Tracking Nitrogen Sources, Transformation, and Transport at a Basin Scale with Complex Plain River Networks.

PubMed

Yi, Qitao; Chen, Qiuwen; Hu, Liuming; Shi, Wenqing

2017-05-16

This research developed an innovative approach to reveal nitrogen sources, transformation, and transport in large and complex river networks in the Taihu Lake basin using measurement of dual stable isotopes of nitrate. The spatial patterns of δ 15 N corresponded to the urbanization level, and the nitrogen cycle was associated with the hydrological regime at the basin level. During the high flow season of summer, nonpoint sources from fertilizer/soils and atmospheric deposition constituted the highest proportion of the total nitrogen load. The point sources from sewage/manure, with high ammonium concentrations and high δ 15 N and δ 18 O contents in the form of nitrate, accounted for the largest inputs among all sources during the low flow season of winter. Hot spot areas with heavy point source pollution were identified, and the pollutant transport routes were revealed. Nitrification occurred widely during the warm seasons, with decreased δ 18 O values; whereas great potential for denitrification existed during the low flow seasons of autumn and spring. The study showed that point source reduction could have effects over the short-term; however, long-term efforts to substantially control agriculture nonpoint sources are essential to eutrophication alleviation for the receiving lake, which clarifies the relationship between point and nonpoint source control.

Short-term Wind Forecasting at Wind Farms using WRF-LES and Actuator Disk Model

NASA Astrophysics Data System (ADS)

Kirkil, Gokhan

2017-04-01

Short-term wind forecasts are obtained for a wind farm on a mountainous terrain using WRF-LES. Multi-scale simulations are also performed using different PBL parameterizations. Turbines are parameterized using Actuator Disc Model. LES models improved the forecasts. Statistical error analysis is performed and ramp events are analyzed. Complex topography of the study area affects model performance, especially the accuracy of wind forecasts were poor for cross valley-mountain flows. By means of LES, we gain new knowledge about the sources of spatial and temporal variability of wind fluctuations such as the configuration of wind turbines.

Of Moving Targets and Chameleons: Why the Concept of Difficulty Is So Hard to Pin Down

ERIC Educational Resources Information Center

DeKeyser, Robert

2016-01-01

In this short article I try to present a taxonomy of sources of difficulty, in particular complexity. I emphasize how these factors interact with each other and with individual differences and treatments, before illustrating some of these interactions and the methodological issues involved in studying them with examples from the empirical studies…

Non-thermal damage to lead tungstate induced by intense short-wavelength laser radiation (Conference Presentation)

NASA Astrophysics Data System (ADS)

Vozda, Vojtech; Boháček, Pavel; Burian, Tomáš; Chalupský, Jaromir; Hájková, Vera; Juha, Libor; Vyšín, Ludek; Gaudin, Jérôme; Heimann, Philip A.; Hau-Riege, Stefan P.; Jurek, Marek; Klinger, Dorota; Krzywinski, Jacek; Messerschmidt, Marc; Moeller, Stefan P.; Nagler, Robert; Pelka, Jerzy B.; Rowen, Michael; Schlotter, William F.; Swiggers, Michele L.; Sinn, Harald; Sobierajski, Ryszard; Tiedtke, Kai; Toleikis, Sven; Tschentscher, Thomas; Turner, Joshua J.; Wabnitz, Hubertus; Nelson, Art J.; Kozlova, Maria V.; Vinko, Sam M.; Whitcher, Thomas; Dzelzainis, Thomas; Renner, Oldrich; Saksl, Karel; Fäustlin, Roland R.; Khorsand, Ali R.; Fajardo, Marta; Iwan, Bianca S.; Andreasson, Jakob; Hajdu, Janos; Timneanu, Nicusor; Wark, Justin S.; Riley, David; Lee, Richard W.; Nagasono, Mitsuru; Yabashi, Makina

2017-05-01

Interaction of short-wavelength free-electron laser (FEL) beams with matter is undoubtedly a subject to extensive investigation in last decade. During the interaction various exotic states of matter, such as warm dense matter, may exist for a split second. Prior to irreversible damage or ablative removal of the target material, complicated electronic processes at the atomic level occur. As energetic photons impact the target, electrons from inner atomic shells are almost instantly photo-ionized, which may, in some special cases, cause bond weakening, even breaking of the covalent bonds, subsequently result to so-called non-thermal melting. The subject of our research is ablative damage to lead tungstate (PbWO4) induced by focused short-wavelength FEL pulses at different photon energies. Post-mortem analysis of complex damage patterns using the Raman spectroscopy, atomic-force (AFM) and Nomarski (DIC) microscopy confirms an existence of non-thermal melting induced by high-energy photons in the ionic monocrystalline target. Results obtained at Linac Coherent Light Source (LCLS), Free-electron in Hamburg (FLASH), and SPring-8 Compact SASE Source (SCSS) are presented in this Paper.

Status of the Short-Pulse X-ray Project at the Advanced Photon Source

DOE Office of Scientific and Technical Information (OSTI.GOV)

Nassiri, A; Berenc, T G; Borland, M

2012-07-01

The Advanced Photon Source Upgrade (APS-U) Project at Argonne will include generation of short-pulse x-rays based on Zholents deflecting cavity scheme. We have chosen superconducting (SC) cavities in order to have a continuous train of crabbed bunches and flexibility of operating modes. In collaboration with Jefferson Laboratory, we are prototyping and testing a number of single-cell deflecting cavities and associated auxiliary systems with promising initial results. In collaboration with Lawrence Berkeley National Laboratory, we are working to develop state-of-the-art timing, synchronization, and differential rf phase stability systems that are required for SPX. Collaboration with Advanced Computations Department at Stanford Linearmore » Accelerator Center is looking into simulations of complex, multi-cavity geometries with lower- and higher-order modes waveguide dampers using ACE3P. This contribution provides the current R&D status of the SPX project.« less

Origin of short-period signals following P-diffracted waves: A case study of the 1994 Bolivian deep earthquake

NASA Astrophysics Data System (ADS)

Tono, Yoko; Yomogida, Kiyoshi

1997-10-01

Seismograms of the June 9, 1994, Bolivian deep earthquake recorded at epicentral distances from 100° to 122° show a train of signals with predominant frequencies between 1 and 2 Hz after the arrivals of short-period diffracted P-waves (P diff). We investigate the origin of these signals following P diff by analyzing a total of 20 records from the IRIS broad-band network and the short-period network of New Zealand. The arrivals of late signals continue for over 100 s, that is two times longer than the estimated source duration of this event. Subsequent aftershocks, which cause the following signals, are not expected from the long-period records. These results indicate that the long continuation of short-period signals is not due to the source complexities. The signals following P diff have small incident angles, and their spectra show peaks at about the same frequencies. These characteristics of the following signals exclude the possibility that their origin is shallow structure such as the heterogeneities beneath the stations or upper mantle. P diff propagates a long distance within the heterogeneous region near the core-mantle boundary. We conclude that the short-period signals following the main P diff are scattered waves caused by small-scale heterogeneities near the core-mantle boundary.

A STATISTICAL STUDY OF FLARE PRODUCTIVITY ASSOCIATED WITH SUNSPOT PROPERTIES IN DIFFERENT MAGNETIC TYPES OF ACTIVE REGIONS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yang, Ya-Hui; Hsieh, Min-Shiu; Yu, Hsiu-Shan

It is often believed that intense flares preferentially originate from the large-size active regions (ARs) with strong magnetic fields and complex magnetic configurations. This work investigates the dependence of flare activity on the AR properties and clarifies the influence of AR magnetic parameters on the flare productivity, based on two data sets of daily sunspot and flare information as well as the GOES soft X-ray measurements and HMI vector magnetograms. By considering the evolution of magnetic complexity, we find that flare behaviors are quite different in the short- and long-lived complex ARs and the ARs with more complex magnetic configurationsmore » are likely to host more impulsive and intense flares. Furthermore, we investigate several magnetic quantities and perform the two-sample Kolmogorov–Smirnov test to examine the similarity/difference between two populations in different types of ARs. Our results demonstrate that the total source field strength on the photosphere has a good correlation with the flare activity in complex ARs. It is noted that intense flares tend to occur at the regions of strong source field in combination with an intermediate field-weighted shear angle. This result implies that the magnetic free energy provided by a complex AR could be high enough to trigger a flare eruption even with a moderate magnetic shear on the photosphere. We thus suggest that the magnetic free energy represented by the source field rather than the photospheric magnetic complexity is a better quantity to characterize the flare productivity of an AR, especially for the occurrence of intense flares.« less

Source analysis of short and long latency vestibular-evoked potentials (VsEPs) produced by left vs. right ear air-conducted 500 Hz tone pips.

PubMed

Todd, N P M; Paillard, A C; Kluk, K; Whittle, E; Colebatch, J G

2014-06-01

Todd et al. (2014) have recently demonstrated the presence of vestibular dependent changes both in the morphology and in the intensity dependence of auditory evoked potentials (AEPs) when passing through the vestibular threshold as determined by vestibular evoked myogenic potentials (VEMPs). In this paper we extend this work by comparing left vs. right ear stimulation and by conducting a source analysis of the resulting evoked potentials of short and long latency. Ten healthy, right-handed subjects were recruited and evoked potentials were recorded to both left- and right-ear sound stimulation, above and below vestibular threshold. Below VEMP threshold, typical AEPs were recorded, consisting of mid-latency (MLR) waves Na and Pa followed by long latency AEPs (LAEPs) N1 and P2. In the supra-threshold condition, the expected changes in morphology were observed, consisting of: (1) short-latency vestibular evoked potentials (VsEPs) which have no auditory correlate, i.e. the ocular VEMP (OVEMP) and inion response related potentials; (2) a later deflection, labelled N42/P52, followed by the LAEPs N1 and P2. Statistical analysis of the vestibular dependent responses indicated a contralateral effect for inion related short-latency responses and a left-ear/right-hemisphere advantage for the long-latency responses. Source analysis indicated that the short-latency effects may be mediated by a contralateral projection to left cerebellum, while the long-latency effects were mediated by a contralateral projection to right cingulate cortex. In addition we found evidence of a possible vestibular contribution to the auditory T-complex in radial temporal lobe sources. These last results raise the possibility that acoustic activation of the otolith organs could potentially contribute to auditory processing. Copyright © 2014 The Authors. Published by Elsevier B.V. All rights reserved.

Emergence of microbial diversity due to cross-feeding interactions in a spatial model of gut microbial metabolism.

PubMed

Hoek, Milan J A van; Merks, Roeland M H

2017-05-16

The human gut contains approximately 10 14 bacteria, belonging to hundreds of different species. Together, these microbial species form a complex food web that can break down nutrient sources that our own digestive enzymes cannot handle, including complex polysaccharides, producing short chain fatty acids and additional metabolites, e.g., vitamin K. Microbial diversity is important for colonic health: Changes in the composition of the microbiota have been associated with inflammatory bowel disease, diabetes, obesity and Crohn's disease, and make the microbiota more vulnerable to infestation by harmful species, e.g., Clostridium difficile. To get a grip on the controlling factors of microbial diversity in the gut, we here propose a multi-scale, spatiotemporal dynamic flux-balance analysis model to study the emergence of metabolic diversity in a spatial gut-like, tubular environment. The model features genome-scale metabolic models (GEM) of microbial populations, resource sharing via extracellular metabolites, and spatial population dynamics and evolution. In this model, cross-feeding interactions emerge readily, despite the species' ability to metabolize sugars autonomously. Interestingly, the community requires cross-feeding for producing a realistic set of short-chain fatty acids from an input of glucose, If we let the composition of the microbial subpopulations change during invasion of adjacent space, a complex and stratified microbiota evolves, with subspecies specializing on cross-feeding interactions via a mechanism of compensated trait loss. The microbial diversity and stratification collapse if the flux through the gut is enhanced to mimic diarrhea. In conclusion, this in silico model is a helpful tool in systems biology to predict and explain the controlling factors of microbial diversity in the gut. It can be extended to include, e.g., complex nutrient sources, and host-microbiota interactions via the intestinal wall.

Development of High-Resolution Dynamic Dust Source Function - A Case Study with a Strong Dust Storm in a Regional Model

NASA Technical Reports Server (NTRS)

Kim, Dongchul; Chin, Mian; Kemp, Eric M.; Tao, Zhining; Peters-Lidard, Christa D.; Ginoux, Paul

2017-01-01

A high-resolution dynamic dust source has been developed in the NASA Unified-Weather Research and Forecasting (NU-WRF) model to improve the existing coarse static dust source. In the new dust source map, topographic depression is in 1-km resolution and surface bareness is derived using the Normalized Difference Vegetation Index (NDVI) data from Moderate Resolution Imaging Spectroradiometer (MODIS). The new dust source better resolves the complex topographic distribution over the Western United States where its magnitude is higher than the existing, coarser resolution static source. A case study is conducted with an extreme dust storm that occurred in Phoenix, Arizona in 0203 UTC July 6, 2011. The NU-WRF model with the new high-resolution dynamic dust source is able to successfully capture the dust storm, which was not achieved with the old source identification. However the case study also reveals several challenges in reproducing the time evolution of the short-lived, extreme dust storm events.

Development of High-Resolution Dynamic Dust Source Function -A Case Study with a Strong Dust Storm in a Regional Model

PubMed Central

Kim, Dongchul; Chin, Mian; Kemp, Eric M.; Tao, Zhining; Peters-Lidard, Christa D.; Ginoux, Paul

2018-01-01

A high-resolution dynamic dust source has been developed in the NASA Unified-Weather Research and Forecasting (NU-WRF) model to improve the existing coarse static dust source. In the new dust source map, topographic depression is in 1-km resolution and surface bareness is derived using the Normalized Difference Vegetation Index (NDVI) data from Moderate Resolution Imaging Spectroradiometer (MODIS). The new dust source better resolves the complex topographic distribution over the Western United States where its magnitude is higher than the existing, coarser resolution static source. A case study is conducted with an extreme dust storm that occurred in Phoenix, Arizona in 02-03 UTC July 6, 2011. The NU-WRF model with the new high-resolution dynamic dust source is able to successfully capture the dust storm, which was not achieved with the old source identification. However the case study also reveals several challenges in reproducing the time evolution of the short-lived, extreme dust storm events. PMID:29632432

Development of High-Resolution Dynamic Dust Source Function -A Case Study with a Strong Dust Storm in a Regional Model.

PubMed

Kim, Dongchul; Chin, Mian; Kemp, Eric M; Tao, Zhining; Peters-Lidard, Christa D; Ginoux, Paul

2017-06-01

A high-resolution dynamic dust source has been developed in the NASA Unified-Weather Research and Forecasting (NU-WRF) model to improve the existing coarse static dust source. In the new dust source map, topographic depression is in 1-km resolution and surface bareness is derived using the Normalized Difference Vegetation Index (NDVI) data from Moderate Resolution Imaging Spectroradiometer (MODIS). The new dust source better resolves the complex topographic distribution over the Western United States where its magnitude is higher than the existing, coarser resolution static source. A case study is conducted with an extreme dust storm that occurred in Phoenix, Arizona in 02-03 UTC July 6, 2011. The NU-WRF model with the new high-resolution dynamic dust source is able to successfully capture the dust storm, which was not achieved with the old source identification. However the case study also reveals several challenges in reproducing the time evolution of the short-lived, extreme dust storm events.

A Study of the 2012 January 19 Complex Type II Radio Burst Using Wind, SOHO, and STEREO Observations*

NASA Technical Reports Server (NTRS)

Teklu, T. B.; Gholap, A. V.; Gopalswamy, N.; Yashiro, S.; Makela, P.; Akiyama, S.; Thakur, N.; Xie, H.

