Grinding into Soft, Powdery Rock

NASA Technical Reports Server (NTRS)

2004-01-01

This hole in a rock dubbed 'Clovis' is the deepest hole drilled so far in any rock on Mars. NASA's Mars Exploration Rover Spirit captured this view with its microscopic imager on martian sol 217 (Aug. 12, 2004) after drilling 8.9 millimeters (0.35 inch) into the rock with its rock abrasion tool. The view is a mosaic of four frames taken by the microscopic imager. The hole is 4.5 centimeters (1.8 inches) in diameter. Clovis is key to a developing story about environmental change on Mars, not only because it is among the softest rocks encountered so far in Gusev Crater, but also because it contains mineral alterations that extend relatively deep beneath its surface. In fact, as evidenced by its fairly crumbly texture, it is possibly the most highly altered volcanic rock ever studied on Mars.

Scientific analysis shows that the rock contains higher levels of the elements sulfur, chlorine, and bromine than are normally encountered in basaltic rocks, such as a rock dubbed 'Humphrey' that Spirit encountered two months after arriving on Mars. Humphrey showed elevated levels of sulfur, chlorine, and bromine only in the outermost 2 millimeters (less than 0.1 inch) of its surface. Clovis shows elevated levels of the same elements along with the associated softness of the rock within a borehole that is 4 times as deep. Scientists hope to compare Clovis to other, less-altered rocks in the vicinity to assess what sort of water-based processes altered the rock. Hypotheses include transport of sulfur, chlorine, and bromine in water vapor in volcanic gases; hydrothermal circulation (flow of volcanically heated water through rock); or saturation in a briny soup containing the same elements.

In this image, very fine-grained material from the rock has clumped together by electrostatic attraction and fallen into the borehole. NASA/JPL/Cornell/USGS

Influences of petrographic parameters on technological properties of greywackes used for crushed stone production

NASA Astrophysics Data System (ADS)

Prikryl, Richard; Cermak, Martin; Krutilova, Katerina

2014-05-01

This study focuses on the influence of petrographic parameters on technological properties of greywackes. These sedimentary rocks make about 27 % of crushed stone market in the Czech Republic. Mainly in Moravia (eastern part of the Czech Republic), greywackes represent almost exclusive high quality aggregate. The behaviour of greywackes varies, however, from quarry to quarry. In this study, we have selected the most important deposits that cover major lithological variation of local greywackes. Studied greywackes were analysed for their petrographic parameters quantitatively (using image analysis of thin sections). The pore space characteristics were determined by using fluorescent dye - epoxy resin impregnated specimens. The studied rocks are composed of subangular and angular quartz grains, lithoclasts (stable rocks: quartzites, and unstable rocks: phylites, metaphylites, siltstones, slates, greywackes, and less frequently acid eruptive rocks), feldspars (orthoclas, microcline, plagioclase), and detrital micas. Detrital and authigenic chlorite has been found as well. The matrix which represents the largest volume of rock-forming components contains a mixture of sericite, chlorite, clay minerals, cements, and clasts in aleuropelitic size. Based on the microscopic examination, all studied rock types were classified as greywacke with fine- to medium-grained massive rock fabric. Only specimen from Bělkovice has shown partly layered structure. Alteration of feldspars and unstable rock fragments represents common feature. Diagenetic features included pressure dissolution of quartz clasts and formation of siliceous and/or calcite cements. Based on the experimental study of technological performance of studied greywackes and its correlation to petrographic features, the average size of clasts and volume of matrix make the driving factors affecting the LA values. The LA values decrease with the increasing of volume of matrix (R = 0.61) and with decreasing average grain size (R = 0.44). The degree of sorting influences LA values as well; more graded greywackes tend to show higher LA values. Regarding PSV, its values increase with increasing volume of quartz clasts.

Integrating sequence stratigraphy and rock-physics to interpret seismic amplitudes and predict reservoir quality

NASA Astrophysics Data System (ADS)

Dutta, Tanima

This dissertation focuses on the link between seismic amplitudes and reservoir properties. Prediction of reservoir properties, such as sorting, sand/shale ratio, and cement-volume from seismic amplitudes improves by integrating knowledge from multiple disciplines. The key contribution of this dissertation is to improve the prediction of reservoir properties by integrating sequence stratigraphy and rock physics. Sequence stratigraphy has been successfully used for qualitative interpretation of seismic amplitudes to predict reservoir properties. Rock physics modeling allows quantitative interpretation of seismic amplitudes. However, often there is uncertainty about selecting geologically appropriate rock physics model and its input parameters, away from the wells. In the present dissertation, we exploit the predictive power of sequence stratigraphy to extract the spatial trends of sedimentological parameters that control seismic amplitudes. These spatial trends of sedimentological parameters can serve as valuable constraints in rock physics modeling, especially away from the wells. Consequently, rock physics modeling, integrated with the trends from sequence stratigraphy, become useful for interpreting observed seismic amplitudes away from the wells in terms of underlying sedimentological parameters. We illustrate this methodology using a comprehensive dataset from channelized turbidite systems, deposited in minibasin settings in the offshore Equatorial Guinea, West Africa. First, we present a practical recipe for using closed-form expressions of effective medium models to predict seismic velocities in unconsolidated sandstones. We use an effective medium model that combines perfectly rough and smooth grains (the extended Walton model), and use that model to derive coordination number, porosity, and pressure relations for P and S wave velocities from experimental data. Our recipe provides reasonable fits to other experimental and borehole data, and specifically improves the predictions of shear wave velocities. In addition, we provide empirical relations on normal compaction depth trends of porosity, velocities, and VP/VS ratio for shale and clean sands in shallow, supra-salt sediments in the Gulf of Mexico. Next, we identify probable spatial trends of sand/shale ratio and sorting as predicted by the conventional sequence stratigraphic model in minibasin settings (spill-and-fill model). These spatial trends are evaluated using well data from offshore West Africa, and the same well data are used to calibrate rock physics models (modified soft-sand model) that provide links between P-impedance and quartz/clay ratio, and sorting. The spatial increase in sand/shale ratio and sorting corresponds to an overall increase in P-impedance, and AVO intercept and gradient. The results are used as a guide to interpret sedimentological parameters from seismic attributes, away from the well locations. We present a quantitative link between carbonate cement and seismic attributes by combining stratigraphie cycles and the rock physics model (modified differential effective medium model). The variation in carbonate cement volume in West Africa can be linked with two distinct stratigraphic cycles: the coarsening-upward cycles and the fining-upward cycles. Cemented sandstones associated with these cycles exhibit distinct signatures on P-impedance vs. porosity and AVO intercept vs. gradient crossplots. These observations are important for assessing reservoir properties in the West Africa as well as in other analogous depositional environments. Finally, we investigate the relationship between seismic velocities and time temperature index (TTI) using basin and petroleum system modeling at Rio Muni basin, West Africa. We find that both VP and VS increase exponentially with TTI. The results can be applied to predict TTI, and thereby thermal maturity, from observed velocities.

Classification scheme for sedimentary and igneous rocks in Gale crater, Mars

NASA Astrophysics Data System (ADS)

Mangold, N.; Schmidt, M. E.; Fisk, M. R.; Forni, O.; McLennan, S. M.; Ming, D. W.; Sautter, V.; Sumner, D.; Williams, A. J.; Clegg, S. M.; Cousin, A.; Gasnault, O.; Gellert, R.; Grotzinger, J. P.; Wiens, R. C.

2017-03-01

Rocks analyzed by the Curiosity rover in Gale crater include a variety of clastic sedimentary rocks and igneous float rocks transported by fluvial and impact processes. To facilitate the discussion of the range of lithologies, we present in this article a petrological classification framework adapting terrestrial classification schemes to Mars compositions (such as Fe abundances typically higher than for comparable lithologies on Earth), to specific Curiosity observations (such as common alkali-rich rocks), and to the capabilities of the rover instruments. Mineralogy was acquired only locally for a few drilled rocks, and so it does not suffice as a systematic classification tool, in contrast to classical terrestrial rock classification. The core of this classification involves (1) the characterization of rock texture as sedimentary, igneous or undefined according to grain/crystal sizes and shapes using imaging from the ChemCam Remote Micro-Imager (RMI), Mars Hand Lens Imager (MAHLI) and Mastcam instruments, and (2) the assignment of geochemical modifiers based on the abundances of Fe, Si, alkali, and S determined by the Alpha Particle X-ray Spectrometer (APXS) and ChemCam instruments. The aims are to help understand Gale crater geology by highlighting the various categories of rocks analyzed by the rover. Several implications are proposed from the cross-comparisons of rocks of various texture and composition, for instance between in place outcrops and float rocks. All outcrops analyzed by the rover are sedimentary; no igneous outcrops have been observed. However, some igneous rocks are clasts in conglomerates, suggesting that part of them are derived from the crater rim. The compositions of in-place sedimentary rocks contrast significantly with the compositions of igneous float rocks. While some of the differences between sedimentary rocks and igneous floats may be related to physical sorting and diagenesis of the sediments, some of the sedimentary rocks (e.g., potassic rocks) cannot be paired with any igneous rocks analyzed so far. In contrast, many float rocks, which cannot be classified from their poorly defined texture, plot on chemistry diagrams close to float rocks defined as igneous from their textures, potentially constraining their nature.

Classification scheme for sedimentary and igneous rocks in Gale crater, Mars

DOE PAGES

Mangold, Nicolas; Schmidt, Mariek E.; Fisk, Martin R.; ...

2016-11-05

Rocks analyzed by the Curiosity rover in Gale crater include a variety of clastic sedimentary rocks and igneous float rocks transported by fluvial and impact processes. Here, to facilitate the discussion of the range of lithologies, we present in this article a petrological classification framework adapting terrestrial classification schemes to Mars compositions (such as Fe abundances typically higher than for comparable lithologies on Earth), to specific Curiosity observations (such as common alkali-rich rocks), and to the capabilities of the rover instruments. Mineralogy was acquired only locally for a few drilled rocks, and so it does not suffice as a systematicmore » classification tool, in contrast to classical terrestrial rock classification. The core of this classification involves (1) the characterization of rock texture as sedimentary, igneous or undefined according to grain/crystal sizes and shapes using imaging from the ChemCam Remote Micro-Imager (RMI), Mars Hand Lens Imager (MAHLI) and Mastcam instruments, and (2) the assignment of geochemical modifiers based on the abundances of Fe, Si, alkali, and S determined by the Alpha Particle X-ray Spectrometer (APXS) and ChemCam instruments. The aims are to help understand Gale crater geology by highlighting the various categories of rocks analyzed by the rover. Several implications are proposed from the cross-comparisons of rocks of various texture and composition, for instance between in place outcrops and float rocks. All outcrops analyzed by the rover are sedimentary; no igneous outcrops have been observed. However, some igneous rocks are clasts in conglomerates, suggesting that part of them are derived from the crater rim. The compositions of in-place sedimentary rocks contrast significantly with the compositions of igneous float rocks. While some of the differences between sedimentary rocks and igneous floats may be related to physical sorting and diagenesis of the sediments, some of the sedimentary rocks (e.g., potassic rocks) cannot be paired with any igneous rocks analyzed so far. Finally, in contrast, many float rocks, which cannot be classified from their poorly defined texture, plot on chemistry diagrams close to float rocks defined as igneous from their textures, potentially constraining their nature.« less

Classification scheme for sedimentary and igneous rocks in Gale crater, Mars

DOE Office of Scientific and Technical Information (OSTI.GOV)

Mangold, Nicolas; Schmidt, Mariek E.; Fisk, Martin R.

Rocks analyzed by the Curiosity rover in Gale crater include a variety of clastic sedimentary rocks and igneous float rocks transported by fluvial and impact processes. Here, to facilitate the discussion of the range of lithologies, we present in this article a petrological classification framework adapting terrestrial classification schemes to Mars compositions (such as Fe abundances typically higher than for comparable lithologies on Earth), to specific Curiosity observations (such as common alkali-rich rocks), and to the capabilities of the rover instruments. Mineralogy was acquired only locally for a few drilled rocks, and so it does not suffice as a systematicmore » classification tool, in contrast to classical terrestrial rock classification. The core of this classification involves (1) the characterization of rock texture as sedimentary, igneous or undefined according to grain/crystal sizes and shapes using imaging from the ChemCam Remote Micro-Imager (RMI), Mars Hand Lens Imager (MAHLI) and Mastcam instruments, and (2) the assignment of geochemical modifiers based on the abundances of Fe, Si, alkali, and S determined by the Alpha Particle X-ray Spectrometer (APXS) and ChemCam instruments. The aims are to help understand Gale crater geology by highlighting the various categories of rocks analyzed by the rover. Several implications are proposed from the cross-comparisons of rocks of various texture and composition, for instance between in place outcrops and float rocks. All outcrops analyzed by the rover are sedimentary; no igneous outcrops have been observed. However, some igneous rocks are clasts in conglomerates, suggesting that part of them are derived from the crater rim. The compositions of in-place sedimentary rocks contrast significantly with the compositions of igneous float rocks. While some of the differences between sedimentary rocks and igneous floats may be related to physical sorting and diagenesis of the sediments, some of the sedimentary rocks (e.g., potassic rocks) cannot be paired with any igneous rocks analyzed so far. Finally, in contrast, many float rocks, which cannot be classified from their poorly defined texture, plot on chemistry diagrams close to float rocks defined as igneous from their textures, potentially constraining their nature.« less

Sorting Out the Ocean Crust Deep Biosphere with Single Cell Omics Approaches

NASA Astrophysics Data System (ADS)

Orcutt, B.; D'Angelo, T.; Goordial, J.; Jones, R. M.; Carr, S. A.

2017-12-01

Although oceanic crust comprises a large habitat for subsurface life, the structure, function, and dynamics of microbial communities living on rocks in the subsurface are poorly understood. Single cell level approaches can overcome limitations of low biomass in subsurface systems. Coupled with incubation experiments with amino acid orthologs, single cell level sorting can reveal high resolution information about identity, functional potential, and growth. Leveraging collaboration with the Single Cell Genomics Center and the Facility for Aquatic Cytometry at Bigelow Laboratory, we present recent results from single cell level sorting and -omics sequencing from several crustal environments, including the Atlantis Massif and the Juan de Fuca Ridge flank. We will also highlight new experiments conducted with samples recovered from the flank of the Mid-Atlantic Ridge.

Assessment of Aeolis Palus stratigraphic relationships based on bench-forming strata in the Kylie and the Kimberley regions of Gale crater, Mars

NASA Astrophysics Data System (ADS)

Williams, Rebecca M. E.; Malin, Michael C.; Stack, Kathryn M.; Rubin, David M.

2018-07-01

The stratigraphic context of rock layers is a critical piece of information needed for accurate reconstruction of their geologic history. Although sedimentary rocks are widespread in Gale crater, efforts to deduce stratigraphic relationships of rocks were challenging early in the Mars Science Laboratory mission because vertical bedrock exposures were relatively rare along the first ∼3 km the rover traversed across Aeolis Palus. Potential insights into the three-dimensional configuration of rock layers were made once the rover passed Dingo Gap, especially in the informally-named Kylie and Kimberley regions. Here, the terrain exhibits low relief ( < 10 m) cliffs, some of which are continuous over lengths > 75 m. Curiosity Mastcam and Navcam images show that the cliffs are capped by resistant, bench-forming rock layers corresponding to two facies: a poorly sorted, weakly stratified pebble conglomerate, and a massive, dark-toned, vuggy sandstone. In places, the inclination of the topographic surface (northward ∼2° to 3°) is similar to the apparent dip of the underlying strata, suggesting the presence of dip slopes in an area inferred to be generally flat-lying, conformable rock units. Further, we assessed potential strata correlations via plane-fitting exercises and a regional comparison to other capping strata. We speculate that bench-forming strata in the study region could be part of a widespread package of draping strata (the Siccar Point group) that post-dates deposition and exhumation of the lower strata of Mount Sharp.

Rock fall dynamics and deposition: an integrated analysis of the 2009 Ahwiyah Point rock fall, Yosemite National Park, USA.

USGS Publications Warehouse

Valerie L. Zimmer,; Collins, Brian D.; Greg M. Stock,; Nicholas Sitar,

2012-01-01

We analyzed a combination of airborne and terrestrial LiDAR, high-resolution photography, seismic, and acoustic data in order to gain insights into the initiation, dynamics, and talus deposition of a complex rock fall. A large (46 700 m3) rock fall originated from near Ahwiyah Point in eastern Yosemite Valley and fell a total of 730 m to the valley floor on 28 March 2009. Analyses of remote sensing, seismic, and acoustic data were integrated to reconstruct the rock fall, which consisted of (1) the triggering of a 25 400 m3 rock block in an area of intersecting and sometimes highly weathered joint planes, (2) the sliding and subsequent ballistic trajectory of the block from a steeply dipping ledge, (3) dislodging of additional rock from the cliff surface from beneath the rock fall source area, (4) a mid-cliff ledge impact that detached a volume of rock nearly equivalent in volume to the initial block, (5) sliding of the deteriorating rock mass down the remainder of the cliff, and (6) final impact at the base of the cliff that remobilized the existing talus downward and outward and produced an airblast that knocked down hundreds of trees. The depositional geomorphology indicates that the porosity of the fresh talus is significantly lower than that expected for typical blocky talus slopes, likely because the rock debris from this event was pulverized into smaller, more poorly sorted fragments and densified via dynamic compaction when compared to less energetic, fragmental-type rock falls. These results suggest that accumulation of individual rock-fall boulders tends to steepen talus slopes, whereas large, energetic rock falls tend to flatten them. Detachment and impact signals were recorded by seismic and acoustic instruments and highlight the potential use of this type of instrumentation for generalized rock fall monitoring, while LiDAR and photography data were able to quantify the cliff geometry, rock fall volume, source and impact locations, and geomorphological changes to the cliff and talus.

Taphonomic bias in pollen and spore record: a review

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fisk, L.H.

The high dispersibility and ease of pollen and spore transport have led researchers to conclude erroneously that fossil pollen and spore floras are relatively complete and record unbiased representations of the regional vegetation extant at the time of sediment deposition. That such conclusions are unjustified is obvious when the authors remember that polynomorphs are merely organic sedimentary particles and undergo hydraulic sorting not unlike clastic sedimentary particles. Prior to deposition in the fossil record, pollen and spores can be hydraulically sorted by size, shape, and weight, subtly biasing relative frequencies in fossil assemblages. Sorting during transport results in palynofloras whosemore » composition is environmentally dependent. Therefore, depositional environment is an important consideration to make correct inferences on the source vegetation. Sediment particle size of original rock samples may contain important information on the probability of a taphonomically biased pollen and spore assemblage. In addition, a reasonable test of hydraulic sorting is the distribution of pollen grain sizes and shapes in each assemblage. Any assemblage containing a wide spectrum of grain sizes and shapes has obviously not undergone significant sorting. If unrecognized, taphonomic bias can lead to paleoecologic, paleoclimatic, and even biostratigraphic misinterpretations.« less

Eruptive style and construction of shallow marine mafic tuff cones in the Narakay Volcanic Complex (Proterozoic, Hornby Bay Group, Northwest Territories, Canada)

NASA Astrophysics Data System (ADS)

Ross, Gerald M.

1986-03-01

The Early Proterozoic (1663 Ma) Narakay Volcanic Complex, exposed in Great Bear Lake (Northwest Territories, Canada), is a bimodal suite of basalt and rhyolite erupted in a continental setting and consisting largely of pyroclastic rocks interlayered with shallow marine sedimentary rocks of the Hornby Bay Group. Mafic pyroclastic rocks consist of lapilli tuff, tuff, tuff breccia and agglomerate that represent the remnants of small subaerial tuff cones (0.5 to 2 km in diameter) that in most cases have subsided into the volcanic conduit. Stratification styles, sedimentary structures and grain morphologies in pyroclastic rocks reflect variations in the water:magma ratio during eruptions and have been used to help elucidate eruptive mechanisms and reconstruct volcanic edifices. Basaltic pyroclasts are commonly bounded by fracture surfaces and are morphologically similar to modern pyroclasts produced by thermal quench fragmentation or steam-blast disruption of magma. Most fragments have low vesicularity and scoria is only locally abundant which indicates that eruptive energy was supplied mostly by water—melt interaction rather than exsolution of magmatic gases. Cored bombs and lapilli, fusiform bombs, and pyroclasts similar in texture to those of Strombolian cinder and agglutinate spatter, are uncommon but are stratigraphically widespread and imply the occurrence of Strombolian eruptions, presumably when water access to the vent was impeded. Massive bedding is typical of the tuffs and, in addition to the poorly sorted ash-rich nature of the tuffs, implies deposition from water- and/or steam-rich hydrovolcanic eruption clouds and cypressoid jets by airfall and dense pyroclastic flows. Uncommon well-stratified and sorted ash and lapilli tuff record airfall and pyroclastic flow(?) deposition from eruption clouds rich in magmatic gases. Base surge deposits are uncommon and occur only in the subaerial portion of a sequence of tuffs inferred to record the progradation of a cone-margin surge platform into standing water. Few of the tuff cone deposits display a systematic vertical sequence of stratification styles, structures and grain morphologies. This indicates that either the eruptive style varied irregularly between hydrovolcanic and Strombolian and/or that pyroclasts of different origin were mixed during eruptions.

Reconstruction of a kimberlite eruption, using an integrated volcanological, geochemical and numerical approach: A case study of the Fox Kimberlite, NWT, Canada

NASA Astrophysics Data System (ADS)

Porritt, L. A.; Cas, R. A. F.

2009-01-01

An integrated approach involving volcanology, geochemistry and numerical modelling has enabled the reconstruction of the volcanic history of the Fox kimberlite pipe. The observed deposits within the vent include a basal massive, poorly sorted, matrix supported, lithic fragment rich, eruption column collapse lapilli tuff. Extensive vent widening during the climactic magmatic phase of the eruption led to overloading of the eruption column with cold dense country rock lithic fragments, dense juvenile pyroclasts and olivine crystals, triggering column collapse. > 40% dilution of the kimberlite by granodiorite country rock lithic fragments is observed both in the physical componentry of the rocks and in the geochemical signature, where enrichment in Al 2O 3 and Na 2O compared to average values for coherent kimberlite is seen. The wide, deep, open vent provided a trap for a significant proportion of the collapsing column material, preventing large scale run-away in the form of pyroclastic flow onto the ground surface, although minor flows probably also occurred. A massive to diffusely bedded, poorly sorted, matrix supported, accretionary-lapilli bearing, lithic fragment rich, lapilli tuff overlies the column collapse deposit providing evidence for a late phreatomagmatic eruption stage, caused by the explosive interaction of external water with residual magma. Correlation of pipe morphology and internal stratigraphy indicate that widening of the pipe occurred during this latter stage and a thick granodiorite cobble-boulder breccia was deposited. Ash- and accretionary lapilli-rich tephra, deposited on the crater rim during the late phreatomagmatic stage, was subsequently resedimented into the vent. Incompatible elements such as Nb are used as indicators of the proportion of the melt fraction, or kimberlite ash, retained or removed by eruptive processes. When compared to average coherent kimberlite the ash-rich deposits exhibit ~ 30% loss of fines whereas the column collapse deposit exhibits ~ 50% loss. This shows that despite the poorly sorted nature of the column collapse deposit significant elutriation has occurred during the eruption, indicating the existence of a high sustained eruption column. The deposits within Fox record a complex eruption sequence showing a transition from a probable violent sub-plinian style eruption, driven by instantaneous exsolution of magmatic volatiles, to a late phreatomagmatic eruption phase. Mass eruption rate and duration of the sub-plinian phase of the eruption have been determined based on the dimensions of milled country-rock boulders found within the intra-vent deposits. Calculations show a short lived eruption of one to eleven days for the sub-plinian magmatic phase, which is similar in duration to small volume basaltic eruptions. This is in general agreement with durations of kimberlite eruptions calculated using entirely different approaches and parameters, such as predictions of magma ascent rates in kimberlite dykes.

Mix of Particles in 'Uchben' Close-up

NASA Technical Reports Server (NTRS)

2004-01-01

[figure removed for brevity, see original site] Figure 1

Close-up examination of a freshly exposed area of a rock called 'Uchben' in the 'Columbia Hills' of Mars reveals an assortment of particle shapes and sizes in the rock's makeup. NASA's Mars Exploration Rover Spirit used its microscopic imager during the rover's 286th martian day (Oct. 22, 2004) to take the frames assembled into this view. The view covers a circular hole ground into a target spot called 'Koolik' on Uchben by the rover's rock abrasion tool. The circle is 4.5 centimeters (1.8 inches) in diameter. Particles in the rock vary in shape from angular to round, and range in size from about 0.5 millimeter (0.2 inch) to too small to be seen. This assortment suggests that the rock originated from particles that had not been transported much by wind or water, because such a transport process would likely have resulted in more sorting of the particles by size and shape.

Mix of Particles in "Uchben" Close-up

NASA Image and Video Library

2004-11-04

Close-up examination of a freshly exposed area of a rock called "Uchben" in the "Columbia Hills" of Mars reveals an assortment of particle shapes and sizes in the rock's makeup. NASA's Mars Exploration Rover Spirit used its microscopic imager during the rover's 286th martian day (Oct. 22, 2004) to take the frames assembled into this view. The view covers a circular hole ground into a target spot called "Koolik" on Uchben by the rover's rock abrasion tool. The circle is 4.5 centimeters (1.8 inches) in diameter. Particles in the rock vary in shape from angular to round, and range in size from about 0.5 millimeter (0.2 inch) to too small to be seen. This assortment suggests that the rock originated from particles that had not been transported much by wind or water, because such a transport process would likely have resulted in more sorting of the particles by size and shape. http://photojournal.jpl.nasa.gov/catalog/PIA07023

Fault rock mineralogy and fluid flow in the Coso Geothermal Field, CA

NASA Astrophysics Data System (ADS)

Davatzes, N. C.; Hickman, S. H.

2005-12-01

The minerals that comprise fault rock, their grain shapes, and packing geometry are important controls on fault zone properties such as permeability, frictional strength, and slip behavior. In this study we examine the role of mineralogy and deformation microstructures on fluid flow in a fault-hosted, fracture-dominated geothermal system contained in granitic rocks in the Coso Geothermal Field, CA. Initial examination of the mineralogy and microstructure of fault rock obtained from core and surface outcrops reveals three fault rock types. (1) Fault rock consisting of kaolinite and amorphous silica that contains large connected pores, dilatant brittle fractures, and dissolution textures. (2) Fault rock consisting of foliated layers of chlorite and illite-smectite separated by slip surfaces. (3) Fault rock consisting of poorly sorted angular grains, characterized by large variations in grain packing (pore size), and crack-seal textures. These different fault rocks are respectively associated with a high permeability upper boiling zone for the geothermal system, a conductively heated "caprock" at moderate to shallow depth associated with low permeability, and a deeper convectively heated region associated with enhanced permeability. Outcrop and hand-sample scale mapping, XRD analysis, and SEM secondary electron images of fault gouge and slip surfaces at different stages of development (estimated shear strain) are used to investigate the processes responsible for the development and physical properties of these distinct fault rocks. In each type of fault rock, mineral dissolution and re-precipitation in conjunction with the amount and geometry of porosity changes induced by dilation or compaction are the key controls on fault rock development. In addition, at the contacts between slip surfaces, abrasion and resulting comminution appear to influence grain size, sorting, and packing. Macroscopically, we expect the frictional strength of these characteristic fault rocks to differ because the processes that accommodate deformation depend strongly on mineralogy. Frictional strength of quartz-dominated fault rocks in the near surface and in the reservoir should be greater (~0.6) than that in the clay-dominated cap rock (~0.2-0.4). Similarly, permeability should be much lower in foliated clay-rich fault rocks than in quartz-rich fault rocks as evidenced by larger, more connected pores imaged in quartz-rich gouge. Mineral stability is a function of loading, strain rate, temperature, and fluid flow conditions. Which minerals form, and the rates at which they grow is also a key element in determining variations in the magnitude and anisotropy of fault zone properties at Coso. Consequently, we suggest that the development of fault-zone properties depends on the feedback between deformation, resulting changes in permeability, and large-scale fluid flow and the leading to dissolution/precipitation of minerals in the fault rock and adjacent host rock. The implication for Coso is that chemical alteration of otherwise low-porosity crystalline rocks appears to determine the distribution and temporal evolution of permeability in the actively deforming fracture network at small to moderate scales as well as along major, reservoir-penetrating fault zones.

Geoscience for Preschoolers

ERIC Educational Resources Information Center

Danisa, David; Gentile, Jason; McNamara, Kate; Pinney, Monica; Ross, Sarah; Rule, Audrey C.

2006-01-01

In this article, a group of five preservice teachers and a teacher arranged to try a few activities at their campus day care. Together, they created and tested a series of learning centers involving rocks and minerals. Since minerals occur in such a wonderful variety of colors, they formed the basis for an engaging lesson on color sorting. This…

Rapid radiation, ancient incomplete lineage sorting and ancient hybridization in the endemic Lake Tanganyika cichlid tribe Tropheini.

PubMed

Koblmüller, Stephan; Egger, Bernd; Sturmbauer, Christian; Sefc, Kristina M

2010-04-01

The evolutionary history of the endemic Lake Tanganyika cichlid tribe Tropheini, the sister group of the species flocks of Lake Malawi and the Lake Victoria region, was reconstructed from 2009 bp DNA sequence of two mitochondrial genes (ND2 and control region) and from 1293 AFLP markers. A period of rapid cladogenesis at the onset of the diversification of the Tropheini produced a multitude of specialized, predominantly rock-dwelling aufwuchs-feeders that now dominate in Lake Tanganyika's shallow habitat. Nested within the stenotopic rock-dwellers is a monophyletic group of species, which also utilize more sediment-rich habitat. Most of the extant species date back to at least 0.7 million years ago. Several instances of disagreement between AFLP and mtDNA tree topology are attributed to ancient incomplete lineage sorting, introgression and hybridization. A large degree of correspondence between AFLP clustering and trophic types indicated fewer cases of parallel evolution of trophic ecomorphology than previously inferred from mitochondrial data. (c) 2009 Elsevier Inc. All rights reserved.

Ground-water resources in Mendocino County, California

USGS Publications Warehouse

Farrar, C.D.

1986-01-01

Mendocino County includes about 3,500 sq mi of coastal northern California. Groundwater is the main source for municipal and individual domestic water systems and contributes significantly to irrigation. Consolidated rocks of the Franciscan Complex are exposed over most of the county. The consolidated rocks are commonly dry and generally supply < 5 gal/min of water to wells. Unconsolidated fill in the inland valleys consists of gravel, sand, silt, and clay. Low permeability in the fill caused by fine grain size and poor sorting limits well yields to less than 50 gal/min in most areas; where the fill is better sorted, yields of 1,000 gal/min can be obtained. Storage capacity estimates for the three largest basins are Ukiah Valley, 90,000 acre-ft; Little lake Valley, 35,000 acre-ft; and Laytonville Valley, 14,000 acre-ft. Abundant rainfall (35 to 56 in/yr) generally recharges these basins to capacity. Seasonal water level fluctuations since the 1950 's have been nearly constant, except during the 1976-77 drought. Chemical quality of water in basement rocks and valley fill is generally acceptable for most uses. Some areas along fault zones yield water with high boron concentrations ( <2 mg/L). Sodium chloride water with dissolved solids concentrations exceeding 1,000 mg/L is found in deeper parts of Little Lake Valley. (Author 's abstract)

Contrasted glass-whole rock compositions and phenocryst re-distribution, IPOD Sites 417 and 418

NASA Astrophysics Data System (ADS)

Staudigel, H.; Bryan, W. B.

1982-01-01

Major element composition ranges of closely associated basalt glass-whole rock pairs from individual small cooling units approach the total known range of basalt glass and whole rock compositions at IPOD sites 417 and 418. The whole rock samples fall into two groups: one is depleted in MgO and distinctly enriched in plagioclase but has lost some olivine and/or pyroxene relative to its corresponding glass; and the other is enriched in MgO and in phenocrysts of olivine and pyroxene as well as plagioclase compared to its corresponding glass. By analogy with observed phenocryst distributions in lava pillows, tubes, and dikes, and with some theoretical studies, we infer that bulk rock compositions are strongly affected by phenocryst redistribution due to gravity settling, flotation, and dynamic sorting after eruption, although specific models are not well constrained by the one-dimensional geometry of drill core. Compositional trends or groupings in whole rock data resulting from such late-stage processes should not be confused with more fundamental compositional effects produced in deep chambers or during partial melting.

Unboxing Space Rocks

ScienceCinema

Bruck Syal, Megan

2018-01-16

The box was inconspicuous, but Lawrence Livermore National Laboratory (LLNL) postdoctoral researcher Megan Bruck Syal immediately knew its contents: two meteorites around the size of walnuts. They formed about 4.6 billion years ago and survived a history of violent collisions in the asteroid belt before being bumped into a near-Earth-object orbit by gravitational interactions with the planets. After finally raining down on Earth, these rocks were scavenged in Antarctica by researchers, sorted and classified at NASA Johnson Space Center, then mailed first-class to Bruck Syal. Now that these space rocks are in Bruck Syal’s hands, they are mere months away from fulfilling their destiny. They are to be vaporized by a high-powered laser, and the data they yield on asteroid deflection could one day save the planet.

Unboxing Space Rocks

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bruck Syal, Megan

The box was inconspicuous, but Lawrence Livermore National Laboratory (LLNL) postdoctoral researcher Megan Bruck Syal immediately knew its contents: two meteorites around the size of walnuts. They formed about 4.6 billion years ago and survived a history of violent collisions in the asteroid belt before being bumped into a near-Earth-object orbit by gravitational interactions with the planets. After finally raining down on Earth, these rocks were scavenged in Antarctica by researchers, sorted and classified at NASA Johnson Space Center, then mailed first-class to Bruck Syal. Now that these space rocks are in Bruck Syal’s hands, they are mere months awaymore » from fulfilling their destiny. They are to be vaporized by a high-powered laser, and the data they yield on asteroid deflection could one day save the planet.« less

Intensive Survey at 11-Jd-126, Jo Daviess County, Illinois. Volume 2. Data Sheets.

DTIC Science & Technology

1983-07-01

wes-t- of_(Thtum a CONTENTS: Ceramics _____ Lithics- 4-pieces (1 shattgr, _3_ lakesfi q) Rough Rock-________ __ Bone 1 bone fragment __ Charcoal...Historic I historic ceramic iOther__ ___________ Washed fly M.0. /M. T.,/J. C. Sorted ByJ. C./M.T./M. O./P. Labeled By- M.O. Date 10/6/82 Date___ 10/6/82...5it.cU 6 I: I 1. . (3l 1: 1 t- y 1 P L _ ) .11 0/612 t" ) 1 L*Tot N:tr 29-it--~~ ~- o’. l.-).- I)"se ’ 10 ’r , c1 Sorte Byrj * Da e2 3 2 Vst 0 821f Co

Geochemical characterization of the siliciclastic rocks of Chitravati Group, Cuddapah Supergroup: Implications for provenance and depositional environment

NASA Astrophysics Data System (ADS)

Somasekhar, V.; Ramanaiah, S.; Sarma, D. Srinivasa

2018-06-01

Petrological and geochemical studies have been carried out on Pulivendla and Gandikota Quartzite from Chitravati Group of Cuddapah Supergroup to decipher the provenance and depositional environment. Both the units are texturally mature with sub-rounded to well-rounded and moderately to well-sorted grains. Majority of the framework grains are quartz, in the form of monocrystalline quartz, followed by feldspars (K-feldspar and plagioclase), mica, rock fragments, heavy minerals, with minor proportion of the matrix and cement. Based on major element geochemical classification diagram, Pulivendla Quartzite is considered as quartz-arenite and arkose to sub-arkose, whereas Gandikota Quartzite falls in the field of lith-arenite and arkose to sub-arkose. Weathering indices like CIA, PIA, CIW, ICV, Th/U ratio and A-CN-K ternary diagram suggest moderate to intense chemical weathering of the source rocks of these quartzites. Whole rock geochemistry of quartzites indicate that they are primarily from the first-cycle sediments, along with some minor recycled components. Also their sources were mostly intermediate-felsic igneous rocks of Archean age. The tectonic discrimination plots, Th-Sc-Zr/10 of both these formations reflect active to passive continental margin setting. Chondrite-normalized rare earth element (REE) patterns, and various trace element ratios like Cr/Th, Th/Co, La/Sc and Th/Cr indicate dominantly felsic source with minor contribution from mafic source. Th/Sc ratios of Pulivendla and Gandikota Quartzite are in close proximity with average values of 2.83, 3.45 respectively, which is higher than AUCC (Th/Sc=0.97), demonstrating that the contributions from more alkali source rocks than those that contributed to AUCC.

A Volcanic Environment for Bedrock Diagenesis at Meridiani Planum, Mars

NASA Astrophysics Data System (ADS)

Hynek, B. M.; McCollom, T. M.

2005-12-01

Exposed bedrocks at Meridiani Planum on Mars display chemical and mineralogical evidence suggesting interaction with liquid water. Based on the observed bedding morphology, crystal vugs, varying Br:Cl ratios, as well as high abundances of hematite and sulfate minerals, the rocks have been interpreted by the Mars Exploration Rover (MER) team as sedimentary/evaporite deposits. However, the composition of the Meridiani bedrocks indicates that the formation model advocated by the MER team is not plausible. If the sulfates were attributable to precipitation of salts from an evaporating brine the rocks would be enriched in a balancing cation (e.g., Ca, Mg, or Fe) but this is not observed. Ratios of cations including Fe, Mg, Ca, and Na to (Si + Al) in the rocks are nearly identical to the basaltic martian meteorite Shergotty, and also very similar to unweathered basaltic rocks at Meridiani and Gusev Crater. The compositional data strongly suggest that the Meridiani rocks represent typical martian basalt with a sulfur component added. Here, we propose an alternative model for diagenesis of Meridiani bedrock that involves deposition of volcanic ash followed by reaction with condensed SO2- and H2O-bearing vapors in a solfatara-like setting. We suggest that volcanic deposition may account for the textures observed in Meridiani rocks since morphologic bedding features including sorted grains, planar bedding, low-angle cross-stratification, festoon bedding, and ripple lamination are common in base surge deposits of ash on Earth. The lath-shaped vugs may be the remains of ferrous sulfates (or mixed Fe-Mg-Ca sulfates) formed in the early stages of alteration that became unstable during oxidation. Widely varying Br:Cl ratios are also common in solfatara environments on Earth. In this scenario, most of the alteration of the rocks likely occurred at high temperatures (~100° C or higher), possibly soon after the volcaniclastic deposits were emplaced and still retained their original heat. Extended periods of time, a standing body of water, and clement conditions would not have been required for completion of the hypothesized diagenetic sequence.

A note on coarse-grained gravity-flow deposits within proterozoic lacustrine sedimentary rocks, Transvaal sequence, South Africa

NASA Astrophysics Data System (ADS)

Eriksson, P. G.

A widely developed, thin, coarse-matrix conglomerate occurs within early Proterozoic lacustrine mudrocks in the Transvaal Sequence, South Africa. The poorly sorted tabular chert clasts, alternation of a planar clast fabric with disorientated zones, plus normal and inverse grading in the former rock type suggest deposition by density-modified grain-flow and high density turbidity currents. The lower fan-delta slope palæenvironment inferred for the conglomerate is consistent with the lacustrine interpretation for the enclosing mudrock facies. This intracratonic setting contrasts with the marine environment generally associated with density-modified grain-flow deposits.

Chromosome evolution in kangaroos (Marsupialia: Macropodidae): cross species chromosome painting between the tammar wallaby and rock wallaby spp. with the 2n = 22 ancestral macropodid karyotype.

PubMed

O'Neill, R J; Eldridge, M D; Toder, R; Ferguson-Smith, M A; O'Brien, P C; Graves, J A

1999-06-01

Marsupial mammals show extraordinary karyotype stability, with 2n = 14 considered ancestral. However, macropodid marsupials (kangaroos and wallabies) exhibit a considerable variety of karyotypes, with a hypothesised ancestral karyotype of 2n = 22. Speciation and karyotypic diversity in rock wallabies (Petrogale) is exceptional. We used cross species chromosome painting to examine the chromosome evolution between the tammar wallaby (2n = 16) and three 2n = 22 rock wallaby species groups with the putative ancestral karyotype. Hybridization of chromosome paints prepared from flow sorted chromosomes of the tammar wallaby to Petrogale spp., showed that this ancestral karyotype is largely conserved among 2n = 22 rock wallaby species, and confirmed the identity of ancestral chromosomes which fused to produce the bi-armed chromosomes of the 2n = 16 tammar wallaby. These results illustrate the fission-fusion process of karyotype evolution characteristic of the kangaroo group.

Recent results from the Microscopic Imagers on the Mars Exploration Rovers

NASA Astrophysics Data System (ADS)

Herkenhoff, K. E.; Ashley, J. W.; Cabrol, N. A.

2009-12-01

The Athena science payload on the Mars Exploration Rovers (MER) includes the Microscopic Imager (MI), designed to simulate a geologist’s hand lens. The fixed-focus MI is mounted on the instrument arm and can resolve objects 0.1 mm in size or larger. Spirit MI observations of the rocks on “Home Plate” continue to be consistent with a volcaniclastic origin. A total of 124 individual soil samples were analyzed using MI images acquired between landing and Sol 1980, including 28 bedforms, 35 composite soils, 49 unstructured soils, and 6 trenches including natural vertical exposures and those dug by Spirit’s wheels. Six outcrops and rocks were also analyzed as plausible source areas for the spherules and other particles observed in the soil around Home Plate, or when associated with large patches of soils. The rocks on Home Plate were covered by enough dust that RAT brushing was required to allow textures to be seen by the MI, such as the dark, moderately sorted and rounded grains (lapilli?) of the rock “Pecan Pie.” The MI also monitored the MER magnets and solar panels at the 2008 winter haven on the north side of Home Plate. After solar power was sufficient to allow Spirit to drive again, the MI was used to examine the silica-rich rock “Stapledon” just north of Home Plate. The texture of Stapledon appears similar to that seen in the silica-rich rocks on the east side of Home Plate, suggestive of secondary mineralization through precipitation from hydrothermal fluids. While plans for extracting Spirit from the sands of “Troy” are being made, the MI has been extensively used to examine the rocks and soils accessible to the instrument arm. These data show that moderately sorted, salty aggregate soils at depth are overlain by a thin crust near the present surface. These observations, along with MI images showing Spirit’s underbelly, are being used to inform extraction testing in the MER testbed at JPL. While the MI was not designed to take images of objects under the rover, the out-of-focus data still show what appears to be a rock touching the belly. Opportunity MI observations in Victoria crater show that hematite concretions are generally smaller and less spherical than those observed farther north on Meridiani Planum, despite similarities in the chemical composition of the rocks. This change in the concretions may be due to lateral differences in depositional environment or diagenesis, or may reflect vertical stratigraphic variations as Opportunity traversed up section. As Opportunity traverses south from Victoria crater, the MI has observed multiple outcrops and cobbles. Some of the cobbles, such as “Santorini” and “Kasos,” show textures that are consistent with the interpretation, based on chemical data, that they are meteorites. More recently, Opportunity studied the boulder “Block Island,” an iron-nickel meteorite. MI images of “Block Island” show triangular features that are interpreted as Widmanstätten patterns, commonly observed in this type of meteorite. The MI has also imaged skeleton-like metal protrusions on “Block Island” that appear to be the result of preferential weathering of interstitial material.

Reconnaissance geology of the Wadi Wassat quadrangle, Kingdom of Saudi Arabia

USGS Publications Warehouse

Overstreet, William C.; Rossman, D.L.

1970-01-01

The Wadi Wassat quadrangle covers an area of 2926 sq km in the southwestern part of the Kingdom of Saudi Arabia. The west half of the quadrangle is underlain by crystalline rocks of the Arabian Shield, but in the eastern half of the quadrangle the Precambrian rocks are covered by Permian or older sandstone which is succeeded farther east by aeolian sands of Ar Rub' al Khali. The Shield consists of a sequence of unmetamorphosed to metamorphosed interlayered volcanic and sedimentary rocks intruded by igneous rocks ranging in composition from gabbro to syenite and in age from Precambrian to Cambrian(?). The volcanic rocks range in composition from andesite to rhyolite and in texture from agglomerate to thick, massive flows and lithic tuff. They are interlayered with conglomerate, fine-grained graywacke sandstone, calcareous graywacke, siltstone, tuffaceous laminated shale, pyritiferous sediment, carbonaceous shale, limestone, and dolomite. Most clastic debris is derived from andesite. In places the rocks are polymetamorphosed; elsewhere they are unmetamorphosed. The rocks on which this volcano-sedimentary eugeosynclinal sequence was deposited are not exposed in the area of the quadrangle. Reglonal dynamothermal metamorphism was .the dominant process affecting the volcanic-sedimentary rocks in the western part of the quadrangle. In the eastern part of the Precambrian area the chief metamorphic effect results from contact action along the walls of intrusive plutons. The oldest igneous rock to intrude the volcanic-sedimentary sequence, after the dikes and sills of the sequence itself, is granite gneiss and gneissic granodiorite. The gneiss is sparsely present in the quadrangle, but northwest of the quadrangle it forms an immense batholith which is one of the major geologic features of southwestern Arabia. However, the most common intrusive rocks of the quadrangle are a magnetic differentiation sequence that ranges in composition from gabbro and diorite to granite, rhyolite, and syenite. The siliceous members of the differentiation sequence commonly contain aluminous pyroxene or amphibole, and to the sequence the name peralkalic magma series has been given. Plutonic rocks of the series are widely intruded by hypabyssal rocks of the series. In most places, the older hypabyssal rocks tend to form interior dikes in the plutonic rocks, and the younger hypabyssal rocks commonly form the exterior dike swarms outside the plutonic rocks of the magma series. Many exterior dike swarms are concentrated in roof pendants of volcano-sedimentary rocks over the plutonic members of the magma series. Isotopic ages of rocks in the peralkalic magma series range from 598 +/-24 m.y. to 509 +/-15 m.y. by K/Ar and Rb/Sr methods. A profound angular unconformity exists between the Precambrian and Cambrian(?) crystalline rocks and the Permian or older sandstone which laps onto the Shield from the east and south. This sandstone, is reddish-brown, yellow, tan, and white called Wajid Sandstone, crossbedded sandstone with ferruginous cement and concretions in some layers. Locally, the rocks underlying the Wajid Sandstone are deeply weathered. Poorly sorted alluvial sand and gravel mantle the wadi floors. In the northeastern and southwestern parts of the quadrangle well-sorted aeolian sand is common. The volcanic and sedimentary rocks of the quadrangle are part of the east limb of an immense synclinorium(?) that closes south-westward around a batholitic core of gneissic granite and granodiorite. These layered rocks were isoclinally folded along northerly and north-northeasterly trending axes prior to the intrusion of the peralkalic magma series. During intrusion, the layered rocks were again folded as they were pushed aside, and major old regional northerly faults were reactivated with persistent left-lateral displacement. Reconnaissance geochemical sampling disclosed several notable groupings of threshold and anomalous elements with spe

Carbon Dioxide Sealing Capacity: Textural or Compositional Controls?

DOE Office of Scientific and Technical Information (OSTI.GOV)

Cranganu, Constantin; Soleymani, Hamidreza; Sadiqua, Soleymani

2013-11-30

This research project is aiming to assess the carbon dioxide sealing capacity of most common seal-rocks, such as shales and non-fractured limestones, by analyzing the role of textural and compositional parameters of those rocks. We hypothesize that sealing capacity is controlled by textural and/or compositional pa-rameters of caprocks. In this research, we seek to evaluate the importance of textural and compositional parameters affecting the sealing capacity of caprocks. The conceptu-al framework involves two testable end-member hypotheses concerning the sealing ca-pacity of carbon dioxide reservoir caprocks. Better understanding of the elements controlling sealing quality will advance our knowledge regarding the sealingmore » capacity of shales and carbonates. Due to relatively low permeability, shale and non-fractured carbonate units are considered relatively imper-meable formations which can retard reservoir fluid flow by forming high capillary pres-sure. Similarly, these unites can constitute reliable seals for carbon dioxide capture and sequestration purposes. This project is a part of the comprehensive project with the final aim of studying the caprock sealing properties and the relationship between microscopic and macroscopic characteristics of seal rocks in depleted gas fields of Oklahoma Pan-handle. Through this study we examined various seal rock characteristics to infer about their respective effects on sealing capacity in special case of replacing reservoir fluid with super critical carbon dioxide (scCO{sub 2}). To assess the effect of textural and compositional properties on scCO{sub 2} maximum reten-tion column height we collected 30 representative core samples in caprock formations in three counties (Cimarron, Texas, Beaver) in Oklahoma Panhandle. Core samples were collected from various seal formations (e.g., Cherokee, Keys, Morrowan) at different depths. We studied the compositional and textural properties of the core samples using several techniques. Mercury Injection Porosimetry (MIP), Scanning Electron Microsco-py SEM, and Sedigraph measurements are used to assess the pore-throat-size distribu-tion, sorting, texture, and grain size of the samples. Also, displacement pressure at 10% mercury saturation (Pd) and graphically derived threshold pressure (Pc) were deter-mined by MIP technique. SEM images were used for qualitative study of the minerals and pores texture of the core samples. Moreover, EDS (Energy Dispersive X-Ray Spec-trometer), BET specific surface area, and Total Organic Carbon (TOC) measurements were performed to study various parameters and their possible effects on sealing capaci-ty of the samples. We found that shales have the relatively higher average sealing threshold pressure (Pc) than carbonate and sandstone samples. Based on these observations, shale formations could be considered as a promising caprock in terms of retarding scCO{sub 2} flow and leak-age into above formations. We hypothesized that certain characteristics of shales (e.g., 3 fine pore size, pore size distribution, high specific surface area, and strong physical chemical interaction between wetting phase and mineral surface) make them an effi-cient caprock for sealing super critical CO{sub 2}. We found that the displacement pressure at 10% mercury saturation could not be the ultimate representative of the sealing capacity of the rock sample. On the other hand, we believe that graphical method, introduced by Cranganu (2004) is a better indicator of the true sealing capacity. Based on statistical analysis of our samples from Oklahoma Panhandle we assessed the effects of each group of properties (textural and compositional) on maximum supercriti-cal CO{sub 2} height that can be hold by the caprock. We conclude that there is a relatively strong positive relationship (+.40 to +.69) between supercritical CO{sub 2} column height based on Pc and hard/ soft mineral content index (ratio of minerals with Mohs hardness more than 5 over minerals with Mohs hardness less than 5) in both shales and limestone samples. Average median pore radius and porosity display a strong negative correlation with supercritical CO{sub 2} retention column height. Also, increasing bulk density is positive-ly correlated with the supercritical CO{sub 2} retention column height. One of the most im-portant factors affecting sealing capacity and consequently the height of supercritical CO{sub 2} column is sorting of the pore throats. We observed a strong positive correlation be-tween pore throat sorting and height of CO{sub 2} retention column, especially in shales. This correlation could not be observed in limestone samples. It suggests that the pore throat sorting is more controlling the sealing capacity in shales and shales with well sorted pore throats are the most reliable lithology as seal. We observed that Brunauer–Emmett–Teller (BET) surface area shows a very strong correlation with CO{sub 2} retention column height in limestone samples while BET surface area did not display significant correlation in shales. Pore structure based on SEM mi-crographs exhibits strong correlation with CO{sub 2} retention column height in limestones. Both intercrystalline and vuggy structures have negative correlations while intergranu-lar texture has positive correlation in limestone with respect to CO{sub 2} retention column height. Textural effects observed on SEM micrographs did not show statistically signifi-cant correlation with supercritical CO{sub 2} retention column height in shale samples. Finally, we showed that increasing hard/soft mineral index is strongly correlated with the displacement pressure in limestone samples. Vuggy texture displays a relatively strong and negative correlation with displacement pressure values at 10% mercury satu-ration in shale samples.« less

Soil-like deposits observed by Sojourner, the Pathfinder rover

USGS Publications Warehouse

Moore, Henry J.; Bickler, Donald B.; Crisp, Joy A.; Eisen, Howard J.; Gensler, Jeffrey A.; Haldemann, Albert F.C.; Matijevic, Jacob R.; Reid, Lisa K.; Pavlics, Ferenc

1999-01-01

Most of the soil-like materials at the Pathfinder landing site behave like moderately dense soils on Earth with friction angles near 34°-39° and are called cloddy deposits. Cloddy deposits appear to be poorly sorted with dust-sized to granule-sized mineral or rock grains; they may contain pebbles, small rock fragments, and clods. Thin deposits of porous, compressible drifts with friction angles near 26°-28° are also present. Drifts are fine grained. Cohesions of both types of deposits are small. There may be indurated soil-like deposits and/or coated or crusted rocks. Cloddy deposits may be fluvial sediments of the Ares-Tiu floods, but other origins, such as ejecta from nearby impact craters, should be considered. Drifts are probably dusts that settled from the Martian atmosphere. Remote-sensing signatures of the deposits inferred from rover observations are consistent with those observed from orbit and Earth.

Giant convecting mud balls of the early solar system

PubMed Central

Bland, Philip A.; Travis, Bryan J.

2017-01-01

Carbonaceous asteroids may have been the precursors to the terrestrial planets, yet despite their importance, numerous attempts to model their early solar system geological history have not converged on a solution. The assumption has been that hydrothermal alteration was occurring in rocky asteroids with material properties similar to meteorites. However, these bodies would have accreted as a high-porosity aggregate of igneous clasts (chondrules) and fine-grained primordial dust, with ice filling much of the pore space. Short-lived radionuclides melted the ice, and aqueous alteration of anhydrous minerals followed. However, at the moment when the ice melted, no geological process had acted to lithify this material. It would have been a mud, rather than a rock. We tested the effect of removing the assumption of lithification. We find that if the body accretes unsorted chondrules, then large-scale mud convection is capable of producing a size-sorted chondrule population (if the body accretes an aerodynamically sorted chondrule population, then no further sorting occurs). Mud convection both moderates internal temperature and reduces variation in temperature throughout the object. As the system is thoroughly mixed, soluble elements are not fractionated, preserving primitive chemistry. Isotopic and redox heterogeneity in secondary phases over short length scales is expected, as individual particles experience a range of temperature and water-rock histories until they are brought together in their final configuration at the end of convection. These results are consistent with observations from aqueously altered meteorites (CI and CM chondrites) and spectra of primitive asteroids. The “mudball” model appears to be a general solution: Bodies spanning a ×1000 mass range show similar behavior. PMID:28740862

To sort or not to sort: the impact of spike-sorting on neural decoding performance.

PubMed

Todorova, Sonia; Sadtler, Patrick; Batista, Aaron; Chase, Steven; Ventura, Valérie

2014-10-01

Brain-computer interfaces (BCIs) are a promising technology for restoring motor ability to paralyzed patients. Spiking-based BCIs have successfully been used in clinical trials to control multi-degree-of-freedom robotic devices. Current implementations of these devices require a lengthy spike-sorting step, which is an obstacle to moving this technology from the lab to the clinic. A viable alternative is to avoid spike-sorting, treating all threshold crossings of the voltage waveform on an electrode as coming from one putative neuron. It is not known, however, how much decoding information might be lost by ignoring spike identity. We present a full analysis of the effects of spike-sorting schemes on decoding performance. Specifically, we compare how well two common decoders, the optimal linear estimator and the Kalman filter, reconstruct the arm movements of non-human primates performing reaching tasks, when receiving input from various sorting schemes. The schemes we tested included: using threshold crossings without spike-sorting; expert-sorting discarding the noise; expert-sorting, including the noise as if it were another neuron; and automatic spike-sorting using waveform features. We also decoded from a joint statistical model for the waveforms and tuning curves, which does not involve an explicit spike-sorting step. Discarding the threshold crossings that cannot be assigned to neurons degrades decoding: no spikes should be discarded. Decoding based on spike-sorted units outperforms decoding based on electrodes voltage crossings: spike-sorting is useful. The four waveform based spike-sorting methods tested here yield similar decoding efficiencies: a fast and simple method is competitive. Decoding using the joint waveform and tuning model shows promise but is not consistently superior. Our results indicate that simple automated spike-sorting performs as well as the more computationally or manually intensive methods used here. Even basic spike-sorting adds value to the low-threshold waveform-crossing methods often employed in BCI decoding.

To sort or not to sort: the impact of spike-sorting on neural decoding performance

NASA Astrophysics Data System (ADS)

Todorova, Sonia; Sadtler, Patrick; Batista, Aaron; Chase, Steven; Ventura, Valérie

2014-10-01

Objective. Brain-computer interfaces (BCIs) are a promising technology for restoring motor ability to paralyzed patients. Spiking-based BCIs have successfully been used in clinical trials to control multi-degree-of-freedom robotic devices. Current implementations of these devices require a lengthy spike-sorting step, which is an obstacle to moving this technology from the lab to the clinic. A viable alternative is to avoid spike-sorting, treating all threshold crossings of the voltage waveform on an electrode as coming from one putative neuron. It is not known, however, how much decoding information might be lost by ignoring spike identity. Approach. We present a full analysis of the effects of spike-sorting schemes on decoding performance. Specifically, we compare how well two common decoders, the optimal linear estimator and the Kalman filter, reconstruct the arm movements of non-human primates performing reaching tasks, when receiving input from various sorting schemes. The schemes we tested included: using threshold crossings without spike-sorting; expert-sorting discarding the noise; expert-sorting, including the noise as if it were another neuron; and automatic spike-sorting using waveform features. We also decoded from a joint statistical model for the waveforms and tuning curves, which does not involve an explicit spike-sorting step. Main results. Discarding the threshold crossings that cannot be assigned to neurons degrades decoding: no spikes should be discarded. Decoding based on spike-sorted units outperforms decoding based on electrodes voltage crossings: spike-sorting is useful. The four waveform based spike-sorting methods tested here yield similar decoding efficiencies: a fast and simple method is competitive. Decoding using the joint waveform and tuning model shows promise but is not consistently superior. Significance. Our results indicate that simple automated spike-sorting performs as well as the more computationally or manually intensive methods used here. Even basic spike-sorting adds value to the low-threshold waveform-crossing methods often employed in BCI decoding.

The potassic sedimentary rocks in Gale Crater, Mars, as seen by ChemCam Onboard Curiosity

USGS Publications Warehouse

Le Deit, Laetitia; Mangold, Nicolas; Forni, Olivier; Cousin, Agnes; Lasue, Jeremie; Schröder, Susanne; Wiens, Roger C.; Sumner, Dawn Y.; Fabre, Cecile; Stack, Katherine M.; Anderson, Ryan; Blaney, Diana L.; Clegg, Samuel M.; Dromart, Gilles; Fisk, Martin; Gasnault, Olivier; Grotzinger, John P.; Gupta, Sanjeev; Lanza, Nina; Le Mouélic, Stephane; Maurice, Sylvestre; McLennan, Scott M.; Meslin, Pierre-Yves; Nachon, Marion; Newsom, Horton E.; Payre, Valerie; Rapin, William; Rice, Melissa; Sautter, Violaine; Treiman, Alan H.

2016-01-01

The Mars Science Laboratory rover Curiosity encountered potassium-rich clastic sedimentary rocks at two sites in Gale Crater, the waypoints Cooperstown and Kimberley. These rocks include several distinct meters thick sedimentary outcrops ranging from fine sandstone to conglomerate, interpreted to record an ancient fluvial or fluvio-deltaic depositional system. From ChemCam Laser-Induced Breakdown Spectroscopy (LIBS) chemical analyses, this suite of sedimentary rocks has an overall mean K2O abundance that is more than 5 times higher than that of the average Martian crust. The combined analysis of ChemCam data with stratigraphic and geographic locations reveals that the mean K2O abundance increases upward through the stratigraphic section. Chemical analyses across each unit can be represented as mixtures of several distinct chemical components, i.e., mineral phases, including K-bearing minerals, mafic silicates, Fe-oxides, and Fe-hydroxide/oxyhydroxides. Possible K-bearing minerals include alkali feldspar (including anorthoclase and sanidine) and K-bearing phyllosilicate such as illite. Mixtures of different source rocks, including a potassium-rich rock located on the rim and walls of Gale Crater, are the likely origin of observed chemical variations within each unit. Physical sorting may have also played a role in the enrichment in K in the Kimberley formation. The occurrence of these potassic sedimentary rocks provides additional evidence for the chemical diversity of the crust exposed at Gale Crater.

Installation Restoration Program. Preliminary Assessment: Connecticut Air National Guard, 103rd Tactical Fighter Group (TFG), Bradley International Airport, Windsor Locks, Connecticut and 103rd Tactical Control Squadron (TCS), Orange/West Haven, Connectiut

DTIC Science & Technology

1988-11-01

poorly sorted, not I E compacted, very plastic . Contains siliceous N diatoms and spores. Organic content high (17.2 T percent of sample lost during...physical character of a rock (e.g., particle size, color, mineral content, primary strutures, thickness, weathering caracteristics , and other physical

The potassic sedimentary rocks in Gale Crater, Mars, as seen by ChemCam on board Curiosity: Potassic Sedimentary Rocks, Gale Crater

DOE PAGES

Le Deit, L.; Mangold, N.; Forni, O.; ...

2016-05-13

The Mars Science Laboratory rover Curiosity encountered potassium-rich clastic sedimentary rocks at two sites in Gale Crater, the waypoints Cooperstown and Kimberley. These rocks include several distinct meters thick sedimentary outcrops ranging from fine sandstone to conglomerate, interpreted to record an ancient fluvial or fluvio-deltaic depositional system. Furthermore, from ChemCam Laser-Induced Breakdown Spectroscopy (LIBS) chemical analyses, this suite of sedimentary rocks has an overall mean K 2O abundance that is more than 5 times higher than that of the average Martian crust. The combined analysis of ChemCam data with stratigraphic and geographic locations then reveals that the mean K 2Omore » abundance increases upward through the stratigraphic section. Chemical analyses across each unit can be represented as mixtures of several distinct chemical components, i.e., mineral phases, including K-bearing minerals, mafic silicates, Fe-oxides, and Fe-hydroxide/oxyhydroxides. Possible K-bearing minerals include alkali feldspar (including anorthoclase and sanidine) and K-bearing phyllosilicate such as illite. Mixtures of different source rocks, including a potassium-rich rock located on the rim and walls of Gale Crater, are the likely origin of observed chemical variations within each unit. Physical sorting may have also played a role in the enrichment in K in the Kimberley formation. The occurrence of these potassic sedimentary rocks provides additional evidence for the chemical diversity of the crust exposed at Gale Crater.« less

The potassic sedimentary rocks in Gale Crater, Mars, as seen by ChemCam on board Curiosity: Potassic Sedimentary Rocks, Gale Crater

DOE Office of Scientific and Technical Information (OSTI.GOV)

Le Deit, L.; Mangold, N.; Forni, O.

The Mars Science Laboratory rover Curiosity encountered potassium-rich clastic sedimentary rocks at two sites in Gale Crater, the waypoints Cooperstown and Kimberley. These rocks include several distinct meters thick sedimentary outcrops ranging from fine sandstone to conglomerate, interpreted to record an ancient fluvial or fluvio-deltaic depositional system. Furthermore, from ChemCam Laser-Induced Breakdown Spectroscopy (LIBS) chemical analyses, this suite of sedimentary rocks has an overall mean K 2O abundance that is more than 5 times higher than that of the average Martian crust. The combined analysis of ChemCam data with stratigraphic and geographic locations then reveals that the mean K 2Omore » abundance increases upward through the stratigraphic section. Chemical analyses across each unit can be represented as mixtures of several distinct chemical components, i.e., mineral phases, including K-bearing minerals, mafic silicates, Fe-oxides, and Fe-hydroxide/oxyhydroxides. Possible K-bearing minerals include alkali feldspar (including anorthoclase and sanidine) and K-bearing phyllosilicate such as illite. Mixtures of different source rocks, including a potassium-rich rock located on the rim and walls of Gale Crater, are the likely origin of observed chemical variations within each unit. Physical sorting may have also played a role in the enrichment in K in the Kimberley formation. The occurrence of these potassic sedimentary rocks provides additional evidence for the chemical diversity of the crust exposed at Gale Crater.« less

Preliminary examination of lunar samples from apollo 14.

PubMed

1971-08-20

The major findings of the preliminary examination of the lunar samples are as follows: 1) The samples from Fra Mauro base may be contrasted with those from Tranquillity base and the Ocean of Storms in that about half the Apollo 11 samples consist of basaltic rocks, and all but three Apollo 12 rocks are basaltic, whereas in the Apollo 14 samples only two rocks of the 33 rocks over 50 grams have basaltic textures. The samples from Fra Mauro base consist largely of fragmental rocks containing clasts of diverse lithologies and histories. Generally the rocks differ modally from earlier lunar samples in that they contain more plagioclase and contain orthopyroxene. 2) The Apollo 14 samples differ chemically from earlier lunar rocks and from their closest meteorite and terrestrial analogs. The lunar material closest in composition is the KREEP component (potassium, rare earth elements, phosphorus), "norite," "mottled gray fragments" (9) from the soil samples (in particular, sample 12033) from the Apollo 12 site, and the dark portion of rock 12013 (10). The Apollo 14 material is richer in titanium, iron, magnesium, and silicon than the Surveyor 7 material, the only lunar highlands material directly analyzed (11). The rocks also differ from the mare basalts, having much lower contents of iron, titanium, manganese, chromium, and scandium and higher contents of silicon, aluminum, zirconium, potassium, uranium, thorium, barium, rubidium, sodium, niobium, lithium, and lanthanum. The ratios of potassium to uranium are lower than those of terrestrial rocks and similar to those of earlier lunar samples. 3) The chemical composition of the soil closely resembles that of the fragmental rocks and the large basaltic rock (sample 14310) except that some elements (potassium, lanthanum, ytterbium, and barium) may be somewhat depleted in the soil with respect to the average rock composition. 4) Rocks display characteristic surface features of lunar material (impact microcraters, rounding) and shock effects similar to those observed in rocks and soil from the Apollo 11 and Apollo 12 missions. The rocks show no evidence of exposure to water, and their content of metallic iron suggests that they, like the Apollo 11 and Apollo 12 material, were formed and have remained in an environment with low oxygen activity. 5) The concentration of solar windimplanted material in the soil is large, as was the case for Apollo 11 and Apollo 12 soil. However, unlike previous fragmental rocks, Apollo 14 fragmental rocks possess solar wind contents ranging from approximately that of the soil to essentially zero, with most rocks investigated falling toward one extreme of this range. A positive correlation appears to exist between the solar wind components, carbon, and (20)Ne, of fragmental rocks and their friability (Fig. 12). 6) Carbon contents lie within the range of carbon contents for Apollo 11 and Apollo 12 samples. 7) Four fragmental rocks show surface exposure times (10 x 10(6) to 20 x 10(6) years) about an order of magnitude less than typical exposure times of Apollo 11 and Apollo 12 rocks. 8) A much broader range of soil mechanics properties was encountered at the Apollo 14 site than has been observed at the Apollo 11, Apollo 12, and Surveyor landing sites. At different points along the traverses of the Apollo 14 mission, lesser cohesion, coarser grain size, and greater resistance to penetration was found than at the Apollo 11 and Apollo 12 sites. These variations are indicative of a very complex, heterogeneous deposit. The soils are more poorly sorted, but the range of grain size is similar to those of the Apollo 11 and Apollo 12 soils. 9) No evidence of biological material has been found in the samples to date.

Models and Experiments of Melt-Rock Interaction in the Lower Oceanic Crust

NASA Astrophysics Data System (ADS)

Orton, W. H., II; Liang, Y.; Sanfilippo, A.

2017-12-01

Understanding the processes of melt-rock interaction in the lower oceanic crust isimportant to the interpretation of mid-ocean ridge basalt (MORB) and the petrogenesis of lowercrustal cumulates. Petrologic and geochemical studies of cumulates from the lower crustalregions of oceanic lithosphere have identified a number of textural and chemical features that arepertinent to melt-rock reaction (e.g., high-Mg# clinopyroxene oikocrysts within local gabbroicregions in troctolite bodies). The purpose of the present study is to provide some referenceexamples of MORB melt and cumulate mush interaction under controlled conditions. Suchsimple experiments are useful in sorting out crystallization, dissolution, re-precipitation, anddiffusion processes in the cumulate mush and in developing better models for melt transport andmelt-rock interaction in the lower oceanic crust.We performed piston cylinder experiments at 0.5-0.7 GPa and 1000-1250°C reacting anolivine or olivine + plagioclase cumulate mush and an intruding MORB melt in a graphite-linedmolybdenum capsule. Our experiments consist of two steps: (1) reaction at 1250°C for 10 to 24hours; and (2) reactive crystallization to a lower temperature through controlled cooling overseveral days. Cooling promotes in situ crystallization of interstitial melts, allowing us to bettercharacterize the mineral compositional trends produced and observed by melt-rock reaction andcrystallization. Reaction at 1250°C produced an olivine + melt mush with small rounded crystalscharacteristic of dissolution. Significant crystal settling was also observed at large melt-to- rockratio. Cooling with continued reaction resulted in the formation of a plagioclase matrix withpoikilitic clinopyroxene oikocrysts containing plagioclase and relict olivine as chadacrysts.Clinopyroxenes were in a reaction relationship with both plagioclase and olivine. In somesamples, multiple phases of clinopyroxene and plagioclase were present, each with differentcompositions, similar to those observed in the field-based studies. With these insights, a modelfor melt transport and melt-rock interaction in the lower oceanic crust has been developed andwill be used to study major and trace element fractionation during reactive melt migration in thecumulate mush.

Chip-based droplet sorting

DOEpatents

Beer, Neil Reginald; Lee, Abraham; Hatch, Andrew

2014-07-01

A non-contact system for sorting monodisperse water-in-oil emulsion droplets in a microfluidic device based on the droplet's contents and their interaction with an applied electromagnetic field or by identification and sorting.

Nanofluidic rocking Brownian motors

NASA Astrophysics Data System (ADS)

Skaug, Michael J.; Schwemmer, Christian; Fringes, Stefan; Rawlings, Colin D.; Knoll, Armin W.

2018-03-01

Control and transport of nanoscale objects in fluids is challenging because of the unfavorable scaling of most interaction mechanisms to small length scales. We designed energy landscapes for nanoparticles by accurately shaping the geometry of a nanofluidic slit and exploiting the electrostatic interaction between like-charged particles and walls. Directed transport was performed by combining asymmetric potentials with an oscillating electric field to achieve a rocking Brownian motor. Using gold spheres 60 nanometers in diameter, we investigated the physics of the motor with high spatiotemporal resolution, enabling a parameter-free comparison with theory. We fabricated a sorting device that separates 60- and 100-nanometer particles in opposing directions within seconds. Modeling suggests that the device separates particles with a radial difference of 1 nanometer.

Reducing 4D CT artifacts using optimized sorting based on anatomic similarity.

PubMed

Johnston, Eric; Diehn, Maximilian; Murphy, James D; Loo, Billy W; Maxim, Peter G

2011-05-01

Four-dimensional (4D) computed tomography (CT) has been widely used as a tool to characterize respiratory motion in radiotherapy. The two most commonly used 4D CT algorithms sort images by the associated respiratory phase or displacement into a predefined number of bins, and are prone to image artifacts at transitions between bed positions. The purpose of this work is to demonstrate a method of reducing motion artifacts in 4D CT by incorporating anatomic similarity into phase or displacement based sorting protocols. Ten patient datasets were retrospectively sorted using both the displacement and phase based sorting algorithms. Conventional sorting methods allow selection of only the nearest-neighbor image in time or displacement within each bin. In our method, for each bed position either the displacement or the phase defines the center of a bin range about which several candidate images are selected. The two dimensional correlation coefficients between slices bordering the interface between adjacent couch positions are then calculated for all candidate pairings. Two slices have a high correlation if they are anatomically similar. Candidates from each bin are then selected to maximize the slice correlation over the entire data set using the Dijkstra's shortest path algorithm. To assess the reduction of artifacts, two thoracic radiation oncologists independently compared the resorted 4D datasets pairwise with conventionally sorted datasets, blinded to the sorting method, to choose which had the least motion artifacts. Agreement between reviewers was evaluated using the weighted kappa score. Anatomically based image selection resulted in 4D CT datasets with significantly reduced motion artifacts with both displacement (P = 0.0063) and phase sorting (P = 0.00022). There was good agreement between the two reviewers, with complete agreement 34 times and complete disagreement 6 times. Optimized sorting using anatomic similarity significantly reduces 4D CT motion artifacts compared to conventional phase or displacement based sorting. This improved sorting algorithm is a straightforward extension of the two most common 4D CT sorting algorithms.

Development of a novel cell sorting method that samples population diversity in flow cytometry.

PubMed

Osborne, Geoffrey W; Andersen, Stacey B; Battye, Francis L

2015-11-01

Flow cytometry based electrostatic cell sorting is an important tool in the separation of cell populations. Existing instruments can sort single cells into multi-well collection plates, and keep track of cell of origin and sorted well location. However currently single sorted cell results reflect the population distribution and fail to capture the population diversity. Software was designed that implements a novel sorting approach, "Slice and Dice Sorting," that links a graphical representation of a multi-well plate to logic that ensures that single cells are sampled and sorted from all areas defined by the sort region/s. Therefore the diversity of the total population is captured, and the more frequently occurring or rarer cell types are all sampled. The sorting approach was tested computationally, and using functional cell based assays. Computationally we demonstrate that conventional single cell sorting can sample as little as 50% of the population diversity dependant on the population distribution, and that Slice and Dice sorting samples much more of the variety present within a cell population. We then show by sorting single cells into wells using the Slice and Dice sorting method that there are cells sorted using this method that would be either rarely sorted, or not sorted at all using conventional single cell sorting approaches. The present study demonstrates a novel single cell sorting method that samples much more of the population diversity than current methods. It has implications in clonal selection, stem cell sorting, single cell sequencing and any areas where population heterogeneity is of importance. © 2015 International Society for Advancement of Cytometry.

Automated spike sorting algorithm based on Laplacian eigenmaps and k-means clustering.

PubMed

Chah, E; Hok, V; Della-Chiesa, A; Miller, J J H; O'Mara, S M; Reilly, R B

2011-02-01

This study presents a new automatic spike sorting method based on feature extraction by Laplacian eigenmaps combined with k-means clustering. The performance of the proposed method was compared against previously reported algorithms such as principal component analysis (PCA) and amplitude-based feature extraction. Two types of classifier (namely k-means and classification expectation-maximization) were incorporated within the spike sorting algorithms, in order to find a suitable classifier for the feature sets. Simulated data sets and in-vivo tetrode multichannel recordings were employed to assess the performance of the spike sorting algorithms. The results show that the proposed algorithm yields significantly improved performance with mean sorting accuracy of 73% and sorting error of 10% compared to PCA which combined with k-means had a sorting accuracy of 58% and sorting error of 10%.A correction was made to this article on 22 February 2011. The spacing of the title was amended on the abstract page. No changes were made to the article PDF and the print version was unaffected.

Recent Results from the Mars Exploration Rover Spirit Mission

NASA Astrophysics Data System (ADS)

Squyres, S. W.

2005-05-01

Since arriving at the Columbia Hills, the Spirit rover's primary area of geologic investigation has been the West Spur of Husband Hill. Pancam images of West Spur rocks show morphology ranging from massive to finely layered. Microscopic Imager images show the rocks to be clastic in nature, with a substantial range in grain sizes. Grains vary from rounded to angular. Mini-TES data show little variability from one rock to the next, and the best fit to the IR spectral signature of the rocks is dominated by basaltic glass. The chemistry revealed by the APXS is broadly basaltic in nature, but substantially enhanced in P, S, Cl, and Br relative to plains rocks. Moessbauer data show that olivine is absent in West Spur rocks, and pyroxene signatures are weak. Fe oxides and oxyhydroxides are present. We interpret the rocks of the West Spur to be aqueously altered basaltic materials of volcaniclastic or impact origin. Since leaving the West Spur, Spirit has explored toward the northeast, higher onto Husband Hill. Loose rocks ("float") on the north flank of the hill are dominated by another poorly sorted clastic lithology that contains olivine and that has strikingly high abundances of Ti and P. Only a few bedrock outcrops have been identified on the main body of Husband Hill. All of these examined to date consist of a coarse-grained clastic rock dominated by basaltic chemistry and cemented by sulfate salts. Grain sizes range up to several mm, and sub-cm layering is present. Moessbauer data show pyroxene, olivine, and a high abundance of magnetite in the basaltic component. APXS data are consistent with the rock being up to 20 percent magnesium sulfate salts by mass, and microscopic images show a high degree of cementation by these salts.

Integration of rock physical signatures with depositional environments: A case study from East Coast of India

NASA Astrophysics Data System (ADS)

Mondal, Samit; Yadav, Ashok; Chatterjee, Rima

2018-01-01

Rock physical crossplots from different geological setup along eastern continental margin of India (ECMI) represent diversified signatures. To characterize the reservoirs in rock physics domain (velocity/modulus versus porosity) and then connecting the interpretation with geological model has been the objectives of the present study. Petrophysical logs (total porosity and volume of shale) from five wells located at sedimentary basins of ECMI have been analyzed to quantify the types of shale such as: laminated, dispersed and structural in reservoir. Presence of various shale types belonging to different depositional environments is coupled to define distinct rock physical crossplot trends for different geological setup. Wells from three different basins in East Coast of India have been used to capture diversity in depositional environments. Contact model theory has been applied to the crossplot to examine the change in rock velocity with change in reservoir properties like porosity and volume of shale. The depositional and diagenetic trends have been shown in the crossplot to showcase the prime controlling factor which reduces the reservoir porosity. Apart from that, the effect of geological factors like effective stress, sorting, packing, grain size uniformity on reservoir properties have also been focused. The rock physical signatures for distinct depositional environments, effect of crucial geological factors on crossplot trends coupled with established sedimentological models in drilled area are investigated to reduce the uncertainties in reservoir characterization for undrilled potentials.

Chemical variations in Yellowknife Bay formation sedimentary rocks analyzed by ChemCam on board the Curiosity rover on Mars

USGS Publications Warehouse

Mangold, Nicolas; Forni, Olivier; Dromart, G.; Stack, K.M.; Wiens, Roger C.; Gasnault, Olivier; Sumner, Dawn Y.; Nachon, Marion; Meslin, Pierre-Yves; Anderson, Ryan B.; Barraclough, Bruce; Bell, J.F.; Berger, G.; Blaney, D.L.; Bridges, J.C.; Calef, F.; Clark, Brian R.; Clegg, Samuel M.; Cousin, Agnes; Edgar, L.; Edgett, Kenneth S.; Ehlmann, B.L.; Fabre, Cecile; Fisk, M.; Grotzinger, John P.; Gupta, S.C.; Herkenhoff, Kenneth E.; Hurowitz, J.A.; Johnson, J. R.; Kah, Linda C.; Lanza, Nina L.; Lasue, Jeremie; Le Mouélic, S.; Lewin, Eric; Malin, Michael; McLennan, Scott M.; Maurice, S.; Melikechi, Noureddine; Mezzacappa, Alissa; Milliken, Ralph E.; Newsome, H.L.; Ollila, A.; Rowland, Scott K.; Sautter, Violaine; Schmidt, M.E.; Schroder, S.; D'Uston, C.; Vaniman, Dave; Williams, R.A.

2015-01-01

The Yellowknife Bay formation represents a ~5 m thick stratigraphic section of lithified fluvial and lacustrine sediments analyzed by the Curiosity rover in Gale crater, Mars. Previous works have mainly focused on the mudstones that were drilled by the rover at two locations. The present study focuses on the sedimentary rocks stratigraphically above the mudstones by studying their chemical variations in parallel with rock textures. Results show that differences in composition correlate with textures and both manifest subtle but significant variations through the stratigraphic column. Though the chemistry of the sediments does not vary much in the lower part of the stratigraphy, the variations in alkali elements indicate variations in the source material and/or physical sorting, as shown by the identification of alkali feldspars. The sandstones contain similar relative proportions of hydrogen to the mudstones below, suggesting the presence of hydrous minerals that may have contributed to their cementation. Slight variations in magnesium correlate with changes in textures suggesting that diagenesis through cementation and dissolution modified the initial rock composition and texture simultaneously. The upper part of the stratigraphy (~1 m thick) displays rocks with different compositions suggesting a strong change in the depositional system. The presence of float rocks with similar compositions found along the rover traverse suggests that some of these outcrops extend further away in the nearby hummocky plains.

A probability-based multi-cycle sorting method for 4D-MRI: A simulation study.

