regime, as they modify the upper soil physical structure and its runoff production capacity. This paper analyzes the relation between the variation of the upper soil hydraulic properties due to changes in land use and its effect on the magnitude of peak flows: (1) incorporating fractal scaling properties to relate the effect of the static storage capacity (the sum of capillary water storage capacity in the root zone, canopy interception and surface puddles) and the upper soil vertical saturated hydraulic conductivity on the flood regime; (2) describing the effect of the spatial organization of the upper soil hydraulic properties at catchment scale; (3) examining the scale properties in the parameters of the Generalized Extreme Value (GEV) probability distribution function, in relation to the upper soil hydraulic properties. This study considered the historical changes of land use in the Combeima River catchment in South America, between 1991 and 2007, using distributed hydrological modeling of daily discharges to describe the hydrological response. Through simulation of land cover scenarios, it was demonstrated that it is possible to quantify the magnitude of peak flows in scenarios of land cover changes through its Wide-Sense Simple Scaling with the upper soil hydraulic properties.

Interactions between soil texture, water, and nutrients control patterns of biocrusts abundance and structure

NASA Astrophysics Data System (ADS)

Young, Kristina; Bowker, Matthew; Reed, Sasha; Howell, Armin

2017-04-01

Heterogeneity in the abiotic environment structures biotic communities by controlling niche space and parameters. This has been widely observed and demonstrated in vascular plant and other aboveground communities. While soil organisms are presumably also strongly influenced by the physical and chemical dimensions of the edaphic environment, there are fewer studies linking the development, structure, productivity or function of surface soil communities to specific edaphic gradients. Here, we use biological soil crusts (biocrusts) as a model system to determine mechanisms regulating community structure of soil organisms. We chose soil texture to serve as an edaphic gradient because of soil texture's influence over biocrust distribution on a landscape level. We experimentally manipulated texture in constructed soil, and simultaneously manipulated two main outcomes of texture, water and nutrient availability, to determine the mechanism underlying texture's influence on biocrust abundance and structure. We grew biocrust communities from a field-sourced inoculum on four different soil textures, sieved from the same parent soil material, manipulating watering levels and nutrient additions across soil textures in a full-factorial design over a 5-month period of time. We measured abundance and structure of biocrusts over time, and measured two metrics of function, N2 fixation rates and soil stabilization, at the conclusion of the experiment. Our results showed finer soil textures resulted in faster biocrust community development and dominance by mosses, whereas coarser textures grew more slowly and had biocrust communities dominated by cyanobacteria and lichen. Additionally, coarser textured soils contained cyanobacterial filaments significantly deeper into the soil profile than fine textured soils. N2-fixation values increased with increasing moss cover and decreased with increasing cyanobacterial cover, however, the rate of change depended on soil texture and water amount. Soil shear resistance was highest on finer textured soil with the highest watering treatment, whereas compression resistance was highest on the coarsest textured soils with the highest watering amounts. Nutrient addition did not influence total cover or biocrust function, but did decrease lichen cover. Taken together, these results suggest that interactions between soil texture, water, and to a lesser degree nutrients, create predictable patterns in biocrust assemblage and offers a mechanistic understanding of edaphic controls over biocrust abundance and structure. These insights add to our increasing understanding of how edaphic gradients structure soil communities.

Misrepresentation and amendment of soil moisture in conceptual hydrological modelling

NASA Astrophysics Data System (ADS)

Zhuo, Lu; Han, Dawei

2016-04-01

Although many conceptual models are very effective in simulating river runoff, their soil moisture schemes are generally not realistic in comparison with the reality (i.e., getting the right answers for the wrong reasons). This study reveals two significant misrepresentations in those models through a case study using the Xinanjiang model which is representative of many well-known conceptual hydrological models. The first is the setting of the upper limit of its soil moisture at the field capacity, due to the 'holding excess runoff' concept (i.e., runoff begins on repletion of its storage to the field capacity). The second is neglect of capillary rise of water movement. A new scheme is therefore proposed to overcome those two issues. The amended model is as effective as its original form in flow modelling, but represents more logically realistic soil water processes. The purpose of the study is to enable the hydrological model to get the right answers for the right reasons. Therefore, the new model structure has a better capability in potentially assimilating soil moisture observations to enhance its real-time flood forecasting accuracy. The new scheme is evaluated in the Pontiac catchment of the USA through a comparison with satellite observed soil moisture. The correlation between the XAJ and the observed soil moisture is enhanced significantly from 0.64 to 0.70. In addition, a new soil moisture term called SMDS (Soil Moisture Deficit to Saturation) is proposed to complement the conventional SMD (Soil Moisture Deficit).

The Effects of Warming and Nitrogen Addition on Soil Nitrogen Cycling in a Temperate Grassland, Northeastern China

PubMed Central

Ma, Lin-Na; Lü, Xiao-Tao; Liu, Yang; Guo, Ji-Xun; Zhang, Nan-Yi; Yang, Jian-Qin; Wang, Ren-Zhong

2011-01-01

Background Both climate warming and atmospheric nitrogen (N) deposition are predicted to affect soil N cycling in terrestrial biomes over the next century. However, the interactive effects of warming and N deposition on soil N mineralization in temperate grasslands are poorly understood. Methodology/Principal Findings A field manipulation experiment was conducted to examine the effects of warming and N addition on soil N cycling in a temperate grassland of northeastern China from 2007 to 2009. Soil samples were incubated at a constant temperature and moisture, from samples collected in the field. The results showed that both warming and N addition significantly stimulated soil net N mineralization rate and net nitrification rate. Combined warming and N addition caused an interactive effect on N mineralization, which could be explained by the relative shift of soil microbial community structure because of fungal biomass increase and strong plant uptake of added N due to warming. Irrespective of strong intra- and inter-annual variations in soil N mineralization, the responses of N mineralization to warming and N addition did not change during the three growing seasons, suggesting independence of warming and N responses of N mineralization from precipitation variations in the temperate grassland. Conclusions/Significance Interactions between climate warming and N deposition on soil N cycling were significant. These findings will improve our understanding on the response of soil N cycling to the simultaneous climate change drivers in temperate grassland ecosystem. PMID:22096609

Remediation of degraded arable steppe soils in Moldova using vetch as green manure

NASA Astrophysics Data System (ADS)

Wiesmeier, M.; Lungu, M.; Hübner, R.; Cerbari, V.

2015-01-01

In the Republic of Moldova, non-sustainable arable farming led to severe degradation and erosion of fertile steppe soils (Chernozems). As a result, the Chernozems lost about 40% of their initial amounts of soil organic carbon (SOC). Aim of this study was to remediate degraded arable soils and promote carbon sequestration by implementation of cover cropping and green manuring in Moldova. Thereby, the suitability of the legume hairy vetch (Vicia sativa) as cover crop under the dry, continental climate of Moldova was examined. At two experimental sites, the effect of cover cropping on chemical and physical soil properties as well as on yields of subsequent main crops was determined. The results showed a significant increase of SOC after incorporation of hairy vetch due to a high above- and belowground biomass production that was related with a high input of carbon and nitrogen. A calculation of SOC stocks based on equivalent soil masses revealed a sequestration of around 3 t C ha-1 yr-1 as a result of hairy vetch cover cropping. The buildup of SOC was associated with an improvement of the soil structure as indicated by a distinct decrease of bulk density and a relative increase of macroaggregates at the expense of microaggregates and clods. As a result, yields of subsequent main crops increased by around 20%. Our results indicated that hairy vetch is a promising cover crop to remediate degraded steppe soils, control soil erosion and sequestrate substantial amounts of atmospheric C in arable soils of Moldova.

Molecular aspects of aromatic C additions to soils: Implications of char quality for ecosystem functionality

NASA Astrophysics Data System (ADS)

Keiluweit, M.; Nico, P. S.; Johnson, M. G.; Kleber, M.

2009-12-01

Solid residues of incomplete combustion (biochar or char) are continuously being added to soils due to natural vegetation fires in many ecosystems. However, new strategies for carbon sequestration in soils are likely to include the active addition of biochar to soils. Since biochar is a highly aromatic organic material such additions will modify the native molecular structure of soil organic matter and thus alter interactions with the global atmosphere and hydrosphere. Here we present a molecular level assessment of the physical organization and chemical complexity of biomass-derived chars and, specifically, that of aromatic carbon in char structures. Differences among wood and grass charred at temperatures from 100 to 700°C are investigated. BET-N2 surface area, X-ray diffraction (XRD), synchrotron-based Near-edge X-ray Absorption Fine Structure (NEXAFS) and Fourier transform infrared (FT-IR) spectroscopy results demonstrate how the two plant precursor materials undergo analogous, but quantitatively different physical-chemical transitions as charring intensity increases. These changes suggest the existence of four distinct physical and chemical categories of char. We find that each category of char consists of a unique mixture of chemical phases and physical states: (i) in transition chars the crystalline character of the precursor materials is preserved, (ii) in amorphous chars the heat-altered molecules and incipient aromatic polycondensates are randomly mixed, (iii) composite chars consist of poorly ordered graphene stacks embedded in amorphous phases, and (iv) turbostratic chars are dominated by turbostratic (disordered) graphitic crystallites. There is wide variation in both the chemical and the physical nature of aromatic carbon among these char categories. In this presentation we will point out how molecular variations among the aromatic components of the different char categories translate into differences in their ability to: (i) persist in the environment, (ii) function as environmental sorbents, and (iii) to enable the soil to provide environmental services.

Batch experiments versus soil pore water extraction--what makes the difference in isoproturon (bio-)availability?

PubMed

Folberth, Christian; Suhadolc, Metka; Scherb, Hagen; Munch, Jean Charles; Schroll, Reiner

2009-10-01

Two approaches to determine pesticide (bio-)availability in soils (i) batch experiments with "extraction with an excess of water" (EEW) and (ii) the recently introduced "soil pore water (PW) extraction" of pesticide incubated soil samples have been compared with regard to the sorption behavior of the model compound isoproturon in soils. A significant correlation between TOC and adsorbed pesticide amount was found when using the EEW approach. In contrast, there was no correlation between TOC and adsorbed isoproturon when using the in situ PW extraction method. Furthermore, sorption was higher at all concentrations in the EEW method when comparing the distribution coefficients (K(d)) for both methods. Over all, sorption in incubated soil samples at an identical water tension (-15 kPa) and soil density (1.3 g cm(-3)) appears to be controlled by a complex combination of sorption driving soil parameters. Isoproturon bioavailability was found to be governed in different soils by binding strength and availability of sorption sites as well as water content, whereas the dominance of either one of these factors seems to depend on the individual composition and characteristics of the respective soil sample. Using multiple linear regression analysis we obtained furthermore indications that the soil pore structure is affected by the EEW method due to disaggregation, resulting in a higher availability of pesticide sorption sites than in undisturbed soil samples. Therefore, it can be concluded that isoproturon sorption is overestimated when using the EEW method, which should be taken into account when using data from this approach or similar batch techniques for risk assessment analysis.

Impact of groundwater levels on evaporation and water-vapor fluxes in highly saline soils

NASA Astrophysics Data System (ADS)

Munoz, J. F.; Hernández, M. F.; Braud, I.; Gironas, J. A.; Suarez, F. I.

2012-12-01

In aquifers of arid and hyper-arid zones, such as those occurring in the Chilean Andes high plateau, it is important to determine both the quantity and location of water discharges at the temporal scales of interest to close the basin's water budget and thus, to manage the water resource properly. In zones where shallow aquifers are the main source of water, overexploitation of the water resource changes the dynamics of water, heat and solute transport in the vadose zone. As aquifers are exploited, fluctuations in depth to groundwater are exacerbated. These fluctuations modify both soil structure and evaporation from the ground, which is typically the most important discharge from the water budget and is very difficult to estimate. Therefore, a correct quantification of evaporation from these soils is essential to improve the accuracy of the water balance estimation. The objective of this study was to investigate the evaporation processes and water-vapor fluxes in a soil column filled with a saline soil from the Salar del Huasco basin, Chile. Water content, electrical conductivity and temperature at different depths in the soil profile were monitored to determine the liquid and vapor fluxes within the soil column. The results showed that evaporation is negligible when the groundwater table is deeper than 1 m. For shallower groundwater levels, evaporation increases in an exponential fashion reaching a value of 3 mm/day when the groundwater table is near the surface of the ground. These evaporation rates are on the same order of magnitude than the field measurements, but slightly lower due to the controlled conditions maintained in the laboratory. Isothermal fluid fluxes were predominant over the non-isothermal fluid and water vapor fluxes. The net flux for all the phreatic levels tested in the laboratory showed different behaviors, with ascending or descending flows as a consequence of changes in water content and temperature distribution within the soil. It was found that evaporation from bare soils occurs as a consequence of vapor transport due to the thermal gradients. This vapor transport was also influences by the salinity of the soil.

Soil organic carbon and total nitrogen gains in an old growth deciduous forest in Germany.

PubMed

Schrumpf, Marion; Kaiser, Klaus; Schulze, Ernst-Detlef

2014-01-01

Temperate forests are assumed to be organic carbon (OC) sinks, either because of biomass increases upon elevated CO2 in the atmosphere and large nitrogen deposition, or due to their age structure. Respective changes in soil OC and total nitrogen (TN) storage have rarely been proven. We analysed OC, TN, and bulk densities of 100 soil cores sampled along a regular grid in an old-growth deciduous forest at the Hainich National Park, Germany, in 2004 and again in 2009. Concentrations of OC and TN increased significantly from 2004 to 2009, mostly in the upper 0-20 cm of the mineral soil. Changes in the fine earth masses per soil volume impeded the detection of OC changes based on fixed soil volumes. When calculated on average fine earth masses, OC stocks increased by 323 ± 146 g m(-2) and TN stocks by 39 ± 10 g m(-2) at 0-20 cm soil depth from 2004 to 2009, giving average annual accumulation rates of 65 ± 29 g OC m(-2) yr(-1) and 7.8 ± 2 g N m(-2) yr(-1). Accumulation rates were largest in the upper part of the B horizon. Regional increases in forest biomass, either due to recovery of forest biomass from previous forest management or to fertilization by elevated CO2 and N deposition, are likely causes for the gains in soil OC and TN. As TN increased stronger (1.3% yr(-1) of existing stocks) than OC (0.9% yr(-1)), the OC-to-TN ratios declined significantly. Results of regression analyses between changes in OC and TN stocks suggest that at no change in OC, still 3.8 g TN m(-2) yr(-1) accumulated. Potential causes for the increase in TN in excess to OC are fixation of inorganic N by the clay-rich soil or changes in microbial communities. The increase in soil OC corresponded on average to 6-13% of the estimated increase in net biome productivity.

Soil Organic Carbon and Total Nitrogen Gains in an Old Growth Deciduous Forest in Germany

PubMed Central

Schrumpf, Marion; Kaiser, Klaus; Schulze, Ernst-Detlef

2014-01-01

Temperate forests are assumed to be organic carbon (OC) sinks, either because of biomass increases upon elevated CO2 in the atmosphere and large nitrogen deposition, or due to their age structure. Respective changes in soil OC and total nitrogen (TN) storage have rarely been proven. We analysed OC, TN, and bulk densities of 100 soil cores sampled along a regular grid in an old-growth deciduous forest at the Hainich National Park, Germany, in 2004 and again in 2009. Concentrations of OC and TN increased significantly from 2004 to 2009, mostly in the upper 0–20 cm of the mineral soil. Changes in the fine earth masses per soil volume impeded the detection of OC changes based on fixed soil volumes. When calculated on average fine earth masses, OC stocks increased by 323±146 g m−2 and TN stocks by 39±10 g m−2 at 0–20 cm soil depth from 2004 to 2009, giving average annual accumulation rates of 65±29 g OC m−2 yr−1 and 7.8±2 g N m−2 yr−1. Accumulation rates were largest in the upper part of the B horizon. Regional increases in forest biomass, either due to recovery of forest biomass from previous forest management or to fertilization by elevated CO2 and N deposition, are likely causes for the gains in soil OC and TN. As TN increased stronger (1.3% yr−1 of existing stocks) than OC (0.9% yr−1), the OC-to-TN ratios declined significantly. Results of regression analyses between changes in OC and TN stocks suggest that at no change in OC, still 3.8 g TN m−2 yr−1 accumulated. Potential causes for the increase in TN in excess to OC are fixation of inorganic N by the clay-rich soil or changes in microbial communities. The increase in soil OC corresponded on average to 6–13% of the estimated increase in net biome productivity. PMID:24586720

Interactions Between Wind Erosion, Vegetation Structure, and Soil Stability in Groundwater Dependent Plant Communities

NASA Astrophysics Data System (ADS)

Vest, K. R.; Elmore, A. J.; Okin, G. S.

2009-12-01

Desertification is a human induced global phenomenon causing a loss of biodiversity and ecosystem productivity. Semi-arid grasslands are vulnerable to anthropogenic impacts (i.e., groundwater pumping and surface water diversion) that decrease vegetation cover and increase bare soil area leading to a greater probability of soil erosion, potentially enhancing feedback processes associated with desertification. To enhance our understanding of interactions between anthropogenic, physical, and biological factors causing desertification, this study used a combination of modeling and field observations to examine the relationship between chronic groundwater pumping and vegetation cover change and its effects on soil erosion and stability. The work was conducted in Owens Valley California, where a long history of groundwater pumping and surface water diversion has lead to documented vegetation changes. The work examined hydrological, ecological and biogeochemical factors across thirteen sites in Owens Valley. We analyzed soil stability, vegetation and gap size, soil organic carbon, and we also installed Big Spring Number Eight (BSNE) catchers to calculate mass transport of aeolian sediment across sites. Mass transport calculations were used to validate a new wind erosion model that represents the effect of porous vegetation on surface windshear velocity. Results across two field seasons show that the model can be used to predict mass transport, and areas with increased groundwater pumping show a greater susceptibility to erosion. Sediment collected in BSNE catchers was positively correlated with site gap size. Additionally, areas with larger gap sizes have a greater threshold shear velocity and soil stability, yet mass transport was greater at these sites than at sites with smaller gap sizes. Although modeling is complicated by spatial variation in multiple model parameters (e.g., gap size, threshold shear velocity in gaps), our results support the hypothesis that soils with high organic matter are being eroded following the loss of vegetation cover due to groundwater decline leaving behind bare soil surfaces with less fertility hampering vegetation reestablishment. Desertification in this system is apparently easily initiated through groundwater decline due to the high friability of these meadow soils.

Land-use change and soil type are drivers of fungal and archaeal communities in the Pampa biome.