2016-01-01

We report on a case study of the complex type II radio burst of 2012 January 19 and its association with a white-light coronal mass ejection (CME). The complexity can be described as the appearance of an additional type II burst component and strong intensity variation. The dynamic spectrum shows a pair of type II bursts with fundamental harmonic structures, one confined to decameter-hectometric (DH) wavelengths and the other extending to kilometric (km) wavelengths. By comparing the speeds obtained from white-light images with that speed of the shock inferred from the drift rate, we show that the source of the short-lived DH component is near the nose.

Dynamics of the Oso-Steelhead landslide from broadband seismic analysis

NASA Astrophysics Data System (ADS)

Hibert, C.; Stark, C. P.; Ekström, G.

2015-06-01

We carry out a combined analysis of the short- and long-period seismic signals generated by the devastating Oso-Steelhead landslide that occurred on 22 March 2014. The seismic records show that the Oso-Steelhead landslide was not a single slope failure, but a succession of multiple failures distinguished by two major collapses that occurred approximately 3 min apart. The first generated long-period surface waves that were recorded at several proximal stations. We invert these long-period signals for the forces acting at the source, and obtain estimates of the first failure runout and kinematics, as well as its mass after calibration against the mass-centre displacement estimated from remote-sensing imagery. Short-period analysis of both events suggests that the source dynamics of the second event is more complex than the first. No distinct long-period surface waves were recorded for the second failure, which prevents inversion for its source parameters. However, by comparing the seismic energy of the short-period waves generated by both events we are able to estimate the volume of the second. Our analysis suggests that the volume of the second failure is about 15-30% of the total landslide volume, giving a total volume mobilized by the two events between 7 × 106 and 10 × 106 m3, in agreement with estimates from ground observations and lidar mapping.

Lead isotopic evidence for mixed sources of Proterozoic granites and pegmatites, Black Hills, South Dakota, USA

NASA Astrophysics Data System (ADS)

Krogstad, Eirik J.; Walker, Richard J.; Nabelek, Peter I.; Russ-Nabelek, Carol

1993-10-01

The lead isotopic compositions of K-feldspars separated from the ca. 1700 Ma Harney Peak Granite complex and spatially associated granitic pegmatites indicate that these rocks were derived from at least two sources. It has been reported previously that the core of the Harney Peak Granite complex is dominated by relatively lower/ gd18O (avg. 11.5 %.) granites, whereas higher / gd18O (avg. 13.2%.) granites occur around the periphery of the complex. The higher δ 18O granites and one simple pegmatite have low values of 207Pb /204Pb for their 206Pb /204Pb Thus, they likely were derived from a source with a short crustal residence time. This source may have been the pelitic schists into which the Harney Peak Granite complex and pegmatites were intruded. Feldspars from granites with lower / gd18O values have significantly higher 207Pb /204Pb for their 206Pb /204Pb . The data define a linear array with a slope equivalent to an age of ca. 2.6 Ga with t 2 defined to be 1.7 Ga. Such a slope could represent a mixing array or a secondary isochron for the source. These low δ18O granites could have been derived from a source with a high U/ Pb and with a crustal residence beginning before the Proterozoic. The source (s) of these granites may have been a sediment derived from late Archean continental crust. The highly evolved Tin Mountain pegmatite has lead isotopic systematics intermediate between those of the two granite groups, suggesting either a mixed source or contamination. Two late Archean granites, the Little Elk Granite and the Bear Mountain Granite, had precursors with high U/Pb and low Th/U histories. The Th/U history of the Bear Mountain Granite is too low for this rock to have been an important component of the source of the Proterozoic granites. However, crustal rocks with lead isotopic compositions similar to those of the Little Elk Granite were an important source of lead for some of the Proterozoic granitic rocks.

Broadband seismic and acoustic observations of volcanic seismicity

NASA Astrophysics Data System (ADS)

Aster, R.; Lees, J.; Neuberg, J.

2000-08-01

It has been frequently noted (e.g. Aki, 1992) that volcanoes present some of the most difficult challenges in seismology due to a plethora of complex source and structural issues. The broadband seismo-acoustic study of active volcanoes is still in its adolescence, and the papers in this volume primarily describe first-order attempts to understand these signals and to build on a much longer history of short-period seismic observations and interpretations.

Childbirth in aristocratic households of Heian Japan.

PubMed

Andreeva, Anna

2014-01-01

This paper focuses on childbirth in Japan's aristocratic households during the Heian period (794-1185). Drawing on various sources, including court diaries, visual sources, literary records, and Japan's first medical collection, with its assortment of gynaecological and obstetric prescriptions, as well as Buddhist and other ritual texts, this short excursion into the cultural history of childbirth offers an insight into how childbirth was experienced and managed in Heian Japan. In particular, it addresses the variety of ideas, knowledge systems and professionals involved in framing and supporting the process of childbirth in elite households. In so doing, it casts light on the complex background of early Japanese medicine and healthcare for women.

Benefits and hazards of dietary carbohydrate.

PubMed

Connor, William E; Duell, P Barton; Connor, Sonja L

2005-11-01

Since the dawn of civilization, carbohydrate has comprised the largest source of energy in the diet for most populations. The source of the carbohydrate has been from plants in the form of complex carbohydrate high in fiber. Only in affluent cultures has sugar contributed so much of the total energy. When carbohydrate is consumed as a major component of a plant-based diet, a high-carbohydrate, low-fat diet is associated with low plasma levels of total and low-density lipoprotein cholesterol, less coronary heart disease, less diabetes, and less obesity. Very low-carbohydrate (ketogenic) diets may provide short-term solutions but do not lead to a long-term solution for most people.

Ultra-short ion and neutron pulse production

DOEpatents

Leung, Ka-Ngo; Barletta, William A.; Kwan, Joe W.

2006-01-10

An ion source has an extraction system configured to produce ultra-short ion pulses, i.e. pulses with pulse width of about 1 .mu.s or less, and a neutron source based on the ion source produces correspondingly ultra-short neutron pulses. To form a neutron source, a neutron generating target is positioned to receive an accelerated extracted ion beam from the ion source. To produce the ultra-short ion or neutron pulses, the apertures in the extraction system of the ion source are suitably sized to prevent ion leakage, the electrodes are suitably spaced, and the extraction voltage is controlled. The ion beam current leaving the source is regulated by applying ultra-short voltage pulses of a suitable voltage on the extraction electrode.

Synergistic microbial consortium for bioenergy generation from complex natural energy sources.

PubMed

Wang, Victor Bochuan; Yam, Joey Kuok Hoong; Chua, Song-Lin; Zhang, Qichun; Cao, Bin; Chye, Joachim Loo Say; Yang, Liang

2014-01-01

Microbial species have evolved diverse mechanisms for utilization of complex carbon sources. Proper combination of targeted species can affect bioenergy production from natural waste products. Here, we established a stable microbial consortium with Escherichia coli and Shewanella oneidensis in microbial fuel cells (MFCs) to produce bioenergy from an abundant natural energy source, in the form of the sarcocarp harvested from coconuts. This component is mostly discarded as waste. However, through its usage as a feedstock for MFCs to produce useful energy in this study, the sarcocarp can be utilized meaningfully. The monospecies S. oneidensis system was able to generate bioenergy in a short experimental time frame while the monospecies E. coli system generated significantly less bioenergy. A combination of E. coli and S. oneidensis in the ratio of 1:9 (v:v) significantly enhanced the experimental time frame and magnitude of bioenergy generation. The synergistic effect is suggested to arise from E. coli and S. oneidensis utilizing different nutrients as electron donors and effect of flavins secreted by S. oneidensis. Confocal images confirmed the presence of biofilms and point towards their importance in generating bioenergy in MFCs.

Dynamical complexity of short and noisy time series. Compression-Complexity vs. Shannon entropy

NASA Astrophysics Data System (ADS)

Nagaraj, Nithin; Balasubramanian, Karthi

2017-07-01

Shannon entropy has been extensively used for characterizing complexity of time series arising from chaotic dynamical systems and stochastic processes such as Markov chains. However, for short and noisy time series, Shannon entropy performs poorly. Complexity measures which are based on lossless compression algorithms are a good substitute in such scenarios. We evaluate the performance of two such Compression-Complexity Measures namely Lempel-Ziv complexity (LZ) and Effort-To-Compress (ETC) on short time series from chaotic dynamical systems in the presence of noise. Both LZ and ETC outperform Shannon entropy (H) in accurately characterizing the dynamical complexity of such systems. For very short binary sequences (which arise in neuroscience applications), ETC has higher number of distinct complexity values than LZ and H, thus enabling a finer resolution. For two-state ergodic Markov chains, we empirically show that ETC converges to a steady state value faster than LZ. Compression-Complexity measures are promising for applications which involve short and noisy time series.

Review on peculiar issues of field emission in vacuum nanoelectronic devices

NASA Astrophysics Data System (ADS)

Filip, Valeriu; Filip, Lucian Dragoş; Wong, Hei

2017-12-01

Some of the modern aspects of field emission based electron sources have been collated in a short and comprehensive review. The usually overlooked peculiar aspects in this research field have been particularly emphasized in order to increase the interest in further fundamental studies and technological applications. The vast material was roughly split in two main branches which occasionally overlap: the electron emission devices based on chemically homogeneous nanostructured surfaces and the more complex nanocomposite emitting surfaces.

Inferring tidal wetland stability from channel sediment fluxes: observations and a conceptual model

USGS Publications Warehouse

Ganju, Neil K.; Nidzieko, Nicholas J.; Kirwan, Matthew L.

2013-01-01

Anthropogenic and climatic forces have modified the geomorphology of tidal wetlands over a range of timescales. Changes in land use, sediment supply, river flow, storminess, and sea level alter the layout of tidal channels, intertidal flats, and marsh plains; these elements define wetland complexes. Diagnostically, measurements of net sediment fluxes through tidal channels are high-temporal resolution, spatially integrated quantities that indicate (1) whether a complex is stable over seasonal timescales and (2) what mechanisms are leading to that state. We estimated sediment fluxes through tidal channels draining wetland complexes on the Blackwater and Transquaking Rivers, Maryland, USA. While the Blackwater complex has experienced decades of degradation and been largely converted to open water, the Transquaking complex has persisted as an expansive, vegetated marsh. The measured net export at the Blackwater complex (1.0 kg/s or 0.56 kg/m2/yr over the landward marsh area) was caused by northwesterly winds, which exported water and sediment on the subtidal timescale; tidally forced net fluxes were weak and precluded landward transport of suspended sediment from potential seaward sources. Though wind forcing also exported sediment at the Transquaking complex, strong tidal forcing and proximity to a turbidity maximum led to an import of sediment (0.031 kg/s or 0.70 kg/m2/yr). This resulted in a spatially averaged accretion of 3.9 mm/yr, equaling the regional relative sea level rise. Our results suggest that in areas where seaward sediment supply is dominant, seaward wetlands may be more capable of withstanding sea level rise over the short term than landward wetlands. We propose a conceptual model to determine a complex's tendency toward stability or instability based on sediment source, wetland channel location, and transport mechanisms. Wetlands with a reliable portfolio of sources and transport mechanisms appear better suited to offset natural and anthropogenic loss.

Properties of thermospheric gravity waves on earth, Venus and Mars

NASA Technical Reports Server (NTRS)

Mayr, H. G.; Harris, I.; Pesnell, W. D.

1992-01-01

A spectral model with spherical harmonics and Fourier components that can simulate atmospheric perturbations in the global geometry of a multiconstituent atmosphere is presented. The boundaries are the planetary surface where the transport velocities vanish and the exobase where molecular heat conduction and viscosity dominate. The time consuming integration of the conservation equations is reduced to computing the transfer function (TF) which describes the dynamic properties of the medium divorced from the complexities in the temporal and horizontal variations of the excitation source. Given the TF, the atmospheric response to a chosen source distribution is then obtained in short order. Theoretical studies are presented to illuminate some properties of gravity waves on earth, Venus and Mars.

Rapid heterogeneous assembly of multiple magma reservoirs prior to Yellowstone supereruptions.

PubMed

Wotzlaw, Jörn-Frederik; Bindeman, Ilya N; Stern, Richard A; D'Abzac, Francois-Xavier; Schaltegger, Urs

2015-09-10

Large-volume caldera-forming eruptions of silicic magmas are an important feature of continental volcanism. The timescales and mechanisms of assembly of the magma reservoirs that feed such eruptions as well as the durations and physical conditions of upper-crustal storage remain highly debated topics in volcanology. Here we explore a comprehensive data set of isotopic (O, Hf) and chemical proxies in precisely U-Pb dated zircon crystals from all caldera-forming eruptions of Yellowstone supervolcano. Analysed zircons record rapid assembly of multiple magma reservoirs by repeated injections of isotopically heterogeneous magma batches and short pre-eruption storage times of 10(3) to 10(4) years. Decoupled oxygen-hafnium isotope systematics suggest a complex source for these magmas involving variable amounts of differentiated mantle-derived melt, Archean crust and hydrothermally altered shallow-crustal rocks. These data demonstrate that complex magma reservoirs with multiple sub-chambers are a common feature of rift- and hotspot related supervolcanoes. The short duration of reservoir assembly documents rapid crustal remelting and two to three orders of magnitude higher magma production rates beneath Yellowstone compared to continental arc volcanoes. The short pre-eruption storage times further suggest that the detection of voluminous reservoirs of eruptible magma beneath active supervolcanoes may only be possible prior to an impending eruption.

Rapid heterogeneous assembly of multiple magma reservoirs prior to Yellowstone supereruptions

PubMed Central

Wotzlaw, Jörn-Frederik; Bindeman, Ilya N.; Stern, Richard A.; D’Abzac, Francois-Xavier; Schaltegger, Urs

2015-01-01

Large-volume caldera-forming eruptions of silicic magmas are an important feature of continental volcanism. The timescales and mechanisms of assembly of the magma reservoirs that feed such eruptions as well as the durations and physical conditions of upper-crustal storage remain highly debated topics in volcanology. Here we explore a comprehensive data set of isotopic (O, Hf) and chemical proxies in precisely U-Pb dated zircon crystals from all caldera-forming eruptions of Yellowstone supervolcano. Analysed zircons record rapid assembly of multiple magma reservoirs by repeated injections of isotopically heterogeneous magma batches and short pre-eruption storage times of 103 to 104 years. Decoupled oxygen-hafnium isotope systematics suggest a complex source for these magmas involving variable amounts of differentiated mantle-derived melt, Archean crust and hydrothermally altered shallow-crustal rocks. These data demonstrate that complex magma reservoirs with multiple sub-chambers are a common feature of rift- and hotspot related supervolcanoes. The short duration of reservoir assembly documents rapid crustal remelting and two to three orders of magnitude higher magma production rates beneath Yellowstone compared to continental arc volcanoes. The short pre-eruption storage times further suggest that the detection of voluminous reservoirs of eruptible magma beneath active supervolcanoes may only be possible prior to an impending eruption. PMID:26356304

Emerging Techniques for Vicarious Calibration of Visible Through Short Wave Infrared Remote Sensing Systems

NASA Technical Reports Server (NTRS)

Ryan, Robert E.

2006-01-01

Simple field-portable white light LED calibration source shows promise for visible range (420-750 nm) 1) Prototype demonstrated <0.5% drift over 10-40 C temperature range; 2) Additional complexity (more LEDs) will be necessary for extending spectral range into the NIR and SWIR; 3) LED long lifetimes should produce at least several hundreds of hours or more stability, minimizing need for expensive calibrations and supporting long-duration field campaigns; and 4) Enabling technology for developing autonomous sites.

The Diamond Light Source and the challenges ahead for structural biology: some informal remarks.

PubMed

Ramakrishnan, V

2015-03-06

The remarkable advances in structural biology in the past three decades have led to the determination of increasingly complex structures that lie at the heart of many important biological processes. Many of these advances have been made possible by the use of X-ray crystallography using synchrotron radiation. In this short article, some of the challenges and prospects that lie ahead will be summarized. © 2015 The Author(s) Published by the Royal Society. All rights reserved.