PubMed

Liang, Xiao; Yin, Fang-Fang; Liu, Yilin; Cai, Jing

2016-12-01

To develop a novel probability-based sorting method capable of generating multiple breathing cycles of 4D-MRI images and to evaluate performance of this new method by comparing with conventional phase-based methods in terms of image quality and tumor motion measurement. Based on previous findings that breathing motion probability density function (PDF) of a single breathing cycle is dramatically different from true stabilized PDF that resulted from many breathing cycles, it is expected that a probability-based sorting method capable of generating multiple breathing cycles of 4D images may capture breathing variation information missing from conventional single-cycle sorting methods. The overall idea is to identify a few main breathing cycles (and their corresponding weightings) that can best represent the main breathing patterns of the patient and then reconstruct a set of 4D images for each of the identified main breathing cycles. This method is implemented in three steps: (1) The breathing signal is decomposed into individual breathing cycles, characterized by amplitude, and period; (2) individual breathing cycles are grouped based on amplitude and period to determine the main breathing cycles. If a group contains more than 10% of all breathing cycles in a breathing signal, it is determined as a main breathing pattern group and is represented by the average of individual breathing cycles in the group; (3) for each main breathing cycle, a set of 4D images is reconstructed using a result-driven sorting method adapted from our previous study. The probability-based sorting method was first tested on 26 patients' breathing signals to evaluate its feasibility of improving target motion PDF. The new method was subsequently tested for a sequential image acquisition scheme on the 4D digital extended cardiac torso (XCAT) phantom. Performance of the probability-based and conventional sorting methods was evaluated in terms of target volume precision and accuracy as measured by the 4D images, and also the accuracy of average intensity projection (AIP) of 4D images. Probability-based sorting showed improved similarity of breathing motion PDF from 4D images to reference PDF compared to single cycle sorting, indicated by the significant increase in Dice similarity coefficient (DSC) (probability-based sorting, DSC = 0.89 ± 0.03, and single cycle sorting, DSC = 0.83 ± 0.05, p-value <0.001). Based on the simulation study on XCAT, the probability-based method outperforms the conventional phase-based methods in qualitative evaluation on motion artifacts and quantitative evaluation on tumor volume precision and accuracy and accuracy of AIP of the 4D images. In this paper the authors demonstrated the feasibility of a novel probability-based multicycle 4D image sorting method. The authors' preliminary results showed that the new method can improve the accuracy of tumor motion PDF and the AIP of 4D images, presenting potential advantages over the conventional phase-based sorting method for radiation therapy motion management.

Particle separation

NASA Technical Reports Server (NTRS)

Arnott, W. Patrick (Inventor); Chakrabarty, Rajan K. (Inventor); Moosmuller, Hans (Inventor)

2011-01-01

Embodiments of a method for selecting particles, such as based on their morphology, is disclosed. In a particular example, the particles are charged and acquire different amounts of charge, or have different charge distributions, based on their morphology. The particles are then sorted based on their flow properties. In a specific example, the particles are sorted using a differential mobility analyzer, which sorts particles, at least in part, based on their electrical mobility. Given a population of particles with similar electrical mobilities, the disclosed process can be used to sort particles based on the net charge carried by the particle, and thus, given the relationship between charge and morphology, separate the particles based on their morphology.

Particle separation

DOEpatents

Moosmuller, Hans [Reno, NV; Chakrabarty, Rajan K [Reno, NV; Arnott, W Patrick [Reno, NV

2011-04-26

Embodiments of a method for selecting particles, such as based on their morphology, is disclosed. In a particular example, the particles are charged and acquire different amounts of charge, or have different charge distributions, based on their morphology. The particles are then sorted based on their flow properties. In a specific example, the particles are sorted using a differential mobility analyzer, which sorts particles, at least in part, based on their electrical mobility. Given a population of particles with similar electrical mobilities, the disclosed process can be used to sort particles based on the net charge carried by the particle, and thus, given the relationship between charge and morphology, separate the particles based on their morphology.

When Seeing Is Knowing: The Role of Visual Cues in the Dissociation between Children's Rule Knowledge and Rule Use

ERIC Educational Resources Information Center

Buss, Aaron T.; Spencer, John P.

2012-01-01

The Dimensional Change Card Sort (DCCS) task requires children to switch from sorting cards based on shape or color to sorting based on the other dimension. Typically, 3-year-olds perseverate, whereas 4-year-olds flexibly sort by different dimensions. Zelazo and colleagues (1996, Cognitive Development, 11, 37-63) asked children questions about the…

Identification and genetic analysis of cancer cells with PCR-activated cell sorting

PubMed Central

Eastburn, Dennis J.; Sciambi, Adam; Abate, Adam R.

2014-01-01

Cell sorting is a central tool in life science research for analyzing cellular heterogeneity or enriching rare cells out of large populations. Although methods like FACS and FISH-FC can characterize and isolate cells from heterogeneous populations, they are limited by their reliance on antibodies, or the requirement to chemically fix cells. We introduce a new cell sorting technology that robustly sorts based on sequence-specific analysis of cellular nucleic acids. Our approach, PCR-activated cell sorting (PACS), uses TaqMan PCR to detect nucleic acids within single cells and trigger their sorting. With this method, we identified and sorted prostate cancer cells from a heterogeneous population by performing >132 000 simultaneous single-cell TaqMan RT-PCR reactions targeting vimentin mRNA. Following vimentin-positive droplet sorting and downstream analysis of recovered nucleic acids, we found that cancer-specific genomes and transcripts were significantly enriched. Additionally, we demonstrate that PACS can be used to sort and enrich cells via TaqMan PCR reactions targeting single-copy genomic DNA. PACS provides a general new technical capability that expands the application space of cell sorting by enabling sorting based on cellular information not amenable to existing approaches. PMID:25030902

Tephra from the 1979 soufriere explosive eruption.

PubMed

Sigurdsson, H

1982-06-04

The explosive phase of the 1979 Soufriere eruption produced 37.5 x 10(6) cubic meters (dense-rock equivalent) of tephra, consisting of about 40 percent juvenile basaltic andesite and 60 percent of a nonjuvenile component derived from the fragmentation of the 1971-1972 lava island during phreatomagmatic explosions. The unusually fine grain size, poor sorting, and bimodality of the land deposit are attributed to particle aggregation and the formation of accretionary lapilli in a wet eruption column.

A probability-based multi-cycle sorting method for 4D-MRI: A simulation study

PubMed Central

Liang, Xiao; Yin, Fang-Fang; Liu, Yilin; Cai, Jing

2016-01-01

Purpose: To develop a novel probability-based sorting method capable of generating multiple breathing cycles of 4D-MRI images and to evaluate performance of this new method by comparing with conventional phase-based methods in terms of image quality and tumor motion measurement. Methods: Based on previous findings that breathing motion probability density function (PDF) of a single breathing cycle is dramatically different from true stabilized PDF that resulted from many breathing cycles, it is expected that a probability-based sorting method capable of generating multiple breathing cycles of 4D images may capture breathing variation information missing from conventional single-cycle sorting methods. The overall idea is to identify a few main breathing cycles (and their corresponding weightings) that can best represent the main breathing patterns of the patient and then reconstruct a set of 4D images for each of the identified main breathing cycles. This method is implemented in three steps: (1) The breathing signal is decomposed into individual breathing cycles, characterized by amplitude, and period; (2) individual breathing cycles are grouped based on amplitude and period to determine the main breathing cycles. If a group contains more than 10% of all breathing cycles in a breathing signal, it is determined as a main breathing pattern group and is represented by the average of individual breathing cycles in the group; (3) for each main breathing cycle, a set of 4D images is reconstructed using a result-driven sorting method adapted from our previous study. The probability-based sorting method was first tested on 26 patients’ breathing signals to evaluate its feasibility of improving target motion PDF. The new method was subsequently tested for a sequential image acquisition scheme on the 4D digital extended cardiac torso (XCAT) phantom. Performance of the probability-based and conventional sorting methods was evaluated in terms of target volume precision and accuracy as measured by the 4D images, and also the accuracy of average intensity projection (AIP) of 4D images. Results: Probability-based sorting showed improved similarity of breathing motion PDF from 4D images to reference PDF compared to single cycle sorting, indicated by the significant increase in Dice similarity coefficient (DSC) (probability-based sorting, DSC = 0.89 ± 0.03, and single cycle sorting, DSC = 0.83 ± 0.05, p-value <0.001). Based on the simulation study on XCAT, the probability-based method outperforms the conventional phase-based methods in qualitative evaluation on motion artifacts and quantitative evaluation on tumor volume precision and accuracy and accuracy of AIP of the 4D images. Conclusions: In this paper the authors demonstrated the feasibility of a novel probability-based multicycle 4D image sorting method. The authors’ preliminary results showed that the new method can improve the accuracy of tumor motion PDF and the AIP of 4D images, presenting potential advantages over the conventional phase-based sorting method for radiation therapy motion management. PMID:27908178

Mass, energy and material balances of SRF production process. Part 2: SRF produced from construction and demolition waste.

PubMed

Nasrullah, Muhammad; Vainikka, Pasi; Hannula, Janne; Hurme, Markku; Kärki, Janne

2014-11-01

In this work, the fraction of construction and demolition waste (C&D waste) complicated and economically not feasible to sort out for recycling purposes is used to produce solid recovered fuel (SRF) through mechanical treatment (MT). The paper presents the mass, energy and material balances of this SRF production process. All the process streams (input and output) produced in MT waste sorting plant to produce SRF from C&D waste are sampled and treated according to CEN standard methods for SRF. Proximate and ultimate analysis of these streams is performed and their composition is determined. Based on this analysis and composition of process streams their mass, energy and material balances are established for SRF production process. By mass balance means the overall mass flow of input waste material stream in the various output streams and material balances mean the mass flow of components of input waste material stream (such as paper and cardboard, wood, plastic (soft), plastic (hard), textile and rubber) in the various output streams of SRF production process. The results from mass balance of SRF production process showed that of the total input C&D waste material to MT waste sorting plant, 44% was recovered in the form of SRF, 5% as ferrous metal, 1% as non-ferrous metal, and 28% was sorted out as fine fraction, 18% as reject material and 4% as heavy fraction. The energy balance of this SRF production process showed that of the total input energy content of C&D waste material to MT waste sorting plant, 74% was recovered in the form of SRF, 16% belonged to the reject material and rest 10% belonged to the streams of fine fraction and heavy fraction. From the material balances of this process, mass fractions of plastic (soft), paper and cardboard, wood and plastic (hard) recovered in the SRF stream were 84%, 82%, 72% and 68% respectively of their input masses to MT plant. A high mass fraction of plastic (PVC) and rubber material was found in the reject material stream. Streams of heavy fraction and fine fraction mainly contained non-combustible material (such as stone/rock, sand particles and gypsum material). Copyright © 2014 Elsevier Ltd. All rights reserved.

SEM-MLA-based Investigation of the Composition of Mafic Volcaniclastic Deposits from the Paraná Large Igneous Province, Brazil

NASA Astrophysics Data System (ADS)

Höfig, D. F.; Höfig, T. W.; Licht, O. A. B.; Haser, S.; Valore, L.

2017-12-01

Mafic volcaniclastic deposits (MVDs) have been widely reported in Large Igneous Provinces around the world, except for the Paraná Province (review by Ross et al., 2005: J Volcanol Geotherm Res, 145, pp. 281-314). Recent geochemical classification for this unit highlights, however, the occurrence of such deposits, connected to basic lava flows, mostly those High Ti - High P ones (Licht.: J Volcanol Geotherm Res, in press). In southern Brazil, MVDs intercalated with lava flows have been reported at 680 sites, showing conspicuous poorly sorted polymictic breccia at the base, grading to tuff breccias and red silicified tuffs at the top. Newly sampled rocks of Paraná mafic volcanoclastic deposits unravel important information about the composition utilizing Scanning Electron Microscopy-based Mineral Liberation Analysis. Overall, they show similar mineralogy presenting obsidian (25-40%), different phases of iron oxide (5-20%), quartz (10-25%), plagioclase (5-25%), celadonite (5-25%), and chlorite (5-10%). The breccias reveal a greater content of celadonite due to the presence of altered hypohyaline and hypocrystalline basaltic shards, whereas the tuffs are more enriched in glass. Different generations of plagioclase are attributed to various basalt shards and clasts as well vitroclasts found in the matrix. It is proposed that the MVDs were generated by explosive events due the interaction between the ascending mafic magma and deep aquifer systems and its siliciclastic matrix represents the country rock, i.e., the underneath Paleozoic sedimentary sequence of Paraná Basin.

Algorithm Sorts Groups Of Data

NASA Technical Reports Server (NTRS)

Evans, J. D.

1987-01-01

For efficient sorting, algorithm finds set containing minimum or maximum most significant data. Sets of data sorted as desired. Sorting process simplified by reduction of each multielement set of data to single representative number. First, each set of data expressed as polynomial with suitably chosen base, using elements of set as coefficients. Most significant element placed in term containing largest exponent. Base selected by examining range in value of data elements. Resulting series summed to yield single representative number. Numbers easily sorted, and each such number converted back to original set of data by successive division. Program written in BASIC.

Geology of the Gusec cratered plains from the Spirit rover transverse

NASA Technical Reports Server (NTRS)

Golombek, M. P.; Crumpler, L. S.; Grant, J. A.; Greely, R.; Cabrol, N. A.; Parker, T. J.; Rice, J. W., Jr.; Ward, J. G.; Arvidson, R. E.; Moersch, J. E.;

Microfluidic cell sorting: a review of the advances in the separation of cells from debulking to rare cell isolation.

PubMed

Shields, C Wyatt; Reyes, Catherine D; López, Gabriel P

2015-03-07

Accurate and high throughput cell sorting is a critical enabling technology in molecular and cellular biology, biotechnology, and medicine. While conventional methods can provide high efficiency sorting in short timescales, advances in microfluidics have enabled the realization of miniaturized devices offering similar capabilities that exploit a variety of physical principles. We classify these technologies as either active or passive. Active systems generally use external fields (e.g., acoustic, electric, magnetic, and optical) to impose forces to displace cells for sorting, whereas passive systems use inertial forces, filters, and adhesion mechanisms to purify cell populations. Cell sorting on microchips provides numerous advantages over conventional methods by reducing the size of necessary equipment, eliminating potentially biohazardous aerosols, and simplifying the complex protocols commonly associated with cell sorting. Additionally, microchip devices are well suited for parallelization, enabling complete lab-on-a-chip devices for cellular isolation, analysis, and experimental processing. In this review, we examine the breadth of microfluidic cell sorting technologies, while focusing on those that offer the greatest potential for translation into clinical and industrial practice and that offer multiple, useful functions. We organize these sorting technologies by the type of cell preparation required (i.e., fluorescent label-based sorting, bead-based sorting, and label-free sorting) as well as by the physical principles underlying each sorting mechanism.

Microfluidic Cell Sorting: A Review of the Advances in the Separation of Cells from Debulking to Rare Cell Isolation

PubMed Central

Shields, C. Wyatt; Reyes, Catherine D.; López, Gabriel P.

2015-01-01

Accurate and high throughput cell sorting is a critical enabling technology in molecular and cellular biology, biotechnology, and medicine. While conventional methods can provide high efficiency sorting in short timescales, advances in microfluidics have enabled the realization of miniaturized devices offering similar capabilities that exploit a variety of physical principles. We classify these technologies as either active or passive. Active systems generally use external fields (e.g., acoustic, electric, magnetic, and optical) to impose forces to displace cells for sorting, whereas passive systems use inertial forces, filters, and adhesion mechanisms to purify cell populations. Cell sorting on microchips provides numerous advantages over conventional methods by reducing the size of necessary equipment, eliminating potentially biohazardous aerosols, and simplifying the complex protocols commonly associated with cell sorting. Additionally, microchip devices are well suited for parallelization, enabling complete lab-on-a-chip devices for cellular isolation, analysis, and experimental processing. In this review, we examine the breadth of microfluidic cell sorting technologies, while focusing on those that offer the greatest potential for translation into clinical and industrial practice and that offer multiple, useful functions. We organize these sorting technologies by the type of cell preparation required (i.e., fluorescent label-based sorting, bead-based sorting, and label-free sorting) as well as by the physical principles underlying each sorting mechanism. PMID:25598308

A multispectral sorting device for isolating single wheat kernels with high protein content

USDA-ARS?s Scientific Manuscript database

Automated sorting of single wheat kernels according to protein content was demonstrated using two novel multispectral sorting devices with different spectral ranges; 470-1070 nm (silicone based detector) and 910nm-1550 nm (InGaAs based detector). The multispectral data were acquired by rapidly (~12...

Mineralogy and chemistry of planets and meteorites

NASA Technical Reports Server (NTRS)

1983-01-01

The data collection and the interpretation with respect to the mineralogy of meteoritic and terrestrial samples are summarized. The key conclusion is that the Moon underwent a series of melting episodes with complex crystal-liquid differentiation. It was not possible to determine whether the Moon melted completely or only partially. The stage is now set for a systematical geochemical and geophysical survey of the Moon. Emphasis was moved to meteorites in order to sort out their interrelationships from the viewpoint of mineral chemistry. Several parent bodies are needed for the achondrites with different chemical properties. Exploration of Mars is required to test ideas based on the possible assignment of shergottites, nakhlites and chassignite to this planet. Early rocks on the Earth have properties consistent with a heavy bombardment and strong volcanic activity prior to 4 billion years ago.

Evaluating Connectivity between Marine Protected Areas Using CODAR High-Frequency Radar

DTIC Science & Technology

2010-06-01

SMCA/SMR, (6) Big Creek SMCA/SMR, (7) Piedras Blancas SMCA/SMR, (8) Cambria SMCA/White Rock SMCA, (9) Pt. Buchon SMCA/SMR, and (10) Vandenberg SMR...52 grid- points, (7) Piedras Blancas 47 grid-points, (8) Cambria 20 grid-points, (9) Pt. Buchon 45 grid- points, and (10) the Vandenberg MPA had 62...COLUMN HEADERS. Back-projected from: (Sorted north- to-south) Año Nuevo Soquel Canyon Portuguese Ledge Point Lobos Point Sur Big Creek Piedras

Application of visible spectroscopy in waste sorting

NASA Astrophysics Data System (ADS)

Spiga, Philippe; Bourely, Antoine

2011-10-01

Today, waste recycling, (bottles, papers...), is a mechanical operation: the waste are crushed, fused and agglomerated in order to obtain new manufactured products (e.g. new bottles, clothes ...). The plastics recycling is the main application in the color sorting process. The colorless plastics recovered are more valuable than the colored plastics. Other emergent applications are in the paper sorting, where the main goal is to sort dyed paper from white papers. Up to now, Pellenc Selective Technologies has manufactured color sorting machines based on RGB cameras. Three dimensions (red, green and blue) are no longer sufficient to detect low quantities of dye in the considered waste. In order to increase the efficiency of the color detection, a new sorting machine, based on visible spectroscopy, has been developed. This paper presents the principles of the two approaches and their difference in terms of sorting performance, making visible spectroscopy a clear winner.

Parallel sort with a ranged, partitioned key-value store in a high perfomance computing environment

DOEpatents

Bent, John M.; Faibish, Sorin; Grider, Gary; Torres, Aaron; Poole, Stephen W.

2016-01-26

Improved sorting techniques are provided that perform a parallel sort using a ranged, partitioned key-value store in a high performance computing (HPC) environment. A plurality of input data files comprising unsorted key-value data in a partitioned key-value store are sorted. The partitioned key-value store comprises a range server for each of a plurality of ranges. Each input data file has an associated reader thread. Each reader thread reads the unsorted key-value data in the corresponding input data file and performs a local sort of the unsorted key-value data to generate sorted key-value data. A plurality of sorted, ranged subsets of each of the sorted key-value data are generated based on the plurality of ranges. Each sorted, ranged subset corresponds to a given one of the ranges and is provided to one of the range servers corresponding to the range of the sorted, ranged subset. Each range server sorts the received sorted, ranged subsets and provides a sorted range. A plurality of the sorted ranges are concatenated to obtain a globally sorted result.

A monolithic glass chip for active single-cell sorting based on mechanical phenotyping.

PubMed

Faigle, Christoph; Lautenschläger, Franziska; Whyte, Graeme; Homewood, Philip; Martín-Badosa, Estela; Guck, Jochen

2015-03-07

The mechanical properties of biological cells have long been considered as inherent markers of biological function and disease. However, the screening and active sorting of heterogeneous populations based on serial single-cell mechanical measurements has not been demonstrated. Here we present a novel monolithic glass chip for combined fluorescence detection and mechanical phenotyping using an optical stretcher. A new design and manufacturing process, involving the bonding of two asymmetrically etched glass plates, combines exact optical fiber alignment, low laser damage threshold and high imaging quality with the possibility of several microfluidic inlet and outlet channels. We show the utility of such a custom-built optical stretcher glass chip by measuring and sorting single cells in a heterogeneous population based on their different mechanical properties and verify sorting accuracy by simultaneous fluorescence detection. This offers new possibilities of exact characterization and sorting of small populations based on rheological properties for biological and biomedical applications.

Stratification in the lunar regolith - A preliminary view

NASA Technical Reports Server (NTRS)

Duke, M. B.; Nagle, J. S.

1975-01-01

Although our knowledge of lunar regolith stratification is incomplete, several categories of thick and thin strata have been identified. Relatively thick units average 2 to 3 cm in thickness, and appear surficially to be massive. On more detailed examination, these units can be uniformly fine-grained, can show internal trends, or can show internal variations which apparently are random. Other thick units contain soil clasts apparently reworked from underlying units. Thin laminae average approximately 1 mm in thickness; lenticular distribution and composition of some thin laminae indicates that they are fillets shed from adjacent rock fragments. Other dark fine-grained well-sorted thin laminae appear to be surficial zones reworked by micrometeorites. Interpretations of stratigraphic succession can be strengthened by the occurrence of characteristic coarse rock fragments and the orientation of large spatter agglutinates, which are commonly found in their original depositional orientation.

The system controlling the composition of clastic sediments

USGS Publications Warehouse

Johnsson, Mark J.

1993-01-01

The composition of clastic sediments and rocks is controlled by a complex suite of parameters operating during pedogenesis, erosion, transport, deposition, and burial. The principal first-order parameters include source rock composition, modification by chemical weathering, mechanical disaggregation and abrasion, authigenic inputs, hydrodynamic sorting, and diagenesis. Each of these first-order parameters is influenced to varying degrees by such factors as the tectonic settings of the source region, transportational system and depositional environment, climate, vegetation, relief, slope, and the nature and energy of transportational and depositional systems. These factors are not independent; rather a complicated web of interrelationships and feedback mechanisms causes many factors to be modulated by others. Accordingly, processes controlling the composition of clastic sediments are best viewed as constituting a system, and in evaluating compositional information the dynamics of the system must be considered as whole.

Regolith evolution in the laboratory - Scaling dissimilar comminution experiments

NASA Technical Reports Server (NTRS)

Cintala, Mark J.; Horz, Friedrich

1990-01-01

Repeated impacts into fragmental targets simulating unconsolidated debris on planetary surfaces have provided empirical insight into the evolution of planetary regoliths. The techniques of dimensional analysis have been employed to quantify and examine the relationships between the more important variables in the evolution of these experimental regoliths. Application of this method to the results of 10 experimental series shows that the quantity of comminuted target mass is directly proportional to (1) the number of impacts, (2) the diameter of the projectile, (3) the mean size of the crystals, (4) the mean grain size of the evolving regolith, (5) the total target mass, (6) the impactor density, and (7) the ratio of the impact velocity to the velocity of sound in the target rock. The comminuted mass is inversely proportional to the density of the target rock and the sorting of the regolith.

Spin-the-bottle Sort and Annealing Sort: Oblivious Sorting via Round-robin Random Comparisons

PubMed Central

Goodrich, Michael T.

2013-01-01

We study sorting algorithms based on randomized round-robin comparisons. Specifically, we study Spin-the-bottle sort, where comparisons are unrestricted, and Annealing sort, where comparisons are restricted to a distance bounded by a temperature parameter. Both algorithms are simple, randomized, data-oblivious sorting algorithms, which are useful in privacy-preserving computations, but, as we show, Annealing sort is much more efficient. We show that there is an input permutation that causes Spin-the-bottle sort to require Ω(n2 log n) expected time in order to succeed, and that in O(n2 log n) time this algorithm succeeds with high probability for any input. We also show there is a specification of Annealing sort that runs in O(n log n) time and succeeds with very high probability. PMID:24550575

Label-free density difference amplification-based cell sorting.

PubMed

Song, Jihwan; Song, Minsun; Kang, Taewook; Kim, Dongchoul; Lee, Luke P

2014-11-01

The selective cell separation is a critical step in fundamental life sciences, translational medicine, biotechnology, and energy harvesting. Conventional cell separation methods are fluorescent activated cell sorting and magnetic-activated cell sorting based on fluorescent probes and magnetic particles on cell surfaces. Label-free cell separation methods such as Raman-activated cell sorting, electro-physiologically activated cell sorting, dielectric-activated cell sorting, or inertial microfluidic cell sorting are, however, limited when separating cells of the same kind or cells with similar sizes and dielectric properties, as well as similar electrophysiological phenotypes. Here we report a label-free density difference amplification-based cell sorting (dDACS) without using any external optical, magnetic, electrical forces, or fluidic activations. The conceptual microfluidic design consists of an inlet, hydraulic jump cavity, and multiple outlets. Incoming particles experience gravity, buoyancy, and drag forces in the separation chamber. The height and distance that each particle can reach in the chamber are different and depend on its density, thus allowing for the separation of particles into multiple outlets. The separation behavior of the particles, based on the ratio of the channel heights of the inlet and chamber and Reynolds number has been systematically studied. Numerical simulation reveals that the difference between the heights of only lighter particles with densities close to that of water increases with increasing the ratio of the channel heights, while decreasing Reynolds number can amplify the difference in the heights between the particles considered irrespective of their densities.

A Computer Environment for Beginners' Learning of Sorting Algorithms: Design and Pilot Evaluation

ERIC Educational Resources Information Center

Kordaki, M.; Miatidis, M.; Kapsampelis, G.

2008-01-01

This paper presents the design, features and pilot evaluation study of a web-based environment--the SORTING environment--for the learning of sorting algorithms by secondary level education students. The design of this environment is based on modeling methodology, taking into account modern constructivist and social theories of learning while at…

ANALYSIS/PLOT: a graphics package for use with the SORT/ANALYSIS data bases

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sady, C.A.

1983-08-01

This report describes a graphics package that is used with the SORT/ANALYSIS data bases. The data listed by the SORT/ANALYSIS program can be presented in pie, bar, line, or Gantt chart form. Instructions for the use of the plotting program and descriptions of the subroutines are given in the report.

Hematite on the Surface of Meridiani Planum and Gusev Crater

NASA Technical Reports Server (NTRS)

Brueckner, J.; Dreibus, G.; Jagoutz, E.; Gellert, R.; Lugmair, G.; Rieder, R.; Waenke, H.; Zipfel, J.; Klingelhoefer, G.; Clark, B. C.

2005-01-01

Meridiani Planum was selected as a landing side for the Rover Opportunity because of an indication of hematite observed from orbit. Meridiani Planum consists of sorted sands with aeolian features like ripples and desert pavements. In impact craters, a high-albedo layered bedrock is exposed. The soil is a mixture of: (i) fine sand material in the size ranges of 50 to 150 m, (ii) sub-angular, irregular particles of 0.5 to 5 mm size with submillimeter circular voids that are most likely vesicular basaltic fragments, and (iii) spherules with a restricted grain size between 4 and 6 mm. The Mini-TES on board the rover Opportunity identified a hematite signature at distance resulting from mm-sized spherules as determined by the Moussbauer Spectrometer. Small quantities of similar spherules (2 vol. %) were found in rock exposures in Eagle crater and were interpreted as concretions that formed by precipitation from aqueous fluids inside sedimentary rocks. At Gusev crater no hematite was observed until sol 90 except for layering on a rock. Our investigations of hematite bearing materials, measured by the Alpha Particle X-ray Spectrometer (APXS), Moussbauer Spectrometer (MB), and Microscopic Imager (MI), provide a more integrated view of different occurrences of hematite on the martian surface. Chemistry of soils and rocks: Chemical compositions

Standardizing texture and facies codes for a process-based classification of clastic sediment and rock

USGS Publications Warehouse

Farrell, K.M.; Harris, W.B.; Mallinson, D.J.; Culver, S.J.; Riggs, S.R.; Pierson, J.; ,; Lautier, J.C.

2012-01-01

Proposed here is a universally applicable, texturally based classification of clastic sediment that is independent from composition, cementation, and geologic environment, is closely allied to process sedimentology, and applies to all compartments in the source-to-sink system. The classification is contingent on defining the term "clastic" so that it is independent from composition or origin and includes any particles or grains that are subject to erosion, transportation, and deposition. Modifications to Folk's (1980) texturally based classification that include applying new assumptions and defining a broader array of textural fields are proposed to accommodate this. The revised ternary diagrams include additional textural fields that better define poorly sorted and coarse-grained deposits, so that all end members (gravel, sand, and mud size fractions) are included in textural codes. Revised textural fields, or classes, are based on a strict adherence to volumetric estimates of percentages of gravel, sand, and mud size grain populations, which by definition must sum to 100%. The new classification ensures that descriptors are applied consistently to all end members in the ternary diagram (gravel, sand, and mud) according to several rules, and that none of the end members are ignored. These modifications provide bases for standardizing vertical displays of texture in graphic logs, lithofacies codes, and their derivatives- hydrofacies. Hydrofacies codes are nondirectional permeability indicators that predict aquifer or reservoir potential. Folk's (1980) ternary diagram for fine-grained clastic sediments (sand, silt, and clay size fractions) is also revised to preserve consistency with the revised diagram for gravel, sand, and mud. Standardizing texture ensures that the principles of process sedimentology are consistently applied to compositionally variable rock sequences, such as mixed carbonate-siliciclastic ramp settings, and the extreme ends of depositional systems.

Diagenesis and reservoir quality of Bhuban sandstones (Neogene), Titas Gas Field, Bengal Basin, Bangladesh

NASA Astrophysics Data System (ADS)

Aminul Islam, M.

2009-06-01

This study deals with the diagenesis and reservoir quality of sandstones of the Bhuban Formation located at the Titas Gas Field of Bengal Basin. Petrographic study including XRD, CL, SEM and BSE image analysis and quantitative determination of reservoir properties were carried out for this study. The sandstones are fine to medium-grained, moderately well to well sorted subfeldspathic arenites with subordinate feldspathic and lithic arenites. The diagenetic processes include clay infiltration, compaction and cementation (quartz overgrowth, chlorite, kaolinite, calcite and minor amount of pyrite, dolomite and K-feldspar overgrowth). Quartz is the dominant pore occluding cement and generally occurred as small euhedral crystals, locally as large pyramidal crystals in the primary pores. Pressure solution derived from grain contact is the main contributor of quartz overgrowths. Chlorite occurs as pore-lining and pore filling cement. In some cases, chlorite helps to retain porosity by preventing quartz overgrowth. In some restricted depth interval, pore-occlusion by calcite cement is very much intense. Kaolinite locally developed as vermiform and accelerated the minor porosity loss due to pore-occlusion. Kaolinite/chlorite enhances ineffective microporosity. Kaolinite is a by-product of feldspar leaching in the presence of acidic fluid produced during the maturation of organic matter in the adjacent Miocene or deeper Oligocene source rocks. The relation between diagenesis and reservoir quality is as follows: the initial porosity was decreased by compaction and cementation and then increased by leaching of the metastable grains and dissolution of cement. Good quality reservoir rocks were deposited in fluvial environment and hence quality of reservoir rocks is also environment selective. Porosity and permeability data exhibit good inverse correlation with cement. However, some data points indicate multiple controls on permeability. Reservoir quality is thus controlled by pore occluding cement, textural parameters (grain size, pore size and sorting) and depositional environment. The reservoir finally resumed partly its pre-cementation quality after development of secondary porosity.

My eSorts and Digital Extensions of Word Study

ERIC Educational Resources Information Center

Zucker, Tricia A.; Invernizzi, Marcia

2008-01-01

"My eSorts" is a strategy for helping children learn to read and spell in a socially motivated context. It is based on developmental spelling research and the word study approach to teaching phonics and spelling. "eSorting" employs digital desktop publishing tools that allow children to author their own electronic word sorts and then share these…

Design of monitoring system for mail-sorting based on the Profibus S7 series PLC

NASA Astrophysics Data System (ADS)

Zhang, W.; Jia, S. H.; Wang, Y. H.; Liu, H.; Tang, G. C.

2017-01-01

With the rapid development of the postal express, the workload of mail sorting is increasing, but the automatic technology of mail sorting is not mature enough. In view of this, the system uses Siemens S7-300 PLC as the main station controller, PLC of Siemens S7-200/400 is from the station controller, through the man-machine interface configuration software MCGS, PROFIBUS-DP communication, RFID technology and mechanical sorting hand achieve mail classification sorting monitoring. Among them, distinguish mail-sorting by scanning RFID posted in the mail electronic bar code (fixed code), the system uses the corresponding controller on the acquisition of information processing, the processed information transmit to the sorting manipulator by PROFIBUS-DP. The system can realize accurate and efficient mail sorting, which will promote the development of mail sorting technology.

Size-based cell sorting with a resistive pulse sensor and an electromagnetic pump in a microfluidic chip.

PubMed

Song, Yongxin; Li, Mengqi; Pan, Xinxiang; Wang, Qi; Li, Dongqing

2015-02-01

An electrokinetic microfluidic chip is developed to detect and sort target cells by size from human blood samples. Target-cell detection is achieved by a differential resistive pulse sensor (RPS) based on the size difference between the target cell and other cells. Once a target cell is detected, the detected RPS signal will automatically actuate an electromagnetic pump built in a microchannel to push the target cell into a collecting channel. This method was applied to automatically detect and sort A549 cells and T-lymphocytes from a peripheral fingertip blood sample. The viability of A549 cells sorted in the collecting well was verified by Hoechst33342 and propidium iodide staining. The results show that as many as 100 target cells per minute can be sorted out from the sample solution and thus is particularly suitable for sorting very rare target cells, such as circulating tumor cells. The actuation of the electromagnetic valve has no influence on RPS cell detection and the consequent cell-sorting process. The viability of the collected A549 cell is not impacted by the applied electric field when the cell passes the RPS detection area. The device described in this article is simple, automatic, and label-free and has wide applications in size-based rare target cell sorting for medical diagnostics. © 2014 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Designing a monitoring network for contaminated ground water in fractured chalk

DOE Office of Scientific and Technical Information (OSTI.GOV)

Nativ, R.; Adar, E.M.; Becker, A.

1999-01-01

One of the challenges of monitoring network design in a fractured rock setting is the heterogeneity of the rocks. This paper summarizes the activities and problems associated with the monitoring of contaminated groundwater in porous, low-permeability fractured chalk in the Negev Desert, Israel. Preferential flow documented in the study area required siting the monitoring boreholes in the predominant fracture systems. Lineaments traced from aerial photographs were examined in the field to sort out the large-extension, through-going, multilayer fracture systems crossing the study area. At each proposed drilling site, these fractures were exposed below the sediment cover using trenches. Slanted boreholesmore » were drilled at a distance from the fracture systems so that each borehole would intersect the targeted fracture plane below the water table. Based on their short recovery period and contaminated ground water, these newly drilled, fracture-oriented boreholes appeared to be better connected to preferential flowpaths crossing the industrial site than the old boreholes existing on site. Other considerations concerning the drilling and logging of monitoring boreholes in a fractured media were: (1) coring provides better documentation of the vertical fracture distribution, but dry augering is less costly and enables immediate ground water sampling and the sampling of vadose rock for contaminant analysis; (2) caliper and TV camera logs appear to provide only partial information regarding the vertical fracture distribution; and (3) the information gained by deepening the monitoring boreholes and testing fractures crossing their uncased walls has to be carefully weighed against the risk of potential cross-contamination through the monitoring boreholes, which is enhanced in fractured media.« less

Fault rock texture and porosity type in Triassic dolostones

NASA Astrophysics Data System (ADS)

Agosta, Fabrizio; Grieco, Donato; Bardi, Alessandro; Prosser, Giacomo

2015-04-01

Preliminary results of an ongoing project aimed at deciphering the micromechanics and porosity evolution associated to brittle deformation of Triassic dolostones are presented. Samples collected from high-angle, oblique-slip, 10's to 100's m-throw normal faults crosscutting Mesozoic carbonates of the Neo Tethys (Campanian-Lucanian Platform) are investigated by mean of field geological mapping, optical microscopy, SEM and image analyses. The goal is to characterize in detail composition, texture and porosity of cataclastic rocks in order to assess the structural architecture of dolomitic fault cores. Moreover, the present study addresses the time-space control exerted by several micro-mechanisms such as intragranular extensional fracturing, chipping and shear fracturing, which took place during grain rolling and crushing within the evolving faults, on type, amount, dimensions and distribution of micropores present within the cataclastic fault cores. Study samples are representative of well-exposed dolomitic fault cores of oblique-slip normal faults trending either NW-SE or NE-SW. The high-angle normal faults crosscut the Mesozoic carbonates of the Campanian-Lucanian Platform, which overrode the Lagonegro succession by mean of low-angle thrust faults. Fault throws are measured by considering the displaced thrust faults as key markers after large scale field mapping (1:10,000 scale) of the study areas. In the field, hand samples were selected according to their distance from main slip surfaces and, in some case, along secondary slip surfaces. Microscopy analysis of about 100 oriented fault rock samples shows that, mostly, the study cataclastic rocks are made up of dolomite and sparse, minute survivor silicate grains deriving from the Lagonegro succession. In order to quantitatively assess the main textural classes, a great attention is paid to the grain-matrix ratio, grain sphericity, grain roundness, and grain sorting. By employing an automatic box-counting technique, the fractal dimension of representative samples is also computed. Results of such a work shows that five main textural types are present: 1) fractured and fragmented dolomites; 2) protocataclasites characterized by intense intragranular extensional fracturing; 3) cataclasites due to a chipping-dominated mechanism; 4) cataclasites and ultracataclasites with pronounced shear fracturing; 5) cemented fault rocks, which localize along the main slip surfaces. The first four textural types are therefore indicative to the fault rock maturity within individual cataclastic fault cores. A negative correlation among grain-matrix ratio and grain sphericity, roundness and sorting is computed, which implies that ultracataclasites are made up of more spherical and rounded smaller grains relative to cataclasites and protocataclasites. Each textural type shows distinct D0-values (box-counting dimension). As expected, a good correlation between the D0-value and fault rock maturity is computed. Ongoing analysis of selected images obtained from representative samples of the five textural classes will shed lights on the relative role played by the aforementioned micro-mechanisms on the porosity evolution within the cataclastic fault cores.

Sources of acid and metals from the weathering of the Dinero waste pile, Lake Fork watershed, Leadville, Colorado

USGS Publications Warehouse

Diehl, S.F.; Hageman, Phil L.; Smith, Kathleen S.; Herron, J.T.; Desborough, G.A.

2005-01-01

Two trenches were dug into the south Dinero mine-waste pile near Leadville, Colorado, to study the weathering of rock fragments and the mineralogic sources of metal contaminants in the surrounding wetland and Lake Fork Watershed. Water seeping from the base of the south Dinero waste-rock pile was pH 2.9, whereas leachate from a composite sample of the rock waste was pH 3.3. The waste pile was mostly devoid of vegetation, open to infiltration of precipitation, and saturated at the base because of placement in the wetland. The south mine-waste pile is composed of poorly sorted material, ranging from boulder-size to fine-grained rock fragments. The trenches showed both matrix-supported and clast-supported zones, with faint horizontal color banding, suggesting zonation of Fe oxides. Secondary minerals such as jarosite and gypsum occurred throughout the depth of the trenches. Infiltration of water and transport of dissolved material through the pile is evidenced by optically continuous secondary mineral deposits that fill or line voids. Iron-sulfate material exhibits microlaminations with shrinkage cracking and preferential dissolution of microlayers that evidence drying and wetting events. In addition to fluids, submicron-sized to very fine-grained particles such as jarosite are transported through channel ways in the pile. Rock fragments are coated with a mixture of clay, jarosite, and manganese oxides. Dissolution of minerals is a primary source of metals. Skeletal remnants of grains, outlined by Fe-oxide minerals, are common. Potassium jarosite is the most abundant jarosite phase, but Pb-and Ag-bearing jarosite are common. Grain-sized clusters of jarosite suggest that entire sulfide grains were replaced by very fine-grained jarosite crystals. The waste piles were removed from the wetland and reclaimed upslope in 2003. This was an opportunity to test methods to identify sources of acid and metals and metal transport processes within a waste pile. A series of entrapment ponds, lined with limestone rip rap, was created where the mine waste was once situated. A flooded adit discharges low-pH metal-bearing waters into the ponds. A white (Zn, Mn)-sulfate precipitate was observed in 2003 around the edges of the most distal pond.

Research of grasping algorithm based on scara industrial robot

NASA Astrophysics Data System (ADS)

Peng, Tao; Zuo, Ping; Yang, Hai

2018-04-01

As the tobacco industry grows, facing the challenge of the international tobacco giant, efficient logistics service is one of the key factors. How to complete the tobacco sorting task of efficient economy is the goal of tobacco sorting and optimization research. Now the cigarette distribution system uses a single line to carry out the single brand sorting task, this article adopts a single line to realize the cigarette sorting task of different brands. Using scara robot special algorithm for sorting and packaging, the optimization scheme significantly enhances the indicators of smoke sorting system. Saving labor productivity, obviously improve production efficiency.

A Binary Array Asynchronous Sorting Algorithm with Using Petri Nets

NASA Astrophysics Data System (ADS)

Voevoda, A. A.; Romannikov, D. O.

2017-01-01

Nowadays the tasks of computations speed-up and/or their optimization are actual. Among the approaches on how to solve these tasks, a method applying approaches of parallelization and asynchronization to a sorting algorithm is considered in the paper. The sorting methods are ones of elementary methods and they are used in a huge amount of different applications. In the paper, we offer a method of an array sorting that based on a division into a set of independent adjacent pairs of numbers and their parallel and asynchronous comparison. And this one distinguishes the offered method from the traditional sorting algorithms (like quick sorting, merge sorting, insertion sorting and others). The algorithm is implemented with the use of Petri nets, like the most suitable tool for an asynchronous systems description.

IAP-Based Cell Sorting Results in Homogeneous Transplantable Dopaminergic Precursor Cells Derived from Human Pluripotent Stem Cells.

PubMed

Lehnen, Daniela; Barral, Serena; Cardoso, Tiago; Grealish, Shane; Heuer, Andreas; Smiyakin, Andrej; Kirkeby, Agnete; Kollet, Jutta; Cremer, Harold; Parmar, Malin; Bosio, Andreas; Knöbel, Sebastian

2017-10-10

Human pluripotent stem cell (hPSC)-derived mesencephalic dopaminergic (mesDA) neurons can relieve motor deficits in animal models of Parkinson's disease (PD). Clinical translation of differentiation protocols requires standardization of production procedures, and surface-marker-based cell sorting is considered instrumental for reproducible generation of defined cell products. Here, we demonstrate that integrin-associated protein (IAP) is a cell surface marker suitable for enrichment of hPSC-derived mesDA progenitor cells. Immunomagnetically sorted IAP + mesDA progenitors showed increased expression of ventral midbrain floor plate markers, lacked expression of pluripotency markers, and differentiated into mature dopaminergic (DA) neurons in vitro. Intrastriatal transplantation of IAP + cells sorted at day 16 of differentiation in a rat model of PD resulted in functional recovery. Grafts from sorted IAP + mesDA progenitors were more homogeneous in size and DA neuron density. Thus, we suggest IAP-based sorting for reproducible prospective enrichment of mesDA progenitor cells in clinical cell replacement strategies. Copyright © 2017 Miltenyi Biotec GmbH. Published by Elsevier Inc. All rights reserved.

An Aquatic Journey toward Aeolis Mons (Mount Sharp): Sedimentary Rock Evidence observed by Mars Science Laboratory

NASA Astrophysics Data System (ADS)

Gupta, Sanjeev; Edgar, Lauren; Williams, Rebecca; Rubin, David; Yingst, Aileen; Lewis, Kevin; Kocurek, Gary; Anderson, Ryan; Dromart, Gilles; Edgett, Ken; Hardgrove, Craig; Kah, Linda; Mangold, Nicolas; Milliken, Ralph; Minitti, Michelle; Palucis, Marisa; Rice, Melissa; Stack, Katie; Sumner, Dawn; Williford, Ken

2014-05-01

Since leaving Yellowknife Bay (summer 2013), Mars Science Laboratory Curiosity has investigated a number of key outcrops as it traverses along the Rapid Transit Route toward the entry point to begin its investigations of the extensive rock outcrops at the base of Mount Sharp. Rover observations are characterizing the variability of lithologies and sedimentary facies along the traverse and establishing stratigraphic relationships with the aim of reconstructing depositional processes and palaeoenvironments. Here, we report on sedimentological and stratigraphic observations based on images from the Mastcam and MAHLI instruments at Shaler and the Darwin waypoint. The informally named Shaler outcrop, which forms part of the Glenelg member of the Yellowknife Bay formation [1] is remarkable for the preservation of a rich suite of sedimentary structures and architecture, and was investigated on sols 120-121 and 309-324. The outcrop forms a pebbly sandstone body that is ~0.7 m thick and extends for up to 20 m. Shaler is largely characterized by pebbly sandstone facies showing well-developed decimeter-scale trough cross-stratification. Bedding geometries indicate sub-critical angles of climb, resulting in preservation of only the lee slope deposits. The grain size, and the presence and scale of cross-stratification imply sediment transport and deposition by unidirectional currents in a fluvial sedimentary environment. Curiosity investigated the informally named Darwin waypoint between sols 390 and 401, making detailed Mastcam and MAHLI observations at two separate locations. The Darwin outcrop comprises light-toned sandstone beds separated by darker pebbly sandstones. MAHLI observations permit differentiation of distinct sedimentary facies. The Altar Mountain facies is a poorly sorted pebbly sandstone that is rich in fine pebbles. Pebbles are sub-angular to sub-rounded in shape and show no preferred orientation or fabric. Pebbles and sand grains show clast-to-clast contacts. The clast-supported nature of the facies, the presence of coarse sand grains to fine pebbles, and the occurrence of some rounding of clasts indicates that these are sedimentary clasts that have been transported by aqueous flows. However, the absence of a well-sorted fabric, size grading of clast, and major rounding of grains suggests that these pebbly sandstones were rapidly deposited rather than built up from sustained fluvial reworking, implying that the deposits may be the result of more ephemeral river flows rather than sustained flow discharges. The Bardin Bluffs facies overlies the Altar Mountain facies and shows a more sand-dominated fabric with a smaller proportion of floating fine pebbles. This facies is also clast-supported but contains fewer pebbles and shows an overall fining-up trend. This facies is also interpreted to represent fluvial deposition albeit with a different grain size distribution than the Altar Mountains facies. We will compare and contrast the varying sedimentary fabrics and facies to develop models for the variety of aqueous fluvial transport processes that have led to the deposition of sedimentary rocks en route to Mount Sharp. The origin of these sedimentary rocks with relation to fluvial fan processes in Gale Crater will be discussed. References: [1] Grotzinger, J.P. et al Science 2013, doi: 10.1126/science.1242777.

Nanofluidic rocking Brownian motors.

PubMed

Skaug, Michael J; Schwemmer, Christian; Fringes, Stefan; Rawlings, Colin D; Knoll, Armin W

2018-03-30

Control and transport of nanoscale objects in fluids is challenging because of the unfavorable scaling of most interaction mechanisms to small length scales. We designed energy landscapes for nanoparticles by accurately shaping the geometry of a nanofluidic slit and exploiting the electrostatic interaction between like-charged particles and walls. Directed transport was performed by combining asymmetric potentials with an oscillating electric field to achieve a rocking Brownian motor. Using gold spheres 60 nanometers in diameter, we investigated the physics of the motor with high spatiotemporal resolution, enabling a parameter-free comparison with theory. We fabricated a sorting device that separates 60- and 100-nanometer particles in opposing directions within seconds. Modeling suggests that the device separates particles with a radial difference of 1 nanometer. Copyright © 2018 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works.

Field Verification Program (Aquatic Disposal). Effects of Black Rock Harbor Dredged Material on the Histopathology of The Blue Mussel Mytilus edulis and Polychaete Worm Nephtys incisa After Laboratory and Field Exposures.

DTIC Science & Technology

1987-09-01

reproductive tract from animal collected at 400E on T + 2. Photomicrograph shows normal ova, cytoplasm, and vitelline membrane ......................... 92 40...was brought to the laboratory, where it was sieved and the N. incisa were picked and sorted by size. Tests were con- ducted with adult specimens...palps, the esophagus, the stomach, the intestine and digestive diverticula ducts and tubules), the byssus organ, the muscles, and the connective

The enduring value of the Boulder model: "upon this rock we will build".

PubMed

Peterson, Christopher; Park, Nansook

2005-09-01

We comment on the article by C.R. Snyder and T.R. Elliott, "Twenty-First Century Graduate Education in Clinical Psychology: A Four Level Matrix Model" (this issue, PP. 1033-1054). We agree with many of the specific sentiments expressed by these authors but not with their dismissal of the Boulder model. We conclude that the Boulder model is as valuable today as when first articulated and that it provides a sturdy foundation upon which to make the sorts of changes the authors suggest. (c) 2005 Wiley Periodicals, Inc.

Bio optofluidics cell sorter: cell-BOCS concept and applications

NASA Astrophysics Data System (ADS)

Roth, Tue; Glückstad, Jesper

2012-03-01

The cell-BOCS is a novel microfluidics based cell-sorting instrument utilizing next generation optical trapping technology developed at the Technical University of Denmark. It is targeted emerging bio-medical research and diagnostics markets where it for certain applications offers a number of advantages over conventional fluorescence activated cell-sorting (FACSTM) technology. Advantages include gentle handling of cells, sterile sorting, easy operation, small footprint and lower cost allowing out-of-core-facility use. Application examples are found within sorting of fragile transfected cells, high value samples and primary cell lines, where traditional FACS technology has limited application due to it's droplet-based approach to cell-sorting. In the diagnostics field, in particular applying the cell-BOCS for isolating pure populations of circulating tumor cells is an area that has generated a lot of interest.

A real-time spike sorting method based on the embedded GPU.

PubMed

Zelan Yang; Kedi Xu; Xiang Tian; Shaomin Zhang; Xiaoxiang Zheng

2017-07-01

Microelectrode arrays with hundreds of channels have been widely used to acquire neuron population signals in neuroscience studies. Online spike sorting is becoming one of the most important challenges for high-throughput neural signal acquisition systems. Graphic processing unit (GPU) with high parallel computing capability might provide an alternative solution for increasing real-time computational demands on spike sorting. This study reported a method of real-time spike sorting through computing unified device architecture (CUDA) which was implemented on an embedded GPU (NVIDIA JETSON Tegra K1, TK1). The sorting approach is based on the principal component analysis (PCA) and K-means. By analyzing the parallelism of each process, the method was further optimized in the thread memory model of GPU. Our results showed that the GPU-based classifier on TK1 is 37.92 times faster than the MATLAB-based classifier on PC while their accuracies were the same with each other. The high-performance computing features of embedded GPU demonstrated in our studies suggested that the embedded GPU provide a promising platform for the real-time neural signal processing.

Particle Transport and Size Sorting in Bubble Microstreaming Flow

NASA Astrophysics Data System (ADS)

Thameem, Raqeeb; Rallabandi, Bhargav; Wang, Cheng; Hilgenfeldt, Sascha

2014-11-01

Ultrasonic driving of sessile semicylindrical bubbles results in powerful steady streaming flows that are robust over a wide range of driving frequencies. In a microchannel, this flow field pattern can be fine-tuned to achieve size-sensitive sorting and trapping of particles at scales much smaller than the bubble itself; the sorting mechanism has been successfully described based on simple geometrical considerations. We investigate the sorting process in more detail, both experimentally (using new parameter variations that allow greater control over the sorting) and theoretically (incorporating the device geometry as well as the superimposed channel flow into an asymptotic theory). This results in optimized criteria for size sorting and a theoretical description that closely matches the particle behavior close to the bubble, the crucial region for size sorting.

What does it take to turn a rock into a badlands material?

NASA Astrophysics Data System (ADS)

Kasanin-Grubin, Milica; Nadal Romero, Estela; Della Seta, Marta; Martinez-Murillo, Juan F.

2016-04-01

Badlands can develop under different climatic conditions ranging from arid to humid on materials that have a complex combination of physico-chemical properties. The aim of this study is to determine the critical material properties for badland development based on current knowledge and new data. For that purpose we analyzed, both using the existing and new data, the importance of the distribution of grain size, mineralogical composition, and physico-chemical properties. Generally, the badland materials are most commonly described as "fine - grained" however, the size of the dominant grain fractions is not the solely important parameter. We argue that there is a critical amount of each size fraction (sand, silt and clay) that makes these materials susceptible to erosion. Furthermore, sorting of the material is an important factor in material susceptibility to erosion. The well-sorted fine sediments are generally considered as materials prone to disintegration and piping, while sediments with a large range of sizes and higher degree of packing are more resistant. However, poorly sorted sediments can also be very erodible and are found in badlands. Besides quartz, feldspar and carbonates, clay minerals are always present in badland materials and these minerals are crucial for badland development.The dominant clay mineral determines the behaviour of badland material, regarding swelling/shrinking, dispersion and crust development. Previous studies have shown that pH, SAR (sodium adsorption ratio), TDS (total dissolved salts), PS (percentage of sodium) and ESP (exchangeable sodium percentage) are distinctive parameters for both eroded and non-eroded slopes in badlands. Furthermore, our findings prove that content of organic carbon (Corg) is also a very important parameter and that materials with high SAR are less dispersive if the Corg is above 3%. In conclusion, this study shows that there are a number of thresholds regarding grain size, mineralogical composition and physico-chemical parameters that have to be met to make sediment a badland material.

The lithostratigraphy of a marine kame delta-outwash fan complex at Pease AFB, Newington, NH

DOE Office of Scientific and Technical Information (OSTI.GOV)

Dineen, R.J.; Manning, S.; McGeehan, K.

The overburden stratigraphy at Pease AFB is based on over 1,200 wells, borings, piezometers, and test pits, and includes five lithologic units: Fill, Upper Sand (US), Marine Clay and Silt (MCS), Lower Sand (LS), and Till (GT). The US is a yellow brown, poorly sorted sand to silty sand and is massive to laminated, and locally has hummocky bedding. The MCS (the Presumpscot Formation) is a dark gray, massive to laminated sandy to silty clay, and is locally interbedded with silty sand. The MCS contains a trace of organic matter, primarily as fine particles of peat. The LS is amore » gray to brown, poorly sorted, silty sand to gravelly sand that is massive to planar bedded and locally grades down into GT and/or upward into MCS. The GT consists of a massive to crudely bedded dark gray to dark brown, very poorly sorted, sandy silt to gravelly, silty sand. The US, MCS, LS and upper part of the GT were deposited in a marine environment at or near the ice margin. Pease AFB is built on two large fans of gravelly sand (LS plus US) that are bordered to the east by NW-SE till ridges (drumlins ). The northern-most fan is flat-topped with a surface elevation of 30 m ASL. The southern fan is more hummocky, with a surface elevation of 18.5 m ASL. Both fans coarsen towards the NW, and are interbedded with MCS towards the SE. The apices of the fans overlie deeply-scoured troughs in the rock surface. The fans are interpreted to be kame deltas or submarine outwash fans that are deposited along the retreating Wisconsinan ice margin by concentrated meltwater flow. Later, the US may have been deposited by marine shoreface erosion of the emergent fans as the ice front retreated and sea level fell.« less

Composition of conglomerates analyzed by the Curiosity rover: Implications for Gale Crater crust and sediment sources

DOE PAGES

Mangold, N.; Thompson, L. M.; Forni, O.; ...

2016-03-16

The Curiosity rover has analyzed various detrital sedimentary rocks at Gale Crater, among which fluvial and lacustrine rocks are predominant. Conglomerates correspond both to the coarsest sediments analyzed and the least modified by chemical alteration, enabling us to link their chemistry to that of source rocks on the Gale Crater rims. Here, we report the results of six conglomerate targets analyzed by Alpha-Particle X-ray Spectrometer and 40 analyzed by ChemCam. The bulk chemistry derived by both instruments suggests two distinct end-members for the conglomerate compositions. The first group (Darwin type) is typical of conglomerates analyzed before sol 540; it hasmore » a felsic alkali-rich composition, with a Na 2O/K 2O > 5. The second group (Kimberley type) is typical of conglomerates analyzed between sols 540 and 670 in the vicinity of the Kimberley waypoint; it has an alkali-rich potassic composition with Na 2O/K 2O < 2. The variety of chemistry and igneous textures (when identifiable) of individual clasts suggest that each conglomerate type is a mixture of multiple source rocks. Conglomerate compositions are in agreement with most of the felsic alkali-rich float rock compositions analyzed in the hummocky plains. The average composition of conglomerates can be taken as a proxy of the average igneous crust composition at Gale Crater. Finally, the differences between the composition of conglomerates and that of finer-grained detrital sediments analyzed by the rover suggest modifications by diagenetic processes (especially for Mg enrichments in fine-grained rocks), physical sorting, and mixing with finer-grained material of different composition.« less

Quaternary alluvial deposits of Wadi Gaza in the middle of the Gaza Strip (Palestine): Facies, granulometric characteristics, and their paleoflow direction

NASA Astrophysics Data System (ADS)

Ubeid, Khalid Fathi

2016-06-01

The Quaternary rocks of the Gaza Strip mainly consist of clastic sedimentary rocks. In Wadi Gaza, the outcropping rocks consist of brownish fine-grained deposits, sandstones, and conglomerates. The deposits have been studied from a genetic point of view, and six facies have been described: (i) graded clast-supported conglomerates, (ii) cross-bedded clast-supported conglomerates, (iii) sandy matrix conglomerates, (iv) cross-laminated medium-grained sandstones, (v) graded coarse-grained sandstones, and (vi) massive sandstones. The field work observations and granulometric analysis show that the sphericity of the grains increase toward the west, where its value ranges from ∼0.64 in the east to ∼0.70 in the west. In addition, the grain forms tend to be disc shape in the east, whereas they tend to be disc-to spheroid shape in the west, and they become well rounded to well sorted toward the west. Moreover, the features, geometry, and spatial relationship among these facies suggest that the Wadi Gaza was meandering wadi fed from Beir Sheva and the Northern Negev in the southeast of Gaza Strip through Wadi Al Shallala and Wadi Sheneq and from Hebron mountains in the West Bank at the east through Wadi Al Shari'a alluvials. Within the Gaza Strip, paleocurrent data ranges from 210° to 310°, indicating a mean a paleoflow direction to the W (276°) and a median value about 275°. The sedimentary rocks in the Wadi Gaza are considered to be deposited in two periods of climate conditions: the coarse-grained rocks were deposited during the period of wet condition before 12.4 ka age, whereas the eolinite fine-grained rocks were deposited during semiarid climate conditions which are younger in age than 12.4 ka.

One-step fabrication of 3D silver paste electrodes into microfluidic devices for enhanced droplet-based cell sorting

NASA Astrophysics Data System (ADS)

Rao, Lang; Cai, Bo; Yu, Xiao-Lei; Guo, Shi-Shang; Liu, Wei; Zhao, Xing-Zhong

2015-05-01

3D microelectrodes are one-step fabricated into a microfluidic droplet separator by filling conductive silver paste into PDMS microchambers. The advantages of 3D silver paste electrodes in promoting droplet sorting accuracy are systematically demonstrated by theoretical calculation, numerical simulation and experimental validation. The employment of 3D electrodes also helps to decrease the droplet sorting voltage, guaranteeing that cells encapsulated in droplets undergo chip-based sorting processes are at better metabolic status for further potential cellular assays. At last, target droplet containing single cell are selectively sorted out from others by an appropriate electric pulse. This method provides a simple and inexpensive alternative to fabricate 3D electrodes, and it is expected our 3D electrode-integrated microfluidic droplet separator platform can be widely used in single cell operation and analysis.

Unsupervised neural spike sorting for high-density microelectrode arrays with convolutive independent component analysis.

PubMed

Leibig, Christian; Wachtler, Thomas; Zeck, Günther

2016-09-15

Unsupervised identification of action potentials in multi-channel extracellular recordings, in particular from high-density microelectrode arrays with thousands of sensors, is an unresolved problem. While independent component analysis (ICA) achieves rapid unsupervised sorting, it ignores the convolutive structure of extracellular data, thus limiting the unmixing to a subset of neurons. Here we present a spike sorting algorithm based on convolutive ICA (cICA) to retrieve a larger number of accurately sorted neurons than with instantaneous ICA while accounting for signal overlaps. Spike sorting was applied to datasets with varying signal-to-noise ratios (SNR: 3-12) and 27% spike overlaps, sampled at either 11.5 or 23kHz on 4365 electrodes. We demonstrate how the instantaneity assumption in ICA-based algorithms has to be relaxed in order to improve the spike sorting performance for high-density microelectrode array recordings. Reformulating the convolutive mixture as an instantaneous mixture by modeling several delayed samples jointly is necessary to increase signal-to-noise ratio. Our results emphasize that different cICA algorithms are not equivalent. Spike sorting performance was assessed with ground-truth data generated from experimentally derived templates. The presented spike sorter was able to extract ≈90% of the true spike trains with an error rate below 2%. It was superior to two alternative (c)ICA methods (≈80% accurately sorted neurons) and comparable to a supervised sorting. Our new algorithm represents a fast solution to overcome the current bottleneck in spike sorting of large datasets generated by simultaneous recording with thousands of electrodes. Copyright © 2016 Elsevier B.V. All rights reserved.

Subaqueous volcanism in the Etnean area: evidence for hydromagmatic activity and regional uplift inferred from the Castle Rock of Acicastello

NASA Astrophysics Data System (ADS)

Corsaro, R. A.; Cristofolini, R.

2000-01-01

The subalkaline rocks outcropping at the Acicastello Castle Rock, Catania, Sicily, and on its abrasion platforms, are related to the oldest Etnean volcanism (500-300 ka; [Gillot, P.Y., Kieffer, G., Romano, R., 1994. The evolution of Mount Etna in the light of potassium-argon dating. Acta Vulcanol. 5, 81-87.]). Here, submarine lavas with pillows closely packed onto each other are associated with heterogeneous and poorly sorted volcaniclastic breccia levels with sub-vertical sharp boundaries. The present-day attitude was previously interpreted as due to a local tilt [Di Re, M., 1963. Hyaloclastites and pillow-lavas of Acicastello (Mt. Etna). Bull. Volcanol. 25, 281-284.; Kieffer, G., 1985. Evolution structurale et dynamique d'un grand volcan polygenique: stades d'edification et activitè actuelle de l'Etna (Sicile). Clermont Ferrand IIDoctorat Etat Tesi, Clermont Ferrand II.], or to the seaward sliding of the entire eastern Etnean flank [Borgia, A., Ferrari, L., Pasquarè, G., 1992. Importance of gravitational spreading in the tectonic and volcanic evolution of Mount Etna. Nature 357, 231-235.], on the assumption of originally horizontal boundaries. On the contrary, our observations do not match the hypothesis of a significantly tilted succession and lead us to conclude that, apart from the strong regional uplift, the present Castle Rock exposure did not suffer any substantial change of its attitude.

Exploring caves: teaching packet for grades K-3

USGS Publications Warehouse

,

1998-01-01

"Exploring Caves" is an interdisciplinary set of materials on caves for grades K-3. Caves entail at least five scientific disciplines: earth science, hydrology, mapping, biology, and anthropology. Each of these disciplines involves a unique content area as well as the development of particular intellectual skills. This unit aims at helping teachers to sort and organize the most important ideas in this rich scientific area. Detailed lesson plans serve as ways to pass these ideas on to very young students. Most American caves are big holes that form in limestone rock. The holes begin as cracks in limestone. The cracks get bigger and bigger. They grow into underground streams, rivers, and even lakes. When water drains away, the waterways turn into open cave tunnels, passages, and caverns. It takes 10,000 to 100,000 years to form a cave big enough for people to move around inside. Water drips constantly in caves. The drips dissolve limestone minerals in one part of the cave. As water dries out, the minerals build up in other places. In this way, beautiful cave rock formations and crystals grow over thousands of years. These rock formations change dark limestone caves into hidden fantasy lands.

Statistical Characteristics of Single Sort of Grape Bulgarian Wines

NASA Astrophysics Data System (ADS)

Boyadzhiev, D.

2008-10-01

The aim of this paper is to evaluate the differences in the values of the 8 basic physicochemical indices of single sort of grape Bulgarian wines (white and red ones), obligatory for the standardization of ready production in the winery. Statistically significant differences in the values of various sorts and vintages are established and possibilities for identifying the sort and the vintage on the base of these indices by applying discriminant analysis are discussed.

Advances in the simulation and automated measurement of well-sorted granular material: 1. Simulation

USGS Publications Warehouse

Daniel Buscombe,; Rubin, David M.

2012-01-01

1. In this, the first of a pair of papers which address the simulation and automated measurement of well-sorted natural granular material, a method is presented for simulation of two-phase (solid, void) assemblages of discrete non-cohesive particles. The purpose is to have a flexible, yet computationally and theoretically simple, suite of tools with well constrained and well known statistical properties, in order to simulate realistic granular material as a discrete element model with realistic size and shape distributions, for a variety of purposes. The stochastic modeling framework is based on three-dimensional tessellations with variable degrees of order in particle-packing arrangement. Examples of sediments with a variety of particle size distributions and spatial variability in grain size are presented. The relationship between particle shape and porosity conforms to published data. The immediate application is testing new algorithms for automated measurements of particle properties (mean and standard deviation of particle sizes, and apparent porosity) from images of natural sediment, as detailed in the second of this pair of papers. The model could also prove useful for simulating specific depositional structures found in natural sediments, the result of physical alterations to packing and grain fabric, using discrete particle flow models. While the principal focus here is on naturally occurring sediment and sedimentary rock, the methods presented might also be useful for simulations of similar granular or cellular material encountered in engineering, industrial and life sciences.

Trace element and Nd, Sr, Pb isotope geochemistry of Kilauea Volcano, Hawai'i, near-vent eruptive products: 1983-2001

USGS Publications Warehouse

Thornber, Carl R.; Budahn, James R.; Ridley, W. Ian; Unruh, Daniel M.

2003-01-01

This open-file report serves as a repository for geochemical data referred to in U.S. Geological Survey Professional Paper 1676 (Heliker, Swanson, and Takahashi, eds., 2003), which includes multidisciplinary research papers pertaining to the first twenty years of Puu Oo Kupaianaha eruption activity. Details of eruption characteristics and nomenclature are provided in the introductory chapter of that volume (Heliker and Mattox, 2003). Geochemical relations of this data are depicted and interpreted by Thornber (2003), Thornber and others (2003a) and Thornber (2001). This report supplements Thornber and others (2003b) in which whole-rock and glass major-element data on ~1000 near-vent lava samples collected during the 1983 to 2001 eruptive interval of Kilauea Volcano, Hawai'i, are presented. Herein, we present whole-rock trace element compositions of 85 representative samples collected from January 1983 to May 2001; glass trace-element compositions of 39 Pele’s Tear (tephra) samples collected from September 1995 to September 1996, and whole-rock Nd, Sr and Pb isotopic analyses of 10 representative samples collected from September 1983 to September 1993. Thornber and others (2003b) provide a specific record of sample characteristics, location, etc., for each of the samples reported here. Spreadsheets of both reports may be integrated and sorted based upon time of formation or sample numbers. General information pertaining to the selectivity and petrologic significance of this sample suite is presented by Thornber and others (2003b). As justified in that report, this select suite of time-constrained geochemical data is suitable for constructing petrologic models of pre-eruptive magmatic processes associated with prolonged rift zone eruption of Hawaiian shield volcanoes.

Tephra Blanket Record of a Violent Strombolian Eruption, Sunset Crater, Arizona

NASA Astrophysics Data System (ADS)

Wagner, K. D.; Ort, M. H.

2015-12-01

New fieldwork provides a detailed description of the widespread tephra of the ~1085 CE Sunset Crater eruption in the San Francisco Volcanic Field, Arizona, and refines interpretation of the eruptive sequence. The basal fine-lapilli tephra-fall-units I-IV are considered in detail. Units I and II are massive, with Unit I composed of angular to spiny clasts and II composed of more equant, oxidized clasts. Units III and IV have inversely graded bases and massive tops and are composed of angular to spiny iridescent and mixed iridescent and oxidized angular clasts, respectively. Xenoliths are rare in all units (<0.1%): sedimentary xenoliths are consistent with the known shallow country rock (Moenkopi and Kaibab Fms); magmatic xenoliths are pumiceous rhyolite mingled with basalt. Unit II is less sideromelane rich (20%) than Units I, III, and IV (60-80%). Above these units are at least two more coarse tephra-fall units. Variably preserved ash and fine-lapilli laminae cap the tephra blanket. This deposit is highly susceptible to reworking, and likely experienced both syn- and post-eruptive aeolian redistribution. It appears as either well sorted, alternating planar-parallel beds of ash and fine lapilli with rare wavy beds, or as cross- or planar-bedded ash. The tephra blanket as a whole is stratigraphically underlain by a fissure-fed lava flow and lapilli-fall units are intercalated with two larger flows. Mean grain size is coarsest in Unit I but coarsens in Units II-IV. Units I, III, and IV are moderately to poorly sorted with no skew. Unit II is better sorted and more coarse-skewed. Units I and III are slightly more platykurtic than II and IV. Without considering possible spatial effects introduced by dispersion patterns, bootstrap ANOVA confidence intervals suggest at least Unit II sorting and skewness are from distinct populations. Isopachs indicate Units I and II were associated with a 10-km-long fissure source. After or during Unit II's deposition, activity localized to Sunset Crater. Units III and IV were emplaced with waxing to sustained activity, and followed by at least two more sustained episodes. Two lava flows began effusing from the cone during this period and remained active after explosive activity ceased. Primary tephra deposition ended with a period of small discrete explosions.

Application of Raman spectroscopy to identification and sorting of post-consumer plastics for recycling

DOEpatents

Sommer, Edward J.; Rich, John T.

2001-01-01

A high accuracy rapid system for sorting a plurality of waste products by polymer type. The invention involves the application of Raman spectroscopy and complex identification techniques to identify and sort post-consumer plastics for recycling. The invention reads information unique to the molecular structure of the materials to be sorted to identify their chemical compositions and uses rapid high volume sorting techniques to sort them into product streams at commercially viable throughput rates. The system employs a laser diode (20) for irradiating the material sample (10), a spectrograph (50) is used to determine the Raman spectrum of the material sample (10) and a microprocessor based controller (70) is employed to identify the polymer type of the material sample (10).

Droplet sorting based on the number of encapsulated particles using a solenoid valve.

PubMed

Cao, Zhenning; Chen, Fangyuan; Bao, Ning; He, Huacheng; Xu, Peisheng; Jana, Saikat; Jung, Sunghwan; Lian, Hongzhen; Lu, Chang

2013-01-07

Droplet microfluidics provides a high-throughput platform for screening subjects and conditions involved in biology. Droplets with encapsulated beads and cells have been increasingly used for studying molecular and cellular biology. Droplet sorting is needed to isolate and analyze the subject of interest during such screening. The vast majority of current sorting techniques use fluorescence intensity emitted by each droplet as the only criterion. However, due to the randomness and imperfections in the encapsulation process, typically a mixed population of droplets with an uneven number of encapsulated particles results and is used for screening. Thus droplet sorting based on the number of encapsulated particles becomes necessary for isolating or enriching droplets with a specific occupancy. In this work, we developed a fluorescence-activated microfluidic droplet sorter that integrated a simple deflection mechanism based on the use of a solenoid valve and a sophisticated signal processing system with a microcontroller as the core. By passing droplets through a narrow interrogation channel, the encapsulated particles were detected individually. The microcontroller conducted the computation to determine the number of encapsulated particles in each droplet and made the sorting decision accordingly that led to actuation of the solenoid valve. We tested both fluorescent beads and stained cells and our results showed high efficiency and accuracy for sorting and enrichment.

Diagnostic reliability of MMPI-2 computer-based test interpretations.

PubMed

Pant, Hina; McCabe, Brian J; Deskovitz, Mark A; Weed, Nathan C; Williams, John E

2014-09-01

Reflecting the common use of the MMPI-2 to provide diagnostic considerations, computer-based test interpretations (CBTIs) also typically offer diagnostic suggestions. However, these diagnostic suggestions can sometimes be shown to vary widely across different CBTI programs even for identical MMPI-2 profiles. The present study evaluated the diagnostic reliability of 6 commercially available CBTIs using a 20-item Q-sort task developed for this study. Four raters each sorted diagnostic classifications based on these 6 CBTI reports for 20 MMPI-2 profiles. Two questions were addressed. First, do users of CBTIs understand the diagnostic information contained within the reports similarly? Overall, diagnostic sorts of the CBTIs showed moderate inter-interpreter diagnostic reliability (mean r = .56), with sorts for the 1/2/3 profile showing the highest inter-interpreter diagnostic reliability (mean r = .67). Second, do different CBTIs programs vary with respect to diagnostic suggestions? It was found that diagnostic sorts of the CBTIs had a mean inter-CBTI diagnostic reliability of r = .56, indicating moderate but not strong agreement across CBTIs in terms of diagnostic suggestions. The strongest inter-CBTI diagnostic agreement was found for sorts of the 1/2/3 profile CBTIs (mean r = .71). Limitations and future directions are discussed. PsycINFO Database Record (c) 2014 APA, all rights reserved.

Surface acoustic wave actuated cell sorting (SAWACS).

PubMed

Franke, T; Braunmüller, S; Schmid, L; Wixforth, A; Weitz, D A

2010-03-21

We describe a novel microfluidic cell sorter which operates in continuous flow at high sorting rates. The device is based on a surface acoustic wave cell-sorting scheme and combines many advantages of fluorescence activated cell sorting (FACS) and fluorescence activated droplet sorting (FADS) in microfluidic channels. It is fully integrated on a PDMS device, and allows fast electronic control of cell diversion. We direct cells by acoustic streaming excited by a surface acoustic wave which deflects the fluid independently of the contrast in material properties of deflected objects and the continuous phase; thus the device underlying principle works without additional enhancement of the sorting by prior labelling of the cells with responsive markers such as magnetic or polarizable beads. Single cells are sorted directly from bulk media at rates as fast as several kHz without prior encapsulation into liquid droplet compartments as in traditional FACS. We have successfully directed HaCaT cells (human keratinocytes), fibroblasts from mice and MV3 melanoma cells. The low shear forces of this sorting method ensure that cells survive after sorting.

Phenotypic and functional characterization of earthworm coelomocyte subsets: Linking light scatter-based cell typing and imaging of the sorted populations.

PubMed

Engelmann, Péter; Hayashi, Yuya; Bodó, Kornélia; Ernszt, Dávid; Somogyi, Ildikó; Steib, Anita; Orbán, József; Pollák, Edit; Nyitrai, Miklós; Németh, Péter; Molnár, László

2016-12-01

Flow cytometry is a common approach to study invertebrate immune cells including earthworm coelomocytes. However, the link between light-scatter- and microscopy-based phenotyping remains obscured. Here we show, by means of light scatter-based cell sorting, both subpopulations (amoebocytes and eleocytes) can be physically isolated with good sort efficiency and purity confirmed by downstream morphological and cytochemical applications. Immunocytochemical analysis using anti-EFCC monoclonal antibodies combined with phalloidin staining has revealed antigenically distinct, sorted subsets. Screening of lectin binding capacity indicated wheat germ agglutinin (WGA) as the strongest reactor to amoebocytes. This is further evidenced by WGA inhibition assays that suggest high abundance of N-acetyl-d-glucosamine in amoebocytes. Post-sort phagocytosis assays confirmed the functional differences between amoebocytes and eleocytes, with the former being in favor of bacterial engulfment. This study has proved successful in linking flow cytometry and microscopy analysis and provides further experimental evidence of phenotypic and functional heterogeneity in earthworm coelomocyte subsets. Copyright © 2016 Elsevier Ltd. All rights reserved.

MetaSort untangles metagenome assembly by reducing microbial community complexity

PubMed Central

Ji, Peifeng; Zhang, Yanming; Wang, Jinfeng; Zhao, Fangqing

2017-01-01

Most current approaches to analyse metagenomic data rely on reference genomes. Novel microbial communities extend far beyond the coverage of reference databases and de novo metagenome assembly from complex microbial communities remains a great challenge. Here we present a novel experimental and bioinformatic framework, metaSort, for effective construction of bacterial genomes from metagenomic samples. MetaSort provides a sorted mini-metagenome approach based on flow cytometry and single-cell sequencing methodologies, and employs new computational algorithms to efficiently recover high-quality genomes from the sorted mini-metagenome by the complementary of the original metagenome. Through extensive evaluations, we demonstrated that metaSort has an excellent and unbiased performance on genome recovery and assembly. Furthermore, we applied metaSort to an unexplored microflora colonized on the surface of marine kelp and successfully recovered 75 high-quality genomes at one time. This approach will greatly improve access to microbial genomes from complex or novel communities. PMID:28112173

Reduction of irregular breathing artifacts in respiration-correlated CT images using a respiratory motion model.

PubMed

Hertanto, Agung; Zhang, Qinghui; Hu, Yu-Chi; Dzyubak, Oleksandr; Rimner, Andreas; Mageras, Gig S

2012-06-01

Respiration-correlated CT (RCCT) images produced with commonly used phase-based sorting of CT slices often exhibit discontinuity artifacts between CT slices, caused by cycle-to-cycle amplitude variations in respiration. Sorting based on the displacement of the respiratory signal yields slices at more consistent respiratory motion states and hence reduces artifacts, but missing image data (gaps) may occur. The authors report on the application of a respiratory motion model to produce an RCCT image set with reduced artifacts and without missing data. Input data consist of CT slices from a cine CT scan acquired while recording respiration by monitoring abdominal displacement. The model-based generation of RCCT images consists of four processing steps: (1) displacement-based sorting of CT slices to form volume images at 10 motion states over the cycle; (2) selection of a reference image without gaps and deformable registration between the reference image and each of the remaining images; (3) generation of the motion model by applying a principal component analysis to establish a relationship between displacement field and respiration signal at each motion state; (4) application of the motion model to deform the reference image into images at the 9 other motion states. Deformable image registration uses a modified fast free-form algorithm that excludes zero-intensity voxels, caused by missing data, from the image similarity term in the minimization function. In each iteration of the minimization, the displacement field in the gap regions is linearly interpolated from nearest neighbor nonzero intensity slices. Evaluation of the model-based RCCT examines three types of image sets: cine scans of a physical phantom programmed to move according to a patient respiratory signal, NURBS-based cardiac torso (NCAT) software phantom, and patient thoracic scans. Comparison in physical motion phantom shows that object distortion caused by variable motion amplitude in phase-based sorting is visibly reduced with model-based RCCT. Comparison of model-based RCCT to original NCAT images as ground truth shows best agreement at motion states whose displacement-sorted images have no missing slices, with mean and maximum discrepancies in lung of 1 and 3 mm, respectively. Larger discrepancies correlate with motion states having a larger number of missing slices in the displacement-sorted images. Artifacts in patient images at different motion states are also reduced. Comparison with displacement-sorted patient images as a ground truth shows that the model-based images closely reproduce the ground truth geometry at different motion states. Results in phantom and patient images indicate that the proposed method can produce RCCT image sets with reduced artifacts relative to phase-sorted images, without the gaps inherent in displacement-sorted images. The method requires a reference image at one motion state that has no missing data. Highly irregular breathing patterns can affect the method's performance, by introducing artifacts in the reference image (although reduced relative to phase-sorted images), or in decreased accuracy in the image prediction of motion states containing large regions of missing data. © 2012 American Association of Physicists in Medicine.

BayesMotif: de novo protein sorting motif discovery from impure datasets.

PubMed

Hu, Jianjun; Zhang, Fan

2010-01-18

Protein sorting is the process that newly synthesized proteins are transported to their target locations within or outside of the cell. This process is precisely regulated by protein sorting signals in different forms. A major category of sorting signals are amino acid sub-sequences usually located at the N-terminals or C-terminals of protein sequences. Genome-wide experimental identification of protein sorting signals is extremely time-consuming and costly. Effective computational algorithms for de novo discovery of protein sorting signals is needed to improve the understanding of protein sorting mechanisms. We formulated the protein sorting motif discovery problem as a classification problem and proposed a Bayesian classifier based algorithm (BayesMotif) for de novo identification of a common type of protein sorting motifs in which a highly conserved anchor is present along with a less conserved motif regions. A false positive removal procedure is developed to iteratively remove sequences that are unlikely to contain true motifs so that the algorithm can identify motifs from impure input sequences. Experiments on both implanted motif datasets and real-world datasets showed that the enhanced BayesMotif algorithm can identify anchored sorting motifs from pure or impure protein sequence dataset. It also shows that the false positive removal procedure can help to identify true motifs even when there is only 20% of the input sequences containing true motif instances. We proposed BayesMotif, a novel Bayesian classification based algorithm for de novo discovery of a special category of anchored protein sorting motifs from impure datasets. Compared to conventional motif discovery algorithms such as MEME, our algorithm can find less-conserved motifs with short highly conserved anchors. Our algorithm also has the advantage of easy incorporation of additional meta-sequence features such as hydrophobicity or charge of the motifs which may help to overcome the limitations of PWM (position weight matrix) motif model.