PubMed

Lupatini, Manoeli; Jacques, Rodrigo Josemar Seminoti; Antoniolli, Zaida Inês; Suleiman, Afnan Khalil Ahmad; Fulthorpe, Roberta R; Roesch, Luiz Fernando Würdig

2013-02-01

The current study aimed to test the hypothesis that both land-use change and soil type are responsible for the major changes in the fungal and archaeal community structure and functioning of the soil microbial community in Brazilian Pampa biome. Soil samples were collected at sites with different land-uses (native grassland, native forest, Eucalyptus and Acacia plantation, soybean and watermelon field) and in a typical toposequence in Pampa biome formed by Paleudult, Albaqualf and alluvial soils. The structure of soil microbial community (archaeal and fungal) was evaluated by ribosomal intergenic spacer analysis and soil functional capabilities were measured by microbial biomass carbon and metabolic quotient. We detected different patterns in microbial community driven by land-use change and soil type, showing that both factors are significant drivers of fungal and archaeal community structure and biomass and microbial activity. Fungal community structure was more affected by land-use and archaeal community was more affected by soil type. Irrespective of the land-use or soil type, a large percentage of operational taxonomic unit were shared among the soils. We accepted the hypothesis that both land-use change and soil type are drivers of archaeal and fungal community structure and soil functional capabilities. Moreover, we also suggest the existence of a soil microbial core.

Impact of biotic and a-biotic parameters on structure and function of microbial communities living on sclerotia of the soil-borne pathogenic fungus Rhizoctonia solani

PubMed Central

Zachow, Christin; Grosch, Rita; Berg, Gabriele

2011-01-01

The plant pathogen Rhizoctonia solani is very difficult to control due to its persistent, long-living sclerotial structures in soil. Sclerotia are the main source of infection for Rhizoctonia diseases, which cause high yield losses on a broad host range world-wide. Little is known about micro-organisms associated with sclerotia in soil. Therefore, microbial communities of greenhouse and field incubated Rhizoctonia sclerotia were analysed by a multiphasic approach. Using microbial fingerprints performed by PCR-SSCP, sclerotia-associated bacterial communities showed a high diversity, whereas only a few fungi could be detected. Statistical analysis of fingerprints revealed the influence of soil types, incubation conditions (greenhouse, field), and incubation time (5 and 12 weeks) on the bacterial as well as fungal community. No significant differences were found for the microbial community associated with different Rhizoctonia anastomosis sub-groups (AG 1-IB and AG 1-IC). Rhizoctonia sclerotia are an interesting bio-resource: high proportions of fungal cell-wall degrading isolates as well as those with antagonistic activity towards R. solani were found. While a fraction of 28.4% of sclerotia-associated bacteria (=40 isolates) with antagonistic properties was determined, only 4.4% (=6 isolates) of the fungal isolates were antagonistic. We identified strong antagonists of the genera Bacillus, Enterobacter, Pseudomonas, and Stenotrophomonas, which can be used as biological control agents incorporated in soil or applied to Rhizoctonia host plants. PMID:26109749

Topsoil structure stability in a restored floodplain: Impacts of fluctuating water levels, soil parameters and ecosystem engineers.

PubMed

Schomburg, A; Schilling, O S; Guenat, C; Schirmer, M; Le Bayon, R C; Brunner, P

2018-10-15

Ecosystem services provided by floodplains are strongly controlled by the structural stability of soils. The development of a stable structure in floodplain soils is affected by a complex and poorly understood interplay of hydrological, physico-chemical and biological processes. This paper aims at analysing relations between fluctuating groundwater levels, soil physico-chemical and biological parameters on soil structure stability in a restored floodplain. Water level fluctuations in the soil are modelled using a numerical surface-water-groundwater flow model and correlated to soil physico-chemical parameters and abundances of plants and earthworms. Causal relations and multiple interactions between the investigated parameters are tested through structural equation modelling (SEM). Fluctuating water levels in the soil did not directly affect the topsoil structure stability, but indirectly through affecting plant roots and soil parameters that in turn determine topsoil structure stability. These relations remain significant for mean annual days of complete and partial (>25%) water saturation. Ecosystem functioning of a restored floodplain might already be affected by the fluctuation of groundwater levels alone, and not only through complete flooding by surface water during a flood period. Surprisingly, abundances of earthworms did not show any relation to other variables in the SEM. These findings emphasise that earthworms have efficiently adapted to periodic stress and harsh environmental conditions. Variability of the topsoil structure stability is thus stronger driven by the influence of fluctuating water levels on plants than by the abundance of earthworms. This knowledge about the functional network of soil engineering organisms, soil parameters and fluctuating water levels and how they affect soil structural stability is of fundamental importance to define management strategies of near-natural or restored floodplains in the future. Copyright © 2018 Elsevier B.V. All rights reserved.

Variation in soil enzyme activity as a function of vegetation amount, type, and spatial structure in fire-prone Mediterranean shrublands.

PubMed

Mayor, Ángeles G; Goirán, Silvana B; Vallejo, V Ramón; Bautista, Susana

2016-12-15

Fire-prone Mediterranean shrublands may be seriously threatened by land degradation due to progressive opening of the vegetation cover driven by increasing drought and fire recurrence. However, information about the consequences of this opening process for critical ecosystem functions is scant. In this work, we studied the influence of vegetation amount, type, and spatial pattern in the variation of extracellular soil enzyme activity (acid phosphatase, β-glucosidase, and urease) in fire-prone shrublands in eastern Spain. Soil was sampled in vegetation-patch and open-interpatch microsites in 15 shrubland sites affected by large wildfires in 1991. On average, the activities of the three enzymes were 1.5 (β-glucosidase and urease) to 1.7 (acid phosphatase) times higher in soils under vegetation patches than in adjacent interpatches. In addition, phosphatase activity for both microsites significantly decreased with the fragmentation of the vegetation. This result was attributed to a lower influence of roots -the main source of acid phosphatase- in the bigger interpatches of the sites with lower patch cover, and to feedbacks between vegetation pattern, redistribution of resources, and soil quality during post-fire vegetation dynamics. Phosphatase activity was also 1.2 times higher in patches of resprouter plants than in patches of non-resprouters, probably due to the faster post-fire recovery and older age of resprouter patches in these fire-prone ecosystems. The influence on the studied enzymes of topographic and climatic factors acting at the landscape scale was insignificant. According to our results, variations in the cover, pattern, and composition of vegetation patches may have profound impacts on soil enzyme activity and associated nutrient cycling processes in fire-prone Mediterranean shrublands, particularly in those related to phosphorus. Copyright © 2016 Elsevier B.V. All rights reserved.

Rapid determination of soil quality and earthworm impacts on soil microbial communities using fluorescence-based respirometry

NASA Astrophysics Data System (ADS)

Prendergast-Miller, Miranda T.; Thurston, Josh; Taylor, Joe; Helgason, Thorunn; Ashauer, Roman; Hodson, Mark E.

2017-04-01

We applied a fluorescence-based respirometry method currently devised for aquatic ecotoxicology studies to rapidly measure soil microbial oxygen consumption as a function of soil quality. In this study, soil was collected from an arable wheat field and the field margin. These two soil habitats are known to differ in their soil quality due to differences in their use and management as well as plant, microbial and earthworm community. The earthworm Lumbricus terrestris was incubated in arable or margin soil for three weeks. After this initial phase, a transfer experiment was then conducted to test the hypothesis that earthworm 'migration' alters soil microbial community function and diversity. In this transfer experiment, earthworms incubated in margin soil were transferred to arable soil. The converse transfer (i.e. earthworms incubated in arable soil) was also conducted. Soils of each type with no earthworms were also incubated as controls. After a further four week incubation, the impact of earthworm migration on the soil microbial community was tested by measuring oxygen consumption. Replicated soil slurry subsamples were aliquoted into individual respirometer wells (600 μl volume) on a glass 24-well microplate (Loligo Systems, Denmark) fitted with non-invasive, reusable oxygen sensor spots. The sealed microplate was then attached to an oxygen fluorescence sensor (SDR SensorDish Reader, PreSens, Germany). Oxygen consumption was measured in real-time over a 2 hr period following standard operating procedures. Soil microbial activity was measured with and without an added carbon source (glucose or cellulose, 50 mg C L-1). Using this system, we were able to differentiate between soil type, earthworm treatment and C source. Earthworm-driven impacts on soil microbial oxygen consumption were also supported by changes in soil microbial community structure and diversity revealed using DNA-based sequencing techniques. This method provides a simple and rapid system for measuring soil quality and has the potential for use in a variety of scenarios investigating impacts on soil microbial function.

Application of digital soil mapping in Argentina: An example using apparent soil electrical conductivity

NASA Astrophysics Data System (ADS)

Domenech, Marisa; Castro Franco, Mauricio; Costa, Jose Luis; Aparicio, Virginia

2017-04-01

Apparent soil electrical conductivity (ECa) has been used to capture soil data in several Argentinean Pampas locations. The aim of this study was to generate digital soil mapping on the basis of understanding the relation among ECa and soil properties in three farming fields of the southeast Buenos Aires province. We carried out a geostatistical analysis using ECa data obtained at two depths 0-30cm (ECa_30cm) and 0-90cm (ECa_90cm). Then, two zones derived from ECa measurements were delimited in each field. A soil-sampling scheme was applied in each zone using two depths: 0-30cm and 30-90cm. Texture, Organic Matter Content (OMC), cation-exchange capacity (CEC), pH, saturated paste electrical conductivity (ECe) and effective depth were analyzed. The relation between zones and soil properties were studied using nested factor ANOVA. Our results indicated that clay content and effective depth showed significant differences among ECa_30 zones in all fields. In Argentine Pampas, the presence of petrocalcic horizons limits the effective soil depth at field scale. These horizons vary in depth, structure, hardness and carbonates content. In addition, they influence the spatial pattern of clay content. The relation among other physical and chemical soil properties was not consistent. Two soil unit maps were delimited in each field. These results might support irrigation management due to clay content and effective depth would be controlling soil water storage. Our findings highlight the high accuracy use of soil sensors in developing digital soil mapping at field scale, irrigation management zones, precision agriculture and hydrological modeling in Pampas region conditions.

An examination of the earthquake behaviour of a retaining wall considering soil-structure interaction

NASA Astrophysics Data System (ADS)

Köktan, Utku; Demir, Gökhan; Kerem Ertek, M.

2017-04-01

The earthquake behavior of retaining walls is commonly calculated with pseudo static approaches based on Mononobe-Okabe method. The seismic ground pressure acting on the retaining wall by the Mononobe-Okabe method does not give a definite idea of the distribution of the seismic ground pressure because it is obtained by balancing the forces acting on the active wedge behind the wall. With this method, wave propagation effects and soil-structure interaction are neglected. The purpose of this study is to examine the earthquake behavior of a retaining wall taking into account the soil-structure interaction. For this purpose, time history seismic analysis of the soil-structure interaction system using finite element method has been carried out considering 3 different soil conditions. Seismic analysis of the soil-structure model was performed according to the earthquake record of "1971, San Fernando Pacoima Dam, 196 degree" existing in the library of MIDAS GTS NX software. The results obtained from the analyses show that the soil-structure interaction is very important for the seismic design of a retaining wall. Keywords: Soil-structure interaction, Finite element model, Retaining wall

Leaf litter is an important mediator of soil respiration in an oak-dominated forest

Treesearch

Jared L. DeForest; Jiquan Chen; Steve G. McNulty

2009-01-01

The contribution of the organic (O) horizon to total soil respiration is poorly understood even though it can represent a large source of uncertainty due to seasonal changes in microclimate and O horizon properties due to plant phenology. Our objectives were to partition the CO2 effluxes of litter layer and mineral soil from total soil...

How to interpret rheometry, an innovative technique in soil physicochemistry, correctly - explained by critical users

NASA Astrophysics Data System (ADS)

Holthusen, Dörthe; Paulus, Eloi; Pértile, Patricia; Reichert, José Miguel; José Reinert, Dalvan; Horn, Rainer

2015-04-01

In soil physics some new methods were developed in the past years, e.g. with regard to observe soil structure non-invasively by means of micro-computed tomography, while the range of methods that investigate a soil's behavior in motion, e.g. under the impact of mechanic stresses, was enlarged by rheometry. The adjustment to the specific conditions of soil as a relatively dry and heterogeneous media opened a new field compared to the materials under investigations till then, like concrete or clay dispersions. The potential of this methodology is not fully appreciated yet which we would like to change with the help of our findings and the deduced guidelines. Rheology itself has been making part of soil science already for many years; however, the technical investigation was mostly done at a large scale, by means of triaxial shear or shear frame or compression tests etc. The corresponding measuring device, the rheometer, hence was tested and developed by and for the industries of food, cosmetics, paintings and coatings and only quite recently found to be applicable to soil also. The most interesting aspect was the possibility to combine soil physics with soil chemistry, namely to relate the behavior of soil under mechanical stresses to chemical interactions like e.g. particle charge and friction between single particles by means of an amplitude sweep test. Meanwhile, many different soils of different texture, organic matter and oxides and hydroxides content, and fertilization levels have been investigated at different matric potentials and allowed for a comparatively broad classification system. Therewith, the microstructural stability of a given soil by means of stiffness degradation during an amplitude sweep test can be categorized as a function of texture and matric potential. The micro scale soil stability furthermore influences the processes and thus soil structural stability at larger scales, which supports the investigations of relationships between different scales. Transferability to field situations is given due to the character of the mechanic stress which equals those appearing e.g. under a tractor tire exerting vibrating, compressing and shearing forces. Unfortunately, the multiple results of this single test can impede the use of rheometry as their interpretation requires intensive data analysis. By pointing out the single results and their meaning for soil structure, we aim at facilitating the use of rheometry. We also suggest moderate alterations to take into account more strongly the vertical compression of soil for a more comprehensive implementation of a micro shear test. Additionally, we point out further uses of a rheometer in soil physics, which is the viscosity, i. e. the ability of a fluid to penetrate into a porous system and to be relocated within. Herewith, quite complex fluid characteristics, e.g. of animal manure, anaerobic digestates, but also pesticides in aqueous solution, root mucilage etc. can be determined and applied as improved, because more detailed, model parameters in soil water transport. As a conclusion, our contribution aims at further promoting a promising method for investigating the fundamentals of soil physics at the interface to soil chemistry.

Environmental context affects microbial ecophysiological mechanisms underpinning soil carbon storage under different land use

NASA Astrophysics Data System (ADS)

Malik, A. A.; Puissant, J.; Buckeridge, K. M.; Goodall, T.; Jehmlich, N.; Chowdhury, S.; Gleixner, G.; Griffiths, R.

2017-12-01

Soil microorganisms act as gatekeepers for soil-atmosphere carbon exchange by balancing the accumulation and release of organic matter in soil. Increasing evidence now exists to suggest that microbial biomass contributes significantly to soil organic carbon formation. However, we do not fully understand the microbial mechanisms of organic matter processing and this hinders the development of effective land management strategies to enhance soil carbon storage. Here we empirically link key microbial ecophysiological traits to soil carbon storage in temperate grassland habitats ranging in land use from pristine species-rich grasslands to intensive croplands in 56 different soils across Britain. Physiological mechanisms of soil microorganisms were assessed using stable carbon isotope tracing and soil proteomics. Through spatial patterns and path analysis of structural equation modeling we discern two distinct pH-related mechanisms of soil carbon storage and highlight that the response of these mechanistic indicators is shaped by the environmental context. Land use intensification in low pH soils that increases soil pH above a threshold value ( 6.2) leads to loss of carbon due to increased microbial degradation as a result of lower acid retardation of organic matter decomposition. On the contrary, the loss of carbon through intensification in high pH (> 6.2) soils was linked to decreased microbial biomass and reduced carbon use efficiency that was linked to tradeoffs with stress alleviation and resource acquisition. We conclude that land use intensification-induced changes in soil pH can be used as a proxy to determine the effect of land management strategies on microbial soil carbon cycling processes and emphasize that more extensive land management practices at higher soil pH have greater potential for soil carbon storage through increased microbial metabolic efficiency, whereas in acidic soils abiotic factors exert a greater influence on the fate of soil carbon.

[Effects of land use change on carbon storage in terrestrial ecosystem].

PubMed

Yang, Jingcheng; Han, Xingguo; Huang, Jianhui; Pan, Qingmin

2003-08-01

Terrestrial ecosystem is an important carbon pool, which plays a crucial role in carbon biogeochemical cycle. Human activities such as fossil fuel combustion and land use change have resulted in carbon fluxes from terrestrial ecosystem to the atmosphere, which increased the atmospheric CO2 concentration, and reinforced the greenhouse effect. Land use change affects the structure and function of the terrestrial ecosystem, which causes its change of carbon storage. To a great extent, the change of carbon storage lies in the type of ecosystem and the change of land use patterns. The conversion of forest to agricultural land and pasture causes a large reduction of carbon storage in vegetation and soil, and the decrease of soil carbon concentration is mainly caused by the reduction of detritus, the acceleration of soil organic matter decomposition, and the destroy of physical protection to organic matter due to agricultural practices. The loss of soil organic matter appears at the early stage after deforestation, and the loss rate is influenced by many factors and soil physical, chemical and biological processes. The conversion of agricultural land and pasture to forest and many conservative agricultural practices can sequester atmospheric carbon in vegetation and soil. Vegetation can sequester large amounts of carbon from atmosphere, while carbon accumulation in soil varies greatly because of farming history and soil spatial heterogeneity. Conservative agricultural practices such as no-tillage, reasonable cropping system, and fertilization can influence soil physical and chemical characters, plant growth, quality and quantity of stubble, and soil microbial biomass and its activity, and hence, maintain and increase soil carbon concentration.

Stress, deformation and micromorphological aspects of soil freezing under laboratory conditions

NASA Astrophysics Data System (ADS)

Jetchick, Elizabeth

In this thesis, frost heave is viewed as a process resulting from the interactions between thermodynamic conditions, soil environment controls such as texture, stress/deformation conditions and soil microstructure. A series of laboratory experiments was devised to investigate the links between these aspects. Because a limited number of studies exist on the development of internal stresses and strains in freezing soil, the work focussed on obtaining rheological data using conventional soil strain gauges and prototype stress transducers. A fine-grained unstructured silt was placed in a column (30 cm diameter by 100 cm length) and subjected to freezing and freeze-thaw cycles from the top down, lasting up to three months. Heat and water flows, as well as stresses and strains were monitored. The frozen soil was sectioned at the end of four of the experiments to examine the soil fabrics that had developed. From the experimental results, schematic stress and strain curves are proposed. For a single freeze cycle, compressive normal and tensile normal stresses were recorded simultaneously by the measuring devices within the freezing soil profile. Ice lens inception took place when the stress field changed, a condition which occurred either at the frost front level or at the base of the growing ice lens. Negative and positive strains reflected the different stress states that were sustained below and above the freezing front. Negative strains or soil consolidation took place as stresses increased before the passage of the frost line. Negligible soil strains were recorded as maximum soil consolidation was attained, before soil expansion. Distinct positive strain patterns indicating secondary and continuing heave, were recorded simultaneously throughout a thickness of soil, over a range of temperatures. Ice lens growth mostly took place as secondary frost heave, but continuing heave was measured, and the temperature conditions for both types of heave were determined. During subsequent freeze-thaw cycles, the stress patterns upon freezing were more complex in the second and third cycles due to previous soil structuration. At thaw, the stress pattern was uniform although positive strains in excess of those generated at freezing were recorded over the course of a few hours. Specific soil fabrics and features were evident from a single freeze cycle and for freeze-thaw conditions. Formation mechanisms are proposed for certain fabrics and features. A zonation with depth of these fabrics can be linked to the stress strain history of the soil, revealing the links and feedbacks between rheological processes and cryogenic soil structures.