Meroterpenes from Marine Invertebrates: Structures, Occurrence, and Ecological Implications

PubMed Central

Menna, Marialuisa; Imperatore, Concetta; D’Aniello, Filomena; Aiello, Anna

2013-01-01

Meroterpenes are widely distributed among marine organisms; they are particularly abundant within brown algae, but other important sources include microorganisms and invertebrates. In the present review the structures and bioactivities of meroterpenes from marine invertebrates, mainly sponges and tunicates, are summarized. More than 300 molecules, often complex and with unique skeletons originating from intra- and inter-molecular cyclizations, and/or rearrangements, are illustrated. The reported syntheses are mentioned. The issue of a potential microbial link to their biosynthesis is also shortly outlined. PMID:23685889

Shutterless ion mobility spectrometer with fast pulsed electron source

NASA Astrophysics Data System (ADS)

Bunert, E.; Heptner, A.; Reinecke, T.; Kirk, A. T.; Zimmermann, S.

2017-02-01

Ion mobility spectrometers (IMS) are devices for fast and very sensitive trace gas analysis. The measuring principle is based on an initial ionization process of the target analyte. Most IMS employ radioactive electron sources, such as 63Ni or 3H. These radioactive materials have the disadvantage of legal restrictions and the electron emission has a predetermined intensity and cannot be controlled or disabled. In this work, we replaced the 3H source of our IMS with 100 mm drift tube length with our nonradioactive electron source, which generates comparable spectra to the 3H source. An advantage of our emission current controlled nonradioactive electron source is that it can operate in a fast pulsed mode with high electron intensities. By optimizing the geometric parameters and developing fast control electronics, we can achieve very short electron emission pulses for ionization with high intensities and an adjustable pulse width of down to a few nanoseconds. This results in small ion packets at simultaneously high ion densities, which are subsequently separated in the drift tube. Normally, the required small ion packet is generated by a complex ion shutter mechanism. By omitting the additional reaction chamber, the ion packet can be generated directly at the beginning of the drift tube by our pulsed nonradioactive electron source with only slight reduction in resolving power. Thus, the complex and costly shutter mechanism and its electronics can also be omitted, which leads to a simple low-cost IMS-system with a pulsed nonradioactive electron source and a resolving power of 90.

Statistical averaging of marine magnetic anomalies and the aging of oceanic crust.

USGS Publications Warehouse

Blakely, R.J.

1983-01-01

Visual comparison of Mesozoic and Cenozoic magnetic anomalies in the North Pacific suggests that older anomalies contain less short-wavelength information than younger anomalies in this area. To test this observation, magnetic profiles from the North Pacific are examined from crust of three ages: 0-2.1, 29.3-33.1, and 64.9-70.3Ma. For each time period, at least nine profiles were analyzed by 1) calculating the power density spectrum of each profile, 2) averaging the spectra together, and 3) computing a 'recording filter' for each time period by assuming a hypothetical seafloor model. The model assumes that the top of the source is acoustic basement, the source thickness is 0.5km, and the time scale of geomagnetic reversals is according to Ness et al. (1980). The calculated power density spectra of the three recording filters are complex in shape but show an increase of attenuation of short-wavelength information as the crust ages. These results are interpreted using a multilayer model for marine magnetic anomalies in which the upper layer, corresponding to pillow basalt of seismic layer 2A, acts as a source of noise to the magnetic anomalies. As the ocean crust ages, this noisy contribution by the pillow basalts becomes less significant to the anomalies. Consequently, magnetic sources below layer 2A must be faithful recorders of geomagnetic reversals.-AuthorPacific power density spectrum

Compton Reflection in AGN with Simbol-X

NASA Astrophysics Data System (ADS)

Beckmann, V.; Courvoisier, T. J.-L.; Gehrels, N.; Lubiński, P.; Malzac, J.; Petrucci, P. O.; Shrader, C. R.; Soldi, S.

2009-05-01

AGN exhibit complex hard X-ray spectra. Our current understanding is that the emission is dominated by inverse Compton processes which take place in the corona above the accretion disk, and that absorption and reflection in a distant absorber play a major role. These processes can be directly observed through the shape of the continuum, the Compton reflection hump around 30 keV, and the iron fluorescence line at 6.4 keV. We demonstrate the capabilities of Simbol-X to constrain complex models for cases like MCG-05-23-016, NGC 4151, NGC 2110, and NGC 4051 in short (10 ksec) observations. We compare the simulations with recent observations on these sources by INTEGRAL, Swift and Suzaku. Constraining reflection models for AGN with Simbol-X will help us to get a clear view of the processes and geometry near to the central engine in AGN, and will give insight to which sources are responsible for the Cosmic X-ray background at energies >20 keV.

Radiative transfer theory for a random distribution of low velocity spheres as resonant isotropic scatterers

NASA Astrophysics Data System (ADS)

Sato, Haruo; Hayakawa, Toshihiko

2014-10-01

Short-period seismograms of earthquakes are complex especially beneath volcanoes, where the S wave mean free path is short and low velocity bodies composed of melt or fluid are expected in addition to random velocity inhomogeneities as scattering sources. Resonant scattering inherent in a low velocity body shows trap and release of waves with a delay time. Focusing of the delay time phenomenon, we have to consider seriously multiple resonant scattering processes. Since wave phases are complex in such a scattering medium, the radiative transfer theory has been often used to synthesize the variation of mean square (MS) amplitude of waves; however, resonant scattering has not been well adopted in the conventional radiative transfer theory. Here, as a simple mathematical model, we study the sequence of isotropic resonant scattering of a scalar wavelet by low velocity spheres at low frequencies, where the inside velocity is supposed to be low enough. We first derive the total scattering cross-section per time for each order of scattering as the convolution kernel representing the decaying scattering response. Then, for a random and uniform distribution of such identical resonant isotropic scatterers, we build the propagator of the MS amplitude by using causality, a geometrical spreading factor and the scattering loss. Using those propagators and convolution kernels, we formulate the radiative transfer equation for a spherically impulsive radiation from a point source. The synthesized MS amplitude time trace shows a dip just after the direct arrival and a delayed swelling, and then a decaying tail at large lapse times. The delayed swelling is a prominent effect of resonant scattering. The space distribution of synthesized MS amplitude shows a swelling near the source region in space, and it becomes a bell shape like a diffusion solution at large lapse times.

Technical Report on Modeling for Quasispecies Abundance Inference with Confidence Intervals from Metagenomic Sequence Data

DOE Office of Scientific and Technical Information (OSTI.GOV)

McLoughlin, K.

2016-01-11

The overall aim of this project is to develop a software package, called MetaQuant, that can determine the constituents of a complex microbial sample and estimate their relative abundances by analysis of metagenomic sequencing data. The goal for Task 1 is to create a generative model describing the stochastic process underlying the creation of sequence read pairs in the data set. The stages in this generative process include the selection of a source genome sequence for each read pair, with probability dependent on its abundance in the sample. The other stages describe the evolution of the source genome from itsmore » nearest common ancestor with a reference genome, breakage of the source DNA into short fragments, and the errors in sequencing the ends of the fragments to produce read pairs.« less

Synergistic Microbial Consortium for Bioenergy Generation from Complex Natural Energy Sources

PubMed Central

Yam, Joey Kuok Hoong; Chua, Song-Lin; Zhang, Qichun; Cao, Bin; Chye, Joachim Loo Say

2014-01-01

Microbial species have evolved diverse mechanisms for utilization of complex carbon sources. Proper combination of targeted species can affect bioenergy production from natural waste products. Here, we established a stable microbial consortium with Escherichia coli and Shewanella oneidensis in microbial fuel cells (MFCs) to produce bioenergy from an abundant natural energy source, in the form of the sarcocarp harvested from coconuts. This component is mostly discarded as waste. However, through its usage as a feedstock for MFCs to produce useful energy in this study, the sarcocarp can be utilized meaningfully. The monospecies S. oneidensis system was able to generate bioenergy in a short experimental time frame while the monospecies E. coli system generated significantly less bioenergy. A combination of E. coli and S. oneidensis in the ratio of 1 : 9 (v : v) significantly enhanced the experimental time frame and magnitude of bioenergy generation. The synergistic effect is suggested to arise from E. coli and S. oneidensis utilizing different nutrients as electron donors and effect of flavins secreted by S. oneidensis. Confocal images confirmed the presence of biofilms and point towards their importance in generating bioenergy in MFCs. PMID:25097866

Online & Offline data storage and data processing at the European XFEL facility

NASA Astrophysics Data System (ADS)

Gasthuber, Martin; Dietrich, Stefan; Malka, Janusz; Kuhn, Manuela; Ensslin, Uwe; Wrona, Krzysztof; Szuba, Janusz

2017-10-01

For the upcoming experiments at the European XFEL light source facility, a new online and offline data processing and storage infrastructure is currently being built and verified. Based on the experience of the system being developed for the Petra III light source at DESY, presented at the last CHEP conference, we further develop the system to cope with the much higher volumes and rates ( 50GB/sec) together with a more complex data analysis and infrastructure conditions (i.e. long range InfiniBand connections). This work will be carried out in collaboration of DESY/IT, European XFEL and technology support from IBM/Research. This presentation will shortly wrap up the experience of 1 year runtime of the PetraIII ([3]) system, continue with a short description of the challenges for the European XFEL ([2]) experiments and the main section, showing the proposed system for online and offline with initial result from real implementation (HW & SW). This will cover the selected cluster filesystem GPFS ([5]) including Quality of Service (QOS), extensive use of flash based subsystems and other new and unique features this architecture will benefit from.

Matched field localization based on CS-MUSIC algorithm

NASA Astrophysics Data System (ADS)

Guo, Shuangle; Tang, Ruichun; Peng, Linhui; Ji, Xiaopeng

2016-04-01

The problem caused by shortness or excessiveness of snapshots and by coherent sources in underwater acoustic positioning is considered. A matched field localization algorithm based on CS-MUSIC (Compressive Sensing Multiple Signal Classification) is proposed based on the sparse mathematical model of the underwater positioning. The signal matrix is calculated through the SVD (Singular Value Decomposition) of the observation matrix. The observation matrix in the sparse mathematical model is replaced by the signal matrix, and a new concise sparse mathematical model is obtained, which means not only the scale of the localization problem but also the noise level is reduced; then the new sparse mathematical model is solved by the CS-MUSIC algorithm which is a combination of CS (Compressive Sensing) method and MUSIC (Multiple Signal Classification) method. The algorithm proposed in this paper can overcome effectively the difficulties caused by correlated sources and shortness of snapshots, and it can also reduce the time complexity and noise level of the localization problem by using the SVD of the observation matrix when the number of snapshots is large, which will be proved in this paper.

CRISPR-cas loci profiling of Cronobacter sakazakii pathovars.

PubMed

Ogrodzki, Pauline; Forsythe, Stephen James

2016-12-01

Cronobacter sakazakii sequence types 1, 4, 8 and 12 are associated with outbreaks of neonatal meningitis and necrotizing enterocolitis infections. However clonality results in strains which are indistinguishable using conventional methods. This study investigated the use of clustered regularly interspaced short palindromic repeats (CRISPR)-cas loci profiling for epidemiological investigations. Seventy whole genomes of C. sakazakii strains from four clonal complexes which were widely distributed temporally, geographically and origin of source were profiled. All strains encoded the same type I-E subtype CRISPR-cas system with a total of 12 different CRISPR spacer arrays. This study demonstrated the greater discriminatory power of CRISPR spacer array profiling compared with multilocus sequence typing, which will be of use in source attribution during Cronobacter outbreak investigations.

Experimental investigation of microwave interaction with magnetoplasma in miniature multipolar configuration using impedance measurements

DOE Office of Scientific and Technical Information (OSTI.GOV)

Dey, Indranuj, E-mail: indranuj@aees.kyushu-u.ac.jp; Toyoda, Yuji; Yamamoto, Naoji

2014-09-15

A miniature microwave plasma source employing both radial and axial magnetic fields for plasma confinement has been developed for micro-propulsion applications. Plasma is initiated by launching microwaves via a short monopole antenna to circumvent geometrical cutoff limitations. The amplitude and phase of the forward and reflected microwave power is measured to obtain the complex reflection coefficient from which the equivalent impedance of the plasma source is determined. Effect of critical plasma density condition is reflected in the measurements and provides insight into the working of the miniature plasma source. A basic impedance calculation model is developed to help in understandingmore » the experimental observations. From experiment and theory, it is seen that the equivalent impedance magnitude is controlled by the coaxial discharge boundary conditions, and the phase is influenced primarily by the plasma immersed antenna impedance.« less

Reduced mercury deposition in New Hampshire from 1996 to 2002 due to changes in local sources.

PubMed

Han, Young-Ji; Holsen, Thomas M; Evers, David C; Driscoll, Charles T

2008-12-01

Changes in deposition of gaseous divalent mercury (Hg(II)) and particulate mercury (Hg(p)) in New Hampshire due to changes in local sources from 1996 to 2002 were assessed using the Industrial Source Complex Short Term (ISCST3) model (regional and global sources and Hg atmospheric reactions were not considered). Mercury (Hg) emissions in New Hampshire and adjacent areas decreased significantly (from 1540 to 880 kg yr(-1)) during this period, and the average annual modeled deposition of total Hg also declined from 17 to 7.0 microg m(-2) yr(-1) for the same period. In 2002, the maximum amount of Hg deposition was modeled to be in southern New Hampshire, while for 1996 the maximum deposition occurred farther north and east. The ISCST3 was also used to evaluate two future scenarios. The average percent difference in deposition across all cells was 5% for the 50% reduction scenario and 9% for the 90% reduction scenario.

Los Alamos nEDM Experiment and Demonstration of Ramsey's Method on Stored UCNs at the LANL UCN Source

NASA Astrophysics Data System (ADS)

Clayton, Steven; Chupp, Tim; Cude-Woods, Christopher; Currie, Scott; Ito, Takeyasu; Liu, Chen-Yu; Long, Joshua; MacDonald, Stephen; Makela, Mark; O'Shaughnessy, Christopher; Plaster, Brad; Ramsey, John; Saunders, Andy; LANL nEDM Collaboration

2017-09-01

The Los Alamos National Laboratory ultracold neutron (UCN) source was recently upgraded for a factor of 5 improvement in stored density, providing the statistical precision needed for a room temperature neutron electric dipole moment measurement with sensitivity 3 ×10-27 e . cm, a factor 10 better than the limit set by the Sussex-RAL-ILL experiment. Here, we show results of a demonstration of Ramsey's separated oscillatory fields method on stored UCNs at the LANL UCN source and in a geometry relevant for a nEDM measurement. We argue a world-leading nEDM experiment could be performed at LANL with existing technology and a short lead time, providing a physics result with sensitivity intermediate between the current limit set by Sussex-RAL-ILL, and the anticipated limit from the complex, cryogenic nEDM experiment planned for the next decade at the ORNL Spallation Neutron Source (SNS-nEDM). This work was supported by the Los Alamos LDRD Program, Project 20140015DR.

Two scales of inflation at Lastarria-Cordon del Azufre volcanic complex, central Andes, revealed from ASAR-ENVISAT interferometric data

NASA Astrophysics Data System (ADS)

Froger, J.-L.; Remy, D.; Bonvalot, S.; Legrand, D.