Corner detection and sorting method based on improved Harris algorithm in camera calibration

NASA Astrophysics Data System (ADS)

Xiao, Ying; Wang, Yonghong; Dan, Xizuo; Huang, Anqi; Hu, Yue; Yang, Lianxiang

2016-11-01

In traditional Harris corner detection algorithm, the appropriate threshold which is used to eliminate false corners is selected manually. In order to detect corners automatically, an improved algorithm which combines Harris and circular boundary theory of corners is proposed in this paper. After detecting accurate corner coordinates by using Harris algorithm and Forstner algorithm, false corners within chessboard pattern of the calibration plate can be eliminated automatically by using circular boundary theory. Moreover, a corner sorting method based on an improved calibration plate is proposed to eliminate false background corners and sort remaining corners in order. Experiment results show that the proposed algorithms can eliminate all false corners and sort remaining corners correctly and automatically.

Glass microsphere lubrication

NASA Technical Reports Server (NTRS)

Geiger, Michelle; Goode, Henry; Ohanlon, Sean; Pieloch, Stuart; Sorrells, Cindy; Willette, Chris

1991-01-01

The harsh lunar environment eliminated the consideration of most lubricants used on earth. Considering that the majority of the surface of the moon consists of sand, the elements that make up this mixture were analyzed. According to previous space missions, a large portion of the moon's surface is made up of fine grained crystalline rock, about 0.02 to 0.05 mm in size. These fine grained particles can be divided into four groups: lunar rock fragments, glasses, agglutinates (rock particles, crystals, or glasses), and fragments of meteorite material (rare). Analysis of the soil obtained from the missions has given chemical compositions of its materials. It is about 53 to 63 percent oxygen, 16 to 22 percent silicon, 10 to 16 percent sulfur, 5 to 9 percent aluminum, and has lesser amounts of magnesium, carbon, and sodium. To be self-supporting, the lubricant must utilize one or more of the above elements. Considering that the element must be easy to extract and readily manipulated, silicon or glass was the most logical choice. Being a ceramic, glass has a high strength and excellent resistance to temperature. The glass would also not contaminate the environment as it comes directly from it. If sand entered a bearing lubricated with grease, the lubricant would eventually fail and the shaft would bind, causing damage to the system. In a bearing lubricated with a solid glass lubricant, sand would be ground up and have little effect on the system. The next issue was what shape to form the glass in. Solid glass spheres was the only logical choice. The strength of the glass and its endurance would be optimal in this form. To behave as an effective lubricant, the diameter of the spheres would have to be very small, on the order of hundreds of microns or less. This would allow smaller clearances between the bearing and the shaft, and less material would be needed. The production of glass microspheres was divided into two parts, production and sorting. Production includes the manufacturing of the microspheres, while sorting entails deciphering the good microspheres from the bad ones. Each process is discussed in detail.

Relationships between electrical properties and petrography of El-Maghara sandstone formations, Egypt

NASA Astrophysics Data System (ADS)

Kassab, Mohamed A.; Gomaa, Mohamed M.; Lala, Amir M. S.

2017-06-01

Realization of electrical and petrography of rocks is absolutely necessary for geophysical investigations. The petrographical, petrophysical and electrical properties of sandstone rocks (El-Maghara Formation, North Sinai, Egypt) will be discussed in the present work. The goal of this paper was to highlight interrelations between electrical properties in terms of frequency (conductivity, permittivity and impedance) and petrography, as well as mineral composition. Electrical properties including (conductivity and dielectric constant) were measured at room temperature and humidity of (∼35%). The frequency range used will be from 10 Hz to 100 kHz. Slight changes between samples in electrical properties were found to result from changes in composition and texture. Electrical properties generally change with grain size, shape, sorting, mineralogy and mineral composition. The dielectric constant decreases with frequency and increases with increasing clay content. The conductivity increases with the increase in conductor channels among electrodes. Many parameters can combine together to lead to the same electrical properties. The samples are mainly composed of sand with clay and carbonate.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Beer, Neil Reginald; Lee, Abraham; Hatch, Andrew

A non-contact system for sorting monodisperse water-in-oil emulsion droplets in a microfluidic device based on the droplet's contents and their interaction with an applied electromagnetic field or by identification and sorting.

Modern sedimentary facies, depositional environments, and major controlling processes on an arid siliciclastic coast, Al qahmah, SE Red Sea, Saudi Arabia

NASA Astrophysics Data System (ADS)

Nabhan, Abdullah I.; Yang, Wan

2018-04-01

The facies and environments along the arid siliciclastic coast of Red Sea in Al Qahmah, Saudi Arabia are studied to establish a depositional model for interpretation of ancient rocks deposited in rift settings. Field and petrographic studies of 151 sediment samples in an area of 20 km2 define seven main facies types: beach, washover fan, tidal channel, dune, sabkha, delta, and wadi (seasonal stream). The wadi and delta facies are composed of poorly to moderately well-sorted, gravelly, medium-to-fine sands. Delta-front sands are redistributed by southward longshore currents to form a beach. Beach facies is composed of well-to-moderately sorted fine sands with minor gravels, which contain high concentrations of magnetite, ilmenite, garnet, pyroxene, amphibole, epidote, titanite, and apatite grains, indicating strong winnowing. Crabs and other burrowers destroy primary sedimentary structures and mix sediments in foreshore and backshore of the beaches. Wind and storm surge rework foreshore and backshore sediments to form washover fans. Sabkha facies occurs extensively in supratidal depressions behind beach, are flooded by rainstorms and spring tide, and capped by a 5-cm-thick crust composed of interlaminated halite, quartz, albite, minor gypsum and biotite, and rarely calcium carbonate. Halite occurs as thin sheets and gypsum as nodules with a chicken-wire structure. Clastic fraction in sabkha sediments ranges from coarse silt to coarse sand with moderate sorting, and is transported by currents and wind. Tidal inlets and tidal creeks assume abandoned wadis and are filled by muddy sand. Sand dunes and sand sheets are 1-7 m high and widely distributed due to variable wind directions. Fine-grained dune sands are moderately well sorted, whereas sheet sands are coarser and poorly sorted due to vegetation baffling. Most eolian sands are sourced from beach deposits. This suite of complex riverine, wave, tidal, wind, chemical, and biological processes form the facies mosaic along the arid Al Qahmah coast, which is strongly affected by climate-driven evaporation and wind action.

After site selection and before data analysis: sampling, sorting, and laboratory procedures used in stream benthic macroinvertebrate monitoring programs by USA state agencies

USGS Publications Warehouse

Carter, James L.; Resh, Vincent H.

2001-01-01

A survey of methods used by US state agencies for collecting and processing benthic macroinvertebrate samples from streams was conducted by questionnaire; 90 responses were received and used to describe trends in methods. The responses represented an estimated 13,000-15,000 samples collected and processed per year. Kicknet devices were used in 64.5% of the methods; other sampling devices included fixed-area samplers (Surber and Hess), artificial substrates (Hester-Dendy and rock baskets), grabs, and dipnets. Regional differences existed, e.g., the 1-m kicknet was used more often in the eastern US than in the western US. Mesh sizes varied among programs but 80.2% of the methods used a mesh size between 500 and 600 (mu or u)m. Mesh size variations within US Environmental Protection Agency regions were large, with size differences ranging from 100 to 700 (mu or u)m. Most samples collected were composites; the mean area sampled was 1.7 m2. Samples rarely were collected using a random method (4.7%); most samples (70.6%) were collected using "expert opinion", which may make data obtained operator-specific. Only 26.3% of the methods sorted all the organisms from a sample; the remainder subsampled in the laboratory. The most common method of subsampling was to remove 100 organisms (range = 100-550). The magnification used for sorting ranged from 1 (sorting by eye) to 30x, which results in inconsistent separation of macroinvertebrates from detritus. In addition to subsampling, 53% of the methods sorted large/rare organisms from a sample. The taxonomic level used for identifying organisms varied among taxa; Ephemeroptera, Plecoptera, and Trichoptera were generally identified to a finer taxonomic resolution (genus and species) than other taxa. Because there currently exists a large range of field and laboratory methods used by state programs, calibration among all programs to increase data comparability would be exceptionally challenging. However, because many techniques are shared among methods, limited testing could be designed to evaluate whether procedural differences affect the ability to determine levels of environmental impairment using benthic macroinvertebrate communities.

Unsupervised spike sorting based on discriminative subspace learning.

PubMed

Keshtkaran, Mohammad Reza; Yang, Zhi

2014-01-01

Spike sorting is a fundamental preprocessing step for many neuroscience studies which rely on the analysis of spike trains. In this paper, we present two unsupervised spike sorting algorithms based on discriminative subspace learning. The first algorithm simultaneously learns the discriminative feature subspace and performs clustering. It uses histogram of features in the most discriminative projection to detect the number of neurons. The second algorithm performs hierarchical divisive clustering that learns a discriminative 1-dimensional subspace for clustering in each level of the hierarchy until achieving almost unimodal distribution in the subspace. The algorithms are tested on synthetic and in-vivo data, and are compared against two widely used spike sorting methods. The comparative results demonstrate that our spike sorting methods can achieve substantially higher accuracy in lower dimensional feature space, and they are highly robust to noise. Moreover, they provide significantly better cluster separability in the learned subspace than in the subspace obtained by principal component analysis or wavelet transform.

Using the Identity Processing Style Q-Sort to Examine Identity Styles of Turkish Young Adults

ERIC Educational Resources Information Center

Eryigit, Suna; Kerpelman, Jennifer

2009-01-01

This paper reports on two studies with Turkish young adults that used the Turkish version of the Identity Processing Style Q-Sort (IPSQ). The IPSQ is based on Berzonsky's informational, normative, and diffused identity styles. Participants sort descriptors of the styles into columns ranging from most to least like them. Patterns in Turkish young…

High-Throughput, Motility-Based Sorter for Microswimmers such as C. elegans

PubMed Central

Yuan, Jinzhou; Zhou, Jessie; Raizen, David M.; Bau, Haim H.

2015-01-01

Animal motility varies with genotype, disease, aging, and environmental conditions. In many studies, it is desirable to carry out high throughput motility-based sorting to isolate rare animals for, among other things, forward genetic screens to identify genetic pathways that regulate phenotypes of interest. Many commonly used screening processes are labor-intensive, lack sensitivity, and require extensive investigator training. Here, we describe a sensitive, high throughput, automated, motility-based method for sorting nematodes. Our method is implemented in a simple microfluidic device capable of sorting thousands of animals per hour per module, and is amenable to parallelism. The device successfully enriches for known C. elegans motility mutants. Furthermore, using this device, we isolate low-abundance mutants capable of suppressing the somnogenic effects of the flp-13 gene, which regulates C. elegans sleep. By performing genetic complementation tests, we demonstrate that our motility-based sorting device efficiently isolates mutants for the same gene identified by tedious visual inspection of behavior on an agar surface. Therefore, our motility-based sorter is capable of performing high throughput gene discovery approaches to investigate fundamental biological processes. PMID:26008643

Development of the biology card sorting task to measure conceptual expertise in biology.

PubMed

Smith, Julia I; Combs, Elijah D; Nagami, Paul H; Alto, Valerie M; Goh, Henry G; Gourdet, Muryam A A; Hough, Christina M; Nickell, Ashley E; Peer, Adrian G; Coley, John D; Tanner, Kimberly D

2013-01-01

There are widespread aspirations to focus undergraduate biology education on teaching students to think conceptually like biologists; however, there is a dearth of assessment tools designed to measure progress from novice to expert biological conceptual thinking. We present the development of a novel assessment tool, the Biology Card Sorting Task, designed to probe how individuals organize their conceptual knowledge of biology. While modeled on tasks from cognitive psychology, this task is unique in its design to test two hypothesized conceptual frameworks for the organization of biological knowledge: 1) a surface feature organization focused on organism type and 2) a deep feature organization focused on fundamental biological concepts. In this initial investigation of the Biology Card Sorting Task, each of six analytical measures showed statistically significant differences when used to compare the card sorting results of putative biological experts (biology faculty) and novices (non-biology major undergraduates). Consistently, biology faculty appeared to sort based on hypothesized deep features, while non-biology majors appeared to sort based on either surface features or nonhypothesized organizational frameworks. Results suggest that this novel task is robust in distinguishing populations of biology experts and biology novices and may be an adaptable tool for tracking emerging biology conceptual expertise.

Clastic dikes of Heart Mountain fault breccia, northwestern Wyoming, and their significance

USGS Publications Warehouse

Pierce, W.G.

1979-01-01

Structural features in northwestern Wyoming indicate that the Heart Mountain fault movement was an extremely rapid, cataclysmic event that created a large volume of carbonate fault breccia derived entirely from the lower part of the upper plate. After fault movement had ceased, much of the carbonate fault breccia, here called calcibreccia, lay loose on the resulting surface of tectonic denudation. Before this unconsolidated calcibreccia could be removed by erosion, it was buried beneath a cover of Tertiary volcanic rocks: the Wapiti Formation, composed of volcanic breccia, poorly sorted volcanic breccia mudflows, and lava flows, and clearly shown in many places by inter lensing and intermixing of the calcibreccia with basal volcanic rocks. As the weight of volcanic overburden increased, the unstable water-saturated calcibreccia became mobile and semifluid and was injected upward as dikes into the overlying volcanic rocks and to a lesser extent into rocks of the upper plate. In some places the lowermost part of the volcanic overburden appears to have flowed with the calcibreccia to form dike like bodies of mixed volcanic rock and calcibreccia. One calcibreccia dike even contains carbonized wood, presumably incorporated into unconsolidated calcibreccia on the surface of tectonic denudation and covered by volcanic rocks before moving upward with the dike. Angular xenoliths of Precambrian rocks, enclosed in another calcibreccia dike and in an adjoining dikelike mass of volcanic rock as well, are believed to have been torn from the walls of a vent and incorporated into the basal part of the Wapiti Formation overlying the clastic carbonate rock on the fault surface. Subsequently, some of these xenoliths were incorporated into the calcibreccia during the process of dike intrusion. Throughout the Heart Mountain fault area, the basal part of the upper-plate blocks or masses are brecciated, irrespective of the size of the blocks, more intensely at the base and in places extending upward for several tens of meters. North of Republic Mountain a small 25-m-high upper-plate mass, brecciated to some degree throughout, apparently moved some distance along the Heart Mountain fault as brecciated rock. Calcibreccia dikes intrude upward from the underlying 2 m of fault breccia into the lower part of the mass and also from its top into the overlying volcanic rocks; an earthquake-related mechanism most likely accounts for the observed features of this deformed body. Calcibreccia dikes are more common within the bedding-plane phase of the Heart Mountain fault but also occur in its transgressive and former land-surface phases. Evidence that the Wapiti Formation almost immediately buried loose, unconsolidated fault breccia that was the source of the dike rock strongly suggests a rapid volcanic deposition over the area in which clastic dikes occur, which is at least 75 km long. Clastic dikes were injected into both the upper-plate and the volcanic rocks at about the same time, after movement on the Heart Mouuntain fault had ceased, and therefore do not indicate a fluid-flotation mechanism for the Heart Mountain fault. The difference between contacts of the clastic dikes with both indurated and unconsolidated country rock is useful in field mapping at localities where it is difficult to distinguish between volcanic rocks of the Cathedral Cliffs and Lamar River Formations, and the Wapiti Formation. Thus, calcibreccia dikes in the Cathedral Cliffs and Lamar River Formations show a sharp contact because the country rock solidified prior to fault movement, whereas calcibreccia dikes in the Wapiti Formation in many instances show a transitional or semifluid contact because the country rock was still unconsolidated or semifluid at the time of dike injection.

Design of mechanical arm for an automatic sorting system of recyclable cans

NASA Astrophysics Data System (ADS)

Resti, Y.; Mohruni, A. S.; Burlian, F.; Yani, I.; Amran, A.

2018-04-01

The use of a mechanical arm for an automatic sorting system of used cans should be designed carefully. The right design will result in a high precision sorting rate and a short sorting time. The design includes first; design manipulator,second; determine link and joint specifications, and third; build mechanical systems and control systems. This study aims to design the mechanical arm as a hardware system for automatic cans sorting system. The material used for the manipulator is the aluminum plate. The manipulator is designed using 6 links and 6 join where the 6th link is the end effectorand the 6th join is the gripper. As a driving motor used servo motor, while as a microcontroller used Arduino Uno which is connected with Matlab programming language. Based on testing, a mechanical arm designed for this recyclable canned recycling system has a precision sorting rate at 93%, where the average total time required for sorting is 10.82 seconds.

Mars Exploration Program 2007 Phoenix landing site selection and characteristics

USGS Publications Warehouse

Arvidson, R.; Adams, D.; Bonfiglio, G.; Christensen, P.; Cull, S.; Golombek, M.; Guinn, J.; Guinness, E.; Heet, T.; Kirk, R.; Knudson, A.; Malin, M.; Mellon, M.; McEwen, A.; Mushkin, A.; Parker, T.; Seelos, F.; Seelos, K.; Smith, P.; Spencer, D.; Stein, T.; Tamppari, L.

2009-01-01

To ensure a successful touchdown and subsequent surface operations, the Mars Exploration Program 2007 Phoenix Lander must land within 65?? to 72?? north latitude, at an elevation less than -3.5 km. The landing site must have relatively low wind velocities and rock and slope distributions similar to or more benign than those found at the Viking Lander 2 site. Also, the site must have a soil cover of at least several centimeters over ice or icy soil to meet science objectives of evaluating the environmental and habitability implications of past and current near-polar environments. The most challenging aspects of site selection were the extensive rock fields associated with crater rims and ejecta deposits and the centers of polygons associated with patterned ground. An extensive acquisition campaign of Odyssey Thermal Emission Imaging Spectrometer predawn thermal IR images, together with ???0.31 m/pixel Mars Reconnaissance Orbiter High Resolution Imaging Science Experiment images was implemented to find regions with acceptable rock populations and to support Monte Carlo landing simulations. The chosen site is located at 68.16?? north latitude, 233.35?? east longitude (areocentric), within a ???50 km wide (N-S) by ???300 km long (E-W) valley of relatively rock-free plains. Surfaces within the eastern portion of the valley are differentially eroded ejecta deposits from the relatively recent ???10-km-wide Heimdall crater and have fewer rocks than plains on the western portion of the valley. All surfaces exhibit polygonal ground, which is associated with fracture of icy soils, and are predicted to have only several centimeters of poorly sorted basaltic sand and dust over icy soil deposits. Copyright 2008 by the American Geophysical Union.

The Development and Validation of the Algebra Curriculum Based Measure: A Measure of Preschool Children's Sorting and Classifying Skills

ERIC Educational Resources Information Center

Maherally, Mohammad Iqbal

2014-01-01

The purpose of this study was to develop and validate an assessment tool entitled the Algebra Curriculum Based Measure (ACBM) with the intent of measuring preschool children's sorting and classifying skills based on one attribute (color, shape, and size) and two attributes (color and shape) simultaneously; and their ability to explain their…

A new method for reporting and interpreting textural composition of spawning gravel.

Treesearch

Fredrick B. Lotspeich; Fred H. Everest

1981-01-01

A new method has been developed for collecting, sorting, and interpreting gravel quality. Samples are collected with a tri-tube freeze-core device and dry-sorted by using sieves based on the Wentworth scale. An index to the quality of gravel is obtained by dividing geometric mean particle size by the sorting coefficient (a measure of the distribution of grain sizes) of...

FISHIS: Fluorescence In Situ Hybridization in Suspension and Chromosome Flow Sorting Made Easy

PubMed Central

Giorgi, Debora; Farina, Anna; Grosso, Valentina; Gennaro, Andrea; Ceoloni, Carla; Lucretti, Sergio

2013-01-01

The large size and complex polyploid nature of many genomes has often hampered genomics development, as is the case for several plants of high agronomic value. Isolating single chromosomes or chromosome arms via flow sorting offers a clue to resolve such complexity by focusing sequencing to a discrete and self-consistent part of the whole genome. The occurrence of sufficient differences in the size and or base-pair composition of the individual chromosomes, which is uncommon in plants, is critical for the success of flow sorting. We overcome this limitation by developing a robust method for labeling isolated chromosomes, named Fluorescent In situ Hybridization In suspension (FISHIS). FISHIS employs fluorescently labeled synthetic repetitive DNA probes, which are hybridized, in a wash-less procedure, to chromosomes in suspension following DNA alkaline denaturation. All typical A, B and D genomes of wheat, as well as individual chromosomes from pasta (T. durum L.) and bread (T. aestivum L.) wheat, were flow-sorted, after FISHIS, at high purity. For the first time in eukaryotes, each individual chromosome of a diploid organism, Dasypyrum villosum (L.) Candargy, was flow-sorted regardless of its size or base-pair related content. FISHIS-based chromosome sorting is a powerful and innovative flow cytogenetic tool which can develop new genomic resources from each plant species, where microsatellite DNA probes are available and high quality chromosome suspensions could be produced. The joining of FISHIS labeling and flow sorting with the Next Generation Sequencing methodology will enforce genomics for more species, and by this mightier chromosome approach it will be possible to increase our knowledge about structure, evolution and function of plant genome to be used for crop improvement. It is also anticipated that this technique could contribute to analyze and sort animal chromosomes with peculiar cytogenetic abnormalities, such as copy number variations or cytogenetic aberrations. PMID:23469124

FISHIS: fluorescence in situ hybridization in suspension and chromosome flow sorting made easy.

PubMed

Giorgi, Debora; Farina, Anna; Grosso, Valentina; Gennaro, Andrea; Ceoloni, Carla; Lucretti, Sergio

2013-01-01

The large size and complex polyploid nature of many genomes has often hampered genomics development, as is the case for several plants of high agronomic value. Isolating single chromosomes or chromosome arms via flow sorting offers a clue to resolve such complexity by focusing sequencing to a discrete and self-consistent part of the whole genome. The occurrence of sufficient differences in the size and or base-pair composition of the individual chromosomes, which is uncommon in plants, is critical for the success of flow sorting. We overcome this limitation by developing a robust method for labeling isolated chromosomes, named Fluorescent In situ Hybridization In suspension (FISHIS). FISHIS employs fluorescently labeled synthetic repetitive DNA probes, which are hybridized, in a wash-less procedure, to chromosomes in suspension following DNA alkaline denaturation. All typical A, B and D genomes of wheat, as well as individual chromosomes from pasta (T. durum L.) and bread (T. aestivum L.) wheat, were flow-sorted, after FISHIS, at high purity. For the first time in eukaryotes, each individual chromosome of a diploid organism, Dasypyrum villosum (L.) Candargy, was flow-sorted regardless of its size or base-pair related content. FISHIS-based chromosome sorting is a powerful and innovative flow cytogenetic tool which can develop new genomic resources from each plant species, where microsatellite DNA probes are available and high quality chromosome suspensions could be produced. The joining of FISHIS labeling and flow sorting with the Next Generation Sequencing methodology will enforce genomics for more species, and by this mightier chromosome approach it will be possible to increase our knowledge about structure, evolution and function of plant genome to be used for crop improvement. It is also anticipated that this technique could contribute to analyze and sort animal chromosomes with peculiar cytogenetic abnormalities, such as copy number variations or cytogenetic aberrations.

CellSort: a support vector machine tool for optimizing fluorescence-activated cell sorting and reducing experimental effort.

PubMed

Yu, Jessica S; Pertusi, Dante A; Adeniran, Adebola V; Tyo, Keith E J

2017-03-15

High throughput screening by fluorescence activated cell sorting (FACS) is a common task in protein engineering and directed evolution. It can also be a rate-limiting step if high false positive or negative rates necessitate multiple rounds of enrichment. Current FACS software requires the user to define sorting gates by intuition and is practically limited to two dimensions. In cases when multiple rounds of enrichment are required, the software cannot forecast the enrichment effort required. We have developed CellSort, a support vector machine (SVM) algorithm that identifies optimal sorting gates based on machine learning using positive and negative control populations. CellSort can take advantage of more than two dimensions to enhance the ability to distinguish between populations. We also present a Bayesian approach to predict the number of sorting rounds required to enrich a population from a given library size. This Bayesian approach allowed us to determine strategies for biasing the sorting gates in order to reduce the required number of enrichment rounds. This algorithm should be generally useful for improve sorting outcomes and reducing effort when using FACS. Source code available at http://tyolab.northwestern.edu/tools/ . k-tyo@northwestern.edu. Supplementary data are available at Bioinformatics online. © The Author 2016. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com

PhySortR: a fast, flexible tool for sorting phylogenetic trees in R.

PubMed

Stephens, Timothy G; Bhattacharya, Debashish; Ragan, Mark A; Chan, Cheong Xin

2016-01-01

A frequent bottleneck in interpreting phylogenomic output is the need to screen often thousands of trees for features of interest, particularly robust clades of specific taxa, as evidence of monophyletic relationship and/or reticulated evolution. Here we present PhySortR, a fast, flexible R package for classifying phylogenetic trees. Unlike existing utilities, PhySortR allows for identification of both exclusive and non-exclusive clades uniting the target taxa based on tip labels (i.e., leaves) on a tree, with customisable options to assess clades within the context of the whole tree. Using simulated and empirical datasets, we demonstrate the potential and scalability of PhySortR in analysis of thousands of phylogenetic trees without a priori assumption of tree-rooting, and in yielding readily interpretable trees that unambiguously satisfy the query. PhySortR is a command-line tool that is freely available and easily automatable.

Rare earth elements in weathering profiles and sediments of Minnesota: Implications for provenance studies

USGS Publications Warehouse

Morey, G.B.; Setterholm, D.R.

1997-01-01

The relative abundance of rare earth elements in sediments has been suggested as a tool for determining their source rocks. This correlation requires that weathering, erosion, and sedimentation do not alter the REE abundances, or do so in a predictable manner. We find that the rare earth elements are mobilized and fractionated by weathering, and that sediments derived from the weathered materials can display modifications of the original pattern of rare earth elements of some due to grain-size sorting of the weathered material. However, the REE distribution pattern of the provenance terrane can be recognized in the sediments.

Raman sorting and identification of single living micro-organisms with optical tweezers

NASA Astrophysics Data System (ADS)

Xie, Changan; Chen, De; Li, Yong-Qing

2005-07-01

We report on a novel technique for sorting and identification of single biological cells and food-borne bacteria based on laser tweezers and Raman spectroscopy (LTRS). With this technique, biological cells of different physiological states in a sample chamber were identified by their Raman spectral signatures and then they were selectively manipulated into a clean collection chamber with optical tweezers through a microchannel. As an example, we sorted the live and dead yeast cells into the collection chamber and validated this with a standard staining technique. We also demonstrated that bacteria existing in spoiled foods could be discriminated from a variety of food particles based on their characteristic Raman spectra and then isolated with laser manipulation. This label-free LTRS sorting technique may find broad applications in microbiology and rapid examination of food-borne diseases.

Microspherical photonics: Sorting resonant photonic atoms by using light

DOE Office of Scientific and Technical Information (OSTI.GOV)

Maslov, Alexey V., E-mail: avmaslov@yandex.ru; Astratov, Vasily N., E-mail: astratov@uncc.edu

2014-09-22

A method of sorting microspheres by resonant light forces in vacuum, air, or liquid is proposed. Based on a two-dimensional model, it is shown that the sorting can be realized by allowing spherical particles to traverse a focused beam. Under resonance with the whispering gallery modes, the particles acquire significant velocity along the beam direction. This opens a unique way of large-volume sorting of nearly identical photonic atoms with 1/Q accuracy, where Q is the resonance quality factor. This is an enabling technology for developing super-low-loss coupled-cavity structures and devices.

An Unsupervised Online Spike-Sorting Framework.

PubMed

Knieling, Simeon; Sridharan, Kousik S; Belardinelli, Paolo; Naros, Georgios; Weiss, Daniel; Mormann, Florian; Gharabaghi, Alireza

2016-08-01

Extracellular neuronal microelectrode recordings can include action potentials from multiple neurons. To separate spikes from different neurons, they can be sorted according to their shape, a procedure referred to as spike-sorting. Several algorithms have been reported to solve this task. However, when clustering outcomes are unsatisfactory, most of them are difficult to adjust to achieve the desired results. We present an online spike-sorting framework that uses feature normalization and weighting to maximize the distinctiveness between different spike shapes. Furthermore, multiple criteria are applied to either facilitate or prevent cluster fusion, thereby enabling experimenters to fine-tune the sorting process. We compare our method to established unsupervised offline (Wave_Clus (WC)) and online (OSort (OS)) algorithms by examining their performance in sorting various test datasets using two different scoring systems (AMI and the Adamos metric). Furthermore, we evaluate sorting capabilities on intra-operative recordings using established quality metrics. Compared to WC and OS, our algorithm achieved comparable or higher scores on average and produced more convincing sorting results for intra-operative datasets. Thus, the presented framework is suitable for both online and offline analysis and could substantially improve the quality of microelectrode-based data evaluation for research and clinical application.

Efficient Scalable Median Filtering Using Histogram-Based Operations.

PubMed

Green, Oded

2018-05-01

Median filtering is a smoothing technique for noise removal in images. While there are various implementations of median filtering for a single-core CPU, there are few implementations for accelerators and multi-core systems. Many parallel implementations of median filtering use a sorting algorithm for rearranging the values within a filtering window and taking the median of the sorted value. While using sorting algorithms allows for simple parallel implementations, the cost of the sorting becomes prohibitive as the filtering windows grow. This makes such algorithms, sequential and parallel alike, inefficient. In this work, we introduce the first software parallel median filtering that is non-sorting-based. The new algorithm uses efficient histogram-based operations. These reduce the computational requirements of the new algorithm while also accessing the image fewer times. We show an implementation of our algorithm for both the CPU and NVIDIA's CUDA supported graphics processing unit (GPU). The new algorithm is compared with several other leading CPU and GPU implementations. The CPU implementation has near perfect linear scaling with a speedup on a quad-core system. The GPU implementation is several orders of magnitude faster than the other GPU implementations for mid-size median filters. For small kernels, and , comparison-based approaches are preferable as fewer operations are required. Lastly, the new algorithm is open-source and can be found in the OpenCV library.

Development of the Biology Card Sorting Task to Measure Conceptual Expertise in Biology

PubMed Central

Smith, Julia I.; Combs, Elijah D.; Nagami, Paul H.; Alto, Valerie M.; Goh, Henry G.; Gourdet, Muryam A. A.; Hough, Christina M.; Nickell, Ashley E.; Peer, Adrian G.; Coley, John D.; Tanner, Kimberly D.

2013-01-01

There are widespread aspirations to focus undergraduate biology education on teaching students to think conceptually like biologists; however, there is a dearth of assessment tools designed to measure progress from novice to expert biological conceptual thinking. We present the development of a novel assessment tool, the Biology Card Sorting Task, designed to probe how individuals organize their conceptual knowledge of biology. While modeled on tasks from cognitive psychology, this task is unique in its design to test two hypothesized conceptual frameworks for the organization of biological knowledge: 1) a surface feature organization focused on organism type and 2) a deep feature organization focused on fundamental biological concepts. In this initial investigation of the Biology Card Sorting Task, each of six analytical measures showed statistically significant differences when used to compare the card sorting results of putative biological experts (biology faculty) and novices (non–biology major undergraduates). Consistently, biology faculty appeared to sort based on hypothesized deep features, while non–biology majors appeared to sort based on either surface features or nonhypothesized organizational frameworks. Results suggest that this novel task is robust in distinguishing populations of biology experts and biology novices and may be an adaptable tool for tracking emerging biology conceptual expertise. PMID:24297290

Field-Scale Hydraulic Conductivity (K) and Mass Transfer at the MADE Site in Columbus, Mississippi: A Review and Continuing Studies

NASA Astrophysics Data System (ADS)

Molz, F. J.; Guan, J.; Liu, H.; Zheng, C.

2005-12-01

During the late eighties and early nineties, several natural gradient tracer tests were conducted in a shallow unconfined fluvial aquifer at Columbus Air Force Base in Mississippi. The aquifer matrix was highly heterogeneous (natural log(K) variance of about 4.5) and consisted of poorly-sorted to well-sorted layered sandy gravel to gravely sand, with variable silt and clay content (Boggs et al., 1993). Prior to performing the tracer tests, the aquifer was characterized extensively using a borehole flow-meter. The resulting tracer plumes were highly elongated with dilute leading edges in the down-gradient direction, and transport appeared to be advection-dominated. Although there is still some controversy, reasonably successful simulations of the MADE tracer data have settled on an approximate dual porosity conceptualization of the aquifer matrix. Throughout the aquifer, high K zones (mobile porosity) are visualized as being in contact with low K zones (immobile porosity), with mass transfer between the zones governed by an effective mass transfer coefficient B. Such a transfer coefficient is analogous to the matrix diffusion coefficient Dm used to simulate transport in fractured rock with diffusion into the rock matrix (Foster, 1975). Recently, experiments and geometrically-based reasoning have been presented, implying that the effective Dm, like dispersivity, increases with travel distance (Liu et al., 2004; Zhou et al., 2005). Conversely, other studies based on multiple rate mass transfer between mobile and immobile porosities in granular media (Haggerty et al., 2004) have indicated that B will decrease with travel distance. Thus in geometrically complex granular media, like those at the MADE site, two opposing effects may be present. To further study this question, new 3-D simulations of tritium transport are being performed using flow-meter K data and the measured tritium concentrations at selected times. Results to date indicate that B generally decreases with scale, but changes will depend on the details of how the flow and mass transfer process at the MADE site is conceptualized. For example, did the tritium tracer injected initially all enter the mobile porosity, as commonly assumed, or was a significant portion of it forced into the immobile porosity? Was fluid in the immobile porosity essentially non-moving relative to mobile fluid, or did both fluid classes move significantly down-gradient. Alternatively, was tracer simply injected into an overall low K region, from which it slowly leaked out during the course of the 328 day experiment? Simulation results from different scenarios will be presented and implications discussed concerning the detailed scale-dependence of B at the MADE Site.

Raman-activated cell sorting based on dielectrophoretic single-cell trap and release.

PubMed

Zhang, Peiran; Ren, Lihui; Zhang, Xu; Shan, Yufei; Wang, Yun; Ji, Yuetong; Yin, Huabing; Huang, Wei E; Xu, Jian; Ma, Bo

2015-02-17

Raman-activated cell sorting (RACS) is a promising single-cell technology that holds several significant advantages, as RACS is label-free, information-rich, and potentially in situ. To date, the ability of the technique to identify single cells in a high-speed flow has been limited by inherent weakness of the spontaneous Raman signal. Here we present an alternative pause-and-sort RACS microfluidic system that combines positive dielectrophoresis (pDEP) for single-cell trap and release with a solenoid-valve-suction-based switch for cell separation. This has allowed the integration of trapping, Raman identification, and automatic separation of individual cells in a high-speed flow. By exerting a periodical pDEP field, single cells were trapped, ordered, and positioned individually to the detection point for Raman measurement. As a proof-of-concept demonstration, a mixture of two cell strains containing carotenoid-producing yeast (9%) and non-carotenoid-producing Saccharomyces cerevisiae (91%) was sorted, which enriched the former to 73% on average and showed a fast Raman-activated cell sorting at the subsecond level.

Study of an Educational Hand Sorting Intervention for Reducing Aflatoxin B1 in Groundnuts in Rural Gambia.

PubMed

Xu, Y A; Doel, Andrew; Watson, Sinead; Routledge, Michael N; Elliott, Christopher T; Moore, Sophie E; Gong, Yun Yun

2017-01-01

Aflatoxin, a human liver carcinogen, frequently contaminates groundnuts, maize, rice, and other grains, especially in Africa. The aim of this study was to evaluate the effectiveness of an educational intervention that involved training rural Gambian women on how to identify and remove moldy groundnuts to reduce aflatoxin B 1 (AFB 1 ) contamination. In total, 25 women, recruited from the West Kiang region of The Gambia, were trained on how to recognize and remove moldy groundnuts. Market-purchased groundnuts were hand sorted by the women. Groundnuts were sampled at baseline (n =5), after hand sorting ("clean," n =25 and "moldy," n =25), and after roasting (n =5). All samples were analyzed for AFB 1 by enzyme-linked immunosorbent assay. A reduction of 42.9% was achieved based on the median AFB 1 levels at baseline and after hand sorting (clean groundnuts), whereas an alternative estimate, based on the total AFB 1 in moldy and clean groundnuts, indicated a reduction of 96.7%, with a loss of only 2% of the groundnuts. By roasting the already clean sorted groundnuts, the AFB 1 reduction achieved (based on median levels) was 39.3%. This educational intervention on how to identify and remove moldy groundnuts was simple and effective in reducing AFB 1 contamination.

Rho kinase inhibitors: a patent review (2012 - 2013).

PubMed

Feng, Yangbo; LoGrasso, Philip V

2014-03-01

The Rho kinase/ROCK is critical in vital signal transduction pathways central to many essential cellular activities. Since ROCK possess multiple substrates, modulation of ROCK activity is useful for treatment of many diseases. Significant progress has been made in the development of ROCK inhibitors over the past two years (Jan 2012 to Aug 2013). Patent search in this review was based on FPO IP Research and Communities and Espacenet Patent Search. In this review, patent applications will be classified into four groups for discussions. The grouping is mainly based on structures or scaffolds (groups 1 and 2) and biological functions of ROCK inhibitors (groups 3 and 4). These four groups are i) ROCK inhibitors based on classical structural elements for ROCK inhibition; ii) ROCK inhibitors based on new scaffolds; iii) bis-functional ROCK inhibitors; and iv) novel applications of ROCK inhibitors. Although currently only one ROCK inhibitor (fasudil) is used as a drug, more drugs based on ROCK inhibition are expected to be advanced into market in the near future. Several directions should be considered for future development of ROCK inhibitors, such as soft ROCK inhibitors, bis-functional ROCK inhibitors, ROCK2 isoform-selective inhibitors, and ROCK inhibitors as antiproliferation agents.

Grading of apples based on firmness and soluble solids content using VIS-SWNIR spectroscopy and spectral scattering techniques

USDA-ARS?s Scientific Manuscript database

Sorting apple fruit based on internal quality will enhance the industry’s competiveness and profitability and assure consumer satisfaction. In this research, visible and shortwave near-infrared (Vis-SWNIR) spectroscopy (460–1,100 nm) and spectral scattering (450–1,050 nm) were used for sorting apple...

Digital data sets that describe aquifer characteristics of the High Plains Aquifer in western Oklahoma

USGS Publications Warehouse

Becker, C.J.; Runkle, D.L.; Rea, Alan

1997-01-01

ARC/INFO export files This diskette contains digitized aquifer boundaries and maps of hydraulic conductivity, recharge, and ground-water level elevation contours for the High Plains aquifer in western Oklahoma. This area encompasses the panhandle counties of Cimarron, Texas, and Beaver, and the western counties of Harper, Ellis, Woodward, Dewey, and Roger Mills. The High Plains aquifer underlies approximately 7,000 square miles of Oklahoma and is used extensively for irrigation. The High Plains aquifer is a water-table aquifer and consists predominately of the Tertiary-age Ogallala Formation and overlying Quaternary-age alluvial and terrace deposits. In some areas the aquifer is absent and the underlying Triassic, Jurassic, or Cretaceous-age rocks are exposed at the surface. These rocks are hydraulically connected with the aquifer in some areas. The High Plains aquifer is composed of interbedded sand, siltstone, clay, gravel, thin limestones, and caliche. The proportion of various lithological materials changes rapidly from place to place, but poorly sorted sand and gravel predominate. The rocks are poorly to moderately well cemented by calcium carbonate. The aquifer boundaries, hydraulic conductivity, and recharge data sets were created by extracting geologic contact lines from published digital surficial geology maps based on a scale of 1:125,000 for the panhandle counties and 1:250,000 for the western counties. The water-level elevation contours and some boundary lines were digitized from maps in a published water-level elevation map for 1980 based on a scale of 1:250,000. The hydraulic conductivity and recharge values in this report were used as input to the ground-water flow model on the High Plains aquifer. Ground-water flow models are numerical representations that simplify and aggregate natural systems. Models are not unique; different combinations of aquifer characteristics may produce similar results. Therefore, values of hydraulic conductivity and recharge used in the model and presented in this data set are not precise, but are within a reasonable range when compared to independently collected data.

Design and control of multifunctional sorting and training platform based on PLC control

NASA Astrophysics Data System (ADS)

Wan, Hongqiang; Ge, Shuai; Han, Peiying; Li, Fancong; Zhang, Simiao

2018-05-01

Electromechanical integration, as a multi-disciplinary subject, has been paid much attention by universities and is widely used in the automation production of enterprises. Aiming at the problem of the lack of control among enterprises and the lack of training among colleges and universities, this paper presents a design of multifunctional sorting training platform based on PLC control. Firstly, the structure of the platform is determined and three-dimensional modeling is done. Then design the platform's aerodynamic control and electrical control. Finally, realize the platform sorting function through PLC programming and configuration software development. The training platform can be used to design the practical training experiment, which has a strong advance and pertinence in the electromechanical integration teaching. At the same time, the platform makes full use of modular thinking to make the sorting modules more flexible. Compared with the traditional training platform, its teaching effect is more significant.

Overview of the Spirit Mars Exploration Rover Mission to Gusev Crater: Landing Site to Backstay Rock in the Columbia Hills

NASA Technical Reports Server (NTRS)

Arvidson, R. E.; Squyres, S. W,; Anderson, R. C.; Bell, J. F., III; Blaney, D.; Brueckner, J.; Cabrol, N. A.; Calvin, W. M.; Carr, M. H.; Christensen, P. R.;

Technical note: Impact of a molasses-based liquid feed supplement on the feed sorting behavior and growth of grain-fed veal calves.

PubMed

Gordon, L J; DeVries, T J

2016-08-01

This study was designed to determine the effect of adding a molasses-based liquid feed (LF) supplement to a high-grain mixed ration on the feed sorting behavior and growth of grain-fed veal calves. Twenty-four Holstein bull veal calves (90.2 ± 2.6 d of age, weighing 137.5 ± 16.9 kg) were split into groups of 4 and exposed, in a crossover design with 35-d periods, to each of 2 treatment diets: 1) control diet (76.0% high-moisture corn, 19.0% protein supplement, and 5.0% alfalfa/grass haylage) and 2) LF diet (68.4% corn, 17.1% protein supplement, 9.0% molasses-based LF, and 4.5% alfalfa/grass haylage). Diets were designed to support 1.5 kg/d of growth. Data were collected for the final 3 wk of each treatment period. Feed intakes were recorded daily and calves were weighed 2 times/wk. Feed samples of fresh feed and refusals were collected 3 times/wk for particle size analysis. The particle size separator had 3 screens (19, 8, and 1.18 mm) and a bottom pan, resulting in 4 fractions (long, medium, short, and fine). Sorting was calculated as the actual intake of each fraction expressed as a percent of its predicted intake. Calves tended ( = 0.08) to sort for long particles on the control diet (110.5%) and did not sort these particles on the LF diet (96.8%). Sorting for medium particles (102.6%) was similar ( = 0.9) across diets. Calves sorted against short particles on the LF diet (97.5%; = 0.04) but did not sort this fraction on the control diet (99.4%). Calves sorted against fine particles (79.3%) to a similar extent ( = 0.2) on both diets. Dry matter intake was similar across diets (6.1 kg/d; = 0.9), but day-to-day variability in DMI was greater (0.5 vs. 0.4 kg/d; = 0.04) when calves were fed the control compared with the LF diet. Calves on both diets had similar ADG (1.6 kg/d; = 0.8) as well as within-pen variability in ADG (0.4 kg/d; = 0.7). The feed-to-gain ratio was also similar between control and LF diets (4.3 vs. 3.9 kg DM/kg gain; = 0.4). The results suggest that supplementation of a molasses-based LF to high-grain fattening veal calf diets can reduce variability in feed consumption, both within and across days.

The Q sort theory and technique.

PubMed

Nyatanga, L

1989-10-01

This paper is based on the author's experience of using the Q sort technique with BA Social Sciences (BASS) students, and the community psychiatric nursing (CPN, ENB No 811 course). The paper focuses on two main issues: 1. The theoretical assumptions underpinning the Q Sort technique. Carl Rogers' self theory and some of the values of humanistic psychology are summarised. 2. The actual technique procedure and meaning of results are highlighted. As the Q Sort technique is potentially useful in a variety of sittings some of which are listed in this paper, the emphasis has deliberately been placed in understanding the theoretical underpinning and the operationalisation (sensitive interpretation) of the theory to practice.

A sorting system with automated gates permits individual operant experiments with mice from a social home cage.

PubMed

Winter, York; Schaefers, Andrea T U

2011-03-30

Behavioral experiments based on operant procedures can be time-consuming for small amounts of data. While individual testing and handling of animals can influence attention, emotion, and behavior, and interfere with experimental outcome, many operant protocols require individual testing. We developed an RFID-technology- and transponder-based sorting system that allows removing the human factor for longer-term experiments. Identity detectors and automated gates route mice individually from their social home cage to an adjacent operant compartment with 24/7 operation. CD1-mice learnt quickly to individually pass through the sorting system. At no time did more than a single mouse enter the operant compartment. After 3 days of adjusting to the sorting system, groups of 4 mice completed about 50 experimental trials per day in the operant compartment without experimenter intervention. The automated sorting system eliminates handling, isolation, and disturbance of the animals, eliminates experimenter-induced variability, saves experimenter time, and is financially economical. It makes possible a new approach for high-throughput experimentation, and is a viable tool for increasing quality and efficiency of many behavioral and neurobiological investigations. It can connect a social home cage, through individual sorting automation, to diverse setups including classical operant chambers, mazes, or arenas with video-based behavior classification. Such highly automated systems will permit efficient high-throughput screening even for transgenic animals with only subtle neurological or psychiatric symptoms where elaborate or longer-term protocols are required for behavioral diagnosis. Copyright © 2011 Elsevier B.V. All rights reserved.

Spike sorting using locality preserving projection with gap statistics and landmark-based spectral clustering.

PubMed

Nguyen, Thanh; Khosravi, Abbas; Creighton, Douglas; Nahavandi, Saeid

2014-12-30

Understanding neural functions requires knowledge from analysing electrophysiological data. The process of assigning spikes of a multichannel signal into clusters, called spike sorting, is one of the important problems in such analysis. There have been various automated spike sorting techniques with both advantages and disadvantages regarding accuracy and computational costs. Therefore, developing spike sorting methods that are highly accurate and computationally inexpensive is always a challenge in the biomedical engineering practice. An automatic unsupervised spike sorting method is proposed in this paper. The method uses features extracted by the locality preserving projection (LPP) algorithm. These features afterwards serve as inputs for the landmark-based spectral clustering (LSC) method. Gap statistics (GS) is employed to evaluate the number of clusters before the LSC can be performed. The proposed LPP-LSC is highly accurate and computationally inexpensive spike sorting approach. LPP spike features are very discriminative; thereby boost the performance of clustering methods. Furthermore, the LSC method exhibits its efficiency when integrated with the cluster evaluator GS. The proposed method's accuracy is approximately 13% superior to that of the benchmark combination between wavelet transformation and superparamagnetic clustering (WT-SPC). Additionally, LPP-LSC computing time is six times less than that of the WT-SPC. LPP-LSC obviously demonstrates a win-win spike sorting solution meeting both accuracy and computational cost criteria. LPP and LSC are linear algorithms that help reduce computational burden and thus their combination can be applied into real-time spike analysis. Copyright © 2014 Elsevier B.V. All rights reserved.

Stability-based sorting: The forgotten process behind (not only) biological evolution.

PubMed

Toman, Jan; Flegr, Jaroslav

2017-12-21

Natural selection is considered to be the main process that drives biological evolution. It requires selected entities to originate dependent upon one another by the means of reproduction or copying, and for the progeny to inherit the qualities of their ancestors. However, natural selection is a manifestation of a more general persistence principle, whose temporal consequences we propose to name "stability-based sorting" (SBS). Sorting based on static stability, i.e., SBS in its strict sense and usual conception, favours characters that increase the persistence of their holders and act on all material and immaterial entities. Sorted entities could originate independently from each other, are not required to propagate and need not exhibit heredity. Natural selection is a specific form of SBS-sorting based on dynamic stability. It requires some form of heredity and is based on competition for the largest difference between the speed of generating its own copies and their expiration. SBS in its strict sense and selection thus have markedly different evolutionary consequences that are stressed in this paper. In contrast to selection, which is opportunistic, SBS is able to accumulate even momentarily detrimental characters that are advantageous for the long-term persistence of sorted entities. However, it lacks the amplification effect based on the preferential propagation of holders of advantageous characters. Thus, it works slower than selection and normally is unable to create complex adaptations. From a long-term perspective, SBS is a decisive force in evolution-especially macroevolution. SBS offers a new explanation for numerous evolutionary phenomena, including broad distribution and persistence of sexuality, altruistic behaviour, horizontal gene transfer, patterns of evolutionary stasis, planetary homeostasis, increasing ecosystem resistance to disturbances, and the universal decline of disparity in the evolution of metazoan lineages. SBS acts on all levels in all biotic and abiotic systems. It could be the only truly universal evolutionary process, and an explanatory framework based on SBS could provide new insight into the evolution of complex abiotic and biotic systems. Copyright © 2017 Elsevier Ltd. All rights reserved.

Evidence suggests water once flowed vigorously on Mars

NASA Astrophysics Data System (ADS)

Showstack, Randy

2012-10-01

"In some cases, when you do geology, a picture is worth 1000 words," Mars Science Laboratory project scientist John Grotzinger said at a 27 September news briefing to announce that imagery taken by a camera onboard NASA's Mars Curiosity rover shows evidence that water once flowed vigorously in a region on the surface of Mars. One of the pictured rock outcrops, about 10-15 centimeters thick and named Hottah after Canada's Hottah lake, "looked like somebody came along the surface of Mars with a jackhammer and lifted up a sidewalk that you might see in downtown LA in sort of a construction site," said Grotzinger, who is with the California Institute of Technology in Pasadena. "This is a rock that was formed in the presence of water, and we can characterize that water as being a vigorous flow on the surface of Mars," he said. "We were really excited about this because this is one of the reasons we were interested in coming to this landing site, because it presented from orbit quite a strong case that we would find evidence for water on the ground."

Linking Home Plate and Algonquin Class Rocks through Microtextural Analysis: Evidence for Hydrovolcanism in the Inner Basin of Columbia Hills, Gusev Crater

NASA Technical Reports Server (NTRS)

Mittlefehldt, David W.; Yingst, R. Aileen; Schmidt, Mariek E.; Herkenhoff, Ken E.

2007-01-01

Examining the his-tory of a rock as the summed history of its constituent grains is a proven and powerful strategy that has been used on Earth to maximize the information that can be gleaned from limited samples. Grain size, sorting, roundness, and texture can be observed at the handlens scale, and may reveal clues to transport regime (e.g. fluvial, glacial, eolian) and transport distance. Diagenetic minerals may be of a form and textural context to allow identification, and to point to dominant diagenetic processes (e.g. evaporitic concentration, intermittent dissolution, early vs. late diagenetic emplacement). Handlens scale features of volcaniclastic particles may be diagnostic of primary vs recycled (by surface processes) grains and may provide information about eruptive patterns and processes. When the study site is truly remote, such as Mars, and when there are severe limitations on sample return or sample analysis with other methods, examination at the hand lens scale becomes critical both for extracting a maximum of information, and for best utilizing finite analytical capabilities.

Multiple component end-member mixing model of dilution: hydrochemical effects of construction water at Yucca Mountain, Nevada, USA

NASA Astrophysics Data System (ADS)

Lu, Guoping; Sonnenthal, Eric L.; Bodvarsson, Gudmundur S.

2008-12-01

The standard dual-component and two-member linear mixing model is often used to quantify water mixing of different sources. However, it is no longer applicable whenever actual mixture concentrations are not exactly known because of dilution. For example, low-water-content (low-porosity) rock samples are leached for pore-water chemical compositions, which therefore are diluted in the leachates. A multicomponent, two-member mixing model of dilution has been developed to quantify mixing of water sources and multiple chemical components experiencing dilution in leaching. This extended mixing model was used to quantify fracture-matrix interaction in construction-water migration tests along the Exploratory Studies Facility (ESF) tunnel at Yucca Mountain, Nevada, USA. The model effectively recovers the spatial distribution of water and chemical compositions released from the construction water, and provides invaluable data on the matrix fracture interaction. The methodology and formulations described here are applicable to many sorts of mixing-dilution problems, including dilution in petroleum reservoirs, hydrospheres, chemical constituents in rocks and minerals, monitoring of drilling fluids, and leaching, as well as to environmental science studies.

Construction and destruction of some North American cratons

NASA Astrophysics Data System (ADS)

Snyder, David B.; Humphreys, Eugene; Pearson, D. Graham

2017-01-01

Construction histories of Archean cratons remain poorly understood; their destruction is even less clear because of its rarity, but metasomatic weakening is an essential precursor. By assembling geophysical and geochemical data in 3-D lithosphere models, a clearer understanding of the geometry of major structures within the Rae, Slave and Wyoming cratons of central North America is now possible. Little evidence exists of subducted slab-like geometries similar to modern oceanic lithosphere in these construction histories. Underthrusting and wedging of proto-continental lithosphere is inferred from multiple dipping discontinuities, emphasizing the role of lateral accretion. Archean continental building blocks may resemble the modern lithosphere of oceanic plateau, but they better match the sort of refractory crust expected to have formed at Archean ocean spreading centres. Radiometric dating of mantle xenoliths provides estimates of rock types and ages at depth beneath sparse kimberlite occurrences, and these ages can be correlated to surface rocks. The 3.6-2.6 Ga Rae, Slave and Wyoming cratons stabilized during a granitic bloom at 2.61-2.55 Ga. This stabilization probably represents the final differentiation of early crust into a relatively homogeneous, uniformly thin (35-42 km), tonalite-trondhjemite-granodiorite crust with pyroxenite layers near the Moho atop depleted lithospheric mantle. Peak thermo-tectonic events at 1.86-1.7 Ga broadly metasomatized, mineralized and recrystallized mantle and lower crustal rocks, apparently making mantle peridotite more 'fertile' and more conductive by introducing or concentrating sulfides or graphite at 80-120 km depths. This metasomatism may have also weakened the lithosphere or made it more susceptible to tectonic or chemical erosion. Late Cretaceous flattening of Farallon lithosphere that included the Shatsky Rise conjugate appears to have weakened, eroded and displaced the base of the Wyoming craton below 140-160 km. This process replaced the old re-fertilized continental mantle with relatively young depleted oceanic mantle.

A degradation-based sorting method for lithium-ion battery reuse.

PubMed

Chen, Hao; Shen, Julia

2017-01-01

In a world where millions of people are dependent on batteries to provide them with convenient and portable energy, battery recycling is of the utmost importance. In this paper, we developed a new method to sort 18650 Lithium-ion batteries in large quantities and in real time for harvesting used cells with enough capacity for battery reuse. Internal resistance and capacity tests were conducted as a basis for comparison with a novel degradation-based method based on X-ray radiographic scanning and digital image contrast computation. The test results indicate that the sorting accuracy of the test cells is about 79% and the execution time of our algorithm is at a level of 200 milliseconds, making our method a potential real-time solution for reusing the remaining capacity in good used cells.

Alluvial fan facies of the Yongchong Basin: Implications for tectonic and paleoclimatic changes during Late Cretaceous in SE China

NASA Astrophysics Data System (ADS)

Chen, Liuqin; Steel, Ronald J.; Guo, Fusheng; Olariu, Cornel; Gong, Chenglin

2017-02-01

Late Cretaceous continental redbeds, the Guifeng Group of the Yongchong Basin in SE China have been investigated to conduct detailed fan facies description and interpretation. Tectonic activities determined the alluvial fan development along the basin margin, but the alluvial facies was linked with paleoclimate changes. The Guifeng Group is divided into the Hekou, Tangbian and Lianhe formations in ascending order. The Hekou conglomerates are typically polymict, moderately sorted with erosional bases, cut-and-fill features, normal grading and sieve deposits, representing dominant stream-flows on alluvial fans during the initial opening stage of the basin infill. The Tangbian Formation, however, is characterized by structureless fine-grained sediments with dispersed coarse clasts, and couplets of conglomerate and sandstone or siltstone and mudstone, recording a change to a playa and ephemeral lake environments with occasional stream flooding, thus indicating a basin expanding stage. The hallmark of the Lianhe Formation is disorganized, poorly sorted conglomerates lack of erosional bases, and a wide particle-size range from clay to boulders together reflect mud-rich debris-flows accumulating on fans, likely related to reactivation of faulting along the northwestern mountain fronts during a post-rift stage. The depositional system changes from stream-flows up through playa with ephemeral streams to debris-flows during the accumulation of the three formations are thus attributed to different source rocks and climatic conditions. Therefore, the fluvial-dominated fans of the Hekou Formation recorded a subhumid paleoclimate (Coniacian-Santonian Age). The dominant semiarid climate during the Campanian Age produced abundant fine-grained sediments in the playa and ephemeral lake environments of the Tangbian Formation. A climatic change towards more humidity during the late stage of the Guifeng Group (Maastrichtian Age) probably yielded high deposition rate of coarse clasts in debris-flow dominated fans of the Lianhe Formation. Thus the Late Cretaceous climate changes are inferred to have influenced and preserved signals in the alluvial stratigraphy of the Yongchong Basin.

An on-chip imaging droplet-sorting system: a real-time shape recognition method to screen target cells in droplets with single cell resolution

NASA Astrophysics Data System (ADS)

Girault, Mathias; Kim, Hyonchol; Arakawa, Hisayuki; Matsuura, Kenji; Odaka, Masao; Hattori, Akihiro; Terazono, Hideyuki; Yasuda, Kenji

2017-01-01

A microfluidic on-chip imaging cell sorter has several advantages over conventional cell sorting methods, especially to identify cells with complex morphologies such as clusters. One of the remaining problems is how to efficiently discriminate targets at the species level without labelling. Hence, we developed a label-free microfluidic droplet-sorting system based on image recognition of cells in droplets. To test the applicability of this method, a mixture of two plankton species with different morphologies (Dunaliella tertiolecta and Phaeodactylum tricornutum) were successfully identified and discriminated at a rate of 10 Hz. We also examined the ability to detect the number of objects encapsulated in a droplet. Single cell droplets sorted into collection channels showed 91 ± 4.5% and 90 ± 3.8% accuracy for D. tertiolecta and P. tricornutum, respectively. Because we used image recognition to confirm single cell droplets, we achieved highly accurate single cell sorting. The results indicate that the integrated method of droplet imaging cell sorting can provide a complementary sorting approach capable of isolating single target cells from a mixture of cells with high accuracy without any staining.

An on-chip imaging droplet-sorting system: a real-time shape recognition method to screen target cells in droplets with single cell resolution.

PubMed

Girault, Mathias; Kim, Hyonchol; Arakawa, Hisayuki; Matsuura, Kenji; Odaka, Masao; Hattori, Akihiro; Terazono, Hideyuki; Yasuda, Kenji

2017-01-06

A microfluidic on-chip imaging cell sorter has several advantages over conventional cell sorting methods, especially to identify cells with complex morphologies such as clusters. One of the remaining problems is how to efficiently discriminate targets at the species level without labelling. Hence, we developed a label-free microfluidic droplet-sorting system based on image recognition of cells in droplets. To test the applicability of this method, a mixture of two plankton species with different morphologies (Dunaliella tertiolecta and Phaeodactylum tricornutum) were successfully identified and discriminated at a rate of 10 Hz. We also examined the ability to detect the number of objects encapsulated in a droplet. Single cell droplets sorted into collection channels showed 91 ± 4.5% and 90 ± 3.8% accuracy for D. tertiolecta and P. tricornutum, respectively. Because we used image recognition to confirm single cell droplets, we achieved highly accurate single cell sorting. The results indicate that the integrated method of droplet imaging cell sorting can provide a complementary sorting approach capable of isolating single target cells from a mixture of cells with high accuracy without any staining.

Automatic Spike Sorting Using Tuning Information

PubMed Central

Ventura, Valérie

2011-01-01

Current spike sorting methods focus on clustering neurons’ characteristic spike waveforms. The resulting spike-sorted data are typically used to estimate how covariates of interest modulate the firing rates of neurons. However, when these covariates do modulate the firing rates, they provide information about spikes’ identities, which thus far have been ignored for the purpose of spike sorting. This letter describes a novel approach to spike sorting, which incorporates both waveform information and tuning information obtained from the modulation of firing rates. Because it efficiently uses all the available information, this spike sorter yields lower spike misclassification rates than traditional automatic spike sorters. This theoretical result is verified empirically on several examples. The proposed method does not require additional assumptions; only its implementation is different. It essentially consists of performing spike sorting and tuning estimation simultaneously rather than sequentially, as is currently done. We used an expectation-maximization maximum likelihood algorithm to implement the new spike sorter. We present the general form of this algorithm and provide a detailed implementable version under the assumptions that neurons are independent and spike according to Poisson processes. Finally, we uncover a systematic flaw of spike sorting based on waveform information only. PMID:19548802

Automatic spike sorting using tuning information.

PubMed

Ventura, Valérie

2009-09-01

Current spike sorting methods focus on clustering neurons' characteristic spike waveforms. The resulting spike-sorted data are typically used to estimate how covariates of interest modulate the firing rates of neurons. However, when these covariates do modulate the firing rates, they provide information about spikes' identities, which thus far have been ignored for the purpose of spike sorting. This letter describes a novel approach to spike sorting, which incorporates both waveform information and tuning information obtained from the modulation of firing rates. Because it efficiently uses all the available information, this spike sorter yields lower spike misclassification rates than traditional automatic spike sorters. This theoretical result is verified empirically on several examples. The proposed method does not require additional assumptions; only its implementation is different. It essentially consists of performing spike sorting and tuning estimation simultaneously rather than sequentially, as is currently done. We used an expectation-maximization maximum likelihood algorithm to implement the new spike sorter. We present the general form of this algorithm and provide a detailed implementable version under the assumptions that neurons are independent and spike according to Poisson processes. Finally, we uncover a systematic flaw of spike sorting based on waveform information only.

Feature extraction using extrema sampling of discrete derivatives for spike sorting in implantable upper-limb neural prostheses.

PubMed

Zamani, Majid; Demosthenous, Andreas

2014-07-01

Next generation neural interfaces for upper-limb (and other) prostheses aim to develop implantable interfaces for one or more nerves, each interface having many neural signal channels that work reliably in the stump without harming the nerves. To achieve real-time multi-channel processing it is important to integrate spike sorting on-chip to overcome limitations in transmission bandwidth. This requires computationally efficient algorithms for feature extraction and clustering suitable for low-power hardware implementation. This paper describes a new feature extraction method for real-time spike sorting based on extrema analysis (namely positive peaks and negative peaks) of spike shapes and their discrete derivatives at different frequency bands. Employing simulation across different datasets, the accuracy and computational complexity of the proposed method are assessed and compared with other methods. The average classification accuracy of the proposed method in conjunction with online sorting (O-Sort) is 91.6%, outperforming all the other methods tested with the O-Sort clustering algorithm. The proposed method offers a better tradeoff between classification error and computational complexity, making it a particularly strong choice for on-chip spike sorting.

An on-chip imaging droplet-sorting system: a real-time shape recognition method to screen target cells in droplets with single cell resolution

PubMed Central

Girault, Mathias; Kim, Hyonchol; Arakawa, Hisayuki; Matsuura, Kenji; Odaka, Masao; Hattori, Akihiro; Terazono, Hideyuki; Yasuda, Kenji

2017-01-01

A microfluidic on-chip imaging cell sorter has several advantages over conventional cell sorting methods, especially to identify cells with complex morphologies such as clusters. One of the remaining problems is how to efficiently discriminate targets at the species level without labelling. Hence, we developed a label-free microfluidic droplet-sorting system based on image recognition of cells in droplets. To test the applicability of this method, a mixture of two plankton species with different morphologies (Dunaliella tertiolecta and Phaeodactylum tricornutum) were successfully identified and discriminated at a rate of 10 Hz. We also examined the ability to detect the number of objects encapsulated in a droplet. Single cell droplets sorted into collection channels showed 91 ± 4.5% and 90 ± 3.8% accuracy for D. tertiolecta and P. tricornutum, respectively. Because we used image recognition to confirm single cell droplets, we achieved highly accurate single cell sorting. The results indicate that the integrated method of droplet imaging cell sorting can provide a complementary sorting approach capable of isolating single target cells from a mixture of cells with high accuracy without any staining. PMID:28059147

Research and Development of Target Recognition and Location Crawling Platform based on Binocular Vision

NASA Astrophysics Data System (ADS)

Xu, Weidong; Lei, Zhu; Yuan, Zhang; Gao, Zhenqing

2018-03-01

The application of visual recognition technology in industrial robot crawling and placing operation is one of the key tasks in the field of robot research. In order to improve the efficiency and intelligence of the material sorting in the production line, especially to realize the sorting of the scattered items, the robot target recognition and positioning crawling platform based on binocular vision is researched and developed. The images were collected by binocular camera, and the images were pretreated. Harris operator was used to identify the corners of the images. The Canny operator was used to identify the images. Hough-chain code recognition was used to identify the images. The target image in the image, obtain the coordinates of each vertex of the image, calculate the spatial position and posture of the target item, and determine the information needed to capture the movement and transmit it to the robot control crawling operation. Finally, In this paper, we use this method to experiment the wrapping problem in the express sorting process The experimental results show that the platform can effectively solve the problem of sorting of loose parts, so as to achieve the purpose of efficient and intelligent sorting.

Neutrinos from Hell: the Dawn of Neutrino Geophysics

ScienceCinema

Gratta, Giorgio

2018-02-26

Seismic waves have been for long time the only messenger reporting on the conditions deep inside the Earth. While global seismology provides amazing details about the structure of our planet, it is only sensitive to the mechanical properties of rocks and not to their chemical composition. In the last 5 years KamLAND and Borexino have started measuring anti-neutrinos produced by Uranium and Thorium inside the Earth. Such "Geoneutrinos" double the number of tools available to study the Earth's interior, enabling a sort of global chemical analysis of the planet, albeit for two elements only. I will discuss the results of these new measurements and put them in the context of the Earth Sciences.

New views of granular mass flows

USGS Publications Warehouse

Iverson, R.M.; Vallance, J.W.

2001-01-01

Concentrated grain-fluid mixtures in rock avalanches, debris flows, and pyroclastic flows do not behave as simple materials with fixed rheologies. Instead, rheology evolves as mixture agitation, grain concentration, and fluid-pressure change during flow initiation, transit, and deposition. Throughout a flow, however, normal forces on planes parallel to the free upper surface approximately balance the weight of the superincumbent mixture, and the Coulomb friction rule describes bulk intergranular shear stresses on such planes. Pore-fluid pressure can temporarily or locally enhance mixture mobility by reducing Coulomb friction and transferring shear stress to the fluid phase. Initial conditions, boundary conditions, and grain comminution and sorting can influence pore-fluid pressures and cause variations in flow dynamics and deposits.

The effects of hoechst 33342 staining and the male sample donor on the sorting efficiency of canine spermatozoa.

PubMed

Rodenas, C; Lucas, X; Tarantini, T; Del Olmo, D; Roca, J; Vazquez, J M; Martinez, E A; Parrilla, I

2014-02-01

The aim of this study was to evaluate the influence of Hoechst 33342 (H-42) concentration and of the male donor on the efficiency of sex-sorting procedure in canine spermatozoa. Semen samples from six dogs (three ejaculates/dog) were diluted to 100 × 10(6) sperm/ml, split into four aliquots, stained with increasing H-42 concentrations (5, 7.5, 10 and 12.5 μl, respectively) and sorted by flow cytometry. The rates of non-viable (FDA+), oriented (OS) and selected spermatozoa (SS), as well as the average sorting rates (SR, sorted spermatozoa/s), were used to determine the sorting efficiency. The effects of the sorting procedure on the quality of sorted spermatozoa were evaluated in terms of total motility (TM), percentage of viable spermatozoa (spermatozoa with membrane and acrosomal integrity) and percentage of spermatozoa with reacted/damaged acrosomes. X- and Y-chromosome-bearing sperm populations were identified in all of the samples stained with 7.5, 10 and 12.5 μl of H-42, while these two populations were only identified in 77.5% of samples stained with 5 μl. The values of OS, SS and SR were influenced by the male donor (p < 0.01) but not by the H-42 concentration used. The quality of sorted sperm samples immediately after sorting was similar to that of fresh samples, while centrifugation resulted in significant reduction (p < 0.05) in TM and in the percentage of viable spermatozoa and a significant increase (p < 0.01) in the percentage of spermatozoa with damage/reacted acrosomes. In conclusion, the sex-sorting of canine spermatozoa by flow cytometry can be performed successfully using H-42 concentrations between 7.5 and 12.5 μl. The efficiency of the sorting procedure varies based on the dog from which the sperm sample derives. © 2013 Blackwell Verlag GmbH.

Nondestructive detection of infested chestnuts based on NIR spectroscopy

USDA-ARS?s Scientific Manuscript database

Insect feeding is a significant postharvest problem for processors of Chestnuts (Castanea sativa, Miller). In most cases, damage from insects is 'hidden', i.e. not visually detectable on the fruit surface. Consequently, traditional sorting techniques, including manual sorting, are generally inadequa...

Criteria for the recognition and correlation of sandstone units in the Precambrian and Paleozoic-Mesozoic clastic sequence in the near east

NASA Astrophysics Data System (ADS)

Weissbrod, T.; Perath, I.

A systematic study of the Precambrian and Paleozoic-Mesozoic clastic sequences (Nubian Sandstone) in Israel and Sinai, and a comparative analysis of its stratigraphy in neighbouring countries, has shown that besides the conventional criteria of subdivision (lithology, field appearance, photogeological features, fossil content), additional criteria can be applied, which singly or in mutual conjuction enable the recognition of widespread units and boundaries. These criteria show lateral constancy, and recurrence of a similar vertical sequence over great distances, and are therefore acceptable for the identification of synchronous, region-wide sedimentary units (and consequently, major unconformities). They also enable, once the units are established, to identify detached (not in situ) samples, samples from isolated or discontinous outcrops, borehole material or archive material. The following rock properties were tested and found to be usefuls in stratigraphic interpretation, throughout large distribution areas of the clastic sequence: Landscape, which is basically the response of a particular textural-chemic al aggregate to atmospheric weathering. Characteristic outcrop feature — styles of roundness or massivity, fissuring or fliatin, slope profile, bedding — express a basic uniformity of these platform-type clastics. Colors are often stratigraphically constant over hundreds of kilometers, through various climates and topographies, and express some intrinsic unity of the rock bodies. Grain size and sorting, when cross-plotted, enable to differentiate existing unit. The method requires the analysis of representative numbers of samples. Vertical trends of median grain size and sorting show reversals, typically across unconformities. Feldstar content diminishes from 15-50% in Precambrian-Paleozoic rocks to a mere 5% or less in Mesozoic sandstones — a distinctive regionwide time trend. Dominance of certain feldstar types characterizes Precambrian and Paleozoic units. Clay minerals, though subordinate, characterize certain units. Illite is usually the dominant clay mineral in the Precambrain-Paleozoic sediments, showing different degress of crystallization in different units. Kaolinite is the main, often the only clay mineral in Mesozoic units. Heavy minerals, whose species spectra reflect on parent rock and provenance terrain and whose differential response to degradation points to the sedimentary history of the deposit, show certain vertical regularities, such as the abrupt disappearance of species or whole assemblages at certain levels, indicating unconformities. Trace metals, which in places reach ore concentrations (e.g. copper), are often extensive, though of well-defined vertical distribution. They express adsorptive capacity of specific widespread lithologies, enabling the discrimination of units. Even though each of these criteria is not always by itself diagnostic, they may in conjuction with one or more other criteria amount to a petrographic fingerprint that enables fairly accurate identification of the age interval of the unit, and its relation both to the regional and the local stratigraphic sequence.

Microfluidic droplet sorting using integrated bilayer micro-valves

NASA Astrophysics Data System (ADS)

Chen, Yuncong; Tian, Yang; Xu, Zhen; Wang, Xinran; Yu, Sicong; Dong, Liang

2016-10-01

This paper reports on a microfluidic device capable of sorting microfluidic droplets utilizing conventional bilayer pneumatic micro-valves as sorting controllers. The device consists of two micro-valves placed symmetrically on two sides of a sorting area, each on top of a branching channel at an inclined angle with respect to the main channel. Changes in transmitted light intensity, induced by varying light absorbance by each droplet, are used to divert the droplet from the sorting area into one of the three outlet channels. When no valve is activated, the droplet flows into the outlet channel in the direction of the main channel. When one of the valves is triggered, the flexible membrane of valve will first be deflected. Once the droplet leaves the detection point, the deflected membrane will immediately return to its default flattened position, thereby exerting a drawing pressure on the droplet and deviating it from its original streamline to the outlet on the same side as the valve. This sorting method will be particularly suitable for numerous large-scale integrated microfluidic systems, where pneumatic micro-valves are already used. Only few structural modifications are needed to achieve droplet sorting capabilities in these systems. Due to the mechanical nature of diverting energy applied to droplets, the proposed sorting method may induce only minimal interference to biological species or microorganisms encapsulated inside the droplets that may accompany electrical, optical and magnetic-based techniques.

4D CT sorting based on patient internal anatomy

NASA Astrophysics Data System (ADS)

Li, Ruijiang; Lewis, John H.; Cerviño, Laura I.; Jiang, Steve B.

2009-08-01

Respiratory motion during free-breathing computed tomography (CT) scan may cause significant errors in target definition for tumors in the thorax and upper abdomen. A four-dimensional (4D) CT technique has been widely used for treatment simulation of thoracic and abdominal cancer radiotherapy. The current 4D CT techniques require retrospective sorting of the reconstructed CT slices oversampled at the same couch position. Most sorting methods depend on external surrogates of respiratory motion recorded by extra instruments. However, respiratory signals obtained from these external surrogates may not always accurately represent the internal target motion, especially when irregular breathing patterns occur. We have proposed a new sorting method based on multiple internal anatomical features for multi-slice CT scan acquired in the cine mode. Four features are analyzed in this study, including the air content, lung area, lung density and body area. We use a measure called spatial coherence to select the optimal internal feature at each couch position and to generate the respiratory signals for 4D CT sorting. The proposed method has been evaluated for ten cancer patients (eight with thoracic cancer and two with abdominal cancer). For nine patients, the respiratory signals generated from the combined internal features are well correlated to those from external surrogates recorded by the real-time position management (RPM) system (average correlation: 0.95 ± 0.02), which is better than any individual internal measures at 95% confidence level. For these nine patients, the 4D CT images sorted by the combined internal features are almost identical to those sorted by the RPM signal. For one patient with an irregular breathing pattern, the respiratory signals given by the combined internal features do not correlate well with those from RPM (correlation: 0.68 ± 0.42). In this case, the 4D CT image sorted by our method presents fewer artifacts than that from the RPM signal. Our 4D CT internal sorting method eliminates the need of externally recorded surrogates of respiratory motion. It is an automatic, accurate, robust, cost efficient and yet simple method and therefore can be readily implemented in clinical settings.

Noise-robust unsupervised spike sorting based on discriminative subspace learning with outlier handling.

PubMed

Keshtkaran, Mohammad Reza; Yang, Zhi

2017-06-01

Spike sorting is a fundamental preprocessing step for many neuroscience studies which rely on the analysis of spike trains. Most of the feature extraction and dimensionality reduction techniques that have been used for spike sorting give a projection subspace which is not necessarily the most discriminative one. Therefore, the clusters which appear inherently separable in some discriminative subspace may overlap if projected using conventional feature extraction approaches leading to a poor sorting accuracy especially when the noise level is high. In this paper, we propose a noise-robust and unsupervised spike sorting algorithm based on learning discriminative spike features for clustering. The proposed algorithm uses discriminative subspace learning to extract low dimensional and most discriminative features from the spike waveforms and perform clustering with automatic detection of the number of the clusters. The core part of the algorithm involves iterative subspace selection using linear discriminant analysis and clustering using Gaussian mixture model with outlier detection. A statistical test in the discriminative subspace is proposed to automatically detect the number of the clusters. Comparative results on publicly available simulated and real in vivo datasets demonstrate that our algorithm achieves substantially improved cluster distinction leading to higher sorting accuracy and more reliable detection of clusters which are highly overlapping and not detectable using conventional feature extraction techniques such as principal component analysis or wavelets. By providing more accurate information about the activity of more number of individual neurons with high robustness to neural noise and outliers, the proposed unsupervised spike sorting algorithm facilitates more detailed and accurate analysis of single- and multi-unit activities in neuroscience and brain machine interface studies.

Noise-robust unsupervised spike sorting based on discriminative subspace learning with outlier handling

NASA Astrophysics Data System (ADS)

Keshtkaran, Mohammad Reza; Yang, Zhi

2017-06-01

Objective. Spike sorting is a fundamental preprocessing step for many neuroscience studies which rely on the analysis of spike trains. Most of the feature extraction and dimensionality reduction techniques that have been used for spike sorting give a projection subspace which is not necessarily the most discriminative one. Therefore, the clusters which appear inherently separable in some discriminative subspace may overlap if projected using conventional feature extraction approaches leading to a poor sorting accuracy especially when the noise level is high. In this paper, we propose a noise-robust and unsupervised spike sorting algorithm based on learning discriminative spike features for clustering. Approach. The proposed algorithm uses discriminative subspace learning to extract low dimensional and most discriminative features from the spike waveforms and perform clustering with automatic detection of the number of the clusters. The core part of the algorithm involves iterative subspace selection using linear discriminant analysis and clustering using Gaussian mixture model with outlier detection. A statistical test in the discriminative subspace is proposed to automatically detect the number of the clusters. Main results. Comparative results on publicly available simulated and real in vivo datasets demonstrate that our algorithm achieves substantially improved cluster distinction leading to higher sorting accuracy and more reliable detection of clusters which are highly overlapping and not detectable using conventional feature extraction techniques such as principal component analysis or wavelets. Significance. By providing more accurate information about the activity of more number of individual neurons with high robustness to neural noise and outliers, the proposed unsupervised spike sorting algorithm facilitates more detailed and accurate analysis of single- and multi-unit activities in neuroscience and brain machine interface studies.

Fluorescence-Activated Cell Sorting of Live Versus Dead Bacterial Cells and Spores

NASA Technical Reports Server (NTRS)

Bernardini, James N.; LaDuc, Myron T.; Diamond, Rochelle; Verceles, Josh

2012-01-01

This innovation is a coupled fluorescence-activated cell sorting (FACS) and fluorescent staining technology for purifying (removing cells from sampling matrices), separating (based on size, density, morphology, and live versus dead), and concentrating cells (spores, prokaryotic, eukaryotic) from an environmental sample.

Design and analysis on sorting blade for automated size-based sorting device

NASA Astrophysics Data System (ADS)

Razali, Zol Bahri; Kader, Mohamed Mydin M. Abdul; Samsudin, Yasser Suhaimi; Daud, Mohd Hisam

2017-09-01

Nowadays rubbish separating or recycling is a main problem of nation, where peoples dumped their rubbish into dumpsite without caring the value of the rubbish if it can be recycled and reused. Thus the author proposed an automated segregating device, purposely to teach people to separate their rubbish and value the rubbish that can be reused. The automated size-based mechanical segregating device provides significant improvements in terms of efficiency and consistency in this segregating process. This device is designed to make recycling easier, user friendly, in the hope that more people will take responsibility if it is less of an expense of time and effort. This paper discussed about redesign a blade for the sorting device which is to develop an efficient automated mechanical sorting device for the similar material but in different size. The machine is able to identify the size of waste and it depends to the coil inside the container to separate it out. The detail design and methodology is described in detail in this paper.

Raman-Activated Droplet Sorting (RADS) for Label-Free High-Throughput Screening of Microalgal Single-Cells.

PubMed

Wang, Xixian; Ren, Lihui; Su, Yetian; Ji, Yuetong; Liu, Yaoping; Li, Chunyu; Li, Xunrong; Zhang, Yi; Wang, Wei; Hu, Qiang; Han, Danxiang; Xu, Jian; Ma, Bo

2017-11-21

Raman-activated cell sorting (RACS) has attracted increasing interest, yet throughput remains one major factor limiting its broader application. Here we present an integrated Raman-activated droplet sorting (RADS) microfluidic system for functional screening of live cells in a label-free and high-throughput manner, by employing AXT-synthetic industrial microalga Haematococcus pluvialis (H. pluvialis) as a model. Raman microspectroscopy analysis of individual cells is carried out prior to their microdroplet encapsulation, which is then directly coupled to DEP-based droplet sorting. To validate the system, H. pluvialis cells containing different levels of AXT were mixed and underwent RADS. Those AXT-hyperproducing cells were sorted with an accuracy of 98.3%, an enrichment ratio of eight folds, and a throughput of ∼260 cells/min. Of the RADS-sorted cells, 92.7% remained alive and able to proliferate, which is equivalent to the unsorted cells. Thus, the RADS achieves a much higher throughput than existing RACS systems, preserves the vitality of cells, and facilitates seamless coupling with downstream manipulations such as single-cell sequencing and cultivation.