The Vertical Structure of Urban Soils and Their Convergence Across Cities

EPA Science Inventory

The theoretical patterns for vertical soil structure (e.g., A-B-C ordering of horizons) are a basis for research methods and our understanding of ecosystem structure and function in general. A general understanding of how urban soils differ from non-urban soils vertically is need...

N2O and N2 emissions from contrasting soil environments - interactive effects of soil nitrogen, hydrology and microbial communities

NASA Astrophysics Data System (ADS)

Christiansen, Jesper; Elberling, Bo; Ribbons, Relena; Hedo, Javier; José Fernández Alonso, Maria; Krych, Lukasz; Sandris Nielsen, Dennis; Kitzler, Barbara

2016-04-01

Reactive nitrogen (N) in the environment has doubled relative to the natural global N cycle with consequences for biogeochemical cycling of soil N. Also, climate change is expected to alter precipitation patterns and increase soil temperatures which in Arctic environments may accelerate permafrost thawing. The combination of changes in the soil N cycle and hydrological regimes may alter microbial transformations of soil N with unknown impacts on N2O and N2 emissions from temperate and Arctic soils. We present the first results of soil N2O and N2 emissions, chemistry and microbial communities over soil hydrological gradients (upslope, intermediate and wet) across a global N deposition gradient. The global gradient covered an N-limited high Arctic tundra (Zackenberg-ZA), a pacific temperate rain forest (Vancouver Island-VI) and an N saturated forest in Austria (Klausenleopoldsdorf-KL). The N2O and N2 emissions were measured from intact cores at field moisture in a He-atmosphere system. Extractable NH4+ and NO3-, organic and microbial C and N and potential enzyme-activities were determined on soil samples. Soil genomic DNA was subjected to MiSeq-based tag-encoded 16S rRNA and ITS gene amplicon sequencing for the bacterial and fungal community structure. Similar soil moisture levels were observed for the upslope, intermediate and wet locations at ZA, VI and KL, respectively. Extractable NO3- was highest at the N rich KL and lowest at ZA and showed no trend with soil moisture similar to NH4+. At ZA and VI soil NH4+ was higher than NO3- indicating a tighter N cycling. N2O emissions increased with soil moisture at all sites. The N2O emissions for the wet locations ranked similarly to NO3- with the largest response to soil moisture at KL. N2 emissions were remarkably similar across the sites and increased with soil wetness. Microbial C and N also increased with soil moisture and were overall lowest at the N rich KL site. The potential activity of protease enzyme was site dependent indicating different capacities for N turnover of the microbial community. These findings indicate a positive feedback between increased soil N and wetter soils that promotes N2O relative to N2. These interactions may be site specific due to differential functional diversity of the soil microbial community. Future characterization of the community structure will shed light on the link between the role of microbial groups related to soil N cycling pathways and the resultant partitioning of N2O and N2 emissions in these contrasting environments.

Long-term nitrogen addition leads to loss of species richness due to litter accumulation and soil acidification in a temperate steppe.

PubMed

Fang, Ying; Xun, Fen; Bai, Wenming; Zhang, Wenhao; Li, Linghao

2012-01-01

Although community structure and species richness are known to respond to nitrogen fertilization dramatically, little is known about the mechanisms underlying specific species replacement and richness loss. In an experiment in semiarid temperate steppe of China, manipulative N addition with five treatments was conducted to evaluate the effect of N addition on the community structure and species richness. Species richness and biomass of community in each plot were investigated in a randomly selected quadrat. Root element, available and total phosphorus (AP, TP) in rhizospheric soil, and soil moisture, pH, AP, TP and inorganic N in the soil were measured. The relationship between species richness and the measured factors was analyzed using bivariate correlations and stepwise multiple linear regressions. The two dominant species, a shrub Artemisia frigida and a grass Stipa krylovii, responded differently to N addition such that the former was gradually replaced by the latter. S. krylovii and A. frigida had highly-branched fibrous and un-branched tap root systems, respectively. S. krylovii had higher height than A. frigida in both control and N added plots. These differences may contribute to the observed species replacement. In addition, the analysis on root element and AP contents in rhizospheric soil suggests that different calcium acquisition strategies, and phosphorus and sodium responses of the two species may account for the replacement. Species richness was significantly reduced along the five N addition levels. Our results revealed a significant relationship between species richness and soil pH, litter amount, soil moisture, AP concentration and inorganic N concentration. Our results indicate that litter accumulation and soil acidification accounted for 52.3% and 43.3% of the variation in species richness, respectively. These findings would advance our knowledge on the changes in species richness in semiarid temperate steppe of northern China under N deposition scenario.

Rainfall simulation and Structure-from-Motion photogrammetry for the analysis of soil water erosion in Mediterranean vineyards.

PubMed

Prosdocimi, Massimo; Burguet, Maria; Di Prima, Simone; Sofia, Giulia; Terol, Enric; Rodrigo Comino, Jesús; Cerdà, Artemi; Tarolli, Paolo

2017-01-01

Soil water erosion is a serious problem, especially in agricultural lands. Among these, vineyards deserve attention, because they constitute for the Mediterranean areas a type of land use affected by high soil losses. A significant problem related to the study of soil water erosion in these areas consists in the lack of a standardized procedure of collecting data and reporting results, mainly due to a variability among the measurement methods applied. Given this issue and the seriousness of soil water erosion in Mediterranean vineyards, this works aims to quantify the soil losses caused by simulated rainstorms, and compare them with each other depending on two different methodologies: (i) rainfall simulation and (ii) surface elevation change-based, relying on high-resolution Digital Elevation Models (DEMs) derived from a photogrammetric technique (Structure-from-Motion or SfM). The experiments were carried out in a typical Mediterranean vineyard, located in eastern Spain, at very fine scales. SfM data were obtained from one reflex camera and a smartphone built-in camera. An index of sediment connectivity was also applied to evaluate the potential effect of connectivity within the plots. DEMs derived from the smartphone and the reflex camera were comparable with each other in terms of accuracy and capability of estimating soil loss. Furthermore, soil loss estimated with the surface elevation change-based method resulted to be of the same order of magnitude of that one obtained with rainfall simulation, as long as the sediment connectivity within the plot was considered. High-resolution topography derived from SfM revealed to be essential in the sediment connectivity analysis and, therefore, in the estimation of eroded materials, when comparing them to those derived from the rainfall simulation methodology. The fact that smartphones built-in cameras could produce as much satisfying results as those derived from reflex cameras is a high value added for using SfM. Copyright © 2016 Elsevier B.V. All rights reserved.

The effects of vegetation cover on soil nematode communities in various biotopes disturbed by industrial emissions.

PubMed

Šalamún, Peter; Hanzelová, Vladimíra; Miklisová, Dana; Šestinová, Oľga; Findoráková, Lenka; Kováčik, Peter

2017-08-15

Better understanding of interactions among belowground and aboveground components in biotopes may improve our knowledge about soil ecosystem, and is necessary in environment assessment using indigenous soil organisms. In this study, we proposed that in disturbed biotopes, vegetation play important role in the buffering of contamination impact on soil communities and decrease the ecological pressure on soil biota. To assess the effects of these interactions we compared nematode communities, known for their bioindication abilities, from four types of disturbed and undisturbed biotopes (coniferous forest, permanent grassland, agricultural field, clearings), where the main stress agent was represented by long-term acidic industrial emissions containing heavy metals (As, Cd, Cu, and Pb). To understand the ecological interactions taking place in studied biotopes, we studied abiotic factors (soil properties) and biotic factors (vegetation, nematode communities). Except significant increase in metals total and mobile concentrations in disturbed biotopes soil, we found acidification of soil horizon, mainly in the clearings (pH=3.68), due to SO 2 precipitation. These factors has caused in clearings degradation of native phytocoenoses and decrease in decomposition rate characterized by high amount of organic matter (C ox =4.29%). Nematodes reacts to these conditions by shifts in trophic structure (bacteriovores to fungal feeders), increase in c-p 2 genera (Aphelenchoides, Acrobeloides, and Cephalobus), absence of sensitive groups (c-p 3-5, omnivores, predators), and decrease in ecological indices (SI, MI, MI2-5, H'). Similar contamination was found in forest biotope, but the nematodes composition indicates more suitable conditions; more complex community structure (presence of sensitive trophic and higher c-p groups), higher abundance and indices values, comparable with less stressed field and grassland biotopes. As showed our results, the vegetation undoubtedly plays an important role not only as a resource of services indispensable for the ecosystem, but also as a significant buffer of negative impacts acting within. Copyright © 2017 Elsevier B.V. All rights reserved.

BIOAVAILABILITY OF METALS IN CONTAMINATED SOIL AND DUST

EPA Science Inventory

Due to widespread metal contamination, it is necessary to characterize soils suspected of metal contamination and determine if the metal levels in these soils pose a hazard. Metal toxicity is often not directly related to the total concentration of metals present due to a numb...

MEASUREMENT OF NATURAL RADIONUCLIDES AND EXTERNAL RADIATION EXPOSURE DUE TO FLY ASH FROM A COAL-FIRED POWER PLANT (SPAIN) DEPOSITED ON SOILS. COMPARISON USING TWO DIFFERENT MEASUREMENT TECHNIQUES.

PubMed

Corbacho, J A; Baeza, A

2018-05-17

The evaluation of the radiological impact in soils due to the fly-ash ponds using both in situ techniques and laboratory based measurements is presented. In order to check the in situ techniques capabilities for monitoring this type of industries, a comparison between both techniques was performed. A characterization of external radiation exposure in the fly-ash pond and in its surrounding soils was made. The associated external radiological hazard due to the fly-ash pond has been evaluated. In situ techniques could be used to determine the radiological impact on soils due to fly-ash deposition, but its use could be limited due to the associated uncertainties.

Modelling the Impact of Soil Management on Soil Functions

NASA Astrophysics Data System (ADS)

Vogel, H. J.; Weller, U.; Rabot, E.; Stößel, B.; Lang, B.; Wiesmeier, M.; Urbanski, L.; Wollschläger, U.

2017-12-01

Due to an increasing soil loss and an increasing demand for food and energy there is an enormous pressure on soils as the central resource for agricultural production. Besides the importance of soils for biomass production there are other essential soil functions, i.e. filter and buffer for water, carbon sequestration, provision and recycling of nutrients, and habitat for biological activity. All these functions have a direct feed back to biogeochemical cycles and climate. To render agricultural production efficient and sustainable we need to develop model tools that are capable to predict quantitatively the impact of a multitude of management measures on these soil functions. These functions are considered as emergent properties produced by soils as complex systems. The major challenge is to handle the multitude of physical, chemical and biological processes interacting in a non-linear manner. A large number of validated models for specific soil processes are available. However, it is not possible to simulate soil functions by coupling all the relevant processes at the detailed (i.e. molecular) level where they are well understood. A new systems perspective is required to evaluate the ensemble of soil functions and their sensitivity to external forcing. Another challenge is that soils are spatially heterogeneous systems by nature. Soil processes are highly dependent on the local soil properties and, hence, any model to predict soil functions needs to account for the site-specific conditions. For upscaling towards regional scales the spatial distribution of functional soil types need to be taken into account. We propose a new systemic model approach based on a thorough analysis of the interactions between physical, chemical and biological processes considering their site-specific characteristics. It is demonstrated for the example of soil compaction and the recovery of soil structure, water capacity and carbon stocks as a result of plant growth and biological activity. Coupling of the observed nonlinear interactions allows for modeling the stability and resilience of soil systems in terms of their essential functions.

Combinaison de méthodes géophysiques pour estimer la distribution spatiale des sols affectés par l'excès d'eau

NASA Astrophysics Data System (ADS)

Chaplot, Vincent; Walter, Christian; Curmi, Pierre; Hollier-Larousse, Alain; Robain, Henri

2004-04-01

Geophysical methods have already shown their interest for the continuous characterisation of soils over landscapes, rapidly and, non-intrusively. But in bottomland areas, difficulties are encountered in relating geophysical properties to soil spatial distribution due to large variations in the depth, texture and/or water content of soils. Indeed, respective variations of these parameters can result in ambiguous geophysical responses. For example, a decrease in soil water content, which causes an increase in electrical resistivity, may be offset by an increase in soil clay content, inducing a decrease in resistivity. The objective of this study was to improve the continuous characterisation of soils affected by an excess of water by using a combination of geophysical techniques. Three techniques, the radio-magnetotelluric (RMT), the ground penetrating radar (GPR) and the electrostatic quadrupole (ESQP) were implemented along eight representative transects where soils were extensively described. The soil cover shows a succession from downslope to upslope consisting in fibric Fluvisols, gleyic Fluvisols, and Albefluvisols. None of the geophysical methods allows us to distinguish all soil limits and to estimate the geometry of soil horizons. The ESQP discriminates Fluvisols from Albefluvisols, whereas the RMT above all reveals differences in soil material thickness, which do not permit to discriminate between these soils. In complement, the GPR allows the estimation of the geometry of organic horizons and anthropic structures, such as ditches. Finally, the combination of these three techniques allows us to assess the main features of soil spatial distribution in bottomlands. To cite this article: V. Chaplot et al., C. R. Geoscience 336 (2004).

Measurement of carbon for carbon sequestration and site monitoring

DOE Office of Scientific and Technical Information (OSTI.GOV)

Martin, Madhavi Z; Wullschleger, Stan D; Garten Jr, Charles T

A 2 to 6 degree C increase in global temperature by 2050 has been predicted due to the production of greenhouse gases that is directly linked to human activities. This has encouraged an increase in the international efforts on ways to reduce anthropogenic emissions of greenhouse gases particularly carbon dioxide (CO{sub 2}) as evidence for the link between atmospheric greenhouse gases and climate change has been established. Suggestion that soils and vegetation could be managed to increase their uptake and storage of CO{sub 2}, and thus become 'land carbon sinks' is an incentive for scientists to undertake the ability tomore » measure and quantify the carbon in soils and vegetation to establish base-line quantities present at this time. The verification of the permanence of these carbon sinks has raised some concern regarding the accuracy of their long-term existence. Out of the total percentage of carbon that is potentially sequestered in the terrestrial land mass, only 25% of that is sequestered above ground and almost 75% is hypothesized to be sequestered underground. Soil is composed of solids, liquids, and gases which is similar to a three-phase system. The gross chemical composition of soil organic carbon (SOC) consists of 65% humic substances that are amorphous, dark-colored, complex, polyelectrolyte-like materials that range in molecular weight from a few hundred to several thousand Daltons. The very complex structure of humic and fulvic acid makes it difficult to obtain a spectral signature for all soils in general. The humic acids of different soils have been observed to have polymeric structure, appearing as rings, chains and clusters as seen in electron microscope observations. The humification processes of the soils will decide the sizes of their macromolecules that range from 60-500 angstroms. The percentage of the humus that occurs in the light brown soils is much lower than the humus present in dark brown soils. The humus of forest soils is characterized by a high content of fulvic acids while the humus of peat and grassland soils is high in humic acids. Similarly it is well known that the amount of carbon present in forest soils is lower than the amount present in grassland soils.« less

Linking spatial patterns of soil redistribution traced with 137Cs and soil nutrients in a Mediterranean mountain agroecosystem (NE Spain)

NASA Astrophysics Data System (ADS)

Quijano, Laura; Gaspar, Leticia; Navas, Ana

2016-04-01

Mediterranean mountain agroecosystems are prone to soil loss mainly due to the accelerated erosion as a consequence of human induced changes from agriculture and grazing practices over the last centuries and the climatic conditions (i.e. irregular and scarce precipitations and drought periods). Soil erosion leads to soil degradation inducing the loss of soil functions. The progressive decline of soil functions thereof soil quality is associated to a decrease of soil productivity and can threat the sustainability of cultivated soils. The use of fallout 137Cs as a soil movement tracer provides useful data to identify areas where loss and gain of 137Cs occurs and that of soil. This study aims to address soil movement and soil nutrient dynamics closely related to the status of soil degradation. A rain-fed cereal field (1.6 ha) representative of Mediterranean mountain agricultural landscapes (42°25'41''N 1°13'8''W) was selected to examine the effects of soil redistribution processes on the spatial variability of soil organic carbon (SOC) and nitrogen (SON) and their relationships with soil properties and topographic characteristics. From the hydrological point of view, the field is isolated due to the effect of landscape features and man-made structures. Climate is continental Mediterranean with an average annual rainfall of 500 mm and soils are Calcisols. The reference inventories of 137Cs and soil nutrients were established from 21 soil samples collected in nearby undisturbed areas under typical Mediterranean vegetation cover. A total of 156 bulk soil samples (30-50 cm depth) and 156 topsoil samples (5 cm) were collected on a 10 m grid. 137Cs and soil nutrients loss and gain areas were identified by comparing the reference inventories with the values of inventories at the sampling points. A new approach to characterize and measure active (ACF) and stable (SCF) carbon fraction contents by using a dry combustion method based on the oxidation temperature of carbon fractions to analyze the SOC pool dynamics is presented in this study. A detailed field topographic survey and mapping of the spatial variability of soil properties and nutrient contents from soil analyses displayed similar spatial patterns of 137Cs and soil nutrients that also were directly and significantly correlated (p≤0.01). As much as 70% of the surface of the study field had lower values of 137Cs inventory indicating a predominance of soil loss linked to a generalized loss of soil nutrients. SOC gain was found in less than 1% of the study field and there was a large loss of SON compared to the undisturbed reference site. Higher and significant (p≤0.01) contents of soil nutrients were found in topsoil samples than in the bulk ones. Furthermore, there was an enrichment of the relative contribution of ACF to total SOC in sampling points where there was a 137Cs gain in both bulk and topsoil samples. Understanding patterns of soil nutrients can be useful for developing and implementing land management strategies to preserve soil quality in Mediterranean agricultural areas.

Structure and composition of Fe-OM co-precipitates that form in soil-derived solutions

NASA Astrophysics Data System (ADS)

Fritzsche, Andreas; Schröder, Christian; Wieczorek, Arkadiusz K.; Händel, Matthias; Ritschel, Thomas; Totsche, Kai U.