2007-03-01

ASAR-ENVISAT Interferometric Synthetic Aperture Radar (InSAR) data collected over the Lastarria-Cordon del Azufre complex (Chile-Argentina) between March 2003 and May 2005 show the persistence of the large wavelength ground inflation revealed by Pritchard and Simons in 2002 from the analysis of ERS InSAR data [Nature 418 (2002) 167-170]. After reducing the tropospheric contribution in the interferograms using a combination of data network adjustment and analysis of MODIS images, we produced an accurate interferometric time series showing a 2 yr long temporal evolution of the ground displacements patterns. Two distinct inflating signals are detected. The main signal covers an elliptical area with a 45 km NNE-SSW major axis and a 37 km minor axis. It is correlated with a regional topographic dome. We estimated its maximum inflation rate to ˜ 2.5 cm yr - 1 . We inverted the InSAR data for a range of source geometries (spherical, prolate ellipsoids, penny-shaped cracks). The inferred source parameters for 2003-2005 period are consistent with an over-pressured reservoir at shallow to intermediate crustal depths (7-15 km), with an average volumetric rate of inflation of about 14 × 10 6 m 3 yr - 1 . In addition to this main signal a new feature highlighted by the ASAR data is short wavelength inflation (6 km wide) at the location of Lastarria volcano on the northern margin of the large wavelength signal. We explain this short wavelength signal by a spherical over-pressured source lying 1000 m below the summit of Lastarria volcano. We estimate the average volumetric rate of inflation during the observation period to be ˜ 35 × 10 3 m 3 yr - 1 . It is remarkable that both volumetric variations for the large and small inflations exhibit the same evolution during the 2003-2005 period, suggesting that both processes could be related. On the basis of the inversion results and of arguments provided by field evidences and a morpho-structural analysis of the Digital Elevation Model of the area, we propose that the deep source have a magmatic origin while the shallow source is most likely related to hydrothermal fluids. In our interpretation, the on-going deformation processes observed at Lastarria-Cordon del Azufre volcanic complex could represent an evolving pre-caldera silicic system. Further field geological and geophysical investigations will be required to confirm these hypotheses and refine the proposed model, mostly based on satellite observations.

Ion heating and short wavelength fluctuations in a helicon plasma source

DOE Office of Scientific and Technical Information (OSTI.GOV)

Scime, E. E.; Carr, J. Jr.; Galante, M.

2013-03-15

For typical helicon source parameters, the driving antenna can couple to two plasma modes; the weakly damped 'helicon' wave, and the strongly damped, short wavelength, slow wave. Here, we present direct measurements, obtained with two different techniques, of few hundred kHz, short wavelength fluctuations that are parametrically driven by the primary antenna and localized to the edge of the plasma. The short wavelength fluctuations appear for plasma source parameters such that the driving frequency is approximately equal to the lower hybrid frequency. Measurements of the steady-state ion temperature and fluctuation amplitude radial profiles suggest that the anomalously high ion temperaturesmore » observed at the edge of helicon sources result from damping of the short wavelength fluctuations. Additional measurements of the time evolution of the ion temperature and fluctuation profiles in pulsed helicon source plasmas support the same conclusion.« less

Fully integrated Q-switch for commercial high-power resonator with solitary XLMA-fiber

NASA Astrophysics Data System (ADS)

Lange, R.; Bachert, C.; Rehmann, G.; Weber, H.; Luxen, R.; Enns, H.; Schenk, M.; Hosdorf, S.; Marfels, S.; Bay, M.; Kösters, A.; Krause, V.; Giesberts, M.; Fitzau, O.; Hoffmann, H.-D.

2018-02-01

In surface processing applications the correlation of laser power to processing speed demands a further enhancement of the performance of short-pulsed laser sources with respect to the investment costs. The frequently applied concept of master oscillator power amplifier relies on a complex structure, parts of which are highly sensitive to back reflected amplified radiation. Aiming for a simpler, robust source using only a single ytterbium doped XLMA fiber in a q-switched resonator appears as promising design approach eliminating the need for subsequent amplification. This concept requires a high power-tolerant resonator which is provided by the multikilowatt laser platform of Laserline including directly water-cooled active fiber thermal management. Laserline GmbH and Fraunhofer Institute for Laser Technology joined their forces1 to upgrade standard high power laser sources for short-pulsed operation exceeding 1 kW of average power. Therefor a compact, modular qswitch has been developed. In this paper the implementation of a polarization independent q-switch into an off-the-shelf multi-kilowatt diodepumped continuous wave fiber source is shown. In this early step of implementation we demonstrated more than 1000 W of average power at pulse lengths below 50 ns FWHM and 7.5 mJ pulse energy. The M2 corresponds to 9.5. Reliability of the system is demonstrated based on measurements including temperature and stability records. We investigated the variation possibilities concerning pulse parameters and shape as well as upcoming challenges in power up-scaling.

Theoretical study of the effects of refraction on the noise produced by turbulence in jets

NASA Technical Reports Server (NTRS)

Graham, E. W.; Graham, B. B.

1974-01-01

The production of noise by turbulence in jets is an extremely complex problem. One aspect of that problem, the transmission of acoustic disturbances from the interior of the jet through the mean velocity profile and into the far field is studied. The jet (two-dimensional or circular cylindrical) is assumed infinitely long with mean velocity profile independent of streamwise location. The noise generator is a sequence of transient sources drifting with the surrounding fluid and confined to a short length of the jet.

Unit with Fluidized Bed for Gas-Vapor Activation of Different Carbonaceous Materials for Various Purposes: Design, Computation, Implementation

NASA Astrophysics Data System (ADS)

Strativnov, Eugene

2017-02-01

We propose the technology of obtaining the promising material with wide specter of application-activated nanostructured carbon. In terms of technical indicators, it will stand next to the materials produced by complex regulations with the use of costly chemical operations. It can be used for the following needs: as a sorbent for hemosorption and enterosorption, for creation of the newest source of electric current (lithium and zinc air batteries, supercapacitors), and for processes of short-cycle adsorption gas separation.

Ink composition for making a conductive silver structure

DOE Office of Scientific and Technical Information (OSTI.GOV)

Walker, Steven B.; Lewis, Jennifer A.

An ink composition for making a conductive silver structure comprises a silver salt and a complex of (a) a complexing agent and a short chain carboxylic acid or (b) a complexing agent and a salt of a short chain carboxylic acid, according to one embodiment. A method for making a silver structure entails combining a silver salt and a complexing agent, and then adding a short chain carboxylic acid or a salt of the short chain carboxylic acid to the combined silver salt and a complexing agent to form an ink composition. A concentration of the complexing agent in themore » ink composition is reduced to form a concentrated formulation, and the silver salt is reduced to form a conductive silver structure, where the concentrated formulation and the conductive silver structure are formed at a temperature of about 120.degree. C. or less.« less

Modelling the effects of trade-offs between long and short-term objectives in fisheries management.

PubMed

Mardle, Simon; Pascoe, Sean

2002-05-01

Fisheries management is typically a complex problem, from both an environmental and political perspective. The main source of conflict occurs between the need for stock conservation and the need for fishing community well-being, which is typically measured by employment and income levels. For most fisheries, overexploitation of the stock requires a reduction in the level of fishing activity. While this may lead to long-term benefits (both conservation and economic), it also leads to a short-term reduction in employment and regional incomes. In regions which are heavily dependent on fisheries, short-term consequences of conservation efforts may be considerable. The relatively high degree of scientific uncertainty with respect to the status of the stocks and the relatively short lengths of political terms of office, generally give rise to the short-run view taking the highest priority when defining policy objectives. In this paper, a multi-objective model of the North Sea is developed that incorporates both long-term and short-term objectives. Optimal fleet sizes are estimated taking into consideration different preferences between the defined short-term and long-term objectives. The subsequent results from the model give the short-term and long-term equilibrium status of the fishery incorporating the effects of the short-term objectives. As would be expected, an optimal fleet from a short-term perspective is considerably larger than an optimal fleet from a long-run perspective. Conversely, stock sizes and sustainable yields are considerably lower in the long-term if a short-term perspective is used in setting management policies. The model results highlight what is essentially a principal-agent problem, with the objectives of the policy makers not necessarily reflecting the objectives of society as a whole.

A novel semiconductor-based, fully incoherent amplified spontaneous emission light source for ghost imaging

PubMed Central

Hartmann, Sébastien; Elsäßer, Wolfgang

2017-01-01

Initially, ghost imaging (GI) was demonstrated with entangled light from parametric down conversion. Later, classical light sources were introduced with the development of thermal light GI concepts. State-of-the-art classical GI light sources rely either on complex combinations of coherent light with spatially randomizing optical elements or on incoherent lamps with monochromating optics, however suffering strong losses of efficiency and directionality. Here, a broad-area superluminescent diode is proposed as a new light source for classical ghost imaging. The coherence behavior of this spectrally broadband emitting opto-electronic light source is investigated in detail. An interferometric two-photon detection technique is exploited in order to resolve the ultra-short correlation timescales. We thereby quantify the coherence time, the photon statistics as well as the number of spatial modes unveiling a complete incoherent light behavior. With a one-dimensional proof-of-principle GI experiment, we introduce these compact emitters to the field which could be beneficial for high-speed GI systems as well as for long range GI sensing in future applications. PMID:28150737

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bucksbaum, P.H.; Ceglio, N.M.

This volume contains the papers delivered at the conference which chronicle the major advances in short-wavelength laser physics and technology. It is divided into the following sections: Sources of Short-Wavelength Radiation; Applications of Short-Wavelength Radiation; High-Intensity Laser Sources; and High-Intensity Laser-Matter Interactions.

A Systematic Search for Short-term Variability of EGRET Sources

NASA Technical Reports Server (NTRS)

Wallace, P. M.; Griffis, N. J.; Bertsch, D. L.; Hartman, R. C.; Thompson, D. J.; Kniffen, D. A.; Bloom, S. D.

2000-01-01

The 3rd EGRET Catalog of High-energy Gamma-ray Sources contains 170 unidentified sources, and there is great interest in the nature of these sources. One means of determining source class is the study of flux variability on time scales of days; pulsars are believed to be stable on these time scales while blazers are known to be highly variable. In addition, previous work has demonstrated that 3EG J0241-6103 and 3EG J1837-0606 are candidates for a new gamma-ray source class. These sources near the Galactic plane display transient behavior but cannot be associated with any known blazers. Although, many instances of flaring AGN have been reported, the EGRET database has not been systematically searched for occurrences of short-timescale (approximately 1 day) variability. These considerations have led us to conduct a systematic search for short-term variability in EGRET data, covering all viewing periods through proposal cycle 4. Six 3EG catalog sources are reported here to display variability on short time scales; four of them are unidentified. In addition, three non-catalog variable sources are discussed.

Deep, Broadband Spectral Line Surveys of Molecule-rich Interstellar Clouds

DOE Office of Scientific and Technical Information (OSTI.GOV)

Widicus Weaver, Susanna L.; Laas, Jacob C.; Zou, Luyao

2017-09-01

Spectral line surveys are an indispensable tool for exploring the physical and chemical evolution of astrophysical environments due to the vast amount of data that can be obtained in a relatively short amount of time. We present deep, broadband spectral line surveys of 30 interstellar clouds using two broadband λ  = 1.3 mm receivers at the Caltech Submillimeter Observatory. This information can be used to probe the influence of physical environment on molecular complexity. We observed a wide variety of sources to examine the relative abundances of organic molecules as they relate to the physical properties of the source (i.e., temperature,more » density, dynamics, etc.). The spectra are highly sensitive, with noise levels ≤25 mK at a velocity resolution of ∼0.35 km s{sup −1}. In the initial analysis presented here, column densities and rotational temperatures have been determined for the molecular species that contribute significantly to the spectral line density in this wavelength regime. We present these results and discuss their implications for complex molecule formation in the interstellar medium.« less

Pyrolysis Oil-Based Lipid Production as Biodiesel Feedstock by Rhodococcus opacus

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wei, Zhen; Zeng, Guangming; Kosa, Matyas

2014-11-07

Light oil from pyrolysis, which accounts for ~10 % carbon yield of the starting biomass, is a complex aqueous product that is difficult to utilize and usually discarded. This work presents the feasibility of light oil as a sole carbon source to support the growth of Rhodococcus opacus (R. opacus) that in turn accumulate triacylglycerols as biodiesel feedstock. Two types of bacteria (R. opacus PD630 and DSM 1069) were selected in this study. Research results showed that after short adaption periods both strains can grow well on this complex carbon source, as proved by the consumption of oligomers and monomersmore » in light oil. Lipid content by R. opacus PD630 and DSM 1069 was observed up to 25.8 % and 22.0 % of cell dry weight, respectively. Palmitic and stearic acids were found to be the predominant fatty acids in these bacterial cells. In addition, the light oil-based lipid production can be enhanced by reducing the pH value from 7 to 4, especially in case of DSM 1069.« less

Simulation of Swap-Out Reliability For The Advance Photon Source Upgrade

DOE Office of Scientific and Technical Information (OSTI.GOV)

Borland, M.

2017-06-01

The proposed upgrade of the Advanced Photon Source (APS) to a multibend-achromat lattice relies on the use of swap-out injection to accommodate the small dynamic acceptance, allow use of unusual insertion devices, and minimize collective effects at high single-bunch charge. This, combined with the short beam lifetime, will make injector reliability even more important than it is for top-up operation. We used historical data for the APS injector complex to obtain probability distributions for injector up-time and down-time durations. Using these distributions, we simulated several years of swap-out operation for the upgraded lattice for several operatingmodes. The results indicate thatmore » obtaining very high availability of beam in the storage ring will require improvements to injector reliability.« less

RF synchronized short pulse laser ion source

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fuwa, Yasuhiro, E-mail: fuwa@kyticr.kuicr.kyoto-u.ac.jp; Iwashita, Yoshihisa; Tongu, Hiromu

A laser ion source that produces shortly bunched ion beam is proposed. In this ion source, ions are extracted immediately after the generation of laser plasma by an ultra-short pulse laser before its diffusion. The ions can be injected into radio frequency (RF) accelerating bucket of a subsequent accelerator. As a proof-of-principle experiment of the ion source, a RF resonator is prepared and H{sub 2} gas was ionized by a short pulse laser in the RF electric field in the resonator. As a result, bunched ions with 1.2 mA peak current and 5 ns pulse length were observed at themore » exit of RF resonator by a probe.« less

Source tagging modeling study of heavy haze episodes under complex regional transport processes over Wuhan megacity, Central China.

PubMed

Lu, Miaomiao; Tang, Xiao; Wang, Zifa; Gbaguidi, Alex; Liang, Shengwen; Hu, Ke; Wu, Lin; Wu, Huangjian; Huang, Zhen; Shen, Longjiao

2017-12-01

Wuhan as a megacity of Central China was suffering from severe particulate matter pollution according to previous observation studies, however, the mechanism behind the pollution formation especially the impact of regional chemical transport is still unclear. This study, carried out on the Nested Air Quality Prediction Modeling System (NAQPMS) coupled with an on-line source-tagging module, explores different roles regional transport had in two strong haze episodes over Wuhan in October 2014 and quantitatively assesses the contributions from local and regional sources to PM 2.5 concentration. Validation of predictions based on observations shows modeling system good skills in reproducing key meteorological and chemical features. The first short-time haze episode occurred on 12 October under strong northerly winds, with a hourly PM 2.5 peak of 180 μg m -3 , and was found to be caused primarily by the long-range transport from the northern regions, which contributed 60.6% of the episode's PM 2.5 concentration (versus a total of 32.7% from sources in and near Wuhan). The second episode lasted from the 15-20 October under stable regional large-scale synoptic conditions and weak winds, and had an hourly PM 2.5 peak of 231.0 μg m -3 . In this episode, both the long-distance transport from far regions and short-range transport from the Wuhan-cluster were the primary causes of the haze episode and account for 24.8% and 29.2% of the PM 2.5 concentration respectively. Therefore, regional transport acts as a crucial driver of haze pollution over Wuhan through not only long-range transfer of pollutants, but also short-range aerosol movement under specific meteorological conditions. The present findings highlight the important role of regional transport in urban haze formation and indicate that the joint control of multi city-clusters are needed to reduce the particulate pollution level in Wuhan. Copyright © 2017 Elsevier Ltd. All rights reserved.