Methods of analysis by the U.S. Geological Survey National Water Quality Laboratory; processing, taxonomy, and quality control of benthic macroinvertebrate samples

USGS Publications Warehouse

Moulton, Stephen R.; Carter, James L.; Grotheer, Scott A.; Cuffney, Thomas F.; Short, Terry M.

2000-01-01

Qualitative and quantitative methods to process benthic macroinvertebrate (BMI) samples have been developed and tested by the U.S. Geological Survey?s National Water Quality Laboratory Biological Group. The qualitative processing method is based on visually sorting a sample for up to 2 hours. Sorting focuses on attaining organisms that are likely to result in taxonomic identifications to lower taxonomic levels (for example, Genus or Species). Immature and damaged organisms are also sorted when they are likely to result in unique determinations. The sorted sample remnant is scanned briefly by a second person to determine if obvious taxa were missed. The quantitative processing method is based on a fixed-count approach that targets some minimum count, such as 100 or 300 organisms. Organisms are sorted from randomly selected 5.1- by 5.1-centimeter parts of a gridded subsampling frame. The sorted remnant from each sample is resorted by a second individual for at least 10 percent of the original sort time. A large-rare organism search is performed on the unsorted remnant to sort BMI taxa that were not likely represented in the sorted grids. After either qualitatively or quantitatively sorting the sample, BMIs are identified by using one of three different types of taxonomic assessment. The Standard Taxonomic Assessment is comparable to the U.S. Environmental Protection Agency Rapid Bioassessment Protocol III and typically provides Genus- or Species-level taxonomic resolution. The Rapid Taxonomic Assessment is comparable to the U.S. Environmental Protection Agency Rapid Bioassessment Protocol II and provides Familylevel and higher taxonomic resolution. The Custom Taxonomic Assessment provides Species-level resolution whenever possible for groups identified to higher taxonomic levels by using the Standard Taxonomic Assessment. The consistent use of standardized designations and notes facilitates the interpretation of BMI data within and among water-quality studies. Taxonomic identifications are quality assured by verifying all referenced taxa and randomly reviewing 10 percent of the taxonomic identifications performed weekly by Biological Group taxonomists. Taxonomic errors discovered during this review are corrected. BMI data are reviewed for accuracy and completeness prior to release. BMI data are released phylogenetically in spreadsheet format and unprocessed abundances are corrected for laboratory and field subsampling when necessary.

The duration of time that beef cattle are fed a high-grain diet affects feed sorting behavior both before and after acute ruminal acidosis1,2.

PubMed

DeVries, T J; Schwaiger, T; Beauchemin, K A; Penner, G B

2014-04-01

The objective of this study was to determine how duration of time that cattle are fed a high-grain diet affects feed sorting, both before and after an episode of acute ruminal acidosis. Sixteen Angus heifers (261 ± 6.1 kg; BW ± SEM) were assigned to 1 of 4 blocks and fed a backgrounding (BG) diet (60% forage, DM basis). Within block, heifers were randomly assigned to 1 of 2 treatments differing in days fed a high-grain (HG; 9% forage, DM basis, fed ad libitum) diet before a ruminal acidosis challenge: 34 d for long adapted (LA) and 8 d for short adapted (SA). Ruminal acidosis was induced by restricting feed to 50% of DMI as a proportion of BW (determined individually for each heifer) for 24 h followed by an intraruminal infusion of ground barley at 10% of DMI as a proportion of BW measured before feed restriction. Feed and orts were sampled during the BG period, the first 26 d on the HG diet (only for LA cattle), the 8-d baseline (BASE) period, on the day of the ruminal acidosis challenge (CH), and during 2 consecutive 8-d recovery periods (REC1 and REC2) for each heifer and subjected to particle size analysis: 19-mm (long), 8-mm (medium), and 1.18-mm (short) screens and a pan (fine). On the BG diet, sorting for medium particles tended to be greater (104.2 vs. 102.1%; P = 0.07) for LA heifers than SA heifers, while sorting against short particles was greater (98.2 vs. 100.0%; P = 0.05) for LA heifers. During the first 26 d on the HG diet, LA cattle sorted for (P < 0.001) long (118.8%), medium (117.8%), and short (104.1%) particles and sorted against (P < 0.001) fine particles (45.3%). This sorting pattern was consistent for LA heifers during BASE period, CH day, and recovery periods, across which SA heifers exhibited less sorting (P ≤ 0.1). Greater duration of pH < 5.5 during the BASE period was associated with greater sorting for long particles (R(2) = 0.75, P = 0.01) in LA heifers and for long (R(2) = 0.49, P = 0.05) and medium (R(2) = 0.88, P < 0.001) particles in SA heifers. Long-adapted heifers linearly increased the extent of sorting for long (P = 0.007) and medium (P < 0.001) particles and against fine particles (P = 0.05) during the days following the challenge to a greater extent than SA heifers. Overall, the results demonstrate that longer-term exposure of beef heifers to a HG diet, which caused persistent low rumen pH, influenced feed sorting of heifers, both before and after an induced bout of acute ruminal acidosis, in a manner that would help attenuate the effects of acidosis.

A degradation-based sorting method for lithium-ion battery reuse

PubMed Central

Chen, Hao

2017-01-01

In a world where millions of people are dependent on batteries to provide them with convenient and portable energy, battery recycling is of the utmost importance. In this paper, we developed a new method to sort 18650 Lithium-ion batteries in large quantities and in real time for harvesting used cells with enough capacity for battery reuse. Internal resistance and capacity tests were conducted as a basis for comparison with a novel degradation-based method based on X-ray radiographic scanning and digital image contrast computation. The test results indicate that the sorting accuracy of the test cells is about 79% and the execution time of our algorithm is at a level of 200 milliseconds, making our method a potential real-time solution for reusing the remaining capacity in good used cells. PMID:29023485

Diagenetic history of the Surma Group sandstones (Miocene) in the Surma Basin, Bangladesh

NASA Astrophysics Data System (ADS)

Rahman, M. Julleh Jalalur; McCann, Tom

2012-02-01

This study examines the various diagenetic controls of the Miocene Surma Group sandstones encountered in petroleum exploration wells from the Surma Basin, which is situated in the northeastern part of the Bengal Basin, Bangladesh. The principal diagenetic minerals/cements in the Surma Group sandstones are Fe-carbonates (with Fe-calcite dominating), quartz overgrowths and authigenic clays (predominantly chlorite, illite-smectite and minor kaolin). The isotopic composition of the carbonate cement revealed a narrow range of δ 18O values (-10.3‰ to -12.4‰) and a wide range of δ 13C value (+1.4‰ to -23.1‰). The δ 13C VPDB and δ 18O VPDB values of the carbonate cements reveal that carbon was most likely derived from the thermal maturation of organic matter during burial, as well as from the dissolution of isolated carbonate clasts and precipitated from mixed marine-meteoric pore waters. The relationship between the intergranular volume (IGV) versus cement volume indicates that compaction played a more significant role than cementation in destroying the primary porosity. However, cementation also played a major role in drastically reducing porosity and permeability in sandstones with poikilotopic, pore-filling blocky cements formed in early to intermediate and deep burial areas. In addition to Fe-carbonate cements, various clay minerals including illite-smectite and chlorite occur as pore-filling and pore-lining authigenic phases. Significant secondary porosity has been generated at depths from 2500 m to 4728 m. The best reservoir rocks found at depths of 2500-3300 m are well sorted, relatively coarse grained; more loosely packed and better rounded sandstones having good porosities (20-30%) and high permeabilities (12-6000 mD). These good quality reservoir rocks are, however, not uniformly distributed and can be considered to be compartmentalized as a result of interbedding with sandstone layers of low to moderate porosities, low permeabilities owing to poor sorting and extensive compaction and cementation.

Impact of respiratory-correlated CT sorting algorithms on the choice of margin definition for free-breathing lung radiotherapy treatments.

PubMed

Thengumpallil, Sheeba; Germond, Jean-François; Bourhis, Jean; Bochud, François; Moeckli, Raphaël

2016-06-01

To investigate the impact of Toshiba phase- and amplitude-sorting algorithms on the margin strategies for free-breathing lung radiotherapy treatments in the presence of breathing variations. 4D CT of a sphere inside a dynamic thorax phantom was acquired. The 4D CT was reconstructed according to the phase- and amplitude-sorting algorithms. The phantom was moved by reproducing amplitude, frequency, and a mix of amplitude and frequency variations. Artefact analysis was performed for Mid-Ventilation and ITV-based strategies on the images reconstructed by phase- and amplitude-sorting algorithms. The target volume deviation was assessed by comparing the target volume acquired during irregular motion to the volume acquired during regular motion. The amplitude-sorting algorithm shows reduced artefacts for only amplitude variations while the phase-sorting algorithm for only frequency variations. For amplitude and frequency variations, both algorithms perform similarly. Most of the artefacts are blurring and incomplete structures. We found larger artefacts and volume differences for the Mid-Ventilation with respect to the ITV strategy, resulting in a higher relative difference of the surface distortion value which ranges between maximum 14.6% and minimum 4.1%. The amplitude- is superior to the phase-sorting algorithm in the reduction of motion artefacts for amplitude variations while phase-sorting for frequency variations. A proper choice of 4D CT sorting algorithm is important in order to reduce motion artefacts, especially if Mid-Ventilation strategy is used. Copyright © 2016 Elsevier Ireland Ltd. All rights reserved.

Differential evolution enhanced with multiobjective sorting-based mutation operators.

PubMed

Wang, Jiahai; Liao, Jianjun; Zhou, Ying; Cai, Yiqiao

2014-12-01

Differential evolution (DE) is a simple and powerful population-based evolutionary algorithm. The salient feature of DE lies in its mutation mechanism. Generally, the parents in the mutation operator of DE are randomly selected from the population. Hence, all vectors are equally likely to be selected as parents without selective pressure at all. Additionally, the diversity information is always ignored. In order to fully exploit the fitness and diversity information of the population, this paper presents a DE framework with multiobjective sorting-based mutation operator. In the proposed mutation operator, individuals in the current population are firstly sorted according to their fitness and diversity contribution by nondominated sorting. Then parents in the mutation operators are proportionally selected according to their rankings based on fitness and diversity, thus, the promising individuals with better fitness and diversity have more opportunity to be selected as parents. Since fitness and diversity information is simultaneously considered for parent selection, a good balance between exploration and exploitation can be achieved. The proposed operator is applied to original DE algorithms, as well as several advanced DE variants. Experimental results on 48 benchmark functions and 12 real-world application problems show that the proposed operator is an effective approach to enhance the performance of most DE algorithms studied.

Spiking Neural Networks Based on OxRAM Synapses for Real-Time Unsupervised Spike Sorting.

PubMed

Werner, Thilo; Vianello, Elisa; Bichler, Olivier; Garbin, Daniele; Cattaert, Daniel; Yvert, Blaise; De Salvo, Barbara; Perniola, Luca

2016-01-01

In this paper, we present an alternative approach to perform spike sorting of complex brain signals based on spiking neural networks (SNN). The proposed architecture is suitable for hardware implementation by using resistive random access memory (RRAM) technology for the implementation of synapses whose low latency (<1μs) enables real-time spike sorting. This offers promising advantages to conventional spike sorting techniques for brain-computer interfaces (BCI) and neural prosthesis applications. Moreover, the ultra-low power consumption of the RRAM synapses of the spiking neural network (nW range) may enable the design of autonomous implantable devices for rehabilitation purposes. We demonstrate an original methodology to use Oxide based RRAM (OxRAM) as easy to program and low energy (<75 pJ) synapses. Synaptic weights are modulated through the application of an online learning strategy inspired by biological Spike Timing Dependent Plasticity. Real spiking data have been recorded both intra- and extracellularly from an in-vitro preparation of the Crayfish sensory-motor system and used for validation of the proposed OxRAM based SNN. This artificial SNN is able to identify, learn, recognize and distinguish between different spike shapes in the input signal with a recognition rate about 90% without any supervision.

High-speed sorting of grains by color and surface texture

USDA-ARS?s Scientific Manuscript database

A high-speed, low-cost, image-based sorting device was developed to detect and separate grains with different colors/textures. The device directly combines a complementary metal–oxide–semiconductor (CMOS) color image sensor with a field-programmable gate array (FPGA) that was programmed to execute ...

Sort entropy-based for the analysis of EEG during anesthesia

NASA Astrophysics Data System (ADS)

Ma, Liang; Huang, Wei-Zhi

2010-08-01

The monitoring of anesthetic depth is an absolutely necessary procedure in the process of surgical operation. To judge and control the depth of anesthesia has become a clinical issue which should be resolved urgently. EEG collected wiil be processed by sort entrop in this paper. Signal response of the surface of the cerebral cortex is determined for different stages of patients in the course of anesthesia. EEG is simulated and analyzed through the fast algorithm of sort entropy. The results show that discipline of phasic changes for EEG is very detected accurately,and it has better noise immunity in detecting the EEG anaesthetized than approximate entropy. In conclusion,the computing of Sort entropy algorithm requires shorter time. It has high efficiency and strong anti-interference.

Protein Sorting Prediction.

PubMed

Nielsen, Henrik

2017-01-01

Many computational methods are available for predicting protein sorting in bacteria. When comparing them, it is important to know that they can be grouped into three fundamentally different approaches: signal-based, global-property-based and homology-based prediction. In this chapter, the strengths and drawbacks of each of these approaches is described through many examples of methods that predict secretion, integration into membranes, or subcellular locations in general. The aim of this chapter is to provide a user-level introduction to the field with a minimum of computational theory.

Co-assembly of Viral Envelope Glycoproteins Regulates Their Polarized Sorting in Neurons

PubMed Central

Mardones, Gonzalo A.; Bonifacino, Juan S.

2014-01-01

Newly synthesized envelope glycoproteins of neuroinvasive viruses can be sorted in a polarized manner to the somatodendritic and/or axonal domains of neurons. Although critical for transneuronal spread of viruses, the molecular determinants and interregulation of this process are largely unknown. We studied the polarized sorting of the attachment (NiV-G) and fusion (NiV-F) glycoproteins of Nipah virus (NiV), a paramyxovirus that causes fatal human encephalitis, in rat hippocampal neurons. When expressed individually, NiV-G exhibited a non-polarized distribution, whereas NiV-F was specifically sorted to the somatodendritic domain. Polarized sorting of NiV-F was dependent on interaction of tyrosine-based signals in its cytosolic tail with the clathrin adaptor complex AP-1. Co-expression of NiV-G with NiV-F abolished somatodendritic sorting of NiV-F due to incorporation of NiV-G•NiV-F complexes into axonal transport carriers. We propose that faster biosynthetic transport of unassembled NiV-F allows for its proteolytic activation in the somatodendritic domain prior to association with NiV-G and axonal delivery of NiV-G•NiV-F complexes. Our study reveals how interactions of viral glycoproteins with the host's transport machinery and between themselves regulate their polarized sorting in neurons. PMID:24831812

Aircraft noise, health, and residential sorting: evidence from two quasi-experiments.

PubMed

Boes, Stefan; Nüesch, Stephan; Stillman, Steven

2013-09-01

We explore two unexpected changes in flight regulations to estimate the causal effect of aircraft noise on health. Detailed measures of noise are linked with longitudinal data on individual health outcomes based on the exact address information. Controlling for individual heterogeneity and spatial sorting into different neighborhoods, we find that aircraft noise significantly increases sleeping problems and headaches. Models that do not control for such heterogeneity and sorting substantially underestimate the negative health effects, which suggests that individuals self-select into residence based on their unobserved sensitivity to noise. Our study demonstrates that the combination of quasi-experimental variation and panel data is very powerful for identifying causal effects in epidemiological field studies. Copyright © 2013 John Wiley & Sons, Ltd.

Contrast Characteristics of the Muscovitic Quartzite from Karelia, Russia - Determining the Possibility of Intensification of the Beneficiation Process

NASA Astrophysics Data System (ADS)

Bubnova, Tatyana; Skamnitskaya, Lubov; Gorbunova, Elena; Chertov, Alexandr

2017-12-01

The use of muscovite is determined by its industrial look and quality. Sheet mica is traditionally used as electrically insulating material. Crushed mica dry or wet grinding and scrap (waste from the production of sheet mica) are used as electrical insulating material (for example, mica paper), filler in the manufacture of various kinds of fillers, grout and paint etc. In addition, today there is a steady demand for micronized muscovite for the production of decorative coatings and cosmetics. On the territory of the Republic of Karelia (Russian Federation) there is a significant number of deposits and occurrences moscoviticarum rocks. Promising target small iron-poor Muscovite is the manifestation of the Eastern Hitware identified in 1999. The average mineral composition of rocks of the productive series: quartz - 10-71%; Muscovite - 8-42%; plagioclase - 1,5-28%; kyanite - 2-13,5%; biotite, and 0.1-8%; ore (pyrite, sphalerite) and 1.5 - 11%. Enrichment of this type of mineral raw materials may be carried out using traditional methods - gravity, magnetic separation, flotation. Textural-structural and mineralogical features, a high degree of secondary changes (thin intergrowths of muscovite with graphite, ferritization, the decrease of the strength characteristics) and the availability of areas and dedicated silicification abundant pyrite mineralization and its vein type significantly impoverish muscovite ore, necessitate the adjustment of technological schemes and modes of enrichment. Possibilities of improvement of processes of pretreatment and subsequent enrichment is possible using the methods of pre-sorting that represent rational and cost-effective alternative to traditional beneficiation processes. To explore the possibility of using the optical methods being preconcentration, experimental study of the contrast of properties of samples of the original ore. The study was carried out on crushed material, graded by size: -10+5; -20+10; -40+20 -60 and+40 mm. the results revealed the main search area colour shades in images of mineral samples in the colour system HLS - grey, brown, bright yellow-orange and purple. The correlation between the colour characteristics of the individual pieces and the content of muscovite. To implement the sort method of photometric separation, the threshold separation can be determined by one of the highlighted areas of the gamut or in their entirety. Next, the sorted ore with the same mineralogical and structural properties can effectively be enriched with gravitational methods. In the complex process of enrichment, it is possible to obtain, in addition to muscovite, quartz and kyanite products, which undoubtedly will increase the output of marketable products.

Detection and isolation of rare cells by 2-step enrichment high-speed flow cytometry/cell sorting and single cell LEAP laser ablation

NASA Astrophysics Data System (ADS)

Zordan, M. D.; Leary, James F.

2011-02-01

The clonal isolation of rare cells, especially cancer and stem cells, in a population is important to the development of improved medical treatment. We have demonstrated that the Laser-Enabled Analysis and Processing (LEAP, Cyntellect Inc., San Diego, CA) instrument can be used to efficiently produce single cell clones by photoablative dilution. Additionally, we have also shown that cells present at low frequencies can be cloned by photoablative dilution after they are pre-enriched by flow cytometry based cell sorting. Circulating tumor cells were modeled by spiking isolated peripheral blood cells with cells from the lung carcinoma cell line A549. Flow cytometry based cell sorting was used to perform an enrichment sort of A549 cells directly into a 384 well plate. Photoablative dilution was performed with the LEAPTM instrument to remove any contaminating cells, and clonally isolate 1 side population cell per well. We were able to isolate and grow single clones of side population cells using this method at greater than 90% efficiency. We have developed a 2 step method that is able to perform the clonal isolation of rare cells based on a medically relevant functional phenotype.

A technique for generating phase-space-based Monte Carlo beamlets in radiotherapy applications.

PubMed

Bush, K; Popescu, I A; Zavgorodni, S

2008-09-21

As radiotherapy treatment planning moves toward Monte Carlo (MC) based dose calculation methods, the MC beamlet is becoming an increasingly common optimization entity. At present, methods used to produce MC beamlets have utilized a particle source model (PSM) approach. In this work we outline the implementation of a phase-space-based approach to MC beamlet generation that is expected to provide greater accuracy in beamlet dose distributions. In this approach a standard BEAMnrc phase space is sorted and divided into beamlets with particles labeled using the inheritable particle history variable. This is achieved with the use of an efficient sorting algorithm, capable of sorting a phase space of any size into the required number of beamlets in only two passes. Sorting a phase space of five million particles can be achieved in less than 8 s on a single-core 2.2 GHz CPU. The beamlets can then be transported separately into a patient CT dataset, producing separate dose distributions (doselets). Methods for doselet normalization and conversion of dose to absolute units of Gy for use in intensity modulated radiation therapy (IMRT) plan optimization are also described.

The rock avalanche of the Mt. Peron (Eastern Alps, Italy): new insights from 36Cl exposure dating

NASA Astrophysics Data System (ADS)

Martin, Silvana; Ivy-ochs, Susan; Alfimov, Vasili; Vockenhuber, %Christof; Surian, Nicola; Campedel, Paolo; Rigo, Manuel; Viganò, Alfio; De Zorzi, Manuel

2016-04-01

In the Late Pleistocene, in the southern side of the Eastern Alps (Veneto region, Italy), when the glacier tongues retreated from the end moraine system areas towards the Dolomitic region, large rock avalanches took place. In the Belluno Valley, occupied by the Piave river, the left side is represented by the Belluno Prealps range, corresponding to the northern flank of a km-scale WSW-ENE oriented alpine syncline formed by rocks from Late Triassic to Late Tertiary in age. The Mt. Peron, belonging to this mountain range, shows its southern lower slope covered by debris cones with scattered boulders and its higher slope, corresponding to the scarp, made of vertical rock strata. At the foot of Mt. Peron, at a distance varying from 500 to 4500 m, there is a 4.5 km2 fan like area delimited by a perimeter of about 15 km. This is a hilly area of poortly sorted, chaotic deposits composed of heterogeneous debris, sandy and silty gravels, angular blocks and very large boulders of carbonatic rocks up to 20 m in diameter. The average thickness of the deposit was estimated to be 80 m, with maximum of 120 m. According to previous works, the main event occurred during the first phases of deglaciation, between 17,000 and 15,000 years BP. Popular stories narrate about two legendary villages destroyed by a mass of stones rolling down in the valley. This is confirmed by archeological findings in the Piave valley which indicate the presence of almost one pre-historic settlement dating 40000-20000 years a B.P., (i.e. before the Last Glacial Maximum).. Recent 36Cl exposure dating have yielded historical ages for both the boulders at the foot of the Mt Peron and those located a few km far from the main scarp. According to these exposure ages we can not exclude the hypothesis that earthquakes related to the Venetian faults could have played a key role for triggering of the rock avalanche and that the main gravitational event took place in historical times rather than during the deglaciation.

Arrested diatreme development: Standing Rocks East, Hopi Buttes, Navajo Nation, USA

NASA Astrophysics Data System (ADS)

Lefebvre, Nathalie S.; White, James D. L.; Kjarsgaard, Bruce A.

2016-01-01

Maar-diatreme volcanoes, defined by their relatively large pyroclastic debris-filled subsurface structures and craters that cut into the pre-eruptive land surface, are typically found in small-volume mafic to ultramafic monogenetic volcanic fields. Diatremes are associated with strong explosions throughout most of their development, focused along feeder dikes and generally attributed to magma-water interaction, or high magmatic volatiles. Detailed mapping of the magnificently exposed Standing Rocks East (SRE) diatreme shows evidence of additional eruptive complexity, and offers new insights into how the plumbing and vent structures of small-volume volcanoes evolve during an eruption. SRE is part of a larger, basanitic volcanic complex that includes several diatremes formed along a series of irregular, offset NW-SE trending dikes exposed 300 m below the pre-eruptive land surface. Its similarly oriented elliptical-shaped diatreme structure comprises predominantly country rock lithic-rich breccia of coarse inhomogeneously mixed wall-rock blocks sourced from above and below the current surface, plus sparse juvenile material. Domains of pyroclastic deposits crosscut the country rock breccia deposits, and the best exposed is the NW massif rising 35 m above the current erosional surface. It represents a cross-section of an evolving crater floor, and comprises matrix-rich lapilli tuff and spatter deposits cut by irregularly distributed dikes, some with very complex textures. The most significant deposit, in terms of volume, is an unbedded lapilli tuff that is poorly sorted and has a well-mixed population of wall-rock and juvenile clast varieties, thus resembling deposits typical of diatremes. It is overlain by and locally intercalated with spatter deposits, and this irregular contact demarcates the base of what was during eruption an uneven, evolving crater floor. The generally massive, variably welded spatter deposits constitute mostly lapilli-sized juvenile clasts with fluidal, folded-over shapes and ropy surfaces, subordinate thermally altered wall-rock and variegated domains of lapilli tuff. SRE shows a progressive transition from fissure to diatreme, and overall evolution from more explosive to weakly explosive eruption styles recorded at the conduit-crater transition. Diatreme development was initiated by deep-quarrying explosive eruptions along a fissure to form the country rock-rich breccia. Only parts of the fissure remained active as magma feeding the highly explosive eruptions along the fissure localized into discrete point sources forming the matrix-rich lapilli tuff deposits. These superimposed deposits record the passage of multiple debris-jets and subvertical fallback from shallow cratering arising from explosions triggered by magma-water interaction at numerous, discrete sites. However, instead of continuing to build a well-formed diatreme, the system switched to weak spattering with intermittent explosive activity and near-surface dike emplacement into the unconsolidated anisotropic, pyroclastic debris of the crater floor. Dominant spatter from strombolian-style bursts accumulated on the topographically varied, evolving unstable syn-eruptive crater floor, and led to local failure and remobilization. This study demonstrates how the combination of fissure behavior and sensitivity of the shallow plumbing system to local conditions during an eruption can lead to a decrease in eruptive footprint within the diatreme structure, and an overall decrease in explosivity resulting in the arrested development of an immature diatreme.

Recent Opportunity Microscopic Imager Results

NASA Astrophysics Data System (ADS)

Herkenhoff, K. E.; Arvidson, R. E.; Jolliff, B. L.; Yingst, R.; Team, A.

2013-12-01

Opportunity arrived at exposures of Endeavour crater rim rocks in August 2011, on a hill dubbed 'Cape York.' These rocks have been the goal of exploration by Opportunity for the past few years because spectral evidence for phyllosilicates was observed at this location in orbital remote sensing data. As Opportunity circum¬navigated Cape York, the Microscopic Imager (MI) was used to examine the fine-scale textures of various soils and rocky outcrops. As reported previously, Opportunity discovered multiple bright linear features along the western periphery of Cape York that have been interpreted as veins of Ca sulfate deposited in fractures within the bedrock of Cape York. Opportunity then explored the northern and eastern sides of Cape York, including the area around 'Matijevic Hill' that shows evidence for phyllosilicates in CRISM data acquired from the Mars Reconnaissance Orbiter. One of the first outcrops examined near Matijevic Hill, dubbed 'Kirkwood,' is dominated by millimeter-size spherules. Unlike the hematite-rich concretions observed by Opportunity on Meridiani Planum, the aggregated 'newberries' in the Kirkwood exposure display internal structure and resistant rims. Compositionally, the spherule-rich rock is very similar to a nearby spherule-poor outcrop dubbed 'Whitewater Lake.' Thus these spherules have a more basalt-like composition compared to the hematite-rich concretions of the Burns Formation. The origin of the Kirkwood outcrop is uncertain, but the setting on the rim of the 22-km diameter Endeavour crater suggests that perhaps impact melting was involved in lapilli formation, possibly followed by mobilization and sorting in the ejecta blanket. Alternatively, the newberries may be diagenetic iron oxide concretions that are less well cemented than the 'blueberries' of the younger sulfate-rich Burns Formation. The Whitewater Lake outcrops contain the phyllosilicate phases observed from orbit, and are the oldest materials yet investigated by Opportunity. The extremely soft bedrock exposed at a Whitewater Lake outcrop target dubbed 'Azilda' is mostly fine-grained, with dispersed 2-5 mm-diameter spherules and resistant veins. This target was easily abraded by the RAT, exposing a sandstone-like texture, but the sorting of grains is difficult to determine at MI resolution. Darker, erosion-resistant veneers, similar to desert varnishes on Earth, appear to record aqueous alteration that post-dates the formation of the Ca sulfate veins; they likely contain the nontronite that is observed by CRISM in this area. The inferred neutral pH and relatively low temperature of the fluids involved in these phases of alteration would have provided a habitable environment for life if it existed on Mars at that time. Because Opportunity can no longer directly sense phyllosilicate mineralogy with the MiniTES or Mössbauer spectrometers, it is focusing on characterizing the chemistry with the APXS and texture with the MI of potential phyllosilicate host rocks. The Athena MI continues to return useful images of Mars that are being used to study the textures of rocks and soils at Endeavour crater. Exploration by Opportunity continues, with the rover approaching 'Solander Point' and more exposures of phyllosilicates detected from orbit; the latest MI results will be presented at the conference.

The Serious Games of Racial Accounting in Schools

ERIC Educational Resources Information Center

Martinez, Martha Irene

2011-01-01

Educational disparities are frequently framed in racial comparisons that are based on data generated by sorting and counting racial subgroups. Our reliance on these data, and the sorting and counting mechanisms entailed therein, is fundamental to debates about racial inequalities. What is largely ignored in achievement gap discourse is how racial…

A Theory-Based Treatment Model for Psychopathy

ERIC Educational Resources Information Center

Wallace, John F.; Newman, Joseph P.

2004-01-01

The most salient characteristic of the psychopath is the propensity to engage in maladaptive and inappropriate behavior of all sorts, including antisocial and criminal actions. Consequently, there is considerable interest--particularly in the field of criminology--in determining what sorts of treatment interventions are likely to be effective in…

Sorting of fungal-damaged white sorghum

USDA-ARS?s Scientific Manuscript database

A high-speed, color image-based sorting machine was modified to separate white sorghum with symptoms of fungal damage. Most of the sorghum tested was typically white, but over 27% of the bulk contained grains with fungal damage of various degrees, from severe to very slight. Grains with slight fun...

A combined emitter threat assessment method based on ICW-RCM

NASA Astrophysics Data System (ADS)

Zhang, Ying; Wang, Hongwei; Guo, Xiaotao; Wang, Yubing

2017-08-01

Considering that the tradition al emitter threat assessment methods are difficult to intuitively reflect the degree of target threaten and the deficiency of real-time and complexity, on the basis of radar chart method(RCM), an algorithm of emitter combined threat assessment based on ICW-RCM (improved combination weighting method, ICW) is proposed. The coarse sorting is integrated with fine sorting in emitter combined threat assessment, sequencing the emitter threat level roughly accordance to radar operation mode, and reducing task priority of the low-threat emitter; On the basis of ICW-RCM, sequencing the same radar operation mode emitter roughly, finally, obtain the results of emitter threat assessment through coarse and fine sorting. Simulation analyses show the correctness and effectiveness of this algorithm. Comparing with classical method of emitter threat assessment based on CW-RCM, the algorithm is visual in image and can work quickly with lower complexity.

ROCK AND SOIL PHYSICAL PROPERTIES AT THE MER GUSEV CRATER AND MERIDIANI PLANUM LANDING SITES

NASA Technical Reports Server (NTRS)

Ming, Douglas W.; Richter, L.; Arvidson, R.; Bell, J.; Cabrol, N.; Gorevan, S.; Greeley, R.; Herkenhoff, K.

2006-01-01

Following the successful landings of both Mars Exploration Rover (MER) vehicles at Gusev Crater and Meridiani Planum, respectively, their Athena suite of instruments is being used to study the geologic history of these two very different landing sites on Mars that had been selected on the basis of showing different types of evidence for aqueous processes in the planet s past. Utilizing the on-board instruments as well as the rovers mobility system, a wide range of physical properties investigations is carried out as well - the subject of this abstract - that provide additional information on the geology and processes at the sites. Results of the mission in general as well as of the physical properties studies thus far greatly exceed expectations in that observations and measurements by both vehicles show a rich variety in materials and processes: the Gusev site in the vicinity of the lander is remarkably flat and generally devoid of large rocks along traverses up to the time of this writing (approx.Sol 50) and suggestive of a deflated surface with generally only thin veneers of bright dust while exhibiting evidence of a widespread occurrence of a crust from cemented fines that has been observed to fail in the form of blocky clods when disturbed by vehicle rolling action; numerous small and shallow depressions - presumably created by impacts - are observed at the site which are infilled with bright, fine-grained material that likewise appears indurated and which was studied by a trenching experiment; small ripple bedforms are scattered across the site and were characterized in terms of particle size distributions. At the Meridiani site, studies so far - up to approx.Sol 33 - have focussed on soils and the rock outcrop encountered within the approx.20 m diameter crater that the spacecraft came to rest in: from a physical properties point of view, a mantle of dark, well-sorted, apparently basaltic sand with small to moderate cohesion has been of interest - and has been studied by a trenching experiment - as well as a fine-grained unit underlying the mantle at least locally within the crater. Rock grindings were accomplished successfully at both sites at the time of this writing, suggesting different strengths of the two targets (the basaltic rock nicknamed Adirondack at Gusev and the Meridiani rock outcrop) in addition to enabling compositional measurements below the original rock surfaces.

Optimized distributed systems achieve significant performance improvement on sorted merging of massive VCF files.

PubMed

Sun, Xiaobo; Gao, Jingjing; Jin, Peng; Eng, Celeste; Burchard, Esteban G; Beaty, Terri H; Ruczinski, Ingo; Mathias, Rasika A; Barnes, Kathleen; Wang, Fusheng; Qin, Zhaohui S

2018-06-01

Sorted merging of genomic data is a common data operation necessary in many sequencing-based studies. It involves sorting and merging genomic data from different subjects by their genomic locations. In particular, merging a large number of variant call format (VCF) files is frequently required in large-scale whole-genome sequencing or whole-exome sequencing projects. Traditional single-machine based methods become increasingly inefficient when processing large numbers of files due to the excessive computation time and Input/Output bottleneck. Distributed systems and more recent cloud-based systems offer an attractive solution. However, carefully designed and optimized workflow patterns and execution plans (schemas) are required to take full advantage of the increased computing power while overcoming bottlenecks to achieve high performance. In this study, we custom-design optimized schemas for three Apache big data platforms, Hadoop (MapReduce), HBase, and Spark, to perform sorted merging of a large number of VCF files. These schemas all adopt the divide-and-conquer strategy to split the merging job into sequential phases/stages consisting of subtasks that are conquered in an ordered, parallel, and bottleneck-free way. In two illustrating examples, we test the performance of our schemas on merging multiple VCF files into either a single TPED or a single VCF file, which are benchmarked with the traditional single/parallel multiway-merge methods, message passing interface (MPI)-based high-performance computing (HPC) implementation, and the popular VCFTools. Our experiments suggest all three schemas either deliver a significant improvement in efficiency or render much better strong and weak scalabilities over traditional methods. Our findings provide generalized scalable schemas for performing sorted merging on genetics and genomics data using these Apache distributed systems.

Optimized distributed systems achieve significant performance improvement on sorted merging of massive VCF files

PubMed Central

Gao, Jingjing; Jin, Peng; Eng, Celeste; Burchard, Esteban G; Beaty, Terri H; Ruczinski, Ingo; Mathias, Rasika A; Barnes, Kathleen; Wang, Fusheng

2018-01-01

Abstract Background Sorted merging of genomic data is a common data operation necessary in many sequencing-based studies. It involves sorting and merging genomic data from different subjects by their genomic locations. In particular, merging a large number of variant call format (VCF) files is frequently required in large-scale whole-genome sequencing or whole-exome sequencing projects. Traditional single-machine based methods become increasingly inefficient when processing large numbers of files due to the excessive computation time and Input/Output bottleneck. Distributed systems and more recent cloud-based systems offer an attractive solution. However, carefully designed and optimized workflow patterns and execution plans (schemas) are required to take full advantage of the increased computing power while overcoming bottlenecks to achieve high performance. Findings In this study, we custom-design optimized schemas for three Apache big data platforms, Hadoop (MapReduce), HBase, and Spark, to perform sorted merging of a large number of VCF files. These schemas all adopt the divide-and-conquer strategy to split the merging job into sequential phases/stages consisting of subtasks that are conquered in an ordered, parallel, and bottleneck-free way. In two illustrating examples, we test the performance of our schemas on merging multiple VCF files into either a single TPED or a single VCF file, which are benchmarked with the traditional single/parallel multiway-merge methods, message passing interface (MPI)–based high-performance computing (HPC) implementation, and the popular VCFTools. Conclusions Our experiments suggest all three schemas either deliver a significant improvement in efficiency or render much better strong and weak scalabilities over traditional methods. Our findings provide generalized scalable schemas for performing sorted merging on genetics and genomics data using these Apache distributed systems. PMID:29762754

Raman tweezers in microfluidic systems for analysis and sorting of living cells

NASA Astrophysics Data System (ADS)

Pilát, Zdeněk.; Ježek, Jan; Kaňka, Jan; Zemánek, Pavel

2014-12-01

We have devised an analytical and sorting system combining optical trapping with Raman spectroscopy in microfluidic environment, dedicated to identification and sorting of biological objects, such as living cells of various unicellular organisms. Our main goal was to create a robust and universal platform for non-destructive and non-contact sorting of micro-objects based on their Raman spectral properties. This approach allowed us to collect spectra containing information about the chemical composition of the objects, such as the presence and composition of pigments, lipids, proteins, or nucleic acids, avoiding artificial chemical probes such as fluorescent markers. The non-destructive nature of this optical analysis and manipulation allowed us to separate individual living cells of our interest in a sterile environment and provided the possibility to cultivate the selected cells for further experiments. We used a mixture of polystyrene micro-particles and algal cells to test and demonstrate the function of our analytical and sorting system. The devised system could find its use in many medical, biotechnological, and biological applications.

Raman tweezers in microfluidic systems for analysis and sorting of living cells

NASA Astrophysics Data System (ADS)

Pilát, Zdenëk; Ježek, Jan; Kaňka, Jan; Zemánek, Pavel

2014-03-01

We have devised an analytical and sorting system combining optical trapping with Raman spectroscopy in microfluidic environment in order to identify and sort biological objects, such as living cells of various prokaryotic and eukaryotic organisms. Our main objective was to create a robust and universal platform for non-contact sorting of microobjects based on their Raman spectral properties. This approach allowed us to collect information about the chemical composition of the objects, such as the presence and composition of lipids, proteins, or nucleic acids without using artificial chemical probes such as fluorescent markers. The non-destructive and non-contact nature of this optical analysis and manipulation allowed us to separate individual living cells of our interest in a sterile environment and provided the possibility to cultivate the selected cells for further experiments. We used differently treated cells of algae to test and demonstrate the function of our analytical and sorting system. The devised system could find its use in many medical, biotechnological, and biological applications.

Evidence for Differential Comminution/Aeolian Sorting and Chemical Weathering of Martian Soils Preserved in Mars Meteorite EET79001

NASA Technical Reports Server (NTRS)

Rao, M. N.; McKay, David S.

2004-01-01

Impact-melt glasses containing Martian atmospheric gases in Mars meteorite EET79001 are formed from Martian soil fines that had undergone meteoroid-comminution and aeolian sorting accompanied by chemical weathering near Mars surface. Using SiO2 and SO3 as proxy for silicates and salts respectively in Mars soils, we find that SiO2 and SO3 correlate negatively with FeO and MgO and positively with Al2O3 and CaO in these glasses, indicating that the mafic and felsic components are depleted and enriched relative to the bulk host (Lith A/B) respectively as in the case of Moon soils. Though the overall pattern of mineral fractionation is similar between the soil fines on Mars and Moon, the magnitudes of the enrichments/depletions differ between these sample-suites because of pervasive aeolian activity on Mars. In addition to this mechanical processing, the Martian soil fines, prior to impact-melting, have undergone acid-sulfate dissolution under oxidizing/reducing conditions. The S03 content in EET79001,507 (Lith B) glass is approx.18% compared to < 2% in EET79001, 506 (Lith A). SiO2 and SO3 negatively correlate with each other in ,507 glasses similar to Pathfinder soils. The positive correlation found between FeO and SO3 in ,507 glasses as well as Pathfinder rocks and soils is consistent with the deposition of ferric-hydroxysulfate on regolith grains in an oxidizing environment. As in the case of Pathfinder soils, the Al 2O3 vs SiO2 positive correlation and FeO VS S102 negative correlation observed in ,507 glasses indicate that SiO2 from the regolith is mobilized as soluble silicic acid at low pH. The large off-set in the end-member FeO abundance ( SO3=0) between Pathfinder soil-free rock and sulfur-free rock in ,507 glass precursors suggests that the soils comprising the ,507 glasses contain much larger proportion of fine-grained Martian soil fraction that registers strong mafic depletion relative to Lith B. This inference is strongly supported by the Al2O3 - SO3 negative correlation observed in both ,507 glasses and pathfinder soils. Furthermore, the flat MgO-SO3 correlation observed in the case of ,507 glasses shows that the solubilized MgSO4 is mobilized by the aqueous solutions leaving behind the rock-residue with approx.2-3% MgO. This value is similar to the approx.2% MgO found for the soil-free rock at the Pathfinder site. The EET79001 ,506 glasses, in contrast, show that Al2O3 and CaO positively correlate with SO3 indicating that Al is precipitated as amorphous hydroxysulfate at relatively high pH. The FeO - SO3 negative correlation observed in ,506 glasses yields an end-member FeO abundance of approx.21% for the sulfur-free rock, which is consistent with the 22% FeO deduced for the Viking soil-free rock. Further, the FeO and MgO negative correlation with S03 observed in ,506 glasses indicates that the divalent Fe and Mg released from ferromagnesian minerals by acid sulfate dissolution are mobilized away from the reaction sites as soluble sulfates under reducing environment. A similar negative correlation between FeO and SO3 and a positive correlation between Al2O3 and SO3 found in Viking soils suggest that they also had undergone acid-sulfate dissolution under relatively reducing conditions.

Flow cytometric sex sorting affects CD4 membrane distribution and binding of exogenous DNA on bovine sperm cells.

PubMed

Domingues, William Borges; da Silveira, Tony Leandro Rezende; Komninou, Eliza Rossi; Monte, Leonardo Garcia; Remião, Mariana Härter; Dellagostin, Odir Antônio; Corcini, Carine Dahl; Varela Junior, Antônio Sergio; Seixas, Fabiana Kömmling; Collares, Tiago; Campos, Vinicius Farias

2017-08-01

Bovine sex-sorted sperm have been commercialized and successfully used for the production of transgenic embryos of the desired sex through the sperm-mediated gene transfer (SMGT) technique. However, sex-sorted sperm show a reduced ability to internalize exogenous DNA. The interaction between sperm cells and the exogenous DNA has been reported in other species to be a CD4-like molecule-dependent process. The flow cytometry-based sex-sorting process subjects the spermatozoa to different stresses causing changes in the cell membrane. The aim of this study was to elucidate the relationship between the redistribution of CD4-like molecules and binding of exogenous DNA to sex-sorted bovine sperm. In the first set of experiments, the membrane phospholipid disorder and the redistribution of the CD4 were evaluated. The second set of experiments was conducted to investigate the effect of CD4 redistribution on the mechanism of binding of exogenous DNA to sperm cells and the efficiency of lipofection in sex-sorted bovine sperm. Sex-sorting procedure increased the membrane phospholipid disorder and induced the redistribution of CD4-like molecules. Both X-sorted and Y-sorted sperm had decreased DNA bound to membrane in comparison with the unsorted sperm; however, the binding of the exogenous DNA was significantly increased with the addition of liposomes. Moreover, we demonstrated that the number of sperm-bound exogenous DNA was decreased when these cells were preincubated with anti-bovine CD4 monoclonal antibody, supporting our hypothesis that CD4-like molecules indeed play a crucial role in the process of exogenous DNA/bovine sperm cells interaction.

Physical Mechanisms Driving Cell Sorting in Hydra.

PubMed

Cochet-Escartin, Olivier; Locke, Tiffany T; Shi, Winnie H; Steele, Robert E; Collins, Eva-Maria S

2017-12-19

Cell sorting, whereby a heterogeneous cell mixture organizes into distinct tissues, is a fundamental patterning process in development. Hydra is a powerful model system for carrying out studies of cell sorting in three dimensions, because of its unique ability to regenerate after complete dissociation into individual cells. The physicists Alfred Gierer and Hans Meinhardt recognized Hydra's self-organizing properties more than 40 years ago. However, what drives cell sorting during regeneration of Hydra from cell aggregates is still debated. Differential motility and differential adhesion have been proposed as driving mechanisms, but the available experimental data are insufficient to distinguish between these two. Here, we answer this longstanding question by using transgenic Hydra expressing fluorescent proteins and a multiscale experimental and numerical approach. By quantifying the kinematics of single cell and whole aggregate behaviors, we show that no differences in cell motility exist among cell types and that sorting dynamics follow a power law with an exponent of ∼0.5. Additionally, we measure the physical properties of separated tissues and quantify their viscosities and surface tensions. Based on our experimental results and numerical simulations, we conclude that tissue interfacial tensions are sufficient to explain cell sorting in aggregates of Hydra cells. Furthermore, we demonstrate that the aggregate's geometry during sorting is key to understanding the sorting dynamics and explains the exponent of the power law behavior. Our results answer the long standing question of the physical mechanisms driving cell sorting in Hydra cell aggregates. In addition, they demonstrate how powerful this organism is for biophysical studies of self-organization and pattern formation. Copyright © 2017 Biophysical Society. Published by Elsevier Inc. All rights reserved.

How to develop a Standard Operating Procedure for sorting unfixed cells

PubMed Central

Schmid, Ingrid

2012-01-01

Written Standard Operating Procedures (SOPs) are an important tool to assure that recurring tasks in a laboratory are performed in a consistent manner. When the procedure covered in the SOP involves a high-risk activity such as sorting unfixed cells using a jet-in-air sorter, safety elements are critical components of the document. The details on sort sample handling, sorter set-up, validation, operation, troubleshooting, and maintenance, personal protective equipment (PPE), and operator training, outlined in the SOP are to be based on careful risk assessment of the procedure. This review provides background information on the hazards associated with sorting of unfixed cells and the process used to arrive at the appropriate combination of facility design, instrument placement, safety equipment, and practices to be followed. PMID:22381383

Comparative environmental evaluation of construction waste management through different waste sorting systems in Hong Kong.

PubMed

Hossain, Md Uzzal; Wu, Zezhou; Poon, Chi Sun

2017-11-01

This study aimed to compare the environmental performance of building construction waste management (CWM) systems in Hong Kong. Life cycle assessment (LCA) approach was applied to evaluate the performance of CWM systems holistically based on primary data collected from two real building construction sites and secondary data obtained from the literature. Different waste recovery rates were applied based on compositions and material flow to assess the influence on the environmental performance of CWM systems. The system boundary includes all stages of the life cycle of building construction waste (including transportation, sorting, public fill or landfill disposal, recovery and reuse, and transformation and valorization into secondary products). A substitutional LCA approach was applied for capturing the environmental gains due to the utilizations of recovered materials. The results showed that the CWM system by using off-site sorting and direct landfilling resulted in significant environmental impacts. However, a considerable net environmental benefit was observed through an on-site sorting system. For example, about 18-30kg CO 2 eq. greenhouse gases (GHGs) emission were induced for managing 1 t of construction waste through off-site sorting and direct landfilling, whereas significant GHGs emission could be potentially avoided (considered as a credit -126 to -182kg CO 2 eq.) for an on-site sorting system due to the higher recycling potential. Although the environmental benefits mainly depend on the waste compositions and their sortability, the analysis conducted in this study can serve as guidelines to design an effective and resource-efficient building CWM system. Copyright © 2017 Elsevier Ltd. All rights reserved.

Comprehensive two-dimensional gas chromatography/time-of-flight mass spectrometry peak sorting algorithm.

PubMed

Oh, Cheolhwan; Huang, Xiaodong; Regnier, Fred E; Buck, Charles; Zhang, Xiang

2008-02-01

We report a novel peak sorting method for the two-dimensional gas chromatography/time-of-flight mass spectrometry (GC x GC/TOF-MS) system. The objective of peak sorting is to recognize peaks from the same metabolite occurring in different samples from thousands of peaks detected in the analytical procedure. The developed algorithm is based on the fact that the chromatographic peaks for a given analyte have similar retention times in all of the chromatograms. Raw instrument data are first processed by ChromaTOF (Leco) software to provide the peak tables. Our algorithm achieves peak sorting by utilizing the first- and second-dimension retention times in the peak tables and the mass spectra generated during the process of electron impact ionization. The algorithm searches the peak tables for the peaks generated by the same type of metabolite using several search criteria. Our software also includes options to eliminate non-target peaks from the sorting results, e.g., peaks of contaminants. The developed software package has been tested using a mixture of standard metabolites and another mixture of standard metabolites spiked into human serum. Manual validation demonstrates high accuracy of peak sorting with this algorithm.

Rock-fall potential in the Yosemite Valley, California

USGS Publications Warehouse

Wieczorek, G.F.; Morrissey, M.M.; Iovine, Giulio; Godt, Jonathan

1999-01-01

We used two methods of estimating rock-fall potential in the Yosemite Valley, California based on (1) physical evidence of previous rock-fall travel, in which the potential extends to the base of the talus, and (2) theoretical potential energy considerations, in which the potential can extend beyond the base of the talus, herein referred to as the rock-fall shadow. Rock falls in the valley commonly range in size from individual boulders of less than 1 m3 to moderate-sized falls with volumes of about 100,000 m3. Larger rock falls exceeding 100,000 m3, referred to as rock avalanches, are considered to be much less likely to occur based on the relatively few prehistoric rock-fall avalanche deposits in the Yosemite Valley. Because the valley has steep walls and is relatively narrow, there are no areas that are absolutely safe from large rock avalanches. The map shows areas of rock-fall potential, but does not predict when or how frequently a rock fall will occur. Consequently, neither the hazard in terms of probability of a rock fall at any specific location, nor the risk to people or facilities to such events can be assessed from this map.

Autism and Attachment: The Attachment Q-Sort

ERIC Educational Resources Information Center

Rutgers, Anna H.; Van Ijzendoorn, Marinus H.; Bakermans-Kranenburg, Marian J.; Swinkels, Sophie H. N.

2007-01-01

Children with autism are able to show secure attachment behaviours to their parents/caregivers. Most studies on attachment in children with autism used a (modified) Strange Situation Procedure (SSP) to examine attachment security. An advantage of the Attachment Q-Sort (AQS) over the SSP is that it can be attuned to the secure-base behaviour of…

Seed availability constrains plant species sorting along a soil fertility gradient

Treesearch

Bryan L. Foster; Erin J. Questad; Cathy D. Collins; Cheryl A. Murphy; Timothy L. Dickson; Val H. Smith

2011-01-01

1. Spatial variation in species composition within and among communities may be caused by deterministic, niche-based species sorting in response to underlying environmental heterogeneity as well as by stochastic factors such as dispersal limitation and variable species pools. An important goal in ecology is to reconcile deterministic and stochastic perspectives of...

TT : a program that implements predictor sort design and analysis

Treesearch

S. P. Verrill; D. W. Green; V. L. Herian

1997-01-01

In studies on wood strength, researchers sometimes replace experimental unit allocation via random sampling with allocation via sorts based on nondestructive measurements of strength predictors such as modulus of elasticity and specific gravity. This report documents TT, a computer program that implements recently published methods to increase the sensitivity of such...

Induction of lateral lumens through disruption of a monoleucine-based basolateral-sorting motif in betacellulin

PubMed Central

Singh, Bhuminder; Bogatcheva, Galina; Starchenko, Alina; Sinnaeve, Justine; Lapierre, Lynne A.; Williams, Janice A.; Goldenring, James R.; Coffey, Robert J.

2015-01-01

ABSTRACT Directed delivery of EGF receptor (EGFR) ligands to the apical or basolateral surface is a crucial regulatory step in the initiation of EGFR signaling in polarized epithelial cells. Herein, we show that the EGFR ligand betacellulin (BTC) is preferentially sorted to the basolateral surface of polarized MDCK cells. By using sequential truncations and site-directed mutagenesis within the BTC cytoplasmic domain, combined with selective cell-surface biotinylation and immunofluorescence, we have uncovered a monoleucine-based basolateral-sorting motif (EExxxL, specifically 156EEMETL161). Disruption of this sorting motif led to equivalent apical and basolateral localization of BTC. Unlike other EGFR ligands, BTC mistrafficking induced formation of lateral lumens in polarized MDCK cells, and this process was significantly attenuated by inhibition of EGFR. Additionally, expression of a cancer-associated somatic BTC mutation (E156K) led to BTC mistrafficking and induced lateral lumens in MDCK cells. Overexpression of BTC, especially mistrafficking forms, increased the growth of MDCK cells. These results uncover a unique role for BTC mistrafficking in promoting epithelial reorganization. PMID:26272915

Application of sperm sorting and associated reproductive technology for wildlife management and conservation.

PubMed

O'Brien, J K; Steinman, K J; Robeck, T R

2009-01-01

Efforts toward the conservation and captive breeding of wildlife can be enhanced by sperm sorting and associated reproductive technologies such as sperm cryopreservation and artificial insemination (AI). Sex ratio management is of particular significance to species which naturally exist in female-dominated social groups. A bias of the sex ratio towards females of these species will greatly assist in maintaining socially cohesive groups and minimizing male-male aggression. Another application of this technology potentially exists for endangered species, as the preferential production of females can enable propagation of those species at a faster rate. The particular assisted reproductive technology (ART) used in conjunction with sperm sorting for the production of offspring is largely determined by the quality and quantity of spermatozoa following sorting and preservation processes. Regardless of the ART selected, breeding decisions involving sex-sorted spermatozoa should be made in conjunction with appropriate genetic management. Zoological-based research on reproductive physiology and assisted reproduction, including sperm sorting, is being conducted on numerous terrestrial and marine mammals. The wildlife species for which the technology has undergone the most advance is the bottlenose dolphin. AI using sex-sorted fresh or frozen-thawed spermatozoa has become a valuable tool for the genetic and reproductive management of captive bottlenose dolphins with six pre-sexed calves, all of the predetermined sex born to date.

A Framework for the Comparative Assessment of Neuronal Spike Sorting Algorithms towards More Accurate Off-Line and On-Line Microelectrode Arrays Data Analysis.

PubMed

Regalia, Giulia; Coelli, Stefania; Biffi, Emilia; Ferrigno, Giancarlo; Pedrocchi, Alessandra

2016-01-01

Neuronal spike sorting algorithms are designed to retrieve neuronal network activity on a single-cell level from extracellular multiunit recordings with Microelectrode Arrays (MEAs). In typical analysis of MEA data, one spike sorting algorithm is applied indiscriminately to all electrode signals. However, this approach neglects the dependency of algorithms' performances on the neuronal signals properties at each channel, which require data-centric methods. Moreover, sorting is commonly performed off-line, which is time and memory consuming and prevents researchers from having an immediate glance at ongoing experiments. The aim of this work is to provide a versatile framework to support the evaluation and comparison of different spike classification algorithms suitable for both off-line and on-line analysis. We incorporated different spike sorting "building blocks" into a Matlab-based software, including 4 feature extraction methods, 3 feature clustering methods, and 1 template matching classifier. The framework was validated by applying different algorithms on simulated and real signals from neuronal cultures coupled to MEAs. Moreover, the system has been proven effective in running on-line analysis on a standard desktop computer, after the selection of the most suitable sorting methods. This work provides a useful and versatile instrument for a supported comparison of different options for spike sorting towards more accurate off-line and on-line MEA data analysis.

A Framework for the Comparative Assessment of Neuronal Spike Sorting Algorithms towards More Accurate Off-Line and On-Line Microelectrode Arrays Data Analysis

PubMed Central

Pedrocchi, Alessandra

2016-01-01

Neuronal spike sorting algorithms are designed to retrieve neuronal network activity on a single-cell level from extracellular multiunit recordings with Microelectrode Arrays (MEAs). In typical analysis of MEA data, one spike sorting algorithm is applied indiscriminately to all electrode signals. However, this approach neglects the dependency of algorithms' performances on the neuronal signals properties at each channel, which require data-centric methods. Moreover, sorting is commonly performed off-line, which is time and memory consuming and prevents researchers from having an immediate glance at ongoing experiments. The aim of this work is to provide a versatile framework to support the evaluation and comparison of different spike classification algorithms suitable for both off-line and on-line analysis. We incorporated different spike sorting “building blocks” into a Matlab-based software, including 4 feature extraction methods, 3 feature clustering methods, and 1 template matching classifier. The framework was validated by applying different algorithms on simulated and real signals from neuronal cultures coupled to MEAs. Moreover, the system has been proven effective in running on-line analysis on a standard desktop computer, after the selection of the most suitable sorting methods. This work provides a useful and versatile instrument for a supported comparison of different options for spike sorting towards more accurate off-line and on-line MEA data analysis. PMID:27239191

Mass, energy and material balances of SRF production process. Part 1: SRF produced from commercial and industrial waste.

PubMed

Nasrullah, Muhammad; Vainikka, Pasi; Hannula, Janne; Hurme, Markku; Kärki, Janne

2014-08-01

This paper presents the mass, energy and material balances of a solid recovered fuel (SRF) production process. The SRF is produced from commercial and industrial waste (C&IW) through mechanical treatment (MT). In this work various streams of material produced in SRF production process are analyzed for their proximate and ultimate analysis. Based on this analysis and composition of process streams their mass, energy and material balances are established for SRF production process. Here mass balance describes the overall mass flow of input waste material in the various output streams, whereas material balance describes the mass flow of components of input waste stream (such as paper and cardboard, wood, plastic (soft), plastic (hard), textile and rubber) in the various output streams of SRF production process. A commercial scale experimental campaign was conducted on an MT waste sorting plant to produce SRF from C&IW. All the process streams (input and output) produced in this MT plant were sampled and treated according to the CEN standard methods for SRF: EN 15442 and EN 15443. The results from the mass balance of SRF production process showed that of the total input C&IW material to MT waste sorting plant, 62% was recovered in the form of SRF, 4% as ferrous metal, 1% as non-ferrous metal and 21% was sorted out as reject material, 11.6% as fine fraction, and 0.4% as heavy fraction. The energy flow balance in various process streams of this SRF production process showed that of the total input energy content of C&IW to MT plant, 75% energy was recovered in the form of SRF, 20% belonged to the reject material stream and rest 5% belonged with the streams of fine fraction and heavy fraction. In the material balances, mass fractions of plastic (soft), plastic (hard), paper and cardboard and wood recovered in the SRF stream were 88%, 70%, 72% and 60% respectively of their input masses to MT plant. A high mass fraction of plastic (PVC), rubber material and non-combustibles (such as stone/rock and glass particles), was found in the reject material stream. Copyright © 2014 Elsevier Ltd. All rights reserved.

An integrated micromechanical large particle in flow sorter (MILPIS)

NASA Astrophysics Data System (ADS)

Fuad, Nurul M.; Skommer, Joanna; Friedrich, Timo; Kaslin, Jan; Wlodkowic, Donald

2015-06-01

At present, the major hurdle to widespread deployment of zebrafish embryo and larvae in large-scale drug development projects is lack of enabling high-throughput analytical platforms. In order to spearhead drug discovery with the use of zebrafish as a model, platforms need to integrate automated pre-test sorting of organisms (to ensure quality control and standardization) and their in-test positioning (suitable for high-content imaging) with modules for flexible drug delivery. The major obstacle hampering sorting of millimetre sized particles such as zebrafish embryos on chip-based devices is their substantial diameter (above one millimetre), mass (above one milligram), which both lead to rapid gravitational-induced sedimentation and high inertial forces. Manual procedures associated with sorting hundreds of embryos are very monotonous and as such prone to significant analytical errors due to operator's fatigue. In this work, we present an innovative design of a micromechanical large particle in-flow sorter (MILPIS) capable of analysing, sorting and dispensing living zebrafish embryos for drug discovery applications. The system consisted of a microfluidic network, revolving micromechanical receptacle actuated by robotic servomotor and opto-electronic sensing module. The prototypes were fabricated in poly(methyl methacrylate) (PMMA) transparent thermoplastic using infrared laser micromachining. Elements of MILPIS were also fabricated in an optically transparent VisiJet resin using 3D stereolithography (SLA) processes (ProJet 7000HD, 3D Systems). The device operation was based on a rapidly revolving miniaturized mechanical receptacle. The latter function was to hold and position individual fish embryos for (i) interrogation, (ii) sorting decision-making and (iii) physical sorting..The system was designed to separate between fertilized (LIVE) and non-fertilized (DEAD) eggs, based on optical transparency using infrared (IR) emitters and receivers embedded in the system. Digital oscilloscope were used to distinguish the diffraction signals from IR sensors when both LIVE and DEAD embryos were flow through in the chip. Image process analysis were also used as detection module to track DEAD embryos as it flowed in the channel.

Online sorting of recovered wood waste by automated XRF-technology: part II. Sorting efficiencies.

PubMed

Hasan, A Rasem; Solo-Gabriele, Helena; Townsend, Timothy

2011-04-01

Sorting of waste wood is an important process practiced at recycling facilities in order to detect and divert contaminants from recycled wood products. Contaminants of concern include arsenic, chromium and copper found in chemically preserved wood. The objective of this research was to evaluate the sorting efficiencies of both treated and untreated parts of the wood waste stream, and metal (As, Cr and Cu) mass recoveries by the use of automated X-ray fluorescence (XRF) systems. A full-scale system was used for experimentation. This unit consisted of an XRF-detection chamber mounted on the top of a conveyor and a pneumatic slide-way diverter which sorted wood into presumed treated and presumed untreated piles. A randomized block design was used to evaluate the operational conveyance parameters of the system, including wood feed rate and conveyor belt speed. Results indicated that online sorting efficiencies of waste wood by XRF technology were high based on number and weight of pieces (70-87% and 75-92% for treated wood and 66-97% and 68-96% for untreated wood, respectively). These sorting efficiencies achieved mass recovery for metals of 81-99% for As, 75-95% for Cu and 82-99% of Cr. The incorrect sorting of wood was attributed almost equally to deficiencies in the detection and conveyance/diversion systems. Even with its deficiencies, the system was capable of producing a recyclable portion that met residential soil quality levels established for Florida, for an infeed that contained 5% of treated wood. Copyright © 2010 Elsevier Ltd. All rights reserved.

A cell sorting and trapping microfluidic device with an interdigital channel

NASA Astrophysics Data System (ADS)

Tu, Jing; Qiao, Yi; Xu, Minghua; Li, Junji; Liang, Fupeng; Duan, Mengqin; Ju, An; Lu, Zuhong

2016-12-01

The growing interest in cell sorting and trapping is driving the demand for high performance technologies. Using labeling techniques or external forces, cells can be identified by a series of methods. However, all of these methods require complicated systems with expensive devices. Based on inherent differences in cellular morphology, cells can be sorted by specific structures in microfluidic devices. The weir filter is a basic and efficient cell sorting and trapping structure. However, in some existing weir devices, because of cell deformability and high flow velocity in gaps, trapped cells may become stuck or even pass through the gaps. Here, we designed and fabricated a microfluidic device with interdigital channels for cell sorting and trapping. The chip consisted of a sheet of silicone elastomer polydimethylsiloxane and a sheet of glass. A square-wave-like weir was designed in the middle of the channel, comprising the interdigital channels. The square-wave pattern extended the weir length by three times with the channel width remaining constant. Compared with a straight weir, this structure exhibited a notably higher trapping capacity. Interdigital channels provided more space to slow down the rate of the pressure decrease, which prevented the cells from becoming stuck in the gaps. Sorting a mixture K562 and blood cells to trap cells demonstrated the efficiency of the chip with the interdigital channel to sort and trap large and less deformable cells. With stable and efficient cell sorting and trapping abilities, the chip with an interdigital channel may be widely applied in scientific research fields.

Size-sensitive sorting of microparticles through control of flow geometry

NASA Astrophysics Data System (ADS)

Wang, Cheng; Jalikop, Shreyas V.; Hilgenfeldt, Sascha

2011-07-01

We demonstrate a general concept of flow manipulation in microfluidic environments, based on controlling the shape and position of flow domains in order to force switching and sorting of microparticles without moving parts or changes in design geometry. Using microbubble acoustic streaming, we show that regulation of the relative strength of streaming and a superimposed Poiseuille flow allows for size-selective trapping and releasing of particles, with particle size sensitivity much greater than what is imposed by the length scales of microfabrication. A simple criterion allows for quantitative tuning of microfluidic devices for switching and sorting of particles of desired size.

New insights into the petrogenesis of the Jameson Range layered intrusion and associated Fe-Ti-P-V-PGE-Au mineralisation, West Musgrave Province, Western Australia

NASA Astrophysics Data System (ADS)

Karykowski, Bartosz T.; Polito, Paul A.; Maier, Wolfgang D.; Gutzmer, Jens; Krause, Joachim

2017-02-01

The Mesoproterozoic Jameson Range intrusion forms part of the Giles Complex, Musgrave Province, Western Australia. It is predominantly mafic in composition comprising olivine-bearing gabbroic lithologies with variable amounts of magnetite and ilmenite. Lithologies containing more than 50 vol% magnetite and ilmenite are classified as magnetitites. The Jameson Range hosts several of these magnetitites forming laterally extensive layers, which can be traced for at least 19 km as continuous magnetic anomalies. Similar occurrences of magnetitites are known from the upper parts of other layered intrusions, such as the Bushveld Complex. In addition, the intrusion hosts several P-rich zones, one of which is at least 59 m in thickness containing 1.0 wt% P2O5. The P-rich zones are not directly associated with the magnetitites, but they mostly occur slightly above them. The mineral chemistry of the Jameson Range cumulates is relatively evolved with olivine compositions ranging from Fo44 to Fo60 and plagioclase compositions varying between An56 and An59. The Mg# (100 × Mg / (Mg + Fe)) of ortho- and clinopyroxene ranges from 60 to 61 and from 70 to 75, respectively. Magnetite compositions are characterised by low TiO2 concentrations varying from 0.39 to 3.04 wt% representing near end-member magnetite with up to 1.2 wt% Cr and 1.3 wt% V, respectively. The basal magnetite layer reaches up to 68.8 wt% Fe2O3(t) and 24.2 wt% TiO2, and it is also markedly enriched in Cu (up to 0.3 wt% Cu), V (up to 1.05 wt% V2O5) and platinum-group elements (PGE) (up to 2 ppm Pt + Pd). Sulphide minerals comprising bornite, chalcopyrite and minor pentlandite occur finely disseminated in the magnetitite and account for the elevated base metal and PGE concentrations. Modelling indicates that the PGE mineralisation was formed at very high R factors of up to 100,000, which is typical for PGE reefs in layered intrusions. Whole rock geochemical and mineralogical data of the magnetite layers and their host rocks further allow for a refinement of current formation models of layered igneous sequences. Several lines of evidence suggest that the magnetite layers formed in response to primarily density-controlled mineral sorting within crystal slurries, although the grain size also affects the sorting process.

The use of Optical Character Recognition (OCR) in the digitisation of herbarium specimen labels.

PubMed

Drinkwater, Robyn E; Cubey, Robert W N; Haston, Elspeth M

2014-01-01

At the Royal Botanic Garden Edinburgh (RBGE) the use of Optical Character Recognition (OCR) to aid the digitisation process has been investigated. This was tested using a herbarium specimen digitisation process with two stages of data entry. Records were initially batch-processed to add data extracted from the OCR text prior to being sorted based on Collector and/or Country. Using images of the specimens, a team of six digitisers then added data to the specimen records. To investigate whether the data from OCR aid the digitisation process, they completed a series of trials which compared the efficiency of data entry between sorted and unsorted batches of specimens. A survey was carried out to explore the opinion of the digitisation staff to the different sorting options. In total 7,200 specimens were processed. When compared to an unsorted, random set of specimens, those which were sorted based on data added from the OCR were quicker to digitise. Of the methods tested here, the most successful in terms of efficiency used a protocol which required entering data into a limited set of fields and where the records were filtered by Collector and Country. The survey and subsequent discussions with the digitisation staff highlighted their preference for working with sorted specimens, in which label layout, locations and handwriting are likely to be similar, and so a familiarity with the Collector or Country is rapidly established.

Solving multi-objective job shop scheduling problems using a non-dominated sorting genetic algorithm

NASA Astrophysics Data System (ADS)

Piroozfard, Hamed; Wong, Kuan Yew

2015-05-01

The efforts of finding optimal schedules for the job shop scheduling problems are highly important for many real-world industrial applications. In this paper, a multi-objective based job shop scheduling problem by simultaneously minimizing makespan and tardiness is taken into account. The problem is considered to be more complex due to the multiple business criteria that must be satisfied. To solve the problem more efficiently and to obtain a set of non-dominated solutions, a meta-heuristic based non-dominated sorting genetic algorithm is presented. In addition, task based representation is used for solution encoding, and tournament selection that is based on rank and crowding distance is applied for offspring selection. Swapping and insertion mutations are employed to increase diversity of population and to perform intensive search. To evaluate the modified non-dominated sorting genetic algorithm, a set of modified benchmarking job shop problems obtained from the OR-Library is used, and the results are considered based on the number of non-dominated solutions and quality of schedules obtained by the algorithm.

Predicting and interpreting identification errors in military vehicle training using multidimensional scaling.

PubMed

Bohil, Corey J; Higgins, Nicholas A; Keebler, Joseph R

2014-01-01

We compared methods for predicting and understanding the source of confusion errors during military vehicle identification training. Participants completed training to identify main battle tanks. They also completed card-sorting and similarity-rating tasks to express their mental representation of resemblance across the set of training items. We expected participants to selectively attend to a subset of vehicle features during these tasks, and we hypothesised that we could predict identification confusion errors based on the outcomes of the card-sort and similarity-rating tasks. Based on card-sorting results, we were able to predict about 45% of observed identification confusions. Based on multidimensional scaling of the similarity-rating data, we could predict more than 80% of identification confusions. These methods also enabled us to infer the dimensions receiving significant attention from each participant. This understanding of mental representation may be crucial in creating personalised training that directs attention to features that are critical for accurate identification. Participants completed military vehicle identification training and testing, along with card-sorting and similarity-rating tasks. The data enabled us to predict up to 84% of identification confusion errors and to understand the mental representation underlying these errors. These methods have potential to improve training and reduce identification errors leading to fratricide.

How to develop a standard operating procedure for sorting unfixed cells.

PubMed

Schmid, Ingrid

2012-07-01

Written standard operating procedures (SOPs) are an important tool to assure that recurring tasks in a laboratory are performed in a consistent manner. When the procedure covered in the SOP involves a high-risk activity such as sorting unfixed cells using a jet-in-air sorter, safety elements are critical components of the document. The details on sort sample handling, sorter set-up, validation, operation, troubleshooting, and maintenance, personal protective equipment (PPE), and operator training, outlined in the SOP are to be based on careful risk assessment of the procedure. This review provides background information on the hazards associated with sorting of unfixed cells and the process used to arrive at the appropriate combination of facility design, instrument placement, safety equipment, and practices to be followed. Copyright © 2012 Elsevier Inc. All rights reserved.

The Relationships between Processing Facial Identity, Emotional Expression, Facial Speech, and Gaze Direction during Development

ERIC Educational Resources Information Center

Spangler, Sibylle M.; Schwarzer, Gudrun; Korell, Monika; Maier-Karius, Johanna

2010-01-01

Four experiments were conducted with 5- to 11-year-olds and adults to investigate whether facial identity, facial speech, emotional expression, and gaze direction are processed independently of or in interaction with one another. In a computer-based, speeded sorting task, participants sorted faces according to facial identity while disregarding…

Exploring Associations of Character Profiles and Out-Of-School Time Activities among Children and Adolescents

ERIC Educational Resources Information Center

Shubert, Jennifer; Metzger, Aaron; Wray-Lake, Laura; Syvertsen, Amy K.

2016-01-01

Conceptualizing character from a relational developmental systems metatheory, this study utilizes a person- oriented approach to examine profiles of character strengths in children and adolescents. Using Q sort methodology, 90 youth (Mage = 13.0, 51% female) sorted 12 character strengths based on how much each strength represented them. Using Q…

Predictor sort sampling, tight t`s, and the analysis of covariance : theory, tables, and examples

Treesearch

S. P. Verrill; D. W. Green

In recent years wood strength researchers have begun to replace experimental unit allocation via random sampling with allocation via sorts based on nondestructive measurements of strength predictors such as modulus of elasticity and specific gravity. Although this procedure has the potential of greatly increasing experimental sensitivity, as currently implemented it...

Quantitative assessment of distance to collection point and improved sorting information on source separation of household waste.

PubMed

Rousta, Kamran; Bolton, Kim; Lundin, Magnus; Dahlén, Lisa

2015-06-01

The present study measures the participation of households in a source separation scheme and, in particular, if the household's application of the scheme improved after two interventions: (a) shorter distance to the drop-off point and (b) easy access to correct sorting information. The effect of these interventions was quantified and, as far as possible, isolated from other factors that can influence the recycling behaviour. The study was based on households located in an urban residential area in Sweden, where waste composition studies were performed before and after the interventions by manual sorting (pick analysis). Statistical analyses of the results indicated a significant decrease (28%) of packaging and newsprint in the residual waste after establishing a property close collection system (intervention (a)), as well as significant decrease (70%) of the miss-sorted fraction in bags intended for food waste after new information stickers were introduced (intervention (b)). Providing a property close collection system to collect more waste fractions as well as finding new communication channels for information about sorting can be used as tools to increase the source separation ratio. This contribution also highlights the need to evaluate the effects of different types of information and communication concerning sorting instructions in a property close collection system. Copyright © 2015 Elsevier Ltd. All rights reserved.

Towards understanding and managing the learning process in mail sorting.

PubMed

Berglund, M; Karltun, A

2012-01-01

This paper was based on case study research at the Swedish Mail Service Division and it addresses learning time to sort mail at new districts and means to support the learning process on an individual as well as organizational level. The study population consisted of 46 postmen and one team leader in the Swedish Mail Service Division. Data were collected through measurements of time for mail sorting, interviews and a focus group. The study showed that learning to sort mail was a much more complex process and took more time than expected by management. Means to support the learning process included clarification of the relationship between sorting and the topology of the district, a good work environment, increased support from colleagues and management, and a thorough introduction for new postmen. The identified means to support the learning process require an integration of human, technological and organizational aspects. The study further showed that increased operations flexibility cannot be reinforced without a systems perspective and thorough knowledge about real work activities and that ergonomists can aid businesses to acquire this knowledge.

High-Throughput, Motility-Based Sorter for Microswimmers and Gene Discovery Platform

NASA Astrophysics Data System (ADS)

Yuan, Jinzhou; Raizen, David; Bau, Haim

2015-11-01

Animal motility varies with genotype, disease progression, aging, and environmental conditions. In many studies, it is desirable to carry out high throughput motility-based sorting to isolate rare animals for, among other things, forward genetic screens to identify genetic pathways that regulate phenotypes of interest. Many commonly used screening processes are labor-intensive, lack sensitivity, and require extensive investigator training. Here, we describe a sensitive, high throughput, automated, motility-based method for sorting nematodes. Our method was implemented in a simple microfluidic device capable of sorting many thousands of animals per hour per module, and is amenable to parallelism. The device successfully enriched for known C. elegans motility mutants. Furthermore, using this device, we isolated low-abundance mutants capable of suppressing the somnogenic effects of the flp-13 gene, which regulates sleep-like quiescence in C. elegans. Subsequent genomic sequencing led to the identification of a flp-13-suppressor gene. This research was supported, in part, by NIH NIA Grant 5R03AG042690-02.

Developments in label-free microfluidic methods for single-cell analysis and sorting.

PubMed

Carey, Thomas R; Cotner, Kristen L; Li, Brian; Sohn, Lydia L

2018-04-24

Advancements in microfluidic technologies have led to the development of many new tools for both the characterization and sorting of single cells without the need for exogenous labels. Label-free microfluidics reduce the preparation time, reagents needed, and cost of conventional methods based on fluorescent or magnetic labels. Furthermore, these devices enable analysis of cell properties such as mechanical phenotype and dielectric parameters that cannot be characterized with traditional labels. Some of the most promising technologies for current and future development toward label-free, single-cell analysis and sorting include electronic sensors such as Coulter counters and electrical impedance cytometry; deformation analysis using optical traps and deformation cytometry; hydrodynamic sorting such as deterministic lateral displacement, inertial focusing, and microvortex trapping; and acoustic sorting using traveling or standing surface acoustic waves. These label-free microfluidic methods have been used to screen, sort, and analyze cells for a wide range of biomedical and clinical applications, including cell cycle monitoring, rapid complete blood counts, cancer diagnosis, metastatic progression monitoring, HIV and parasite detection, circulating tumor cell isolation, and point-of-care diagnostics. Because of the versatility of label-free methods for characterization and sorting, the low-cost nature of microfluidics, and the rapid prototyping capabilities of modern microfabrication, we expect this class of technology to continue to be an area of high research interest going forward. New developments in this field will contribute to the ongoing paradigm shift in cell analysis and sorting technologies toward label-free microfluidic devices, enabling new capabilities in biomedical research tools as well as clinical diagnostics. This article is categorized under: Diagnostic Tools > Biosensing Diagnostic Tools > Diagnostic Nanodevices. © 2018 Wiley Periodicals, Inc.

Rapid discovery of peptide capture candidates with demonstrated specificity for structurally similar toxins

NASA Astrophysics Data System (ADS)

Sarkes, Deborah A.; Hurley, Margaret M.; Coppock, Matthew B.; Farrell, Mikella E.; Pellegrino, Paul M.; Stratis-Cullum, Dimitra N.

2016-05-01

Peptides have emerged as viable alternatives to antibodies for molecular-based sensing due to their similarity in recognition ability despite their relative structural simplicity. Various methods for peptide capture reagent discovery exist, including phage display, yeast display, and bacterial display. One of the primary advantages of peptide discovery by bacterial display technology is the speed to candidate peptide capture agent, due to both rapid growth of bacteria and direct utilization of the sorted cells displaying each individual peptide for the subsequent round of biopanning. We have previously isolated peptide affinity reagents towards protective antigen of Bacillus anthracis using a commercially available automated magnetic sorting platform with improved enrichment as compared to manual magnetic sorting. In this work, we focus on adapting our automated biopanning method to a more challenging sort, to demonstrate the specificity possible with peptide capture agents. This was achieved using non-toxic, recombinant variants of ricin and abrin, RiVax and abrax, respectively, which are structurally similar Type II ribosomal inactivating proteins with significant sequence homology. After only two rounds of biopanning, enrichment of peptide capture candidates binding abrax but not RiVax was achieved as demonstrated by Fluorescence Activated Cell Sorting (FACS) studies. Further sorting optimization included negative sorting against RiVax, proper selection of autoMACS programs for specific sorting rounds, and using freshly made buffer and freshly thawed protein target for each round of biopanning for continued enrichment over all four rounds. Most of the resulting candidates from biopanning for abrax binding peptides were able to bind abrax but not RiVax, demonstrating that short peptide sequences can be highly specific even at this early discovery stage.

Droplet based microfluidics for highthroughput screening of antibody secreting cells

NASA Astrophysics Data System (ADS)

Cai, Liheng; Heyman, John; Mazutis, Linas; Ung, Lloyd; Guerra, Rodrigo; Aubrecht, Donald; Weitz, David

2014-03-01

We present a droplet based microfluidic platform that allows highthroughput screening of antibody secreting cells. We coencapsulate single cells, fluorescent probes, and detection beads into emulsion droplets with diameter of 40 micron. The beads capture antibodies secreted by cells, resulting in a pronounced fluorescent signal that activates dielectrophoresis sorting at rate about 500 droplets per second. Moreover, we demonstrate that Reverse Transcription Polymerase Chain Reaction (RT-PCR) can be successfully applied to the cell encapsulated in a single sorted droplet. Our work highlights the potential of droplet based microfluidics as a platform to generate recombinant antibodies.

Microplate-based high throughput screening procedure for the isolation of lipid-rich marine microalgae

PubMed Central

2011-01-01

We describe a new selection method based on BODIPY (4,4-difluoro-1,3,5,7-tetramethyl-4-bora-3a,4a-diaza-s-indacene) staining, fluorescence activated cell sorting (FACS) and microplate-based isolation of lipid-rich microalgae from an environmental sample. Our results show that direct sorting onto solid medium upon FACS can save about 3 weeks during the scale-up process as compared with the growth of the same cultures in liquid medium. This approach enabled us to isolate a biodiverse collection of several axenic and unialgal cultures of different phyla. PMID:22192119

Microplate-based high throughput screening procedure for the isolation of lipid-rich marine microalgae.

PubMed

Pereira, Hugo; Barreira, Luísa; Mozes, André; Florindo, Cláudia; Polo, Cristina; Duarte, Catarina V; Custódio, Luísa; Varela, João

2011-12-22

We describe a new selection method based on BODIPY (4,4-difluoro-1,3,5,7-tetramethyl-4-bora-3a,4a-diaza-s-indacene) staining, fluorescence activated cell sorting (FACS) and microplate-based isolation of lipid-rich microalgae from an environmental sample. Our results show that direct sorting onto solid medium upon FACS can save about 3 weeks during the scale-up process as compared with the growth of the same cultures in liquid medium. This approach enabled us to isolate a biodiverse collection of several axenic and unialgal cultures of different phyla.