2015-11-01

Iron oxides represent a substantial fraction of secondary minerals and particularly affect the reactive properties of natural systems in which they formed, e.g. in soils and sediments. Yet, it is still obscure how transient conditions in the solution will affect the properties of in situ precipitated Fe oxides. Transient compositions, i.e. compositions that change with time, arise due to predominant non-equilibrium states in natural systems, e.g. between liquid and solid phases in soils. In this study, we characterize Fe-OM co-precipitates that formed in pH-neutral exfiltrates from anoxic topsoils under transient conditions. We applied soil column outflow experiments, in which Fe2+ was discharged with the effluent from anoxic soil and subsequently oxidized in the effluent due to contact with air. Our study features three novel aspects being unconsidered so far: (i) the transient composition of soil-derived solutions, (ii) that pedogenic Fe oxides instead of Fe salts serve as major source for Fe2+ in soil solution and (iii) the presence of exclusively soil-derived organic and inorganic compounds during precipitation. The experiments were carried out with two topsoil materials that differed in composition, texture and land use. Derived from Mössbauer spectroscopy, broad distributions in quadrupole splittings (0-2 mm s-1) and magnetic hyperfine fields (35-53 T) indicated the presence of low-crystalline ferrihydrite and even lower crystalline Fe phases in all Fe-OM co-precipitates. There was no unequivocal evidence for other Fe oxides, i.e. lepidocrocite and (nano)goethite. The Fe-OM co-precipitates contained inorganic (P, sulfate, silicate, Al, As) and organic compounds (proteins, polysaccharides), which were concurrently discharged from the soils. Their content in the Fe-OM co-precipitates was controlled by their respective concentration in the soil-derived solution. On a molar basis, OC and Fe were the main components in the Fe-OM co-precipitates (OC/Fe ratio = 0.5-2). The elemental composition of the Fe-OM co-precipitates was in accordance with the sequential precipitation of Fe(III)phosphates/arsenates prior to the formation of ferrihydrite. This explains decreasing Si contents in the Fe-OM co-precipitates with increasing availability of P. With respect to constant mean quadrupole splittings and slightly decreasing mean magnetic hyperfine fields, increasing contents of OC, P and Al in the Fe-OM co-precipitates did not further increase the structural disorder of the Fe polyhedra, while the crystallite interactions slightly decreased. Scanning electron microscopy and dynamic light scattering revealed the coincidental presence of variably sized aggregates and a considerable amount of Fe-OM co-precipitates, which remained dispersed in solution for months. Thus, variably composed Fe-OM co-precipitates with highly diverse aggregate sizes and comparably constant poor crystallinity can be expected after the oxidation of Fe2+ in transient, soil-derived solutions.

Climate change-driven treeline advances in the Urals alter soil microbial communities

NASA Astrophysics Data System (ADS)

Djukic, Ika; Moiseev, Pavel; Hagedorn, Frank

2016-04-01

Climatic warming may affect microbial communities and their functions either directly through increased temperatures or indirectly by changes in vegetation. Treelines are temperature-limited vegetation boundaries from tundra to forests. In unmanaged regions of the Ural mountains, there is evidence that the forest-tundra ecotone has shifted upward in response to climate warming during the 20th century. Little is known about the effects of the treeline advances on the microbial structure and function and hence they feedbacks on the belowground carbon and nitrogen cycling In our study, we aimed to estimate how ongoing upward shifts of the treeline ecotone might affect soil biodiversity and its function and hence soil carbon (C) and nitrogen (N) dynamics in the Southern and Polar Ural mountains. Along altitudinal gradients reaching from the tundra to forests, we determined the soil microbial community composition (using Phospholipid Fatty Acids method) and quantified the activity of several extracellular enzymes involved in the C and nutrient cycling. In addition, we measured C pools in biomass and soils and quantified C and N mineralization. The results for the top soils, both in South Urals and in the Polar Ural, indicate a close link between climate change driven vegetation changes and soil microbial communities. The observed changes in microbial structure are induced through the resulting more favorable conditions than due to a shift in litter quality. The activities of chitinase were significantly higher under trees than under herbaceous plants, while activities of cellulase and protease declined with altitude from the tundra to the closed forest. In contrast to enzymatic activities, soil carbon stocks did not change significantly with altitude very likely as a result of a balancing out of increased C inputs from vegetation by an enhanced C output through mineralization with forest expansion. The accelerated organic matter turnover in the forest than in the tundra leads to higher contents of mineral N and net nitrification rates. In turn, the increasing N availability may stimulate plant growth and hence, induce a positive feedback between treeline advances and soil nitrogen cycling through soil microbial communities.

Non-Invasive Methods to Characterize Soil-Plant Interactions at Different Scales

NASA Astrophysics Data System (ADS)

Javaux, M.; Kemna, A.; Muench, M.; Oberdoerster, C.; Pohlmeier, A.; Vanderborght, J.; Vereecken, H.

2006-05-01

Root water uptake is a dynamic and non-linear process, which interacts with the soil natural variability and boundary conditions to generate heterogeneous spatial distributions of soil water. Soil-root fluxes are spatially variable due to heterogeneous gradients and hydraulic connections between soil and roots. While 1-D effective representation of the root water uptake has been successfully applied to predict transpiration and average water content profiles, finer spatial characterization of the water distribution may be needed when dealing with solute transport. Indeed, root water uptake affects the water velocity field, which has an effect on solute velocity and dispersion. Although this variability originates from small-scale processes, these may still play an important role at larger scales. Therefore, in addition to investigate the variability of the soil hydraulic properties, experimental and numerical tools for characterizing root water uptake (and its effects on soil water distribution) from the pore to the field scales are needed to predict in a proper way the solute transport. Obviously, non-invasive and modeling techniques which are helpful to achieve this objective will evolve with the scale of interest. At the pore scale, soil structure and root-soil interface phenomena have to be investigated to understand the interactions between soil and roots. Magnetic resonance imaging may help to monitor water gradients and water content changes around roots while spectral induced polarization techniques may be used to characterize the structure of the pore space. At the column scale, complete root architecture of small plants and water content depletion around roots can be imaged by magnetic resonance. At that scale, models should explicitly take into account the three-dimensional gradient dependency of the root water uptake, to be able to predict solute transport. At larger scales however, simplified models, which implicitly take into account the heterogeneous root water uptake along roots, should be preferred given the complexity of the system. At such scales, electrical resistance tomography or ground-penetrating radar can be used to map the water content changes and derive effective parameters for predicting solute transport.

Assessment of the Impacts of Rice Cropping through a Soil Quality Index

NASA Astrophysics Data System (ADS)

Sione, S. M.; Wilson, M. G.; Paz González, A.

2012-04-01

In Entre Ríos (Argentina), rice cultivation is carried out mainly in Vertisols. Several factors, such as the use of sodium bicarbonate waters for irrigation, the excessive tillage required, and the lack of proper planning for land use, mainly regarding the crop sequence, cause serious impacts on the soil and have an effect on sustainable agriculture. Thus, the development of methodologies to detect these impacts has become a priority. The aim of this study was to standardize soil quality indicators (SQI) and integrate them into an index to evaluate the impacts of the rice production system on soil, at the farm scale. The study was conducted in farms of the traditional rice cultivation area of Entre Ríos province, Argentina. We evaluated a minimum data set consisting of six indicators: structural stability and percolation, total organic matter content (TOM), exchangeable sodium content (ESC), electrical conductivity of saturation extract (ECe) and reaction of the soil (pH). From a database from 75 production lots, we determined the reference values, i.e. limits to ensure the maintenance of long-term productivity and the allowable thresholds for each indicator. The indicators were standardized and integrated into a soil quality index. Five ranges of soil quality were established: very low, low, moderate, high and very high, depending on the values assigned to each SQI. This index allowed differentiating the impact of different crop sequences and showed that the increased participation of rice crop in the rotation resulted in a deterioration of the soil structure due to the decrease in the TOM and to the cumulative increase in ESC caused by the sodium bicarbonate water used for irrigation. Soil management strategies should aim to increase TOM values and to reduce the input of sodium to the exchange complex. A rotation with 50% to 60% of pasture and 40 to 50% of agriculture with a participation of rice lower than 20 to 25% would allow the sustainability of the production system. The use of the so called SQI, i.e. soil quality index, for rice crop production will allow generating early warning of degradation and thus adopting recovery measures.

[Effects of Phyllostachys edulis cultivation on soil bacterial and fungal community structure and diversity].

PubMed

Zhao, Tian Xin; Mao, Xin Wei; Cheng, Min; Chen, Jun Hui; Qin, Hua; Li, Yong Chun; Liang, Chen Fei; Xu, Qiu Fang

2017-11-01

This study examined how soil bacterial and fungal communities responded to the cultivation history of Moso bamboo in Anji and Changxing counties, Huzhou, Zhejiang, China. Soil samples (0-20 and 20-40 cm) were taken from bamboo plantations subjected to different cultivation histories and analyzed the community structures of soil bacterial and fungal by PCR-DGGE methods. It was found that soil bacterial and fungal communities varied greatly with the development of bamboo plantations which converted from Masson pine forest or formed via invading adjacent broadleaf shrub forest. Soil bacterial community structures exhibited a greater response to bamboo cultivation time than fungal community, but bacteria structure of surface soil displayed an ability of resiliency to disturbance and the tendency to recover to the original state. The cultivation time, sampling site and soil layer significantly affected the biodiversity of soil bacteria and fungi, especially the latter two factors. Redundancy analysis (RDA) of soil properties and bacteria or fungi communities showed that there were no accordant factors to drive the alteration of microbial structure, and the first two axes explained less than 65.0% of variance for most of the sampling sites and soil layers, indicating there existed soil parameters besides the five examined that contributed to microbial community alteration.

The Environmental Behavior of Methylene-4,4'-dianiline.

PubMed

Schupp, Thomas; Allmendinger, Hans; Boegi, Christian; Bossuyt, Bart T A; Hidding, Bjoern; Shen, Summer; Tury, Bernard; West, Robert J

2018-06-24

Methylene-4,4'-dianiline (MDA, CAS-No. 101-77-9) is a high production volume intermediate that is mainly processed to diisocyanates and finally polyurethanes. This review summarizes available data concerning the environmental behavior. When released into the environment, MDA distributes into water and subsequently sediment and soil compartments; the air is of little relevance, owed to the low vapor pressure and short atmospheric half-life, which renders MDA non-critical for long-range transport. Biodegradation data present a diverged picture; in some tests, MDA is not readily biodegradable or even not inherent biodegradable; in other tests, MDA turned out to be readily biodegradable (but failing the 10-d window). The history and composition of the inoculum used for testing seem to play an important role, which is underlined by good test results with adapted inoculum. In soil, initially a rapid mineralization is observed, which slows down within the first days due to competitive chemical absorption. The latter results in degradation rates comparable to that of natural organic matter. Under anaerobic conditions, mineralization is poor. Irreversible chemisorption occurs unless soils/sediments are highly reduced. Half-lives due to primary decay do not indicate MDA to be persistent according to the regulatory guidance used in then EU, Canada, or the USA; in Japan, however, due to test results in MITI degradation tests, MDA would be regarded as persistent. The identification of microbial MDA metabolites deserves further research. MDA is not bioaccumulative, but it is toxic to aquatic organisms and mammals. MDA in pore water of soils is rapidly adsorbed on the surface of plant roots. Test runs were too short to draw a final conclusion with regards to transport to stem, leaves, and fruits. Data from structurally similar compounds indicate that such transport would account for less than 1% of the root-adsorbed material.

Agriculturization in the Argentinean Northern Humid Pampas: the Impact on Soil Structure and Runoff

NASA Astrophysics Data System (ADS)

Sasal, M. C.; Léonard, J.; Andriulo, A.; Wilson, M. G.

2012-04-01

Argentina is among the countries with the largest cropped area under no-tillage (NT). No tillage was adopted in the northern Humid Pampas to reduce the widespread soil degradation by water erosion. With the advent of genetically modified soybean varieties, NT has developed exponentially. This evolution, combined with the influence of the international market trend, has resulted in large changes in crop sequence composition toward the disappearance of pastures and the expansion of soybean monoculture. The aim of this work was to evaluate the long-term consequences of these changes on the topsoil structure and the way in which the evolution of soil structure relates to the simplification of the crop sequence and to runoff at a regional scale. We analyzed the topsoil structure of 25 sites with Argiudolls having 4 to 29 consecutive years of NT using the cultural profile approach. An intensification sequence index (ISI) was calculated as the ratio between the length of the growth period and the length of the year. Fifteen natural-rainfall runoff plots (100 m2) with 3.5% slope were used to analyze the relationship between soil structural state, crop sequence and runoff for four years. Four types of soil structures were identified and a general pattern of vertical soil structure organization was revealed. The top centimeters of 72% of the sites were dominated by a granular structure. Platy soil structure development was omnipresent: all sites exhibited a horizontal platy structure (<10 cm thick) developing either directly from the soil surface or from below the granular structure. Below the platy structure layer, a gamma soil structure (with visible structural porosity) was observed in all sites (30-75% of the A horizon), while compacted delta soil structure was detected in localized zones. A significant parabolic relationship (R2=0.60) was found between the number of consecutive years under NT and the proportion of platy structure in the A horizon. The proportion of platy structure increased during the first 15 years of NT, and then the extension of platy structure tended to stabilize and even to decrease after 20 to 25 years. The development of platy soil structure was negatively related to the ISI (R2=0.57) and runoff increased as the proportion of platy structure increased and the proportion of granular structure decreased (R2=0.85). We concluded that high soybean frequency in cropping systems under NT favors the extension of platy soil structure and increases runoff. More than 70% of the agricultural area of the northern Humid Pampas region is currently covered by soybean cultivation, mostly as a single annual crop (ISI=0.38). Our results thus suggest that promoting management practices such as the expansion of wheat/soybean double crop (ISI=0.83) could limit soil structure degradation and reduce runoff and the associated environmental risks.

Impact of roots, mycorrhizas and earthworms on soil physical properties as assessed by shrinkage analysis

NASA Astrophysics Data System (ADS)

Milleret, R.; Le Bayon, R.-C.; Lamy, F.; Gobat, J.-M.; Boivin, P.

2009-07-01

SummarySoil biota such as earthworms, arbuscular mycorrhizal fungi (AMF) and plant roots are known to play a major role in engineering the belowground part of the terrestrial ecosystems, thus strongly influencing the water budget and quality on earth. However, the effect of soil organisms and their interactions on the numerous soil physical properties to be considered are still poorly understood. Shrinkage analysis allows quantifying a large spectrum of soil properties in a single experiment, with small standard errors. The objectives of the present study were, therefore, to assess the ability of the method to quantify changes in soil properties as induced by single or combined effects of leek roots ( Allium porrum), AMF ( Glomus intraradices) and earthworms ( Allolobophora chlorotica). The study was performed on homogenised soil microcosms and the experiments lasted 35 weeks. The volume of the root network and the external fungal hyphae was measured at the end, and undisturbed soil cores were collected. Shrinkage analysis allowed calculating the changes in soil hydro-structural stability, soil plasma and structural pore volumes, soil bulk density and plant available water, and structural pore size distributions. Data analysis revealed different impacts of the experimented soil biota on the soil physical properties. At any water content, the presence of A. chlorotica resulted in a decrease of the specific bulk volume and the hydro-structural stability around 25%, and in a significant increase in the bulk soil density. These changes went with a decrease of the structural pore volumes at any pore size, a disappearing of the thinnest structural pores, a decrease in plant available water, and a hardening of the plasma. On the contrary, leek roots decreased the bulk soil density up to 1.23 g cm -3 despite an initial bulk density of 1.15 g cm -3. This increase in volume was accompanied with a enhanced hydro-structural stability, a larger structural pore volume at any pore size, smaller structural pore radii and an increase in plant available water. Interestingly, a synergistic effect of leek roots and AMF in the absence of the earthworms was highlighted, and this synergistic effect was not observed in presence of earthworms. The structural pore volume generated by root and AMF growth was several orders of magnitude larger than the volume of the organisms. Root exudates as well as other AMF secretion have served as carbon source for bacteria that in turn would enhance soil aggregation and porosity, thus supporting the idea of a self-organization of the soil-plant-microbe complex previously described.

Denitrifying and diazotrophic community responses to artificial warming in permafrost and tallgrass prairie soils

DOE PAGES

Penton, Christopher R.; St. Louis, Derek; Pham, Amanda; ...

2015-07-21

Increasing temperatures have been shown to impact soil biogeochemical processes, although the corresponding changes to the underlying microbial functional communities are not well understood. Alterations in the nitrogen (N) cycling functional component are particularly important as N availability can affect microbial decomposition rates of soil organic matter and influence plant productivity. To assess changes in the microbial component responsible for these changes, the composition of the N-fixing (nifH), and denitrifying (nirS, nirK, nosZ) soil microbial communities was assessed by targeted pyrosequencing of functional genes involved in N cycling in two major biomes where the experimental effect of climate warming ismore » under investigation, a tallgrass prairie in Oklahoma (OK) and the active layer above permafrost in Alaska (AK). Raw reads were processed for quality, translated with frameshift correction, and a total of 313,842 amino acid sequences were clustered and linked to a nearest neighbor using reference datasets. The number of OTUs recovered ranged from 231 (NifH) to 862 (NirK). The N functional microbial communities of the prairie, which had experienced a decade of experimental warming were the most affected with changes in the richness and/or overall structure of NifH, NirS, NirK and NosZ. In contrast, the AK permafrost communities, which had experienced only 1 year of warming, showed decreased richness and a structural change only with the nirK-harboring bacterial community. A highly divergent nirK-harboring bacterial community was identified in the permafrost soils, suggesting much novelty, while other N functional communities exhibited similar relatedness to the reference databases, regardless of site. Lastly, prairie and permafrost soils also harbored highly divergent communities due mostly to differing major populations.« less

Distinct responses of soil microbial communities to elevated CO2 and O3 in a soybean agro-ecosystem

PubMed Central

He, Zhili; Xiong, Jinbo; Kent, Angela D; Deng, Ye; Xue, Kai; Wang, Gejiao; Wu, Liyou; Van Nostrand, Joy D; Zhou, Jizhong

2014-01-01

The concentrations of atmospheric carbon dioxide (CO2) and tropospheric ozone (O3) have been rising due to human activities. However, little is known about how such increases influence soil microbial communities. We hypothesized that elevated CO2 (eCO2) and elevated O3 (eO3) would significantly affect the functional composition, structure and metabolic potential of soil microbial communities, and that various functional groups would respond to such atmospheric changes differentially. To test these hypotheses, we analyzed 96 soil samples from a soybean free-air CO2 enrichment (SoyFACE) experimental site using a comprehensive functional gene microarray (GeoChip 3.0). The results showed the overall functional composition and structure of soil microbial communities shifted under eCO2, eO3 or eCO2+eO3. Key functional genes involved in carbon fixation and degradation, nitrogen fixation, denitrification and methane metabolism were stimulated under eCO2, whereas those involved in N fixation, denitrification and N mineralization were suppressed under eO3, resulting in the fact that the abundance of some eO3-supressed genes was promoted to ambient, or eCO2-induced levels by the interaction of eCO2+eO3. Such effects appeared distinct for each treatment and significantly correlated with soil properties and soybean yield. Overall, our analysis suggests possible mechanisms of microbial responses to global atmospheric change factors through the stimulation of C and N cycling by eCO2, the inhibition of N functional processes by eO3 and the interaction by eCO2 and eO3. This study provides new insights into our understanding of microbial functional processes in response to global atmospheric change in soybean agro-ecosystems. PMID:24108327

Denitrifying and diazotrophic community responses to artificial warming in permafrost and tallgrass prairie soils

DOE Office of Scientific and Technical Information (OSTI.GOV)

Penton, Christopher R.; St. Louis, Derek; Pham, Amanda

Increasing temperatures have been shown to impact soil biogeochemical processes, although the corresponding changes to the underlying microbial functional communities are not well understood. Alterations in the nitrogen (N) cycling functional component are particularly important as N availability can affect microbial decomposition rates of soil organic matter and influence plant productivity. To assess changes in the microbial component responsible for these changes, the composition of the N-fixing (nifH), and denitrifying (nirS, nirK, nosZ) soil microbial communities was assessed by targeted pyrosequencing of functional genes involved in N cycling in two major biomes where the experimental effect of climate warming ismore » under investigation, a tallgrass prairie in Oklahoma (OK) and the active layer above permafrost in Alaska (AK). Raw reads were processed for quality, translated with frameshift correction, and a total of 313,842 amino acid sequences were clustered and linked to a nearest neighbor using reference datasets. The number of OTUs recovered ranged from 231 (NifH) to 862 (NirK). The N functional microbial communities of the prairie, which had experienced a decade of experimental warming were the most affected with changes in the richness and/or overall structure of NifH, NirS, NirK and NosZ. In contrast, the AK permafrost communities, which had experienced only 1 year of warming, showed decreased richness and a structural change only with the nirK-harboring bacterial community. A highly divergent nirK-harboring bacterial community was identified in the permafrost soils, suggesting much novelty, while other N functional communities exhibited similar relatedness to the reference databases, regardless of site. Lastly, prairie and permafrost soils also harbored highly divergent communities due mostly to differing major populations.« less

Plot-scale soil loss estimation with laser scanning and photogrammetry methods

NASA Astrophysics Data System (ADS)

Szabó, Boglárka; Szabó, Judit; Jakab, Gergely; Centeri, Csaba; Szalai, Zoltán; Somogyi, Árpád; Barsi, Árpád

2017-04-01

Structure from Motion (SfM) is an automatic feature-matching algorithm, which nowadays is widely used tool in photogrammetry for geoscience applications. SfM method and parallel terrestrial laser scanning measurements are widespread and they can be well accomplished for quantitative soil erosion measurements as well. Therefore, our main scope was soil erosion characterization quantitatively and qualitatively, 3D visualization and morphological characterization of soil-erosion-dynamics. During the rainfall simulation, the surface had been measured and compared before and after the rainfall event by photogrammetry (SfM - Structure from Motion) and laser scanning (TLS - Terrestrial Laser Scanning) methods. The validation of the given results had been done by the caught runoff and the measured soil-loss value. During the laboratory experiment, the applied rainfall had 40 mm/h rainfall intensity. The size of the plot was 0.5 m2. The laser scanning had been implemented with Faro Focus 3D 120 S type equipment, while the SfM shooting had been carried out by 2 piece SJCAM SJ4000+ type, 12 MP resolution and 4K action cams. The photo-reconstruction had been made with Agisoft Photoscan software, while evaluation of the resulted point-cloud from laser scanning and photogrammetry had been implemented partly in CloudCompare and partly in ArcGIS. The resulted models and the calculated surface changes didn't prove to be suitable for estimating soil-loss, only for the detection of changes in the vertical surface. The laser scanning resulted a quite precise surface model, while the SfM method is affected by errors at the surface model due to other factors. The method needs more adequate technical laboratory preparation.