Role and structural mechanism of WASP-triggered conformational changes in branched actin filament nucleation by Arp2/3 complex.

PubMed

Rodnick-Smith, Max; Luan, Qing; Liu, Su-Ling; Nolen, Brad J

2016-07-05

The Arp2/3 (Actin-related proteins 2/3) complex is activated by WASP (Wiskott-Aldrich syndrome protein) family proteins to nucleate branched actin filaments that are important for cellular motility. WASP recruits actin monomers to the complex and stimulates movement of Arp2 and Arp3 into a "short-pitch" conformation that mimics the arrangement of actin subunits within filaments. The relative contribution of these functions in Arp2/3 complex activation and the mechanism by which WASP stimulates the conformational change have been unknown. We purified budding yeast Arp2/3 complex held in or near the short-pitch conformation by an engineered covalent cross-link to determine if the WASP-induced conformational change is sufficient for activity. Remarkably, cross-linked Arp2/3 complex bypasses the need for WASP in activation and is more active than WASP-activated Arp2/3 complex. These data indicate that stimulation of the short-pitch conformation is the critical activating function of WASP and that monomer delivery is not a fundamental requirement for nucleation but is a specific requirement for WASP-mediated activation. During activation, WASP limits nucleation rates by releasing slowly from nascent branches. The cross-linked complex is inhibited by WASP's CA region, even though CA potently stimulates cross-linking, suggesting that slow WASP detachment masks the activating potential of the short-pitch conformational switch. We use structure-based mutations and WASP-Arp fusion chimeras to determine how WASP stimulates movement toward the short-pitch conformation. Our data indicate that WASP displaces the autoinhibitory Arp3 C-terminal tail from a hydrophobic groove at Arp3's barbed end to destabilize the inactive state, providing a mechanism by which WASP stimulates the short-pitch conformation and activates Arp2/3 complex.

Pesticides exposure assessment of kettleman city using the industrial source complex short-term model version 3.

PubMed

Tao, Jing; Barry, Terrell; Segawa, Randy; Neal, Rosemary; Tuli, Atac

2013-01-01

Kettleman City, California, reported a higher than expected number of birth defect cases between 2007 and 2010, raising the concern of community and government agencies. A pesticide exposure evaluation was conducted as part of a complete assessment of community chemical exposure. Nineteen pesticides that potentially cause birth defects were investigated. The Industrial Source Complex Short-Term Model Version 3 (ISCST3) was used to estimate off-site air concentrations associated with pesticide applications within 8 km of the community from late 2006 to 2009. The health screening levels were designed to indicate potential health effects and used for preliminary health evaluations of estimated air concentrations. A tiered approach was conducted. The first tier modeled simple, hypothetical worst-case situations for each of 19 pesticides. The second tier modeled specific applications of the pesticides with estimated concentrations exceeding health screening levels in the first tier. The pesticide use report database of the California Department of Pesticide Regulation provided application information. Weather input data were summarized from the measurements of a local weather station in the California Irrigation Management Information System. The ISCST3 modeling results showed that during the target period, only two application days of one pesticide (methyl isothiocyanate) produced air concentration estimates above the health screening level for developmental effects at the boundary of Kettleman City. These results suggest that the likelihood of birth defects caused by pesticide exposure was low. Copyright © by the American Society of Agronomy, Crop Science Society of America, and Soil Science Society of America, Inc.

Cognitive Illusions as Hindrances to Learning Complex Environmental Issues.

ERIC Educational Resources Information Center

Groves, Fred H.; Pugh, Ava F.

2002-01-01

Describes a study investigating the effects of short-term interventions on preservice elementary teachers' understanding of the topic of ozone depletion and whether complex issues can be dealt with successfully through short-term intervention. Reports that preservice teachers' understanding improved through a short-term intervention using a mix of…

Visual Short-Term Memory Capacity for Simple and Complex Objects

ERIC Educational Resources Information Center

Luria, Roy; Sessa, Paola; Gotler, Alex; Jolicoeur, Pierre; Dell'Acqua, Roberto

2010-01-01

Does the capacity of visual short-term memory (VSTM) depend on the complexity of the objects represented in memory? Although some previous findings indicated lower capacity for more complex stimuli, other results suggest that complexity effects arise during retrieval (due to errors in the comparison process with what is in memory) that is not…

Whose Story Is This? Discrepancy Triggers Readers' Attention to Source Information in Short Narratives

ERIC Educational Resources Information Center

Rouet, Jean-François; Le Bigot, Ludovic; de Pereyra, Guillaume; Britt, M. Anne

2016-01-01

Three experiments investigated the role of source information (i.e., who said what) in readers' comprehension of short informational texts. Based on the Discrepancy-Induced Source Comprehension assumption (Braasch, Rouet, Vibert, & Britt, 2012), we hypothesized that readers would be more likely to make use of source information when…

Using high-frequency sensors to identify hydroclimatological controls on storm-event variability in catchment nutrient fluxes and source zone activation

NASA Astrophysics Data System (ADS)

Blaen, Phillip; Khamis, Kieran; Lloyd, Charlotte; Krause, Stefan

2017-04-01

At the river catchment scale, storm events can drive highly variable behaviour in nutrient and water fluxes, yet short-term dynamics are frequently missed by low resolution sampling regimes. In addition, nutrient source contributions can vary significantly within and between storm events. Our inability to identify and characterise time dynamic source zone contributions severely hampers the adequate design of land use management practices in order to control nutrient exports from agricultural landscapes. Here, we utilise an 8-month high-frequency (hourly) time series of streamflow, nitrate concentration (NO3) and fluorescent dissolved organic matter concentration (FDOM) derived from optical in-situ sensors located in a headwater agricultural catchment. We characterised variability in flow and nutrient dynamics across 29 storm events. Storm events represented 31% of the time series and contributed disproportionately to nutrient loads (43% of NO3 and 36% of CDOM) relative to their duration. Principal components analysis of potential hydroclimatological controls on nutrient fluxes demonstrated that a small number of components, representing >90% of variance in the dataset, were highly significant model predictors of inter-event variability in catchment nutrient export. Hysteresis analysis of nutrient concentration-discharge relationships suggested spatially discrete source zones existed for NO3 and FDOM, and that activation of these zones varied on an event-specific basis. Our results highlight the benefits of high-frequency in-situ monitoring for characterising complex short-term nutrient dynamics and unravelling connections between hydroclimatological variability and river nutrient export and source zone activation under extreme flow conditions. These new process-based insights are fundamental to underpinning the development of targeted management measures to reduce nutrient loading of surface waters.

Clicking in shallow rivers: short-range echolocation of Irrawaddy and Ganges River dolphins in a shallow, acoustically complex habitat.

PubMed

Jensen, Frants H; Rocco, Alice; Mansur, Rubaiyat M; Smith, Brian D; Janik, Vincent M; Madsen, Peter T

2013-01-01

Toothed whales (Cetacea, odontoceti) use biosonar to navigate their environment and to find and catch prey. All studied toothed whale species have evolved highly directional, high-amplitude ultrasonic clicks suited for long-range echolocation of prey in open water. Little is known about the biosonar signals of toothed whale species inhabiting freshwater habitats such as endangered river dolphins. To address the evolutionary pressures shaping the echolocation signal parameters of non-marine toothed whales, we investigated the biosonar source parameters of Ganges river dolphins (Platanista gangetica gangetica) and Irrawaddy dolphins (Orcaella brevirostris) within the river systems of the Sundarban mangrove forest. Both Ganges and Irrawaddy dolphins produced echolocation clicks with a high repetition rate and low source level compared to marine species. Irrawaddy dolphins, inhabiting coastal and riverine habitats, produced a mean source level of 195 dB (max 203 dB) re 1 µPapp whereas Ganges river dolphins, living exclusively upriver, produced a mean source level of 184 dB (max 191) re 1 µPapp. These source levels are 1-2 orders of magnitude lower than those of similar sized marine delphinids and may reflect an adaptation to a shallow, acoustically complex freshwater habitat with high reverberation and acoustic clutter. The centroid frequency of Ganges river dolphin clicks are an octave lower than predicted from scaling, but with an estimated beamwidth comparable to that of porpoises. The unique bony maxillary crests found in the Platanista forehead may help achieve a higher directionality than expected using clicks nearly an octave lower than similar sized odontocetes.

Clicking in Shallow Rivers: Short-Range Echolocation of Irrawaddy and Ganges River Dolphins in a Shallow, Acoustically Complex Habitat

PubMed Central

Jensen, Frants H.; Rocco, Alice; Mansur, Rubaiyat M.; Smith, Brian D.; Janik, Vincent M.; Madsen, Peter T.

2013-01-01

Toothed whales (Cetacea, odontoceti) use biosonar to navigate their environment and to find and catch prey. All studied toothed whale species have evolved highly directional, high-amplitude ultrasonic clicks suited for long-range echolocation of prey in open water. Little is known about the biosonar signals of toothed whale species inhabiting freshwater habitats such as endangered river dolphins. To address the evolutionary pressures shaping the echolocation signal parameters of non-marine toothed whales, we investigated the biosonar source parameters of Ganges river dolphins (Platanista gangetica gangetica) and Irrawaddy dolphins (Orcaella brevirostris) within the river systems of the Sundarban mangrove forest. Both Ganges and Irrawaddy dolphins produced echolocation clicks with a high repetition rate and low source level compared to marine species. Irrawaddy dolphins, inhabiting coastal and riverine habitats, produced a mean source level of 195 dB (max 203 dB) re 1 µPapp whereas Ganges river dolphins, living exclusively upriver, produced a mean source level of 184 dB (max 191) re 1 µPapp. These source levels are 1–2 orders of magnitude lower than those of similar sized marine delphinids and may reflect an adaptation to a shallow, acoustically complex freshwater habitat with high reverberation and acoustic clutter. The centroid frequency of Ganges river dolphin clicks are an octave lower than predicted from scaling, but with an estimated beamwidth comparable to that of porpoises. The unique bony maxillary crests found in the Platanista forehead may help achieve a higher directionality than expected using clicks nearly an octave lower than similar sized odontocetes. PMID:23573197

Intercorrelation of P and Pn Recordings for the North Korean Nuclear Tests

NASA Astrophysics Data System (ADS)

Lay, T.; Voytan, D.; Ohman, J.

2017-12-01

The relative waveform analysis procedure called Intercorrelation is applied to Pn and P waveforms at regional and teleseismic distances, respectively, for the 5 underground nuclear tests at the North Korean nuclear test site. Intercorrelation is a waveform equalization procedure that parameterizes the effective source function for a given explosion, including the reduced velocity potential convolved with a simplified Green's function that accounts for the free surface reflections (pPn and pP), and possibly additional arrivals such as spall. The source function for one event is convolved with the signal at a given station for a second event, and the recording at the same station for the first event is convolved with the source function for the second event. This procedure eliminates the need to predict the complex receiver function effects at the station, which are typically not well-known for short-period response. The parameters of the source function representation are yield and burial depth, and an explosion source model is required. Here we use the Mueller-Murphy representation of the explosion reduced velocity potential, which explicitly depends on yield and burial depth. We then search over yield and burial depth ranges for both events, constrained by a priori information about reasonable ranges of parameters, to optimize the simultaneous match of multiple station signals for the two events. This procedure, applied to the apparently overburied North Korean nuclear tests (no indications of spall complexity), assuming simple free surface interactions (elastic reflection from a flat surface), provides excellent waveform equalization for all combinations of 5 nuclear tests.

Low-complexity DOA estimation from short data snapshots for ULA systems using the annihilating filter technique

NASA Astrophysics Data System (ADS)

Bellili, Faouzi; Amor, Souheib Ben; Affes, Sofiène; Ghrayeb, Ali

2017-12-01

This paper addresses the problem of DOA estimation using uniform linear array (ULA) antenna configurations. We propose a new low-cost method of multiple DOA estimation from very short data snapshots. The new estimator is based on the annihilating filter (AF) technique. It is non-data-aided (NDA) and does not impinge therefore on the whole throughput of the system. The noise components are assumed temporally and spatially white across the receiving antenna elements. The transmitted signals are also temporally and spatially white across the transmitting sources. The new method is compared in performance to the Cramér-Rao lower bound (CRLB), the root-MUSIC algorithm, the deterministic maximum likelihood estimator and another Bayesian method developed precisely for the single snapshot case. Simulations show that the new estimator performs well over a wide SNR range. Prominently, the main advantage of the new AF-based method is that it succeeds in accurately estimating the DOAs from short data snapshots and even from a single snapshot outperforming by far the state-of-the-art techniques both in DOA estimation accuracy and computational cost.

Plant Perception and Short-Term Responses to Phytophagous Insects and Mites.

PubMed

Santamaria, M Estrella; Arnaiz, Ana; Gonzalez-Melendi, Pablo; Martinez, Manuel; Diaz, Isabel

2018-05-03

Plant⁻pest relationships involve complex processes encompassing a network of molecules, signals, and regulators for overcoming defenses they develop against each other. Phytophagous arthropods identify plants mainly as a source of food. In turn, plants develop a variety of strategies to avoid damage and survive. The success of plant defenses depends on rapid and specific recognition of the phytophagous threat. Subsequently, plants trigger a cascade of short-term responses that eventually result in the production of a wide range of compounds with defense properties. This review deals with the main features involved in the interaction between plants and phytophagous insects and acari, focusing on early responses from the plant side. A general landscape of the diverse strategies employed by plants within the first hours after pest perception to block the capability of phytophagous insects to develop mechanisms of resistance is presented, with the potential of providing alternatives for pest control.

Degenerative meniscus: Pathogenesis, diagnosis, and treatment options

PubMed Central

Howell, Richard; Kumar, Neil S; Patel, Nimit; Tom, James

2014-01-01

The symptomatic degenerative meniscus continues to be a source of discomfort for a significant number of patients. With vascular penetration of less than one-third of the adult meniscus, healing potential in the setting of chronic degeneration remains low. Continued hoop and shear stresses upon the degenerative meniscus results in gross failure, often in the form of complex tears in the posterior horn and midbody. Patient history and physical examination are critical to determine the true source of pain, particularly with the significant incidence of simultaneous articular pathology. Joint line tenderness, a positive McMurray test, and mechanical catching or locking can be highly suggestive of a meniscal source of knee pain and dysfunction. Radiographs and magnetic resonance imaging are frequently utilized to examine for osteoarthritis and to verify the presence of meniscal tears, in addition to ruling out other sources of pain. Non-operative therapy focused on non-steroidal anti-inflammatory drugs and physical therapy may be able to provide pain relief as well as improve mechanical function of the knee joint. For patients refractory to conservative therapy, arthroscopic partial meniscectomy can provide short-term gains regarding pain relief, especially when combined with an effective, regular physiotherapy program. Patients with clear mechanical symptoms and meniscal pathology may benefit from arthroscopic partial meniscectomy, but surgery is not a guaranteed success, especially with concomitant articular pathology. Ultimately, the long-term outcomes of either treatment arm provide similar results for most patients. Further study is needed regarding the short and long-term outcomes regarding conservative and surgical therapy, with a particular focus on the economic impact of treatment as well. PMID:25405088

Accreting, highly magnetized neutron stars at the Eddington limit: a study of the 2016 outburst of SMC X-3

NASA Astrophysics Data System (ADS)

Koliopanos, Filippos; Vasilopoulos, Georgios

2018-06-01

Aims: We study the temporal and spectral characteristics of SMC X-3 during its recent (2016) outburst to probe accretion onto highly magnetized neutron stars (NSs) at the Eddington limit. Methods: We obtained XMM-Newton observations of SMC X-3 and combined them with long-term observations by Swift. We performed a detailed analysis of the temporal and spectral behavior of the source, as well as its short- and long-term evolution. We have also constructed a simple toy-model (based on robust theoretical predictions) in order to gain insight into the complex emission pattern of SMC X-3. Results: We confirm the pulse period of the system that has been derived by previous works and note that the pulse has a complex three-peak shape. We find that the pulsed emission is dominated by hard photons, while at energies below 1 keV, the emission does not pulsate. We furthermore find that the shape of the pulse profile and the short- and long-term evolution of the source light-curve can be explained by invoking a combination of a "fan" and a "polar" beam. The results of our temporal study are supported by our spectroscopic analysis, which reveals a two-component emission, comprised of a hard power law and a soft thermal component. We find that the latter produces the bulk of the non-pulsating emission and is most likely the result of reprocessing the primary hard emission by optically thick material that partly obscures the central source. We also detect strong emission lines from highly ionized metals. The strength of the emission lines strongly depends on the phase. Conclusions: Our findings are in agreement with previous works. The energy and temporal evolution as well as the shape of the pulse profile and the long-term spectra evolution of the source are consistent with the expected emission pattern of the accretion column in the super-critical regime, while the large reprocessing region is consistent with the analysis of previously studied X-ray pulsars observed at high accretion rates. This reprocessing region is consistent with recently proposed theoretical and observational works that suggested that highly magnetized NSs occupy a considerable fraction of ultraluminous X-ray sources.