Using Sorting by Reversal: Breakpoint Graph for Gene Assembly in Ciliates

NASA Astrophysics Data System (ADS)

Brijder, Robert; Jan Hoogeboom, Hendrik

2007-09-01

The theory of gene assembly in ciliates has much in common with the theory of sorting by reversal. Both model processes that are based on splicing, and have a fixed begin and end product. The main difference is the type of splicing operations used to obtain the end product from the begin product. In this overview paper we show that the concept of breakpoint graph, known from the theory of sorting by reversal, has many uses in the theory of gene assembly. Our aim is to present the material in an intuitive and informal manner to allow for an efficient introduction into the subject.

The Role of Subsurface Water in Carving Hesperian Amphitheater-Headed Valleys

NASA Astrophysics Data System (ADS)

Lapotre, M. G. A.; Lamb, M. P.

2017-12-01

Groundwater sapping may play a role in valley formation in rare cases on Earth, typically in sand or weakly cemented sandstones. Small-scale valleys resulting from groundwater seepage in loose sand typically have amphitheater-shaped canyon heads with roughly uniform widths. By analogy to terrestrial sapping valleys, Hesperian-aged amphitheater canyons on Mars have been interpreted to result from groundwater sapping, with implications for subsurface and surface water flows on ancient Mars. However, other studies suggest that martian amphitheater canyons carved in fractured rock may instead result from large overland floods, by analogy to dry cataracts in scabland terrains in the northwestern U.S. Understanding the formation of bedrock canyons is critical to our understanding of liquid water reservoirs on ancient Mars. Can groundwater sapping carve canyons in substrates other than sand? There is currently no model to predict the necessary conditions for groundwater to carve canyons in substrates ranging from loose sediment of various sizes to competent rock. To bridge this knowledge gap, we formulate a theoretical model coupling equations of groundwater flow and sediment transport that can be applied to a wide range of substrates. The model is used to infer whether groundwater sapping could have carved canyons in the absence of overland flows, and requires limited inputs that are measureable in the field or from orbital images. Model results show that sapping erosion is capable of forming canyons, but only in loose well-sorted sand. Coarser sediment is more permeable, but more difficult to transport. Finer sediment is more easily transported, but lower permeability precludes the necessary seepage discharge. Finally, fractured rock is highly permeable, but seepage discharges are far below those required to transport typical talus boulders. Using orbiter-based lithological constraints, we conclude that canyons near Echus Chasma are carved into bedrock and therefore required high-discharge overland flow during formation. These results have implications for Hesperian hydrology; while water volumes to carve sapping versus flood canyons need not be significantly different, erosion rates are orders of magnitude faster in the flood scenario, implying brief periods of abundant surface water on Hesperian Mars.

Particle migration and sorting in microbubble streaming flows

PubMed Central

Thameem, Raqeeb; Hilgenfeldt, Sascha

2016-01-01

Ultrasonic driving of semicylindrical microbubbles generates strong streaming flows that are robust over a wide range of driving frequencies. We show that in microchannels, these streaming flow patterns can be combined with Poiseuille flows to achieve two distinctive, highly tunable methods for size-sensitive sorting and trapping of particles much smaller than the bubble itself. This method allows higher throughput than typical passive sorting techniques, since it does not require the inclusion of device features on the order of the particle size. We propose a simple mechanism, based on channel and flow geometry, which reliably describes and predicts the sorting behavior observed in experiment. It is also shown that an asymptotic theory that incorporates the device geometry and superimposed channel flow accurately models key flow features such as peak speeds and particle trajectories, provided it is appropriately modified to account for 3D effects caused by the axial confinement of the bubble. PMID:26958103

GRS evidence and the possibility of paleooceans on Mars

USGS Publications Warehouse

Dohm, J.M.; Baker, V.R.; Boynton, W.V.; Fairen, A.G.; Ferris, J.C.; Finch, M.; Furfaro, R.; Hare, T.M.; Janes, D.M.; Kargel, J.S.; Karunatillake, S.; Keller, J.; Kerry, K.; Kim, K.J.; Komatsu, G.; Mahaney, W.C.; Schulze-Makuch, D.; Marinangeli, L.; Ori, G.G.; Ruiz, J.; Wheelock, S.J.

2009-01-01

The Gamma Ray Spectrometer (Mars Odyssey spacecraft) has revealed elemental distributions of potassium (K), thorium (Th), and iron (Fe) on Mars that require fractionation of K (and possibly Th and Fe) consistent with aqueous activity. This includes weathering, evolution of soils, and transport, sorting, and deposition, as well as with the location of first-order geomorphological demarcations identified as possible paleoocean boundaries. The element abundances occur in patterns consistent with weathering in situ and possible presence of relict or exhumed paleosols, deposition of weathered materials (salts and clastic minerals), and weathering/transport under neutral to acidic brines. The abundances are explained by hydrogeology consistent with the possibly overlapping alternatives of paleooceans and/or heterogeneous rock compositions from diverse provenances (e.g., differing igneous compositions). ?? 2008 Elsevier Ltd.

Durango delta: Complications on San Juan basin Cretaceous linear strandline theme

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zech, R.S.; Wright, R.

1989-09-01

The Upper Cretaceous Point Lookout Sandstone generally conforms to a predictable cyclic shoreface model in which prograding linear strandline lithosomes dominate formation architecture. Multiple transgressive-regressive cycles results in systematic repetition of lithologies deposited in beach to inner shelf environments. Deposits of approximately five cycles are locally grouped into bundles. Such bundles extend at least 20 km along depositional strike and change from foreshore sandstone to offshore, time-equivalent Mancos mud rock in a downdip distance of 17 to 20 km. Excellent hydrocarbon reservoirs exist where well-sorted shoreface sandstone bundles stack and the formation thickens. This depositional model breaks down in themore » vicinity of Durango, Colorado, where a fluvial-dominated delta front and associated large distributary channels characterize the Point Lookout Sandstone and overlying Menefee Formation.« less

The Dynamics of Development on the Dimensional Change Card Sorting Task

ERIC Educational Resources Information Center

van Bers, Bianca M. C. W.; Visser, Ingmar; van Schijndel, Tessa J. P.; Mandell, Dorothy J.; Raijmakers, Maartje E. J.

2011-01-01

A widely used paradigm to study cognitive flexibility in preschoolers is the Dimensional Change Card Sorting (DCCS) task. The developmental dynamics of DCCS performance was studied in a cross-sectional design (N = 93, 3 to 5 years of age) using a computerized version of the standard DCCS task. A model-based analysis of the data showed that…

Sorting in the Labor Market: Do Gregarious Workers Flock to Interactive Jobs?

ERIC Educational Resources Information Center

Krueger, Alan B.; Schkade, David

2008-01-01

This paper tests a central implication of the theory of equalizing differences, that workers sort into jobs with different attributes based on their preferences. We present evidence from four new time-use data sets for the United States and France suggesting that workers who are more gregarious, as revealed by their behavior when they are not…

Age Differences in Perseveration: Cognitive and Neuroanatomical Mediators of Performance on the Wisconsin Card Sorting Test

ERIC Educational Resources Information Center

Head, Denise; Kennedy, Kristen M.; Rodrigue, Karen M.; Raz, Naftali

2009-01-01

Aging effects on the Wisconsin Card Sorting Test (WCST) are fairly well established but the mechanisms of the decline are not clearly understood. In this study, we examined the cognitive and neural mechanisms mediating age-related increases in perseveration on the WCST. MRI-based volumetry and measures of selected executive functions in…

A Task Type for Measuring the Representational Component of Quantitative Proficiency. GRE Board Professional Report No. 92-05P.

ERIC Educational Resources Information Center

Bennett, Randy Elliot; And Others

Two computer-based categorization tasks were developed and pilot tested. In study 1, the task asked examinees to sort mathematical word problem stems according to prototypes. Results with 9 faculty members and 107 undergraduates showed that those who sorted well tended to have higher Graduate Record Examination General Test scores and college…

Single-cell analysis and sorting using droplet-based microfluidics.

PubMed

Mazutis, Linas; Gilbert, John; Ung, W Lloyd; Weitz, David A; Griffiths, Andrew D; Heyman, John A

2013-05-01

We present a droplet-based microfluidics protocol for high-throughput analysis and sorting of single cells. Compartmentalization of single cells in droplets enables the analysis of proteins released from or secreted by cells, thereby overcoming one of the major limitations of traditional flow cytometry and fluorescence-activated cell sorting. As an example of this approach, we detail a binding assay for detecting antibodies secreted from single mouse hybridoma cells. Secreted antibodies are detected after only 15 min by co-compartmentalizing single mouse hybridoma cells, a fluorescent probe and single beads coated with anti-mouse IgG antibodies in 50-pl droplets. The beads capture the secreted antibodies and, when the captured antibodies bind to the probe, the fluorescence becomes localized on the beads, generating a clearly distinguishable fluorescence signal that enables droplet sorting at ∼200 Hz as well as cell enrichment. The microfluidic system described is easily adapted for screening other intracellular, cell-surface or secreted proteins and for quantifying catalytic or regulatory activities. In order to screen ∼1 million cells, the microfluidic operations require 2-6 h; the entire process, including preparation of microfluidic devices and mammalian cells, requires 5-7 d.

Self-sorted photoconductive xerogels† †Electronic supplementary information (ESI) available: Full experimental details, rheological data, pK a titrations, further NMR data, full details of the photoconductivity set-up, further photoconductivity measurements. See DOI: 10.1039/c6sc02644c Click here for additional data file.

PubMed Central

Draper, Emily R.; Lee, Jonathan R.; Wallace, Matthew; Jäckel, Frank; Cowan, Alexander J.

2016-01-01

We show that a perylene bisimide (PBI)-based gelator forms self-sorted mixtures with a stilbene-based gelator. To form the self-sorted gels, we use a slow pH change induced by the hydrolysis of glucono-δ-lactone (GdL) to gluconic acid. We prove that self-sorting occurs using NMR spectroscopy, UV-Vis spectroscopy, rheology, and viscometry. The corresponding xerogels are photoconductive. Importantly, the wavelength dependence of the photoconductive films is different to that of the films formed from the perylene bisimide alone. Transient absorption spectroscopy of the xerogels reveals changes in the spectrum of the PBI on the picosecond timescale in the presence of stilbene with a PBI radical anion being formed within 10 ps when the stilbene is present. The ability to form the PBI radical anion under visible light leads to the enhanced spectral response of the multicomponent gels. These systems therefore have potential as useful visible-active optoelectronics. PMID:28451108

Single-cell analysis and sorting using droplet-based microfluidics

PubMed Central

Mazutis, Linas; Gilbert, John; Ung, W Lloyd; Weitz, David A; Griffiths, Andrew D; Heyman, John A

2014-01-01

We present a droplet-based microfluidics protocol for high-throughput analysis and sorting of single cells. compartmentalization of single cells in droplets enables the analysis of proteins released from or secreted by cells, thereby overcoming one of the major limitations of traditional flow cytometry and fluorescence-activated cell sorting. as an example of this approach, we detail a binding assay for detecting antibodies secreted from single mouse hybridoma cells. secreted antibodies are detected after only 15 min by co-compartmentalizing single mouse hybridoma cells, a fluorescent probe and single beads coated with anti-mouse IgG antibodies in 50-pl droplets. the beads capture the secreted antibodies and, when the captured antibodies bind to the probe, the fluorescence becomes localized on the beads, generating a clearly distinguishable fluorescence signal that enables droplet sorting at ~200 Hz as well as cell enrichment. the microfluidic system described is easily adapted for screening other intracellular, cell-surface or secreted proteins and for quantifying catalytic or regulatory activities. In order to screen ~1 million cells, the microfluidic operations require 2–6 h; the entire process, including preparation of microfluidic devices and mammalian cells, requires 5–7 d. PMID:23558786

Card sorting to evaluate the robustness of the information architecture of a protocol website.

PubMed

Wentzel, J; Müller, F; Beerlage-de Jong, N; van Gemert-Pijnen, J

2016-02-01

A website on Methicillin-Resistant Staphylococcus Aureus, MRSA-net, was developed for Health Care Workers (HCWs) and the general public, in German and in Dutch. The website's content was based on existing protocols and its structure was based on a card sort study. A Human Centered Design approach was applied to ensure a match between user and technology. In the current study we assess whether the website's structure still matches user needs, again via a card sort study. An open card sort study was conducted. Randomly drawn samples of 100 on-site search queries as they were entered on the MRSA-net website (during one year of use) were used as card input. In individual sessions, the cards were sorted by each participant (18 German and 10 Dutch HCWs, and 10 German and 10 Dutch members of the general public) into piles that were meaningful to them. Each participant provided a label for every pile of cards they created. Cluster analysis was performed on the resulting sorts, creating an overview of clusters of items placed together in one pile most frequently. In addition, pile labels were qualitatively analyzed to identify the participants' mental models. Cluster analysis confirmed existing categories and revealed new themes emerging from the search query samples, such as financial issues and consequences for the patient. Even though MRSA-net addresses these topics, they are not prominently covered in the menu structure. The label analysis shows that 7 of a total of 44 MRSA-net categories were not reproduced by the participants. Additional themes such as information on other pathogens and categories such as legal issues emerged. This study shows that the card sort performed to create MRSA-net resulted in overall long-lasting structure and categories. New categories were identified, indicating that additional information needs emerged. Therefore, evaluating website structure should be a recurrent activity. Card sorting with ecological data as input for the cards is useful to identify changes in needs and mental models. By combining qualitative and quantitative analysis we gained insight into additional information needed by the target group, including their view on the domain and related themes. The results show differences between the four user groups in their sorts, which can mostly be explained by the groups' background. These findings confirm that HCD is a valuable approach to tailor information to the target group. Copyright © 2015 Elsevier Ireland Ltd. All rights reserved.

The use of Optical Character Recognition (OCR) in the digitisation of herbarium specimen labels

PubMed Central

Drinkwater, Robyn E.; Cubey, Robert W. N.; Haston, Elspeth M.

2014-01-01

Abstract At the Royal Botanic Garden Edinburgh (RBGE) the use of Optical Character Recognition (OCR) to aid the digitisation process has been investigated. This was tested using a herbarium specimen digitisation process with two stages of data entry. Records were initially batch-processed to add data extracted from the OCR text prior to being sorted based on Collector and/or Country. Using images of the specimens, a team of six digitisers then added data to the specimen records. To investigate whether the data from OCR aid the digitisation process, they completed a series of trials which compared the efficiency of data entry between sorted and unsorted batches of specimens. A survey was carried out to explore the opinion of the digitisation staff to the different sorting options. In total 7,200 specimens were processed. When compared to an unsorted, random set of specimens, those which were sorted based on data added from the OCR were quicker to digitise. Of the methods tested here, the most successful in terms of efficiency used a protocol which required entering data into a limited set of fields and where the records were filtered by Collector and Country. The survey and subsequent discussions with the digitisation staff highlighted their preference for working with sorted specimens, in which label layout, locations and handwriting are likely to be similar, and so a familiarity with the Collector or Country is rapidly established. PMID:25009435

Differential recognition of a dileucine-based sorting signal by AP-1 and AP-3 reveals a requirement for both BLOC-1 and AP-3 in delivery of OCA2 to melanosomes

PubMed Central

Sitaram, Anand; Dennis, Megan K.; Chaudhuri, Rittik; De Jesus-Rojas, Wilfredo; Tenza, Danièle; Setty, Subba Rao Gangi; Wood, Christopher S.; Sviderskaya, Elena V.; Bennett, Dorothy C.; Raposo, Graça; Bonifacino, Juan S.; Marks, Michael S.

2012-01-01

Cell types that generate unique lysosome-related organelles (LROs), such as melanosomes in melanocytes, populate nascent LROs with cargoes that are diverted from endosomes. Cargo sorting toward melanosomes correlates with binding via cytoplasmically exposed sorting signals to either heterotetrameric adaptor AP-1 or AP-3. Some cargoes bind both adaptors, but the relative contribution of each adaptor to cargo recognition and their functional interactions with other effectors during transport to melanosomes are not clear. Here we exploit targeted mutagenesis of the acidic dileucine–based sorting signal in the pigment cell–specific protein OCA2 to dissect the relative roles of AP-1 and AP-3 in transport to melanosomes. We show that binding to AP-1 or AP-3 depends on the primary sequence of the signal and not its position within the cytoplasmic domain. Mutants that preferentially bound either AP-1 or AP-3 each trafficked toward melanosomes and functionally complemented OCA2 deficiency, but AP-3 binding was necessary for steady-state melanosome localization. Unlike tyrosinase, which also engages AP-3 for optimal melanosomal delivery, both AP-1– and AP-3–favoring OCA2 variants required BLOC-1 for melanosomal transport. These data provide evidence for distinct roles of AP-1 and AP-3 in OCA2 transport to melanosomes and indicate that BLOC-1 can cooperate with either adaptor during cargo sorting to LROs. PMID:22718909

Identification of microbes from the surfaces of food-processing lines based on the flow cytometric evaluation of cellular metabolic activity combined with cell sorting.

PubMed

Juzwa, W; Duber, A; Myszka, K; Białas, W; Czaczyk, K

2016-09-01

In this study the design of a flow cytometry-based procedure to facilitate the detection of adherent bacteria from food-processing surfaces was evaluated. The measurement of the cellular redox potential (CRP) of microbial cells was combined with cell sorting for the identification of microorganisms. The procedure enhanced live/dead cell discrimination owing to the measurement of the cell physiology. The microbial contamination of the surface of a stainless steel conveyor used to process button mushrooms was evaluated in three independent experiments. The flow cytometry procedure provided a step towards monitoring of contamination and enabled the assessment of microbial food safety hazards by the discrimination of active, mid-active and non-active bacterial sub-populations based on determination of their cellular vitality and subsequently single cell sorting to isolate microbial strains from discriminated sub-populations. There was a significant correlation (r = 0.97; p < 0.05) between the bacterial cell count estimated by the pour plate method and flow cytometry, despite there being differences in the absolute number of cells detected. The combined approach of flow cytometric CRP measurement and cell sorting allowed an in situ analysis of microbial cell vitality and the identification of species from defined sub-populations, although the identified microbes were limited to culturable cells.

Categorization and reasoning among tree experts: do all roads lead to Rome?

PubMed

Medin, D L; Lynch, E B; Coley, J D; Atran, S

1997-02-01

To what degree do conceptual systems reflect universal patterns of featural covariation in the world (similarity) or universal organizing principles of mind, and to what degree do they reflect specific goals, theories, and beliefs of the categorizer? This question was addressed in experiments concerned with categorization and reasoning among different types of tree experts (e.g., taxonomists, landscape workers, parks maintenance personnel). The results show an intriguing pattern of similarities and differences. Differences in sorting between taxonomists and maintenance workers reflect differences in weighting of morphological features. Landscape workers, in contrast, sort trees into goal-derived categories based on utilitarian concerns. These sorting patterns carry over into category-based reasoning for the taxonomists and maintenance personnel but not the landscape workers. These generalizations interact with taxonomic rank and suggest that the genus (or folk generic) level is relatively and in some cases absolutely privileged. Implications of these findings for theories of categorization are discussed.

Non-invasive sex assessment in bovine semen by Raman spectroscopy

NASA Astrophysics Data System (ADS)

De Luca, A. C.; Managó, S.; Ferrara, M. A.; Rendina, I.; Sirleto, L.; Puglisi, R.; Balduzzi, D.; Galli, A.; Ferraro, P.; Coppola, G.

2014-05-01

X- and Y-chromosome-bearing sperm cell sorting is of great interest, especially for animal production management systems and genetic improvement programs. Here, we demonstrate an optical method based on Raman spectroscopy to separate X- and Y-chromosome-bearing sperm cells, overcoming many of the limitations associated with current sex-sorting protocols. A priori Raman imaging of bull spermatozoa was utilized to select the sampling points (head-neck region), which were then used to discriminate cells based on a spectral classification model. Main variations of Raman peaks associated with the DNA content were observed together with a variation due to the sex membrane proteins. Next, we used principal component analysis to determine the efficiency of our device as a cell sorting method. The results (>90% accuracy) demonstrated that Raman spectroscopy is a powerful candidate for the development of a highly efficient, non-invasive, and non-destructive tool for sperm sexing.

The role of acoustic emission in the study of rock fracture

USGS Publications Warehouse

Lockner, D.

1993-01-01

The development of faults and shear fracture systems over a broad range of temperature and pressure and for a variety of rock types involves the growth and interaction of microcracks. Acoustic emission (AE), which is produced by rapid microcrack growth, is a ubiquitous phenomenon associated with brittle fracture and has provided a wealth of information regarding the failure process in rock. This paper reviews the successes and limitations of AE studies as applied to the fracture process in rock with emphasis on our ability to predict rock failure. Application of laboratory AE studies to larger scale problems related to the understanding of earthquake processes is also discussed. In this context, laboratory studies can be divided into the following categories. 1) Simple counting of the number of AE events prior to sample failure shows a correlation between AE rate and inelastic strain rate. Additional sorting of events by amplitude has shown that AE events obey the power law frequency-magnitude relation observed for earthquakes. These cumulative event count techniques are being used in conjunction with damage mechanics models to determine how damage accumulates during loading and to predict failure. 2) A second area of research involves the location of hypocenters of AE source events. This technique requires precise arrival time data of AE signals recorded over an array of sensors that are essentially a miniature seismic net. Analysis of the spatial and temporal variation of event hypocenters has improved our understanding of the progression of microcrack growth and clustering leading to rock failure. Recently, fracture nucleation and growth have been studied under conditions of quasi-static fault propagation by controlling stress to maintain constant AE rate. 3) A third area of study involves the analysis of full waveform data as recorded at receiver sites. One aspect of this research has been to determine fault plane solutions of AE source events from first motion data. These studies show that in addition to pure tensile and double couple events, a significant number of more complex event types occur in the period leading to fault nucleation. 4) P and S wave velocities (including spatial variations) and attenuation have been obtained by artificially generating acoustic pulses which are modified during passage through the sample. ?? 1993.

The Research on Tunnel Surrounding Rock Classification Based on Geological Radar and Probability Theory

NASA Astrophysics Data System (ADS)

Xiao Yong, Zhao; Xin, Ji Yong; Shuang Ying, Zuo

2018-03-01

In order to effectively classify the surrounding rock types of tunnels, a multi-factor tunnel surrounding rock classification method based on GPR and probability theory is proposed. Geological radar was used to identify the geology of the surrounding rock in front of the face and to evaluate the quality of the rock face. According to the previous survey data, the rock uniaxial compressive strength, integrity index, fissure and groundwater were selected for classification. The related theories combine them into a multi-factor classification method, and divide the surrounding rocks according to the great probability. Using this method to classify the surrounding rock of the Ma’anshan tunnel, the surrounding rock types obtained are basically the same as those of the actual surrounding rock, which proves that this method is a simple, efficient and practical rock classification method, which can be used for tunnel construction.

Geology of the Shinarump No. 1 uranium mine, Seven Mile Canyon area, Grand County, Utah

USGS Publications Warehouse

Finch, Warren Irvin

1954-01-01

The geology of the Shinarump No. 1 uranium mine, located about 12 miles northwest of Moab, Utah, in the Seven Mile Canyon area, Grand County, Utah, was studied to determine the habits, ore controls, and possible origin of the deposit. Rocks of Permian, Triassic, and Jurassic age crop out in the area mapped, and uranium deposits are found in three zones in the lower 25 feet of the Chinle formation of Late Triassic age. The Shinarump No. 1 mine, which is in the lowermost zone, is located on the west flank of the Moab anticline near the Moab fault. The Shinarump No. 1 uranium deposit consists of discontinuous lenticular layers of mineralized rock, irregular in outline, that, in general, follow the bedding. Ore minerals, mainly uraninite, impregnate the rock. High-grade ore seams of uraninite and chalcocite occur along bedding planes. Uraninite formed later than, or simultaneous with, most sulfides, and the chalcocite may be of two ages, with some being later than uraninite. Uraninite and chalcocite are concentrated in the more poorly sorted parts of siltstones. In the Seven Mile Canyon area guides to ore inferred from the study of the Shinarump No. 1 deposit are the presence of bleached siltstone, carbonaceous matter, and copper sulfides. Results of spectrographic analysis indicate that the mineralizing solutions contained important amounts of barium, vanadium, uranium, and copper, as well as lesser amounts of strontium, chromium, boron, yttrium, lead, and zinc. The origin of the Shinarump No. 1 deposit is thought to be hydrothermal.

Geology of the Shinarump No. 1 uranium mine, Seven Mile Canyon area, Grand County, Utah

USGS Publications Warehouse

Finch, Warren Irvin

1953-01-01

The Shinarump No. 1 uranium mine is located about 12 miles northwest of Moab, Utah, in the Seven Mile Canyon area, Grand County, Utah. A study was made of the geology of the Shinarump No. 1 mine in order to determine the habits, ore controls, and possible origin of the deposit. Rocks of Permain, Triassic, and Jurassic age crop out in the area mapped. Uranium deposits are found in three zones in the lower 25 feet of the Upper Triassic Chinle formation. The Shinarump No. 1 mine, which is in the lowermost zone, is located on the west flank of the Moab anticline near the Moab fault. The Shinarump No. 1 uranium deposit consists of discontinuous lenticular layers of mineralized rock, irregular in outline, that, in general, follow the bedding. Ore minerals, mainly uranite, impregnate the rock. High-grade seams of uranite and chalcocite occur along bedding planes. Formation of unraninite is later than or simultaneous with most sulfides. Chalcocite may be of two ages, with some being later than uraninite. Uraninite and chalcocite are concentrated in the poorer sorted parts of siltstones. Guides to ore in the Seven Mile Canyon area inferred from the study of the Shinarump No. 1 deposit are the presence of bleached siltstone, copper sulfides, and carbonaceous matter. Results of spectrographic analysis indicated that the mineralizing solutions contained important amounts of barium, vanadium, uranium, and copper as well as lesser amounts of strontium, chromium, boron, yttrium, lead, and zinc. The origin of the Shinarump No. 1 deposit is thought to be hydrothermal, dated as later or early.

Quantification of the effects of secondary matrix on the analysis of sandstone composition, and a petrographic-chemical technique for retrieving original framework grain modes of altered sandstones.

PubMed

Cox, R; Lowe, D R

1996-05-01

Most studies of sandstone provenance involve modal analysis of framework grains using techniques that exclude the fine-grained breakdown products of labile mineral grains and rock fragments, usually termed secondary matrix or pseudomatrix. However, the data presented here demonstrate that, when the proportion of pseudomatrix in a sandstone exceeds 10%, standard petrographic analysis can lead to incorrect provenance interpretation. Petrographic schemes for provenance analysis such as QFL and QFR should not therefore be applied to sandstones containing more than 10% secondary matrix. Pseudomatrix is commonly abundant in sandstones, and this is therefore a problem for provenance analysis. The difficulty can be alleviated by the use of whole-rock chemistry in addition to petrographic analysis. Combination of chemical and point-count data permits the construction of normative compositions that approximate original framework grain compositions. Provenance analysis is also complicated in many cases by fundamental compositional alteration during weathering and transport. Many sandstones, particularly shallow marine deposits, have undergone vigorous reworking, which may destroy unstable mineral grains and rock fragments. In such cases it may not be possible to retrieve provenance information by either petrographic or chemical means. Because of this, pseudomatrix-rich sandstones should be routinely included in chemical-petrological provenance analysis. Because of the many factors, both pre- and post-depositional, that operate to increase the compositional maturity of sandstones, petrologic studies must include a complete inventory of matrix proportions, grain size and sorting parameters, and an assessment of depositional setting.

Highstand shelf fans: The role of buoyancy reversal in the deposition of a new type of shelf sand body

USGS Publications Warehouse

Steel, Elisabeth; Simms, Alexander R.; Warrick, Jonathan; Yokoyama, Yusuke

2016-01-01

Although sea-level highstands are typically associated with sediment-starved continental shelves, high sea level does not hinder major river floods. Turbidity currents generated by plunging of sediment-laden rivers at the fluvial-marine interface, known as hyperpycnal flows, allow for cross-shelf transport of suspended sand beyond the coastline. Hyperpycnal flows in southern California have deposited six subaqueous fans on the shelf of the northern Santa Barbara Channel in the Holocene. Using eight cores and nine grab samples, we describe the deposits, age, and stratigraphic architecture of two fans in the Santa Barbara Channel. Fan lobes have up to 3 m of relief and are composed of multiple hyperpycnite beds ∼5 cm to 40 cm thick. Deposit architecture and geometry suggest the hyperpycnal flows became positively buoyant and lifted off the seabed, resulting in well-sorted, structureless, elongate sand lobes. Contrary to conventional sequence stratigraphic models, the presence of these features on the continental shelf suggests that active-margin shelves may locally develop high-quality reservoir sand bodies during sea-level highstands, and that such shelves need not be solely the site of sediment bypass. These deposits may provide a Quaternary analogue to many well-sorted sand bodies in the rock record that are interpreted as turbidites but lack typical Bouma-type features.

The analysis of creep characteristics of the surrounding rock of the carbonaceous rock tunnel based on Singh-Mitchell model

NASA Astrophysics Data System (ADS)

Luo, Junhui; Mi, Decai; Ye, Qiongyao; Deng, Shengqiang; Zeng, Fuquan; Zeng, Yongjun

2018-01-01

Carbonaceous rock has the characteristics of easy disintegration, softening, swelling and environmental sensitivity, which belongs to soft surrounding rock, and the deformation during excavation and long-term stability of the surrounding rock of carbonaceous rock tunnel are common problems in the construction of carbonaceous rock tunnel. According to the above, the Monitor and measure the displacement, temperature and osmotic pressure of the surrounding carbonaceous rock of the tunnel of Guangxi Hebai highway. Then it based on the obtaining data to study the creep mechanism of surrounding rock using Singh-Mitchell model and predict the deformation of surrounding rock before the tunnel is operation. The results show that the Singh-Mitchell creep model can effectively analyse and predict the deformation development law of surrounding rock of tunnel without considering temperature and osmotic pressure, it can provide reference for the construction of carbonaceous rock tunnel and the measures to prevent and reinforce it..

Neural spike sorting using iterative ICA and a deflation-based approach.

PubMed

Tiganj, Z; Mboup, M

2012-12-01

We propose a spike sorting method for multi-channel recordings. When applied in neural recordings, the performance of the independent component analysis (ICA) algorithm is known to be limited, since the number of recording sites is much lower than the number of neurons. The proposed method uses an iterative application of ICA and a deflation technique in two nested loops. In each iteration of the external loop, the spiking activity of one neuron is singled out and then deflated from the recordings. The internal loop implements a sequence of ICA and sorting for removing the noise and all the spikes that are not fired by the targeted neuron. Then a final step is appended to the two nested loops in order to separate simultaneously fired spikes. We solve this problem by taking all possible pairs of the sorted neurons and apply ICA only on the segments of the signal during which at least one of the neurons in a given pair was active. We validate the performance of the proposed method on simulated recordings, but also on a specific type of real recordings: simultaneous extracellular-intracellular. We quantify the sorting results on the extracellular recordings for the spikes that come from the neurons recorded intracellularly. The results suggest that the proposed solution significantly improves the performance of ICA in spike sorting.

A new technology for automatic identification and sorting of plastics for recycling.

PubMed

Ahmad, S R

2004-10-01

A new technology for automatic sorting of plastics, based upon optical identification of fluorescence signatures of dyes, incorporated in such materials in trace concentrations prior to product manufacturing, is described. Three commercial tracers were selected primarily on the basis of their good absorbency in the 310-370 nm spectral band and their identifiable narrow-band fluorescence signatures in the visible band of the spectrum when present in binary combinations. This absorption band was selected because of the availability of strong emission lines in this band from a commercial Hg-arc lamp and high fluorescence quantum yields of the tracers at this excitation wavelength band. The plastics chosen for tracing and identification are HDPE, LDPE, PP, EVA, PVC and PET and the tracers were compatible and chemically non-reactive with the host matrices and did not affect the transparency of the plastics. The design of a monochromatic and collimated excitation source, the sensor system are described and their performances in identifying and sorting plastics doped with tracers at a few parts per million concentration levels are evaluated. In an industrial sorting system, the sensor was able to sort 300 mm long plastic bottles at a conveyor belt speed of 3.5 m.sec(-1) with a sorting purity of -95%. The limitation was imposed due to mechanical singulation irregularities at high speed and the limited processing speed of the computer used.

Pulsed laser activated cell sorter (PLACS) for high-throughput fluorescent mammalian cell sorting

NASA Astrophysics Data System (ADS)

Chen, Yue; Wu, Ting-Hsiang; Chung, Aram; Kung, Yu-Chung; Teitell, Michael A.; Di Carlo, Dino; Chiou, Pei-Yu

2014-09-01

We present a Pulsed Laser Activated Cell Sorter (PLACS) realized by exciting laser induced cavitation bubbles in a PDMS microfluidic channel to create high speed liquid jets to deflect detected fluorescent samples for high speed sorting. Pulse laser triggered cavitation bubbles can expand in few microseconds and provide a pressure higher than tens of MPa for fluid perturbation near the focused spot. This ultrafast switching mechanism has a complete on-off cycle less than 20 μsec. Two approaches have been utilized to achieve 3D sample focusing in PLACS. One is relying on multilayer PDMS channels to provide 3D hydrodynamic sheath flows. It offers accurate timing control of fast (2 m sec-1) passing particles so that synchronization with laser bubble excitation is possible, an critically important factor for high purity and high throughput sorting. PLACS with 3D hydrodynamic focusing is capable of sorting at 11,000 cells/sec with >95% purity, and 45,000 cells/sec with 45% purity using a single channel in a single step. We have also demonstrated 3D focusing using inertial flows in PLACS. This sheathless focusing approach requires 10 times lower initial cell concentration than that in sheath-based focusing and avoids severe sample dilution from high volume sheath flows. Inertia PLACS is capable of sorting at 10,000 particles sec-1 with >90% sort purity.

Coupling Bacterial Activity Measurements with Cell Sorting by Flow Cytometry.

PubMed

Servais; Courties; Lebaron; Troussellier

1999-08-01

> Abstract A new procedure to investigate the relationship between bacterial cell size and activity at the cellular level has been developed; it is based on the coupling of radioactive labeling of bacterial cells and cell sorting by flow cytometry after SYTO 13 staining. Before sorting, bacterial cells were incubated in the presence of tritiated leucine using a procedure similar to that used for measuring bacterial production by leucine incorporation and then stained with SYTO 13. Subpopulations of bacterial cells were sorted according to their average right-angle light scatter (RALS) and fluorescence. Average RALS was shown to be significantly related to the average biovolume. Experiments were performed on samples collected at different times in a Mediterranean seawater mesocosm enriched with nitrogen and phosphorus. At four sampling times, bacteria were sorted in two subpopulations (cells smaller and larger than 0.25 µm(3)). The results indicate that, at each sampling time, the growth rate of larger cells was higher than that of smaller cells. In order to confirm this tendency, cell sorting was performed on six subpopulations differing in average biovolume during the mesocosm follow-up. A clear increase of the bacterial growth rates was observed with increasing cell size for the conditions met in this enriched mesocosm.http://link.springer-ny.com/link/service/journals/00248/bibs/38n2p180.html

Effects of Overstocking at the Feedbunk on the Growth Performance and Sorting Characteristics of a Forage-based Diet Offered for Ad-libitum Intake to Replacement Holstein Dairy Heifers

USDA-ARS?s Scientific Manuscript database

Various forms of overcrowding are common in heifer-rearing operations. Our objectives for this study were to evaluate the effects of overstocking at the feedbunk (100, 133, 160, or 200% of capacity) on the growth performance, feedbunk-sorting behaviors, and hygiene of 128 gravid Holstein heifers (47...

Fluence map optimization (FMO) with dose-volume constraints in IMRT using the geometric distance sorting method.

PubMed

Lan, Yihua; Li, Cunhua; Ren, Haozheng; Zhang, Yong; Min, Zhifang

2012-10-21

A new heuristic algorithm based on the so-called geometric distance sorting technique is proposed for solving the fluence map optimization with dose-volume constraints which is one of the most essential tasks for inverse planning in IMRT. The framework of the proposed method is basically an iterative process which begins with a simple linear constrained quadratic optimization model without considering any dose-volume constraints, and then the dose constraints for the voxels violating the dose-volume constraints are gradually added into the quadratic optimization model step by step until all the dose-volume constraints are satisfied. In each iteration step, an interior point method is adopted to solve each new linear constrained quadratic programming. For choosing the proper candidate voxels for the current dose constraint adding, a so-called geometric distance defined in the transformed standard quadratic form of the fluence map optimization model was used to guide the selection of the voxels. The new geometric distance sorting technique can mostly reduce the unexpected increase of the objective function value caused inevitably by the constraint adding. It can be regarded as an upgrading to the traditional dose sorting technique. The geometry explanation for the proposed method is also given and a proposition is proved to support our heuristic idea. In addition, a smart constraint adding/deleting strategy is designed to ensure a stable iteration convergence. The new algorithm is tested on four cases including head-neck, a prostate, a lung and an oropharyngeal, and compared with the algorithm based on the traditional dose sorting technique. Experimental results showed that the proposed method is more suitable for guiding the selection of new constraints than the traditional dose sorting method, especially for the cases whose target regions are in non-convex shapes. It is a more efficient optimization technique to some extent for choosing constraints than the dose sorting method. By integrating a smart constraint adding/deleting scheme within the iteration framework, the new technique builds up an improved algorithm for solving the fluence map optimization with dose-volume constraints.

Sorting cells by their density

PubMed Central

Norouzi, Nazila; Bhakta, Heran C.

2017-01-01

Sorting cells by their type is an important capability in biological research and medical diagnostics. However, most cell sorting techniques rely on labels or tags, which may have limited availability and specificity. Sorting different cell types by their different physical properties is an attractive alternative to labels because all cells intrinsically have these physical properties. But some physical properties, like cell size, vary significantly from cell to cell within a cell type; this makes it difficult to identify and sort cells based on their sizes alone. In this work we continuously sort different cells types by their density, a physical property with much lower cell-to-cell variation within a cell type (and therefore greater potential to discriminate different cell types) than other physical properties. We accomplish this using a 3D-printed microfluidic chip containing a horizontal flowing micron-scale density gradient. As cells flow through the chip, Earth’s gravity makes each cell move vertically to the point where the cell’s density matches the surrounding fluid’s density. When the horizontal channel then splits, cells with different densities are routed to different outlets. As a proof of concept, we use our density sorter chip to sort polymer microbeads by their material (polyethylene and polystyrene) and blood cells by their type (white blood cells and red blood cells). The chip enriches the fraction of white blood cells in a blood sample from 0.1% (in whole blood) to nearly 98% (in the output of the chip), a 1000x enrichment. Any researcher with access to a 3D printer can easily replicate our density sorter chip and use it in their own research using the design files provided as online Supporting Information. Additionally, researchers can simulate the performance of a density sorter chip in their own applications using the Python-based simulation software that accompanies this work. The simplicity, resolution, and throughput of this technique make it suitable for isolating even rare cell types in complex biological samples, in a wide variety of different research and clinical applications. PMID:28723908

Short communication: Feed sorting of dairy heifers is influenced by method of dietary transition.

PubMed

Miller-Cushon, E K; Vogel, J P; DeVries, T J

2015-04-01

This study investigated the effect of exposing heifers to individual feed components on the extent and pattern of feed sorting upon transition to a novel ration. Holstein heifers (394 ± 62 d old, weighing 409.8 ± 37.3 kg; mean ± SD), consuming a familiar mixed silage-based ration [55% corn silage and 45% haylage, dry matter (DM) basis], were transitioned to a novel total mixed ration [TMR; 41.6% haylage, 36.5% corn silage, 14.6% high-moisture corn, and 7.3% protein supplement, DM basis] by 1 of 2 treatments: direct transition to novel TMR (DIR; n = 5) or exposure to novel TMR components individually before receiving novel TMR (COM; n = 6). During the baseline period (d 1 to 4), all heifers were offered the familiar silage-based ration. During transition (d 5 to 12), DIR heifers received the novel TMR, whereas COM heifers received the novel TMR components offered separately, in amounts according to TMR composition (target 15% orts). After transition (d 13 to 20), all heifers received the novel TMR. Feed intake and feeding time were determined daily and fresh feed and individual orts were sampled every 2d for particle size analysis and neutral detergent fiber content. The particle size separator consisted of 3 screens (18, 9, and 1.18 mm) and a bottom pan, resulting in 4 fractions (long, medium, short, and fine). Sorting activity for each fraction was calculated as actual intake expressed as a percentage of predicted intake. We detected no effect of treatment on dry matter intake or feeding time. After transition to the novel TMR, COM heifers sorted to a greater extent than did DIR heifers, sorting against long particles (95.4 vs. 98.9%) and for short particles (101.7 vs. 100.6%). Differences in sorting patterns resulted in COM heifers tending to have lower neutral detergent fiber intake as a percentage of predicted intake (98.9 vs. 100.5%). The results of this study suggest that the degree of feed sorting may be influenced by method of transition to a novel ration. Copyright © 2015 American Dairy Science Association. Published by Elsevier Inc. All rights reserved.

A task analysis of the shift from teacher instructions to self-instructions in performing an in-common task.

PubMed

Grote, I; Rosales, J; Baer, D M

1996-11-01

Three preschool children repeatedly did four kinds of sorts with a deck of stimulus cards: a difficult, untaught target sort and three other sorts considered analytic of self-instructing the target performance. The untaught target sort was to find in a deck of cards those matching what two sample cards had in common. Most preschool children must be taught to mediate this problem. The three other kinds of sorts taught skills involved in the target performance or its mediation. As correct self-instructive talk emerged in the target sorts, it was confirmed. The untaught target sorts were interspersed infrequently among the three alternating directly taught skill sorts, to see if accurate target sorts, and accurate self-instructive talk about the target sorts, would emerge as the three skill sorts were mastered. As all the sorts progressed, increasing accuracy was seen first in the skill sorts and then in the untaught target sorts. All three subjects showed subsequent generalization to new target sorts involving other stimulus sets. Correct spontaneous self-instructions about the target sorts increased from near zero at the beginning of the experiment to consistency at its end. Thus the three skill sorts appeared sufficient for the emergence of a self-instructed solution to the previously insoluble target performance.

Web page sorting algorithm based on query keyword distance relation

NASA Astrophysics Data System (ADS)

Yang, Han; Cui, Hong Gang; Tang, Hao

2017-08-01

In order to optimize the problem of page sorting, according to the search keywords in the web page in the relationship between the characteristics of the proposed query keywords clustering ideas. And it is converted into the degree of aggregation of the search keywords in the web page. Based on the PageRank algorithm, the clustering degree factor of the query keyword is added to make it possible to participate in the quantitative calculation. This paper proposes an improved algorithm for PageRank based on the distance relation between search keywords. The experimental results show the feasibility and effectiveness of the method.

Sorting variables for each case: a new algorithm to calculate injury severity score (ISS) using SPSS-PC.

PubMed

Linn, S

One of the more often used measures of multiple injuries is the injury severity score (ISS). Determination of the ISS is based on the abbreviated injury scale (AIS). This paper suggests a new algorithm to sort the AISs for each case and calculate ISS. The program uses unsorted abbreviated injury scale (AIS) levels for each case and rearranges them in descending order. The first three sorted AISs representing the three most severe injuries of a person are then used to calculate injury severity score (ISS). This algorithm should be useful for analyses of clusters of injuries especially when more patients have multiple injuries.

Visualization of Stereoselective Supramolecular Polymers by Chirality-Controlled Energy Transfer.

PubMed

Sarkar, Aritra; Dhiman, Shikha; Chalishazar, Aditya; George, Subi J

2017-10-23

Chirality-driven self-sorting is envisaged to efficiently control functional properties in supramolecular materials. However, the challenge arises because of a lack of analytical methods to directly monitor the enantioselectivity of the resulting supramolecular assemblies. Presented herein are two fluorescent core-substituted naphthalene-diimide-based donor and acceptor molecules with minimal structural mismatch and they comprise strong self-recognizing chiral motifs to determine the self-sorting process. As a consequence, stereoselective supramolecular polymerization with an unprecedented chirality control over energy transfer has been achieved. This chirality-controlled energy transfer has been further exploited as an efficient probe to visualize microscopically the chirality driven self-sorting. © 2017 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

Dielectrophoretic focusing integrated pulsed laser activated cell sorting

NASA Astrophysics Data System (ADS)

Zhu, Xiongfeng; Kung, Yu-Chun; Wu, Ting-Hsiang; Teitell, Michael A.; Chiou, Pei-Yu

2017-08-01

We present a pulsed laser activated cell sorter (PLACS) integrated with novel sheathless size-independent dielectrophoretic (DEP) focusing. Microfluidic fluorescence activated cell sorting (μFACS) systems aim to provide a fully enclosed environment for sterile cell sorting and integration with upstream and downstream microfluidic modules. Among them, PLACS has shown a great potential in achieving comparable performance to commercial aerosol-based FACS (>90% purity at 25,000 cells sec-1). However conventional sheath flow focusing method suffers a severe sample dilution issue. Here we demonstrate a novel dielectrophoresis-integrated pulsed laser activated cell sorter (DEP-PLACS). It consists of a microfluidic channel with 3D electrodes laid out to provide a tunnel-shaped electric field profile along a 4cmlong channel for sheathlessly focusing microparticles/cells into a single stream in high-speed microfluidic flows. All focused particles pass through the fluorescence detection zone along the same streamline regardless of their sizes and types. Upon detection of target fluorescent particles, a nanosecond laser pulse is triggered and focused in a neighboring channel to generate a rapidly expanding cavitation bubble for precise sorting. DEP-PLACS has achieved a sorting purity of 91% for polystyrene beads at a throughput of 1,500 particle/sec.

Developing educational competencies for dissemination and implementation research training programs: an exploratory analysis using card sorts.

PubMed

Padek, Margaret; Colditz, Graham; Dobbins, Maureen; Koscielniak, Nikolas; Proctor, Enola K; Sales, Anne E; Brownson, Ross C

2015-08-12

With demand increasing for dissemination and implementation (D&I) training programs in the USA and other countries, more structured, competency-based, and tested curricula are needed to guide training programs. There are many benefits to the use of competencies in practice-based education such as the establishment of rigorous standards as well as providing an additional metrics for development and growth. As the first aim of a D&I training grant, an exploratory study was conducted to establish a new set of D&I competencies to guide training in D&I research. Based upon existing D&I training literature, the leadership team compiled an initial list of competencies. The research team then engaged 16 additional colleagues in the area of D&I science to provide suggestions to the initial list. The competency list was then additionally narrowed to 43 unique competencies following feedback elicited from these D&I researchers. Three hundred additional D&I researchers were then invited via email to complete a card sort in which the list of competencies were sorted into three categories of experience levels. Participants had previous first-hand experience with D&I or knowledge translation training programs in the past. Participants reported their self-identified D&I expertise level as well as the country in which their home institution is located. A mean score was calculated for each competency based on their experience level categorization. From these mean scores, beginner-, intermediate-, and advanced-level tertiles were created for the competencies. The card sort request achieved a 41 % response rate (n = 124). The list of 43 competencies was organized into four broad domains and sorted based on their experience level score. Eleven competencies were classified into the "Beginner" category, 27 into "Intermediate," and 5 into "Advanced." Education and training developers can use this competency list to formalize future trainings in D&I research, create more evidence-informed curricula, and enable overall capacity building and accompanying metrics in the field of D&I training and research.

Critical Role of the Sorting Polymer in Carbon Nanotube-Based Minority Carrier Devices.

PubMed

Mallajosyula, Arun T; Nie, Wanyi; Gupta, Gautam; Blackburn, Jeffrey L; Doorn, Stephen K; Mohite, Aditya D

2016-12-27

A prerequisite for carbon nanotube-based optoelectronic devices is the ability to sort them into a pure semiconductor phase. One of the most common sorting routes is enabled through using specific wrapping polymers. Here we show that subtle changes in the polymer structure can have a dramatic influence on the figures of merit of a carbon nanotube-based photovoltaic device. By comparing two commonly used polyfluorenes (PFO and PFO-BPy) for wrapping (7,5) and (6,5) chirality SWCNTs, we demonstrate that they have contrasting effects on the device efficiency. We attribute this to the differences in their ability to efficiently transfer charge. Although PFO may act as an efficient interfacial layer at the anode, PFO-BPy, having the additional pyridine side groups, forms a high resistance layer degrading the device efficiency. By comparing PFO|C 60 and C 60 -only devices, we found that presence of a PFO layer at low optical densities resulted in the increase of all three solar cell parameters, giving nearly an order of magnitude higher efficiency over that of C 60 -only devices. In addition, with a relatively higher contribution to photocurrent from the PFO-C 60 interface, an open circuit voltage of 0.55 V was obtained for PFO-(7,5)-C 60 devices. On the other hand, PFO-BPy does not affect the open circuit voltage but drastically reduces the short circuit current density. These results indicate that the charge transport properties and energy levels of the sorting polymers have to be taken into account to fully understand their effect on carbon nanotube-based solar cells.

Design and simulation of programmable relational optoelectronic time-pulse coded processors as base elements for sorting neural networks

NASA Astrophysics Data System (ADS)

Krasilenko, Vladimir G.; Nikolsky, Alexander I.; Lazarev, Alexander A.; Lazareva, Maria V.

2010-05-01

In the paper we show that the biologically motivated conception of time-pulse encoding usage gives a set of advantages (single methodological basis, universality, tuning simplicity, learning and programming et al) at creation and design of sensor systems with parallel input-output and processing for 2D structures hybrid and next generations neuro-fuzzy neurocomputers. We show design principles of programmable relational optoelectronic time-pulse encoded processors on the base of continuous logic, order logic and temporal waves processes. We consider a structure that execute analog signal extraction, analog and time-pulse coded variables sorting. We offer optoelectronic realization of such base relational order logic element, that consists of time-pulse coded photoconverters (pulse-width and pulse-phase modulators) with direct and complementary outputs, sorting network on logical elements and programmable commutation blocks. We make technical parameters estimations of devices and processors on such base elements by simulation and experimental research: optical input signals power 0.2 - 20 uW, processing time 1 - 10 us, supply voltage 1 - 3 V, consumption power 10 - 100 uW, extended functional possibilities, learning possibilities. We discuss some aspects of possible rules and principles of learning and programmable tuning on required function, relational operation and realization of hardware blocks for modifications of such processors. We show that it is possible to create sorting machines, neural networks and hybrid data-processing systems with untraditional numerical systems and pictures operands on the basis of such quasiuniversal hardware simple blocks with flexible programmable tuning.

Evolution of geothermal fluids deduced from chemistry plots: Yellowstone National Park (U.S.A.)

USGS Publications Warehouse

Mazor, E.; Thompson, J.M.

1982-01-01

Large amounts of chemical data, obtained in geothermal fields, may readily be sorted-out by the aid of a simple set of graphs that provide a clear over-all picture and facilitate the understanding of geochemical processes taking place. As a case study, data from several hundred samples of the thermal springs at the well-known Yellowstone National Park are discussed. The pattern obtained seems to indicate: (1) geochemical similarity between the spring groups of Heart Lake, Shoshone, Upper, Midway, Lower and Norris Geyser Basins, i.e., a geochemical uniformity of major spring groups located over 40 km apart; (2) these groups may be described as originating from a common fluid, most resembling the composition of Norris waters, accompanied by CO2, and other volatiles, that react with igneous rocks, forming local variations; (3) the secondary reactions occur at (medium) depth, before the ascent to the surface; (4) extensive concentration-dilution processes occur during the ascent to the surface. The water of the Mammoth group may be described as originating from the same Norris-like fluid that has been diluted (low Na and Cl contents) and intensively reacted with carbonaceous rocks, thus gaining in Ca, Mg, SO4, and HCO3. ?? 1982.

The Mars Science Laboratory (MSL) Bagnold Dunes Campaign, Phase I: Overview and introduction to the special issue

NASA Astrophysics Data System (ADS)

Bridges, Nathan T.; Ehlmann, Bethany L.

2018-01-01

The Bagnold dunes in Gale Crater, Mars, are the first active aeolian dune field explored in situ on another planet. The Curiosity rover visited the Bagnold dune field to understand modern winds, aeolian processes, rates, and structures; to determine dune material composition, provenance, and the extent and type of compositional sorting; and to collect knowledge that informs the interpretation of past aeolian processes that are preserved in the Martian sedimentary rock record. The Curiosity rover conducted a coordinated campaign of activities lasting 4 months, interspersed with other rover activities, and employing all of the rover's science instruments and several engineering capabilities. Described in 13 manuscripts and summarized here, the major findings of the Bagnold Dunes Campaign, Phase I, include the following: the characterization of and explanation for a distinctive, meter-scale size of sinuous aeolian bedform formed in the high kinetic viscosity regime of Mars' thin atmosphere; articulation and evaluation of a grain splash model that successfully explains the occurrence of saltation even at wind speeds below the fluid threshold; determination of the dune sands' basaltic mineralogy and crystal chemistry in comparison with other soils and sedimentary rocks; and characterization of chemically distinctive volatile reservoirs in sand-sized versus dust-sized fractions of Mars soil, including two volatile-bearing types of amorphous phases.

Strategy for selecting Mars Pathfinder landing sites

NASA Technical Reports Server (NTRS)

Greeley, Ronald; Kuzmin, Ruslin O.

1994-01-01

A strategy for Pathfinder site selection must be developed that is fundamentally different from most previous considerations. At least two approaches can be identified. In one approach, the objective is to select a site representing a key geologic unit on Mars, i.e., a unit that is widespread, easily recognized, and used frequently as a datum in various investigations. The second approach is to select a site that potentially affords access to a wide variety of rock types. Because rover range is limited, rocks from a variety of sources must be assembled in a small area for sampling. Regardless of the approach taken in site selection, the Pathfinder site should include eolian deposits and provisions should be made to obtain measurements on soils. A recommended approach for selecting the Mars Pathfinder landing site is to identify a deltaic deposit, composed of sediments derived from sources of various ages and geologic units that shows evidence of eolian activity. The site should be located as close as possible to the part of the outwash where rapid deposition occurred because the likelihood of 'sorting' by size and composition increases with distance, decreasing the probability of heterogeneity. In addition, it is recommended that field operation tests be conducted to gain experience and insight into conducting science with Pathfinder.

Laboratory testing on infiltration in single synthetic fractures

NASA Astrophysics Data System (ADS)

Cherubini, Claudia; Pastore, Nicola; Li, Jiawei; Giasi, Concetta I.; Li, Ling

2017-04-01

An understanding of infiltration phenomena in unsaturated rock fractures is extremely important in many branches of engineering for numerous reasons. Sectors such as the oil, gas and water industries are regularly interacting with water seepage through rock fractures, yet the understanding of the mechanics and behaviour associated with this sort of flow is still incomplete. An apparatus has been set up to test infiltration in single synthetic fractures in both dry and wet conditions. To simulate the two fracture planes, concrete fractures have been moulded from 3D printed fractures with varying geometrical configurations, in order to analyse the influence of aperture and roughness on infiltration. Water flows through the single fractures by means of a hydraulic system composed by an upstream and a downstream reservoir, the latter being subdivided into five equal sections in order to measure the flow rate in each part to detect zones of preferential flow. The fractures have been set at various angles of inclination to investigate the effect of this parameter on infiltration dynamics. The results obtained identified that altering certain fracture parameters and conditions produces relevant effects on the infiltration process through the fractures. The main variables influencing the formation of preferential flow are: the inclination angle of the fracture, the saturation level of the fracture and the mismatch wavelength of the fracture.

A novel automated spike sorting algorithm with adaptable feature extraction.

PubMed

Bestel, Robert; Daus, Andreas W; Thielemann, Christiane

2012-10-15

To study the electrophysiological properties of neuronal networks, in vitro studies based on microelectrode arrays have become a viable tool for analysis. Although in constant progress, a challenging task still remains in this area: the development of an efficient spike sorting algorithm that allows an accurate signal analysis at the single-cell level. Most sorting algorithms currently available only extract a specific feature type, such as the principal components or Wavelet coefficients of the measured spike signals in order to separate different spike shapes generated by different neurons. However, due to the great variety in the obtained spike shapes, the derivation of an optimal feature set is still a very complex issue that current algorithms struggle with. To address this problem, we propose a novel algorithm that (i) extracts a variety of geometric, Wavelet and principal component-based features and (ii) automatically derives a feature subset, most suitable for sorting an individual set of spike signals. Thus, there is a new approach that evaluates the probability distribution of the obtained spike features and consequently determines the candidates most suitable for the actual spike sorting. These candidates can be formed into an individually adjusted set of spike features, allowing a separation of the various shapes present in the obtained neuronal signal by a subsequent expectation maximisation clustering algorithm. Test results with simulated data files and data obtained from chick embryonic neurons cultured on microelectrode arrays showed an excellent classification result, indicating the superior performance of the described algorithm approach. Copyright © 2012 Elsevier B.V. All rights reserved.

Automated characterization and assembly of individual nanowires for device fabrication.

PubMed

Yu, Kaiyan; Yi, Jingang; Shan, Jerry W

2018-05-15

The automated sorting and positioning of nanowires and nanotubes is essential to enabling the scalable manufacturing of nanodevices for a variety of applications. However, two fundamental challenges still remain: (i) automated placement of individual nanostructures in precise locations, and (ii) the characterization and sorting of highly variable nanomaterials to construct well-controlled nanodevices. Here, we propose and demonstrate an integrated, electric-field based method for the simultaneous automated characterization, manipulation, and assembly of nanowires (ACMAN) with selectable electrical conductivities into nanodevices. We combine contactless and solution-based electro-orientation spectroscopy and electrophoresis-based motion-control, planning and manipulation strategies to simultaneously characterize and manipulate multiple individual nanowires. These nanowires can be selected according to their electrical characteristics and precisely positioned at different locations in a low-conductivity liquid to form functional nanodevices with desired electrical properties. We validate the ACMAN design by assembling field-effect transistors (FETs) with silicon nanowires of selected electrical conductivities. The design scheme provides a key enabling technology for the scalable, automated sorting and assembly of nanowires and nanotubes to build functional nanodevices.

Mesenchymal Stem Cells for Vascular Target Discovery in Breast Cancer-Associated Angiogenesis

DTIC Science & Technology

2004-09-01

Matrigel plug and sorted by flow cytometry . Sorting of these retrieved cells based on co-expression of the GFP marker and cell- surface endothelial...express the green fluorescent protein (GFP) and clonal MSC populations can be isolated and phenotypically and genotypically analyzed by flow cytometry ...monoclonal populations of these GFP+ murine MSCs and conducted flow cytometry analysis to determine their phenotype. Specifically, we determined if

The Principle of the Micro-Electronic Neural Bridge and a Prototype System Design.

PubMed

Huang, Zong-Hao; Wang, Zhi-Gong; Lu, Xiao-Ying; Li, Wen-Yuan; Zhou, Yu-Xuan; Shen, Xiao-Yan; Zhao, Xin-Tai

2016-01-01

The micro-electronic neural bridge (MENB) aims to rebuild lost motor function of paralyzed humans by routing movement-related signals from the brain, around the damage part in the spinal cord, to the external effectors. This study focused on the prototype system design of the MENB, including the principle of the MENB, the neural signal detecting circuit and the functional electrical stimulation (FES) circuit design, and the spike detecting and sorting algorithm. In this study, we developed a novel improved amplitude threshold spike detecting method based on variable forward difference threshold for both training and bridging phase. The discrete wavelet transform (DWT), a new level feature coefficient selection method based on Lilliefors test, and the k-means clustering method based on Mahalanobis distance were used for spike sorting. A real-time online spike detecting and sorting algorithm based on DWT and Euclidean distance was also implemented for the bridging phase. Tested by the data sets available at Caltech, in the training phase, the average sensitivity, specificity, and clustering accuracies are 99.43%, 97.83%, and 95.45%, respectively. Validated by the three-fold cross-validation method, the average sensitivity, specificity, and classification accuracy are 99.43%, 97.70%, and 96.46%, respectively.

Crystal structure of the Streptomyces coelicolor sortase E1 transpeptidase provides insight into the binding mode of the novel class E sorting signal

DOE PAGES

Kattke, Michele D.; Chan, Albert H.; Duong, Andrew; ...

2016-12-09

Here, many species of Gram-positive bacteria use sortase transpeptidases to covalently affix proteins to their cell wall or to assemble pili. Sortase-displayed proteins perform critical and diverse functions for cell survival, including cell adhesion, nutrient acquisition, and morphological development, among others. Based on their amino acid sequences, there are at least six types of sortases (class A to F enzymes); however, class E enzymes have not been extensively studied. Class E sortases are used by soil and freshwater-dwelling Actinobacteria to display proteins that contain a non-canonical LAXTG sorting signal, which differs from 90% of known sorting signals by substitution ofmore » alanine for proline. Here we report the first crystal structure of a class E sortase, the 1.93 Å resolution structure of the SrtE1 enzyme from Streptomyces coelicolor. The active site is bound to a tripeptide, providing insight into the mechanism of substrate binding. SrtE1 possesses β3/β4 and β6/β7 active site loops that contact the LAXTG substrate and are structurally distinct from other classes. We propose that SrtE1 and other class E sortases employ a conserved tyrosine residue within their β3/β4 loop to recognize the amide nitrogen of alanine at position P3 of the sorting signal through a hydrogen bond, as seen here. Incapability of hydrogen-bonding with canonical proline-containing sorting signals likely contributes to class E substrate specificity. Furthermore, we demonstrate that surface anchoring of proteins involved in aerial hyphae formation requires an N-terminal segment in SrtE1 that is presumably positioned within the cytoplasm. Combined, our results reveal unique features within class E enzymes that enable them to recognize distinct sorting signals, and could facilitate the development of substrate-based inhibitors of this important enzyme family.« less

Does the Introduction of the Ranking Task in Valuation Studies Improve Data Quality and Reduce Inconsistencies? The Case of the EQ-5D-5L.

PubMed

Ramos-Goñi, Juan M; Rand-Hendriksen, Kim; Pinto-Prades, Jose Luis

2016-06-01

Time trade-off (TTO)-based valuation studies for the three-level version of the EuroQol five-dimensional questionnaire (EQ-5D) typically started off with a ranking task (ordering the health states by preference). This was not included in the protocol for the five-level EQ-5D (EQ-5D-5L) valuation study. To test whether reintroducing a ranking task before the composite TTO (C-TTO) could help to reduce inconsistencies in C-TTO responses and improve the data quality. Respondents were randomly assigned to three study arms. The control arm was the present EQ-5D-5L study protocol, without ranking. The second arm (ranking without sorting) preceded the present protocol by asking respondents to rank the target health states using physical cards. The states were then valued in random order using C-TTO. In the third arm (ranking and sorting), the ranked states remained visible through the C-TTO tasks and the order of valuation was determined by the ranking. The study used only 10 EQ-5D-5L health states. We compared the C-TTO-based inconsistent pairs of health states and ties. The final sample size was 196 in the control arm, 205 in the ranking without sorting arm, and 199 in the ranking and sorting arm. The percentages of ties by respondents were 15.1%, 12.5%, and 12.6% for the control arm, the ranking without sorting arm, and the ranking and sorting arm, respectively. The extra cost for adding the ranking task was about 15%. The benefit does not justify the effort involved in the ranking task. For this reason, the addition of the ranking task to the present EQ-5D-5L valuation protocol is not an attractive option. Copyright © 2016 International Society for Pharmacoeconomics and Outcomes Research (ISPOR). Published by Elsevier Inc. All rights reserved.

ALGORITHM FOR SORTING GROUPED DATA

NASA Technical Reports Server (NTRS)

Evans, J. D.

1994-01-01

It is often desirable to sort data sets in ascending or descending order. This becomes more difficult for grouped data, i.e., multiple sets of data, where each set of data involves several measurements or related elements. The sort becomes increasingly cumbersome when more than a few elements exist for each data set. In order to achieve an efficient sorting process, an algorithm has been devised in which the maximum most significant element is found, and then compared to each element in succession. The program was written to handle the daily temperature readings of the Voyager spacecraft, particularly those related to the special tracking requirements of Voyager 2. By reducing each data set to a single representative number, the sorting process becomes very easy. The first step in the process is to reduce the data set of width 'n' to a data set of width '1'. This is done by representing each data set by a polynomial of length 'n' based on the differences of the maximum and minimum elements. These single numbers are then sorted and converted back to obtain the original data sets. Required input data are the name of the data file to read and sort, and the starting and ending record numbers. The package includes a sample data file, containing 500 sets of data with 5 elements in each set. This program will perform a sort of the 500 data sets in 3 - 5 seconds on an IBM PC-AT with a hard disk; on a similarly equipped IBM PC-XT the time is under 10 seconds. This program is written in BASIC (specifically the Microsoft QuickBasic compiler) for interactive execution and has been implemented on the IBM PC computer series operating under PC-DOS with a central memory requirement of approximately 40K of 8 bit bytes. A hard disk is desirable for speed considerations, but is not required. This program was developed in 1986.

Field fertility of liquid stored and cryopreserved flow cytometrically sex-sorted stallion sperm.

PubMed

Gibb, Z; Grupen, C G; Maxwell, W M C; Morris, L H A

2017-03-01

The fertility of sex-sorted, cryopreserved stallion sperm must be improved for the sex-sorting technology to be applied commercially. To optimise the conditions used to liquid store stallion sperm prior to sex-sorting and assess the fertility of sperm following sex-sorting and cryopreservation. Both in vitro experiment and randomised controlled trial in healthy, client-owned mares. Stallion ejaculates (n = 9) were diluted in either a skimmed milk (KMT) or BSA (I-BSA) based media to 25 × 10 6 sperm/ml directly (+SP25) or washed to remove seminal plasma and diluted to 25 or 111 × 10 6 sperm/ml (-SP25 and -SP111). Sperm were stored for 18 h at 10 to 15°C and -SP25 and +SP25 treatments were centrifuged and resuspended to 111 × 10 6 sperm/ml. Sperm were incubated under H33342 staining conditions and motility, viability and acrosome integrity assessed. Semen was collected from stallions (n = 4), liquid stored at 10-15°C for up to 5 h and sperm either cryopreserved directly, sex-sorted and cryopreserved, or sex-sorted and returned to liquid storage until insemination. Low-dose hysteroscopic insemination was performed in 23 mares randomly allocated to the semen preparation group and pregnancy determined following embryo flushing on Day 9 after ovulation, or via transrectal ultrasonography on Day 14 after ovulation. Skimmed milk was superior to I-BSA in maintaining motility, viability and acrosome integrity. Seminal plasma removal did not affect the parameters measured at the concentrations examined. Conception rates did not differ significantly between the groups, although a high incidence of pregnancy loss was observed in both the cryopreserved groups. While the conception rates achieved are among the highest yet reported for sex-sorted, cryopreserved stallion sperm, the high incidence of pregnancy loss suggests that the development of the resulting embryos was significantly impaired by the sperm processing treatments. © 2016 EVJ Ltd.

A real time sorting algorithm to time sort any deterministic time disordered data stream

NASA Astrophysics Data System (ADS)

Saini, J.; Mandal, S.; Chakrabarti, A.; Chattopadhyay, S.

2017-12-01

In new generation high intensity high energy physics experiments, millions of free streaming high rate data sources are to be readout. Free streaming data with associated time-stamp can only be controlled by thresholds as there is no trigger information available for the readout. Therefore, these readouts are prone to collect large amount of noise and unwanted data. For this reason, these experiments can have output data rate of several orders of magnitude higher than the useful signal data rate. It is therefore necessary to perform online processing of the data to extract useful information from the full data set. Without trigger information, pre-processing on the free streaming data can only be done with time based correlation among the data set. Multiple data sources have different path delays and bandwidth utilizations and therefore the unsorted merged data requires significant computational efforts for real time manifestation of sorting before analysis. Present work reports a new high speed scalable data stream sorting algorithm with its architectural design, verified through Field programmable Gate Array (FPGA) based hardware simulation. Realistic time based simulated data likely to be collected in an high energy physics experiment have been used to study the performance of the algorithm. The proposed algorithm uses parallel read-write blocks with added memory management and zero suppression features to make it efficient for high rate data-streams. This algorithm is best suited for online data streams with deterministic time disorder/unsorting on FPGA like hardware.

Sort-Mid tasks scheduling algorithm in grid computing.

PubMed

Reda, Naglaa M; Tawfik, A; Marzok, Mohamed A; Khamis, Soheir M

2015-11-01

Scheduling tasks on heterogeneous resources distributed over a grid computing system is an NP-complete problem. The main aim for several researchers is to develop variant scheduling algorithms for achieving optimality, and they have shown a good performance for tasks scheduling regarding resources selection. However, using of the full power of resources is still a challenge. In this paper, a new heuristic algorithm called Sort-Mid is proposed. It aims to maximizing the utilization and minimizing the makespan. The new strategy of Sort-Mid algorithm is to find appropriate resources. The base step is to get the average value via sorting list of completion time of each task. Then, the maximum average is obtained. Finally, the task has the maximum average is allocated to the machine that has the minimum completion time. The allocated task is deleted and then, these steps are repeated until all tasks are allocated. Experimental tests show that the proposed algorithm outperforms almost other algorithms in terms of resources utilization and makespan.

Urban adolescent high-risk sexual behavior: corroboration of focus group discussions through pile-sorting. The AIDS Youth Research Team.

PubMed

Stanton, B F; Aronson, R; Borgatti, S; Galbraith, J; Feigelman, S

1993-01-01

Risk activities for acquisition of the human immunodeficiency virus (HIV) remain prevalent among urban adolescents. While interdisciplinary approaches to examine the variables contributing to risk/protective behaviors have been promoted, strategies for such explorations require further formulation. Recently we employed focus group discussions to explore factors placing urban adolescents at risk for engaging in HIV risk behaviors. The focus group format enables substantial interaction on a topic in a limited time period, but does not always provide expression of the full range of behavioral options. In this study we investigated the use of pile-sorts for confirmation of impressions from focus group discussions among 57 urban youths aged 10-14. The pile-sorts revealed some support for most of the views expressed in the group discussions. However, the sorts revealed more variability in views than was expressed in the group discussions. Substantial gender and age-based differences in perceptions were revealed with potentially important intervention implications.

A discrimination model in waste plastics sorting using NIR hyperspectral imaging system.

PubMed

Zheng, Yan; Bai, Jiarui; Xu, Jingna; Li, Xiayang; Zhang, Yimin

2018-02-01

Classification of plastics is important in the recycling industry. A plastic identification model in the near infrared spectroscopy wavelength range 1000-2500 nm is proposed for the characterization and sorting of waste plastics using acrylonitrile butadiene styrene (ABS), polystyrene (PS), polypropylene (PP), polyethylene (PE), polyethylene terephthalate (PET), and polyvinyl chloride (PVC). The model is built by the feature wavelengths of standard samples applying the principle component analysis (PCA), and the accuracy, property and cross-validation of the model were analyzed. The model just contains a simple equation, center of mass coordinates, and radial distance, with which it is easy to develop classification and sorting software. A hyperspectral imaging system (HIS) with the identification model verified its practical application by using the unknown plastics. Results showed that the identification accuracy of unknown samples is 100%. All results suggested that the discrimination model was potential to an on-line characterization and sorting platform of waste plastics based on HIS. Copyright © 2017 Elsevier Ltd. All rights reserved.

Functions of Adaptor Protein (AP)-3 and AP-1 in Tyrosinase Sorting from Endosomes to MelanosomesD⃞

PubMed Central

Theos, Alexander C.; Tenza, Danièle; Martina, José A.; Hurbain, Ilse; Peden, Andrew A.; Sviderskaya, Elena V.; Stewart, Abigail; Robinson, Margaret S.; Bennett, Dorothy C.; Cutler, Daniel F.; Bonifacino, Juan S.; Marks, Michael S.; Raposo, Graça

2005-01-01

Specialized cells exploit adaptor protein complexes for unique post-Golgi sorting events, providing a unique model system to specify adaptor function. Here, we show that AP-3 and AP-1 function independently in sorting of the melanocyte-specific protein tyrosinase from endosomes to the melanosome, a specialized lysosome-related organelle distinguishable from lysosomes. AP-3 and AP-1 localize in melanocytes primarily to clathrin-coated buds on tubular early endosomes near melanosomes. Both adaptors recognize the tyrosinase dileucine-based melanosome sorting signal, and tyrosinase largely colocalizes with each adaptor on endosomes. In AP-3-deficient melanocytes, tyrosinase accumulates inappropriately in vacuolar and multivesicular endosomes. Nevertheless, a substantial fraction still accumulates on melanosomes, concomitant with increased association with endosomal AP-1. Our data indicate that AP-3 and AP-1 function in partially redundant pathways to transfer tyrosinase from distinct endosomal subdomains to melanosomes and that the AP-3 pathway ensures that tyrosinase averts entrapment on internal membranes of forming multivesicular bodies. PMID:16162817

Sort-Mid tasks scheduling algorithm in grid computing

PubMed Central

Reda, Naglaa M.; Tawfik, A.; Marzok, Mohamed A.; Khamis, Soheir M.

2014-01-01

Scheduling tasks on heterogeneous resources distributed over a grid computing system is an NP-complete problem. The main aim for several researchers is to develop variant scheduling algorithms for achieving optimality, and they have shown a good performance for tasks scheduling regarding resources selection. However, using of the full power of resources is still a challenge. In this paper, a new heuristic algorithm called Sort-Mid is proposed. It aims to maximizing the utilization and minimizing the makespan. The new strategy of Sort-Mid algorithm is to find appropriate resources. The base step is to get the average value via sorting list of completion time of each task. Then, the maximum average is obtained. Finally, the task has the maximum average is allocated to the machine that has the minimum completion time. The allocated task is deleted and then, these steps are repeated until all tasks are allocated. Experimental tests show that the proposed algorithm outperforms almost other algorithms in terms of resources utilization and makespan. PMID:26644937

Interpreting Abstract Interpretations in Membership Equational Logic

NASA Technical Reports Server (NTRS)

Fischer, Bernd; Rosu, Grigore

2001-01-01

We present a logical framework in which abstract interpretations can be naturally specified and then verified. Our approach is based on membership equational logic which extends equational logics by membership axioms, asserting that a term has a certain sort. We represent an abstract interpretation as a membership equational logic specification, usually as an overloaded order-sorted signature with membership axioms. It turns out that, for any term, its least sort over this specification corresponds to its most concrete abstract value. Maude implements membership equational logic and provides mechanisms to calculate the least sort of a term efficiently. We first show how Maude can be used to get prototyping of abstract interpretations "for free." Building on the meta-logic facilities of Maude, we further develop a tool that automatically checks and abstract interpretation against a set of user-defined properties. This can be used to select an appropriate abstract interpretation, to characterize the specified loss of information during abstraction, and to compare different abstractions with each other.

Caveolin Transfection Results in Caveolae Formation but Not Apical Sorting of Glycosylphosphatidylinositol (GPI)-anchored Proteins in Epithelial Cells

PubMed Central

Lipardi, Concetta; Mora, Rosalia; Colomer, Veronica; Paladino, Simona; Nitsch, Lucio; Rodriguez-Boulan, Enrique; Zurzolo, Chiara

1998-01-01

Most epithelial cells sort glycosylphosphatidylinositol (GPI)-anchored proteins to the apical surface. The “raft” hypothesis, based on data mainly obtained in the prototype cell line MDCK, postulates that apical sorting depends on the incorporation of apical proteins into cholesterol/glycosphingolipid (GSL) rafts, rich in the cholesterol binding protein caveolin/VIP21, in the Golgi apparatus. Fischer rat thyroid (FRT) cells constitute an ideal model to test this hypothesis, since they missort both endogenous and transfected GPI- anchored proteins to the basolateral plasma membrane and fail to incorporate them into cholesterol/glycosphingolipid clusters. Because FRT cells lack caveolin, a major component of the caveolar coat that has been proposed to have a role in apical sorting of GPI- anchored proteins (Zurzolo, C., W. Van't Hoff, G. van Meer, and E. Rodriguez-Boulan. 1994. EMBO [Eur. Mol. Biol. Organ.] J. 13:42–53.), we carried out experiments to determine whether the lack of caveolin accounted for the sorting/clustering defect of GPI- anchored proteins. We report here that FRT cells lack morphological caveolae, but, upon stable transfection of the caveolin1 gene (cav1), form typical flask-shaped caveolae. However, cav1 expression did not redistribute GPI-anchored proteins to the apical surface, nor promote their inclusion into cholesterol/GSL rafts. Our results demonstrate that the absence of caveolin1 and morphologically identifiable caveolae cannot explain the inability of FRT cells to sort GPI-anchored proteins to the apical domain. Thus, FRT cells may lack additional factors required for apical sorting or for the clustering with GSLs of GPI-anchored proteins, or express factors that inhibit these events. Alternatively, cav1 and caveolae may not be directly involved in these processes. PMID:9456321

Hoechst fluorescence intensity can be used to separate viable bromodeoxyuridine-labeled cells from viable non-bromodeoxyuridine-labeled cells

NASA Technical Reports Server (NTRS)

Mozdziak, P. E.; Pulvermacher, P. M.; Schultz, E.; Schell, K.

2000-01-01

BACKGROUND: 5-Bromo-2'-deoxyuridine (BrdU) is a powerful compound to study the mitotic activity of a cell. Most techniques that identify BrdU-labeled cells require conditions that kill the cells. However, the fluorescence intensity of the membrane-permeable Hoechst dyes is reduced by the incorporation of BrdU into DNA, allowing the separation of viable BrdU positive (BrdU+) cells from viable BrdU negative (BrdU-) cells. METHODS: Cultures of proliferating cells were supplemented with BrdU for 48 h and other cultures of proliferating cells were maintained without BrdU. Mixtures of viable BrdU+ and viable BrdU- cells from the two proliferating cultures were stained with Hoechst 33342. The viable BrdU+ and BrdU- cells were sorted into different fractions from a mixture of BrdU+ and BrdU- cells based on Hoechst fluorescence intensity and the ability to exclude the vital dye, propidium iodide. Subsequently, samples from the original mixture, the sorted BrdU+ cell population, and the sorted BrdU- cell population were immunostained using an anti-BrdU monoclonal antibody and evaluated using flow cytometry. RESULTS: Two mixtures consisting of approximately 55% and 69% BrdU+ cells were sorted into fractions consisting of greater than 93% BrdU+ cells and 92% BrdU- cells. The separated cell populations were maintained in vitro after sorting to demonstrate their viability. CONCLUSIONS: Hoechst fluorescence intensity in combination with cell sorting is an effective tool to separate viable BrdU+ from viable BrdU- cells for further study. The separated cell populations were maintained in vitro after sorting to demonstrate their viability. Copyright 2000 Wiley-Liss, Inc.

Denni Algorithm An Enhanced Of SMS (Scan, Move and Sort) Algorithm

NASA Astrophysics Data System (ADS)

Aprilsyah Lubis, Denni; Salim Sitompul, Opim; Marwan; Tulus; Andri Budiman, M.

2017-12-01

Sorting has been a profound area for the algorithmic researchers, and many resources are invested to suggest a more working sorting algorithm. For this purpose many existing sorting algorithms were observed in terms of the efficiency of the algorithmic complexity. Efficient sorting is important to optimize the use of other algorithms that require sorted lists to work correctly. Sorting has been considered as a fundamental problem in the study of algorithms that due to many reasons namely, the necessary to sort information is inherent in many applications, algorithms often use sorting as a key subroutine, in algorithm design there are many essential techniques represented in the body of sorting algorithms, and many engineering issues come to the fore when implementing sorting algorithms., Many algorithms are very well known for sorting the unordered lists, and one of the well-known algorithms that make the process of sorting to be more economical and efficient is SMS (Scan, Move and Sort) algorithm, an enhancement of Quicksort invented Rami Mansi in 2010. This paper presents a new sorting algorithm called Denni-algorithm. The Denni algorithm is considered as an enhancement on the SMS algorithm in average, and worst cases. The Denni algorithm is compared with the SMS algorithm and the results were promising.

Rmax: A systematic approach to evaluate instrument sort performance using center stream catch☆

PubMed Central

Riddell, Andrew; Gardner, Rui; Perez-Gonzalez, Alexis; Lopes, Telma; Martinez, Lola

2015-01-01

Sorting performance can be evaluated with regard to Purity, Yield and/or Recovery of the sorted fraction. Purity is a check on the quality of the sample and the sort decisions made by the instrument. Recovery and Yield definitions vary with some authors regarding both as how efficient the instrument is at sorting the target particles from the original sample, others distinguishing Recovery from Yield, where the former is used to describe the accuracy of the instrument’s sort count. Yield and Recovery are often neglected, mostly due to difficulties in their measurement. Purity of the sort product is often cited alone but is not sufficient to evaluate sorting performance. All of these three performance metrics require re-sampling of the sorted fraction. But, unlike Purity, calculating Yield and/or Recovery calls for the absolute counting of particles in the sorted fraction, which may not be feasible, particularly when dealing with rare populations and precious samples. In addition, the counting process itself involves large errors. Here we describe a new metric for evaluating instrument sort Recovery, defined as the number of particles sorted relative to the number of original particles to be sorted. This calculation requires only measuring the ratios of target and non-target populations in the original pre-sort sample and in the waste stream or center stream catch (CSC), avoiding re-sampling the sorted fraction and absolute counting. We called this new metric Rmax, since it corresponds to the maximum expected Recovery for a particular set of instrument parameters. Rmax is ideal to evaluate and troubleshoot the optimum drop-charge delay of the sorter, or any instrument related failures that will affect sort performance. It can be used as a daily quality control check but can be particularly useful to assess instrument performance before single-cell sorting experiments. Because we do not perturb the sort fraction we can calculate Rmax during the sort process, being especially valuable to check instrument performance during rare population sorts. PMID:25747337

Dreaming of Graben in the Labyrinth of the Night

NASA Image and Video Library

2016-06-29

Noctis Labyrinthus is a highly tectonized region immediately to the west of Valles Marineris. It formed when Mars' crust stretched itself apart. In this region, the crust first stretched in a north-south direction (as evidenced by the east-west trending scarp) and then in an east-west direction (as evidenced by the north-south trending smaller scarps). This sort of tectonic stretching creates faults in the crust (cracks along with masses of rock slide. This process is totally unrelated to Earth's plate tectonics.). The lower portions between faults are called "grabens" and the interspersed higher portions are called "horsts." The Basin and Range tectonic province of the western United States is a close Earth analog to Noctis Labyrinthus, which is Latin for "labyrinth of the night." http://photojournal.jpl.nasa.gov/catalog/PIA20740

Lunar and terrestrial crust formation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Walker, D.