Effects of terracing on soil and water conservation in China: A meta-analysis

NASA Astrophysics Data System (ADS)

Chen, Die; Wei, Wei

2017-04-01

Terracing has long been considered a powerful strategy for soil and water conservation. However, the efficiency is limited by many factors, such as climate, soil properties, topography, land use, population and socioeconomic status. The aim of this critical review was to discuss the effects of terracing on soil and water conservation in China, using a systematic approach to select peer-reviewed articles published in English and Chinese. 46 individual studies were analyzed, involving six terracing structures (level terraces, slope-separated terraces, slope terraces, reverse-slope terraces, fanya juu terraces and half-moon terraces), a wide geographical range (Northeastern China, Southeastern hilly areas, Southwestern mountain areas and Northwestern-central China), and six land use types (forest, crop trees, cropland, shrub land, grassland and bare land) as well as a series of slope gradients ranging from 3° to 35°. Statistical meta-analysis with runoff for 593 observations and sediment for 636 observations confirmed that terracing had a significant effect on water erosion control. In terms of different terrace structures, runoff and sediment reduction were uppermost on slope-separated terraces. Land use in terraces also played a crucial role in the efficiency of conservation, and tree crops and forest were detected as the most powerful land covers in soil and water conservation due to large aboveground biomass and strong root systems below the ground, which directly reduces the pressure of terraces on rainwater redistribution. In addition, a significant positive correlation between slope gradients (3° 15° and 16° 35°) and terracing efficiency on soil and water conservation was observed. This study revealed the effectiveness and variation of terracing on water erosion control on the national scale, which can serve as a scientific basis to land managers and decision-makers.

Soil structure characterized using computed tomographic images

Treesearch

Zhanqi Cheng; Stephen H. Anderson; Clark J. Gantzer; J. W. Van Sambeek

2003-01-01

Fractal analysis of soil structure is a relatively new method for quantifying the effects of management systems on soil properties and quality. The objective of this work was to explore several methods of studying images to describe and quantify structure of soils under forest management. This research uses computed tomography and a topological method called Multiple...

Afforestation alters community structure of soil fungi.

PubMed

Carson, Jennifer K; Gleeson, Deirdre B; Clipson, Nicholas; Murphy, Daniel V

2010-07-01

Relatively little is known about the effect of afforestation on soil fungal communities. This study demonstrated that afforestation altered fungal community structure and that changes were correlated to pools of soil C. Pasture at three locations on the same soil type was afforested with Eucalyptus globulus or Pinus pinaster. The structure of fungal communities under the three land uses was measured after 13y using automated ribosomal intergenic spacer analysis (ARISA). Afforestation significantly altered the structure of fungal communities. The effect of location on the structure of fungal communities was limited to pasture soils; although these contained the same plant species, the relative composition of each species varied between locations. Differences in the structure of fungal communities between pasture, E. globulus and P. pinaster were significantly correlated with changes in the amount of total organic C and microbial biomass-C in soil. Afforestation of patches of agricultural land may contribute to conserving soil fungi in agricultural landscapes by supporting fungal communities with different composition to agricultural soils. Copyright © 2010 The British Mycological Society. Published by Elsevier Ltd. All rights reserved.

Climate and Edaphic Controls on Humid Tropical Forest Tree Height

NASA Astrophysics Data System (ADS)

Yang, Y.; Saatchi, S. S.; Xu, L.

2014-12-01

Uncertainty in the magnitude and spatial variations of forest carbon density in tropical regions is due to under sampling of forest structure from inventory plots and the lack of regional allometry to estimate the carbon density from structure. Here we quantify the variation of tropical forest structure by using more than 2.5 million measurements of canopy height from systematic sampling of Geoscience Laser Altimeter System (GLAS) satellite observations between 2004 to 2008 and examine the climate and edaphic variables influencing the variations. We used top canopy height of GLAS footprints (~ 0.25 ha) to grid the statistical mean and 90 percentile of samples at 0.5 degrees to capture the regional variability of large trees in tropics. GLAS heights were also aggregated based on a stratification of tropical regions using soil, elevation, and forest types. Both approaches provided consistent patterns of statistically dominant large trees and the least heterogeneity, both as strong drivers of distribution of high biomass forests. Statistical models accounting for spatial autocorrelation suggest that climate, soil and spatial features together can explain more than 60% of the variations in observed tree height information, while climate-only variables explains about one third of the first-order changes in tree height. Soil basics, including physical compositions such as clay and sand contents, chemical properties such as PH values and cation-exchange capacity, as well as biological variables such as organic matters, all present independent but statistically significant relationships to tree height variations. The results confirm other landscape and regional studies that soil fertility, geology and climate may jointly control a majority of the regional variations of forest structure in pan-tropics and influencing both biomass stocks and dynamics. Consequently, other factors such as biotic and disturbance regimes, not included in this study, may have less influence on regional variations but strongly mediate landscape and small-scale forest structure and dynamics.

Influence of livestock density on the amount and structure of soil microbial communities in rangelands of SW Spain

NASA Astrophysics Data System (ADS)

Anguita, Manuel; Pulido, Manuel; Schnabel, Susanne; Lavado-Contador, Francisco; Ortega, Raul; Soriano, Miguel; Miralles, Isabel

2017-04-01

Rangelands (namely dehesas and montados) occupy more than 90,000 km2 of land in SW Iberian Peninsula. Their natural pastures are permanently grazed by 13 millions of domestic animals. The persistence of soils of high quality is a key factor for keeping their environmental and economic sustainability. The role of soil microbial communities in the biodegradation processes of organic compounds is essential to ensure soil fertility in this kind of human-induced ecosystems. Nevertheless, there are few studies dealing the effects of livestock grazing on soil microbial communities. The main goal of this study is therefore to assess the amount and structure of soil microbial communities in rangelands of SW Spain by comparing different grazing intensities. The study was carried out in 4 fenced areas (sampling sites) belonging to privately-owned farms under different grazing intensities: low, moderate and high. One area excluded to grazing for more than 40 years (located in the Monfragüe National Park, Extremadura) was used as reference sampling site. A total number of 30 soil samples (6 each site) were collected in comparable areas with the same lithology and very similar topographical features. Commercial kit to extract DNA from these soil samples was used for metagenomic analysis. We conducted a sequencing of the amplicons V4-V5 of the 16S rRNA gene with Next-Generation Sequencing (NGS) Illumina MiSeq platform and a relative quantity of bacteria and fungi were accomplished by quantitative qPCR of rRNA 16S and ITS1-5.8S, respectively. The results showed that soils with a high livestock density had the highest content of bacteria per gram of soil (4.77E+09), followed by soils with moderate (3.32E+09) and low livestock density (2.80E+09). The lowest content of microorganisms was found in soils excluded to grazing (2.38E+09). However, soils with moderate and low livestock density showed the greatest amount of fungi per gram of soil (2.31E+10 and 2.22E+10, respectively) and soils excluded to grazing recorded the lowest fungi amount (1.21E+10). These data suggest that the increase in grazing intensity favour the proliferation of bacteria and fungi due probably to the increase of organic matter via animal excreta. Taxonomic results revealed a high bacterial presence of phylum Acidobacteria (Gp1, Gp3, and Gp6) and a uniform distribution of the genus WPS-1_genera_incertae_sedis in different states of grazing intensity. Thus, the most abundant genus was Gp1 in soils excluded to grazing and in soils with low and moderate livestock density (14.25%, 16.80% and 12.38%, respectively) while Gp3 (8.76%) was the most abundant genus in soils with high livestock density. Curiously, the genus Gp6 tended to be located in moderate and highly grazed areas instead of those with low livestock density. Our results suggest livestock density might influence the edaphic microbial structure affecting the quantity and type of microorganisms.

Extent and status of mires, peatlands, and organic soils in Europe

NASA Astrophysics Data System (ADS)

Tanneberger, Franziska; Barthelmes, Alexandra; Tegetmeyer, Cosima; Busse, Stephan; Joosten, Hans

2016-04-01

Key words: peatland distribution, peatland drainage, GIS, Global Peatland Database, European Mires Book The relevance of drained peatlands to climate change due to emission of huge amounts of greenhouse gases has recently been recognised e.g. by IPCC, FAO, and the European Union. Oppositely, natural and restored peatlands provide ecosystem services like enhancing biodiversity, nutrient retention, groundwater storage, flood mitigation, and cooling. To evaluate the drainage status of peatlands and organic soils and to develop specific restoration strategies comprehensive and exact geospatial data are needed. The Global Peatland Database (GPD) is hosted at Greifswald Mire Centre (http://tiny.cc/globalpeat). Currently, it provides estimates on location, extent, and drainage status of peatlands and organic soils for 268 countries and regions of the world. Due to the large diversity of definitions and terms for peatlands and organic soils, this mapping follows the broad definition of organic soils from IPCC that gives a minimum soil organic carbon threshold of 12% and considers any depth of the organic layer larger than 10 cm. GIS datasets are continuously collected, specific terms and definitions analysed and the completeness and accuracy of the datasets evaluated. Currently, the GPD contains geospatial data on peatlands and organic soils for all European countries (except Moldova). Recent information on status, distribution, and conservation of mires and peatlands in Europe is summarised in the European Mires Book. It includes descriptions from 49 countries and other geographic entities in Europe. All country chapters follow a generic structure and include also extensive descriptions of national terminology (also in national languages and script) and typologies as well as up to date area statistics and maps. They are complemented by integrative chapters presenting mire classification, mire regionality, peatland use, and mire conservation in Europe. The European Mires Book is a project of the International Mire Conservation Group (IMCG) started in 1990. The volume contains contributions of 130 mire scientists from all over Europe and is published in 2016.

Soil compaction--indicators for the assessment of harmful changes to the soil in the context of the German Federal Soil Protection Act.

PubMed

Lebert, Matthias; Böken, Holger; Glante, Frank

2007-02-01

Soil compaction in agriculture induced by large-scale equipment is of growing concern. Heavy wheel loads used in arable cropping have the potential to cause irreversible damage to the subsoil structure and may lead to harmful soil compaction. In order to sustain or improve soil health or fitness on a sustainable basis, indicators are needed to assess the changes in the soil structure and the respective soil functions. This requires an adequate verification of methods for distinguishing between the impairment of soil structure and the disruption of soil functions, and for the respective subject of protection. In this article the link between existing models of soil physical prognosis, practical guidelines, and criteria for the identification of affected soil structure is demonstrated, and a viable concept to distinguish harmful changes to the soil is presented. The concept consists of methods for soil physical analysis such as "pre-compression stress" and "loading ratio", practical recommendations for best management practice, and an indicator-based model for the identification of harmful subsoil compaction derived from a research project for the German Federal Environmental Agency, making it possible to determine for a respective location the required level of action far beyond the common practice of precautions against harmful soil compaction.

Colonization and community structure of root-associated microorganisms of Sabina vulgaris with soil depth in a semiarid desert ecosystem with shallow groundwater.

PubMed

Taniguchi, Takeshi; Usuki, Hiroyuki; Kikuchi, Junichi; Hirobe, Muneto; Miki, Naoko; Fukuda, Kenji; Zhang, Guosheng; Wang, Linhe; Yoshikawa, Ken; Yamanaka, Norikazu

2012-08-01

Arbuscular mycorrhizal fungi (AMF) have been observed in deep soil layers in arid lands. However, change in AMF community structure with soil depth and vertical distributions of the other root-associated microorganisms are unclear. Here, we examined colonization by AMF and dark septate fungi (DSF), as well as the community structure of AMF and endophytic fungi (EF) and endophytic bacteria (EB) in association with soil depth in a semiarid desert with shallow groundwater. Roots of Sabina vulgaris and soils were collected from surface to groundwater level at 20-cm intervals. Soil chemistry (water content, total N, and available P) and colonization of AMF and DSF were measured. Community structures of AMF, EF, and EB were examined by terminal restriction fragment length polymorphism analysis. AMF colonization decreased with soil depth, although it was mostly higher than 50%. Number of AMF phylotypes decreased with soil depth, but more than five phylotypes were observed at depths up to 100 cm. Number of AMF phylotypes had a significant and positive relationship with soil moisture level within 0-15% of soil water content. DSF colonization was high but limited to soil surface. Number of phylotypes of EF and EB were diverse even in deep soil layers, and the community composition was associated with the colonization and community composition of AMF. This study indicates that AMF species richness in roots decreases but is maintained in deep soil layers in semiarid regions, and change in AMF colonization and community structure associates with community structure of the other root-associated microorganisms.

Effect of calcium cyanamide, ammonium bicarbonate and lime mixture, and ammonia water on survival of Ralstonia solanacearum and microbial community

PubMed Central

Liu, Lijuan; Sun, Chengliang; Liu, Xingxing; He, Xiaolin; Liu, Miao; Wu, Hao; Tang, Caixian; Jin, Chongwei; Zhang, Yongsong

2016-01-01

The inorganic nitrogenous amendments calcium cyanamide (CC), ammonia water (AW), and a mixture of ammonium bicarbonate with lime (A+L) are popularly used as fumigants to control soil-borne disease in China. However, it is unclear which of these fumigants is more effective in controlling R. solanacearum. This present study compared the efficiencies of the three nitrogenous amendments listed above at four nitrogen levels in suppressing the survival of R. solanacearum in soil. The CC showed the best ability to suppress R. solanacearum due to its highest capacity to increase soil and NO2− contents and pH. However, AW was more suitable to controlling bacterial wilt caused by R. solanacearum because it had a lower cost and its application rate of 0.25 g N kg−1 soil could effectively suppress the survival of R. solanacearum. Additionally, soil microbial activity and community populations were restored to their initial state four weeks after the application of each fumigant, indicating that the three fumigants had few detrimental impacts on soil microbial activity and community structure with an exception of the suppression of R. solanacearum. The present study provides guidance for the selection of a suitable alkaline nitrogenous amendment and its application rate in controlling bacterial wilt. PMID:26738601

Effect of calcium cyanamide, ammonium bicarbonate and lime mixture, and ammonia water on survival of Ralstonia solanacearum and microbial community.

PubMed

Liu, Lijuan; Sun, Chengliang; Liu, Xingxing; He, Xiaolin; Liu, Miao; Wu, Hao; Tang, Caixian; Jin, Chongwei; Zhang, Yongsong

2016-01-07

The inorganic nitrogenous amendments calcium cyanamide (CC), ammonia water (AW), and a mixture of ammonium bicarbonate with lime (A+L) are popularly used as fumigants to control soil-borne disease in China. However, it is unclear which of these fumigants is more effective in controlling R. solanacearum. This present study compared the efficiencies of the three nitrogenous amendments listed above at four nitrogen levels in suppressing the survival of R. solanacearum in soil. The CC showed the best ability to suppress R. solanacearum due to its highest capacity to increase soil and NO2(-) contents and pH. However, AW was more suitable to controlling bacterial wilt caused by R. solanacearum because it had a lower cost and its application rate of 0.25 g N kg(-1) soil could effectively suppress the survival of R. solanacearum. Additionally, soil microbial activity and community populations were restored to their initial state four weeks after the application of each fumigant, indicating that the three fumigants had few detrimental impacts on soil microbial activity and community structure with an exception of the suppression of R. solanacearum. The present study provides guidance for the selection of a suitable alkaline nitrogenous amendment and its application rate in controlling bacterial wilt.

Bacterial succession in Antarctic soils of two glacier forefields on Larsemann Hills, East Antarctica.

PubMed

Bajerski, Felizitas; Wagner, Dirk

2013-07-01

Antarctic glacier forefields are extreme environments and pioneer sites for ecological succession. Increasing temperatures due to global warming lead to enhanced deglaciation processes in cold-affected habitats, and new terrain is becoming exposed to soil formation and microbial colonization. However, only little is known about the impact of environmental changes on microbial communities and how they develop in connection to shifting habitat characteristics. In this study, using a combination of molecular and geochemical analysis, we determine the structure and development of bacterial communities depending on soil parameters in two different glacier forefields on Larsemann Hills, East Antarctica. Our results demonstrate that deglaciation-dependent habitat formation, resulting in a gradient in soil moisture, pH and conductivity, leads to an orderly bacterial succession for some groups, for example Cyanobacteria, Bacteroidetes and Deltaproteobacteria in a transect representing 'classical' glacier forefields. A variable bacterial distribution and different composed communities were revealed according to soil heterogeneity in a slightly 'matured' glacier forefield transect, where Gemmatimonadetes, Flavobacteria, Gamma- and Deltaproteobacteria occur depending on water availability and soil depth. Actinobacteria are dominant in both sites with dominance connected to certain trace elements in the glacier forefields. © 2013 Federation of European Microbiological Societies. Published by Blackwell Publishing Ltd. All rights reserved.