Spiraling in Urban Streams: A Novel Approach to Link Geomorphic Structure with Ecosystem Function

NASA Astrophysics Data System (ADS)

Bean, R. A.; Lafrenz, M. D.

2011-12-01

The goal of this study is to quantify the relationship between channel complexity and nutrient spiraling along several reaches of an urbanized watershed in Portland, Oregon. Much research points to the effect urbanization has on watershed hydrology and nutrient loading at the watershed scale for various sized catchments. However the flux of nutrients over short reaches within a stream channel has been less studied because of the effort and costs associated with fieldwork and subsequent laboratory analysis of both surface and hyporheic water samples. In this study we explore a novel approach at capturing connectivity though nutrient spiraling along several short reaches (less than 100-meter) within the highly urbanized Fanno Creek watershed (4400 hectares). We measure channel complexity-sinuosity, bed material texture, organic matter-and use these measurements to determine spatial autocorrelation of 50 reaches in Fanno Creek, a small, urban watershed in Portland, Oregon. Using ion-selective electrodes, the fluxes of nitrate and ammonia are measured within each reach, which when combined with channel geometry and velocity measurements allow us to transform the values of nitrate and ammonia fluxes into spiraling metrics. Along each sampled reach, we collected three surface water samples to characterize nutrient amounts at the upstream, midstream, and downstream position of the reach. Two additional water samples were taken from the left and right bank hyporheic zones at a depth just below the armor layer of the channel bed using mini-piezometers and a hand-pumped vacuum device, which we constructed for this purpose. Adjacent to the hyporheic samples soil cores were collected and analyzed for organic matter composition, bulk density, and texture. We hypothesize that spiral metrics will respond significantly to the measured channel complexity values and will be a more robust predictor of nutrient flux than land cover characteristics in the area draining to each reach. Initial results show significant differences in hyporheic and surface water concentrations within the same reach indicating that sources and sinks of mineral nitrogen can be found within stream channels over very short distances. The implication of this study is that channel complexity is an important driver of nutrient flux in a watershed, and that this technique can be applied in future studies to better characterize the ecosystem services of stream channels over short reaches to entire catchments.

Identifying the TeV gamma-ray source MGRO J2228+61, FINALLY!

NASA Astrophysics Data System (ADS)

Aliu, Ester

2012-09-01

New VERITAS observations of MGRO J2228+61 allow us to associate its TeV emission with the enigmatic radio supernova remnant SNR G106.3+2.7. This remnant is part of a large complex that includes the Boomerang pulsar and nebula. The reduced field suggests that the TeV emission is not powered by the Boomerang, but instead associated with a much larger remnant. A recent SUZAKU X-ray observation of the smaller gamma-ray error box reveals two possible pulsar candidates. We propose short ACIS exposures to identify these sources to determine if one or both can be responsible for the gamma-ray emission. This will allow us to address the long standing problem on the nature of both MGRO J2228+61 and SNR G106.3+2.7.

Estimates of ground level TSP, SO sub 2 and HCI for a municipal waste incinerator to be located at Tynes Bay - Bermuda

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kent Simmons, J.A.; Knap, A.H.

1991-04-01

The computer model Industrial Source Complex Short Term (ISCST) was used to study the stack emissions from a refuse incinerator proposed for the inland of Bermuda. The model predicts that the highest ground level pollutant concentrations will occur near Prospect, 800 m to 1,000 m due south of the stack. The authors installed a portable laboratory and instruments at Prospect to begin making air quality baseline measurements. By comparing the model's estimates of the incinerator contribution to the background levels measured at the site they predicted that stack emissions would not cause an increase in TSP or SO{sub 2}. Themore » incinerator will be a significant source of HCI to Bermuda air with ambient levels approaching air quality guidelines.« less

Dual binding mode in cohesin-dockerin complexes as assessed through stretching studies

NASA Astrophysics Data System (ADS)

Wojciechowski, Michał; Cieplak, Marek

2016-10-01

A recent experimental study by Jobst et al. of stretching of a wild-type (WT) cohesin-dockerin complex has identified two kinds of the force-displacement patterns, with a single or double-peaked final rupture, which are termed "short" and "long" here. This duality has been interpreted as arising from the existence of two kinds of binding. Here, we analyze the separation of two cohesin-dockerin complexes of C. thermocellum theoretically. We use a coarse-grained structure-based model and the values of the pulling speeds are nearly experimental. In their native states, the two systems differ in the mutual binding orientations of the molecules in the complex. We demonstrate that the WT complex (PDB:1OHZ) unravels along two possible pathways that are qualitatively consistent with the presence of the short and long patterns observed experimentally. On the other hand, the mutated complex (PDB:2CCL) leads only to short trajectories. The short and long stretching pathways also appear in the cohesin-dockerin-Xmodule complex (PDB:4IU3, WT) of R. flavefaciens. Thus the duality in the stretching patterns need not be necessarily due to the duality in binding.

Role and structural mechanism of WASP-triggered conformational changes in branched actin filament nucleation by Arp2/3 complex

PubMed Central

Rodnick-Smith, Max; Luan, Qing; Liu, Su-Ling; Nolen, Brad J.

2016-01-01

The Arp2/3 (Actin-related proteins 2/3) complex is activated by WASP (Wiskott–Aldrich syndrome protein) family proteins to nucleate branched actin filaments that are important for cellular motility. WASP recruits actin monomers to the complex and stimulates movement of Arp2 and Arp3 into a “short-pitch” conformation that mimics the arrangement of actin subunits within filaments. The relative contribution of these functions in Arp2/3 complex activation and the mechanism by which WASP stimulates the conformational change have been unknown. We purified budding yeast Arp2/3 complex held in or near the short-pitch conformation by an engineered covalent cross-link to determine if the WASP-induced conformational change is sufficient for activity. Remarkably, cross-linked Arp2/3 complex bypasses the need for WASP in activation and is more active than WASP-activated Arp2/3 complex. These data indicate that stimulation of the short-pitch conformation is the critical activating function of WASP and that monomer delivery is not a fundamental requirement for nucleation but is a specific requirement for WASP-mediated activation. During activation, WASP limits nucleation rates by releasing slowly from nascent branches. The cross-linked complex is inhibited by WASP’s CA region, even though CA potently stimulates cross-linking, suggesting that slow WASP detachment masks the activating potential of the short-pitch conformational switch. We use structure-based mutations and WASP–Arp fusion chimeras to determine how WASP stimulates movement toward the short-pitch conformation. Our data indicate that WASP displaces the autoinhibitory Arp3 C-terminal tail from a hydrophobic groove at Arp3′s barbed end to destabilize the inactive state, providing a mechanism by which WASP stimulates the short-pitch conformation and activates Arp2/3 complex. PMID:27325766

Defocusing complex short-pulse equation and its multi-dark-soliton solution.

PubMed

Feng, Bao-Feng; Ling, Liming; Zhu, Zuonong

2016-05-01

In this paper, we propose a complex short-pulse equation of both focusing and defocusing types, which governs the propagation of ultrashort pulses in nonlinear optical fibers. It can be viewed as an analog of the nonlinear Schrödinger (NLS) equation in the ultrashort-pulse regime. Furthermore, we construct the multi-dark-soliton solution for the defocusing complex short-pulse equation through the Darboux transformation and reciprocal (hodograph) transformation. One- and two-dark-soliton solutions are given explicitly, whose properties and dynamics are analyzed and illustrated.

Bioavailability of organic and inorganic phosphates adsorbed on short-range ordered aluminum precipitate.

PubMed

Shang, C; Caldwell, D E; Stewart, J W; Tiessen, H; Huang, P M

1996-01-01

A nonreductive community-level study of P availability was conducted using various forms of adsorbed P. Orthophosphate (Pi), inositol hexaphosphate (IHP), and glucose 6-phosphate (G6P) were adsorbed to a short-range ordered Al precipitate. These bound phosphates provided a P source sufficient to support the growth of microbial communities from acidic Brazilian soils (oxisols). Adsorbed IHP, the most abundant form of organic phosphate in most soils, had the lowest bioavailability among the three phosphates studied. Adsorbed G6P and Pi were almost equally available. The amount of adsorbed Pi (1 cmol P kg(-1)) required to support microbial growth was at least 30 times less than that of IHP (30 cmol P kg(-1)). With increased surface coverage, adsorbed IHP became more bioavailable. This availability was attributed to a change in the structure of surface complexes and presumably resulted from the decreased number of high-affinity surface sites remaining at high levels of coverage. It thus appears that the bioavailability of various forms of adsorbed phosphate was determined primarily by the stability of the phosphate-surface complexes that they formed, rather than by the total amount of phosphate adsorbed. IHP, having the potential to form stable multiple-ring complexes, had the highest surface affinity and the lowest bioavailability. Bioaggregates consisting of bacteria and Al precipitate were observed and may be necessary for effective release of adsorbed P. Bacteria in the genera Enterobacter and Pseudomonas were the predominate organisms selected during these P-limited enrichments.

Volcanic deformation of Atosanupuri volcanic complex in the Kussharo caldera, Japan, from 1993 to 2016 revealed by JERS-1, ALOS, and ALOS-2 radar interferometry

NASA Astrophysics Data System (ADS)

Fujiwara, Satoshi; Murakami, Makoto; Nishimura, Takuya; Tobita, Mikio; Yarai, Hiroshi; Kobayashi, Tomokazu

2017-06-01

A series of uplifts and subsidences of a volcanic complex in the Kussharo caldera in eastern Hokkaido (Japan) has been revealed by interferometric analysis using archived satellite synthetic aperture radar data. A time series of interferograms from 1993 to 1998 showed the temporal evolution of a ground deformation process. The horizontal dimension of the deformation field was about 10 km in diameter, and the maximum amplitude of the deformation was >20 cm. Uplift started in 1994, and concurrent earthquake swarm activity was observed around the uplift area; however, no other phenomena were observed during this period. A subsidence process then followed, with the shape of the deformation forming a mirror image of the uplift. Model simulations suggest deformation was caused by a source at the depth of about 6 km and that the position of the source remained static throughout the episode. Subsidence of the volcanic complex was also observed by another satellite from 2007 to 2010, and likely continued for more than 10 years. In addition to the main uplift-subsidence sequence, small deformation patterns with short spatial wavelengths were observed at the center of the deforming area. Data from three satellites recorded small-scale subsidence of the Atosanupuri and Rishiri lava domes at a constant rate of approx. 1 cm/year from 1993 to 2016.[Figure not available: see fulltext.

How genome complexity can explain the difficulty of aligning reads to genomes.

PubMed

Phan, Vinhthuy; Gao, Shanshan; Tran, Quang; Vo, Nam S

2015-01-01

Although it is frequently observed that aligning short reads to genomes becomes harder if they contain complex repeat patterns, there has not been much effort to quantify the relationship between complexity of genomes and difficulty of short-read alignment. Existing measures of sequence complexity seem unsuitable for the understanding and quantification of this relationship. We investigated several measures of complexity and found that length-sensitive measures of complexity had the highest correlation to accuracy of alignment. In particular, the rate of distinct substrings of length k, where k is similar to the read length, correlated very highly to alignment performance in terms of precision and recall. We showed how to compute this measure efficiently in linear time, making it useful in practice to estimate quickly the difficulty of alignment for new genomes without having to align reads to them first. We showed how the length-sensitive measures could provide additional information for choosing aligners that would align consistently accurately on new genomes. We formally established a connection between genome complexity and the accuracy of short-read aligners. The relationship between genome complexity and alignment accuracy provides additional useful information for selecting suitable aligners for new genomes. Further, this work suggests that the complexity of genomes sometimes should be thought of in terms of specific computational problems, such as the alignment of short reads to genomes.

Intermittent tremor migrations beneath Guerrero, Mexico, and implications for fault healing within the slow slip zone

NASA Astrophysics Data System (ADS)

Peng, Yajun; Rubin, Allan M.

2017-01-01

Slow slip events exhibit significant complexity in slip evolution and variations in recurrence intervals. Behavior that varies systematically with recurrence interval is likely to reflect different extents of fault healing between these events. Here we use high-resolution tremor catalogs beneath Guerrero, Mexico, to investigate the mechanics of slow slip. We observe complex tremor propagation styles, including rapid tremor migrations propagating either along the main tremor front or backward, reminiscent of those in northern Cascadia. We also find many migrations that originate well behind the front and repeatedly occupy the same source region during a tremor episode, similar to those previously reported from Shikoku, Japan. These migrations could be driven by slow slip in the surrounding regions, with recurrence intervals possibly modulated by tides. The propagation speed of these migrations decreases systematically with time since the previous migration over the same source area. Tremor amplitudes seem consistent with changes in the propagation speeds being controlled primarily by changes in the slip speeds. One interpretation is that the high propagation speeds and inferred high slip speeds during the migrations with short recurrence intervals are caused by incomplete healing within the host rock adjacent to the shear zone, which could lead to high permeability and reduced dilatant strengthening of the fault gouge. Similar processes may operate in other slow slip source regions such as Cascadia.

Short Pulse High Brightness X-ray Production with the PLEIADES Thomson Scattering Source

DOE Office of Scientific and Technical Information (OSTI.GOV)

Anderson, S G; Barty, C P J; Betts, S M

2003-07-01

We describe PLEIADES, a compact, tunable, high-brightness, ultra-short pulse, Thomson x-ray source. The peak brightness of the source is expected to exceed 10{sup 20} photons/s/0.1% bandwidth/mm{sup 2}/mrad{sup 2}. Initial results are reported and compared to theoretical calculations.

Short haul air passenger data sources in the United States

NASA Technical Reports Server (NTRS)

Al-Kazily, J.; Gosling, G.; Horonjeff, R.

1977-01-01

The sources and characteristics of existing data on short haul air passenger traffic in the United States domestic air market are described along with data availability, processing, and costs. Reference is made to data derived from aircraft operations since these data can be used to insure that no short haul operators are omitted during the process of assembling passenger data.

Ambient Air Pollution and Increases in Blood Pressure: Role ...