1983-11-15

Planetary crusts may be accreted, produced in primordial differentiation, or built up piecemeal by serial magmatism. The existence of old, polygenetic, laterally heterogeneous, partial melt rocks in the lunar highlands suggests that the moon produced its early crust by serial magmatism. This view can be reconciled with lunar Eu anomalies, previously thought to support the magma ocean model of crust formation, if complications in the fractionation of mare basalts are reconized. Phase equilibrium and magmatic density information for mare basalts suggest a model in which plagioclase fractionation can occur even though plagioclase is not a near-liquidus phase. The crytic fractionationmore » of clinopryoxene in MORB provides a precedent for this model. The necessity for a lunar magma ocean is questioned, but a role for a terrestrial magma ocean of sorts at depth is suggested.« less

Fracture Energy-Based Brittleness Index Development and Brittleness Quantification by Pre-peak Strength Parameters in Rock Uniaxial Compression

NASA Astrophysics Data System (ADS)

Munoz, H.; Taheri, A.; Chanda, E. K.

2016-12-01

Brittleness is a fundamental mechanical rock property critical to many civil engineering works, mining development projects and mineral exploration operations. However, rock brittleness is a concept yet to be investigated as there is not any unique criterion available, widely accepted by rock engineering community able to describe rock brittleness quantitatively. In this study, new brittleness indices were developed based on fracture strain energy quantities obtained from the complete stress-strain characteristics of rocks. In doing so, different rocks having unconfined compressive strength values ranging from 7 to 215 MPa were examined in a series of quasi-static uniaxial compression tests after properly implementing lateral-strain control in a closed-loop system to apply axial load to rock specimen. This testing method was essential to capture post-peak regime of the rocks since a combination of class I-II or class II behaviour featured post-peak stress-strain behaviour. Further analysis on the post-peak strain localisation, stress-strain characteristics and the fracture pattern causing class I-II and class II behaviour were undertaken by analysing the development of field of strains in the rocks via three-dimensional digital image correlation. Analysis of the results demonstrated that pre-peak stress-strain brittleness indices proposed solely based on pre-peak stress-strain behaviour do not show any correlation with any of pre-peak rock mechanical parameters. On the other hand, the proposed brittleness indices based on pre-peak and post-peak stress-strain relations were found to competently describe an unambiguous brittleness scale against rock deformation and strength parameters such as the elastic modulus, the crack damage stress and the peak stress relevant to represent failure process.

Chip-based device for parallel sorting, amplification, detection, and identification of nucleic acid subsequences

DOE Office of Scientific and Technical Information (OSTI.GOV)

Beer, Neil Reginald; Colston, Jr, Billy W.

An apparatus for chip-based sorting, amplification, detection, and identification of a sample having a planar substrate. The planar substrate is divided into cells. The cells are arranged on the planar substrate in rows and columns. Electrodes are located in the cells. A micro-reactor maker produces micro-reactors containing the sample. The micro-reactor maker is positioned to deliver the micro-reactors to the planar substrate. A microprocessor is connected to the electrodes for manipulating the micro-reactors on the planar substrate. A detector is positioned to interrogate the sample contained in the micro-reactors.

75 FR 37430 - Plymouth Rock Energy, LLC; Supplemental Notice That Initial Market-Based Rate Filing Includes...

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2010-06-29

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Stream-based Hebbian eigenfilter for real-time neuronal spike discrimination

PubMed Central

2012-01-01

Background Principal component analysis (PCA) has been widely employed for automatic neuronal spike sorting. Calculating principal components (PCs) is computationally expensive, and requires complex numerical operations and large memory resources. Substantial hardware resources are therefore needed for hardware implementations of PCA. General Hebbian algorithm (GHA) has been proposed for calculating PCs of neuronal spikes in our previous work, which eliminates the needs of computationally expensive covariance analysis and eigenvalue decomposition in conventional PCA algorithms. However, large memory resources are still inherently required for storing a large volume of aligned spikes for training PCs. The large size memory will consume large hardware resources and contribute significant power dissipation, which make GHA difficult to be implemented in portable or implantable multi-channel recording micro-systems. Method In this paper, we present a new algorithm for PCA-based spike sorting based on GHA, namely stream-based Hebbian eigenfilter, which eliminates the inherent memory requirements of GHA while keeping the accuracy of spike sorting by utilizing the pseudo-stationarity of neuronal spikes. Because of the reduction of large hardware storage requirements, the proposed algorithm can lead to ultra-low hardware resources and power consumption of hardware implementations, which is critical for the future multi-channel micro-systems. Both clinical and synthetic neural recording data sets were employed for evaluating the accuracy of the stream-based Hebbian eigenfilter. The performance of spike sorting using stream-based eigenfilter and the computational complexity of the eigenfilter were rigorously evaluated and compared with conventional PCA algorithms. Field programmable logic arrays (FPGAs) were employed to implement the proposed algorithm, evaluate the hardware implementations and demonstrate the reduction in both power consumption and hardware memories achieved by the streaming computing Results and discussion Results demonstrate that the stream-based eigenfilter can achieve the same accuracy and is 10 times more computationally efficient when compared with conventional PCA algorithms. Hardware evaluations show that 90.3% logic resources, 95.1% power consumption and 86.8% computing latency can be reduced by the stream-based eigenfilter when compared with PCA hardware. By utilizing the streaming method, 92% memory resources and 67% power consumption can be saved when compared with the direct implementation of GHA. Conclusion Stream-based Hebbian eigenfilter presents a novel approach to enable real-time spike sorting with reduced computational complexity and hardware costs. This new design can be further utilized for multi-channel neuro-physiological experiments or chronic implants. PMID:22490725

Sorting waves and associated eigenvalues

NASA Astrophysics Data System (ADS)

Carbonari, Costanza; Colombini, Marco; Solari, Luca

2017-04-01

The presence of mixed sediment always characterizes gravel bed rivers. Sorting processes take place during bed load transport of heterogeneous sediment mixtures. The two main elements necessary to the occurrence of sorting are the heterogeneous character of sediments and the presence of an active sediment transport. When these two key ingredients are simultaneously present, the segregation of bed material is consistently detected both in the field [7] and in laboratory [3] observations. In heterogeneous sediment transport, bed altimetric variations and sorting always coexist and both mechanisms are independently capable of driving the formation of morphological patterns. Indeed, consistent patterns of longitudinal and transverse sorting are identified almost ubiquitously. In some cases, such as bar formation [2] and channel bends [5], sorting acts as a stabilizing effect and therefore the dominant mechanism driving pattern formation is associated with bed altimetric variations. In other cases, such as longitudinal streaks, sorting enhances system instability and can therefore be considered the prevailing mechanism. Bedload sheets, first observed by Khunle and Southard [1], represent another classic example of a morphological pattern essentially triggered by sorting, as theoretical [4] and experimental [3] results suggested. These sorting waves cause strong spatial and temporal fluctuations of bedload transport rate typical observed in gravel bed rivers. The problem of bed load transport of a sediment mixture is formulated in the framework of a 1D linear stability analysis. The base state consists of a uniform flow in an infinitely wide channel with active bed load transport. The behaviour of the eigenvalues associated with fluid motion, bed evolution and sorting processes in the space of the significant flow and sediment parameters is analysed. A comparison is attempted with the results of the theoretical analysis of Seminara Colombini and Parker [4] and Stecca, Siviglia and Blom [6]. [1] Kuhnle, R.A. and Southard, J.B. 1988. Bed Load Transport Fluctuations in a Gravel Bed Laboratory Channel. Water Resources Research, 24(2), 247-260. [2] Lanzoni, S. and Tubino, M. 1999. Grain sorting and bar instability. Journal of Fluid Mechanics. 393, 149-174. [3] Recking, A., Frey, P., Paquier, A. and Belleudy, P. 2009. An experimental investigation of mechanisms involved in bed load sheet production and migration. Journal of Geophysical Research, 114, F03010. [4] Seminara, G., Colombini, M. and Parker, G. 1996. Nearly pure sorting waves and formation of bedload sheets. Journal of Fluid Mechanics. 312, (1996), 253-278. [5] Seminara, G., Solari, L. and Tubino, M. 1997. Finite amplitude scour and grain sorting in wide channel bends. XXVII IAHR Congress, San Francisco, 1445-1450. [6] Stecca, G., Siviglia, A. and Blom, A. 2014. Mathematical analysis of the Saint-Venant-Hirano model for mixed-sediment morphodynamics. Water Resources Research, 50, 7563-7589. [7] Whiting, P.J., Dietrich, W.E., Leopold, L. B., Drake, T. G. and Shreve, R.L. 1988. Bedload sheets in heterogeneous sediment. Geology, 16, 105-108.

A real-time traffic control method for the intersection with pre-signals under the phase swap sorting strategy

PubMed Central

Bie, Yiming; Wang, Yinhai

2017-01-01

To deal with the conflicts between left-turn and through traffic streams and increase the discharge capacity, this paper addresses the pre-signal which is implemented at a signalized intersection. Such an intersection with pre-signal is termed as a tandem intersection. For the tandem intersection, phase swap sorting strategy is deemed as the most effective phasing scheme in view of some exclusive merits, such as easier compliance of drivers, and shorter sorting area. However, a major limitation of the phase swap sorting strategy is not considered in previous studies: if one or more vehicle is left at the sorting area after the signal light turns to red, the capacity of the approach would be dramatically dropped. Besides, previous signal control studies deal with a fixed timing plan that is not adaptive with the fluctuation of traffic flows. Therefore, to cope with these two gaps, this paper firstly takes an in-depth analysis of the traffic flow operations at the tandem intersection. Secondly, three groups of loop detectors are placed to obtain the real-time vehicle information for adaptive signalization. The lane selection behavior in the sorting area is considered to set the green time for intersection signals. With the objective of minimizing the vehicle delay, the signal control parameters are then optimized based on a dynamic programming method. Finally, numerical experiments show that average vehicle delay and maximum queue length can be reduced under all scenarios. PMID:28531198

A real-time traffic control method for the intersection with pre-signals under the phase swap sorting strategy.

PubMed

Bie, Yiming; Liu, Zhiyuan; Wang, Yinhai

2017-01-01

To deal with the conflicts between left-turn and through traffic streams and increase the discharge capacity, this paper addresses the pre-signal which is implemented at a signalized intersection. Such an intersection with pre-signal is termed as a tandem intersection. For the tandem intersection, phase swap sorting strategy is deemed as the most effective phasing scheme in view of some exclusive merits, such as easier compliance of drivers, and shorter sorting area. However, a major limitation of the phase swap sorting strategy is not considered in previous studies: if one or more vehicle is left at the sorting area after the signal light turns to red, the capacity of the approach would be dramatically dropped. Besides, previous signal control studies deal with a fixed timing plan that is not adaptive with the fluctuation of traffic flows. Therefore, to cope with these two gaps, this paper firstly takes an in-depth analysis of the traffic flow operations at the tandem intersection. Secondly, three groups of loop detectors are placed to obtain the real-time vehicle information for adaptive signalization. The lane selection behavior in the sorting area is considered to set the green time for intersection signals. With the objective of minimizing the vehicle delay, the signal control parameters are then optimized based on a dynamic programming method. Finally, numerical experiments show that average vehicle delay and maximum queue length can be reduced under all scenarios.

Sorting of the Neuroendocrine Secretory Protein Secretogranin II into the Regulated Secretory Pathway

PubMed Central

Courel, Maïté; Vasquez, Michael S.; Hook, Vivian Y.; Mahata, Sushil K.; Taupenot, Laurent

2008-01-01

Secretogranin II (SgII) belongs to the granin family of prohormones widely distributed in dense-core secretory granules (DCGs) of endocrine, neuroendocrine, and neuronal cells, including sympathoadrenal chromaffin cells. The mechanisms by which secretory proteins, and granins in particular, are sorted into the regulated secretory pathway are unsettled. We designed a strategy based on novel chimeric forms of human SgII fused to fluorescent (green fluorescent protein) or chemiluminescent (embryonic alkaline phosphatase) reporters to identify trafficking determinants mediating DCG targeting of SgII in sympathoadrenal cells. Three-dimensional deconvolution fluorescence microscopy and secretagogue-stimulated release studies demonstrate that SgII chimeras are correctly targeted to DCGs and released by exocytosis in PC12 and primary chromaffin cells. Results from a Golgi-retained mutant form of SgII suggest that sorting of SgII into DCGs depends on a saturable sorting machinery at the trans-Golgi/trans-Golgi network. Truncation analyses reveal the presence of DCG-targeting signals within both the N- and C-terminal regions of SgII, with the putative α-helix-containing SgII-(25-41) and SgII-(334-348) acting as sufficient, independent sorting domains. This study defines sequence features of SgII mediating vesicular targeting in sympathoadrenal cells and suggests a mechanism by which discrete domains of the molecule function in sorting, perhaps by virtue of a particular arrangement in tertiary structure and/or interaction with a specific component of the DCG membrane. PMID:18299326

Sorting of the neuroendocrine secretory protein Secretogranin II into the regulated secretory pathway: role of N- and C-terminal alpha-helical domains.

PubMed

Courel, Maïté; Vasquez, Michael S; Hook, Vivian Y; Mahata, Sushil K; Taupenot, Laurent

2008-04-25

Secretogranin II (SgII) belongs to the granin family of prohormones widely distributed in dense-core secretory granules (DCGs) of endocrine, neuroendocrine, and neuronal cells, including sympathoadrenal chromaffin cells. The mechanisms by which secretory proteins, and granins in particular, are sorted into the regulated secretory pathway are unsettled. We designed a strategy based on novel chimeric forms of human SgII fused to fluorescent (green fluorescent protein) or chemiluminescent (embryonic alkaline phosphatase) reporters to identify trafficking determinants mediating DCG targeting of SgII in sympathoadrenal cells. Three-dimensional deconvolution fluorescence microscopy and secretagogue-stimulated release studies demonstrate that SgII chimeras are correctly targeted to DCGs and released by exocytosis in PC12 and primary chromaffin cells. Results from a Golgi-retained mutant form of SgII suggest that sorting of SgII into DCGs depends on a saturable sorting machinery at the trans-Golgi/trans-Golgi network. Truncation analyses reveal the presence of DCG-targeting signals within both the N- and C-terminal regions of SgII, with the putative alpha-helix-containing SgII-(25-41) and SgII-(334-348) acting as sufficient, independent sorting domains. This study defines sequence features of SgII mediating vesicular targeting in sympathoadrenal cells and suggests a mechanism by which discrete domains of the molecule function in sorting, perhaps by virtue of a particular arrangement in tertiary structure and/or interaction with a specific component of the DCG membrane.

The Case for Absolute Ligand Discrimination: Modeling Information Processing and Decision by Immune T Cells

NASA Astrophysics Data System (ADS)

François, Paul; Altan-Bonnet, Grégoire

2016-03-01

Some cells have to take decision based on the quality of surroundings ligands, almost irrespective of their quantity, a problem we name "absolute discrimination". An example of absolute discrimination is recognition of not-self by immune T Cells. We show how the problem of absolute discrimination can be solved by a process called "adaptive sorting". We review several implementations of adaptive sorting, as well as its generic properties such as antagonism. We show how kinetic proofreading with negative feedback implement an approximate version of adaptive sorting in the immune context. Finally, we revisit the decision problem at the cell population level, showing how phenotypic variability and feedbacks between population and single cells are crucial for proper decision.

A 1.375-approximation algorithm for sorting by transpositions.

PubMed

Elias, Isaac; Hartman, Tzvika

2006-01-01

Sorting permutations by transpositions is an important problem in genome rearrangements. A transposition is a rearrangement operation in which a segment is cut out of the permutation and pasted in a different location. The complexity of this problem is still open and it has been a 10-year-old open problem to improve the best known 1.5-approximation algorithm. In this paper, we provide a 1.375-approximation algorithm for sorting by transpositions. The algorithm is based on a new upper bound on the diameter of 3-permutations. In addition, we present some new results regarding the transposition diameter: we improve the lower bound for the transposition diameter of the symmetric group and determine the exact transposition diameter of simple permutations.

Design and Development of a High Speed Sorting System Based on Machine Vision Guiding

NASA Astrophysics Data System (ADS)

Zhang, Wenchang; Mei, Jiangping; Ding, Yabin

In this paper, a vision-based control strategy to perform high speed pick-and-place tasks on automation product line is proposed, and relevant control software is develop. Using Delta robot to control a sucker to grasp disordered objects from one moving conveyer and then place them on the other in order. CCD camera gets one picture every time the conveyer moves a distance of ds. Objects position and shape are got after image processing. Target tracking method based on "Servo motor + synchronous conveyer" is used to fulfill the high speed porting operation real time. Experiments conducted on Delta robot sorting system demonstrate the efficiency and validity of the proposed vision-control strategy.

ROENTGEN: case-based reasoning and radiation therapy planning.

PubMed Central

Berger, J.

1992-01-01

ROENTGEN is a design assistant for radiation therapy planning which uses case-based reasoning, an artificial intelligence technique. It learns both from specific problem-solving experiences and from direct instruction from the user. The first sort of learning is the normal case-based method of storing problem solutions so that they can be reused. The second sort is necessary because ROENTGEN does not, initially, have an internal model of the physics of its problem domain. This dependence on explicit user instruction brings to the forefront representational questions regarding indexing, failure definition, failure explanation and repair. This paper presents the techniques used by ROENTGEN in its knowledge acquisition and design activities. PMID:1482869

Impedance-Based Pre-Stress Monitoring of Rock Bolts Using a Piezoceramic-Based Smart Washer-A Feasibility Study.

PubMed

Wang, Bo; Huo, Linsheng; Chen, Dongdong; Li, Weijie; Song, Gangbing

2017-01-27

Pre-stress degradation or looseness of rock bolts in mining or tunnel engineering threatens the stability and reliability of the structures. In this paper, an innovative piezoelectric device named a "smart washer" with the impedance method is proposed with the aim of developing a real-time device to monitor the pre-stress level of rock bolts. The proposed method was verified through tests on a rock bolt specimen. By applying high-frequency sweep excitations (typically >30 kHz) to the smart washer that was installed on the rock bolt specimen, we observed that the variation in impedance signatures indicated the rock bolt pre-stress status. With the degradation of rock bolt pre-stress, the frequency in the dominating peak of the real part of the electrical impedance signature increased. To quantify the effectiveness of the proposed technique, a normalized root mean square deviation (RMSD) index was developed to evaluate the degradation level of the rock bolt pre-stress. The experimental results demonstrated that the normalized RMSD-based looseness index, which was computed from the impedance value detected by the "smart washer", increased with loss of the pre-stress of the rock bolt. Therefore, the proposed method can effectively detect the degradation of rock bolt pre-stress, as demonstrated by experiments.

Impedance-Based Pre-Stress Monitoring of Rock Bolts Using a Piezoceramic-Based Smart Washer—A Feasibility Study

PubMed Central

Wang, Bo; Huo, Linsheng; Chen, Dongdong; Li, Weijie; Song, Gangbing

2017-01-01

Pre-stress degradation or looseness of rock bolts in mining or tunnel engineering threatens the stability and reliability of the structures. In this paper, an innovative piezoelectric device named a “smart washer” with the impedance method is proposed with the aim of developing a real-time device to monitor the pre-stress level of rock bolts. The proposed method was verified through tests on a rock bolt specimen. By applying high-frequency sweep excitations (typically >30 kHz) to the smart washer that was installed on the rock bolt specimen, we observed that the variation in impedance signatures indicated the rock bolt pre-stress status. With the degradation of rock bolt pre-stress, the frequency in the dominating peak of the real part of the electrical impedance signature increased. To quantify the effectiveness of the proposed technique, a normalized root mean square deviation (RMSD) index was developed to evaluate the degradation level of the rock bolt pre-stress. The experimental results demonstrated that the normalized RMSD-based looseness index, which was computed from the impedance value detected by the “smart washer”, increased with loss of the pre-stress of the rock bolt. Therefore, the proposed method can effectively detect the degradation of rock bolt pre-stress, as demonstrated by experiments. PMID:28134811

PoMo: An Allele Frequency-Based Approach for Species Tree Estimation

PubMed Central

De Maio, Nicola; Schrempf, Dominik; Kosiol, Carolin

2015-01-01

Incomplete lineage sorting can cause incongruencies of the overall species-level phylogenetic tree with the phylogenetic trees for individual genes or genomic segments. If these incongruencies are not accounted for, it is possible to incur several biases in species tree estimation. Here, we present a simple maximum likelihood approach that accounts for ancestral variation and incomplete lineage sorting. We use a POlymorphisms-aware phylogenetic MOdel (PoMo) that we have recently shown to efficiently estimate mutation rates and fixation biases from within and between-species variation data. We extend this model to perform efficient estimation of species trees. We test the performance of PoMo in several different scenarios of incomplete lineage sorting using simulations and compare it with existing methods both in accuracy and computational speed. In contrast to other approaches, our model does not use coalescent theory but is allele frequency based. We show that PoMo is well suited for genome-wide species tree estimation and that on such data it is more accurate than previous approaches. PMID:26209413

Opto electronic tweezers based smart sweeper for cells/micro-particles sorting

NASA Astrophysics Data System (ADS)

Verma, R. S.; Kumar, N.

2018-04-01

We report on use of opto-electronic tweezers based sorting approach, termed as smart sweepers, for sorting the microscopic particles by using the Dielectrophoretic (DEP) force response of cells on applied a.c. bias frequency. The applied a.c. bias was kept in negative DEP region, close to the crossover frequency of one of the particles. A line shaped intensity pattern, generated by a cylindrical lens, was scanned across the mixture sample. The particles whose cross over frequency was close to the applied bias frequency, experienced negligible negative DEP(n-DEP) force. On the other hand, the other type of particle experienced large repelling force and were forced to move along the scanning direction of the line shaped intensity profile. We, as a proof of concept, demonstrated the working principle of opto electronic smart sweepers by sweeping out the polystyrene particles from a mixture consisting of polystyrene microspheres (PSM) and red blood cells (RBCs) and leaving RBCs in the region of interest.

Binary-space-partitioned images for resolving image-based visibility.

PubMed

Fu, Chi-Wing; Wong, Tien-Tsin; Tong, Wai-Shun; Tang, Chi-Keung; Hanson, Andrew J

2004-01-01

We propose a novel 2D representation for 3D visibility sorting, the Binary-Space-Partitioned Image (BSPI), to accelerate real-time image-based rendering. BSPI is an efficient 2D realization of a 3D BSP tree, which is commonly used in computer graphics for time-critical visibility sorting. Since the overall structure of a BSP tree is encoded in a BSPI, traversing a BSPI is comparable to traversing the corresponding BSP tree. BSPI performs visibility sorting efficiently and accurately in the 2D image space by warping the reference image triangle-by-triangle instead of pixel-by-pixel. Multiple BSPIs can be combined to solve "disocclusion," when an occluded portion of the scene becomes visible at a novel viewpoint. Our method is highly automatic, including a tensor voting preprocessing step that generates candidate image partition lines for BSPIs, filters the noisy input data by rejecting outliers, and interpolates missing information. Our system has been applied to a variety of real data, including stereo, motion, and range images.

Mesenchymal Stem Cells for Vascular Target Discovery in Breast Cancer-Associated Angiogenesis

DTIC Science & Technology

2005-09-01

demonstrating this marker as demonstrated by flow cytometry . These GFP+ MSCs were subsequently analyzed for expression of commonly reported markers of...phenotypically and genotypically analyzed by flow cytometry and gene chip analysis, respectively. We have also shown that MSCs can then be stimulated to...positive MSCs retrieved by collagenase digestion of the Matrigel plug and sorted by flow cytometry . Sorting of these retrieved cells based on co-expression

General Approach for Rock Classification Based on Digital Image Analysis of Electrical Borehole Wall Images

NASA Astrophysics Data System (ADS)

Linek, M.; Jungmann, M.; Berlage, T.; Clauser, C.

2005-12-01

Within the Ocean Drilling Program (ODP), image logging tools have been routinely deployed such as the Formation MicroScanner (FMS) or the Resistivity-At-Bit (RAB) tools. Both logging methods are based on resistivity measurements at the borehole wall and therefore are sensitive to conductivity contrasts, which are mapped in color scale images. These images are commonly used to study the structure of the sedimentary rocks and the oceanic crust (petrologic fabric, fractures, veins, etc.). So far, mapping of lithology from electrical images is purely based on visual inspection and subjective interpretation. We apply digital image analysis on electrical borehole wall images in order to develop a method, which augments objective rock identification. We focus on supervised textural pattern recognition which studies the spatial gray level distribution with respect to certain rock types. FMS image intervals of rock classes known from core data are taken in order to train textural characteristics for each class. A so-called gray level co-occurrence matrix is computed by counting the occurrence of a pair of gray levels that are a certain distant apart. Once the matrix for an image interval is computed, we calculate the image contrast, homogeneity, energy, and entropy. We assign characteristic textural features to different rock types by reducing the image information into a small set of descriptive features. Once a discriminating set of texture features for each rock type is found, we are able to discriminate the entire FMS images regarding the trained rock type classification. A rock classification based on texture features enables quantitative lithology mapping and is characterized by a high repeatability, in contrast to a purely visual subjective image interpretation. We show examples for the rock classification between breccias, pillows, massive units, and horizontally bedded tuffs based on ODP image data.

Sedimentary facies and depositional environments of early Mesozoic Newark Supergroup basins, eastern North America

USGS Publications Warehouse

Smoot, J.P.

1991-01-01

The early Mesozoic Newark Supergroup consists of continental sedimentary rocks and basalt flows that occupy a NE-trending belt of elongate basins exposed in eastern North America. The basins were filled over a period of 30-40 m.y. spanning the Late Triassic to Early Jurassic, prior to the opening of the north Atlantic Ocean. The sedimentary rocks are here divided into four principal lithofacies. The alluvial-fan facies includes deposits dominated by: (1) debris flows; (2) shallow braided streams; (3) deeper braided streams (with trough crossbeds); or (4) intense bioturbation or hyperconcentrated flows (tabular, unstratified muddy sandstone). The fluvial facies include deposits of: (1) shallow, ephemeral braided streams; (2) deeper, flashflooding, braided streams (with poor sorting and crossbeds); (3) perennial braided rivers; (4) meandering rivers; (5) meandering streams (with high suspended loads); (6) overbank areas or local flood-plain lakes; or (7) local streams and/or colluvium. The lacustrine facies includes deposits of: (1) deep perennial lakes; (2) shallow perennial lakes; (3) shallow ephemeral lakes; (4) playa dry mudflats; (5) salt-encrusted saline mudflats; or (6) vegetated mudflats. The lake margin clastic facies includes deposits of: (1) birdfoot deltas; (2) stacked Gilbert-type deltas; (3) sheet deltas; (4) wave-reworked alluvial fans; or (5) wave-sorted sand sheets. Coal deposits are present in the lake margin clastic and the lacustrine facies of Carnian age (Late Triassic) only in basins of south-central Virginia and North and South Carolina. Eolian deposits are known only from the basins in Nova Scotia and Connecticut. Evaporites (and their pseudomorphs) occur mainly in the northern basins as deposits of saline soils and less commonly of saline lakes, and some evaporite and alkaline minerals present in the Mesozoic rocks may be a result of later diagenesis. These relationships suggest climatic variations across paleolatitudes, more humid to the south where coal beds are preserved, and more arid in the north where evaporites and eolian deposits are common. Fluctuations in paleoclimate that caused lake levels to rise and fall in hydrologically closed basins are preserved as lacustrine cycles of various scales, including major shifts in the Late Triassic from a wet Carnian to an arid Norian. In contrast, fluvial deposits were mainly formed in response to the tectonic evolution of the basins, but to some extent also reflect climatic changes. The Newark Supergroup illustrates the complexity of rift-basin sedimentation and the problems that may arise from using a single modern analog for sedimentary deposition spanning millions of years. It also shows that a tremendous wealth of depositional, climatic, and tectonic information is preserved in ancient rift-basin deposits which can be recovered if the depositional processes of modern rift-basin deposits are understood. ?? 1991.

76 FR 69720 - NaturEner Rim Rock Wind Energy, LLC; Supplemental Notice That Initial Market-Based Rate Filing...

Federal Register 2010, 2011, 2012, 2013, 2014

2011-11-09

... DEPARTMENT OF ENERGY Federal Energy Regulatory Commission [ Docket No. ER12-295-000] NaturEner Rim Rock Wind Energy, LLC; Supplemental Notice That Initial Market-Based Rate Filing Includes Request for... NaturEner Rim Rock Wind Energy, LLC's application for market-based rate authority, with an accompanying...

Free-Flow Zone Electrophoresis of Peptides and Proteins in PDMS Microchip for Narrow pI Range Sample Prefractionation Coupled with Mass Spectrometry

PubMed Central

Song, Yong-Ak; Chan, Michael; Celio, Chris; Tannenbaum, Steven R.; Wishnok, John S.; Han, Jongyoon

2010-01-01

In this paper, we are evaluating the strategy of sorting peptides / proteins based on the charge to mass without resorting to ampholytes and / or isoelectric focusing, using a single- and two-step free-flow zone electrophoresis. We developed a simple fabrication method to create a salt bridge for free-flow zone electrophoresis in PDMS chips by surface printing a hydrophobic layer on a glass substrate. Since the surface-printed hydrophobic layer prevents plasma bonding between the PDMS chip and the substrate, an electrical junction gap can be created for free-flow zone electrophoresis. With this device, we demonstrated a separation of positive and negative peptides and proteins at a given pH in standard buffer systems, and validated the sorting result with LC/MS. Furthermore, we coupled two sorting steps via off-chip titration, and isolated peptides within specific pI ranges from sample mixtures, where the pI range was simply set by the pH values of the buffer solutions. This free-flow zone electrophoresis sorting device, with its simplicity of fabrication, and a sorting resolution of 0.5 pH unit, can potentially be a high-throughput sample fractionation tool for targeted proteomics using LC/MS. PMID:20163146

IB-LBM simulation on blood cell sorting with a micro-fence structure.

PubMed

Wei, Qiang; Xu, Yuan-Qing; Tian, Fang-bao; Gao, Tian-xin; Tang, Xiao-ying; Zu, Wen-Hong

2014-01-01

A size-based blood cell sorting model with a micro-fence structure is proposed in the frame of immersed boundary and lattice Boltzmann method (IB-LBM). The fluid dynamics is obtained by solving the discrete lattice Boltzmann equation, and the cells motion and deformation are handled by the immersed boundary method. A micro-fence consists of two parallel slope post rows which are adopted to separate red blood cells (RBCs) from white blood cells (WBCs), in which the cells to be separated are transported one after another by the flow into the passageway between the two post rows. Effected by the cross flow, RBCs are schemed to get through the pores of the nether post row since they are smaller and more deformable compared with WBCs. WBCs are required to move along the nether post row till they get out the micro-fence. Simulation results indicate that for a fix width of pores, the slope angle of the post row plays an important role in cell sorting. The cells mixture can not be separated properly in a small slope angle, while obvious blockages by WBCs will take place to disturb the continuous cell sorting in a big slope angle. As an optimal result, an adaptive slope angle is found to sort RBCs form WBCs correctly and continuously.

Spike sorting of synchronous spikes from local neuron ensembles

PubMed Central

Pröpper, Robert; Alle, Henrik; Meier, Philipp; Geiger, Jörg R. P.; Obermayer, Klaus; Munk, Matthias H. J.

2015-01-01

Synchronous spike discharge of cortical neurons is thought to be a fingerprint of neuronal cooperativity. Because neighboring neurons are more densely connected to one another than neurons that are located further apart, near-synchronous spike discharge can be expected to be prevalent and it might provide an important basis for cortical computations. Using microelectrodes to record local groups of neurons does not allow for the reliable separation of synchronous spikes from different cells, because available spike sorting algorithms cannot correctly resolve the temporally overlapping waveforms. We show that high spike sorting performance of in vivo recordings, including overlapping spikes, can be achieved with a recently developed filter-based template matching procedure. Using tetrodes with a three-dimensional structure, we demonstrate with simulated data and ground truth in vitro data, obtained by dual intracellular recording of two neurons located next to a tetrode, that the spike sorting of synchronous spikes can be as successful as the spike sorting of nonoverlapping spikes and that the spatial information provided by multielectrodes greatly reduces the error rates. We apply the method to tetrode recordings from the prefrontal cortex of behaving primates, and we show that overlapping spikes can be identified and assigned to individual neurons to study synchronous activity in local groups of neurons. PMID:26289473

Geochemistry of sandstones from the Pliocene Gabir Formation, north Marsa Alam, Red Sea, Egypt: Implication for provenance, weathering and tectonic setting

NASA Astrophysics Data System (ADS)

Zaid, Samir M.

2015-02-01

Petrographic, major and trace element compositions of sandstones from the Pliocene Gabir Formation, Central Eastern Desert, Egypt have been investigated to determine their provenance, intensity of paleo-weathering of the source rocks and their depositional tectonic setting. Gabir Formation is composed mainly of sandstones alternating with limestone and shale beds. The Gabir sandstone is yellowish gray to yellowish brown color, calcareous and fossiliferous. The composition of this formation refers to shallow warm agitated marine conditions. Texturally, Gabir sandstones are immature, poorly sorted and grain supported. Abundance of feldspars indicates rapid deposition of sediments from a nearby source rocks. Their average modal composition (Q71.35F16.6L12.05), classifies them as sublitharenite and arkose with subordinate litharenite and subarkose, which is also supported by geochemical study. Chemical analyses revealed that sandstones have high SiO2, K2O > Na2O, and low Fe2O3 values, which are consistent with the modal data. Also, sandstone samples are enriched in most trace elements such as Ba, Sr, Ni, Cr and Zr and depleted in U and Th. The petrography and geochemistry suggest that Gabir sandstones were deposited in an active continental margin basin. They were mainly derived from granitic and low grade metamorphic sources. The CIA values (41.69-74.84) of the Gabir sandstones indicate low to moderate degree of chemical weathering, which may reflect cold and/or arid climate conditions in the source area. The source rocks are probably identified to be Proterozoic granites, metagabbros and metavolcanics, which must have been exposed during rifting, initiated during Oligocene and continued till post Miocene.

Sr and Pb isotopic geochemistry of feldspars and implications for the growth of megacrysts in plutonic settings.

NASA Astrophysics Data System (ADS)

Munnikhuis, J.; Glazner, A. F.; Coleman, D. S.; Mills, R. D.

2015-12-01

Why megacrystic textures develop in silicic igneous rocks is still unknown. One hypothesis is that these crystals nucleate early in a magma chamber with a high liquid content. A supportive observation of this hypothesis is areas in plutons with high concentrations of megacrysts suggesting flow sorting. Another group of hypotheses suggest megacrystic textures form during protracted late-stage coarsening in a low-melt, interlocked matrix due to either thermal oscillations from incremental pluton emplacement, or Ostwald ripening. Isotopic analyses of large, euhedral K-feldspar megacrysts from the Cretaceous intrusive suites of the Sierra Nevada batholith (SNB) provide new insight into their origin. Megacrysts from the SNB reach the decimeter scale, are Or rich (85-90%), are perthitic, and host mineral inclusions of nearly all phases in the host rock. In-situ micro-drilling of transects, from core to rim, of the alkali feldspars provides material for Sr and Pb isotopic analyses by thermal ionization mass spectrometry (TIMS). Preliminary 87Sr/86Sr(i) isotopic data from samples from the Cathedral Peak Granodiorite, of the Tuolumne Intrusive Suite range from 0.706337 to 0.706452 (~1.6ɛSr) near the cores, whereas a sawtooth pattern with larger variability, 0.706179 to 0.706533 (~5ɛSr), occurs nears the rims. We interpret these preliminary data to indicate that the late portion of growth (i.e. crystal rim) was dominated by either cannibalism of small K-feldspar crystals with isotopic variability, or by addition of isotopically diverse late components to the magma. By comparing the Sr and Pb isotopic stratigraphy of megacrysts from a variety of rock matrices and different granitoids in the SNB isotopic trends can be evaluated to determine if crystals sizes are dependent on disequilibrium processes or grow at a steady state.

Parallel integer sorting with medium and fine-scale parallelism

NASA Technical Reports Server (NTRS)

Dagum, Leonardo

1993-01-01

Two new parallel integer sorting algorithms, queue-sort and barrel-sort, are presented and analyzed in detail. These algorithms do not have optimal parallel complexity, yet they show very good performance in practice. Queue-sort designed for fine-scale parallel architectures which allow the queueing of multiple messages to the same destination. Barrel-sort is designed for medium-scale parallel architectures with a high message passing overhead. The performance results from the implementation of queue-sort on a Connection Machine CM-2 and barrel-sort on a 128 processor iPSC/860 are given. The two implementations are found to be comparable in performance but not as good as a fully vectorized bucket sort on the Cray YMP.

Sort computation

NASA Technical Reports Server (NTRS)

Dorband, John E.

1988-01-01

Sorting has long been used to organize data in preparation for further computation, but sort computation allows some types of computation to be performed during the sort. Sort aggregation and sort distribution are the two basic forms of sort computation. Sort aggregation generates an accumulative or aggregate result for each group of records and places this result in one of the records. An aggregate operation can be any operation that is both associative and commutative, i.e., any operation whose result does not depend on the order of the operands or the order in which the operations are performed. Sort distribution copies the value from a field of a specific record in a group into that field in every record of that group.

Ground-Water Geology and Hydrology of the Kern River Alluvial-Fan Area, California

USGS Publications Warehouse

Dale, R.H.; French, James J.; Gordon, G.V.

1966-01-01

The Kern River alluvial fan is the southernmost major alluvial fan built by the streams which drain the west side of the Sierra Nevada. The climate is semiarid with rainfall near 5 inches per year. Agricultural development within the area uses over half the 700,000 acre-feet per year flow of the Kern River, plus a considerable amount drawn from the ground-water reservoir particularly during periods of low flow. The area overlies a deep structural trough between crystalline rocks of the Sierra Nevada and the marine rocks of Tertiary age of the Coast Ranges. The top horizon of the marine rocks that lap on the Sierra Nevada block underlies the report area at an average depth of 2,000 feet. The overlying continental deposits that form the groundwater reservoir consist of alluvial-fan and lacustrine deposits. The continental deposits are subdivided into three lithologic units on the basis of grain size and sorting. The gravel and clay unit consists of older alluvial-fan material, of both Sierra Nevada and Coast Range provenance, that shows extremely poor sorting with some diagenetic decomposition through chemical weathering. The fine sand to clay unit consists principally of fine sand, silt, and clay deposited in a lacustrine environment, although some of the unit is of alluvial-fan origin derived from poorly consolidated marine shale of the Coast Ranges. Within the fine sand to clay unit three distinct clays, which affect ground-water conditions, can be recognized. The gravel to medium sand unit consists of unweathered alluvial-fan material that shows much better sorting than the gravel and clay unit. In the eastern part of the area the basal part of this unit is a gravel lentil that can be traced in the subsurface more than 250 square miles. The overlying deposits consist principally of medium sand. In the western part of the area the unit is a heterogeneous gravel and sand unit. Permeability in Meinzer units of the gravel and clay unit ranges between 10 and 100 with specific yield about 5 percent. For the fine sand to clay unit the permeability ranges between 0.0001 and 100 with about 10 percent specific yield. The gravel to medium sand unit has permeabilities between 100 and 10,000, and specific yield is about 15 percent. For the period 1955-59 the annual gross surface-water supply was estimated at 421,000 acre-feet and pumpage was 664,000 acre-feet, giving a rounded total supply of 1,100,000 acre-feet. Annual consumptive use was estimated at 750,000 acre-feet and annual infiltration at 350,000 acre-feet. The approximate 300,000 acre-feet difference between 664,000 acre-feet pumped and 350,000 acre-feet infiltrated has caused an annual decline in water levels of up to 7 feet. Ground water occurs under both unconfined and confined conditions within the report area. In general, the gravel to medium sand unit contains unconfined water, and the other two units contain confined water. Pumping is less intense in the Kern River fan area than in the adjoining areas to the north or south. This fact, plus infiltration from the Kern River, results in ground-water movement being principally out of the area. There is a ground-water divide that approximately underlies the Kern River. South of the river the flow spreads out semicircularly from the river, and north of the river the flow is linear to the northwest. Based on chemical quality the ground water has been divided areally into (1) east side, (2) west side, and (3) axial water. With the exception of two areas of comparable size northwest of Bakersfield and a much smaller area southeast of that city where ground water is somewhat saline, east-side ground water is generally of the calcium bicarbonate and calcium sodium bicarbonate type of low to medium salinity. The chemical character of east-side ground water is necessarily related to that of Kern River water, the principal source of recharge, and water of intermittent streams which drain the dissected upland

Critical role of the sorting polymer in carbon nanotube-based minority carrier devices

DOE PAGES

Mallajosyula, Arun T.; Nie, Wanyi; Gupta, Gautam; ...

2016-11-27

A prerequisite for carbon nanotube-based optoelectronic devices is the ability to sort them into a pure semiconductor phase. One of the most common sorting routes is enabled through using specific wrapping polymers. Here we show that subtle changes in the polymer structure can have a dramatic influence on the figures of merit of a carbon nanotube-based photovoltaic device. By comparing two commonly used polyfluorenes (PFO and PFO-BPy) for wrapping (7,5) and (6,5) chirality SWCNTs, we demonstrate that they have contrasting effects on the device efficiency. We attribute this to the differences in their ability to efficiently transfer charge. Although PFOmore » may act as an efficient interfacial layer at the anode, PFO-BPy, having the additional pyridine side groups, forms a high resistance layer degrading the device efficiency. By comparing PFO|C 60 and C 60-only devices, we found that presence of a PFO layer at low optical densities resulted in the increase of all three solar cell parameters, giving nearly an order of magnitude higher efficiency over that of C 60-only devices. In addition, with a relatively higher contribution to photocurrent from the PFO-C 60 interface, an open circuit voltage of 0.55 V was obtained for PFO-(7,5)-C 60 devices. On the other hand, PFO-BPy does not affect the open circuit voltage but drastically reduces the short circuit current density. Lastly, these results indicate that the charge transport properties and energy levels of the sorting polymers have to be taken into account to fully understand their effect on carbon nanotube-based solar cells.« less

Derivation of sorting programs

NASA Technical Reports Server (NTRS)

Varghese, Joseph; Loganantharaj, Rasiah

1990-01-01

Program synthesis for critical applications has become a viable alternative to program verification. Nested resolution and its extension are used to synthesize a set of sorting programs from their first order logic specifications. A set of sorting programs, such as, naive sort, merge sort, and insertion sort, were successfully synthesized starting from the same set of specifications.

Geology of the Alaska-Juneau lode system, Alaska

USGS Publications Warehouse

Twenhofel, William Stephens

1952-01-01

The Alaska-Juneau lode system for many years was one of the worlds leading gold-producing areas. Total production from the years 1893 to 1946 has amounted to about 94 million dollars, with principal values in contained gold but with some silver and lead values. The principal mine is the Alaska-Juneau mine, from which the lode system takes its name. The lode system is a part of a larger gold-bearing belt, generally referred to as the Juneau gold belt, along the western border of the Coast Range batholith. The rocks of the Alaska-Juneau lode system consist of a monoclinal sequence of steeply northeasterly dipping volcanic, state, and schist rocks, all of which have been metamorphosed by dynamic and thermal processes attendant with the intrusion of the Coast Range batholith. The rocks form a series of belts that trend northwest parallel to the Coast Range. In addition to the Coast Range batholith lying a mile to the east of the lode system, there are numerous smaller intrusives, all of which are sill-like in form and are thus conformable to the regional structure. The bedded rocks are Mesozoic in age; the Coast Range batholith is Upper Jurassic and Lower Cretaceous in age. Some of the smaller intrusives pre-date the batholith, others post-date it. All of the rocks are cut by steeply dipping faults. The Alaska-Juneau lode system is confined exclusively to the footwall portion of the Perseverance slate band. The slate band is composed of black slate and black phyllite with lesser amounts of thin-bedded quartzite. Intrusive into the slate band are many sill-like bodies of rocks generally referred to as meta-gabbro. The gold deposits of the lode system are found both within the slate rocks and the meta-gabbro rocks, and particularly in those places where meta-gabbro bodies interfinger with slate. Thus the ore bodies are found in and near the terminations of meta-gabbro bodies. The ore bodies are quartz stringer-lodes composed of a great number of quartz veins from 6 inches to 3 feet wide and extending along their strike and dip for several tens to hundreds of feet. In addition to quartz, the only other vein gangue mineral is ankerite. It occurs in small amounts along the borders of the quartz veins. Metallic vein minerals, in addition to native gold, are, in order of decreasing abundance, pyrrhotite, galena, sphalerite, and arsenopyrite. In the aggregate the metallic minerals comprise only 1 to 2 percent of the total amount of vein material. The wall rock, particularly the meta-gabbro, was profoundly altered by the vein-forming processes. The principal effects on the meta-gabbro were the addition of large amounts of soda, potash, titanium, carbon dioxide, and phosphorous, and the removal of considerable quantities of iron, magnesia, lime, and combined water. Silica also may have been decreased. The mineralogical changes involved in the alteration were the development of biotite and ankerite at the expense of original hornblende and feldspar, resulting in a brown-colored biotite- and ankerite-rich rock. The slates are relatively unaffected by the vein-forming processes. Because of their small size, relatively low grade, and discontinuity, no attempt has been made to mine any individual vein. The prevailing practice has been to mine large blocks of ground by a system of modified block-caving, followed by hand sorting to remove the barren country rock from the gold-bearing quartz prior to milling.

Rapid fabrication of three-dimensional structures for dielectrophoretic sorting of lipid-containing organisms

NASA Astrophysics Data System (ADS)

Schor, Alisha R.; Buie, Cullen R.

2016-10-01

In this work, we demonstrate a microfluidic particle sorter consisting of three-dimensional, conducting microposts. Our sorter uses dielectrophoresis (DEP) to sort high- and low-lipid phenotypes of the yeast Yarrowia lipolytica. Y. lipolytica is one of the many microorganisms being explored as a hydrocarbon source for biodiesel, Omega-3 additives, and other products derived from fatty acids. A rapid, non-destructive, lipid-based sorting tool would accelerate the commercialization of these products. Our device consists of an array of 105, 25 μm wide gold microposts that span the height of a 15 μm channel. This array generates an electric field in a microfluidic device that is uniform through the channel height, but has a custom-shaped non-uniformity in the horizontal directions. This is crucial in order to achieve continuous sorting using DEP, as it ensures all cells are exposed to the same conditions throughout the channel height. By using very low currents (100 μA), we are able to electroplate these post arrays in fewer than 15 min. This is an order of magnitude improvement over previous reports of electroplated microstructures. With an applied signal of 250 MHz, 2.6 V pp in our device, we separate a heterogeneous population with a purity of 97.8% in the low-lipid stream and 71.4% in the high-lipid stream. The high-lipid stream purity can be improved by adjusting the spacing of the array. This unique protocol for the rapid fabrication of 3D microstructures has enabled the creation of a non-invasive sorting tool for genetically engineered, lipid-producing organisms. The ability to screen organisms based on lipid content will alleviate one of the major bottlenecks in commercialization of microbial biofuels.

Role of adaptor proteins and clathrin in the trafficking of human kidney anion exchanger 1 (kAE1) to the cell surface.

PubMed

Junking, Mutita; Sawasdee, Nunghathai; Duangtum, Natapol; Cheunsuchon, Boonyarit; Limjindaporn, Thawornchai; Yenchitsomanus, Pa-thai

2014-07-01

Kidney anion exchanger 1 (kAE1) plays an important role in acid-base homeostasis by mediating chloride/bicarbornate (Cl-/HCO3-) exchange at the basolateral membrane of α-intercalated cells in the distal nephron. Impaired intracellular trafficking of kAE1 caused by mutations of SLC4A1 encoding kAE1 results in kidney disease - distal renal tubular acidosis (dRTA). However, it is not known how the intracellular sorting and trafficking of kAE1 from trans-Golgi network (TGN) to the basolateral membrane occurs. Here, we studied the role of basolateral-related sorting proteins, including the mu1 subunit of adaptor protein (AP) complexes, clathrin and protein kinase D, on kAE1 trafficking in polarized and non-polarized kidney cells. By using RNA interference, co-immunoprecipitation, yellow fluorescent protein-based protein fragment complementation assays and immunofluorescence staining, we demonstrated that AP-1 mu1A, AP-3 mu1, AP-4 mu1 and clathrin (but not AP-1 mu1B, PKD1 or PKD2) play crucial roles in intracellular sorting and trafficking of kAE1. We also demonstrated colocalization of kAE1 and basolateral-related sorting proteins in human kidney tissues by double immunofluorescence staining. These findings indicate that AP-1 mu1A, AP-3 mu1, AP-4 mu1 and clathrin are required for kAE1 sorting and trafficking from TGN to the basolateral membrane of acid-secreting α-intercalated cells. © 2014 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kattke, Michele D.; Chan, Albert H.; Duong, Andrew

Here, many species of Gram-positive bacteria use sortase transpeptidases to covalently affix proteins to their cell wall or to assemble pili. Sortase-displayed proteins perform critical and diverse functions for cell survival, including cell adhesion, nutrient acquisition, and morphological development, among others. Based on their amino acid sequences, there are at least six types of sortases (class A to F enzymes); however, class E enzymes have not been extensively studied. Class E sortases are used by soil and freshwater-dwelling Actinobacteria to display proteins that contain a non-canonical LAXTG sorting signal, which differs from 90% of known sorting signals by substitution ofmore » alanine for proline. Here we report the first crystal structure of a class E sortase, the 1.93 Å resolution structure of the SrtE1 enzyme from Streptomyces coelicolor. The active site is bound to a tripeptide, providing insight into the mechanism of substrate binding. SrtE1 possesses β3/β4 and β6/β7 active site loops that contact the LAXTG substrate and are structurally distinct from other classes. We propose that SrtE1 and other class E sortases employ a conserved tyrosine residue within their β3/β4 loop to recognize the amide nitrogen of alanine at position P3 of the sorting signal through a hydrogen bond, as seen here. Incapability of hydrogen-bonding with canonical proline-containing sorting signals likely contributes to class E substrate specificity. Furthermore, we demonstrate that surface anchoring of proteins involved in aerial hyphae formation requires an N-terminal segment in SrtE1 that is presumably positioned within the cytoplasm. Combined, our results reveal unique features within class E enzymes that enable them to recognize distinct sorting signals, and could facilitate the development of substrate-based inhibitors of this important enzyme family.« less

Microfluidic EmbryoSort technology: towards in flow analysis, sorting and dispensing of individual vertebrate embryos

NASA Astrophysics Data System (ADS)

Fuad, Nurul M.; Wlodkowic, Donald

2013-12-01

The demand to reduce the numbers of laboratory animals has facilitated the emergence of surrogate models such as tests performed on zebrafish (Danio rerio) or African clawed frog's (Xenopus levis) eggs, embryos and larvae. Those two model organisms are becoming increasingly popular replacements to current adult animal testing in toxicology, ecotoxicology and also in drug discovery. Zebrafish eggs and embryos are particularly attractive for toxicological analysis due their size (diameter 1.6 mm), optical transparency, large numbers generated per fish and very straightforward husbandry. The current bottleneck in using zebrafish embryos for screening purposes is, however, a tedious manual evaluation to confirm the fertilization status and subsequent dispensing of single developing embryos to multitier plates to perform toxicity analysis. Manual procedures associated with sorting hundreds of embryos are very monotonous and as such prone to significant analytical errors due to operator's fatigue. In this work, we present a proofof- concept design of a continuous flow embryo sorter capable of analyzing, sorting and dispensing objects ranging in size from 1.5 - 2.5 mm. The prototypes were fabricated in polymethyl methacrylate (PMMA) transparent thermoplastic using infrared laser micromachining. The application of additive manufacturing processes to prototype Lab-on-a-Chip sorters using both fused deposition manufacturing (FDM) and stereolithography (SLA) were also explored. The operation of the device was based on a revolving receptacle capable of receiving, holding and positioning single fish embryos for both interrogation and subsequent sorting. The actuation of the revolving receptacle was performed using a DC motor and/or microservo motor. The system was designed to separate between fertilized (LIVE) and non-fertilized (DEAD) eggs, based on optical transparency using infrared (IR) emitters and receivers.

Adding liquid feed to a total mixed ration reduces feed sorting behavior and improves productivity of lactating dairy cows.

PubMed

DeVries, T J; Gill, R M

2012-05-01

This study was designed to determine the effect of adding a molasses-based liquid feed (LF) supplement to a total mixed ration (TMR) on the feed sorting behavior and production of dairy cows. Twelve lactating Holstein cows (88.2±19.5 DIM) were exposed, in a crossover design with 21-d periods, to each of 2 treatment diets: 1) control TMR and 2) control TMR with 4.1% dietary dry matter LF added. Dry matter intake (DMI), sorting, and milk yield were recorded for the last 7 d of each treatment period. Milk samples were collected for composition analysis for the last 3 d of each treatment period; these data were used to calculate 4% fat-corrected milk and energy-corrected milk yield. Sorting was determined by subjecting fresh feed and orts samples to particle separation and expressing the actual intake of each particle fraction as a percentage of the predicted intake of that fraction. Addition of LF did not noticeably change the nutrient composition of the ration, with the exception of an expected increase in dietary sugar concentration (from 4.0 to 5.4%). Liquid feed supplementation affected the particle size distribution of the ration, resulting in a lesser amount of short and a greater amount of fine particles. Cows sorted against the longest ration particles on both treatment diets; the extent of this sorting was greater on the control diet (55.0 vs. 68.8%). Dry matter intake was 1.4 kg/d higher when cows were fed the LF diet as compared with the control diet, resulting in higher acid-detergent fiber, neutral-detergent fiber, and sugar intakes. As a result of the increased DMI, cows tended to produce 1.9 kg/d more milk and produced 3.1 and 3.2 kg/d more 4% fat-corrected milk and energy-corrected milk, respectively, on the LF diet. As a result, cows tended to produce more milk fat (0.13 kg/d) and produced more milk protein (0.09 kg/d) on the LF diet. No difference between treatments was observed in the efficiency of milk production. Overall, adding a molasses-based LF to TMR can be used to decrease feed sorting, enhance DMI, and improve milk yield. Copyright © 2012 American Dairy Science Association. Published by Elsevier Inc. All rights reserved.

The effect of Sinabung volcanic ash and rock phosphate nanoparticle on CEC (cation exchange capacity) base saturation exchange (K, Na, Ca, Mg) and base saturation at Andisol soils Ciater, West Java

NASA Astrophysics Data System (ADS)

Yuniarti, Anni; Arifin, Mahfud; Sofyan, Emma Trinurasi; Natalie, Betty; Sudirja, Rija; Dahliani, Dewi

2018-02-01

Andisol, soil orders which covers an upland area dominantly. The aim of this research is to know the effect between the ameliorant of Sinabung volcanic ashes with the ameliorant of rock phosphatenanoparticle towards CEC and base saturation exchange (K, Na, Ca, Mg) and the base saturation on Ciater's Andisols, West Java. A randomized complete block design (RCBD) factorial with two factors was used in this research. The first factor is the volcanic ash and the second factor is rock phosphate which consists of four levels each amount of 0%, 2.5%, 5%, 7.5% with three replications. The result showed that there was no interaction between volcanic ash and rock phosphate nanoparticle formed in first month and fourth month towards the improvement of CEC and saturation base exchange rate unless magnesium cation exchange increased in fourth month. There was independent effect of volcanic ash formed nanoparticles towards base saturation exchange increased for 5% dose. There was independent effect of rock phosphate formed nanoparticles towards base saturation exchange and increased for 5% dose. The dose combination of volcanic ashes 7.5% with phosphate rock, 5% increased the base saturation in the first month incubation.

TH-EF-BRA-06: A Novel Retrospective 3D K-Space Sorting 4D-MRI Technique Using a Radial K-Space Acquisition MRI Sequence

DOE Office of Scientific and Technical Information (OSTI.GOV)

Liu, Y; Subashi, E; Yin, F

Purpose: Current retrospective 4D-MRI provides superior tumor-to-tissue contrast and accurate respiratory motion information for radiotherapy motion management. The developed 4D-MRI techniques based on 2D-MRI image sorting require a high frame-rate of the MR sequences. However, several MRI sequences provide excellent image quality but have low frame-rate. This study aims at developing a novel retrospective 3D k-space sorting 4D-MRI technique using radial k-space acquisition MRI sequences to improve 4D-MRI image quality and temporal-resolution for imaging irregular organ/tumor respiratory motion. Methods: The method is based on a RF-spoiled, steady-state, gradient-recalled sequence with minimal echo time. A 3D radial k-space data acquisition trajectorymore » was used for sampling the datasets. Each radial spoke readout data line starts from the 3D center of Field-of-View. Respiratory signal can be extracted from the k-space center data point of each spoke. The spoke data was sorted based on its self-synchronized respiratory signal using phase sorting. Subsequently, 3D reconstruction was conducted to generate the time-resolved 4D-MRI images. As a feasibility study, this technique was implemented on a digital human phantom XCAT. The respiratory motion was controlled by an irregular motion profile. To validate using k-space center data as a respiratory surrogate, we compared it with the XCAT input controlling breathing profile. Tumor motion trajectories measured on reconstructed 4D-MRI were compared to the average input trajectory. The mean absolute amplitude difference (D) was calculated. Results: The signal extracted from k-space center data matches well with the input controlling respiratory profile of XCAT. The relative amplitude error was 8.6% and the relative phase error was 3.5%. XCAT 4D-MRI demonstrated a clear motion pattern with little serrated artifacts. D of tumor trajectories was 0.21mm, 0.23mm and 0.23mm in SI, AP and ML directions, respectively. Conclusion: A novel retrospective 3D k-space sorting 4D-MRI technique has been developed and evaluated on human digital phantom. NIH (1R21CA165384-01A1)« less

Study on Impact Acoustic—Visual Sensor-Based Sorting of ELV Plastic Materials

PubMed Central

Huang, Jiu; Tian, Chuyuan; Ren, Jingwei; Bian, Zhengfu

2017-01-01

This paper concentrates on a study of a novel multi-sensor aided method by using acoustic and visual sensors for detection, recognition and separation of End-of Life vehicles’ (ELVs) plastic materials, in order to optimize the recycling rate of automotive shredder residues (ASRs). Sensor-based sorting technologies have been utilized for material recycling for the last two decades. One of the problems still remaining results from black and dark dyed plastics which are very difficult to recognize using visual sensors. In this paper a new multi-sensor technology for black plastic recognition and sorting by using impact resonant acoustic emissions (AEs) and laser triangulation scanning was introduced. A pilot sorting system which consists of a 3-dimensional visual sensor and an acoustic sensor was also established; two kinds commonly used vehicle plastics, polypropylene (PP) and acrylonitrile-butadiene-styrene (ABS) and two kinds of modified vehicle plastics, polypropylene/ethylene-propylene-diene-monomer (PP-EPDM) and acrylonitrile-butadiene-styrene/polycarbonate (ABS-PC) were tested. In this study the geometrical features of tested plastic scraps were measured by the visual sensor, and their corresponding impact acoustic emission (AE) signals were acquired by the acoustic sensor. The signal processing and feature extraction of visual data as well as acoustic signals were realized by virtual instruments. Impact acoustic features were recognized by using FFT based power spectral density analysis. The results shows that the characteristics of the tested PP and ABS plastics were totally different, but similar to their respective modified materials. The probability of scrap material recognition rate, i.e., the theoretical sorting efficiency between PP and PP-EPDM, could reach about 50%, and between ABS and ABS-PC it could reach about 75% with diameters ranging from 14 mm to 23 mm, and with exclusion of abnormal impacts, the actual separation rates were 39.2% for PP, 41.4% for PP/EPDM scraps as well as 62.4% for ABS, and 70.8% for ABS/PC scraps. Within the diameter range of 8-13 mm, only 25% of PP and 27% of PP/EPDM scraps, as well as 43% of ABS, and 47% of ABS/PC scraps were finally separated. This research proposes a new approach for sensor-aided automatic recognition and sorting of black plastic materials, it is an effective method for ASR reduction and recycling. PMID:28594341

Check-All-That-Apply (CATA), Sorting, and Polarized Sensory Positioning (PSP) with Astringent Stimuli

PubMed Central

Fleming, Erin E.; Ziegler, Gregory R.; Hayes, John E.

2015-01-01

Multiple rapid sensory profiling techniques have been developed as more efficient alternatives to traditional sensory descriptive analysis. Here, we compare the results of three rapid sensory profiling techniques – check-all-that-apply (CATA), sorting, and polarized sensory positioning (PSP) – using a diverse range of astringent stimuli. These rapid methods differ in their theoretical basis, implementation, and data analyses, and the relative advantages and limitations are largely unexplored. Additionally, we were interested in using these methods to compare varied astringent stimuli, as these compounds are difficult to characterize using traditional descriptive analysis due to high fatigue and potential carry-over. In the CATA experiment, subjects (n=41) were asked to rate the overall intensity of each stimulus as well as to endorse any relevant terms (from a list of 13) which characterized the sample. In the sorting experiment, subjects (n=30) assigned intensity-matched stimuli into groups 1-on-1 with the experimenter. In the PSP experiment, (n=41) subjects first sampled and took notes on three blind references (‘poles’) before rating each stimulus for its similarity to each of the 3 poles. Two-dimensional perceptual maps from correspondence analysis (CATA), multidimensional scaling (sorting), and multiple factor analysis (PSP) were remarkably similar, with normalized RV coefficients indicating significantly similar plots, regardless of method. Agglomerative hierarchical clustering of all data sets using Ward’s minimum variance as the linkage criteria showed the clusters of astringent stimuli were approximately based on the respective class of astringent agent. Based on the descriptive CATA data, it appears these differences may be due to the presence of side tastes such as bitterness and sourness, rather than astringent sub-qualities per se. Although all three methods are considered ‘rapid,’ our prior experience with sorting suggests it is best performed 1:1 with the experimenter, which makes sorting relatively less efficient than CATA or PSP. Based on the evaluation criteria used here, the choice of method depends on the time constraints of the experimenter and the need for descriptive terms to understand the sensory space of the samples. Accordingly, we recommend a mixed approach that combines CATA with a subsequent PSP task so that the product space can be well characterized before choosing poles for PSP. PMID:26113771

Study on Impact Acoustic-Visual Sensor-Based Sorting of ELV Plastic Materials.

PubMed

Huang, Jiu; Tian, Chuyuan; Ren, Jingwei; Bian, Zhengfu

2017-06-08

This paper concentrates on a study of a novel multi-sensor aided method by using acoustic and visual sensors for detection, recognition and separation of End-of Life vehicles' (ELVs) plastic materials, in order to optimize the recycling rate of automotive shredder residues (ASRs). Sensor-based sorting technologies have been utilized for material recycling for the last two decades. One of the problems still remaining results from black and dark dyed plastics which are very difficult to recognize using visual sensors. In this paper a new multi-sensor technology for black plastic recognition and sorting by using impact resonant acoustic emissions (AEs) and laser triangulation scanning was introduced. A pilot sorting system which consists of a 3-dimensional visual sensor and an acoustic sensor was also established; two kinds commonly used vehicle plastics, polypropylene (PP) and acrylonitrile-butadiene-styrene (ABS) and two kinds of modified vehicle plastics, polypropylene/ethylene-propylene-diene-monomer (PP-EPDM) and acrylonitrile-butadiene-styrene/polycarbonate (ABS-PC) were tested. In this study the geometrical features of tested plastic scraps were measured by the visual sensor, and their corresponding impact acoustic emission (AE) signals were acquired by the acoustic sensor. The signal processing and feature extraction of visual data as well as acoustic signals were realized by virtual instruments. Impact acoustic features were recognized by using FFT based power spectral density analysis. The results shows that the characteristics of the tested PP and ABS plastics were totally different, but similar to their respective modified materials. The probability of scrap material recognition rate, i.e., the theoretical sorting efficiency between PP and PP-EPDM, could reach about 50%, and between ABS and ABS-PC it could reach about 75% with diameters ranging from 14 mm to 23 mm, and with exclusion of abnormal impacts, the actual separation rates were 39.2% for PP, 41.4% for PP/EPDM scraps as well as 62.4% for ABS, and 70.8% for ABS/PC scraps. Within the diameter range of 8-13 mm, only 25% of PP and 27% of PP/EPDM scraps, as well as 43% of ABS, and 47% of ABS/PC scraps were finally separated. This research proposes a new approach for sensor-aided automatic recognition and sorting of black plastic materials, it is an effective method for ASR reduction and recycling.

Safe sorting of GFP-transduced live cells for subsequent culture using a modified FACS vantage.

PubMed

Sørensen, T U; Gram, G J; Nielsen, S D; Hansen, J E

1999-12-01

A stream-in-air cell sorter enables rapid sorting to a high purity, but it is not well suited for sorting of infectious material due to the risk of airborne spread to the surroundings. A FACS Vantage cell sorter was modified for safe use with potentially HIV infected cells. Safety tests with bacteriophages were performed to evaluate the potential spread of biologically active material during cell sorting. Cells transduced with a retroviral vector carrying the gene for GFP were sorted on the basis of their GFP fluorescence, and GFP expression was followed during subsequent culture. The bacteriophage sorting showed that the biologically active material was confined to the sorting chamber. A failure mode simulating a nozzle blockage resulted in detectable droplets inside the sorting chamber, but no droplets could be detected when an additional air suction from the sorting chamber had been put on. The GFP transduced cells were sorted to 99% purity. Cells not expressing GFP at the time of sorting did not turn on the gene during subsequent culture. Un-sorted cells and cells sorted to be positive for GFP showed a decrease in the fraction of GFP positive cells during culture. Sorting of live infected cells can be performed safely and with no deleterious effects on vector expression using the modified FACS Vantage instrument. Copyright 1999 Wiley-Liss, Inc.

A FRET Biosensor for ROCK Based on a Consensus Substrate Sequence Identified by KISS Technology.

PubMed

Li, Chunjie; Imanishi, Ayako; Komatsu, Naoki; Terai, Kenta; Amano, Mutsuki; Kaibuchi, Kozo; Matsuda, Michiyuki

2017-01-11

Genetically-encoded biosensors based on Förster/fluorescence resonance energy transfer (FRET) are versatile tools for studying the spatio-temporal regulation of signaling molecules within not only the cells but also tissues. Perhaps the hardest task in the development of a FRET biosensor for protein kinases is to identify the kinase-specific substrate peptide to be used in the FRET biosensor. To solve this problem, we took advantage of kinase-interacting substrate screening (KISS) technology, which deduces a consensus substrate sequence for the protein kinase of interest. Here, we show that a consensus substrate sequence for ROCK identified by KISS yielded a FRET biosensor for ROCK, named Eevee-ROCK, with high sensitivity and specificity. By treating HeLa cells with inhibitors or siRNAs against ROCK, we show that a substantial part of the basal FRET signal of Eevee-ROCK was derived from the activities of ROCK1 and ROCK2. Eevee-ROCK readily detected ROCK activation by epidermal growth factor, lysophosphatidic acid, and serum. When cells stably-expressing Eevee-ROCK were time-lapse imaged for three days, ROCK activity was found to increase after the completion of cytokinesis, concomitant with the spreading of cells. Eevee-ROCK also revealed a gradual increase in ROCK activity during apoptosis. Thus, Eevee-ROCK, which was developed from a substrate sequence predicted by the KISS technology, will pave the way to a better understanding of the function of ROCK in a physiological context.

Lithofacies of Spencer Formation, western Tualatin Valley, Oregon

DOE Office of Scientific and Technical Information (OSTI.GOV)

Van Atta, R.O.

The Spencer Formation crops out in a narrow band that trends north-northwest on the western edge of the Willamette and Tualatin Valleys, Oregon. It apparently conformably overlies mud rocks of either the Yamhill or the Nestucca Formation and is conformably overlain by the Pittsburgh Bluff Formation. The Spencer Formation consists of two members (informal): a lower highly micaceous sandstone (800-1000 ft) and an upper member that is micaceous siltstone and mudstone (1000-1300 ft). The lower member includes an upper part that is light-gray to creamy-gray, silty to muddy, pebbly lithic arkose to feldspathic litharenite, with minor arkose. Sorting is poormore » and beds may be laminated to ripple cross-laminated or massive and bioturbated with abundant mollusk shells, carbonized wood, and burrows. The lower part of the lower member is medium-gray to greenish-gray, silty, pumiceous lithic arkose to feldspathic litharenite. The texture tends to be more uniform and better sorted than that of the upper part of the member. Bedding is commonly massive due to bioturbation. The upper member is medium to dark-gray mudstone with thin pebble-conglomerate lenses. It intertongues with the lower member. Bioturbation, burrows, and carbonized wood are common. The trend in depositional environments appears to be from outer to mid-neritic (lower part, lower member) to shallow neritic, nearshore, and lagoonal (upper part, lower member, and upper member). The provenance of the Spencer Formation includes both proximal volcanics and distant plutonic and high-grade metamorphics.« less

Investigation of Rock Mass Stability Around the Tunnels in an Underground Mine in USA Using Three-Dimensional Numerical Modeling

NASA Astrophysics Data System (ADS)

Xing, Yan; Kulatilake, P. H. S. W.; Sandbak, L. A.

2018-02-01

The stability of the rock mass around the tunnels in an underground mine was investigated using the distinct element method. A three-dimensional model was developed based on the available geological, geotechnical, and mine construction information. It incorporates a complex lithological system, persistent and non-persistent faults, and a complex tunnel system including backfilled tunnels. The strain-softening constitutive model was applied for the rock masses. The rock mass properties were estimated using the Hoek-Brown equations based on the intact rock properties and the RMR values. The fault material behavior was modeled using the continuously yielding joint model. Sequential construction and rock supporting procedures were simulated based on the way they progressed in the mine. Stress analyses were performed to study the effect of the horizontal in situ stresses and the variability of rock mass properties on tunnel stability, and to evaluate the effectiveness of rock supports. The rock mass behavior was assessed using the stresses, failure zones, deformations around the tunnels, and the fault shear displacement vectors. The safety of rock supports was quantified using the bond shear and bolt tensile failures. Results show that the major fault and weak interlayer have distinct influences on the displacements and stresses around the tunnels. Comparison between the numerical modeling results and the field measurements indicated the cases with the average rock mass properties, and the K 0 values between 0.5 and 1.25 provide satisfactory agreement with the field measurements.

Integrating GIS-based geologic mapping, LiDAR-based lineament analysis and site specific rock slope data to delineate a zone of existing and potential rock slope instability located along the grandfather mountain window-Linville Falls shear zone contact, Southern Appalachian Mountains, Watauga County, North Carolina

USGS Publications Warehouse

Gillon, K.A.; Wooten, R.M.; Latham, R.L.; Witt, A.W.; Douglas, T.J.; Bauer, J.B.; Fuemmeler, S.J.

2009-01-01

Landslide hazard maps of Watauga County identify >2200 landslides, model debris flow susceptibility, and evaluate a 14km x 0.5km zone of existing and potential rock slope instability (ZEPRSI) near the Town of Boone. The ZEPRSI encompasses west-northwest trending (WNWT) topographic ridges where 14 active/past-active rock/weathered rock slides occur mainly in rocks of the Grandfather Mountain Window (GMW). The north side of this ridgeline is the GMW / Linville Falls Fault (LFF) contact. Sheared rocks of the Linville Falls Shear Zone (LFSZ) occur along the ridge and locally in the valley north of the contact. The valley is underlain principally by layered granitic gneiss comprising the Linville Falls/Beech Mountain/Stone Mountain Thrust Sheet. The integration of ArcGIS??? - format digital geologic and lineament mapping on a 6m LiDAR (Light Detecting and Ranging) digital elevation model (DEM) base, and kinematic analyses of site specific rock slope data (e.g., presence and degree of ductile and brittle deformation fabrics, rock type, rock weathering state) indicate: WNWT lineaments are expressions of a regionally extensive zone of fractures and faults; and ZEPRSI rock slope failures concentrate along excavated, north-facing LFF/LFSZ slopes where brittle fabrics overprint older metamorphic foliations, and other fractures create side and back release surfaces. Copyright 2009 ARMA, American Rock Mechanics Association.

Design and realization of sort manipulator of crystal-angle sort machine

NASA Astrophysics Data System (ADS)

Wang, Ming-shun; Chen, Shu-ping; Guan, Shou-ping; Zhang, Yao-wei

2005-12-01

It is a current tendency of development in automation technology to replace manpower with manipulators in working places where dangerous, harmful, heavy or repetitive work is involved. The sort manipulator is installed in a crystal-angle sort machine to take the place of manpower, and engaged in unloading and sorting work. It is the outcome of combing together mechanism, electric transmission, and pneumatic element and micro-controller control. The step motor makes the sort manipulator operate precisely. The pneumatic elements make the sort manipulator be cleverer. Micro-controller's software bestows some simple artificial intelligence on the sort manipulator, so that it can precisely repeat its unloading and sorting work. The combination of manipulator's zero position and step motor counting control puts an end to accumulating error in long time operation. A sort manipulator's design in the practice engineering has been proved to be correct and reliable.

Rock.XML - Towards a library of rock physics models

NASA Astrophysics Data System (ADS)

Jensen, Erling Hugo; Hauge, Ragnar; Ulvmoen, Marit; Johansen, Tor Arne; Drottning, Åsmund

2016-08-01

Rock physics modelling provides tools for correlating physical properties of rocks and their constituents to the geophysical observations we measure on a larger scale. Many different theoretical and empirical models exist, to cover the range of different types of rocks. However, upon reviewing these, we see that they are all built around a few main concepts. Based on this observation, we propose a format for digitally storing the specifications for rock physics models which we have named Rock.XML. It does not only contain data about the various constituents, but also the theories and how they are used to combine these building blocks to make a representative model for a particular rock. The format is based on the Extensible Markup Language XML, making it flexible enough to handle complex models as well as scalable towards extending it with new theories and models. This technology has great advantages as far as documenting and exchanging models in an unambiguous way between people and between software. Rock.XML can become a platform for creating a library of rock physics models; making them more accessible to everyone.

Complexity Optimization and High-Throughput Low-Latency Hardware Implementation of a Multi-Electrode Spike-Sorting Algorithm

PubMed Central

Dragas, Jelena; Jäckel, David; Hierlemann, Andreas; Franke, Felix

2017-01-01

Reliable real-time low-latency spike sorting with large data throughput is essential for studies of neural network dynamics and for brain-machine interfaces (BMIs), in which the stimulation of neural networks is based on the networks' most recent activity. However, the majority of existing multi-electrode spike-sorting algorithms are unsuited for processing high quantities of simultaneously recorded data. Recording from large neuronal networks using large high-density electrode sets (thousands of electrodes) imposes high demands on the data-processing hardware regarding computational complexity and data transmission bandwidth; this, in turn, entails demanding requirements in terms of chip area, memory resources and processing latency. This paper presents computational complexity optimization techniques, which facilitate the use of spike-sorting algorithms in large multi-electrode-based recording systems. The techniques are then applied to a previously published algorithm, on its own, unsuited for large electrode set recordings. Further, a real-time low-latency high-performance VLSI hardware architecture of the modified algorithm is presented, featuring a folded structure capable of processing the activity of hundreds of neurons simultaneously. The hardware is reconfigurable “on-the-fly” and adaptable to the nonstationarities of neuronal recordings. By transmitting exclusively spike time stamps and/or spike waveforms, its real-time processing offers the possibility of data bandwidth and data storage reduction. PMID:25415989

Complexity optimization and high-throughput low-latency hardware implementation of a multi-electrode spike-sorting algorithm.

PubMed

Dragas, Jelena; Jackel, David; Hierlemann, Andreas; Franke, Felix

2015-03-01

Reliable real-time low-latency spike sorting with large data throughput is essential for studies of neural network dynamics and for brain-machine interfaces (BMIs), in which the stimulation of neural networks is based on the networks' most recent activity. However, the majority of existing multi-electrode spike-sorting algorithms are unsuited for processing high quantities of simultaneously recorded data. Recording from large neuronal networks using large high-density electrode sets (thousands of electrodes) imposes high demands on the data-processing hardware regarding computational complexity and data transmission bandwidth; this, in turn, entails demanding requirements in terms of chip area, memory resources and processing latency. This paper presents computational complexity optimization techniques, which facilitate the use of spike-sorting algorithms in large multi-electrode-based recording systems. The techniques are then applied to a previously published algorithm, on its own, unsuited for large electrode set recordings. Further, a real-time low-latency high-performance VLSI hardware architecture of the modified algorithm is presented, featuring a folded structure capable of processing the activity of hundreds of neurons simultaneously. The hardware is reconfigurable “on-the-fly” and adaptable to the nonstationarities of neuronal recordings. By transmitting exclusively spike time stamps and/or spike waveforms, its real-time processing offers the possibility of data bandwidth and data storage reduction.

A new design concept of fully grouted rock bolts in underground construction

NASA Astrophysics Data System (ADS)

Phich Nguyen, Quang; Nguyen, Van Manh; Tuong Nguyen, Ke

2018-04-01

The main problem after excavating an underground excavation is to maintain the stability of the excavation for a certain period of time. Failure in meeting this demand is a threat to safety of men and equipment. Support and reinforcement are different instruments with different mechanisms. Among the common support systems in tunnelling and mining, rock bolts have been widely used to reinforce rock mass and also to reduce geological hazards. Furthermore rock bolts can be applied under varying different geological conditions with cost-effectiveness. Although different methods are developed for grouted rock bolts design until now, the interaction mechanism of the rock bolts and rock mass is still very complicated issue. The paper addresses an analytical model for the analysis and design of fully grouted rock bolts based on the reinforcement principle. According to this concept the jointed rock mass reinforced by grouted rock bolts is considered as composite material which includes rock mass, the grout material and the bolt shank. The mechanical properties of this composite material depend on the ratio of the components. The closed-form solution was developed based on the assumption that the rock mass arround a circular tunnel remained elastic after installing fully grouted rock bolts. The main parameters of the rock-bolt system (the diameter and length of bolt shank, the space between the bolts) are then easily estimated from the obtained solution.

CryoEM and image sorting for flexible protein/DNA complexes.

PubMed

Villarreal, Seth A; Stewart, Phoebe L

2014-07-01

Intrinsically disordered regions of proteins and conformational flexibility within complexes can be critical for biological function. However, disorder, flexibility, and heterogeneity often hinder structural analyses. CryoEM and single particle image processing techniques offer the possibility of imaging samples with significant flexibility. Division of particle images into more homogenous subsets after data acquisition can help compensate for heterogeneity within the sample. We present the utility of an eigenimage sorting analysis for examining two protein/DNA complexes with significant conformational flexibility and heterogeneity. These complexes are integral to the non-homologous end joining pathway, and are involved in the repair of double strand breaks of DNA. Both complexes include the DNA-dependent protein kinase catalytic subunit (DNA-PKcs) and biotinylated DNA with bound streptavidin, with one complex containing the Ku heterodimer. Initial 3D reconstructions of the two DNA-PKcs complexes resembled a cryoEM structure of uncomplexed DNA-PKcs without additional density clearly attributable to the remaining components. Application of eigenimage sorting allowed division of the DNA-PKcs complex datasets into more homogeneous subsets. This led to visualization of density near the base of the DNA-PKcs that can be attributed to DNA, streptavidin, and Ku. However, comparison of projections of the subset structures with 2D class averages indicated that a significant level of heterogeneity remained within each subset. In summary, image sorting methods allowed visualization of extra density near the base of DNA-PKcs, suggesting that DNA binds in the vicinity of the base of the molecule and potentially to a flexible region of DNA-PKcs. Copyright © 2013 Elsevier Inc. All rights reserved.

A Task Analysis of the Shift from Teacher Instructions to Self-Instructions in Performing an In-Common Task.