Functional microbial community response to nutrient pulses by artificial groundwater recharge practice in surface soils and subsoils.

PubMed

Schütz, Kirsten; Kandeler, Ellen; Nagel, Peter; Scheu, Stefan; Ruess, Liliane

2010-06-01

Subsurface microorganisms are essential constituents of the soil purification processes associated with groundwater quality. In particular, soil enzyme activity determines the biodegradation of organic compounds passing through the soil profile. Transects from surface soil to a depth of 3.5 m were investigated for microbial and chemical soil characteristics at two groundwater recharge sites and one control site. The functional diversity of the microbial community was analyzed via the activity of eight enzymes. Acid phosphomonoesterase was dominant across sites and depths, followed by L-leucine aminopeptidase and beta-glucosidase. Structural [e.g. phospholipid fatty acid (PLFA) pattern] and functional microbial diversities were linked to each other at the nonwatered site, whereas amendment with nutrients (DOC, NO(3)(-)) by flooding uncoupled this relationship. Microbial biomass did not differ between sites, whereas microbial respiration was the highest at the watered sites. Hence, excess nutrients available due to artificial groundwater recharge could not compensate for the limitation by others (e.g. phosphorus as assigned by acid phosphomonoesterase activity). Instead, at a similar microbial biomass, waste respiration via overflow metabolism occurred. In summary, ample supply of carbon by flooding led to a separation of decomposition and microbial growth, which may play an important role in regulating purification processes during groundwater recharge.

Effect of calcium cyanamide, ammonium bicarbonate and lime mixture, and ammonia water on survival of Ralstonia solanacearum and microbial community

NASA Astrophysics Data System (ADS)

Liu, Lijuan; Sun, Chengliang; Liu, Xingxing; He, Xiaolin; Liu, Miao; Wu, Hao; Tang, Caixian; Jin, Chongwei; Zhang, Yongsong

2016-01-01

The inorganic nitrogenous amendments calcium cyanamide (CC), ammonia water (AW), and a mixture of ammonium bicarbonate with lime (A+L) are popularly used as fumigants to control soil-borne disease in China. However, it is unclear which of these fumigants is more effective in controlling R. solanacearum. This present study compared the efficiencies of the three nitrogenous amendments listed above at four nitrogen levels in suppressing the survival of R. solanacearum in soil. The CC showed the best ability to suppress R. solanacearum due to its highest capacity to increase soil and NO2- contents and pH. However, AW was more suitable to controlling bacterial wilt caused by R. solanacearum because it had a lower cost and its application rate of 0.25 g N kg-1 soil could effectively suppress the survival of R. solanacearum. Additionally, soil microbial activity and community populations were restored to their initial state four weeks after the application of each fumigant, indicating that the three fumigants had few detrimental impacts on soil microbial activity and community structure with an exception of the suppression of R. solanacearum. The present study provides guidance for the selection of a suitable alkaline nitrogenous amendment and its application rate in controlling bacterial wilt.

Surface Runoff Estimation Using SMOS Observations, Rain-gauge Measurements and Satellite Precipitation Estimations. Comparison with Model Predictions

NASA Astrophysics Data System (ADS)

Garcia Leal, Julio A.; Lopez-Baeza, Ernesto; Khodayar, Samiro; Estrela, Teodoro; Fidalgo, Arancha; Gabaldo, Onofre; Kuligowski, Robert; Herrera, Eddy

Surface runoff is defined as the amount of water that originates from precipitation, does not infiltrates due to soil saturation and therefore circulates over the surface. A good estimation of runoff is useful for the design of draining systems, structures for flood control and soil utilisation. For runoff estimation there exist different methods such as (i) rational method, (ii) isochrone method, (iii) triangular hydrograph, (iv) non-dimensional SCS hydrograph, (v) Temez hydrograph, (vi) kinematic wave model, represented by the dynamics and kinematics equations for a uniforme precipitation regime, and (vii) SCS-CN (Soil Conservation Service Curve Number) model. This work presents a way of estimating precipitation runoff through the SCS-CN model, using SMOS (Soil Moisture and Ocean Salinity) mission soil moisture observations and rain-gauge measurements, as well as satellite precipitation estimations. The area of application is the Jucar River Basin Authority area where one of the objectives is to develop the SCS-CN model in a spatial way. The results were compared to simulations performed with the 7-km COSMO-CLM (COnsortium for Small-scale MOdelling, COSMO model in CLimate Mode) model. The use of SMOS soil moisture as input to the COSMO-CLM model will certainly improve model simulations.

Effect of Metal Oxide Nanoparticles on Microbial Community Structure and Function in Two Different Soil Types

PubMed Central

Frenk, Sammy; Ben-Moshe, Tal; Dror, Ishai; Berkowitz, Brian; Minz, Dror

2013-01-01

Increased availability of nanoparticle-based products will, inevitably, expose the environment to these materials. Engineered nanoparticles (ENPs) may thus find their way into the soil environment via wastewater, dumpsters and other anthropogenic sources; metallic oxide nanoparticles comprise one group of ENPs that could potentially be hazardous for the environment. Because the soil bacterial community is a major service provider for the ecosystem and humankind, it is critical to study the effects of ENP exposure on soil bacteria. These effects were evaluated by measuring bacterial community activity, composition and size following exposure to copper oxide (CuO) and magnetite (Fe3O4) nanosized (<50 nm) particles. Two different soil types were examined: a sandy loam (Bet-Dagan) and a sandy clay loam (Yatir), under two ENP concentrations (1%, 0.1%). Results indicate that the bacterial community in Bet-Dagan soil was more susceptible to change due to exposure to these ENPs, relative to Yatir soil. More specifically, CuO had a strong effect on bacterial hydrolytic activity, oxidative potential, community composition and size in Bet-Dagan soil. Few effects were noted in the Yatir soil, although 1% CuO exposure did cause a significant decreased oxidative potential and changes to community composition. Fe3O4 changed the hydrolytic activity and bacterial community composition in Bet-Dagan soil but did not affect the Yatir soil bacterial community. Furthermore, in Bet-Dagan soil, abundance of bacteria annotated to OTUs from the Bacilli class decreased after addition of 0.1% CuO but increased with 1% CuO, while in Yatir soil their abundance was reduced with 1% CuO. Other important soil bacterial groups, including Rhizobiales and Sphingobacteriaceae, were negatively affected by CuO addition to soil. These results indicate that both ENPs are potentially harmful to soil environments. Furthermore, it is suggested that the clay fraction and organic matter in different soils interact with the ENPs and reduce their toxicity. PMID:24349575

Glomalin accumulated in seagrass sediments reveals past alterations in soil quality due to land-use change

NASA Astrophysics Data System (ADS)

López-Merino, Lourdes; Serrano, Oscar; Adame, María Fernanda; Mateo, Miguel Ángel; Martínez Cortizas, Antonio

2015-10-01

Arbuscular mycorrhizal fungi (AMF), symbionts with most terrestrial plants, produce glomalin-related soil protein (GRSP), which plays a major role in soil structure and quality. Both fungi hyphae and protein production in soils are affected by perturbations related to land-use changes, implying that GRSP is a sensitive indicator of soil quality. Unfortunately, GRSP degrades within years to decades in oxic environments, preventing its use as palaeoecological proxy. However, GRSP is transported to marine, near-shore anoxic sediments, where it accumulates and remains non-degraded, enabling the assessment of its potential as a palaeoecological proxy for soil ecosystem's health. Exploiting this fact, we have obtained for the first time a long-term record (c. 1250 years) of GRSP content using a Posidonia oceanica seagrass mat sediment core from the Western Mediterranean (Portlligat Bay, Spain). The trends in GRSP content matched well with land-use changes related to agrarian activities reconstructed by pollen analysis. In periods of cultivation, GRSP accumulation in the mat decreased. Given the role played by GRSP, the results suggest that agrarian intensification may have resulted in perturbations to soil quality. Thus, GRSP in seagrass mat sediments can be used to assess long-term trends in continental soil quality induced by human activities. These findings open new possibilities in long-term ecology research, as other anoxic environments could be potentially valid too. Testing them would open the possibility to identify long-term patterns in soil quality and other environmental stressors that could also affect AMF and GRSP production in soils.

The physico-chemical properties and structural characteristics of artificial soil for cut slope restoration in Southwestern China

PubMed Central

Chen, Shunan; Ai, Xiaoyan; Dong, Tengyun; Li, Binbin; Luo, Ruihong; Ai, Yingwei; Chen, Zhaoqiong; Li, Chuanren

2016-01-01

Cut slopes are frequently generated by construction work in hilly areas, and artificial soil is often sprayed onto them to promote ecological rehabilitation. The artificial soil properties are very important for effective management of the slopes. This paper uses fractal and moment methods to characterize soil particle size distribution (PSD) and aggregates composition. The fractal dimension (D) showed linear relationships between clay, silt, and sand contents, with coefficients of determination from 0.843 to 0.875, suggesting that using of D to evaluate the PSD of artificial soils is reasonable. The bias (CS) and peak convex (CE) coefficients showed significant correlations with structure failure rate, moisture content, and total porosity, which validated the moment method to quantitatively describe soil structure. Railway slope (RS) soil has lower organic carbon and soil moisture, and higher pH than natural slope soil. Overall, RS exhibited poor soil structure and physicochemical properties, increasing the risk of soil erosion. Hence, more effective management measures should be adopted to promote the restoration of cut slopes. PMID:26883986

Biochemical Characteristics of Organic Matter in a Guano Concretion of Late Miocene or Pliocene Age from Manchester Parish in Jamaica

PubMed Central

Spence, Adrian; Hanson, Richard E.; Johnson, Toni; Robinson, Claion; Annells, Richard N.

2013-01-01

The biogeochemical fate of organic matter (OM) entering soils is an important issue that must be examined to better understand its roles in nitrogen cycling and as a natural modulator of soil-atmospheric carbon fluxes. Despite these critical roles, there are uncertainties in estimating the contribution of this feedback mechanism due in part to a lack of molecular-level information regarding the origin and labile and refractory inventories of OM in soils. In this study, we used a multi-analytical approach to determine molecular-level information for the occurrence and stabilization of OM in a bird guano concretion of the Late Miocene or Pliocene age in Jamaica. We determined the specific organic structures persisting in the concretion and the possible contribution of fossil organic matter to the OM pool in modern environments. Our results indicate that aliphatic species, presumably of a highly polymethylenic nature [(CH2)n], may significantly contribute to the stable soil-C pool. Although not as significant, proteins and carbohydrates were also enriched in the sample, further suggesting that fossil organic matter may contribute to carbon and nitrogen pools in present day soil organic matter. PMID:23843688

Biochemical characteristics of organic matter in a guano concretion of late miocene or pliocene age from manchester parish in Jamaica.

PubMed

Spence, Adrian; Hanson, Richard E; Johnson, Toni; Robinson, Claion; Annells, Richard N

2013-01-01

The biogeochemical fate of organic matter (OM) entering soils is an important issue that must be examined to better understand its roles in nitrogen cycling and as a natural modulator of soil-atmospheric carbon fluxes. Despite these critical roles, there are uncertainties in estimating the contribution of this feedback mechanism due in part to a lack of molecular-level information regarding the origin and labile and refractory inventories of OM in soils. In this study, we used a multi-analytical approach to determine molecular-level information for the occurrence and stabilization of OM in a bird guano concretion of the Late Miocene or Pliocene age in Jamaica. We determined the specific organic structures persisting in the concretion and the possible contribution of fossil organic matter to the OM pool in modern environments. Our results indicate that aliphatic species, presumably of a highly polymethylenic nature [(CH2)n], may significantly contribute to the stable soil-C pool. Although not as significant, proteins and carbohydrates were also enriched in the sample, further suggesting that fossil organic matter may contribute to carbon and nitrogen pools in present day soil organic matter.

Contribution of nematodes to the structure and function of the soil food web.

PubMed

Ferris, Howard

2010-03-01

As carbon and energy flow through the soil food web they are depleted by the metabolic and production functions of organisms. To be sustained, a "long" food web, with a large biomass at higher trophic levels, must receive a high rate of rhizodeposition or detrital subsidy, or be top-populated by organisms of slow growth and long life cycle. Disturbed soil food webs tend to be bottom heavy and recalcitrant to restoration due to the slow growth of upper predator populations, physical and chemical constraints of the soil matrix, biological imbalances, and the relatively low mobility and invasion potential of soil organisms. The functional roles of nematodes, determined by their metabolic and behavioral activities, may be categorized as ecosystem services, disservices or effect-neutral. Among the disservices attributable to nematodes are overgrazing, which diminishes services of prey organisms, and plant-damaging herbivory, which reduces carbon fixation and availability to other organisms in the food web. Unfortunately, management to ameliorate potential disservices of certain nematodes results in unintended but long-lasting diminution of the services of others. Beneficial roles of nematodes may be enhanced by environmental stewardship that fosters greater biodiversity and, consequently, complementarity and continuity of their services.

Toxicological database of soil and derived products (BDT).

PubMed

Uricchio, Vito Felice

2008-01-01

The Toxicological database of soil and derived products is a project firstly proposed by the Regional Environmental Authority of Apulia. Such a project aims to provide comprehensive and updated information on the regional environmental characteristics, on the pollution state of the regional soil, on the main pollutants and on the reclaim techniques to be used in case of both non-point (agricultural activities) and point (industrial activities) sources of pollution. The project's focus is on the soil pollution because of the fundamental role played by the soil in supporting the biological cycle. Furthermore, the reasons for the project are related both to the reduction of human health risks due to toxic substances ingestion (these substances are present in some ring of the eating chain), and to the recognition of the importance of the groundwater quality safety (primary source of fresh water in many Mediterranean Regions). The essential requirements of a data entry are the following: speed and simplicity of the data entry; reliability and stability of the database structures; speed, easiness and pliability of the queries. Free consultation of the database represents one of the most remarkable advantages coming from the use of an "open" system.

Spatial scale affects the relative role of stochasticity versus determinism in soil bacterial communities in wheat fields across the North China Plain.

PubMed

Shi, Yu; Li, Yuntao; Xiang, Xingjia; Sun, Ruibo; Yang, Teng; He, Dan; Zhang, Kaoping; Ni, Yingying; Zhu, Yong-Guan; Adams, Jonathan M; Chu, Haiyan

2018-02-05

The relative importance of stochasticity versus determinism in soil bacterial communities is unclear, as are the possible influences that alter the balance between these. Here, we investigated the influence of spatial scale on the relative role of stochasticity and determinism in agricultural monocultures consisting only of wheat, thereby minimizing the influence of differences in plant species cover and in cultivation/disturbance regime, extending across a wide range of soils and climates of the North China Plain (NCP). We sampled 243 sites across 1092 km and sequenced the 16S rRNA bacterial gene using MiSeq. We hypothesized that determinism would play a relatively stronger role at the broadest scales, due to the strong influence of climate and soil differences in selecting many distinct OTUs of bacteria adapted to the different environments. In order to test the more general applicability of the hypothesis, we also compared with a natural ecosystem on the Tibetan Plateau. Our results revealed that the relative importance of stochasticity vs. determinism did vary with spatial scale, in the direction predicted. On the North China Plain, stochasticity played a dominant role from 150 to 900 km (separation between pairs of sites) and determinism dominated at more than 900 km (broad scale). On the Tibetan Plateau, determinism played a dominant role from 130 to 1200 km and stochasticity dominated at less than 130 km. Among the identifiable deterministic factors, soil pH showed the strongest influence on soil bacterial community structure and diversity across the North China Plain. Together, 23.9% of variation in soil microbial community composition could be explained, with environmental factors accounting for 19.7% and spatial parameters 4.1%. Our findings revealed that (1) stochastic processes are relatively more important on the North China Plain, while deterministic processes are more important on the Tibetan Plateau; (2) soil pH was the major factor in shaping soil bacterial community structure of the North China Plain; and (3) most variation in soil microbial community composition could not be explained with existing environmental and spatial factors. Further studies are needed to dissect the influence of stochastic factors (e.g., mutations or extinctions) on soil microbial community distribution, which might make it easier to predictably manipulate the microbial community to produce better yield and soil sustainability outcomes.

The role of biochar, natural iron oxides, and nanomaterials as soil amendments for immobilizing metals in shooting range soil.

PubMed

Rajapaksha, Anushka Upamali; Ahmad, Mahtab; Vithanage, Meththika; Kim, Kwon-Rae; Chang, Jun Young; Lee, Sang Soo; Ok, Yong Sik

2015-12-01

High concentration of toxic metals in military shooting range soils poses a significant environmental concern due to the potential release of metals, such as Pb, Cu, and Sb, and hence requires remediation. The current study examined the effectiveness of buffalo weed (Ambrosia trifida L.) biomass and its derived biochars at pyrolytic temperatures of 300 and 700 °C, natural iron oxides (NRE), gibbsite, and silver nanoparticles on metal immobilization together with soil quality after 1-year soil incubation. Destructive (e.g., chemical extractions) and non-destructive (e.g., molecular spectroscopy) methods were used to investigate the immobilization efficacy of each amendment on Pb, Cu, and Sb, and to explore the possible immobilization mechanisms. The highest immobilization efficacy was observed with biochar produced at 300 °C, showing the maximum decreases of bioavailability by 94 and 70% for Pb and Cu, respectively, which were attributed to the abundance of functional groups in the biochar. Biochar significantly increased the soil pH, cation exchange capacity, and P contents. Indeed, the scanning electron microscopic elemental dot mapping and X-ray absorption fine structure spectroscopic (EXAFS) studies revealed associations of Pb with P (i.e., the formation of stable chloropyromorphite [Pb5(PO4)3Cl]) in the biomass- or biochar-amended soils. However, no amendment was effective on Sb immobilization.

Contribution of arbuscular mycorrhizal fungi of sedges to soil aggregation along an altitudinal alpine grassland gradient on the Tibetan Plateau.

PubMed

Li, Xiaoliang; Zhang, Junling; Gai, Jingping; Cai, Xiaobu; Christie, Peter; Li, Xiaolin

2015-08-01

The diversity of arbuscular mycorrhizal fungi (AMF) in sedges on the Tibetan Plateau remains largely unexplored, and their contribution to soil aggregation can be important in understanding the ecological function of AMF in alpine ecosystems. Roots of Kobresia pygmaea C.B. Clarke and Carex pseudofoetida Kük. in alpine Kobresia pastures along an elevational transect (4149-5033 m) on Mount Mila were analysed for AMF diversity. A structural equation model was built to explore the contribution of biotic factors to soil aggregation. Sedges harboured abundant AMF communities covering seven families and some operational taxonomic units are habitat specific. The two plant species hosted similar AMF communities at most altitudes. The relative abundance of the two sedges contributed largely to soil macroaggregates, followed by extraradical mycorrhizal hyphae (EMH) and total glomalin-related soil protein (T-GRSP). The influence of plant richness was mainly due to its indirect influence on T-GRSP and EMH. There was a strong positive correlation between GRSP and soil total carbon and nitrogen. Our results indicate that mycorrhization might not be a major trait leading to niche differentiation of the two co-occurring sedge species. However, AMF contribute to soil aggregation and thus may have the potential to greatly influence C and N cycling in alpine grasslands. © 2015 Society for Applied Microbiology and John Wiley & Sons Ltd.