EPA Pesticide Factsheets

Particulate matter (PM) is a complex mixture of extremely small particles and liquid droplets made up of a number of components including elemental carbon, organic chemicals, metals, acids (such as nitrates and sulfates), and soil and dust particles. Epidemiological studies consistently show that exposure to PM in urban areas across the globe is associated with increases in short- and long-term cardiovascular mortality and morbidity, most notably for myocardial infarction, heart failure and ischemic stroke.1 The range in strength of these associations is likely related to variation in PM sources and composition across space and time, and attests to the need to understand the contribution of specific sources to ultimately inform regulatory, public health and clinical strategies to reduce risk. Commentary: In 2014 a systematic review and meta-analysis published in this journal reported a positive association between short-term exposure to PM2.5 and blood pressure.2 The paper discussed potential mechanisms including PM-induced activation of pulmonary nociceptive receptors, pulmonary inflammatory responses and release of endothelin-1, and suggested that activation of pulmonary receptors and vagal afferents could lead to shifts in autonomic balance and vasoconstriction. Other effects including oxidative stress and decreased NO availability, as well as systemic inflammation and endothelial dysfunction have also been widely reported in association with PM compo

Brief Report: Effect of Spatial Complexity on Visual Short-Term Memory and Self-Reported Autistic-Like Traits in Typically Developed Individuals

ERIC Educational Resources Information Center

Takahashi, Junichi; Gyoba, Jiro; Yamawaki, Nozomi

2013-01-01

This report examines effects of the spatial complexity of configurations on visual short-term memory (VSTM) capacity for individuals from the general population differing on autism-spectrum quotient (AQ) scores. During each trial, nine-line segments with various orientations were arrayed in simple or complex configurations and presented in both…

Matter under extreme conditions experiments at the Linac Coherent Light Source

DOE PAGES

Glenzer, S. H.; Fletcher, L. B.; Galtier, E.; ...

2015-12-10

The Matter in Extreme Conditions end station at the Linac Coherent Light Source (LCLS) is a new tool enabling accurate pump-probe measurements for studying the physical properties of matter in the high-energy density physics regime. This instrument combines the world’s brightest x-ray source, the LCLS x-ray beam, with high-power lasers consisting of two nanosecond Nd:glass laser beams and one short-pulse Ti:sapphire laser. These lasers produce short-lived states of matter with high pressures, high temperatures or high densities with properties that are important for applications in nuclear fusion research, laboratory astrophysics and the development of intense radiation sources. In the firstmore » experiments, we have performed highly accurate x-ray diffraction and x-ray Thomson scattering techniques on shock-compressed matter resolving the transition from compressed solid matter to a co-existence regime and into the warm dense matter state. Furthermore, these complex charged-particle systems are dominated by strong correlations and quantum effects. They exist in planetary interiors and laboratory experiments, e.g., during high-power laser interactions with solids or the compression phase of inertial confinement fusion implosions. Applying record peak brightness X rays resolves the ionic interactions at atomic (Ångstrom) scale lengths and measure the static structure factor, which is a key quantity for determining equation of state data and important transport coefficients. Simultaneously, spectrally resolved measurements of plasmon features provide dynamic structure factor information that yield temperature and density with unprecedented precision at micron-scale resolution in dynamic compression experiments. This set of studies demonstrates our ability to measure fundamental thermodynamic properties that determine the state of matter in the high-energy density physics regime.« less

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bogacz, Alex

We summarize the current state of a concept for muon acceleration aimed at a future Neutrino Factory and extendable to Higgs Factory. The main thrust of these studies was to reduce the overall cost while maintaining performance by exploring the interplay between the complexity of the cooling systems and the acceptance of the accelerator complex. To ensure adequate survival for the short-lived muons, acceleration must occur at high average gradient. The need for large transverse and longitudinal acceptances drives the design of the acceleration system to an initially low RF frequency, e.g., 325 MHz, which is then increased to 650more » MHz as the transverse size shrinks with increasing energy. High-gradient normal conducting RF cavities at these frequencies require extremely high peak-power RF sources. Hence superconducting RF (SRF) cavities are chosen. We consider an SRF-efficient design based on a multi-pass (4.5) ?dogbone? RLA, extendable to multi-pass FFAG-like arcs.« less

Unit with Fluidized Bed for Gas-Vapor Activation of Different Carbonaceous Materials for Various Purposes: Design, Computation, Implementation.

PubMed

Strativnov, Eugene

2017-12-01

We propose the technology of obtaining the promising material with wide specter of application-activated nanostructured carbon. In terms of technical indicators, it will stand next to the materials produced by complex regulations with the use of costly chemical operations. It can be used for the following needs: as a sorbent for hemosorption and enterosorption, for creation of the newest source of electric current (lithium and zinc air batteries, supercapacitors), and for processes of short-cycle adsorption gas separation.In this study, the author gives recommendations concerning the design of the apparatus with fluidized bed and examples of calculation of specific devices. The whole given information can be used as guidelines for the design of energy effective aggregates. Calculation and design of the reactor were carried out using modern software complexes (ANSYS and SolidWorks).

SON and its alternatively spliced isoforms control MLL complex-mediated H3K4me3 and transcription of leukemia-associated genes

PubMed Central

Kim, Jung-Hyun; Baddoo, Melody C.; Park, Eun Young; Stone, Joshua K.; Park, Hyeonsoo; Butler, Thomas W.; Huang, Gang; Yan, Xiaomei; Pauli-Behn, Florencia; Myers, Richard M.; Tan, Ming; Flemington, Erik K.; Lim, Ssang-Taek; Erin Ahn, Eun-Young

2016-01-01

SUMMARY Dysregulation of MLL complex-mediated histone methylation plays a pivotal role in gene expression associated with diseases, but little is known about cellular factors modulating MLL complex activity. Here, we report that SON, previously known as an RNA splicing factor, controls MLL complex-mediated transcriptional initiation. SON binds to DNA near transcription start sites, interacts with menin, and inhibits MLL complex assembly, resulting in decreased H3K4me3 and transcriptional repression. Importantly, alternatively spliced short isoforms of SON are markedly upregulated in acute myeloid leukemia. The short isoforms compete with full-length SON for chromatin occupancy, but lack the menin-binding ability, thereby antagonizing full-length SON function in transcriptional repression while not impairing full-length SON-mediated RNA splicing. Furthermore, overexpression of a short isoform of SON enhances replating potential of hematopoietic progenitors. Our findings define SON as a fine-tuner of the MLL-menin interaction and reveal short SON overexpression as a marker indicating aberrant transcriptional initiation in leukemia. PMID:26990989

Butyric acid in irritable bowel syndrome.

PubMed

Załęski, Andrzej; Banaszkiewicz, Aleksandra; Walkowiak, Jarosław

2013-01-01

Butyric acid (butanoic acid) belongs to a group of short-chain fatty acids and is thought to play several beneficial roles in the gastrointestinal tract. Butyric anion is easily absorbed by enteric cells and used as a main source of energy. Moreover, butyric acid is an important regulator of colonocyte proliferation and apoptosis, gastrointestinal tract motility and bacterial microflora composition in addition to its involvement in many other processes including immunoregulation and anti-inflammatory activity. The pathogenesis of irritable bowel syndrome (IBS), the most commonly diagnosed functional gastrointestinal condition, is complex, and its precise mechanisms are still unclear. This article describes the potential benefits of butyric acid in IBS.

Genetically improved BarraCUDA.

PubMed

Langdon, W B; Lam, Brian Yee Hong

2017-01-01

BarraCUDA is an open source C program which uses the BWA algorithm in parallel with nVidia CUDA to align short next generation DNA sequences against a reference genome. Recently its source code was optimised using "Genetic Improvement". The genetically improved (GI) code is up to three times faster on short paired end reads from The 1000 Genomes Project and 60% more accurate on a short BioPlanet.com GCAT alignment benchmark. GPGPU BarraCUDA running on a single K80 Tesla GPU can align short paired end nextGen sequences up to ten times faster than bwa on a 12 core server. The speed up was such that the GI version was adopted and has been regularly downloaded from SourceForge for more than 12 months.

Utilizing Tritium and CFC-12 to Determine Groundwater Sources in an Unconfined Aquifer Within the Abalone Cove Landslide, Palos Verdes, California

NASA Astrophysics Data System (ADS)

Difilippo, E. L.; Hammond, D. E.; Douglas, R.; Clark, J. F.; Avisar, D.; Dunker, R.

2004-12-01

The Abalone Cove landslide occupies 80 acres of an ancient landslide complex on the Palos Verdes peninsula, and was re-activated in 1979. The uphill portion of the ancient landslide complex has remained stable in historic times. Water infiltration into the slide is a short term catalyst for mass movement in the area, so it is important to determine the sources of groundwater throughout the slide mass. Water may enter the slide mass through direct percolation of recent precipitation, inflow along the head scarp of the ancient landslide or by rising through the slide plane from a deeper aquifer. The objective of this contribution is to use geochemical tracers (tritium and CFC-12) in combination with numerical modeling to constrain the importance of each of these sources. Numerical models were constructed to predict geochemical tracer concentrations throughout the basin, assuming that the only source of water to the slide mass is percolation of recent precipitation. Predicted concentrations were then compared to measured tracer values. In the ancient landslide, predicted and measured tracer concentrations are in good agreement, indicating that most of the water in this area is recent precipitation falling within the basin. Groundwater recharged uphill of the ancient landslide contributes minor flow into the complex through the head scarp, with the majority of this water flowing beneath the ancient slide plane. However, predicted tracer concentrations in the toe of the Abalone Cove landslide are not consistent with measured values. Both CFC-12 and tritium concentrations indicate that water is older than predicted and communication between the slide mass and the aquifer beneath the slide plane must occur in this area. Infiltration of this deep circulating water may exert upward hydraulic pressure on the landslide slip surface, increasing the potential for movement. This hypothesis is consistent with the observation that current movement is only occurring in the area in which tracers indicate communication with the deeper aquifer.

Short-"a" in the Sixth Borough: A Sociophonetic Analysis of A Complex Phonological System in Jersey City

ERIC Educational Resources Information Center

Coggshall, Elizabeth Learn

2017-01-01

The study of short-"a" (e.g., the vowel in words such as "bat," "bad," "bang," "ban") in New York City English (NYCE) has a long history, and with many different descriptions of this complex system (e.g., Babbitt 1896; Trager 1930; Labov 1966/2006; Cohen 1970; Labov 2007). It is complex due to the…

Evidence for Holocene centennial variability in sea ice cover based on IP25 biomarker reconstruction in the southern Kara Sea (Arctic Ocean)

NASA Astrophysics Data System (ADS)

Hörner, Tanja; Stein, Rüdiger; Fahl, Kirsten

2017-10-01

The Holocene is characterized by the late Holocene cooling trend as well as by internal short-term centennial fluctuations. Because Arctic sea ice acts as a significant component (amplifier) within the climate system, investigating its past long- and short-term variability and controlling processes is beneficial for future climate predictions. This study presents the first biomarker-based (IP25 and PIP25) sea ice reconstruction from the Kara Sea (core BP00-07/7), covering the last 8 ka. These biomarker proxies reflect conspicuous short-term sea ice variability during the last 6.5 ka that is identified unprecedentedly in the source region of Arctic sea ice by means of a direct sea ice indicator. Prominent peaks of extensive sea ice cover occurred at 3, 2, 1.3 and 0.3 ka. Spectral analysis of the IP25 record revealed 400- and 950-year cycles. These periodicities may be related to the Arctic/North Atlantic Oscillation, but probably also to internal climate system fluctuations. This demonstrates that sea ice belongs to a complex system that more likely depends on multiple internal forcing.

Relevance analysis and short-term prediction of PM2.5 concentrations in Beijing based on multi-source data

NASA Astrophysics Data System (ADS)

Ni, X. Y.; Huang, H.; Du, W. P.

2017-02-01

The PM2.5 problem is proving to be a major public crisis and is of great public-concern requiring an urgent response. Information about, and prediction of PM2.5 from the perspective of atmospheric dynamic theory is still limited due to the complexity of the formation and development of PM2.5. In this paper, we attempted to realize the relevance analysis and short-term prediction of PM2.5 concentrations in Beijing, China, using multi-source data mining. A correlation analysis model of PM2.5 to physical data (meteorological data, including regional average rainfall, daily mean temperature, average relative humidity, average wind speed, maximum wind speed, and other pollutant concentration data, including CO, NO2, SO2, PM10) and social media data (microblog data) was proposed, based on the Multivariate Statistical Analysis method. The study found that during these factors, the value of average wind speed, the concentrations of CO, NO2, PM10, and the daily number of microblog entries with key words 'Beijing; Air pollution' show high mathematical correlation with PM2.5 concentrations. The correlation analysis was further studied based on a big data's machine learning model- Back Propagation Neural Network (hereinafter referred to as BPNN) model. It was found that the BPNN method performs better in correlation mining. Finally, an Autoregressive Integrated Moving Average (hereinafter referred to as ARIMA) Time Series model was applied in this paper to explore the prediction of PM2.5 in the short-term time series. The predicted results were in good agreement with the observed data. This study is useful for helping realize real-time monitoring, analysis and pre-warning of PM2.5 and it also helps to broaden the application of big data and the multi-source data mining methods.

Occurrences, sources and risk assessment of short- and medium-chain chlorinated paraffins in sediments from the middle reaches of the Yellow River, China.

PubMed

Qiao, Lin; Xia, Dan; Gao, Lirong; Huang, Huiting; Zheng, Minghui

2016-12-01

Chlorinated paraffins (CPs), one class of hydrophobic and toxic compounds, are easily adsorbed into sediments and then pose potential risks to the ecosystem and human health. However, few researches on short- and medium-chain CPs (SCCPs and MCCPs) in sediments have been performed. In order to comprehensively investigate the spatial distributions, sources, and ecological risks of CPs, sediments collected from the middle reaches of the Yellow River were analyzed by two-dimensional gas chromatography coupled with time-of-flight mass spectrometry (GC × GC-TOFMS). The concentrations of SCCPs and MCCPs ranged from 11.6 to 9.76 × 10 3  ng/g dry weight (dw) and from 8.33 to 168 ng/g dw, respectively. No significant correlation was found between total organic carbon (TOC) and CP concentrations (P > 0.05). The spatial distributions showed that contamination levels of CPs were relevant to human activities. In addition, two types of sediment samples were classified by hierarchical cluster analysis (HCA) and results indicated the predominant congener groups were C 10 Cl 6-7 for SCCPs and C 14 Cl 7-8 for MCCPs. Principal component analysis (PCA) revealed that SCCPs and MCCPs in the sediments may have different sources, and SCCPs are likely to come from the production and use of CP-42 and CP-52. Moreover, complex environmental processes, including long-range transportation via the atmosphere and/or river, deposition and degradation of CPs, resulted in increased abundances of short chain and low chlorinated congeners in sediment samples compared with commercial mixtures, and different homolog patterns among samples. The significant negative correlation between SCCP concentrations and MCCP/SCCP ratios could be related to long-range transport of CPs. A preliminary risk assessment indicated that CPs at current levels posed no significant ecological risk. Copyright © 2016 Elsevier Ltd. All rights reserved.

Modeling Events in the Lower Imperial Valley Basin

NASA Astrophysics Data System (ADS)

Tian, X.; Wei, S.; Zhan, Z.; Fielding, E. J.; Helmberger, D. V.

2010-12-01

The Imperial Valley below the US-Mexican border has few seismic stations but many significant earthquakes. Many of these events, such as the recent El Mayor-Cucapah event, have complex mechanisms involving a mixture of strike-slip and normal slip patterns with now over 30 aftershocks with magnitude over 4.5. Unfortunately, many earthquake records from the Southern Imperial Valley display a great deal of complexity, ie., strong Rayleigh wave multipathing and extended codas. In short, regional recordings in the US are too complex to easily separate source properties from complex propagation. Fortunately, the Dec 30 foreshock (Mw=5.9) has excellent recordings teleseismically and regionally, and moreover is observed with InSAR. We use this simple strike-slip event to calibrate paths. In particular, we are finding record segments involving Pnl (including depth phases) and some surface waves (mostly Love waves) that appear well behaved, ie., can be approximated by synthetics from 1D local models and events modeled with the Cut-and-Paste (CAP) routine. Simple events can then be identified along with path calibration. Modeling the more complicated paths can be started with known mechanisms. We will report on both the aftershocks and historic events.