ERIC Educational Resources Information Center

Grote, Irene; And Others

1996-01-01

Three preschoolers performed four sorts with stimulus cards--an untaught target sort and three directly taught alternating sorts considered to self-instruct the target performance. Accuracy increased first in the skill sorts and then in the untaught target sorts. All subjects generalized to new target sorts. Correct spontaneous self-instructions…

Improved microstructure of cement-based composites through the addition of rock wool particles

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lin, Wei-Ting; Institute of Nuclear Energy Research, Atomic Energy Council, Taoyuan 32546, Taiwan; Cheng, An, E-mail: ancheng@niu.edu.tw

2013-10-15

Rock wool is an inorganic fibrous substance produced by steam blasting and cooling molten glass. As with other industrial by-products, rock wool particles can be used as cementitious materials or ultra fine fillers in cement-based composites. This study investigated the microstructure of mortar specimens produced with cement-based composites that include various forms of rock wool particles. It conducted compressive strength testing, rapid chloride penetration tests, X-ray diffraction analysis, thermo-gravimetric analysis, and scanning electronic microscopy to evaluate the macro- and micro-properties of the cement-based composites. Test results indicate that inclusion of rock wool particles in composites improved compressive strength and reducedmore » chloride ion penetration at the age of 91 days due to the reduction of calcium hydroxide content. Microscopic analysis confirms that the use of rock wool particles contributed to the formation of a denser, more compact microstructure within the hardened paste. In addition, X-ray diffraction analysis shows few changes in formation of pozzolanic reaction products and no new hydrations are formed with incorporating rock wool particles. - Highlights: • We report the microstructural characterization of cement-based composites. • Different mixes produced with various rock wool particles have been tested. • The influence of different mixes on macro and micro properties has been discussed. • The macro properties are included compressive strength and permeability. • XRD and SEM observations confirm the pozzolanic reaction in the resulting pastes.« less

Mechanisms of Polarized Organelle Distribution in Neurons

PubMed Central

Britt, Dylan J.; Farías, Ginny G.; Guardia, Carlos M.; Bonifacino, Juan S.

2016-01-01

Neurons are highly polarized cells exhibiting axonal and somatodendritic domains with distinct complements of cytoplasmic organelles. Although some organelles are widely distributed throughout the neuronal cytoplasm, others are segregated to either the axonal or somatodendritic domains. Recent findings show that organelle segregation is largely established at a pre-axonal exclusion zone (PAEZ) within the axon hillock. Polarized sorting of cytoplasmic organelles at the PAEZ is proposed to depend mainly on their selective association with different microtubule motors and, in turn, with distinct microtubule arrays. Somatodendritic organelles that escape sorting at the PAEZ can be subsequently retrieved at the axon initial segment (AIS) by a microtubule- and/or actin-based mechanism. Dynamic sorting along the PAEZ-AIS continuum can thus explain the polarized distribution of cytoplasmic organelles between the axonal and somatodendritic domains. PMID:27065809

A mower detector to judge soil sorting

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bramlitt, E.T.; Johnson, N.R.

1995-12-31

Thermo Nuclear Services (TNS) has developed a mower detector as an inexpensive and fast means for deciding potential value of soil sorting for cleanup. It is a shielded detector box on wheels pushed over the ground (as a person mows grass) at 30 ft/min with gamma-ray counts recorded every 0.25 sec. It mirror images detection by the TNS transportable sorter system which conveys soil at 30 ft/min and toggles a gate to send soil on separate paths based on counts. The mower detector shows if contamination is variable and suitable for sorting, and by unique calibration sources, it indicates detectionmore » sensitivity. The mower detector has been used to characterize some soil at Department of Energy sites in New Jersey and South Carolina.« less

Power feasibility of implantable digital spike-sorting circuits for neural prosthetic systems.

PubMed

Zumsteg, Zachary S; Ahmed, Rizwan E; Santhanam, Gopal; Shenoy, Krishna V; Meng, Teresa H

2004-01-01

A new class of neural prosthetic systems aims to assist disabled patients by translating cortical neural activity into control signals for prosthetic devices. Based on the success of proof-of-concept systems in the laboratory, there is now considerable interest in increasing system performance and creating implantable electronics for use in clinical systems. A critical question that impacts system performance and the overall architecture of these systems is whether it is possible to identify the neural source of each action potential (spike sorting) in real-time and with low power. Low power is essential both for power supply considerations and heat dissipation in the brain. In this paper we report that several state-of-the-art spike sorting algorithms implemented in modern CMOS VLSI processes are expected to be power realistic.

Continuous high throughput molecular adhesion based cell sorting using ridged microchannels

NASA Astrophysics Data System (ADS)

Tasadduq, Bushra; Wang, Gonghao; Alexeev, Alexander; Sarioglu, Ali Fatih; Sulchek, Todd

2016-11-01

Cell molecular interactions govern important physiological processes such as stem cell homing, inflammation and cancer metastasis. But due to a lack of effective separation technologies selective to these interactions it is challenging to specifically sort cells. Other label free separation techniques based on size, stiffness and shape do not provide enough specificity to cell type, and correlation to clinical condition. We propose a novel microfluidic device capable of high throughput molecule dependent separation of cells by flowing them through a microchannel decorated with molecule specific coated ridges. The unique aspect of this sorting design is the use of optimized gap size which is small enough to lightly squeeze the cells while flowing under the ridged part of the channel to increase the surface area for interaction between the ligand on cell surface and coated receptor molecule but large enough so that biomechanical markers, stiffness and viscoelasticity, do not dominate the cell separation mechanism. We are able to separate Jurkat cells based on its expression of PSGL-1ligand using ridged channel coated with P selectin at a flow rate of 0.045ml/min and achieve 2-fold and 5-fold enrichment of PSGL-1 positive and negative Jurkat cells respectively.

Sorting nexin-2 is associated with tubular elements of the early endosome, but is not essential for retromer-mediated endosome-to-TGN transport

PubMed Central

Carlton, Jez G.; Bujny, Miriam V.; Peter, Brian J.; Oorschot, Viola M. J.; Rutherford, Anna; Arkell, Rebecca S.; Klumperman, Judith; McMahon, Harvey T.; Cullen, Peter J.

2006-01-01

Summary Sorting nexins are a large family of phox-homology-domain-containing proteins that have been implicated in the control of endosomal sorting. Sorting nexin-1 is a component of the mammalian retromer complex that regulates retrieval of the cation-independent mannose 6-phosphate receptor from endosomes to the trans-Golgi network. In yeast, retromer is composed of Vps5p (the orthologue of sorting nexin-1), Vps17p (a related sorting nexin) and a cargo selective subcomplex composed of Vps26p, Vps29p and Vps35p. With the exception of Vps17p, mammalian orthologues of all yeast retromer components have been identified. For Vps17p, one potential mammalian orthologue is sorting nexin-2. Here we show that, like sorting nexin-1, sorting nexin-2 binds phosphatidylinositol 3-monophosphate and phosphatidylinositol 3,5-bisphosphate, and possesses a Bin/Amphiphysin/Rvs domain that can sense membrane curvature. However, in contrast to sorting nexin-1, sorting nexin-2 could not induce membrane tubulation in vitro or in vivo. Functionally, we show that endogenous sorting nexin-1 and sorting nexin-2 co-localise on high curvature tubular elements of the 3-phosphoinositide-enriched early endosome, and that suppression of sorting nexin-2 does not perturb the degradative sorting of receptors for epidermal growth factor or transferrin, nor the steady-state distribution of the cation-independent mannose 6-phosphate receptor. However, suppression of sorting nexin-2 results in a subtle alteration in the kinetics of cation-independent mannose 6-phosphate receptor retrieval. These data suggest that although sorting nexin-2 may be a component of the retromer complex, its presence is not essential for the regulation of endosome-to-trans Golgi network retrieval of the cation-independent mannose 6-phosphate receptor. PMID:16179610

SU-D-18C-01: A Novel 4D-MRI Technology Based On K-Space Retrospective Sorting

DOE Office of Scientific and Technical Information (OSTI.GOV)

Liu, Y; Yin, F; Cai, J

2014-06-01

Purpose: Current 4D-MRI techniques lack sufficient temporal/spatial resolution and consistent tumor contrast. To overcome these limitations, this study presents the development and initial evaluation of an entirely new framework of 4D-MRI based on k-space retrospective sorting. Methods: An important challenge of the proposed technique is to determine the number of repeated scans(NR) required to obtain sufficient k-space data for 4D-MRI. To do that, simulations using 29 cancer patients' respiratory profiles were performed to derive the relationship between data acquisition completeness(Cp) and NR, also relationship between NR(Cp=95%) and the following factors: total slice(NS), respiratory phase bin length(Lb), frame rate(fr), resolution(R) andmore » image acquisition starting-phase(P0). To evaluate our technique, a computer simulation study on a 4D digital human phantom (XCAT) were conducted with regular breathing (fr=0.5Hz; R=256×256). A 2D echo planer imaging(EPI) MRI sequence were assumed to acquire raw k-space data, with respiratory signal and acquisition time for each k-space data line recorded simultaneously. K-space data was re-sorted based on respiratory phases. To evaluate 4D-MRI image quality, tumor trajectories were measured and compared with the input signal. Mean relative amplitude difference(D) and cross-correlation coefficient(CC) are calculated. Finally, phase-sharing sliding window technique was applied to investigate the feasibility of generating ultra-fast 4D-MRI. Result: Cp increased with NR(Cp=100*[1-exp(-0.19*NR)], when NS=30, Lb=100%/6). NR(Cp=95%) was inversely-proportional to Lb (r=0.97), but independent of other factors. 4D-MRI on XCAT demonstrated highly accurate motion information (D=0.67%, CC=0.996) with much less artifacts than those on image-based sorting 4D-MRI. Ultra-fast 4D-MRI with an apparent temporal resolution of 10 frames/second was reconstructed using the phase-sharing sliding window technique. Conclusions: A novel 4D-MRI technology based on k-space sorting has been successfully developed and evaluated on the digital phantom. Framework established can be applied to a variety of MR sequences, showing great promises to develop the optimal 4D-MRI technique for many radiation therapy applications. NIH (1R21CA165384-01A1)« less

Geohydrologic reconnaissance of the upper Potomac River basin

USGS Publications Warehouse

Trainer, Frank W.; Watkins, Frank A.

1975-01-01

The upper Potomac River basin, in the central Appalachian region in Pennsylvania, Maryland, Virginia, and West Virginia, is a humid temperate region of diverse fractured rocks. Three geohydrologic terranes, which underlie large parts of the basin, are described in terms of their aquifer characteristics and of the magnitude and duration of their base runoff: (1) fractured rock having a thin regolith, (2) fractured rock having a thick regolith, and (3) carbonate rock. Crystalline rock in the mountainous part of the Blue Ridge province and shale with tight sandstone in the folded Appalachians are covered with thin regolith. Water is stored in and moves through fairly unmodified fractures. Average transmissivity (T) is estimated to be 150 feet squared per day, and average storage coefficient (S), 0.005. Base runoff declines rapidly from its high levels during spring and is poorly sustained during the summer season of high evapotranspiration. The rocks in this geohydrologic terrane are the least effective in the basin for the development of water supplies and as a source of dry-weather streamflow. Crystalline and sedimentary rocks in the Piedmont province and in the lowland part of the Blue Ridge province are covered with thick regolith. Water is stored in and moves through both the regolith and the underlying fractured rock. Estimated average values for aquifer characteristics are T, 200 feet squared per day, and S, 0.01. Base runoff is better sustained in this terrane than in the thin-regolith terrane and on the average .is about twice as great. Carbonate rock, in which fractures have been widened selectively by solution, especially near streams, has estimated average aquifer characteristics of T, 500 feet squared per day, and S, 0.03-0.04. This rock is the most effective in the basin in terms of water supply and base runoff. Where its fractures have not been widened by solution, the carbonate rock is a fractured-rock aquifer much like the noncarbonate rock. At low values the frequency of specific capacities of wells is much the same in all rocks in the basin, but high values of specific capacity are as much as 10 times more frequent in carbonate rock than in noncarbonate rock. Nearly all the large springs and high-capacity wells in the basin are in carbonate rock. Base runoff from the carbonate rock is better sustained during dry weather and on the average is about three times as great as base runoff from fractured rock having a thin regolith. The potential role of these water-bearing terranes in water management probably lies in the local development of large water supplies from the carbonate rock and in the possible manipulation of underground storage for such purposes as providing space for artificial recharge of ground water and providing ground water to be used for the augmentation of low streamflow. The chief water-quality problems in the basin--acidic mine-drainage water in the western part of the basin, local highly mineralized ground water, and the high nitrate content of ground water in some of the densely populated parts of the basin--would probably have little adverse affect on the use of ground water for low-flow augmentation.

Mars Science Laboratory Sample Acquisition, Sample Processing and Handling: Subsystem Design and Test Challenges

NASA Technical Reports Server (NTRS)

Jandura, Louise

2010-01-01

The Sample Acquisition/Sample Processing and Handling subsystem for the Mars Science Laboratory is a highly-mechanized, Rover-based sampling system that acquires powdered rock and regolith samples from the Martian surface, sorts the samples into fine particles through sieving, and delivers small portions of the powder into two science instruments inside the Rover. SA/SPaH utilizes 17 actuated degrees-of-freedom to perform the functions needed to produce 5 sample pathways in support of the scientific investigation on Mars. Both hardware redundancy and functional redundancy are employed in configuring this sampling system so some functionality is retained even with the loss of a degree-of-freedom. Intentional dynamic environments are created to move sample while vibration isolators attenuate this environment at the sensitive instruments located near the dynamic sources. In addition to the typical flight hardware qualification test program, two additional types of testing are essential for this kind of sampling system: characterization of the intentionally-created dynamic environment and testing of the sample acquisition and processing hardware functions using Mars analog materials in a low pressure environment. The overall subsystem design and configuration are discussed along with some of the challenges, tradeoffs, and lessons learned in the areas of fault tolerance, intentional dynamic environments, and special testing

Integrated loessite-paleokarst depositional system, early Pennsylvanian Molas Formation, Paradox Basin, southwestern Colorado, U.S.A.

NASA Astrophysics Data System (ADS)

Evans, James E.; Reed, Jason M.

2007-03-01

Mississippian paleokarst served as a dust trap for the oldest known Paleozoic loessite in North America. The early Pennsylvanian Molas Formation consists of loessite facies (sorted, angular, coarse-grained quartz siltstone), infiltration facies (loess redeposited as cave sediments within paleokarst features of the underlying Mississippian Leadville Limestone), colluvium facies (loess infiltrated into colluvium surrounding paleokarst towers) and fluvial facies (siltstone-rich, fluvial channel and floodplain deposits with paleosols). The depositional system evolved from an initial phase of infiltration and colluvium facies that were spatially and temporally related to the paleokarst surface, to loessite facies that mantled the paleotopography, and to fluvial facies that were intercalated with marine-deltaic rocks of the overlying Pennsylvanian Hermosa Formation. This sequence is interpreted as a response to the modification of the dust-trapping ability of the paleokarst surface. Loess was initially eroded from the surface, transported and redeposited in the subsurface by the karst paleohydrologic system, maintaining the dust-trapping ability of the paleotopographic surface. Later, the paleotopographic surface was buried when loess accumulation rates exceeded the transport capacity of the karst paleohydrologic system. These changes could have occurred because of (1) increased dust input rates in western Pangaea, (2) rising base levels and/or (3) porosity loss due to deposition within paleokarst passageways.

Prediction of slope stability based on numerical modeling of stress–strain state of rocks

NASA Astrophysics Data System (ADS)

Kozhogulov Nifadyev, KCh, VI; Usmanov, SF

2018-03-01

The paper presents the developed technique for the estimation of rock mass stability based on the finite element modeling of stress–strain state of rocks. The modeling results on the pit wall landslide as a flow of particles along a sloped surface are described.

Ground-water geology of the Gonaives Plain, Haiti

USGS Publications Warehouse

Taylor, George C.; Lemoine, Rémy C.

1950-01-01

The Gonaives Plain lies in northern Haiti at the head of the Gulf of Gonaives. Ground water in the plain is used widely for domestic and stock purposes but only to limited extent for irrigation. The future agricultural development of the plain will depend in large measure on the proper utilization of available ground-water supplies for irrigation. The rocks in the region of the Gonaives Plain belong to the upper (?) Cretaceous series of the Cretaceous system, the Nocene and Oligovene series of the Tertiary system, and the Pleistocene and Recent series of the Quarternary system. The structural depression occupied by the Gonaives Plain was formed in post-Miocene time by the dislocation of Oligocene and older rocks along normal faults and by the tilting of the adjacent crustal blocks. The lower parts of the depression contain a Pleistocene and Recent alluvial fill deposited by streams tributary to the plain. The upper (?) Cretaceous rocks include aniesite and basalt lava flows locally intercalated with some beds of tuff and agglomerate. These rocks are generally dense and impervious but locally small springs rise from fractures and bedding planes or from weathered zones. The Nocene rocks are hard, thin-bedded, cherty limestones with some beds of massive chalky limestone. Considerable ground water circulates through joints, bedding planes, and solution passages in these rocks giving rise to important springs such as Sources Madame Charles. These springs discharge at the rate of about 110 liters per second. The Oligocene rocks include limestone, shely limestone, limy sandstone, marl, and shale. The limestone beds contain solution passages and other openings and these may afford capacity for the circulation of ground water. However, no wells or springs in Oligocene rocks were observed during the present study. The alluvial fill of the plain is composed of interbedded lenses of clay, silt, sand, and gravel. These deposits contain a zone of saturation whose upper limit is marked by a water table. The depth to the water table beneath the alluvial lowland of the plain ranges from less than one meter to about 20 meters. In most places in the plain the depth to water is less that 15 meters. Where present in the zone of saturation the coarse, well-sorted sand and gravel beds of the alluvium will probably yield moderate to large supplies of water to wells and infiltration galleries. The individual yields of existing wells range from a few liters to about 60 liters per second. The most favorable part of the plain for ground-water prospecting and development lies 5 to 10 kilometers northeast of Gonaives. In this area yields of 10 to 50 liters per second could be obtained from the alluvium in simple wells drilled to depths of about 35 to 45 meters. Additional information on the yield and physical character of aquifers in the alluvium would be provided by test wells drilled to depths of 40 to 60 meters.

International Society for Analytical Cytology biosafety standard for sorting of unfixed cells.

PubMed

Schmid, Ingrid; Lambert, Claude; Ambrozak, David; Marti, Gerald E; Moss, Delynn M; Perfetto, Stephen P

2007-06-01

Cell sorting of viable biological specimens has become very prevalent in laboratories involved in basic and clinical research. As these samples can contain infectious agents, precautions to protect instrument operators and the environment from hazards arising from the use of sorters are paramount. To this end the International Society of Analytical Cytology (ISAC) took a lead in establishing biosafety guidelines for sorting of unfixed cells (Schmid et al., Cytometry 1997;28:99-117). During the time period these recommendations have been available, they have become recognized worldwide as the standard practices and safety precautions for laboratories performing viable cell sorting experiments. However, the field of cytometry has progressed since 1997, and the document requires an update. Initially, suggestions about the document format and content were discussed among members of the ISAC Biosafety Committee and were incorporated into a draft version that was sent to all committee members for review. Comments were collected, carefully considered, and incorporated as appropriate into a draft document that was posted on the ISAC web site to invite comments from the flow cytometry community at large. The revised document was then submitted to ISAC Council for review. Simultaneously, further comments were sought from newly-appointed ISAC Biosafety committee members. This safety standard for performing viable cell sorting experiments was recently generated. The document contains background information on the biohazard potential of sorting and the hazard classification of infectious agents as well as recommendations on (1) sample handling, (2) operator training and personal protection, (3) laboratory design, (4) cell sorter set-up, maintenance, and decontamination, and (5) testing the instrument for the efficiency of aerosol containment. This standard constitutes an updated and expanded revision of the 1997 biosafety guideline document. It is intended to provide laboratories involved in cell sorting with safety practices that take into account the enhanced hazard potential of high-speed sorting. Most importantly, it states that droplet-based sorting of infectious or hazardous biological material requires a higher level of containment than the one recommended for the risk group classification of the pathogen. The document also provides information on safety features of novel instrumentation, new options for personal protective equipment, and recently developed methods for testing the efficiency of aerosol containment.

Rock Drilling Performance Evaluation by an Energy Dissipation Based Rock Brittleness Index

NASA Astrophysics Data System (ADS)

Munoz, H.; Taheri, A.; Chanda, E. K.

2016-08-01

To reliably estimate drilling performance both tool-rock interaction laws along with a proper rock brittleness index are required to be implemented. In this study, the performance of a single polycrystalline diamond compact (PDC) cutter cutting and different drilling methods including PDC rotary drilling, roller-cone rotary drilling and percussive drilling were investigated. To investigate drilling performance by rock strength properties, laboratory PDC cutting tests were performed on different rocks to obtain cutting parameters. In addition, results of laboratory and field drilling on different rocks found elsewhere in literature were used. Laboratory and field cutting and drilling test results were coupled with values of a new rock brittleness index proposed herein and developed based on energy dissipation withdrawn from the complete stress-strain curve in uniaxial compression. To quantify cutting and drilling performance, the intrinsic specific energy in rotary-cutting action, i.e. the energy consumed in pure cutting action, and drilling penetration rate values in percussive action were used. The results show that the new energy-based brittleness index successfully describes the performance of different cutting and drilling methods and therefore is relevant to assess drilling performance for engineering applications.

Crystallization history of Kilauea Iki lava lake as seen in drill core recovered in 1967-1979

NASA Astrophysics Data System (ADS)

Helz, R. T.

1980-12-01

Kilauea Iki lava lake formed during the 1959 summit eruption, one of the most picritic eruptions of Kilauea Volcano in the twentieth century. Since 1959 the 110 to 122 m thick lake has cooled slowly, developing steadily thickening upper and lower crusts, with a lens of more molten lava in between. Recent coring dates, with maximum depths reached in the center of the lake, are: 1967 (26.5 m). 1975 (44.2 m), 1976 (46.0 m) and 1979 (52.7 m). These depths define the base of the upper crust at the time of drilling. The bulk of the core consists of a gray, olivine-phyric basalt matrix, which locally contains coarser-grained diabasic segregation veins. The most important megascopic variation in the matrix rock is its variation in olivine content. The upper 15 m of crust is very olivine-rich. Abundance and average size of olivine decrease irregularly downward to 23 m; between 23 and 40 m the rock contains 5-10% of small olivine phenocrysts. Below 40 m. olivine content and average grainsize rise sharply. Olivine contents remain high (20-45%, by volume) throughout the lower crust, except for a narrow (< 6 m) olivine depleted zone near the basalt contact. Petrographically the olivine phenocrysts in Kilauea Iki can be divided into two types. Type 1 phenocrysts are large (1-12 mm long), with irregular blocky outlines, and often contain kink bands. Type 2 crystals are relatively small (0.5-2 mm in length), euhedral and undeformed. The variations in olivine content of the matrix rock are almost entirely variations in the amount of type 1 olivines. Sharp mineral layering of any sort is rare in Kilauea Iki. However, the depth range 41-52 m is marked by the frequent occurrence of steeply dipping (70°-90°) bands or bodies of slightly vuggy olivine-rich rock locally capped with a small cupola of segregation-vein material. In thin section there is clear evidence for relative movement of melt and crystals within these structures. The segregation veins occur only in the upper crust. The most widely distributed (occurring from 4.5-59.4 m) are thin veins (most < 5 cm thick), which cut the core at moderate angles and appear to have been derived from the immediately adjacent wall-rock by filter pressing. There is also a series of thicker (0.1-1.5 m) segregation veins, which recur every 2-3 m, between 20 and 52 m. These have subhorizontal contacts and appear, from similarities in thickness and spacing, to correlate between drill holes as much as 100 m apart. These large veins are not derived from the adjacent wallrock: their mechanism of formation is still problematical. The total thickness of segregation veins in Kilauea Iki is 3-6 m in the central part of the lake, corresponding to 6-11% of the upper crust. Whole-rock compositions for Kilauea Iki fall into two groups: the matrix rock ranges from 20-7.5% MgO, while the segregation veins all contain between 6.0 and 4.5% MgO. There are no whole-rock compositions of intermediate MgO content. Samples from < 12 m show eruption-controlled chemistry. Below that depth, matrix rock compositions have higher Al2O3, TiO2 and alkalies, and lower CaO and FeO, at a given MgO content than do the eruption pumices. The probable causes of this are assimilation of low-melting components from foundered crust, plus removal of olivine, plus removal of minor augite, for rocks with MgO contents of < 8.0%. Given the observed rate of growth of the upper crust, one can infer that significant removal of the type 1 olivine phenocrysts from the upper part of the lake began in 1963 and ceased sometime prior to 1972. The process. probably gravitative settling, appears to have been inhibited earlier by gas streaming from the lower part of the lens of melt. The olivine cumulate zone, which extends into the upper crust, contains relatively few (25-40%) olivine crystals, few of which actually touch each other. The diffuseness of the cumulate zone raises the possibility that the crystals were coated with a relatively visous boundary layer of melt which moved with them. Calculations of the Stokes’ law settling rates of the largest olivine crystals found at the base of the crust in 1975-76 suggest that the «melt» had a viscosity of > 106 poises, and probably had the properties of a Bingham body, rather than a Newtonian fluid, by that date, which was several years after olivine removal ceased.

Fractionation of Exosomes and DNA using Size-Based Separation at the Nanoscale

NASA Astrophysics Data System (ADS)

Wunsch, Benjamin; Smith, Joshua; Wang, Chao; Gifford, Stacey; Brink, Markus; Bruce, Robert; Solovitzky, Gustavo; Austin, Robert; Astier, Yann

Exosomes, a key target of ``liquid biopsies'', are nano-vesicles found in nearly all biological fluids. Exosomes are secreted by eukaryotic and prokaryotic cells alike, and contain information about their originating cells, including surface proteins, cytoplasmic proteins, and nucleic acids. One challenge in studying exosome morphology is the difficulty of sorting exosomes by size and surface markers. Common separation techniques for exosomes include ultracentrifugation and ultrafiltration, for preparation of large volume samples, but these techniques often show contamination and significant heterogeneity between preparations. To date, deterministic lateral displacement (DLD) pillar arrays in silicon have proven an efficient technology to sort, separate, and enrich micron-scale particles including human parasites, eukaryotic cells, blood cells, and circulating tumor cells in blood; however, the DLD technology has never been translated to the true nanoscale, where it could function on bio-colloids such as exosomes. We have fabricated nanoscale DLD (nanoDLD) arrays capable of rapidly sorting colloids down to 20 nm in continuous flow, and demonstrated size sorting of individual exosome vesicles and dsDNA polymers, opening the potential for on-chip biomolecule separation and diagnosti

Microfluidic Blood Cell Preparation: Now and Beyond

PubMed Central

Yu, Zeta Tak For; Yong, Koh Meng Aw; Fu, Jianping

2014-01-01

Blood plays an important role in homeostatic regulation with each of its cellular components having important therapeutic and diagnostic uses. Therefore, separation and sorting of blood cells has been of a great interest to clinicians and researchers. However, while conventional methods of processing blood have been successful in generating relatively pure fractions, they are time consuming, labor intensive, and are not optimal for processing small volume blood samples. In recent years, microfluidics has garnered great interest from clinicians and researchers as a powerful technology for separating blood into different cell fractions. As microfluidics involves fluid manipulation at the microscale level, it has the potential for achieving high-resolution separation and sorting of blood cells down to a single-cell level, with an added benefit of integrating physical and biological methods for blood cell separation and analysis on the same single chip platform. This paper will first review the conventional methods of processing and sorting blood cells, followed by a discussion on how microfluidics is emerging as an efficient tool to rapidly change the field of blood cell sorting for blood-based therapeutic and diagnostic applications. PMID:24515899

How many neurons can we see with current spike sorting algorithms?

PubMed Central

Pedreira, Carlos; Martinez, Juan; Ison, Matias J.; Quian Quiroga, Rodrigo

2012-01-01

Recent studies highlighted the disagreement between the typical number of neurons observed with extracellular recordings and the ones to be expected based on anatomical and physiological considerations. This disagreement has been mainly attributed to the presence of sparsely firing neurons. However, it is also possible that this is due to limitations of the spike sorting algorithms used to process the data. To address this issue, we used realistic simulations of extracellular recordings and found a relatively poor spike sorting performance for simulations containing a large number of neurons. In fact, the number of correctly identified neurons for single-channel recordings showed an asymptotic behavior saturating at about 8–10 units, when up to 20 units were present in the data. This performance was significantly poorer for neurons with low firing rates, as these units were twice more likely to be missed than the ones with high firing rates in simulations containing many neurons. These results uncover one of the main reasons for the relatively low number of neurons found in extracellular recording and also stress the importance of further developments of spike sorting algorithms. PMID:22841630

Knee point search using cascading top-k sorting with minimized time complexity.

PubMed

Wang, Zheng; Tseng, Shian-Shyong

2013-01-01

Anomaly detection systems and many other applications are frequently confronted with the problem of finding the largest knee point in the sorted curve for a set of unsorted points. This paper proposes an efficient knee point search algorithm with minimized time complexity using the cascading top-k sorting when a priori probability distribution of the knee point is known. First, a top-k sort algorithm is proposed based on a quicksort variation. We divide the knee point search problem into multiple steps. And in each step an optimization problem of the selection number k is solved, where the objective function is defined as the expected time cost. Because the expected time cost in one step is dependent on that of the afterwards steps, we simplify the optimization problem by minimizing the maximum expected time cost. The posterior probability of the largest knee point distribution and the other parameters are updated before solving the optimization problem in each step. An example of source detection of DNS DoS flooding attacks is provided to illustrate the applications of the proposed algorithm.

Earth-to-Orbit Laser Launch Simulation for a Lightcraft Technology Demonstrator

NASA Astrophysics Data System (ADS)

Richard, J. C.; Morales, C.; Smith, W. L.; Myrabo, L. N.

2006-05-01

Optimized laser launch trajectories have been developed for a 1.4 m diameter, 120 kg (empty mass) Lightcraft Technology Demonstrator (LTD). The lightcraft's combined-cycle airbreathing/rocket engine is designed for single-stage-to-orbit flights with a mass ratio of 2 propelled by a 100 MW class ground-based laser built on a 3 km mountain peak. Once in orbit, the vehicle becomes an autonomous micro-satellite. Two types of trajectories were simulated with the SORT (Simulation and Optimization of Rocket Trajectories) software package: a) direct GBL boost to orbit, and b) GBL boost aided by laser relay satellite. Several new subroutines were constructed for SORT to input engine performance (as a function of Mach number and altitude), vehicle aerodynamics, guidance algorithms, and mass history. A new guidance/steering option required the lightcraft to always point at the GBL or laser relay satellite. SORT iterates on trajectory parameters to optimize vehicle performance, achieve a desired criteria, or constrain the solution to avoid some specific limit. The predicted laser-boost performance for the LTD is undoubtedly revolutionary, and SORT simulations have helped to define this new frontier.

Summary of results of frictional sliding studies, at confining pressures up to 6.98 kb, in selected rock materials

USGS Publications Warehouse

Summers, R.; Byerlee, J.

1977-01-01

This report is a collection of stress-strain charts which were produced by deforming selected simuiated fault gouge materials. Several sets of samples consisted of intact cylinders, 1.000 inch in diameter and 2.500 inches long. The majority of the samples consisted of thin layers of the selected sample material, inserted within a diagonal sawcut in a 1.000-inch by 2.500-inch Westerly Granite cylinder. Two sorts of inserts were used. The first consisted of thin wafers cut from 1.000-inch-diameter cores of the rock being tested. The other consisted of thin layers of crushed material packed onto the sawcut surface. In several groups of tests using various thicknesses (0.010 inch to 0.160 inch) of a given type material there were variations in the stress level and/or stability of sliding as a function of the fault zone width. Because of this we elected to use a standard 0.025-inch width fault zone to compare the frictional properties of many of the different types of rock materials. This 0.025-inch thickness was chosen partially because this thickness of crushed granite behaves approximately the same as a fractured sample of initially intact granite, and also because this is near the lower limit at which we could cut intact wafers for those samples that were prepared from thin slices of rock. One series of tests was done with saw cut granite cylinders without fault gouge inserts. All of these tests were done in a hydraulically operated triaxial testing machine. The confining pressure (δ1, least principal stress) was applied by pumping petroleum ether into a pressure vessel. The differential stress (δ3-δ1) was applied by a hydraulically operated ram that could be advanced into the pressure vessel at any of several strain rates (10-4sec-1, 10-5sec-1, 10-6sec-1, 10-7sec-1, or 10-8sec-1). All samples were jacketed in polyurethane tubing to exclude the confining pressure medium from the samples. The majority of the samples, with the exception of some of the initially intact rocks, also had thin copper jackets. These served to hold the saw cut parts of the granite sample holders in alignment while the samples were handled and pushed into the polyurethane jackets.

Automatic online spike sorting with singular value decomposition and fuzzy C-mean clustering

PubMed Central

2012-01-01

Background Understanding how neurons contribute to perception, motor functions and cognition requires the reliable detection of spiking activity of individual neurons during a number of different experimental conditions. An important problem in computational neuroscience is thus to develop algorithms to automatically detect and sort the spiking activity of individual neurons from extracellular recordings. While many algorithms for spike sorting exist, the problem of accurate and fast online sorting still remains a challenging issue. Results Here we present a novel software tool, called FSPS (Fuzzy SPike Sorting), which is designed to optimize: (i) fast and accurate detection, (ii) offline sorting and (iii) online classification of neuronal spikes with very limited or null human intervention. The method is based on a combination of Singular Value Decomposition for fast and highly accurate pre-processing of spike shapes, unsupervised Fuzzy C-mean, high-resolution alignment of extracted spike waveforms, optimal selection of the number of features to retain, automatic identification the number of clusters, and quantitative quality assessment of resulting clusters independent on their size. After being trained on a short testing data stream, the method can reliably perform supervised online classification and monitoring of single neuron activity. The generalized procedure has been implemented in our FSPS spike sorting software (available free for non-commercial academic applications at the address: http://www.spikesorting.com) using LabVIEW (National Instruments, USA). We evaluated the performance of our algorithm both on benchmark simulated datasets with different levels of background noise and on real extracellular recordings from premotor cortex of Macaque monkeys. The results of these tests showed an excellent accuracy in discriminating low-amplitude and overlapping spikes under strong background noise. The performance of our method is competitive with respect to other robust spike sorting algorithms. Conclusions This new software provides neuroscience laboratories with a new tool for fast and robust online classification of single neuron activity. This feature could become crucial in situations when online spike detection from multiple electrodes is paramount, such as in human clinical recordings or in brain-computer interfaces. PMID:22871125

Optimization of flow cytometric detection and cell sorting of transgenic Plasmodium parasites using interchangeable optical filters

PubMed Central

2012-01-01

Background Malaria remains a major cause of morbidity and mortality worldwide. Flow cytometry-based assays that take advantage of fluorescent protein (FP)-expressing malaria parasites have proven to be valuable tools for quantification and sorting of specific subpopulations of parasite-infected red blood cells. However, identification of rare subpopulations of parasites using green fluorescent protein (GFP) labelling is complicated by autofluorescence (AF) of red blood cells and low signal from transgenic parasites. It has been suggested that cell sorting yield could be improved by using filters that precisely match the emission spectrum of GFP. Methods Detection of transgenic Plasmodium falciparum parasites expressing either tdTomato or GFP was performed using a flow cytometer with interchangeable optical filters. Parasitaemia was evaluated using different optical filters and, after optimization of optics, the GFP-expressing parasites were sorted and analysed by microscopy after cytospin preparation and by imaging cytometry. Results A new approach to evaluate filter performance in flow cytometry using two-dimensional dot blot was developed. By selecting optical filters with narrow bandpass (BP) and maximum position of filter emission close to GFP maximum emission in the FL1 channel (510/20, 512/20 and 517/20; dichroics 502LP and 466LP), AF was markedly decreased and signal-background improve dramatically. Sorting of GFP-expressing parasite populations in infected red blood cells at 90 or 95% purity with these filters resulted in 50-150% increased yield when compared to the standard filter set-up. The purity of the sorted population was confirmed using imaging cytometry and microscopy of cytospin preparations of sorted red blood cells infected with transgenic malaria parasites. Discussion Filter optimization is particularly important for applications where the FP signal and percentage of positive events are relatively low, such as analysis of parasite-infected samples with in the intention of gene-expression profiling and analysis. The approach outlined here results in substantially improved yield of GFP-expressing parasites, and requires decreased sorting time in comparison to standard methods. It is anticipated that this protocol will be useful for a wide range of applications involving rare events. PMID:22950515

Automatic online spike sorting with singular value decomposition and fuzzy C-mean clustering.

PubMed

Oliynyk, Andriy; Bonifazzi, Claudio; Montani, Fernando; Fadiga, Luciano

2012-08-08

Understanding how neurons contribute to perception, motor functions and cognition requires the reliable detection of spiking activity of individual neurons during a number of different experimental conditions. An important problem in computational neuroscience is thus to develop algorithms to automatically detect and sort the spiking activity of individual neurons from extracellular recordings. While many algorithms for spike sorting exist, the problem of accurate and fast online sorting still remains a challenging issue. Here we present a novel software tool, called FSPS (Fuzzy SPike Sorting), which is designed to optimize: (i) fast and accurate detection, (ii) offline sorting and (iii) online classification of neuronal spikes with very limited or null human intervention. The method is based on a combination of Singular Value Decomposition for fast and highly accurate pre-processing of spike shapes, unsupervised Fuzzy C-mean, high-resolution alignment of extracted spike waveforms, optimal selection of the number of features to retain, automatic identification the number of clusters, and quantitative quality assessment of resulting clusters independent on their size. After being trained on a short testing data stream, the method can reliably perform supervised online classification and monitoring of single neuron activity. The generalized procedure has been implemented in our FSPS spike sorting software (available free for non-commercial academic applications at the address: http://www.spikesorting.com) using LabVIEW (National Instruments, USA). We evaluated the performance of our algorithm both on benchmark simulated datasets with different levels of background noise and on real extracellular recordings from premotor cortex of Macaque monkeys. The results of these tests showed an excellent accuracy in discriminating low-amplitude and overlapping spikes under strong background noise. The performance of our method is competitive with respect to other robust spike sorting algorithms. This new software provides neuroscience laboratories with a new tool for fast and robust online classification of single neuron activity. This feature could become crucial in situations when online spike detection from multiple electrodes is paramount, such as in human clinical recordings or in brain-computer interfaces.

Rockfall hazard and risk assessment in the Yosemite Valley, California, USA

USGS Publications Warehouse

Guzzetti, F.; Reichenbach, P.; Wieczorek, G.F.

2003-01-01

Rock slides and rock falls are the most frequent types of slope movements in Yosemite National Park, California. In historical time (1857-2002) 392 rock falls and rock slides have been documented in the valley, and some of them have been mapped in detail. We present the results of an attempt to assess rock fall hazards in the Yosemite Valley. Spatial and temporal aspects of rock falls hazard are considered. A detailed inventory of slope movements covering the 145-year period from 1857 to 2002 is used to determine the frequency-volume statistics of rock falls and to estimate the annual frequency of rock falls, providing the temporal component of rock fall hazard. The extent of the areas potentially subject to rock fall hazards in the Yosemite Valley were obtained using STONE, a physically-based rock fall simulation computer program. The software computes 3-dimensional rock fall trajectories starting from a digital elevation model (DEM), the location of rock fall release points, and maps of the dynamic rolling friction coefficient and of the coefficients of normal and tangential energy restitution. For each DEM cell the software calculates the number of rock falls passing through the cell, the maximum rock fall velocity and the maximum flying height. For the Yosemite Valley, a DEM with a ground resolution of 10 ?? 10 m was prepared using topographic contour lines from the U.S. Geological Survey 1:24 000-scale maps. Rock fall release points were identified as DEM cells having a slope steeper than 60??, an assumption based on the location of historical rock falls. Maps of the normal and tangential energy restitution coefficients and of the rolling friction coefficient were produced from a surficial geologic map. The availability of historical rock falls mapped in detail allowed us to check the computer program performance and to calibrate the model parameters. Visual and statistical comparison of the model results with the mapped rock falls confirmed the accuracy of the model. The model results are compared with a previous map of rockfall talus and with a geomorphic assessment of rock fall hazard based on potential energy referred to as a shadow angle approach, recently completed for the Yosemite Valley. The model results are then used to identify the roads and trails more subject to rock fall hazard. Of the 166.5 km of roads and trails in the Yosemite Valley 31.2% were found to be potentially subject to rock fall hazard, of which 14% are subject to very high hazard. ?? European Geosciences Union 2003.

Environmental characterisation of coal mine waste rock in the field: an example from New Zealand

NASA Astrophysics Data System (ADS)

Hughes, J.; Craw, D.; Peake, B.; Lindsay, P.; Weber, P.

2007-08-01

Characterisation of mine waste rock with respect to acid generation potential is a necessary part of routine mine operations, so that environmentally benign waste rock stacks can be constructed for permanent storage. Standard static characterisation techniques, such as acid neutralisation capacity (ANC), maximum potential acidity, and associated acid-base accounting, require laboratory tests that can be difficult to obtain rapidly at remote mine sites. We show that a combination of paste pH and a simple portable carbonate dissolution test, both techniques that can be done in the field in a 15 min time-frame, is useful for distinguishing rocks that are potentially acid-forming from those that are acid-neutralising. Use of these techniques could allow characterisation of mine wastes at the metre scale during mine excavation operations. Our application of these techniques to pyrite-bearing (total S = 1-4 wt%) but variably calcareous coal mine overburden shows that there is a strong correlation between the portable carbonate dissolution technique and laboratory-determined ANC measurements (range of 0-10 wt% calcite equivalent). Paste pH measurements on the same rocks are bimodal, with high-sulphur, low-calcite rocks yielding pH near 3 after 10 min, whereas high-ANC rocks yield paste pH of 7-8. In our coal mine example, the field tests were most effective when used in conjunction with stratigraphy. However, the same field tests have potential for routine use in any mine in which distinction of acid-generating rocks from acid-neutralising rocks is required. Calibration of field-based acid-base accounting characteristics of the rocks with laboratory-based static and/or kinetic tests is still necessary.

Musings about the word “absolute” in Earth science literature

NASA Astrophysics Data System (ADS)

Duffield, Wendell A.

Rather than face the prospect of old age and retirement sometimes disturbed by the niggling feeling that I should have said something earlier, here is a public statement about a pet peeve concerning the use, if not the abuse and misuse, of the word absolute as it appears in a variety of Earth science literature. The triggering event for taking action, after a couple of decades of inaction, was seeing yet another title of the sort “The Absolute Age of the… Volcanic Rock”, combined with a little too much spare time during evenings in a lonely, isolated field camp.Because my interests are principally in magmatic systems and secondarily in global plate tectonics, I see absolute used mostly with reference to the ages of igneous rocks and to the motions of lithospheric plates. People in other fields of Earth science surely will think of their own examples.

Dissecting Stop Transfer versus Conservative Sorting Pathways for Mitochondrial Inner Membrane Proteins in Vivo*

PubMed Central

Park, Kwangjin; Botelho, Salomé Calado; Hong, Joonki; Österberg, Marie; Kim, Hyun

2013-01-01

Mitochondrial inner membrane proteins that carry an N-terminal presequence are sorted by one of two pathways: stop transfer or conservative sorting. However, the sorting pathway is known for only a small number of proteins, in part due to the lack of robust experimental tools with which to study. Here we present an approach that facilitates determination of inner membrane protein sorting pathways in vivo by fusing a mitochondrial inner membrane protein to the C-terminal part of Mgm1p containing the rhomboid cleavage region. We validated the Mgm1 fusion approach using a set of proteins for which the sorting pathway is known, and determined sorting pathways of inner membrane proteins for which the sorting mode was previously uncharacterized. For Sdh4p, a multispanning membrane protein, our results suggest that both conservative sorting and stop transfer mechanisms are required for insertion. Furthermore, the sorting process of Mgm1 fusion proteins was analyzed under different growth conditions and yeast mutant strains that were defective in the import motor or the m-AAA protease function. Our results show that the sorting of mitochondrial proteins carrying moderately hydrophobic transmembrane segments is sensitive to cellular conditions, implying that mitochondrial import and membrane sorting in the physiological environment may be dynamically tuned. PMID:23184936

Discovery of Prostate Cancer Tumor Suppressors and Mediators of MDV3100 Resistance through in Vivo RNA Interference Screen

DTIC Science & Technology

2014-05-01

NE phenotype. Figure 5: Rational of the FACS-based screen. Left, the concept of increase of NSE and decrease of PSMA with NED. Right, the...of AR dependency is associated with increase in Prostate specific membrane antigen ( PSMA ) expression. Thus, we also decided to sort for cells that...have decreased PSMA expression with prolonged Enzalutamide treatment. Using the above markers and FACS we attempted to sort out 4 populations of

Seminal plasma affects sperm sex sorting in boars.

PubMed

Alkmin, Diego V; Parrilla, Inmaculada; Tarantini, Tatiana; Del Olmo, David; Vazquez, Juan M; Martinez, Emilio A; Roca, Jordi

2016-04-01

Two experiments were conducted in boar semen samples to evaluate how both holding time (24h) and the presence of seminal plasma (SP) before sorting affect sperm sortability and the ability of sex-sorted spermatozoa to tolerate liquid storage. Whole ejaculate samples were divided into three aliquots immediately after collection: one was diluted (1:1, v/v) in Beltsville thawing solution (BTS; 50% SP); the SP of the other two aliquots was removed and the sperm pellets were diluted with BTS + 10% of their own SP (10% SP) or BTS alone (0% SP). The three aliquots of each ejaculate were divided into two portions, one that was processed immediately for sorting and a second that was sorted after 24h storage at 15-17°C. In the first experiment, the ability to exhibit well-defined X- and Y-chromosome-bearing sperm peaks (split) in the cytometry histogram and the subsequent sorting efficiency were assessed (20 ejaculates). In contrast with holding time, the SP proportion influenced the parameters examined, as evidenced by the higher number of ejaculates exhibiting split and better sorting efficiency (P<0.05) in semen samples with 0-10% SP compared with those with 50% SP. In a second experiment, the quality (viability, total and progressive motility) and functionality (plasma membrane fluidity and intracellular generation of reactive oxygen species) of sex-sorted spermatozoa were evaluated after 0, 72 and 120h storage at 15-17°C (10 ejaculates). Holding time and SP proportion did not influence the quality or functionality of stored sex-sorted spermatozoa. In conclusion, a holding time as long as 24h before sorting did not negatively affect sex sorting efficiency or the ability of sorted boar spermatozoa to tolerate long-term liquid storage. A high proportion of SP (50%) in the semen samples before sorting reduced the number of ejaculates to be sorted and negatively influenced the sorting efficiency, but did not affect the ability of sex-sorted spermatozoa to tolerate liquid storage.

Engineering geology model of the Crater Lake outlet, Mt. Ruapehu, New Zealand, to inform rim breakout hazard

NASA Astrophysics Data System (ADS)

Cook, Stefan C. W.; Kennedy, Ben M.; Villeneuve, Marlène C.

2018-01-01

Mt. Ruapehu, in the central North Island of New Zealand, hosts a hot acidic Crater Lake over the active volcanic vent with a surface elevation of c. 2530 m.a.s.l. Volcanic activity and other montane processes have previously resulted in catastrophic releases of some or all of the c. 10 Mm3 of water retained in the lake, creating serious hazards downstream. A major lahar in March 2007 exposed a 10 m high face representative of the rock units impounding the lake, providing an opportunity to conduct both field and laboratory analysis to characterise the rock mass conditions at the outlet to assess the stability of the outlet area. This paper presents an engineering geology model of Crater Lake outlet. Our model shows three andesitic geological units at the outlet, each with different geological histories and physical and mechanical properties, which impact its stability. Geotechnical methods used to characterise the outlet include laboratory testing of the strength, stiffness, porosity and unit weight, and field-based rock mass characterisation using the geological strength index (GSI) and rock mass rating (RMR). Field observations, geomorphology mapping, historic and contemporary photographs, and laboratory results are combined to create cross sections that provide key information for establishing the engineering geology model. The units are recognised in what is informally termed the Crater Lake Formation: i) The upper surface layer is a c. 2 m thick sub-horizontal dark grey lava unit (Armoured Lava Ledge) with sub-horizontal cooling joints spaced at 0.2 m to 2.0 m intervals. The intact rock has a porosity range of 15-27%, density range of 1723-2101 kg/m3, GSI range of 45-75, and unconfined compressive strength (UCS) range of 19-48 MPa. ii) Below this, and outcropping down the majority of the outlet waterfall is a poorly sorted breccia unit composed of block and matrix material (Lava Breccia). The blocks range from 0.1 m to 0.8 m in diameter with an average porosity of 21%, a density of 1956 kg/m3 and strength of 85 MPa. The matrix has soil-like properties with an estimated UCS of 1.5 MPa. iii) At the base of the waterfall, the material sharply transitions into a light grey, slightly weathered unit (Lower Grey Member). This lower unit has an irregular surface expression with sub-vertical discontinuities. Porosity is 6%, density is 2569 kg/m3, the GSI range is 65-75, and the UCS is 98 MPa. The engineering geology model portrays the relationships between the units in three dimensions, highlights key structures and takes into consideration the material source, transportation and depositional processes. Historical outlet photographs suggest past eruptive and glacial activities are both significant factors controlling the deposition and erosion of material at the outlet. The Lower Grey Member appears to be a sound material for the outlet and water fall to be founded on. The upper aa Armoured Lava Ledge currently has moderate strength and GSI, and is resistive, providing protection for the underlying weaker block and matrix unit, however, continued incision by the outlet stream will eventually expose the weaker block and matrix material of the Lava Breccia. Once exposed, the Lava Breccia could rapidly erode or fail down to the Lower Grey Member and could potentially release 1 Mm3 of hot, acidic Crater Lake water. We recommend that erosion rates for the upper Armoured Lava Ledge be established to aid in preparation for eventual rim breakout.

Investigation and hazard assessment of the 2003 and 2007 Staircase Falls rock falls, Yosemite National Park, California, USA

USGS Publications Warehouse

Wieczorek, G.F.; Stock, Gregory M.; Reichenbach, P.; Snyder, J.B.; Borchers, J.W.; Godt, J.W.

2008-01-01

Since 1857 more than 600 rock falls, rock slides, debris slides, and debris flows have been documented in Yosemite National Park, with rock falls in Yosemite Valley representing the majority of the events. On 26 December 2003, a rock fall originating from west of Glacier Point sent approximately 200 m 3 of rock debris down a series of joint-controlled ledges to the floor of Yosemite Valley. The debris impacted talus near the base of Staircase Falls, producing fragments of flying rock that struck occupied cabins in Curry Village. Several years later on 9 June 2007, and again on 26 July 2007, smaller rock falls originated from the same source area. The 26 December 2003 event coincided with a severe winter storm and was likely triggered by precipitation and/or frost wedging, but the 9 June and 26 July 2007 events lack recognizable triggering mechanisms. We investigated the geologic and hydrologic factors contributing to the Staircase Falls rock falls, including bedrock lithology, weathering, joint spacing and orientations, and hydrologic processes affecting slope stability. We improved upon previous geomorphic assessment of rock-fall hazards, based on a shadow angle approach, by using STONE, a three-dimensional rock-fall simulation computer program. STONE produced simulated rock-fall runout patterns similar to the mapped extent of the 2003 and 2007 events, allowing us to simulate potential future rock falls from the Staircase Falls detachment area. Observations of recent rock falls, mapping of rock debris, and simulations of rock fall runouts beneath the Staircase Falls detachment area suggest that rock-fall hazard zones extend farther downslope than the extent previously defined by mapped surface talus deposits.

Surface and subsurface facies architecture of a small hydroexplosive, rhyolitic centre in the Mesoproterozoic Gawler Range Volcanics, South Australia

NASA Astrophysics Data System (ADS)

Roache, M. W.; Allen, S. R.; McPhie, J.

2000-12-01

At Menninnie Dam, South Australia, a drilling program has revealed a complete section through the subsurface feeder system and erupted products of a small, hydroexplosive, rhyolitic centre within the Mesoproterozoic Gawler Range Volcanics. Porphyritic rhyolite intruded near-vertical faults in the Palaeoproterozoic basement and at less than a few hundred metres depth, interacted with fault-hosted (hot?) groundwater. Hydrofracturing of the wall rock occurred in advance of and at the margins of the rhyolitic intrusions. The rhyolitic intrusions have peperitic margins and grade into discordant lithic-rich PB facies. The advancing fragmentation front intersected the palaeosurface, triggering phreatic eruptions that deposited a poorly sorted, lithic-rich explosion breccia. Rhyolite then rose to the surface through the intrusive breccias and shallow-seated magma-water interaction occurred in the conduit within <50 m of the surface. As the magma discharge rate increased, ;dry; explosive activity prevailed. A fall deposit, the top of which is welded, was deposited close to the vent, and in more distal locations (>800 m from the inferred source), the products include muddy sandstone and pumice breccia. At the end of the eruption, rhyolitic lava was extruded in the form of a small dome. The presence of contemporaneous Pb-Zn-Ag mineralisation in the wall rocks suggests that an active hydrothermal system may have been involved in the formation of the Menninnie Dam hydroexplosive volcanic centre.

Support for designing waste sorting systems: A mini review.

PubMed

Rousta, Kamran; Ordoñez, Isabel; Bolton, Kim; Dahlén, Lisa

2017-11-01

This article presents a mini review of research aimed at understanding material recovery from municipal solid waste. It focuses on two areas, waste sorting behaviour and collection systems, so that research on the link between these areas could be identified and evaluated. The main results presented and the methods used in the articles are categorised and appraised. The mini review reveals that most of the work that offered design guidelines for waste management systems was based on optimising technical aspects only. In contrast, most of the work that focused on user involvement did not consider developing the technical aspects of the system, but was limited to studies of user behaviour. The only clear consensus among the articles that link user involvement with the technical system is that convenient waste collection infrastructure is crucial for supporting source separation. This mini review reveals that even though the connection between sorting behaviour and technical infrastructure has been explored and described in some articles, there is still a gap when using this knowledge to design waste sorting systems. Future research in this field would benefit from being multidisciplinary and from using complementary methods, so that holistic solutions for material recirculation can be identified. It would be beneficial to actively involve users when developing sorting infrastructures, to be sure to provide a waste management system that will be properly used by them.

Realistic Expectations for Rock Identification.

ERIC Educational Resources Information Center

Westerback, Mary Elizabeth; Azer, Nazmy

1991-01-01

Presents a rock classification scheme for use by beginning students. The scheme is based on rock textures (glassy, crystalline, clastic, and organic framework) and observable structures (vesicles and graded bedding). Discusses problems in other rock classification schemes which may produce confusion, misidentification, and anxiety. (10 references)…

Stochastic Model of Vesicular Sorting in Cellular Organelles

NASA Astrophysics Data System (ADS)

Vagne, Quentin; Sens, Pierre

2018-02-01

The proper sorting of membrane components by regulated exchange between cellular organelles is crucial to intracellular organization. This process relies on the budding and fusion of transport vesicles, and should be strongly influenced by stochastic fluctuations, considering the relatively small size of many organelles. We identify the perfect sorting of two membrane components initially mixed in a single compartment as a first passage process, and we show that the mean sorting time exhibits two distinct regimes as a function of the ratio of vesicle fusion to budding rates. Low ratio values lead to fast sorting but result in a broad size distribution of sorted compartments dominated by small entities. High ratio values result in two well-defined sorted compartments but sorting is exponentially slow. Our results suggest an optimal balance between vesicle budding and fusion for the rapid and efficient sorting of membrane components and highlight the importance of stochastic effects for the steady-state organization of intracellular compartments.

Isotope analysis of crystalline impact melt rocks from Apollo 16 stations 11 and 13, North Ray Crater

NASA Technical Reports Server (NTRS)

Reimold, W. U.; Nyquist, L. E.; Bansal, B. M.; Shih, C.-Y.; Weismann, H.; Wooden, J. L.; Mackinnon, I. D. R.

1985-01-01

The North Ray Crater Target Rock Consortium was formed to study a large number of rake samples collected at Apollo 16 stations 11 and 13 with comparative chemical, mineralogical, and chronological techniques in order to provide a larger data base for the discussion of lunar highland evolution in the vicinity of the Apollo 16 landing region. The present investigation is concerned with Rb-Sr and Sm-Nd isotopic analyses of a number of whole-rock samples of feldspathic microporhyritic (FM) impact melt, a sample type especially abundant among the North Ray crater (station 11) sample collection. Aspects of sample mineralogy and analytical procedures are discussed, taking into account FM impact melt rocks 6715 and 63538, intergranular impact melt rock 67775, subophitic impact melt rock 67747, subophitic impact melt rock 67559, and studies based on the utilization of electron microscopy and mass spectroscopy.

Inventorying rock glaciers: The relevance of definitions, processes and base data

NASA Astrophysics Data System (ADS)

Kellerer-Pirklbauer, Andreas; Lieb, Gerhard Karl; Wagner, Thomas; Winkler, Gerfried

2017-04-01

Rock glacier inventories have been elaborated for many mountain regions during the last decades. Such inventories have been used for instance to determine the current (using intact rock glaciers) or the past extent (using relict ones) of mountain permafrost and its change over time. However, the recognition and delineation of a rock glacier is not always a trivial task in particular in cases where the "typical" rock glacier surface morphology with longitudinal and transversal ridges and furrows is missing. A further inventorying restriction is based on which genetic model for rock glacier formation is used or favored by the elaborator, i.e. glacier-derived rock glaciers (with massive sedimentary or "glacier" ice), talus-derived rock glaciers (dominated by congelation ice), or a mix thereof. In addition to that, relict rock glaciers are commonly more difficult to recognize and to delineate due to the decay of morphological features or the coverage by vegetation. In this regard the geomorphic concept of equifinality plays an important role because similar looking landforms might have been formed as a result of quite different sets of processes and time periods. Two examples illustrating this problem are as follows: (i) relict embryonal rock glaciers or protalus ramparts look very similar to pronival ramparts although the acting process was substantial different; (ii) multiple ridges at a presumed rock glacier front might have been formed by several phases of glacier advance forming a set of terminal moraines. Therefore, the elaboration of a rock glacier inventory is certainly influenced by subjectivity related to the expertise and field knowledge of the mapping person. A further crucial mapping restriction is based upon the used terrain (digital elevation models/DEM and maps) and optical (airborne, spaceborne) data. Under the assumption that improved data bases help to solve the problems mentioned above the authors of this abstract elaborated three generations of rock glacier inventories for the Federal Province of Styria (16,400 km2), Austria, during the last two decades - each time using the best data sources available. The first Styrian rock glacier inventory (StRGI1) was elaborated in the mid-1990s using official maps, aerial photographs, and field verification. The second Styrian rock glacier inventory (StRG2) was elaborated in 2010-2011 using the StRG1, airborne orthophotographs, and photogrammetrically-derived DEMs with a 10m-grid resolution. Finally, the third Styrian rock glacier inventory (StRG3) was elaborated in 2014-2016 using the StRG2, airborne and spaceborne orthophotographs, and an airborne laser scanning-derived DEM with a 1m-grid resolution. The number of mapped rock glaciers increased from less than 400 listed in StRG1, slightly more than 400 in StRG2 to 710 in StRG3. The substantial increase in the number of rock glaciers in StRG3 is particularly related to the used laser scanning-based DEM because relict rock glaciers located at lower elevations in densely vegetated areas and forests have not been detected earlier. This contribution will present examples of inventoried rock glaciers and how their delineation and interpretation changed during the different inventory generations and hence contributes to the ongoing discussion about how to delineate and interpret rock glaciers.

Crystallization history of Kilauea Iki lava lake as seen in drill core recovered in 1967-1979

USGS Publications Warehouse

Helz, R.T.

1980-01-01

Kilauea Iki lava lake formed during the 1959 summit eruption, one of the most picritic eruptions of Kilauea Volcano in the twentieth century. Since 1959 the 110 to 122 m thick lake has cooled slowly, developing steadily thickening upper and lower crusts, with a lens of more molten lava in between. Recent coring dates, with maximum depths reached in the center of the lake, are: 1967 (26.5 m). 1975 (44.2 m), 1976 (46.0 m) and 1979 (52.7 m). These depths define the base of the upper crust at the time of drilling. The bulk of the core consists of a gray, olivine-phyric basalt matrix, which locally contains coarser-grained diabasic segregation veins. The most important megascopic variation in the matrix rock is its variation in olivine content. The upper 15 m of crust is very olivine-rich. Abundance and average size of olivine decrease irregularly downward to 23 m; between 23 and 40 m the rock contains 5-10% of small olivine phenocrysts. Below 40 m. olivine content and average grainsize rise sharply. Olivine contents remain high (20-45%, by volume) throughout the lower crust, except for a narrow (< 6 m) olivine depleted zone near the basalt contact. Petrographically the olivine phenocrysts in Kilauea Iki can be divided into two types. Type 1 phenocrysts are large (1-12 mm long), with irregular blocky outlines, and often contain kink bands. Type 2 crystals are relatively small (0.5-2 mm in length), euhedral and undeformed. The variations in olivine content of the matrix rock are almost entirely variations in the amount of type 1 olivines. Sharp mineral layering of any sort is rare in Kilauea Iki. However, the depth range 41-52 m is marked by the frequent occurrence of steeply dipping (70??-90??) bands or bodies of slightly vuggy olivine-rich rock locally capped with a small cupola of segregation-vein material. In thin section there is clear evidence for relative movement of melt and crystals within these structures. The segregation veins occur only in the upper crust. The most widely distributed (occurring from 4.5-59.4 m) are thin veins (most < 5 cm thick), which cut the core at moderate angles and appear to have been derived from the immediately adjacent wall-rock by filter pressing. There is also a series of thicker (0.1-1.5 m) segregation veins, which recur every 2-3 m, between 20 and 52 m. These have subhorizontal contacts and appear, from similarities in thickness and spacing, to correlate between drill holes as much as 100 m apart. These large veins are not derived from the adjacent wallrock: their mechanism of formation is still problematical. The total thickness of segregation veins in Kilauea Iki is 3-6 m in the central part of the lake, corresponding to 6-11% of the upper crust. Whole-rock compositions for Kilauea Iki fall into two groups: the matrix rock ranges from 20-7.5% MgO, while the segregation veins all contain between 6.0 and 4.5% MgO. There are no whole-rock compositions of intermediate MgO content. Samples from < 12 m show eruption-controlled chemistry. Below that depth, matrix rock compositions have higher Al2O3, TiO2 and alkalies, and lower CaO and FeO, at a given MgO content than do the eruption pumices. The probable causes of this are assimilation of low-melting components from foundered crust, plus removal of olivine, plus removal of minor augite, for rocks with MgO contents of < 8.0%. Given the observed rate of growth of the upper crust, one can infer that significant removal of the type 1 olivine phenocrysts from the upper part of the lake began in 1963 and ceased sometime prior to 1972. The process. probably gravitative settling, appears to have been inhibited earlier by gas streaming from the lower part of the lens of melt. The olivine cumulate zone, which extends into the upper crust, contains relatively few (25-40%) olivine crystals, few of which actually touch each other. The diffuseness of the cumulate zone raises the possibility that the crystals were coated with a relatively visous boundary layer

Nanoscale lateral displacement arrays for the separation of exosomes and colloids down to 20 nm

NASA Astrophysics Data System (ADS)

Austin, Robert; Wunsch, Benjamin; Smith, Joshua; Gifford, Stacey; Wang, Chao; Brink, Markus; Bruce, Robert; Stolovitzky, Gustavo; Astier, Yann

Deterministic lateral displacement (DLD) pillar arrays are an efficient technology to sort, separate and enrich micrometre-scale particles, which include parasites1, bacteria2, blood cells3 and circulating tumour cells in blood4. However, this technology has not been translated to the true nanoscale, where it could function on biocolloids, such as exosomes. Exosomes, a key target of liquid biopsies, are secreted by cells and contain nucleic acid and protein information about their originating tissue5. One challenge in the study of exosome biology is to sort exosomes by size and surface markers6, 7. We use manufacturable silicon processes to produce nanoscale DLD (nano-DLD) arrays of uniform gap sizes ranging from 25 to 235 nm. We show that at low Péclet (Pe) numbers, at which diffusion and deterministic displacement compete, nano-DLD arrays separate particles between 20 to 110 nm based on size with sharp resolution. Further, we demonstrate the size-based displacement of exosomes, and so open up the potential for on-chip sorting and quantification of these important biocolloids.

Nanoscale lateral displacement arrays for the separation of exosomes and colloids down to 20 nm

NASA Astrophysics Data System (ADS)

Wunsch, Benjamin H.; Smith, Joshua T.; Gifford, Stacey M.; Wang, Chao; Brink, Markus; Bruce, Robert L.; Austin, Robert H.; Stolovitzky, Gustavo; Astier, Yann

2016-11-01

Deterministic lateral displacement (DLD) pillar arrays are an efficient technology to sort, separate and enrich micrometre-scale particles, which include parasites, bacteria, blood cells and circulating tumour cells in blood. However, this technology has not been translated to the true nanoscale, where it could function on biocolloids, such as exosomes. Exosomes, a key target of 'liquid biopsies', are secreted by cells and contain nucleic acid and protein information about their originating tissue. One challenge in the study of exosome biology is to sort exosomes by size and surface markers. We use manufacturable silicon processes to produce nanoscale DLD (nano-DLD) arrays of uniform gap sizes ranging from 25 to 235 nm. We show that at low Péclet (Pe) numbers, at which diffusion and deterministic displacement compete, nano-DLD arrays separate particles between 20 to 110 nm based on size with sharp resolution. Further, we demonstrate the size-based displacement of exosomes, and so open up the potential for on-chip sorting and quantification of these important biocolloids.

The effects of priming with age stereotypes on a PC-based mail-sorting task.

PubMed

Kirchner, Christine; Bock, Otmar Leo; Völker, Ina

2017-04-01

This study examines whether unconscious priming of attitudes towards older age might change the self-efficacy of older employees, and thus modify their performance at work. Three age- and gender-matched groups of 20 participants were primed with positive, negative or no age stereotypes by means of the scrambled sentence task, and were then transferred to a cognitively demanding PC-based mail-sorting task. Participants' accuracy on the latter task was significantly higher in the positively primed group than in the unprimed group, and was significantly lower in the negatively primed group than in the unprimed group, except for one parameter. These findings indicate that the performance of older workers may indeed be modifiable by unconscious priming. Practitioner Summary: This study analyses whether unconscious priming attitudes towards older age might modify work performance. Participants were primed with the scrambled sentence task and then conducted a cognitive mail-sorting task. The findings indicate that the performance of older workers may indeed be modifiable by unconscious negative as well as positive priming.

A computationally efficient method for incorporating spike waveform information into decoding algorithms.

PubMed

Ventura, Valérie; Todorova, Sonia

2015-05-01

Spike-based brain-computer interfaces (BCIs) have the potential to restore motor ability to people with paralysis and amputation, and have shown impressive performance in the lab. To transition BCI devices from the lab to the clinic, decoding must proceed automatically and in real time, which prohibits the use of algorithms that are computationally intensive or require manual tweaking. A common choice is to avoid spike sorting and treat the signal on each electrode as if it came from a single neuron, which is fast, easy, and therefore desirable for clinical use. But this approach ignores the kinematic information provided by individual neurons recorded on the same electrode. The contribution of this letter is a linear decoding model that extracts kinematic information from individual neurons without spike-sorting the electrode signals. The method relies on modeling sample averages of waveform features as functions of kinematics, which is automatic and requires minimal data storage and computation. In offline reconstruction of arm trajectories of a nonhuman primate performing reaching tasks, the proposed method performs as well as decoders based on expertly manually and automatically sorted spikes.

Evaluation of amplitude-based sorting algorithm to reduce lung tumor blurring in PET images using 4D NCAT phantom.

PubMed

Wang, Jiali; Byrne, James; Franquiz, Juan; McGoron, Anthony

2007-08-01

develop and validate a PET sorting algorithm based on the respiratory amplitude to correct for abnormal respiratory cycles. using the 4D NCAT phantom model, 3D PET images were simulated in lung and other structures at different times within a respiratory cycle and noise was added. To validate the amplitude binning algorithm, NCAT phantom was used to simulate one case of five different respiratory periods and another case of five respiratory periods alone with five respiratory amplitudes. Comparison was performed for gated and un-gated images and for the new amplitude binning algorithm with the time binning algorithm by calculating the mean number of counts in the ROI (region of interest). an average of 8.87+/-5.10% improvement was reported for total 16 tumors with different tumor sizes and different T/B (tumor to background) ratios using the new sorting algorithm. As both the T/B ratio and tumor size decreases, image degradation due to respiration increases. The greater benefit for smaller diameter tumor and lower T/B ratio indicates a potential improvement in detecting more problematic tumors.

Automated processing of shoeprint images based on the Fourier transform for use in forensic science.

PubMed

de Chazal, Philip; Flynn, John; Reilly, Richard B

2005-03-01

The development of a system for automatically sorting a database of shoeprint images based on the outsole pattern in response to a reference shoeprint image is presented. The database images are sorted so that those from the same pattern group as the reference shoeprint are likely to be at the start of the list. A database of 476 complete shoeprint images belonging to 140 pattern groups was established with each group containing two or more examples. A panel of human observers performed the grouping of the images into pattern categories. Tests of the system using the database showed that the first-ranked database image belongs to the same pattern category as the reference image 65 percent of the time and that a correct match appears within the first 5 percent of the sorted images 87 percent of the time. The system has translational and rotational invariance so that the spatial positioning of the reference shoeprint images does not have to correspond with the spatial positioning of the shoeprint images of the database. The performance of the system for matching partial-prints was also determined.

The comparative effectiveness of persuasion, commitment and leader block strategies in motivating sorting.

PubMed

Mickaël, Dupré

2014-04-01

Household waste management has become essential in industrialized countries. For the recycling programs to be a success, all citizens must comply with the developed residential procedures. Governmental bodies are thus dependent on as many people as possible adhering to the sorting systems they develop. Since the 1970s oil crisis, governments have called upon social psychologists to help develop effective communication strategies. These studies have been based on persuasion and behavioral commitment (Kiesler, 1971). Less common are studies based on developing participative communication (Horsley, 1977), a form of communication that relies on individuals to pass on information. After going through the main communication perspectives as they relate to the sorting of household waste, a comparative field study will be presented on the effectiveness of persuasive, committing and participative communication. Participative communication relied on users to pass along information to their neighbors. The results show that the participants who spread information in this way, along with those who made a commitment, changed their behavior to a greater degree than the other participants. Copyright © 2014 Elsevier Ltd. All rights reserved.

Identification of residual leukemic cells by flow cytometry in childhood B-cell precursor acute lymphoblastic leukemia: verification of leukemic state by flow-sorting and molecular/cytogenetic methods.

PubMed

Øbro, Nina F; Ryder, Lars P; Madsen, Hans O; Andersen, Mette K; Lausen, Birgitte; Hasle, Henrik; Schmiegelow, Kjeld; Marquart, Hanne V

2012-01-01

Reduction in minimal residual disease, measured by real-time quantitative PCR or flow cytometry, predicts prognosis in childhood B-cell precursor acute lymphoblastic leukemia. We explored whether cells reported as minimal residual disease by flow cytometry represent the malignant clone harboring clone-specific genomic markers (53 follow-up bone marrow samples from 28 children with B-cell precursor acute lymphoblastic leukemia). Cell populations (presumed leukemic and non-leukemic) were flow-sorted during standard flow cytometry-based minimal residual disease monitoring and explored by PCR and/or fluorescence in situ hybridization. We found good concordance between flow cytometry and genomic analyses in the individual flow-sorted leukemic (93% true positive) and normal (93% true negative) cell populations. Four cases with discrepant results had plausible explanations (e.g. partly informative immunophenotype and antigen modulation) that highlight important methodological pitfalls. These findings demonstrate that with sufficient experience, flow cytometry is reliable for minimal residual disease monitoring in B-cell precursor acute lymphoblastic leukemia, although rare cases require supplementary PCR-based monitoring.

Computer vision-based sorting of Atlantic salmon (Salmo salar) fillets according to their color level.

PubMed

Misimi, E; Mathiassen, J R; Erikson, U

2007-01-01

Computer vision method was used to evaluate the color of Atlantic salmon (Salmo salar) fillets. Computer vision-based sorting of fillets according to their color was studied on 2 separate groups of salmon fillets. The images of fillets were captured using a digital camera of high resolution. Images of salmon fillets were then segmented in the regions of interest and analyzed in red, green, and blue (RGB) and CIE Lightness, redness, and yellowness (Lab) color spaces, and classified according to the Roche color card industrial standard. Comparisons of fillet color between visual evaluations were made by a panel of human inspectors, according to the Roche SalmoFan lineal standard, and the color scores generated from computer vision algorithm showed that there were no significant differences between the methods. Overall, computer vision can be used as a powerful tool to sort fillets by color in a fast and nondestructive manner. The low cost of implementing computer vision solutions creates the potential to replace manual labor in fish processing plants with automation.

Re-evaluating microglia expression profiles using RiboTag and cell isolation strategies.

PubMed

Haimon, Zhana; Volaski, Alon; Orthgiess, Johannes; Boura-Halfon, Sigalit; Varol, Diana; Shemer, Anat; Yona, Simon; Zuckerman, Binyamin; David, Eyal; Chappell-Maor, Louise; Bechmann, Ingo; Gericke, Martin; Ulitsky, Igor; Jung, Steffen

2018-06-01

Transcriptome profiling is widely used to infer functional states of specific cell types, as well as their responses to stimuli, to define contributions to physiology and pathophysiology. Focusing on microglia, the brain's macrophages, we report here a side-by-side comparison of classical cell-sorting-based transcriptome sequencing and the 'RiboTag' method, which avoids cell retrieval from tissue context and yields translatome sequencing information. Conventional whole-cell microglial transcriptomes were found to be significantly tainted by artifacts introduced by tissue dissociation, cargo contamination and transcripts sequestered from ribosomes. Conversely, our data highlight the added value of RiboTag profiling for assessing the lineage accuracy of Cre recombinase expression in transgenic mice. Collectively, this study indicates method-based biases, reveals observer effects and establishes RiboTag-based translatome profiling as a valuable complement to standard sorting-based profiling strategies.

Evaluation of motility, membrane status and DNA integrity of frozen-thawed bottlenose dolphin (Tursiops truncatus) spermatozoa after sex-sorting and recryopreservation.

PubMed

Montano, G A; Kraemer, D C; Love, C C; Robeck, T R; O'Brien, J K

2012-06-01

Artificial insemination (AI) with sex-sorted frozen-thawed spermatozoa has led to enhanced management of ex situ bottlenose dolphin populations. Extended distance of animals from the sorting facility can be overcome by the use of frozen-thawed, sorted and recryopreserved spermatozoa. Although one bottlenose dolphin calf had been born using sexed frozen-thawed spermatozoa derived from frozen semen, a critical evaluation of in vitro sperm quality is needed to justify the routine use of such samples in AI programs. Sperm motility parameters and plasma membrane integrity were influenced by stage of the sex-sorting process, sperm type (non-sorted and sorted) and freezing method (straw and directional) (P<0.05). After recryopreservation, sorted spermatozoa frozen with the directional freezing method maintained higher (P<0.05) motility parameters over a 24-h incubation period compared to spermatozoa frozen using straws. Quality of sperm DNA of non-sorted spermatozoa, as assessed by the sperm chromatin structure assay (SCSA), was high and remained unchanged throughout freeze-thawing and incubation processes. Though a possible interaction between Hoechst 33342 and the SCSA-derived acridine orange was observed in stained and sorted samples, the proportion of sex-sorted, recryopreserved spermatozoa exhibiting denatured DNA was low (6.6±4.1%) at 6 h after the second thawing step and remained unchanged (P>0.05) at 24 h. The viability of sorted spermatozoa was higher (P<0.05) than that of non-sorted spermatozoa across all time points after recryopreservation. Collective results indicate that bottlenose dolphin spermatozoa undergoing cryopreservation, sorting and recryopreservation are of adequate quality for use in AI.

Vision and dual IMU integrated attitude measurement system

NASA Astrophysics Data System (ADS)

Guo, Xiaoting; Sun, Changku; Wang, Peng; Lu, Huang

2018-01-01

To determination relative attitude between two space objects on a rocking base, an integrated system based on vision and dual IMU (inertial determination unit) is built up. The determination system fuses the attitude information of vision with the angular determinations of dual IMU by extended Kalman filter (EKF) to obtain the relative attitude. One IMU (master) is attached to the measured motion object and the other (slave) to the rocking base. As the determination output of inertial sensor is relative to inertial frame, thus angular rate of the master IMU includes not only motion of the measured object relative to inertial frame but also the rocking base relative to inertial frame, where the latter can be seen as redundant harmful movement information for relative attitude determination between the measured object and the rocking base. The slave IMU here assists to remove the motion information of rocking base relative to inertial frame from the master IMU. The proposed integrated attitude determination system is tested on practical experimental platform. And experiment results with superior precision and reliability show the feasibility and effectiveness of the proposed attitude determination system.

A mathematical modeling approach to resource allocation for railroad-highway crossing safety upgrades.

PubMed

Konur, Dinçer; Golias, Mihalis M; Darks, Brandon

2013-03-01

State Departments of Transportation (S-DOT's) periodically allocate budget for safety upgrades at railroad-highway crossings. Efficient resource allocation is crucial for reducing accidents at railroad-highway crossings and increasing railroad as well as highway transportation safety. While a specific method is not restricted to S-DOT's, sorting type of procedures are recommended by the Federal Railroad Administration (FRA), United States Department of Transportation for the resource allocation problem. In this study, a generic mathematical model is proposed for the resource allocation problem for railroad-highway crossing safety upgrades. The proposed approach is compared to sorting based methods for safety upgrades of public at-grade railroad-highway crossings in Tennessee. The comparison shows that the proposed mathematical modeling approach is more efficient than sorting methods in reducing accidents and severity. Copyright © 2012 Elsevier Ltd. All rights reserved.

The research of breaking rock with liquid-solid two-phase jet flow

NASA Astrophysics Data System (ADS)

Cheng, X. Z.; Ren, F. S.; Fang, T. C.

2018-03-01

Abstracts. Particle impact drilling is an efficient way of breaking rock, which is mainly used in deep drilling and ultra-deep drilling. The differential equation was established based on the theory of Hertz and Newton’s second law, through the analysis of particle impact rock, the depth of particles into the rock was obtained. The mathematical model was established based on the effect of water impact crack. The research results show when water jet speed is more than 40 m/s, rock stability coefficient is more than 1.0, the rock fracture appear. Through the experimental research of particle impact drilling facilities, analysis of cuttings and the crack size which was analyzed through Scanning electron microscope consistent with the theoretical calculation, the validity of the model was verified.

Subsurface Rock Physical Properties by Downhole Loggings - Case Studies of Continental Deep Drilling in Kanto Distinct, Japan

NASA Astrophysics Data System (ADS)

Omura, K.

2014-12-01

In recent years, many examples of physical logging have been carried out in deep boreholes. The loggings are direct in-situ measurements of rock physical properties under the ground. They provide significant basic data for the geological, geophysical and geotechnical investigations, e.g., tectonic history, seismic wave propagation, and ground motion prediction. Since about 1980's, Natl. Res. Inst. for Earth Sci. and Disast. Prev. (NIED) dug deep boreholes (from 200m to 3000m depth) in sedimentary basin of Kanto distinct, Japan, for purposes of installing seismographs and hydrological instruments, and in-situ stress and pore pressure measurements. At that time, downhole physical loggings were conducted in the boreholes: spontaneous potential, electrical resistance, elastic wave velocity, formation density, neutron porosity, total gamma ray, caliper, temperature loggings. In many cases, digital data values were provided every 2m or 1m or 0.1m. In other cases, we read printed graphs of logging plots and got digital data values. Data from about 30 boreholes are compiled. Especially, particular change of logging data at the depth of an interface between a shallow part (soft sedimentary rock) and a base rock (equivalent to hard pre-Neogene rock) is examined. In this presentation, the correlations among physical properties of rock (especially, formation density, elastic wave velocity and electrical resistance) are introduced and the relation to the lithology is discussed. Formation density, elastic wave velocity and electric resistance data indicate the data are divide in two groups that are higher or lower than 2.5g/cm3: the one correspond to a shallow part and the other correspond to a base rock part. In each group, the elastic wave velocity and electric resistance increase with increase of formation density. However the rates of increases in the shallow part are smaller than in the base rock part. The shallow part has lower degree of solidification and higher porosity than that in the base rock part. It appears differences in the degree of solidification and/or porosity are related to differences in the increasing rates. The present data show that the physical logging data are effective information to explore where the base rock is and what properties of the base rock are different from those in the shallow part.

77 FR 45599 - CED Rock Springs, Inc.; Supplemental Notice That Revised Market-Based Rate Tariff Filing Includes...

Federal Register 2010, 2011, 2012, 2013, 2014

2012-08-01

... DEPARTMENT OF ENERGY Federal Energy Regulatory Commission [Docket Nos. ER02-2546-000; ER02-2546-001] CED Rock Springs, Inc.; Supplemental Notice That Revised Market- Based Rate Tariff Filing...-referenced proceeding of CED Rock Springs, Inc.'s tariff revision filing, noting that such filing includes a...