Carbon-water Cycling in the Critical Zone: Understanding Ecosystem Process Variability Across Complex Terrain

DOE Office of Scientific and Technical Information (OSTI.GOV)

Barnard, Holly; Brooks, Paul

2016-06-16

One of the largest knowledge gaps in environmental science is the ability to understand and predict how ecosystems will respond to future climate variability. The links between vegetation, hydrology, and climate that control carbon sequestration in plant biomass and soils remain poorly understood. Soil respiration is the second largest carbon flux of terrestrial ecosystems, yet there is no consensus on how respiration will change as water availability and temperature co-vary. To address this knowledge gap, we use the variation in soil development and topography across an elevation and climate gradient on the Front Range of Colorado to conduct a naturalmore » experiment that enables us to examine the co-evolution of soil carbon, vegetation, hydrology, and climate in an accessible field laboratory. The goal of this project is to further our ability to combine plant water availability, carbon flux and storage, and topographically driven hydrometrics into a watershed scale predictive model of carbon balance. We hypothesize: (i) landscape structure and hydrology are important controls on soil respiration as a result of spatial variability in both physical and biological drivers: (ii) variation in rates of soil respiration during the growing season is due to corresponding shifts in belowground carbon inputs from vegetation; and (iii) aboveground carbon storage (biomass) and species composition are directly correlated with soil moisture and therefore, can be directly related to subsurface drainage patterns.« less

Examining diel patterns of soil and xylem moisture using electrical resistivity imaging

NASA Astrophysics Data System (ADS)

Mares, Rachel; Barnard, Holly R.; Mao, Deqiang; Revil, André; Singha, Kamini

2016-05-01

The feedbacks among forest transpiration, soil moisture, and subsurface flowpaths are poorly understood. We investigate how soil moisture is affected by daily transpiration using time-lapse electrical resistivity imaging (ERI) on a highly instrumented ponderosa pine and the surrounding soil throughout the growing season. By comparing sap flow measurements to the ERI data, we find that periods of high sap flow within the diel cycle are aligned with decreases in ground electrical conductivity and soil moisture due to drying of the soil during moisture uptake. As sap flow decreases during the night, the ground conductivity increases as the soil moisture is replenished. The mean and variance of the ground conductivity decreases into the summer dry season, indicating drier soil and smaller diel fluctuations in soil moisture as the summer progresses. Sap flow did not significantly decrease through the summer suggesting use of a water source deeper than 60 cm to maintain transpiration during times of shallow soil moisture depletion. ERI captured spatiotemporal variability of soil moisture on daily and seasonal timescales. ERI data on the tree showed a diel cycle of conductivity, interpreted as changes in water content due to transpiration, but changes in sap flow throughout the season could not be interpreted from ERI inversions alone due to daily temperature changes.

The effect of total carbon on microscopic soil properties and implications for crop production

USDA-ARS?s Scientific Manuscript database

Soil structure is a dynamic property affected by physical, chemical, and microbiological processes. Addition of organic matter to soils and the use of different management practices have been reported to impact soil structure and crop production. Moderation in soil temperature and increases in mic...

A Study on Soil Movement Characteristics and Monitoring of Land creeping in the Republic of Korea

NASA Astrophysics Data System (ADS)

Kang, M.; Lee, C.; Woo, C.; Kim, D.; Seo, J.; Kim, K.

2017-12-01

In South Korea, `Landslide' is general phenomenon that the soil is saturated by rainfall and the soil is rapidly falling down at top soil. Landslide Sediment-related disaster is mainly composed of shallow landslide and debris flow in South Korea. However, land creeping is also occurring due to climate change and mountain development. Land creeping is a phenomenon in which a part of the soil layer moves due to the influence of groundwater and external impacts in the mountain slope. It is difficult to detect the phenomenon because the moving speed is very slow and it occurs even without the effect of rainfall. In case land creeping occurs, the damage appears on a large scale. Therefore, it is important to analyze the cause of the occurrence and to cope with it promptly. This study was conducted to investigation soil characteristics and cracks monitoring in order to understand the characteristics and causes of land creeping in South Korea. The crack of land creeping was found in 5ea and the total extension was about 121m. The width and depth range of the crack are each 0.2 0.5m, 0.25 0.45m. Geology, engineering and geomorphological characteristics of the ground were considered. As a result, the land creeping occurred to following reasons; (1) Characteristics of bed rock(anorthosite), (2) Relatively high groundwater level, (3) Maintenance of lower slope when reservoir build, (4) Stratum structure of thinly plied layer. In addition, stability analysis was carried out through the precision ground survey. As a result, instability was found in all sections except for some sections. The method of countermeasures was decided by opinions of field experts. As a result, a monitoring method was suggested in order to understand the change of tension cracks. Therefore, real-time monitoring of landslide early detection system is being implemented. NIFS `unmanned remote monitoring system detects the occurrence of landslides using sensor data and provides early warning information. In order to reduce damage of residents near the hazardous area, the system was introduces centered on places where it is difficult to install landslide control structures like debris control dam. Currently, the system is installed at 2 locations in the land creeping area. Monitoring is being continuously carried out to obtain useful measurement data.

Vertical distribution of bacterial community is associated with the degree of soil organic matter decomposition in the active layer of moist acidic tundra.

PubMed

Kim, Hye Min; Lee, Min Jin; Jung, Ji Young; Hwang, Chung Yeon; Kim, Mincheol; Ro, Hee-Myong; Chun, Jongsik; Lee, Yoo Kyung

2016-11-01

The increasing temperature in Arctic tundra deepens the active layer, which is the upper layer of permafrost soil that experiences repeated thawing and freezing. The increasing of soil temperature and the deepening of active layer seem to affect soil microbial communities. Therefore, information on soil microbial communities at various soil depths is essential to understand their potential responses to climate change in the active layer soil. We investigated the community structure of soil bacteria in the active layer from moist acidic tundra in Council, Alaska. We also interpreted their relationship with some relevant soil physicochemical characteristics along soil depth with a fine scale (5 cm depth interval). The bacterial community structure was found to change along soil depth. The relative abundances of Acidobacteria, Gammaproteobacteria, Planctomycetes, and candidate phylum WPS-2 rapidly decreased with soil depth, while those of Bacteroidetes, Chloroflexi, Gemmatimonadetes, and candidate AD3 rapidly increased. A structural shift was also found in the soil bacterial communities around 20 cm depth, where two organic (upper Oi and lower Oa) horizons are subdivided. The quality and the decomposition degree of organic matter might have influenced the bacterial community structure. Besides the organic matter quality, the vertical distribution of bacterial communities was also found to be related to soil pH and total phosphorus content. This study showed the vertical change of bacterial community in the active layer with a fine scale resolution and the possible influence of the quality of soil organic matter on shaping bacterial community structure.

Soil Diversity as Affected by Land Use in China: Consequences for Soil Protection

PubMed Central

Shangguan, Wei; Gong, Peng; Liang, Lu; Dai, YongJiu; Zhang, Keli

2014-01-01

Rapid land-use change in recent decades in China and its impact on terrestrial biodiversity have been widely studied, particularly at local and regional scales. However, the effect of land-use change on the diversity of soils that support the terrestrial biological system has rarely been studied. Here, we report the first effort to assess the impact of land-use change on soil diversity for the entire nation of China. Soil diversity and land-use effects were analyzed spatially in grids and provinces. The land-use effects on different soils were uneven. Anthropogenic soils occupied approximately 12% of the total soil area, which had already replaced the original natural soils. About 7.5% of the natural soil classes in China were in danger of substantial loss, due to the disturbance of agriculture and construction. More than 80% of the endangered soils were unprotected due to the overlook of soil diversity. The protection of soil diversity should be integrated into future conservation activities. PMID:25250394

Intensive agriculture reduces soil biodiversity across Europe.

PubMed

Tsiafouli, Maria A; Thébault, Elisa; Sgardelis, Stefanos P; de Ruiter, Peter C; van der Putten, Wim H; Birkhofer, Klaus; Hemerik, Lia; de Vries, Franciska T; Bardgett, Richard D; Brady, Mark Vincent; Bjornlund, Lisa; Jørgensen, Helene Bracht; Christensen, Sören; Hertefeldt, Tina D'; Hotes, Stefan; Gera Hol, W H; Frouz, Jan; Liiri, Mira; Mortimer, Simon R; Setälä, Heikki; Tzanopoulos, Joseph; Uteseny, Karoline; Pižl, Václav; Stary, Josef; Wolters, Volkmar; Hedlund, Katarina

2015-02-01

Soil biodiversity plays a key role in regulating the processes that underpin the delivery of ecosystem goods and services in terrestrial ecosystems. Agricultural intensification is known to change the diversity of individual groups of soil biota, but less is known about how intensification affects biodiversity of the soil food web as a whole, and whether or not these effects may be generalized across regions. We examined biodiversity in soil food webs from grasslands, extensive, and intensive rotations in four agricultural regions across Europe: in Sweden, the UK, the Czech Republic and Greece. Effects of land-use intensity were quantified based on structure and diversity among functional groups in the soil food web, as well as on community-weighted mean body mass of soil fauna. We also elucidate land-use intensity effects on diversity of taxonomic units within taxonomic groups of soil fauna. We found that between regions soil food web diversity measures were variable, but that increasing land-use intensity caused highly consistent responses. In particular, land-use intensification reduced the complexity in the soil food webs, as well as the community-weighted mean body mass of soil fauna. In all regions across Europe, species richness of earthworms, Collembolans, and oribatid mites was negatively affected by increased land-use intensity. The taxonomic distinctness, which is a measure of taxonomic relatedness of species in a community that is independent of species richness, was also reduced by land-use intensification. We conclude that intensive agriculture reduces soil biodiversity, making soil food webs less diverse and composed of smaller bodied organisms. Land-use intensification results in fewer functional groups of soil biota with fewer and taxonomically more closely related species. We discuss how these changes in soil biodiversity due to land-use intensification may threaten the functioning of soil in agricultural production systems. © 2014 John Wiley & Sons Ltd.

Changes in soil moisture drive soil methane uptake along a fire regeneration chronosequence in a eucalypt forest landscape.

PubMed

Fest, Benedikt; Wardlaw, Tim; Livesley, Stephen J; Duff, Thomas J; Arndt, Stefan K

2015-11-01

Disturbance associated with severe wildfires (WF) and WF simulating harvest operations can potentially alter soil methane (CH4 ) oxidation in well-aerated forest soils due to the effect on soil properties linked to diffusivity, methanotrophic activity or changes in methanotrophic bacterial community structure. However, changes in soil CH4 flux related to such disturbances are still rarely studied even though WF frequency is predicted to increase as a consequence of global climate change. We measured in-situ soil-atmosphere CH4 exchange along a wet sclerophyll eucalypt forest regeneration chronosequence in Tasmania, Australia, where the time since the last severe fire or harvesting disturbance ranged from 9 to >200 years. On all sampling occasions, mean CH4 uptake increased from most recently disturbed sites (9 year) to sites at stand 'maturity' (44 and 76 years). In stands >76 years since disturbance, we observed a decrease in soil CH4 uptake. A similar age dependency of potential CH4 oxidation for three soil layers (0.0-0.05, 0.05-0.10, 0.10-0.15 m) could be observed on incubated soils under controlled laboratory conditions. The differences in soil CH4 uptake between forest stands of different age were predominantly driven by differences in soil moisture status, which affected the diffusion of atmospheric CH4 into the soil. The observed soil moisture pattern was likely driven by changes in interception or evapotranspiration with forest age, which have been well described for similar eucalypt forest systems in south-eastern Australia. Our results imply that there is a large amount of variability in CH4 uptake at a landscape scale that can be attributed to stand age and soil moisture differences. An increase in severe WF frequency in response to climate change could potentially increase overall forest soil CH4 sinks. © 2015 John Wiley & Sons Ltd.

Investigation of Human Impacts on Surficial Geomorphology in Mountain Parks Using MASTER Data: Preliminary Results

NASA Astrophysics Data System (ADS)

Stefanov, W. L.

2003-12-01

The role of humans as active agents of geomorphic change is obvious at large scales (i.e. urbanization), but is also important at smaller temporal and spatial scales due to activities such as hiking and mountain biking. The effect of these activities on soil disturbance, sediment transport, surface hydrology, and vegetation growth are not well understood in arid regions where the majority of projected population growth is expected to occur. The Phoenix, AZ metropolitan area includes several public mountain parks comprising a wide range of bedrock, structure, soils, and geomorphology. The region includes ideal sites for study as there are parks completely surrounded by urbanization (with a high degree of constant use) as well as parks more removed from the metropolitan core that experience less overall human presence. A primarily field-based approach to this study is impractical due to the large total area of investigation (approximately 1000 square kilometers). Use of high spatial and spectral resolution remotely sensed data represents a useful alternative (or complementary) approach. Airborne MODIS/ASTER Simulator (MASTER) data were obtained at a ground resolution of 5 meters/pixel over Phoenix urban and peri-urban mountain parks during April 2003. This sensor acquires data in 50 bands in the visible through mid-infrared wavelengths and captures primary rock-forming mineral (quartz, feldspar, pyroxene, amphibole, etc.); weathering and pedogenetic mineral (clays, oxides, carbonates); and vegetation spectral features useful for compositional analysis. Preliminary results presented here use MASTER spectral data and band ratios to assess the degree of disturbance of surficial soils (as defined by presence of clay minerals and lack of surface crusts/pavements) associated with high- and low-use areas of mountain parks. These initial results are being used to assess the degree to which lithology, structure, vegetation, soil type, and landscape position modulate the effects of human disturbance of surficial materials.

A Hierarchical Approach Embedding Hydrologic and Population Modeling for a West Nile Virus Vector Prediction

NASA Astrophysics Data System (ADS)

Jian, Y.; Silvestri, S.; Marani, M.; Saltarin, A.; Chillemi, G.

2012-12-01

We applied a hierarchical state space model to predict the abundance of Cx.pipiens (a West Nile Virus vector) in the Po River Delta Region, Northeastern Italy. The study area has large mosquito abundance, due to a favorable environment and climate as well as dense human population. Mosquito data were collected on a weekly basis at more than 20 sites from May to September in 2010 and 2011. Cx.pipiens was the dominant species in our samples, accounting for about 90% of the more than 300,000 total captures. The hydrological component of the model accounted for evapotranspiration, infiltration and deep percolation to infer, in a 0D context, the local dynamics of soil moisture as a direct exogenous forcing of mosquito dynamics. The population model had a Gompertz structure, which included exogenous meteorological forcings and delayed internal dynamics. The models were coupled within a hierarchical statistical structure to overcome the relatively short length of the samples by exploiting the large number of concurrent observations available. The results indicated that Cx.pipiens abundance had significant density dependence at 1 week lag, which approximately matched its development time from larvae to adult. Among the exogenous controls, temperature, daylight hours, and soil moisture explained most of the dynamics. Longer daylight hours and lower soil moisture values resulted in higher abundance. The negative correlation of soil moisture and mosquito population can be explained with the abundance of water in the region (e.g. due to irrigation) and the preference for eutrophic habitats by Cx.pipien. Variations among sites were explained by land use factors as represented by distance to the nearest rice field and NDVI values: the carrying capacity decreased with increased distance to the nearest rice filed, while the maximum growth rate was positively related with NDVI. The model shows a satisfactory performance in predicting (potentially one week in advance) mosquito abundance and particularly its peak timing and magnitude.

[Soil microbial community structure in Picea asperata plantations with different ages in subalpine of western Sichuan, Southwest China.

PubMed

Luo, Da; Liu, Shun; Shi, Zuo Min; Feng, Qiu Hong; Liu, Qian Li; Zhang, Li; Huang, Quan; He, Jian She

2017-02-01

The effects of four Picea asperata plantations with different ages (50-, 38-, 27- and 20-year-old), in subalpine of western Sichuan, on the characteristics of soil microbial diversity and microbial community structure were studied by the method of phospholipid fatty acid (PLFA) profiles. The results showed that, with the increase of age, the contents of soil organic carbon and total nitrogen gradually improved, while Shannon's diversity index and Pielou's evenness index of soil microorganisms increased at first and then decreased. The amounts of microbial total PLFAs, bacterial PLFAs, fungal PLFAs, actinobacterial PLFAs, and arbuscular mycorrhizal fungal (AMF) PLFAs in soils consistently increased with increasing age. The principal component analysis (PCA) indicated that the soil microbial communities in different plantations were structurally distinct from each other. The first principal component (PC1) and the second principal component (PC2) together accounted for 66.8% of total variation of the soil microbial community structure. The redundancy analysis (RDA) of soil microbial community structure and environmental factors showed that soil organic carbon, total nitrogen, total potassium, and fine root mass were the key determinants influencing the microbial community structure. Our study suggested that, with the extension of artificialafforestation time, the soil fertility and microbial biomass were enhanced, and the restoration processes of forest ecosystem were stable.

Soil aggregate stability as an indicator for eco-engineering effectiveness?

NASA Astrophysics Data System (ADS)

Graf, Frank

2015-04-01

Eco-engineering aims at stabilising soil and slopes by applying technical and biological measures. Engineering structures are commonly well defined, immediately usable and operative, and their stability effects quantifiable and verifiable. Differently, the use of plants requires more restrictive boundary conditions and the protection potential is rarely easily calculable and develop-ing as a function of growth rate. Although the use of vegetation is widely appreciated and their stabilising effect recognised, there is an increasing demand on sound facts on its efficiency, in particular, in relation to time. Conclusively, a certain necessity has been recognised to monitor, assess and quantify the effectiveness of ecological restora-tion measures in order to facilitate the transfer of technology and knowledge. Recent theoretical models emphasize the im-portance of taking an integrated monitoring approach that considers multiple variables. However, limited financial and time resources often prevent such comprehensive assessments. A solution to this problem may be to use integrated indicators that reflect multiple aspects and, therefore, allow extensive information on ecosystem status to be gathered in a relatively short time. Among various other indicators, such as fractal dimension of soil particle size distribution or microbiological parameters, soil aggregate stability seems the most appropriate indicator with regard to protecting slopes from superficial soil failure as it is critical to both plant growth and soil structure. Soil aggregation processes play a crucial role in re-establishing soil structure and function and, conclusively, for successful and sustainable re-colonisation. Whereas the key role of soil aggregate stability in ecosystem functioning is well known concerning water, gas, and nutrient fluxes, only limited information is available with regard to soil mechanical and geotechnical aspects. Correspondingly, in the last couple of years several studies have been performed in order to bridge this gap addressing partic-ularly the influence of root growth and mycorrhizal fungi on the resistance of soil aggregates against disintegration and linking it to slope stability. As superficial soil failure is often related to heavy rainstorms and, in this regard, mainly due to water satura-tion, recent investigations focused on the pore water pressure, too. Summarising main results of the different studies a positive relationship between soil aggregate stability and traditional soil mechanical shear strength parameters was found, e.g. given certain soil conditions, an increase in aggregate stability may be equated to an increase of the angle of internal friction Φ' and/or cohesion c'. In addition, almost all investigations showed a strong positive correlation between root length per soil volume and soil aggregate stability. In respect of mycorrhizal fungi, results are not yet as clear. On the one hand it was found that the use of unspecific (commercial) inoculum had no or even a negative effect on root growth within the first vegetation period and, correspondingly, on soil aggregate stability. However, the use of specific plant fungi combinations almost ever resulted in an obvious acceleration of root growth immediately with con-comitant gain of soil stability. As far as pore water pressure is concerned we did not yet find an interpretation that is fairly straightforward and not overly prone to controversy. It looks like soil aggregated by mycorrhized plants does have a higher capacity for building up pressure than such permeated by non-mycorrhized roots. Within this scope results of several studies showing these (inter-) relationships and correlations are presented and differences as well as unexpected results discussed.