Exposure to airborne fungi during sorting of recyclable plastics in waste treatment facilities.

PubMed

Černá, Kristýna; Wittlingerová, Zdeňka; Zimová, Magdaléna; Janovský, Zdeněk

2017-02-28

In working environment of waste treatment facilities, employees are exposed to high concentrations of airborne microorganisms. Fungi constitute an essential part of them. This study aims at evaluating the diurnal variation in concentrations and species composition of the fungal contamination in 2 plastic waste sorting facilities in different seasons. Air samples from the 2 sorting facilities were collected through the membrane filters method on 4 different types of cultivation media. Isolated fungi were classified to genera or species by using a light microscopy. Overall, the highest concentrations of airborne fungi were recorded in summer (9.1×10³-9.0×10⁵ colony-forming units (CFU)/m₃), while the lowest ones in winter (2.7×10³-2.9×10⁵ CFU/m³). The concentration increased from the beginning of the work shift and reached a plateau after 6-7 h of the sorting. The most frequently isolated airborne fungi were those of the genera Penicillium and Aspergillus. The turnover of fungal species between seasons was relatively high as well as changes in the number of detected species, but potentially toxigenic and allergenic fungi were detected in both facilities during all seasons. Generally, high concentrations of airborne fungi were detected in the working environment of plastic waste sorting facilities, which raises the question of health risk taken by the employees. Based on our results, the use of protective equipment by employees is recommended and preventive measures should be introduced into the working environment of waste sorting facilities to reduce health risk for employees. Med Pr 2017;68(1):1-9. This work is available in Open Access model and licensed under a CC BY-NC 3.0 PL license.

Fast and automatic thermographic material identification for the recycling process

NASA Astrophysics Data System (ADS)

Haferkamp, Heinz; Burmester, Ingo

1998-03-01

Within the framework of the future closed loop recycling process the automatic and economical sorting of plastics is a decisive element. The at the present time available identification and sorting systems are not yet suitable for the sorting of technical plastics since essential demands, as the realization of high recognition reliability and identification rates considering the variety of technical plastics, can not be guaranteed. Therefore the Laser Zentrum Hannover e.V. in cooperation with the Hoerotron GmbH and the Preussag Noell GmbH has carried out investigations on a rapid thermographic and laser-supported material- identification-system for automatic material-sorting- systems. The automatic identification of different engineering plastics coming from electronic or automotive waste is possible. Identification rates up to 10 parts per second are allowed by the effort from fast IR line scanners. The procedure is based on the following principle: within a few milliseconds a spot on the relevant sample is heated by a CO2 laser. The samples different and specific chemical and physical material properties cause different temperature distributions on their surfaces that are measured by a fast IR-linescan system. This 'thermal impulse response' has to be analyzed by means of a computer system. Investigations have shown that it is possible to analyze more than 18 different sorts of plastics at a frequency of 10 Hz. Crucial for the development of such a system is the rapid processing of imaging data, the minimization of interferences caused by oscillating samples geometries, and a wide range of possible additives in plastics in question. One possible application area is sorting of plastics coming from car- and electronic waste recycling.

Reduction of Aflatoxins in Apricot Kernels by Electronic and Manual Color Sorting.

PubMed

Zivoli, Rosanna; Gambacorta, Lucia; Piemontese, Luca; Solfrizzo, Michele

2016-01-19

The efficacy of color sorting on reducing aflatoxin levels in shelled apricot kernels was assessed. Naturally-contaminated kernels were submitted to an electronic optical sorter or blanched, peeled, and manually sorted to visually identify and sort discolored kernels (dark and spotted) from healthy ones. The samples obtained from the two sorting approaches were ground, homogenized, and analysed by HPLC-FLD for their aflatoxin content. A mass balance approach was used to measure the distribution of aflatoxins in the collected fractions. Aflatoxin B₁ and B₂ were identified and quantitated in all collected fractions at levels ranging from 1.7 to 22,451.5 µg/kg of AFB₁ + AFB₂, whereas AFG₁ and AFG₂ were not detected. Excellent results were obtained by manual sorting of peeled kernels since the removal of discolored kernels (2.6%-19.9% of total peeled kernels) removed 97.3%-99.5% of total aflatoxins. The combination of peeling and visual/manual separation of discolored kernels is a feasible strategy to remove 97%-99% of aflatoxins accumulated in naturally-contaminated samples. Electronic optical sorter gave highly variable results since the amount of AFB₁ + AFB₂ measured in rejected fractions (15%-18% of total kernels) ranged from 13% to 59% of total aflatoxins. An improved immunoaffinity-based HPLC-FLD method having low limits of detection for the four aflatoxins (0.01-0.05 µg/kg) was developed and used to monitor the occurrence of aflatoxins in 47 commercial products containing apricot kernels and/or almonds commercialized in Italy. Low aflatoxin levels were found in 38% of the tested samples and ranged from 0.06 to 1.50 μg/kg for AFB₁ and from 0.06 to 1.79 μg/kg for total aflatoxins.

Sorting cells of the microalga Chlorococcum littorale with increased triacylglycerol productivity.

PubMed

Cabanelas, Iago Teles Dominguez; van der Zwart, Mathijs; Kleinegris, Dorinde M M; Wijffels, René H; Barbosa, Maria J

2016-01-01

Despite extensive research in the last decades, microalgae are still only economically feasible for high valued markets. Strain improvement is a strategy to increase productivities, hence reducing costs. In this work, we focus on microalgae selection: taking advantage of the natural biological variability of species to select variations based on desired characteristics. We focused on triacylglycerol (TAG), which have applications ranging from biodiesel to high-value omega-3 fatty-acids. Hence, we demonstrated a strategy to sort microalgae cells with increased TAG productivity. 1. We successfully identified sub-populations of cells with increased TAG productivity using Fluorescence assisted cell sorting (FACS). 2. We sequentially sorted cells after repeated cycles of N-starvation, resulting in five sorted populations (S1-S5). 3. The comparison between sorted and original populations showed that S5 had the highest TAG productivity [0.34 against 0.18 g l(-1) day(-1) (original), continuous light]. 4. Original and S5 were compared in lab-scale reactors under simulated summer conditions confirming the increased TAG productivity of S5 (0.4 against 0.2 g l(-1) day(-1)). Biomass composition analyses showed that S5 produced more biomass under N-starvation because of an increase only in TAG content and, flow cytometry showed that our selection removed cells with lower efficiency in producing TAGs. All combined, our results present a successful strategy to improve the TAG productivity of Chlorococcum littorale, without resourcing to genetic manipulation or random mutagenesis. Additionally, the improved TAG productivity of S5 was confirmed under simulated summer conditions, highlighting the industrial potential of S5 for microalgal TAG production.

Consensus-Based Sorting of Neuronal Spike Waveforms

PubMed Central

Fournier, Julien; Mueller, Christian M.; Shein-Idelson, Mark; Hemberger, Mike

2016-01-01

Optimizing spike-sorting algorithms is difficult because sorted clusters can rarely be checked against independently obtained “ground truth” data. In most spike-sorting algorithms in use today, the optimality of a clustering solution is assessed relative to some assumption on the distribution of the spike shapes associated with a particular single unit (e.g., Gaussianity) and by visual inspection of the clustering solution followed by manual validation. When the spatiotemporal waveforms of spikes from different cells overlap, the decision as to whether two spikes should be assigned to the same source can be quite subjective, if it is not based on reliable quantitative measures. We propose a new approach, whereby spike clusters are identified from the most consensual partition across an ensemble of clustering solutions. Using the variability of the clustering solutions across successive iterations of the same clustering algorithm (template matching based on K-means clusters), we estimate the probability of spikes being clustered together and identify groups of spikes that are not statistically distinguishable from one another. Thus, we identify spikes that are most likely to be clustered together and therefore correspond to consistent spike clusters. This method has the potential advantage that it does not rely on any model of the spike shapes. It also provides estimates of the proportion of misclassified spikes for each of the identified clusters. We tested our algorithm on several datasets for which there exists a ground truth (simultaneous intracellular data), and show that it performs close to the optimum reached by a support vector machine trained on the ground truth. We also show that the estimated rate of misclassification matches the proportion of misclassified spikes measured from the ground truth data. PMID:27536990

Programmed optoelectronic time-pulse coded relational processor as base element for sorting neural networks

NASA Astrophysics Data System (ADS)

Krasilenko, Vladimir G.; Bardachenko, Vitaliy F.; Nikolsky, Alexander I.; Lazarev, Alexander A.

2007-04-01

In the paper we show that the biologically motivated conception of the use of time-pulse encoding gives the row of advantages (single methodological basis, universality, simplicity of tuning, training and programming et al) at creation and designing of sensor systems with parallel input-output and processing, 2D-structures of hybrid and neuro-fuzzy neurocomputers of next generations. We show principles of construction of programmable relational optoelectronic time-pulse coded processors, continuous logic, order logic and temporal waves processes, that lie in basis of the creation. We consider structure that executes extraction of analog signal of the set grade (order), sorting of analog and time-pulse coded variables. We offer optoelectronic realization of such base relational elements of order logic, which consists of time-pulse coded phototransformers (pulse-width and pulse-phase modulators) with direct and complementary outputs, sorting network on logical elements and programmable commutations blocks. We make estimations of basic technical parameters of such base devices and processors on their basis by simulation and experimental research: power of optical input signals - 0.200-20 μW, processing time - microseconds, supply voltage - 1.5-10 V, consumption power - hundreds of microwatts per element, extended functional possibilities, training possibilities. We discuss some aspects of possible rules and principles of training and programmable tuning on the required function, relational operation and realization of hardware blocks for modifications of such processors. We show as on the basis of such quasiuniversal hardware simple block and flexible programmable tuning it is possible to create sorting machines, neural networks and hybrid data-processing systems with the untraditional numerical systems and pictures operands.

Consensus-Based Sorting of Neuronal Spike Waveforms.

PubMed

Fournier, Julien; Mueller, Christian M; Shein-Idelson, Mark; Hemberger, Mike; Laurent, Gilles

2016-01-01

Optimizing spike-sorting algorithms is difficult because sorted clusters can rarely be checked against independently obtained "ground truth" data. In most spike-sorting algorithms in use today, the optimality of a clustering solution is assessed relative to some assumption on the distribution of the spike shapes associated with a particular single unit (e.g., Gaussianity) and by visual inspection of the clustering solution followed by manual validation. When the spatiotemporal waveforms of spikes from different cells overlap, the decision as to whether two spikes should be assigned to the same source can be quite subjective, if it is not based on reliable quantitative measures. We propose a new approach, whereby spike clusters are identified from the most consensual partition across an ensemble of clustering solutions. Using the variability of the clustering solutions across successive iterations of the same clustering algorithm (template matching based on K-means clusters), we estimate the probability of spikes being clustered together and identify groups of spikes that are not statistically distinguishable from one another. Thus, we identify spikes that are most likely to be clustered together and therefore correspond to consistent spike clusters. This method has the potential advantage that it does not rely on any model of the spike shapes. It also provides estimates of the proportion of misclassified spikes for each of the identified clusters. We tested our algorithm on several datasets for which there exists a ground truth (simultaneous intracellular data), and show that it performs close to the optimum reached by a support vector machine trained on the ground truth. We also show that the estimated rate of misclassification matches the proportion of misclassified spikes measured from the ground truth data.

A Quality Sorting of Fruit Using a New Automatic Image Processing Method

NASA Astrophysics Data System (ADS)

Amenomori, Michihiro; Yokomizu, Nobuyuki

This paper presents an innovative approach for quality sorting of objects such as apples sorting in an agricultural factory, using an image processing algorithm. The objective of our approach are; firstly to sort the objects by their colors precisely; secondly to detect any irregularity of the colors surrounding the apples efficiently. An experiment has been conducted and the results have been obtained and compared with that has been preformed by human sorting process and by color sensor sorting devices. The results demonstrate that our approach is capable to sort the objects rapidly and the percentage of classification valid rate was 100 %.

An Integrated In Silico Method to Discover Novel Rock1 Inhibitors: Multi- Complex-Based Pharmacophore, Molecular Dynamics Simulation and Hybrid Protocol Virtual Screening.

PubMed

Chen, Haining; Li, Sijia; Hu, Yajiao; Chen, Guo; Jiang, Qinglin; Tong, Rongsheng; Zang, Zhihe; Cai, Lulu

2016-01-01

Rho-associated, coiled-coil containing protein kinase 1 (ROCK1) is an important regulator of focal adhesion, actomyosin contraction and cell motility. In this manuscript, a combination of the multi-complex-based pharmacophore (MCBP), molecular dynamics simulation and a hybrid protocol of a virtual screening method, comprised of multipharmacophore- based virtual screening (PBVS) and ensemble docking-based virtual screening (DBVS) methods were used for retrieving novel ROCK1 inhibitors from the natural products database embedded in the ZINC database. Ten hit compounds were selected from the hit compounds, and five compounds were tested experimentally. Thus, these results may provide valuable information for further discovery of more novel ROCK1 inhibitors.

Rock Finding

ERIC Educational Resources Information Center

Rommel-Esham, Katie; Constable, Susan D.

2006-01-01

In this article, the authors discuss a literature-based activity that helps students discover the importance of making detailed observations. In an inspiring children's classic book, "Everybody Needs a Rock" by Byrd Baylor (1974), the author invites readers to go "rock finding," laying out 10 rules for finding a "perfect" rock. In this way, the…

Alternative Perspectives on Risk: Individual Differences in Problem Structuring

NASA Technical Reports Server (NTRS)

Orasanu, Judith; Fischer, Ute; Connors, Mary M. (Technical Monitor)

1997-01-01

Team decision making involves contributions of multiple players toward a common goal. While much has been written about the importance of developing shared mental models in order for teams to work together effectively, little has been done to determine the value of alternative perspectives on problem solving and decision making. Early studies of expertise contrasted experts with novices and noted that the two groups differ in the way they structure problems and in their selection of information as salient. Little attention has been given to differences among experts who differ in their specializations. A series of experiments was conducted to determine: (1) what dimensions of flight-related problem situations pilots judge to be most important when making flight-relevant decisions; and (2) whether pilots in different crew positions differ in the way they interpret problems relating to flight decisions. A sorting task was used to identify underlying dimensions judged as salient to individual pilots. Captains, first officers, and flight engineers from two major carriers participated in the study. Twenty-two flight scenarios were developed based on ASRS reports. Pilots were required to make judgments about how they would respond in each case and to sort the scenarios on the basis of similarity of decision factors. They were also asked to provide a verbal label that described each of their sorted categories. A second study required a different group of pilots (also captains, first officers and flight engineers) to sort on predetermined bases.

In-Line Sorting of Harumanis Mango Based on External Quality Using Visible Imaging

PubMed Central

Ibrahim, Mohd Firdaus; Ahmad Sa’ad, Fathinul Syahir; Zakaria, Ammar; Md Shakaff, Ali Yeon

2016-01-01

The conventional method of grading Harumanis mango is time-consuming, costly and affected by human bias. In this research, an in-line system was developed to classify Harumanis mango using computer vision. The system was able to identify the irregularity of mango shape and its estimated mass. A group of images of mangoes of different size and shape was used as database set. Some important features such as length, height, centroid and parameter were extracted from each image. Fourier descriptor and size-shape parameters were used to describe the mango shape while the disk method was used to estimate the mass of the mango. Four features have been selected by stepwise discriminant analysis which was effective in sorting regular and misshapen mango. The volume from water displacement method was compared with the volume estimated by image processing using paired t-test and Bland-Altman method. The result between both measurements was not significantly different (P > 0.05). The average correct classification for shape classification was 98% for a training set composed of 180 mangoes. The data was validated with another testing set consist of 140 mangoes which have the success rate of 92%. The same set was used for evaluating the performance of mass estimation. The average success rate of the classification for grading based on its mass was 94%. The results indicate that the in-line sorting system using machine vision has a great potential in automatic fruit sorting according to its shape and mass. PMID:27801799

The Lexical Stroop Sort (LSS) picture-word task: a computerized task for assessing the relationship between language and executive functioning in school-aged children.

PubMed

Wilbourn, Makeba Parramore; Kurtz, Laura E; Kalia, Vrinda

2012-03-01

The relationship between language development and executive function (EF) in children is not well understood. The Lexical Stroop Sort (LSS) task is a computerized EF task created for the purpose of examining the relationship between school-aged children's oral language development and EF. To validate this new measure, a diverse sample of school-aged children completed standardized oral language assessments, the LSS task, and the widely used Dimensional Change Card Sort (DCCS; Zelazo, 2006) task. Both EF tasks require children to sort stimuli into categories based on predetermined rules. While the DCCS largely relies on visual stimuli, the LSS employs children's phonological loop to access their semantic knowledge base. Accuracy and reaction times were recorded for both tasks. Children's scores on the LSS task were correlated with their scores on the DCCS task, and a similar pattern of relationships emerged between children's vocabulary and the two EF tasks, thus providing convergent validity for the LSS. However, children's phonological awareness was associated with their scores on the LSS, but not with those on the DCCS. In addition, a mediation model was used to elucidate the predictive relationship between phonological awareness and children's performance on the LSS task, with children's vocabulary fully mediating this relationship. The use of this newly created and validated LSS task with different populations, such as preschoolers and bilinguals, is also discussed.

In-Line Sorting of Harumanis Mango Based on External Quality Using Visible Imaging.

PubMed

Ibrahim, Mohd Firdaus; Ahmad Sa'ad, Fathinul Syahir; Zakaria, Ammar; Md Shakaff, Ali Yeon

2016-10-27

The conventional method of grading Harumanis mango is time-consuming, costly and affected by human bias. In this research, an in-line system was developed to classify Harumanis mango using computer vision. The system was able to identify the irregularity of mango shape and its estimated mass. A group of images of mangoes of different size and shape was used as database set. Some important features such as length, height, centroid and parameter were extracted from each image. Fourier descriptor and size-shape parameters were used to describe the mango shape while the disk method was used to estimate the mass of the mango. Four features have been selected by stepwise discriminant analysis which was effective in sorting regular and misshapen mango. The volume from water displacement method was compared with the volume estimated by image processing using paired t -test and Bland-Altman method. The result between both measurements was not significantly different (P > 0.05). The average correct classification for shape classification was 98% for a training set composed of 180 mangoes. The data was validated with another testing set consist of 140 mangoes which have the success rate of 92%. The same set was used for evaluating the performance of mass estimation. The average success rate of the classification for grading based on its mass was 94%. The results indicate that the in-line sorting system using machine vision has a great potential in automatic fruit sorting according to its shape and mass.

Spectral Variability among Rocks in Visible and Near Infrared Multispectral Pancam Data Collected at Gusev Crater: Examinations using Spectral Mixture Analysis and Related Techniques

NASA Technical Reports Server (NTRS)

Farrand, W. H.; Bell, J. F., III; Johnson, J. R.; Squyres, S. W.; Soderblom, J.; Ming, D. W.

2006-01-01

Visible and Near Infrared (VNIR) multispectral observations of rocks made by the Mars Exploration Rover Spirit s Panoramic camera (Pancam) have been analysed using a spectral mixture analysis (SMA) methodology. Scenes have been examined from the Gusev crater plains into the Columbia Hills. Most scenes on the plains and in the Columbia Hills could be modeled as three endmember mixtures of a bright material, rock, and shade. Scenes of rocks disturbed by the rover s Rock Abrasion Tool (RAT) required additional endmembers. In the Columbia Hills there were a number of scenes in which additional rock endmembers were required. The SMA methodology identified relatively dust-free areas on undisturbed rock surfaces, as well as spectrally unique areas on RAT abraded rocks. Spectral parameters from these areas were examined and six spectral classes were identified. These classes are named after a type rock or area and are: Adirondack, Lower West Spur, Clovis, Wishstone, Peace, and Watchtower. These classes are discriminable based, primarily, on near-infrared (NIR) spectral parameters. Clovis and Watchtower class rocks appear more oxidized than Wishstone class rocks and Adirondack basalts based on their having higher 535 nm band depths. Comparison of the spectral parameters of these Gusev crater rocks to parameters of glass-dominated basaltic tuffs indicates correspondence between measurements of Clovis and Watchtower classes, but divergence for the Wishstone class rocks which appear to have a higher fraction of crystalline ferrous iron bearing phases. Despite a high sulfur content, the rock Peace has NIR properties resembling plains basalts.

Sorting of large-diameter semiconducting carbon nanotube and printed flexible driving circuit for organic light emitting diode (OLED)

NASA Astrophysics Data System (ADS)

Xu, Wenya; Zhao, Jianwen; Qian, Long; Han, Xianying; Wu, Liangzhuan; Wu, Weichen; Song, Minshun; Zhou, Lu; Su, Wenming; Wang, Chao; Nie, Shuhong; Cui, Zheng

2014-01-01

A novel approach was developed to sort a large-diameter semiconducting single-walled carbon nanotube (sc-SWCNT) based on copolyfluorene derivative with high yield. High purity sc-SWCNTs inks were obtained by wrapping arc-discharge SWCNTs with poly[2,7-(9,9-dioctylfluorene)-alt-4,7-bis(thiophen-2-yl)benzo-2,1,3-thiadiazole] (PFO-DBT) aided by sonication and centrifugation in tetrahydrofuran (THF). The sorted sc-SWCNT inks and nanosilver inks were used to print top-gated thin-film transistors (TFTs) on flexible substrates with an aerosol jet printer. The printed TFTs demonstrated low operating voltage, small hysteresis, high on-state current (up to 10-3 A), high mobility and on-off ratio. An organic light emitting diode (OLED) driving circuit was constructed based on the printed TFTs, which exhibited high on-off ratio up to 104 and output current up to 3.5 × 10-4 A at Vscan = -4.5 V and Vdd = 0.8 V. A single OLED was switched on with the driving circuit, showing the potential as backplanes for active matrix OLED applications.A novel approach was developed to sort a large-diameter semiconducting single-walled carbon nanotube (sc-SWCNT) based on copolyfluorene derivative with high yield. High purity sc-SWCNTs inks were obtained by wrapping arc-discharge SWCNTs with poly[2,7-(9,9-dioctylfluorene)-alt-4,7-bis(thiophen-2-yl)benzo-2,1,3-thiadiazole] (PFO-DBT) aided by sonication and centrifugation in tetrahydrofuran (THF). The sorted sc-SWCNT inks and nanosilver inks were used to print top-gated thin-film transistors (TFTs) on flexible substrates with an aerosol jet printer. The printed TFTs demonstrated low operating voltage, small hysteresis, high on-state current (up to 10-3 A), high mobility and on-off ratio. An organic light emitting diode (OLED) driving circuit was constructed based on the printed TFTs, which exhibited high on-off ratio up to 104 and output current up to 3.5 × 10-4 A at Vscan = -4.5 V and Vdd = 0.8 V. A single OLED was switched on with the driving circuit, showing the potential as backplanes for active matrix OLED applications. Electronic supplementary information (ESI) available. See DOI: 10.1039/c3nr04870e

Performance evaluation of firefly algorithm with variation in sorting for non-linear benchmark problems

NASA Astrophysics Data System (ADS)

Umbarkar, A. J.; Balande, U. T.; Seth, P. D.

2017-06-01

The field of nature inspired computing and optimization techniques have evolved to solve difficult optimization problems in diverse fields of engineering, science and technology. The firefly attraction process is mimicked in the algorithm for solving optimization problems. In Firefly Algorithm (FA) sorting of fireflies is done by using sorting algorithm. The original FA is proposed with bubble sort for ranking the fireflies. In this paper, the quick sort replaces bubble sort to decrease the time complexity of FA. The dataset used is unconstrained benchmark functions from CEC 2005 [22]. The comparison of FA using bubble sort and FA using quick sort is performed with respect to best, worst, mean, standard deviation, number of comparisons and execution time. The experimental result shows that FA using quick sort requires less number of comparisons but requires more execution time. The increased number of fireflies helps to converge into optimal solution whereas by varying dimension for algorithm performed better at a lower dimension than higher dimension.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Krityakierne, Tipaluck; Akhtar, Taimoor; Shoemaker, Christine A.

This paper presents a parallel surrogate-based global optimization method for computationally expensive objective functions that is more effective for larger numbers of processors. To reach this goal, we integrated concepts from multi-objective optimization and tabu search into, single objective, surrogate optimization. Our proposed derivative-free algorithm, called SOP, uses non-dominated sorting of points for which the expensive function has been previously evaluated. The two objectives are the expensive function value of the point and the minimum distance of the point to previously evaluated points. Based on the results of non-dominated sorting, P points from the sorted fronts are selected as centersmore » from which many candidate points are generated by random perturbations. Based on surrogate approximation, the best candidate point is subsequently selected for expensive evaluation for each of the P centers, with simultaneous computation on P processors. Centers that previously did not generate good solutions are tabu with a given tenure. We show almost sure convergence of this algorithm under some conditions. The performance of SOP is compared with two RBF based methods. The test results show that SOP is an efficient method that can reduce time required to find a good near optimal solution. In a number of cases the efficiency of SOP is so good that SOP with 8 processors found an accurate answer in less wall-clock time than the other algorithms did with 32 processors.« less

Search for the Origin of Hematite at Meridiani Planum and Gusev Crater

NASA Astrophysics Data System (ADS)

Dreibus, G.; Brückner, J.; Jagoutz, E.

2005-05-01

The landscape in Meridiani Planum encountered by the Rover Opportunity is different to all previous Mars landing sites. While those locations look like typical unsorted alluvials, Meridiani Planum consists of sorted sands with aeolian features like small dunes and desert pavements in places. Chemical compositions of soils and rocks at Gusev crater and Meridiani Planum were measured by the Alpha Proton X-Ray Spectrometer (APXS) [1, 2]. At Meridiani Planum all soils and outcrops have a higher mean Fe/Si ratio of 0.75 compared to rocks and soils in Gusev crater with a mean Fe/Si of 0.57. The enrichment of Fe results from an admixture of hematite (Fe2O3) as determined in-situ by the Mössbauer spectrometer (MB) [3]. The formation of hematite is an indicator for aqueous activities under oxidizing conditions. The highest portion of this mineral was found in the spherical grains, also nicknamed `blueberries', which cover most place at the landing site. These spherules were also found in rock exposures in Eagle crater to about 2 % by volume and were interpreted as concretions that formed by precipitation from aqueous fluids inside sedimentary rocks [4]. At Gusev crater no hematite was observed until sol 90 except for layering on a rock. However, about three months later at the foot of the Columbia Hills the MB detected hematite in a rock, dubbed `Pot of Gold'. Our investigations of hematite bearing materials, measured by APXS, MB, and Microscopic Imager (MI) [5], provide an integrated view of different occurrences of hematite on the Martian surface. Ratios of Fe to Mn are compared with Fe concentrations for various soils and outcrops in Meridiani Planum and Gusev crater. Most samples cluster at a mean Fe/Mn ratio of about 50 and range in Fe from 12 to 17 wt. %. Exceptions are found for those Meridiani Planum soils that have very high Fe contents of about 26 wt. %, such as targets dubbed `JackRussell', `FredRipple', and `Berry Bowl full', all showing Fe/Mn ratios of about 110. Based on APXS measurements we cannot distinguish, whether spherules consist of pure hematite or carry a thin layer of hematite. All these high hematite bearing soils are top surface samples, while corresponding subsurface soil samples or soils disturbed by rover wheels have low hematite contents. The very high Fe/Mn ratios of three undisturbed samples together with very high hematite contents suggest the presence of a hematite-rich top layer irrespectively of shape and area coverage of spherules or fragments and could be interpreted as a surface coating similar to terrestrial surface coatings. In the hematite rich outcrops with the same Fe/Mn ratio as found for the soil samples the formation of the main portion of fine dispersed hematite must be an isochemical re-crystallization process under strongly oxidizing conditions. [1] Gellert, R. et al. (2004) Science, 305, 829-832. [2] Rieder, R. et al. (2004) Science, 306, 1746-1749. [3] Klingelhöfer, G. et al. (2004) Science, 306, 1740-1745. [4] Squyres, S, et al. (2004) Science, 306, 1698-1703. [5] Herkenhoff, K. E. et al. (2004) Science, 306, 1727-1730.

Enrichment and isolation of neurons from adult mouse brain for ex vivo analysis.

PubMed

Berl, Sabina; Karram, Khalad; Scheller, Anja; Jungblut, Melanie; Kirchhoff, Frank; Waisman, Ari

2017-05-01

Isolation of neurons from the adult mouse CNS is important in order to study their gene expression during development or the course of different diseases. Here we present two different methods for the enrichment or isolation of neurons from adult mouse CNS. These methods: are either based on flow cytometry sorting of eYFP expressing neurons, or by depletion of non-neuronal cells by sorting with magnetic-beads. Enrichment by FACS sorting of eYFP positive neurons results in a population of 62.4% NeuN positive living neurons. qPCR data shows a 3-5fold upregulation of neuronal markers. The isolation of neurons based on depletion of non-neuronal cells using the Miltenyi Neuron Isolation Kit, reaches a purity of up to 86.5%. qPCR data of these isolated neurons shows an increase in neuronal markers and an absence of glial markers, proving pure neuronal RNA isolation. Former data related to neuronal gene expression are mainly based on histology, which does not allow for high-throughput transcriptome analysis to examine differential gene expression. These protocols can be used to study cell type specific gene expression of neurons to unravel their function in the process of damage to the CNS. Copyright © 2017 Elsevier B.V. All rights reserved.

Performance evaluation of PCA-based spike sorting algorithms.

PubMed

Adamos, Dimitrios A; Kosmidis, Efstratios K; Theophilidis, George

2008-09-01

Deciphering the electrical activity of individual neurons from multi-unit noisy recordings is critical for understanding complex neural systems. A widely used spike sorting algorithm is being evaluated for single-electrode nerve trunk recordings. The algorithm is based on principal component analysis (PCA) for spike feature extraction. In the neuroscience literature it is generally assumed that the use of the first two or most commonly three principal components is sufficient. We estimate the optimum PCA-based feature space by evaluating the algorithm's performance on simulated series of action potentials. A number of modifications are made to the open source nev2lkit software to enable systematic investigation of the parameter space. We introduce a new metric to define clustering error considering over-clustering more favorable than under-clustering as proposed by experimentalists for our data. Both the program patch and the metric are available online. Correlated and white Gaussian noise processes are superimposed to account for biological and artificial jitter in the recordings. We report that the employment of more than three principal components is in general beneficial for all noise cases considered. Finally, we apply our results to experimental data and verify that the sorting process with four principal components is in agreement with a panel of electrophysiology experts.

NASA "Rocks" Problem-Based Learning

ERIC Educational Resources Information Center

Johnson, Carla J.

2004-01-01

A rock investigation set up as a problem-based learning mini-unit for the author's seventh grade integrated science students. To start this unit, she explains to students that NASA has sent us a container of rocks that they would like to have identified. It is up to the students to assume the role of geologists and come up with some way to…

Sedimentary laminations in the Isheyevo (CH/CBb) carbonaceous chondrite formed by gentle impact-plume sweep-up

NASA Astrophysics Data System (ADS)

Garvie, Laurence A. J.; Knauth, L. Paul; Morris, Melissa A.

2017-08-01

Prominent macroscopic sedimentary laminations, consisting of mm- to cm-thick alternating well-sorted but poorly mixed silicate and metal-rich layers cut by faults and downward penetrating load structures, are prevalent in the Isheyevo (CH/CBb) carbonaceous chondrite. The load structures give the up direction of this sedimentary rock that accumulated from in-falling metal- and silicate-rich grains under near vacuum conditions onto the surface of an accreting planetesimal. The Isheyevo meteorite is the end result of a combination of events and processes that we suggest was initiated by the glancing blow impact of two planetesimals. The smaller impactor was disrupted forming an impact plume downrange of the impact. The components within the plume were aerodynamically size sorted by the nebular gas and swept up by the impacted planetesimal before turbulent mixing within the plume could blur the effects of the sorting. This plume would have contained a range of materials including elementally zoned Fe-Ni metal grains that condensed in the plume to disrupted unaltered material from the crust of the impactor, such as the hydrated matrix lumps. The juxtaposition of hydrated matrix lumps, some of which have not been heated above 150 °C, together with components that formed above 1000 °C, is compelling evidence that they were swept up together. Sweep-up would have occurred as the rotating impactor moved through the plume producing layers of material: the Isheyevo sample thus represents material accumulated while that part of the rotating planetesimal moved into the plume. Vibrations from subsequent impacts helped to form the load structures and induced weak grading within the layers via kinetic sieving. Following sweep-up, the particles were compacted under low static temperatures as evidenced by the preservation of elementally zoned Fe-Ni metal grains with preserved martensite α2 cores, distinct metal-metal grain boundaries, and metal-deformation microstructures. This meteorite provides evidence of gentle layer-by-layer accretion in the early Solar System, and also extends the terrestrial sedimentary source-to-sink paradigm to a near vacuum environment where neither fluvial nor aeolian processes operate.

Rock slope design guide.

DOT National Transportation Integrated Search

2011-04-01

This Manual is intended to provide guidance for the design of rock cut slopes, rockfall catchment, and : rockfall controls. Recommendations presented in this manual are based on research presented in Shakoor : and Admassu (2010) entitled Rock Slop...

Rock Slope Design Criteria

DOT National Transportation Integrated Search

2010-06-01

Based on the stratigraphy and the type of slope stability problems, the flat lying, Paleozoic age, sedimentary : rocks of Ohio were divided into three design units: 1) competent rock design unit consisting of sandstones, limestones, : and siltstones ...

Learning cellular sorting pathways using protein interactions and sequence motifs.

PubMed

Lin, Tien-Ho; Bar-Joseph, Ziv; Murphy, Robert F

2011-11-01

Proper subcellular localization is critical for proteins to perform their roles in cellular functions. Proteins are transported by different cellular sorting pathways, some of which take a protein through several intermediate locations until reaching its final destination. The pathway a protein is transported through is determined by carrier proteins that bind to specific sequence motifs. In this article, we present a new method that integrates protein interaction and sequence motif data to model how proteins are sorted through these sorting pathways. We use a hidden Markov model (HMM) to represent protein sorting pathways. The model is able to determine intermediate sorting states and to assign carrier proteins and motifs to the sorting pathways. In simulation studies, we show that the method can accurately recover an underlying sorting model. Using data for yeast, we show that our model leads to accurate prediction of subcellular localization. We also show that the pathways learned by our model recover many known sorting pathways and correctly assign proteins to the path they utilize. The learned model identified new pathways and their putative carriers and motifs and these may represent novel protein sorting mechanisms. Supplementary results and software implementation are available from http://murphylab.web.cmu.edu/software/2010_RECOMB_pathways/.

Implementing the Rock Challenge: Teacher Perspectives on a Performing Arts Programme

ERIC Educational Resources Information Center

Jones, Mathew; Murphy, Simon; Salmon, Debra; Kimberlee, Richard; Orme, Judy

2004-01-01

The Rock Challenge is a school-based performing arts programme that aims to promote healthy lifestyles amongst secondary school students. This paper reports on teacher perspectives on the implementation of The Rock Challenge in nine English schools. This study highlights how performing arts programmes, such as The Rock Challenge, are unlikely to…

Finding of No Significant Impact: Military Family Housing Revitalization Project Nellis Air Force Base, Nevada

DTIC Science & Technology

2005-02-01

extent, plutonic rocks (all from the early Cenozoic Era). The sedimentary rocks are predominantly carbonates (limestone and dolomite), although there are...comprised of volcanic rocks, while the plutonic rocks also are exposed at a number of locations in the southern mountains (Longwell, et al., 1965

Rockbursting Potential of Kimberlite: A Case Study of Diavik Diamond Mine

NASA Astrophysics Data System (ADS)

Leveille, Paul; Sepehri, Mohammadali; Apel, Derek B.

2017-12-01

The research described in this paper provides information about the rockbursting potential of kimberlite. Kimberlite is a diamond-bearing rock found in deposits around the world including northern Canada. This paper outlines three methods for the prediction of rockbursts based on the properties of a rock. The methods include the: strain energy index, strain energy density, and rock brittleness. Kimberlite samples collected from Diavik, a diamond mine in northern Canada, were tested to define the rock's uniaxial compressive strength, tensile strength, and hysteresis loop. The samples were separated into sub-rock types based on their descriptions from the mine geologists. The results indicate that it is possible to produce rockbursts in kimberlite. It was also observed that the sub-rock types had a range of rockbursting properties. Some types of kimberlite exhibited little to no potential for producing bursts, while other types potentially could produce violent bursts. The diverse nature of kimberlite indicates that the rockbursting properties of the rock should not be generalized and are dependent on the sub-rock type being encountered.

Estimation of Confined Peak Strength of Crack-Damaged Rocks

NASA Astrophysics Data System (ADS)

Bahrani, Navid; Kaiser, Peter K.

2017-02-01

It is known that the unconfined compressive strength of rock decreases with increasing density of geological features such as micro-cracks, fractures, and veins both at the laboratory specimen and rock block scales. This article deals with the confined peak strength of laboratory-scale rock specimens containing grain-scale strength dominating features such as micro-cracks. A grain-based distinct element model, whereby the rock is simulated with grains that are allowed to deform and break, is used to investigate the influence of the density of cracks on the rock strength under unconfined and confined conditions. A grain-based specimen calibrated to the unconfined and confined strengths of intact and heat-treated Wombeyan marble is used to simulate rock specimens with varying crack densities. It is demonstrated how such cracks affect the peak strength, stress-strain curve and failure mode with increasing confinement. The results of numerical simulations in terms of unconfined and confined peak strengths are used to develop semi-empirical relations that relate the difference in strength between the intact and crack-damaged rocks to the confining pressure. It is shown how these relations can be used to estimate the confined peak strength of a rock with micro-cracks when the unconfined and confined strengths of the intact rock and the unconfined strength of the crack-damaged rock are known. This approach for estimating the confined strength of crack-damaged rock specimens, called strength degradation approach, is then verified by application to published laboratory triaxial test data.

How many neurons can we see with current spike sorting algorithms?

PubMed

Pedreira, Carlos; Martinez, Juan; Ison, Matias J; Quian Quiroga, Rodrigo

2012-10-15

Recent studies highlighted the disagreement between the typical number of neurons observed with extracellular recordings and the ones to be expected based on anatomical and physiological considerations. This disagreement has been mainly attributed to the presence of sparsely firing neurons. However, it is also possible that this is due to limitations of the spike sorting algorithms used to process the data. To address this issue, we used realistic simulations of extracellular recordings and found a relatively poor spike sorting performance for simulations containing a large number of neurons. In fact, the number of correctly identified neurons for single-channel recordings showed an asymptotic behavior saturating at about 8-10 units, when up to 20 units were present in the data. This performance was significantly poorer for neurons with low firing rates, as these units were twice more likely to be missed than the ones with high firing rates in simulations containing many neurons. These results uncover one of the main reasons for the relatively low number of neurons found in extracellular recording and also stress the importance of further developments of spike sorting algorithms. Copyright © 2012 Elsevier B.V. All rights reserved.

Pinched flow fractionation of microbubbles for ultrasound contrast agent enrichment

NASA Astrophysics Data System (ADS)

Versluis, Michel; Kok, Maarten; Segers, Tim

2014-11-01

An ultrasound contrast agent (UCA) suspension contains a wide size distribution of encapsulated microbubbles (typically 1-10 μm in diameter) that resonate to the driving ultrasound field by the intrinsic relationship between bubble size and ultrasound frequency. Medical transducers, however, operate in a narrow frequency range, which severely limits the number of bubbles that contribute to the echo signal. Thus, the sensitivity can be improved by narrowing down the size distribution of the bubble suspension. Here, we present a novel, low-cost, lab-on-a-chip method for the sorting of contrast microbubbles by size, based on a microfluidic separation technique known as pinched flow fractionation (PFF). We show by experimental and numerical investigation that the inclusion of particle rotation is essential for an accurate physical description of the sorting behavior of the larger bubbles. Successful sorting of a bubble suspension with a narrow size distribution (3.0 +/- 0.6 μm) has been achieved with a PFF microdevice. This sorting technique can be easily parallelized, and may lead to a significant improvement in the sensitivity of contrast-enhanced medical ultrasound. This work is supported by NanoNextNL, a micro and nanotechnology consortium of the Government of the Netherlands and 130 partners.

Birth of kids after artificial insemination with sex-sorted, frozen-thawed goat spermatozoa.

PubMed

Bathgate, R; Mace, N; Heasman, K; Evans, G; Maxwell, W M C; de Graaf, S P

2013-12-01

Successful sex-sorting of goat spermatozoa and subsequent birth of pre-sexed kids have yet to be reported. As such, a series of experiments were conducted to develop protocols for sperm-sorting (using a modified flow cytometer, MoFlo SX(®) ) and cryopreservation of goat spermatozoa. Saanen goat spermatozoa (n = 2 males) were (i) collected into Salamon's or Tris catch media post-sorting and (ii) frozen in Tris-citrate-glucose media supplemented with 5, 10 or 20% egg yolk in (iii) 0.25 ml pellets on dry ice or 0.25 ml straws in a controlled-rate freezer. Post-sort and post-thaw sperm quality were assessed by motility (CASA), viability and acrosome integrity (PI/FITC-PNA). Sex-sorted goat spermatozoa frozen in pellets displayed significantly higher post-thaw motility and viability than spermatozoa frozen in straws. Catch media and differing egg yolk concentration had no effect on the sperm parameters tested. The in vitro and in vivo fertility of sex-sorted goat spermatozoa produced with this optimum protocol were then tested by means of a heterologous ova binding assay and intrauterine artificial insemination of Saanen goat does, respectively. Sex-sorted goat spermatozoa bound to sheep ova zona pellucidae in similar numbers (p > 0.05) to non-sorted goat spermatozoa, non-sorted ram spermatozoa and sex-sorted ram spermatozoa. Following intrauterine artificial insemination with sex-sorted spermatozoa, 38% (5/13) of does kidded with 83% (3/5) of kids being of the expected sex. Does inseminated with non-sorted spermatozoa achieved a 50% (3/6) kidding rate and a sex ratio of 3 : 1 (F : M). This study demonstrates for the first time that goat spermatozoa can be sex-sorted by flow cytometry, successfully frozen and used to produce pre-sexed kids. © 2013 Blackwell Verlag GmbH.

NeoAnalysis: a Python-based toolbox for quick electrophysiological data processing and analysis.

PubMed

Zhang, Bo; Dai, Ji; Zhang, Tao

2017-11-13

In a typical electrophysiological experiment, especially one that includes studying animal behavior, the data collected normally contain spikes, local field potentials, behavioral responses and other associated data. In order to obtain informative results, the data must be analyzed simultaneously with the experimental settings. However, most open-source toolboxes currently available for data analysis were developed to handle only a portion of the data and did not take into account the sorting of experimental conditions. Additionally, these toolboxes require that the input data be in a specific format, which can be inconvenient to users. Therefore, the development of a highly integrated toolbox that can process multiple types of data regardless of input data format and perform basic analysis for general electrophysiological experiments is incredibly useful. Here, we report the development of a Python based open-source toolbox, referred to as NeoAnalysis, to be used for quick electrophysiological data processing and analysis. The toolbox can import data from different data acquisition systems regardless of their formats and automatically combine different types of data into a single file with a standardized format. In cases where additional spike sorting is needed, NeoAnalysis provides a module to perform efficient offline sorting with a user-friendly interface. Then, NeoAnalysis can perform regular analog signal processing, spike train, and local field potentials analysis, behavioral response (e.g. saccade) detection and extraction, with several options available for data plotting and statistics. Particularly, it can automatically generate sorted results without requiring users to manually sort data beforehand. In addition, NeoAnalysis can organize all of the relevant data into an informative table on a trial-by-trial basis for data visualization. Finally, NeoAnalysis supports analysis at the population level. With the multitude of general-purpose functions provided by NeoAnalysis, users can easily obtain publication-quality figures without writing complex codes. NeoAnalysis is a powerful and valuable toolbox for users doing electrophysiological experiments.

Developing a thermal characteristic index for lithology identification using thermal infrared remote sensing data

NASA Astrophysics Data System (ADS)

Wei, Jiali; Liu, Xiangnan; Ding, Chao; Liu, Meiling; Jin, Ming; Li, Dongdong

2017-01-01

In remote sensing petrology fields, studies have mainly concentrated on spectroscopy remote sensing research, and methods to identify minerals and rocks are mainly based on the analysis and enhancement of spectral features. Few studies have reported the application of thermodynamics for lithology identification. This paper aims to establish a thermal characteristic index (TCI) to explore rock thermal behavior responding to defined environmental systems. The study area is located in the northern Qinghai Province, China, on the northern edge of the Qinghai-Tibet Plateau, where mafic-ultramafic rock, quartz-rich rock, alkali granite rock and carbonate rock are well exposed; the pixel samples of these rocks and vegetation were obtained based on relevant indices and geological maps. The scatter plots of TCI indicate that mafic-ultramafic rock and quartz-rich rock can be well extracted from other surface objects when interference from vegetation is lower. On account of the complexity of environmental systems, three periods of TCI were used to construct a three-dimensional scatter plot, named the multi-temporal thermal feature space (MTTFS) model. Then, the Bayes discriminant analysis algorithm was applied to the MTTFS model to extract rocks quantitatively. The classification accuracy of mafic-ultramafic rock is more than 75% in both training data and test data, which suggests TCI can act as a sensitive indicator to distinguish rocks and the MTTFS model can accurately extract mafic-ultramafic rock from other surface objects. We deduce that the use of thermodynamics is promising in lithology identification when an effective index is constructed and an appropriated model is selected.

Geological mapping and analysis in determining resource recitivity limestone rocks in the village of Mersip and surrounding areas, district Limun, Sorolangun Regency, Jambi Province

NASA Astrophysics Data System (ADS)

Dona, Obie Mario; Ibrahim, Eddy; Susilo, Budhi Kuswan

2017-11-01

The research objective is to describe potential, to analyze the quality and quantity of limestone, and to know the limit distribution of rocks based on the value of resistivity, the pattern of distribution of rocks by drilling, the influence mineral growing on rock against resistivity values, the model deposition of limestone based on the value resistivity of rock and drilling, and the comparison between the interpretation resistivity values based on petrographic studies by drilling. Geologic Formations study area consists of assays consisting of altered sandstone, phyllite, slate, siltstone, grewake, and inset limestone. Local quartz sandstone, schist, genealogy, which is Member of Mersip Stylists Formation, consists of limestone that formed in shallow seas. Stylists Formation consists of slate, shale, siltstone and sandstone. This research methodology is quantitative using experimental observation by survey. This type of research methodology by its nature is descriptive analysis.

A theoretical derivation of the dilatancy equation for brittle rocks based on Maxwell model

NASA Astrophysics Data System (ADS)

Li, Jie; Huang, Houxu; Wang, Mingyang

2017-03-01

In this paper, the micro-cracks in the brittle rocks are assumed to be penny shaped and evenly distributed; the damage and dilatancy of the brittle rocks is attributed to the growth and expansion of numerous micro-cracks under the local tensile stress. A single crack's behaviour under the local tensile stress is generalized to all cracks based on the distributed damage mechanics. The relationship between the local tensile stress and the external loading is derived based on the Maxwell model. The damage factor corresponding to the external loading is represented using the p-alpha ( p- α) model. A dilatancy equation that can build up a link between the external loading and the rock dilatancy is established. A test of dilatancy of a brittle rock under triaxial compression is conducted; the comparison between experimental results and our theoretical results shows good consistency.

Effect of Particle Shape on Mechanical Behaviors of Rocks: A Numerical Study Using Clumped Particle Model

PubMed Central

Rong, Guan; Liu, Guang; Zhou, Chuang-bing

2013-01-01

Since rocks are aggregates of mineral particles, the effect of mineral microstructure on macroscopic mechanical behaviors of rocks is inneglectable. Rock samples of four different particle shapes are established in this study based on clumped particle model, and a sphericity index is used to quantify particle shape. Model parameters for simulation in PFC are obtained by triaxial compression test of quartz sandstone, and simulation of triaxial compression test is then conducted on four rock samples with different particle shapes. It is seen from the results that stress thresholds of rock samples such as crack initiation stress, crack damage stress, and peak stress decrease with the increasing of the sphericity index. The increase of sphericity leads to a drop of elastic modulus and a rise in Poisson ratio, while the decreasing sphericity usually results in the increase of cohesion and internal friction angle. Based on volume change of rock samples during simulation of triaxial compression test, variation of dilation angle with plastic strain is also studied. PMID:23997677

A new 3-D thin-skinned rock glacier model based on helicopter GPR results from the Swiss Alps

NASA Astrophysics Data System (ADS)

Merz, Kaspar; Green, Alan G.; Buchli, Thomas; Springman, Sarah M.; Maurer, Hansruedi

2015-06-01

Mountainous locations and steep rugged surfaces covered by boulders and other loose debris are the main reasons why rock glaciers are among the most challenging geological features to investigate using ground-based geophysical methods. Consequently, geophysical surveys of rock glaciers have only ever involved recording data along sparse lines. To address this issue, we acquired quasi-3-D ground-penetrating radar (GPR) data across a rock glacier in the Swiss Alps using a helicopter-mounted system. Our interpretation of the derived GPR images constrained by borehole information results in a novel "thin-skinned" rock glacier model that explains a concentration of deformation across a principal shear zone (décollement) and faults across which rock glacier lobes are juxtaposed. The new model may be applicable to many rock glaciers worldwide. We suggest that the helicopter GPR method may be useful for 3-D surveying numerous other difficult-to-access mountainous terrains.

Effect of particle shape on mechanical behaviors of rocks: a numerical study using clumped particle model.

PubMed

Rong, Guan; Liu, Guang; Hou, Di; Zhou, Chuang-Bing

2013-01-01

Since rocks are aggregates of mineral particles, the effect of mineral microstructure on macroscopic mechanical behaviors of rocks is inneglectable. Rock samples of four different particle shapes are established in this study based on clumped particle model, and a sphericity index is used to quantify particle shape. Model parameters for simulation in PFC are obtained by triaxial compression test of quartz sandstone, and simulation of triaxial compression test is then conducted on four rock samples with different particle shapes. It is seen from the results that stress thresholds of rock samples such as crack initiation stress, crack damage stress, and peak stress decrease with the increasing of the sphericity index. The increase of sphericity leads to a drop of elastic modulus and a rise in Poisson ratio, while the decreasing sphericity usually results in the increase of cohesion and internal friction angle. Based on volume change of rock samples during simulation of triaxial compression test, variation of dilation angle with plastic strain is also studied.

A model-based spike sorting algorithm for removing correlation artifacts in multi-neuron recordings.

PubMed

Pillow, Jonathan W; Shlens, Jonathon; Chichilnisky, E J; Simoncelli, Eero P

2013-01-01

We examine the problem of estimating the spike trains of multiple neurons from voltage traces recorded on one or more extracellular electrodes. Traditional spike-sorting methods rely on thresholding or clustering of recorded signals to identify spikes. While these methods can detect a large fraction of the spikes from a recording, they generally fail to identify synchronous or near-synchronous spikes: cases in which multiple spikes overlap. Here we investigate the geometry of failures in traditional sorting algorithms, and document the prevalence of such errors in multi-electrode recordings from primate retina. We then develop a method for multi-neuron spike sorting using a model that explicitly accounts for the superposition of spike waveforms. We model the recorded voltage traces as a linear combination of spike waveforms plus a stochastic background component of correlated Gaussian noise. Combining this measurement model with a Bernoulli prior over binary spike trains yields a posterior distribution for spikes given the recorded data. We introduce a greedy algorithm to maximize this posterior that we call "binary pursuit". The algorithm allows modest variability in spike waveforms and recovers spike times with higher precision than the voltage sampling rate. This method substantially corrects cross-correlation artifacts that arise with conventional methods, and substantially outperforms clustering methods on both real and simulated data. Finally, we develop diagnostic tools that can be used to assess errors in spike sorting in the absence of ground truth.

A Model-Based Spike Sorting Algorithm for Removing Correlation Artifacts in Multi-Neuron Recordings

PubMed Central

Chichilnisky, E. J.; Simoncelli, Eero P.

2013-01-01

We examine the problem of estimating the spike trains of multiple neurons from voltage traces recorded on one or more extracellular electrodes. Traditional spike-sorting methods rely on thresholding or clustering of recorded signals to identify spikes. While these methods can detect a large fraction of the spikes from a recording, they generally fail to identify synchronous or near-synchronous spikes: cases in which multiple spikes overlap. Here we investigate the geometry of failures in traditional sorting algorithms, and document the prevalence of such errors in multi-electrode recordings from primate retina. We then develop a method for multi-neuron spike sorting using a model that explicitly accounts for the superposition of spike waveforms. We model the recorded voltage traces as a linear combination of spike waveforms plus a stochastic background component of correlated Gaussian noise. Combining this measurement model with a Bernoulli prior over binary spike trains yields a posterior distribution for spikes given the recorded data. We introduce a greedy algorithm to maximize this posterior that we call “binary pursuit”. The algorithm allows modest variability in spike waveforms and recovers spike times with higher precision than the voltage sampling rate. This method substantially corrects cross-correlation artifacts that arise with conventional methods, and substantially outperforms clustering methods on both real and simulated data. Finally, we develop diagnostic tools that can be used to assess errors in spike sorting in the absence of ground truth. PMID:23671583

Mafic microgranular enclave swarms in the Chenar granitoid stock, NW of Kerman, Iran: evidence for magma mingling

NASA Astrophysics Data System (ADS)

Arvin, M.; Dargahi, S.; Babaei, A. A.

2004-10-01

Mafic microgranular enclaves (MME) are common in the Early to Middle Miocene Chenar granitoid stock, northwest of Kerman, which is a part of Central Iranian Eocene volcanic belt. They occur individually and in homogeneous or heterogeneous swarms. The MME form a number of two-dimensional structural arrangements, such as dykes, small rafts, vortices, folded lens-shapes and late swarms. The enclaves are elongated, rounded to non-elongated and subrounded in shape and often show some size-sorting parallel to direction of flow. Variation in the elongation of enclaves could reflect variations in the viscosity of the enclave, the time available for enclave deformation and differential strain during flow of the host granitoid magma. The most effective mechanism in the formation of enclave swarms in the Chenar granitoid stock was velocity gradient-related convection currents in the granitoid magma chamber. Gravitational sorting and the break-up of heterogeneous dykes also form MME swarms. The MME (mainly diorite to diorite gabbro) have igneous mineralogy and texture, and are marked by sharp contacts next to their host granitoid rocks. The contact is often marked by a chilled margin with no sign of solid state deformation. Evidence of disequilibrium is manifested in feldspars by oscillatory zoning, resorbed rims, mantling and punctuated growth, together with overgrowth of clinopyroxene/amphibole on quartz crystals, the acicular habit of apatites and the development of Fe-Ti oxides along clinopyroxene cleavages. These observations suggest that the MMEs are derived from a hybrid-magma formed as a result of the intrusion of a mafic magma into the base of a felsic magma chamber. The density contrast between hybrid-magma and the overlying felsic magma was reduced by the release of dissolved fluids and the ascent of exsolved gas bubbles from the mafic magma into the hybrid zone. Further convection in the magma chamber dispersed the hybridized magma as globules in the upper parts of magma chamber where their entrainment and coalescence eventually formed swarms. Magma mingling between felsic and hybrid-magmas led to the formation of MMEs and swarms.

Encapsulation of single cells on a microfluidic device integrating droplet generation with fluorescence-activated droplet sorting.

PubMed

Wu, Liang; Chen, Pu; Dong, Yingsong; Feng, Xiaojun; Liu, Bi-Feng

2013-06-01

Encapsulation of single cells is a challenging task in droplet microfluidics due to the random compartmentalization of cells dictated by Poisson statistics. In this paper, a microfluidic device was developed to improve the single-cell encapsulation rate by integrating droplet generation with fluorescence-activated droplet sorting. After cells were loaded into aqueous droplets by hydrodynamic focusing, an on-flight fluorescence-activated sorting process was conducted to isolate droplets containing one cell. Encapsulation of fluorescent polystyrene beads was investigated to evaluate the developed method. A single-bead encapsulation rate of more than 98 % was achieved under the optimized conditions. Application to encapsulate single HeLa cells was further demonstrated with a single-cell encapsulation rate of 94.1 %, which is about 200 % higher than those obtained by random compartmentalization. We expect this new method to provide a useful platform for encapsulating single cells, facilitating the development of high-throughput cell-based assays.

Reticulate evolution and incomplete lineage sorting among the ponderosa pines.

PubMed

Willyard, Ann; Cronn, Richard; Liston, Aaron

2009-08-01

Interspecific gene flow via hybridization may play a major role in evolution by creating reticulate rather than hierarchical lineages in plant species. Occasional diploid pine hybrids indicate the potential for introgression, but reticulation is hard to detect because ancestral polymorphism is still shared across many groups of pine species. Nucleotide sequences for 53 accessions from 17 species in subsection Ponderosae (Pinus) provide evidence for reticulate evolution. Two discordant patterns among independent low-copy nuclear gene trees and a chloroplast haplotype are better explained by introgression than incomplete lineage sorting or other causes of incongruence. Conflicting resolution of three monophyletic Pinus coulteri accessions is best explained by ancient introgression followed by a genetic bottleneck. More recent hybridization transferred a chloroplast from P. jeffreyi to a sympatric P. washoensis individual. We conclude that incomplete lineage sorting could account for other examples of non-monophyly, and caution against any analysis based on single-accession or single-locus sampling in Pinus.

High-Throughput Fluorescence-Based Isolation of Live C. elegans Larvae

PubMed Central

Fernandez, Anita G.; Bargmann, Bastiaan O. R.; Mis, Emily K.; Edgley, Mark. L.; Birnbaum, Kenneth D.; Piano, Fabio

2017-01-01

For the nematode Caenorhabditis elegans, automated selection of animals of specific genotypes from a mixed pool has become essential for genetic interaction or chemical screens. To date, such selection has been accomplished using specialized instruments. However, access to such dedicated equipment is not common. Here we describe live animal fluorescence-activated cell sorting (laFACS), a protocol for automatic selection of live L1 animals using a standard FACS. We show that a FACS can be used for the precise identification of GFP-expressing and non-GFP-expressing sub-populations and can accomplish high-speed sorting of live animals. We have routinely collected 100,000 or more homozygotes from a mixed starting population within two hours and with greater than ninety-nine percent purity. The sorted animals continue to develop normally, making this protocol ideally suited for the isolation of terminal mutants for use in genetic interaction or chemical genetic screens. PMID:22814389

Amniotic-Fluid Stem Cells: Growth Dynamics and Differentiation Potential after a CD-117-Based Selection Procedure

PubMed Central

Arnhold, S.; Glüer, S.; Hartmann, K.; Raabe, O.; Addicks, K.; Wenisch, S.; Hoopmann, M.

2011-01-01

Amniotic fluid (AF) has become an interesting source of fetal stem cells. However, AF contains heterogeneous and multiple, partially differentiated cell types. After isolation from the amniotic fluid, cells were characterized regarding their morphology and growth dynamics. They were sorted by magnetic associated cell sorting using the surface marker CD 117. In order to show stem cell characteristics such as pluripotency and to evaluate a possible therapeutic application of these cells, AF fluid-derived stem cells were differentiated along the adipogenic, osteogenic, and chondrogenic as well as the neuronal lineage under hypoxic conditions. Our findings reveal that magnetic associated cell sorting (MACS) does not markedly influence growth characteristics as demonstrated by the generation doubling time. There was, however, an effect regarding an altered adipogenic, osteogenic, and chondrogenic differentiation capacity in the selected cell fraction. In contrast, in the unselected cell population neuronal differentiation is enhanced. PMID:21437196

Isolation and characterization of anti-SEB peptides using magnetic sorting and bacterial peptide display library technology

NASA Astrophysics Data System (ADS)

Pennington, Joseph M.; Kogot, Joshua M.; Sarkes, Deborah A.; Pellegrino, Paul M.; Stratis-Cullum, Dimitra N.

2012-06-01

Peptide display libraries offer an alternative method to existing antibody development methods enabling rapid isolation of highly stable reagents for detection of new and emerging biological threats. Bacterial display libraries are used to isolate new peptide reagents within 1 week, which is simpler and timelier than using competing display library technology based on phage or yeast. Using magnetic sorting methods, we have isolated peptide reagents with high affinity and specificity to staphylococcal enterotoxin B (SEB), a suspected food pathogen. Flow cytometry methods were used for on-cell characterization and the binding affinity (Kd) of this new peptide reagent was determined to be 56 nm with minimal cross-reactivity to other proteins. These results demonstrated that magnetic sorting for new reagents using bacterial display libraries is a rapid and effective method and has the potential for current and new and emerging food pathogen targets.

Power feasibility of implantable digital spike sorting circuits for neural prosthetic systems.

PubMed

Zumsteg, Zachary S; Kemere, Caleb; O'Driscoll, Stephen; Santhanam, Gopal; Ahmed, Rizwan E; Shenoy, Krishna V; Meng, Teresa H

2005-09-01

A new class of neural prosthetic systems aims to assist disabled patients by translating cortical neural activity into control signals for prosthetic devices. Based on the success of proof-of-concept systems in the laboratory, there is now considerable interest in increasing system performance and creating implantable electronics for use in clinical systems. A critical question that impacts system performance and the overall architecture of these systems is whether it is possible to identify the neural source of each action potential (spike sorting) in real-time and with low power. Low power is essential both for power supply considerations and heat dissipation in the brain. In this paper we report that state-of-the-art spike sorting algorithms are not only feasible using modern complementary metal oxide semiconductor very large scale integration processes, but may represent the best option for extracting large amounts of data in implantable neural prosthetic interfaces.

Sorting processes with energy-constrained comparisons*

NASA Astrophysics Data System (ADS)

Geissmann, Barbara; Penna, Paolo

2018-05-01

We study very simple sorting algorithms based on a probabilistic comparator model. In this model, errors in comparing two elements are due to (1) the energy or effort put in the comparison and (2) the difference between the compared elements. Such algorithms repeatedly compare and swap pairs of randomly chosen elements, and they correspond to natural Markovian processes. The study of these Markov chains reveals an interesting phenomenon. Namely, in several cases, the algorithm that repeatedly compares only adjacent elements is better than the one making arbitrary comparisons: in the long-run, the former algorithm produces sequences that are "better sorted". The analysis of the underlying Markov chain poses interesting questions as the latter algorithm yields a nonreversible chain, and therefore its stationary distribution seems difficult to calculate explicitly. We nevertheless provide bounds on the stationary distributions and on the mixing time of these processes in several restrictions.

Origin and character of loesslike silt in unglaciated south-central Yakutia, Siberia, U.S.S.R.

USGS Publications Warehouse

Pewe, Troy Lewis; Journaux, Andre

1983-01-01

Loesslike silt mantles upland terraces and low plateaus throughout unglaciated south-central Yakutia but is thickest along the south side of the lower Aldan River valley and the east side of the Lena River valley. The silt is probably loess deposited during glacial advances by winds blowing southward from the Verkhoyansk Range and eastward across the broad vegetation-free flood plain of the braided Lena River. The well-sorted uniform tan silt is well displayed along the Aldan and Lena Rivers; the thickest exposure measured, more than 60 m, is on the Tyungyulyu Terrace on the east side of the Lena River. On the west side of the valley, it is 10-25 m thick but thins rapidly to a featheredge west of Yakutsk. Almost all scarps along the south side of the Aldan River are capped by 10-35 m of silt. The texture and mineral composition of the loess like silt are uniform throughout south-central Yakutia, whether it overlies limestone, poorly consolidated sandstone, alluvium, and glacial outwash. All silt samples examined contained a high percentage of quartz and feldspar. The silt stands in sheer cliffs and is massive, with little or no stratification. The origin of the loesslike silt has been ascribed to disintegration in place of country rock by a marine, estuarine, lacustrine, fluvial, residual, or eolian source, or to a combination of these processes. The marine and estuarine hypotheses have never had strong support, but the lacustrine, fluvial, and residual hypotheses have been advanced by many Soviet workers. The most widely accepted explanation of the origin of the upland silt is that it is a combination of lacustrine and alluvial deposits formed on great flood plains and marshy plains. This origin is unlikely, however, because there are no shorelines, wave-cut beaches, deltas, mudcracks, or ripple marks. Neither distinct stratification nor an appreciable amount of clay exists in the silt. Moreover, there is no definite upper boundary to the deposits, as would be expected of lacustrine deposits. The loesslike silt has also been described as a residual deposit formed by the breakdown, by freezing and thawing, of the underlying rocks. The silt bears no chemical, mineralogic, or textural relation to the underlying strata, however, and it is too thick to represent only breakdown of rocks in place. The widespread mantle of uniform loesslike silt is here considered to be windblown, derived from glacial outwash in braided streams and on broad plains, because: (1) it occurs as a surficial mantle; (2) it is lithologically independent of the underlying material; (3) it is stratified indistinctly or not at all, except in retransported material; (4) it is associated with sand dunes; (5) it contains fossils of land animals; (6) its sorting and texture are similar to that of loess and windblown dust from many places elsewhere in the world; (7) its grains are angular and relatively unweathered.

Spectral variability among rocks in visible and near-infrared mustispectral Pancam data collected at Gusev crater: Examinations using spectral mixture analysis and related techniques

USGS Publications Warehouse

Farrand, W. H.; Bell, J.F.; Johnson, J. R.; Squyres, S. W.; Soderblom, J.; Ming, D. W.

2006-01-01

Visible and near-infrared (VNIR) multispectral observations of rocks made by the Mars Exploration Rover Spirit's Panoramic camera (Pancam) have been analyzed using a spectral mixture analysis (SMA) methodology. Scenes have been examined from the Gusev crater plains into the Columbia Hills. Most scenes on the plains and in the Columbia Hills could be modeled as three end-member mixtures of a bright material, rock, and shade. Scenes of rocks disturbed by the rover's Rock Abrasion Tool (RAT) required additional end-members. In the Columbia Hills, there were a number of scenes in which additional rock end-members were required. The SMA methodology identified relatively dust-free areas on undisturbed rock surfaces as well as spectrally unique areas on RAT abraded rocks. Spectral parameters from these areas were examined, and six spectral classes were identified. These classes are named after a type rock or area and are Adirondack, Lower West Spur, Clovis, Wishstone, Peace, and Watchtower. These classes are discriminable based, primarily, on near-infrared (NIR) spectral parameters. Clovis and Watchtower class rocks appear more oxidized than Wishstone class rocks and Adirondack basalts based on their having higher 535 nm band depths. Comparison of the spectral parameters of these Gusev crater rocks to parameters of glass-dominated basaltic tuffs indicates correspondence between measurements of Clovis and Watchtower classes but divergence for the Wishstone class rocks, which appear to have a higher fraction of crystalline ferrous iron-bearing phases. Despite a high sulfur content, the rock Peace has NIR properties resembling plains basalts. Copyright 2006 by the American Geophysical Union.

Major, trace and REE geochemistry of recent sediments from lower Catumbela River (Angola)

NASA Astrophysics Data System (ADS)

Vinha, Manuela; Silva, M. G.; Cabral Pinto, Marina M. S.; Carvalho, Paula Cristina S.

2016-03-01

The mineralogy, texture, major, trace and rare earth elements, from recent sediment samples collected in the lower Catumbela River, were analysed in this study to characterize and discuss the factors controlling its geochemistry and provide data that can be used as tracers of Catumbela River inputs to the Angolan continental shelf. The sediments are mainly sands and silty-sands, but sandy-silt also occurs and the mineralogy is composed of quartz, feldspar, phyllosilicates, magnetite, ilmenite and also carbonates when the river crosses limestones and marls in the downstream sector. The hydraulic sorting originates magnetite-ilmenite and REE-enriched minerals placers. The mineralogy of the sediments is controlled by the source rocks and the degree of chemical weathering is lower than erosion. The texture is mainly controlled by location. There is enrichment in all the analysed trace elements in the fine grained, clay minerals and Fe-oxy-hydroxides rich sediments, compared to the coarse grained and quartz plus feldspar rich ones. The coarse grained sediments (without the placers) are impoverished in ΣREE when compared with UCC and NASC compositions, while the fine grained sediments have ΣREE contents similar to UCC and NASC. The placers have ΣREE contents up to 959.59 mg/kg. The source composition is the dominant factor controlling the REE geochemistry of the analysed sediments as there is no difference in the (La/Yb)N, (La/Sm)N and (Gd/Yb)N ratios in coarse and fine grained sediments. The sorting of magnetite, ilmenite, zircon, throrite, thorianite, rutile and titanite explain the HREE/LREE enriched patterns of the coarse grained sediments.

A comparative analysis of the distribution, composition and geochemistry of surface sediments in the Linthipe and Songwe River Deltas of Lake Malawi

NASA Astrophysics Data System (ADS)

Dolozi, Michael B.; Kalindekafe, Leonard S. N.; Ngongondo, Cosmo; Dulanya, Zuze

2011-05-01

The Linthipe and Songwe River Deltas are found to the extreme southern and northern parts of Lake Malawi respectively within the East African Rift System. They occur in contrasting tectonic and climatic settings of the rift-valley half-graben structure. The sub-aqueous part of the Songwe Delta consists of relatively finer grained sediments than the Linthipe but is relatively poorly sorted. The composition of sediments within the Songwe Delta shows significant amounts of sedimentary and volcanic lithic fragments which are lacking in the Linthipe. On the other hand, ferromanganese nodules were recovered in the Linthipe Delta at water depths of 80-100 m but were not recovered in Songwe Delta at similar water depths. The finer grained facies of the Songwe Delta suggests a more prograded delta than the Linthipe. However, its poorly sorted sediments are most likely due to the heterogeneous geology of the source area; higher and faster depositional rates due to climatic influences. The lack of Ferromangenese nodules in the Songwe Delta is probably due to the sand-mud facies boundary which occurs at shallower depth. The higher proportion of Total Organic Carbon (TOC) in higher the Linthipe Delta is probably related to high rates of environmental degradation such as deforestation and agricultural activities in the riparian catchment basin. This is in contrast to the Songwe catchment basin where the levels of anthropogenic disturbance are less and climate, geomorphology and the heterogenous character of the source rocks seems to play a major role in the sedimentation processes.

Sorting drops and cells with acoustics: acoustic microfluidic fluorescence-activated cell sorter.

PubMed

Schmid, Lothar; Weitz, David A; Franke, Thomas

2014-10-07

We describe a versatile microfluidic fluorescence-activated cell sorter that uses acoustic actuation to sort cells or drops at ultra-high rates. Our acoustic sorter combines the advantages of traditional fluorescence-activated cell (FACS) and droplet sorting (FADS) and is applicable for a multitude of objects. We sort aqueous droplets, at rates as high as several kHz, into two or even more outlet channels. We can also sort cells directly from the medium without prior encapsulation into drops; we demonstrate this by sorting fluorescently labeled mouse melanoma cells in a single phase fluid. Our acoustic microfluidic FACS is compatible with standard cell sorting cytometers, yet, at the same time, enables a rich variety of more sophisticated applications.

Studies of electrical properties of low-resistivity sandstones based on digital rock technology

NASA Astrophysics Data System (ADS)

Yan, Weichao; Sun, Jianmeng; Zhang, Jinyan; Yuan, Weiguo; Zhang, Li; Cui, Likai; Dong, Huaimin

2018-02-01

Electrical properties are important parameters to quantitatively calculate water saturation in oil and gas reservoirs by well logging interpretation. It is usual that oil layers show high resistivity responses, while water layers show low-resistivity responses. However, there are low-resistivity oil zones that exist in many oilfields around the world, leading to difficulties for reservoir evaluation. In our research, we used digital rock technology to study different internal and external factors to account for low rock resistivity responses in oil layers. We first constructed three-dimensional digital rock models with five components based on micro-computed tomography technology and x-ray diffraction experimental results, and then oil and water distributions in pores were determined by the pore morphology method. When the resistivity of each component was assigned, rock resistivities were calculated by using the finite element method. We collected 20 sandstone samples to prove the effectiveness of our numerical simulation methods. Based on the control variate method, we studied the effects of different factors on the resistivity indexes and rock resistivities. After sensitivity analyses, we found the main factors which caused low rock resistivities in oil layers. For unfractured rocks, influential factors arranged in descending order of importance were porosity, clay content, temperature, water salinity, heavy mineral, clay type and wettability. In addition, we found that the resistivity index could not provide enough information to identify a low-resistivity oil zone by using laboratory rock-electric experimental results. These results can not only expand our understandings of the electrical properties of low-resistivity rocks from oil layers, but also help identify low-resistivity oil zones better.

Rock Slope Design Criteria : Executive Summary Report

DOT National Transportation Integrated Search

2010-06-01

Based on the stratigraphy and the type of slope stability problems, the flat lying, Paleozoic age, sedimentary rocks of Ohio were divided into three design units: 1) competent rock design unit consisting of sandstones, limestones, and siltstones that...

Learning Cellular Sorting Pathways Using Protein Interactions and Sequence Motifs

PubMed Central

Lin, Tien-Ho; Bar-Joseph, Ziv

2011-01-01

Abstract Proper subcellular localization is critical for proteins to perform their roles in cellular functions. Proteins are transported by different cellular sorting pathways, some of which take a protein through several intermediate locations until reaching its final destination. The pathway a protein is transported through is determined by carrier proteins that bind to specific sequence motifs. In this article, we present a new method that integrates protein interaction and sequence motif data to model how proteins are sorted through these sorting pathways. We use a hidden Markov model (HMM) to represent protein sorting pathways. The model is able to determine intermediate sorting states and to assign carrier proteins and motifs to the sorting pathways. In simulation studies, we show that the method can accurately recover an underlying sorting model. Using data for yeast, we show that our model leads to accurate prediction of subcellular localization. We also show that the pathways learned by our model recover many known sorting pathways and correctly assign proteins to the path they utilize. The learned model identified new pathways and their putative carriers and motifs and these may represent novel protein sorting mechanisms. Supplementary results and software implementation are available from http://murphylab.web.cmu.edu/software/2010_RECOMB_pathways/. PMID:21999284

A New Algorithm Using the Non-Dominated Tree to Improve Non-Dominated Sorting.

PubMed

Gustavsson, Patrik; Syberfeldt, Anna

2018-01-01

Non-dominated sorting is a technique often used in evolutionary algorithms to determine the quality of solutions in a population. The most common algorithm is the Fast Non-dominated Sort (FNS). This algorithm, however, has the drawback that its performance deteriorates when the population size grows. The same drawback applies also to other non-dominating sorting algorithms such as the Efficient Non-dominated Sort with Binary Strategy (ENS-BS). An algorithm suggested to overcome this drawback is the Divide-and-Conquer Non-dominated Sort (DCNS) which works well on a limited number of objectives but deteriorates when the number of objectives grows. This article presents a new, more efficient algorithm called the Efficient Non-dominated Sort with Non-Dominated Tree (ENS-NDT). ENS-NDT is an extension of the ENS-BS algorithm and uses a novel Non-Dominated Tree (NDTree) to speed up the non-dominated sorting. ENS-NDT is able to handle large population sizes and a large number of objectives more efficiently than existing algorithms for non-dominated sorting. In the article, it is shown that with ENS-NDT the runtime of multi-objective optimization algorithms such as the Non-Dominated Sorting Genetic Algorithm II (NSGA-II) can be substantially reduced.

Morphology of melt-rich channels formed during reaction infiltration experiments on partially molten mantle rocks

NASA Astrophysics Data System (ADS)

Pec, Matej; Holtzman, Benjamin; Zimmerman, Mark; Kohlstedt, David

2016-04-01

Geochemical, geophysical and geological observations suggest that melt extraction from the partially molten mantle occurs by some sort of channelized flow. Melt-solid reactions can lead to melt channelization due to a positive feedback between melt flow and reaction. If a melt-solid reaction increases local permeability, subsequent flow is increased as well and promotes further reaction. This process can lead to the development of high-permeability channels which emerge from background flow. In nature, anastomozing tabular dunite bodies within peridotitic massifs are thought to represent fossilized channels that formed by reactive flow. The conditions under which such channels can emerge are treated by the reaction infiltration instability (RII) theory (e.g. Szymczak and Ladd 2014). In this contribution, we report the results of a series of Darcy type experiments designed to study the development of channels due to RII in mantle lithologies (Pec et al. 2015). We sandwiched a partially molten rock between a melt source and a porous sink and annealed it at high-pressures (P = 300 MPa) and high-temperatures (T = 1200° or 1250° C) under a controlled pressure gradient (∇P = 0-100 MPa/mm) for up to 5 hours. The partially molten rock is formed by 50:50 mixtures of San Carlos olivine (Ol, Fo ˜ 88) and clinopyroxene (Cpx) with either 4, 10 or 20 vol% of alkali basalt added. The source and sink are disks of alkali basalt and porous alumina, respectively. During the experiments, silica undersaturated melt from the melt source dissolves Cpx and precipitates an iron rich Ol (Fo ˜ 82) thereby forming a Cpx-free reaction layer at the melt source - partially molten rock interface. The melt fraction in the reaction layer increases significantly (40% melt) compared to the protolith, confirming that the reaction increases the permeability of the partially molten rock. In experiments annealed under a low pressure gradient (and hence slow melt flow velocity) the reaction layer is planar and no channels develop. However, if the melt migration velocity exceeds ˜5 μm/s the reaction layer locally protrudes into the partially molten rock forming finger-like melt-rich channels. The morphology and spacing of the channels depends on the initial melt fraction. With 20 vol% melt, multiple and voluminous channels with an elliptical core formed of pure melt develop. At lower melt contents, fewer and thinner channels develop. Our experiments demonstrate that melt-rock reactions can lead to melt channelization in mantle lithologies. The morphology of the channels seems to depend on the initial permeability perturbations present in the starting material. The observed lithological transformations are in broad agreement with natural observations. However, the resulting channels lack the tabular anastomozing shapes which are likely caused by shear deformation in nature. Therefore, both reaction-driven as well as stress-driven melt segregation have to interact in nature to form the observed dunite channels. Szymczak, P., and A. J. C. Ladd (2014), Reactive-infiltration instabilities in rocks. Part 2. Dissolution of a porous matrix, J. Fluid Mech., 738, 591-630. Pec, M., B. K. Holtzman, M. Zimmerman, and D. L. Kohlstedt (2015), Reaction infiltration instabilities in experiments on partially molten mantle rocks, Geology, 43(7), 575-578, doi:10.1130/G36611.1.

Automatic pattern identification of rock moisture based on the Staff-RF model

NASA Astrophysics Data System (ADS)

Zheng, Wei; Tao, Kai; Jiang, Wei

2018-04-01

Studies on the moisture and damage state of rocks generally focus on the qualitative description and mechanical information of rocks. This method is not applicable to the real-time safety monitoring of rock mass. In this study, a musical staff computing model is used to quantify the acoustic emission signals of rocks with different moisture patterns. Then, the random forest (RF) method is adopted to form the staff-RF model for the real-time pattern identification of rock moisture. The entire process requires only the computing information of the AE signal and does not require the mechanical conditions of rocks.

Geologic framework of lower Cook Inlet, Alaska

USGS Publications Warehouse

Fisher, M.A.; Magoon, L.B.

1978-01-01

Three seismic reflectors are present throughout the lower Cook Inlet basin and can be correlated with onshore geologic features. The reflections come from unconformities at the base of the Tertiary sequence, at the base of Upper Cretaceous rocks, and near the base of Upper Jurassic strata. A contour map of the deepest horizon shows that Mesozoic rocks are formed into a northeast-trending syncline. Along the southeast flank of the basin, the northwest-dipping Mesozoic rocks are truncated at the base of Tertiary rocks. The Augustine-Seldovia arch trends across the basin axis between Augustine Island and Seldovia. Tertiary rocks thin onto the arch from the north and south. Numerous anticlines, smaller in structural relief and breadth than the Augustine-Seldovia arch, trend northeast parallel with the basin, and intersect the arch at oblique angles. The stratigraphic record shows four cycles of sedimentation and tectonism that are bounded by three regional unconformities in lower Cook Inlet and by four thrust faults and the modern Benioff zone in flysch rocks of the Kenai Peninsula and the Gulf of Alaska. The four cycles of sedimentation are, from oldest to youngest, the early Mesozoic, late Mesozoic, early Cenozoic, and late Cenozoic. Data on organic geochemistry of the rocks from one well suggest that Middle Jurassic strata may be a source of hydrocarbons. Seismic data show that structural traps are formed by northeast-trending anticlines and by structures formed at the intersections of these anticlines with the transbasin arch. Stratigraphic traps may be formed beneath the unconformity at the base of Tertiary strata and beneath unconformities within Mesozoic strata.

Geotechnical Aspects of Rock Erosion in Emergency Spillway Channels. Report 5 Summary of Results, Conclusions and Recommendations

DTIC Science & Technology

1990-09-01

channel. Erosion susceptibility, similar to spillway evaluation, must emphasize rock-mass rating or classification systems (e.g. rippability ) which, when...recommends site-specific "proof of concept" testing of an Erosion Probability Index (EPI) based on rock-mass rippability rating and lithostratigraphic...and rock-mass parameters that provide key input parameters to Weaver’s (1975) Rippability Rating (RR) scheme (or Bieniawski’s (1974) Rock Mass Rating