Effects of drought on forest soil structure and hydrological soil functions

NASA Astrophysics Data System (ADS)

Gimbel, K.; Puhlmann, H.; Weiler, M.

2012-04-01

Climate change is predicted to severely affect precipitation patterns across central Europe. Soil structure is closely linked to the activity of soil microbiota and plant roots, which modify flow pathways along roots, organic matter and water repellence of soils. Through shrinkage and fracturing of soil aggregates, soil structure is also responding to changing climate (in particular drought) conditions. We investigate the possible effects on biogeochemical and hydropedological processes in response to predicted future reduced precipitation, and the interaction of these processes with the biodiversity of the forest understorey and soil biota. The hypotheses of this study are: (i) drought causes a change in soil structure, which affects hydrological soil functions (water infiltration, uptake and redistribution); (ii) changes in rooting patterns and microbial community composition, in response to drought, influence the hydrological soil functions. To test our hypotheses, we built adaptive roofing systems on nine sites in Germany, which allow a flexible reduction of precipitation in order to achieve the long-term minimum precipitation of a site. Here we present first measurements of our repeated measuring/sampling campaign, which will be conducted over a period of three years. The aim of our experiments is to analyze soil pore architecture and related flow and transport behaviour with dye tracer sprinkling experiments, soil column experiments with stable isotope (deuterium, oxygen-18) enriched water, computed tomography at soil monoliths (~70 l) and multi-step outflow experiments with 100 ml soil cores. Finally, we sketch our idea how to relate the observed temporal changes of soil structure and hydrological soil functions to the observed dynamics of hydrometeorological site conditions, soil moisture and desiccation as well as changes in rooting patterns, herb layer and soil microbiotic communities. The results of this study may help to assess future behavior of the plant-soil-water-microbiology-system and may help to adjust models to predict future response to different precipitation patterns as well as help coping with existing and future emerging challenges in forest management.

Microbial Community and Functional Structure Significantly Varied among Distinct Types of Paddy Soils But Responded Differently along Gradients of Soil Depth Layers

PubMed Central

Bai, Ren; Wang, Jun-Tao; Deng, Ye; He, Ji-Zheng; Feng, Kai; Zhang, Li-Mei

2017-01-01

Paddy rice fields occupy broad agricultural area in China and cover diverse soil types. Microbial community in paddy soils is of great interest since many microorganisms are involved in soil functional processes. In the present study, Illumina Mi-Seq sequencing and functional gene array (GeoChip 4.2) techniques were combined to investigate soil microbial communities and functional gene patterns across the three soil types including an Inceptisol (Binhai), an Oxisol (Leizhou), and an Ultisol (Taoyuan) along four profile depths (up to 70 cm in depth) in mesocosm incubation columns. Detrended correspondence analysis revealed that distinctly differentiation in microbial community existed among soil types and profile depths, while the manifest variance in functional structure was only observed among soil types and two rice growth stages, but not across profile depths. Along the profile depth within each soil type, Acidobacteria, Chloroflexi, and Firmicutes increased whereas Cyanobacteria, β-proteobacteria, and Verrucomicrobia declined, suggesting their specific ecophysiological properties. Compared to bacterial community, the archaeal community showed a more contrasting pattern with the predominant groups within phyla Euryarchaeota, Thaumarchaeota, and Crenarchaeota largely varying among soil types and depths. Phylogenetic molecular ecological network (pMEN) analysis further indicated that the pattern of bacterial and archaeal communities interactions changed with soil depth and the highest modularity of microbial community occurred in top soils, implying a relatively higher system resistance to environmental change compared to communities in deeper soil layers. Meanwhile, microbial communities had higher connectivity in deeper soils in comparison with upper soils, suggesting less microbial interaction in surface soils. Structure equation models were developed and the models indicated that pH was the most representative characteristics of soil type and identified as the key driver in shaping both bacterial and archaeal community structure, but did not directly affect microbial functional structure. The distinctive pattern of microbial taxonomic and functional composition along soil profiles implied functional redundancy within these paddy soils. PMID:28611747

Microbial Community and Functional Structure Significantly Varied among Distinct Types of Paddy Soils But Responded Differently along Gradients of Soil Depth Layers.

PubMed

Bai, Ren; Wang, Jun-Tao; Deng, Ye; He, Ji-Zheng; Feng, Kai; Zhang, Li-Mei

2017-01-01

Paddy rice fields occupy broad agricultural area in China and cover diverse soil types. Microbial community in paddy soils is of great interest since many microorganisms are involved in soil functional processes. In the present study, Illumina Mi-Seq sequencing and functional gene array (GeoChip 4.2) techniques were combined to investigate soil microbial communities and functional gene patterns across the three soil types including an Inceptisol (Binhai), an Oxisol (Leizhou), and an Ultisol (Taoyuan) along four profile depths (up to 70 cm in depth) in mesocosm incubation columns. Detrended correspondence analysis revealed that distinctly differentiation in microbial community existed among soil types and profile depths, while the manifest variance in functional structure was only observed among soil types and two rice growth stages, but not across profile depths. Along the profile depth within each soil type, Acidobacteria , Chloroflexi , and Firmicutes increased whereas Cyanobacteria , β -proteobacteria , and Verrucomicrobia declined, suggesting their specific ecophysiological properties. Compared to bacterial community, the archaeal community showed a more contrasting pattern with the predominant groups within phyla Euryarchaeota , Thaumarchaeota , and Crenarchaeota largely varying among soil types and depths. Phylogenetic molecular ecological network (pMEN) analysis further indicated that the pattern of bacterial and archaeal communities interactions changed with soil depth and the highest modularity of microbial community occurred in top soils, implying a relatively higher system resistance to environmental change compared to communities in deeper soil layers. Meanwhile, microbial communities had higher connectivity in deeper soils in comparison with upper soils, suggesting less microbial interaction in surface soils. Structure equation models were developed and the models indicated that pH was the most representative characteristics of soil type and identified as the key driver in shaping both bacterial and archaeal community structure, but did not directly affect microbial functional structure. The distinctive pattern of microbial taxonomic and functional composition along soil profiles implied functional redundancy within these paddy soils.

Correlation between soil physicochemical properties and vegetation parameters in secondary tropical forest in Sabal, Sarawak, Malaysia

NASA Astrophysics Data System (ADS)

Karyati, K.; Ipor, I. B.; Jusoh, I.; Wasli, M. E.

2018-04-01

The tree growth is influenced by soil morphological and physicochemical properties in the site. The purpose of this study was to describe correlation between soil properties under various stage secondary forests and vegetation parameters, such as floristic structure parameters and floristic diversity indices. The vegetation surveys were conducted in 5, 10, and 20 years old at secondary tropical forests in Sarawak, Malaysia. Nine sub plots sized 20 m × 20 m were established within each study site. The Pearson analysis showed that soil physicochemical properties were significantly correlated to floristic structure parameters and floristic diversity indices. The result of PCA clarified the correlation among most important soil properties, floristic structure parameters, and floristic diversity indices. The PC1 represented cation retention capacity and soil texture which were little affected by the fallow age and its also were correlated by floristic structure and diversity. The PC2 was linked to the levels of soil acidity. This property reflected the remnant effects of ash addition and fallow duration, and the significant correlation were showed among pH (H2O), floristic structure and diversity. The PC3 represented the soil compactness. The soil hardness could be influenced by fallow period and it was also correlated by floristic structure.

Soil Carbon Stocks in a Shifting Ecosystem; Climate Induced Migration of Mangroves into Salt Marsh

NASA Astrophysics Data System (ADS)

Simpson, L.; Osborne, T.; Feller, I. C.

2015-12-01

Across the globe, coastal wetland vegetation distributions are changing in response to climate change. The increase in global average surface temperature has already caused shifts in the structure and distribution of many ecological communities. In parts of the southeastern United States, increased winter temperatures have resulted in the poleward range expansion of mangroves at the expense of salt marsh habitat. Our work aims to document carbon storage in the salt marsh - mangrove ecotone and any potential changes in this reservoir that may ensue due to the shifting range of this habitat. Differences in SOM and C stocks along a latitudinal gradient on the east coast of Florida will be presented. The gradient studied spans 342 km and includes pure mangrove habitat, the salt marsh - mangrove ecotone, and pure salt marsh habitat.This latitudinal gradient gives us an exceptional opportunity to document and investigate ecosystem soil C modifications as mangroves transgress into salt marsh habitat due to climatic change.

Highly specialized microbial diversity in hyper-arid polar desert

PubMed Central

Pointing, Stephen B.; Chan, Yuki; Lacap, Donnabella C.; Lau, Maggie C. Y.; Jurgens, Joel A.; Farrell, Roberta L.

2009-01-01

The McMurdo Dry Valleys in Antarctica are a cold hyperarid polar desert that present extreme challenges to life. Here, we report a culture-independent survey of multidomain microbial biodiversity in McKelvey Valley, a pristine example of the coldest desert on Earth. We demonstrate that life has adapted to form highly-specialized communities in distinct lithic niches occurring concomitantly within this terrain. Endoliths and chasmoliths in sandstone displayed greatest diversity, whereas soil was relatively depauperate and lacked a significant photoautotrophic component, apart from isolated islands of hypolithic cyanobacterial colonization on quartz rocks in soil contact. Communities supported previously unreported polar bacteria and fungi, but archaea were absent from all niches. Lithic community structure did not vary significantly on a landscape scale and stochastic moisture input due to snowmelt resulted in increases in colonization frequency without significantly affecting diversity. The findings show that biodiversity near the cold-arid limit for life is more complex than previously appreciated, but communities lack variability probably due to the high selective pressures of this extreme environment. PMID:19850879

Immediate and long term effects of compaction on the stress-strain behaviour of soil

NASA Astrophysics Data System (ADS)

Noor, Sarah T.; Chowdhury, Prantick; Chowdhury, Tasnim

2018-04-01

This paper explores whether delay in construction after compaction can benefit from the gain in soil’s strength and stability point of view. An experimental investigation has been carried out to examine the gradual development of soil’s shear strength by ageing of mechanically compacted soil at three relative densities. In order to separate the gain in strength due to ageing from that occurring from the reduction in soil moisture, the soil samples prepared in moulds were kept in desiccators for different periods of time (1, 9 and 17 days) before testing unconfined compressive strength test. The soil in densely compacted state is found to gain in strength due to ageing faster than that in medium compacted state. Only due to ageing of 9 days or more, unconfined compressive strength of compacted soil is found about 1.7 to 2.4 times of that attained in day 1 after compaction.

Estimating water retention curves for sandy soils at the Doñana National Park, SW Spain

USDA-ARS?s Scientific Manuscript database

The determination of soil water retention curves (SWRC) in the laboratory is a slow and tedious task, which is especially challenging for sandy soils due to their low water retention capacity and large water content changes for small pressure head differences. Due to spatial variability within larg...

Application of RUSLE method to assess the intensity of erosion due to land use changes in a small Polish Carpathians catchment

NASA Astrophysics Data System (ADS)

Bucała-Hrabia, Anna; Kijowska-Strugała, Małgorzata; Demczuk, Piotr

2017-04-01

Intensity of soil erosion is mainly depends on land cover changes, soil properties, heavy rainfalls and slope gradients. This study compared the influence of land use changes on soil erosion in the Homerka catchment, an area of 19.3 km2 located in the West Polish Carpathians, using GIS techniques such the Revised Universal Soil Loss Equation (RUSLE) method and cartographic materials from 1977, 1987, 1996 and 2009. RUSLE is the most common method which allows to predict the average size of the soil erosion due to specific soil properties, relief as well as rainfall erosivity factor. The period between 1977 and 2009 covers the transformation of the Polish economy from a communist system to a free-market economy after 1989. The analysis indicates an increase in the forest area of the Homerka catchment by 18.14% and a decrease of cultivated land by 82.64%. The grasslands did not change significantly in their area, however, their spatial pattern was very dynamic related to their reduction due to forest expansion and enlargement due to cultivated land abandonment.

Avoidance behaviour of Enchytraeus albidus: effects of benomyl, carbendazim, phenmedipham and different soil types.

PubMed

Amorim, Mónica J B; Römbke, Jörg; Soares, Amadeu M V M

2005-04-01

Enchytraeids are typical inhabitants of many soils, contributing to vital processes of this environmental compartment. Indirectly they are involved in regulating the degradation of organic matter, as well as improving the pore structure of the soil. Due to their behaviour, they are able to avoid unfavourable environmental conditions. Avoidance tests with enchytraeids, initially developed with earthworms by several authors, are quick and easy to perform. With these tests a first assessment of the toxicity of a (contaminated or spiked) soil is possible in just 48 h by using the reaction of the enchytraeids as measurement endpoint. In this period of time the organisms can choose between the control soil and the other soil (a contaminated or spiked or another soil with different physico-chemical properties). In the tests reported here, the enchytraeids were exposed to control soils spiked with the fungicides Benomyl and Carbendazim and the herbicide Phenmedipham. Several chemical concentrations were tested in order to evaluate the avoidance behaviour to toxic substances. In fact, often these short-term screening tests gave results showing avoidance at concentrations in a range similar to the acute test results but, higher than in chronic tests. Further tests are needed to decide whether the results gained in this study can be extrapolated to other chemicals. It is proposed to standardize the Enchytraeid Avoidance Test as it is currently done for the Earthworm Avoidance Test by the International Standard Organization (ISO).

Verrucomicrobial community structure and abundance as indicators for changes in chemical factors linked to soil fertility.

PubMed

Navarrete, Acacio Aparecido; Soares, Tielle; Rossetto, Raffaella; van Veen, Johannes Antonie; Tsai, Siu Mui; Kuramae, Eiko Eurya

2015-09-01

Here we show that verrucomicrobial community structure and abundance are extremely sensitive to changes in chemical factors linked to soil fertility. Terminal restriction fragment length polymorphism fingerprint and real-time quantitative PCR assay were used to analyze changes in verrucomicrobial communities associated with contrasting soil nutrient conditions in tropical regions. In case study Model I ("Slash-and-burn deforestation") the verrucomicrobial community structures revealed disparate patterns in nutrient-enriched soils after slash-and-burn deforestation and natural nutrient-poor soils under an adjacent primary forest in the Amazonia (R = 0.819, P = 0.002). The relative proportion of Verrucomicrobia declined in response to increased soil fertility after slash-and-burn deforestation, accounting on average, for 4 and 2 % of the total bacterial signal, in natural nutrient-poor forest soils and nutrient-enriched deforested soils, respectively. In case study Model II ("Management practices for sugarcane") disparate patterns were revealed in sugarcane rhizosphere sampled on optimal and deficient soil fertility for sugarcane (R = 0.786, P = 0.002). Verrucomicrobial community abundance in sugarcane rhizosphere was negatively correlated with soil fertility, accounting for 2 and 5 % of the total bacterial signal, under optimal and deficient soil fertility conditions for sugarcane, respectively. In nutrient-enriched soils, verrucomicrobial community structures were related to soil factors linked to soil fertility, such as total nitrogen, phosphorus, potassium and sum of bases, i.e., the sum of calcium, magnesium and potassium contents. We conclude that community structure and abundance represent important ecological aspects in soil verrucomicrobial communities for tracking the changes in chemical factors linked to soil fertility under tropical environmental conditions.

Importance of inoculum properties on the structure and growth of bacterial communities during Recolonisation of humus soil with different pH.

PubMed

Pettersson, Marie; Bååth, Erland

2013-08-01

The relationship between community structure and growth and pH tolerance of a soil bacterial community was studied after liming in a reciprocal inoculum study. An unlimed (UL) humus soil with a pH of 4.0 was fumigated with chloroform for 4 h, after which < 1 % of the initial bacterial activity remained. Half of the fumigated soil was experimentally limed (EL) to a pH of 7.6. Both the UL and the EL soil were then reciprocally inoculated with UL soil or field limed (FL) soil with a pH of 6.2. The FL soil was from a 15-year-old experiment. The structural changes were measured on both bacteria in soil and on bacteria able to grow on agar plates using phospholipids fatty acid (PLFA) and denaturing gradient gel electrophoresis (DGGE) analysis. The developing community pH tolerance and bacterial growth were also monitored over time using thymidine incorporation. The inoculum source had a significant impact on both growth and pH tolerance of the bacterial community in the EL soil. These differences between the EL soil inoculated with UL soil and FL soil were correlated to structural changes, as evidenced by both PLFA and DGGE analyses on the soil. Similar correlations were seen to the fraction of the community growing on agar plates. There were, however, no differences between the soil bacterial communities in the unlimed soils with different inocula. This study showed the connection between the development of function (growth), community properties (pH tolerance) and the structure of the bacterial community. It also highlighted the importance of both the initial properties of the community and the selection pressure after environmental changes in shaping the resulting microbial community.

Soil fungi colony growth and community dynamics

NASA Astrophysics Data System (ADS)

Falconer, Ruth E.; Kravchenko, Alexandra; Otten, Wilfred

2010-05-01

Fungi are a major player in soil functioning, they contribute to soil structure formation and shaping of plant communities through their role in nutrient cycling, pathogenesis and symbiosis. Theoretical approaches which have emerged over the years and improved considerably our understanding of above ground plant communities are still lacking below ground. A theoretical framework is needed, such that links soil physics, fungal biology and mathematical biology in order to understand fungal community dynamics and diversity in undisturbed soils. Such a framework is essential if we are to understand how environmental change or soil manipulation impacts biodiversity. Different land use and management practices significantly affect soil environmental characteristics crucial for fungal communities by contributing different quantities and qualities of biomass inputs, generating different levels of soil disturbance, influencing soil temperature and moisture regimes, and affecting structure and geometry of soil pore space. Differences in pore structures generated by long-term differences in land use and management are reflected in notable changes in soil physical and hydraulic properties, including soil porosity, hydraulic conductivity and water retention (Brye and Pirani, 2005). Changes in numbers, shapes, and distributions of soil macropores have been often observed (e.g., Pachepsky et al., 1996; Giménez et al., 1997; Udawatta et al., 2008). However, specific implications of these differences in pore structure and geometries for ability of pathogenic as well as non-pathogenic fungi to colonize soil have not yet been addressed. Recent advances in computed tomography and microscopy facilitate detailed examination of the inner pore structures of undisturbed soil samples as well as visualization of fungal mycelia. Such tools together with modelling generate a new level of understanding of the mechanisms governing fungal behaviour at microscopic scales, and for the first time allow us to examine species interactions in a 3D soil environment.