Effect of source location and listener location on ILD cues in a reverberant room

NASA Astrophysics Data System (ADS)

Ihlefeld, Antje; Shinn-Cunningham, Barbara G.

2004-05-01

Short-term interaural level differences (ILDs) were analyzed for simulations of the signals that would reach a listener in a reverberant room. White noise was convolved with manikin head-related impulse responses measured in a classroom to simulate different locations of the source relative to the manikin and different manikin positions in the room. The ILDs of the signals were computed within each third-octave band over a relatively short time window to investigate how reliably ILD cues encode source laterality. Overall, the mean of the ILD magnitude increases with lateral angle and decreases with distance, as expected. Increasing reverberation decreases the mean ILD magnitude and increases the variance of the short-term ILD, so that the spatial information carried by ILD cues is degraded by reverberation. These results suggest that the mean ILD is not a reliable cue for determining source laterality in a reverberant room. However, by taking into account both the mean and variance, the distribution of high-frequency short-term ILDs provides some spatial information. This analysis suggests that, in order to use ILDs to judge source direction in reverberant space, listeners must accumulate information about how the short-term ILD varies over time. [Work supported by NIDCD and AFOSR.

Short-Range Temporal Interactions in Sleep; Hippocampal Spike Avalanches Support a Large Milieu of Sequential Activity Including Replay

PubMed Central

Mahoney, J. Matthew; Titiz, Ali S.; Hernan, Amanda E.; Scott, Rod C.

2016-01-01

Hippocampal neural systems consolidate multiple complex behaviors into memory. However, the temporal structure of neural firing supporting complex memory consolidation is unknown. Replay of hippocampal place cells during sleep supports the view that a simple repetitive behavior modifies sleep firing dynamics, but does not explain how multiple episodes could be integrated into associative networks for recollection during future cognition. Here we decode sequential firing structure within spike avalanches of all pyramidal cells recorded in sleeping rats after running in a circular track. We find that short sequences that combine into multiple long sequences capture the majority of the sequential structure during sleep, including replay of hippocampal place cells. The ensemble, however, is not optimized for maximally producing the behavior-enriched episode. Thus behavioral programming of sequential correlations occurs at the level of short-range interactions, not whole behavioral sequences and these short sequences are assembled into a large and complex milieu that could support complex memory consolidation. PMID:26866597

Mapping algorithm for freeform construction using non-ideal light sources

NASA Astrophysics Data System (ADS)

Li, Chen; Michaelis, D.; Schreiber, P.; Dick, L.; Bräuer, A.

2015-09-01

Using conventional mapping algorithms for the construction of illumination freeform optics' arbitrary target pattern can be obtained for idealized sources, e.g. collimated light or point sources. Each freeform surface element generates an image point at the target and the light intensity of an image point is corresponding to the area of the freeform surface element who generates the image point. For sources with a pronounced extension and ray divergence, e.g. an LED with a small source-freeform-distance, the image points are blurred and the blurred patterns might be different between different points. Besides, due to Fresnel losses and vignetting, the relationship between light intensity of image points and area of freeform surface elements becomes complicated. These individual light distributions of each freeform element are taken into account in a mapping algorithm. To this end the method of steepest decent procedures are used to adapt the mapping goal. A structured target pattern for a optics system with an ideal source is computed applying corresponding linear optimization matrices. Special weighting factor and smoothing factor are included in the procedures to achieve certain edge conditions and to ensure the manufacturability of the freefrom surface. The corresponding linear optimization matrices, which are the lighting distribution patterns of each of the freeform surface elements, are gained by conventional raytracing with a realistic source. Nontrivial source geometries, like LED-irregularities due to bonding or source fine structures, and a complex ray divergence behavior can be easily considered. Additionally, Fresnel losses, vignetting and even stray light are taken into account. After optimization iterations, with a realistic source, the initial mapping goal can be achieved by the optics system providing a structured target pattern with an ideal source. The algorithm is applied to several design examples. A few simple tasks are presented to discussed the ability and limitation of the this mothed. It is also presented that a homogeneous LED-illumination system design, in where, with a strongly tilted incident direction, a homogeneous distribution is achieved with a rather compact optics system and short working distance applying a relatively large LED source. It is shown that the lighting distribution patterns from the freeform surface elements can be significantly different from the others. The generation of a structured target pattern, applying weighting factor and smoothing factor, are discussed. Finally, freeform designs for much more complex sources like clusters of LED-sources are presented.

Studying the influence of strong meteorological disturbances in the Earth's lower atmosphere on variations of ionospheric parameters in the Asian region of Russia

NASA Astrophysics Data System (ADS)

Chernigovskaya, Marina; Kurkin, Vladimir; Orlov, Igor; Oinats, Alexey; Sharkov, Eugenii

2010-05-01

Short-period temporal variations of ionospheric parameters were analyzed to study probabilities of manifestation of strong meteorological disturbances in the Earth's lower atmosphere in variations of upper atmosphere parameters in a zone far removed from a disturbance source. In the analysis, we used data on maximum observed frequencies (MOF) of oblique sounding (OS) signals along Norilsk-Irkutsk, Magadan-Irkutsk, and Khabarovsk-Irkutsk paths in East Siberia and the Far East. These data were obtained during solar minimum at equinoxes (March, September) in 2008-2009. Analyzing effects of wave disturbances in ionospheric parameters, we take into account helio-geomagnetic and meteorological conditions in regions under study to do an effective separation between disturbances associated with magnetospheric-ionospheric coupling and those induced by the influence of the lower atmosphere on the upper one. The frequency analysis we conducted revealed time intervals with higher intensity of short-period oscillations which may have been interpreted as manifestation of large-scale traveling ionospheric disturbances (TIDs) whose sources were internal gravity waves (IGWs) with periods of 1-5 hours. The complex analysis of helio-geomagnetic, ionospheric, and atmospheric data as well as data on tropical cyclones established that the detected TIDs were unrelated to helio-geomagnetic disturbances (2008-2009 exhibited solar minimum and quiet geomagnetic conditions). The analysis of other potential sources of the observed short-period wave disturbances shows that observed TIDs do not always coincide in time with passage of local meteorological fronts through the region of subionospheric points of OS paths and are not associated with passage of solar terminator. An attempt was made to connect a number of detected TIDs with ionospheric responses to tropical cyclones (TC) which were in active phase in the north-west of the Pacific Ocean during the periods considered. A considerable increase in energy of short-period wave disturbances was observed along Khabarovsk-Irkutsk, Magadan-Irkutsk, and Norilsk-Irkutsk paths during the active tropical cyclogenesis in September 2008-2009. Intensity of the observed TIDs decreased as midpoints of OS paths moved westward away from potential IGW sources. Ionospheric responses to wave disturbance propagation from the same IGW sources differ in the OS paths under analysis. This must be associated with different geometry of the OS paths as well as with the fact that the IGW source under consideration changes in intensity and its coordinates (stages and motion paths of tropical cyclones) during TC development. Thus there is an angular dependence between the wave disturbance propagation direction and the line connecting midpoints of the OS paths. Velocities of wave disturbance propagation (~90-170 m/s) were measured from the delay period of TIDs passage in regions of midpoints of spaced-apart OS paths. Short-period TIDs can also be observed at spring equinox in March 2008-2009 under quiet helio-geomagnetic conditions and in the absence of active tropical cyclones in the north-west of the Pacific Ocean, but TIDs energy is much lower than that in autumn. Authors note it was not possible to identify potential IGW sources for some TIDs within the scope of this work. These TIDs may be related to ionospheric responses to seasonal transitions in the upper atmosphere dynamic regime during the equinoxes under study. Further systematic investigations in this area of study are required to store statistics of observations of ionospheric responses to strong meteorological disturbances. The study was supported by the RFBR grant № 09-05-00760.

A unified view of base excision repair: lesion-dependent protein complexes regulated by post-translational modification

PubMed Central

Almeida, Karen H.; Sobol, Robert W.

2007-01-01

Base excision repair (BER) proteins act upon a significantly broad spectrum of DNA lesions that result from endogenous and exogenous sources. Multiple sub-pathways of BER (short-path or long-patch) and newly designated DNA repair pathways (e.g., SSBR and NIR) that utilize BER proteins complicate any comprehensive understanding of BER and its role in genome maintenance, chemotherapeutic response, neurodegeneration, cancer or aging. Herein, we propose a unified model of BER, comprised of three functional processes: Lesion Recognition/Strand Scission, Gap Tailoring and DNA Synthesis/Ligation, each represented by one or more multiprotein complexes and coordinated via the XRCC1/DNA Ligase III and PARP1 scaffold proteins. BER therefore may be represented by a series of repair complexes that assemble at the site of the DNA lesion and mediates repair in a coordinated fashion involving protein-protein interactions that dictate subsequent steps or sub-pathway choice. Complex formation is influenced by post-translational protein modifications that arise from the cellular state or the DNA damage response, providing an increase in specificity and efficiency to the BER pathway. In this review, we have summarized the reported BER protein-protein interactions and protein post-translational modifications and discuss the impact on DNA repair capacity and complex formation. PMID:17337257

Occurrence of amylose-lipid complexes in teff and maize starch biphasic pastes.

PubMed

Wokadala, Obiro Cuthbert; Ray, Suprakas Sinha; Emmambux, Mohammad Naushad

2012-09-01

The occurrence of amylose-lipid complexes was determined in maize and teff starch biphasic pastes i.e. peak viscosity pastes at short and prolonged pasting times. Maize and teff starches were pasted for 11.5 and 130 min with or without added stearic acid followed by thermo-stable alpha-amylase hydrolysis in a rapid visco-analyzer. X-ray diffraction analysis of pastes before and residues after hydrolysis showed crystalline V-amylose diffraction patterns for the starches pasted for a prolonged time with added stearic acid while less distinct V-amylose patterns with non-complexed stearic acid peaks were observed with a short pasting time. Differential scanning calorimetry of pastes before and residues after paste hydrolysis showed that Type I amylose-lipid complexes were formed after pasting for the short duration with added stearic acid, while Type II complexes are formed after pasting for the prolonged time. The present research provides evidence that amylose-lipid complexes play an important role in starch biphasic pasting. Copyright © 2012 Elsevier Ltd. All rights reserved.

Petrology of some oceanic island basalts: PRIMELT2.XLS software for primary magma calculation

NASA Astrophysics Data System (ADS)

Herzberg, C.; Asimow, P. D.

2008-09-01

PRIMELT2.XLS software is introduced for calculating primary magma composition and mantle potential temperature (TP) from an observed lava composition. It is an upgrade over a previous version in that it includes garnet peridotite melting and it detects complexities that can lead to overestimates in TP by >100°C. These are variations in source lithology, source volatile content, source oxidation state, and clinopyroxene fractionation. Nevertheless, application of PRIMELT2.XLS to lavas from a wide range of oceanic islands reveals no evidence that volatile-enrichment and source fertility are sufficient to produce them. All are associated with thermal anomalies, and this appears to be a prerequisite for their formation. For the ocean islands considered in this work, TP maxima are typically ˜1450-1500°C in the Atlantic and 1500-1600°C in the Pacific, substantially greater than ˜1350°C for ambient mantle. Lavas from the Galápagos Islands and Hawaii record in their geochemistry high TP maxima and large ranges in both TP and melt fraction over short horizontal distances, a result that is predicted by the mantle plume model.

Genome assembly from synthetic long read clouds

PubMed Central

Kuleshov, Volodymyr; Snyder, Michael P.; Batzoglou, Serafim

2016-01-01

Motivation: Despite rapid progress in sequencing technology, assembling de novo the genomes of new species as well as reconstructing complex metagenomes remains major technological challenges. New synthetic long read (SLR) technologies promise significant advances towards these goals; however, their applicability is limited by high sequencing requirements and the inability of current assembly paradigms to cope with combinations of short and long reads. Results: Here, we introduce Architect, a new de novo scaffolder aimed at SLR technologies. Unlike previous assembly strategies, Architect does not require a costly subassembly step; instead it assembles genomes directly from the SLR’s underlying short reads, which we refer to as read clouds. This enables a 4- to 20-fold reduction in sequencing requirements and a 5-fold increase in assembly contiguity on both genomic and metagenomic datasets relative to state-of-the-art assembly strategies aimed directly at fully subassembled long reads. Availability and Implementation: Our source code is freely available at https://github.com/kuleshov/architect. Contact: kuleshov@stanford.edu PMID:27307620

A Design Principle for an Autonomous Post-translational Pattern Formation.

PubMed

Sugai, Shuhei S; Ode, Koji L; Ueda, Hiroki R

2017-04-25

Previous autonomous pattern-formation models often assumed complex molecular and cellular networks. This theoretical study, however, shows that a system composed of one substrate with multisite phosphorylation and a pair of kinase and phosphatase can generate autonomous spatial information, including complex stripe patterns. All (de-)phosphorylation reactions are described with a generic Michaelis-Menten scheme, and all species freely diffuse without pre-existing gradients. Computational simulation upon >23,000,000 randomly generated parameter sets revealed the design motifs of cyclic reaction and enzyme sequestration by slow-diffusing substrates. These motifs constitute short-range positive and long-range negative feedback loops to induce Turing instability. The width and height of spatial patterns can be controlled independently by distinct reaction-diffusion processes. Therefore, multisite reversible post-translational modification can be a ubiquitous source for various patterns without requiring other complex regulations such as autocatalytic regulation of enzymes and is applicable to molecular mechanisms for inducing subcellular localization of proteins driven by post-translational modifications. Copyright © 2017 The Author(s). Published by Elsevier Inc. All rights reserved.

BESST--efficient scaffolding of large fragmented assemblies.

PubMed

Sahlin, Kristoffer; Vezzi, Francesco; Nystedt, Björn; Lundeberg, Joakim; Arvestad, Lars

2014-08-15

The use of short reads from High Throughput Sequencing (HTS) techniques is now commonplace in de novo assembly. Yet, obtaining contiguous assemblies from short reads is challenging, thus making scaffolding an important step in the assembly pipeline. Different algorithms have been proposed but many of them use the number of read pairs supporting a linking of two contigs as an indicator of reliability. This reasoning is intuitive, but fails to account for variation in link count due to contig features.We have also noted that published scaffolders are only evaluated on small datasets using output from only one assembler. Two issues arise from this. Firstly, some of the available tools are not well suited for complex genomes. Secondly, these evaluations provide little support for inferring a software's general performance. We propose a new algorithm, implemented in a tool called BESST, which can scaffold genomes of all sizes and complexities and was used to scaffold the genome of P. abies (20 Gbp). We performed a comprehensive comparison of BESST against the most popular stand-alone scaffolders on a large variety of datasets. Our results confirm that some of the popular scaffolders are not practical to run on complex datasets. Furthermore, no single stand-alone scaffolder outperforms the others on all datasets. However, BESST fares favorably to the other tested scaffolders on GAGE datasets and, moreover, outperforms the other methods when library insert size distribution is wide. We conclude from our results that information sources other than the quantity of links, as is commonly used, can provide useful information about genome structure when scaffolding.

Saturated fatty acid determination method using paired ion electrospray ionization mass spectrometry coupled with capillary electrophoresis.

PubMed

Lee, Ji-Hyun; Kim, Su-Jin; Lee, Sul; Rhee, Jin-Kyu; Lee, Soo Young; Na, Yun-Cheol

2017-09-01

A sensitive and selective capillary electrophoresis-mass spectrometry (CE-MS) method for determination of saturated fatty acids (FAs) was developed by using dicationic ion-pairing reagents forming singly charged complexes with anionic FAs. For negative ESI detection, 21 anionic FAs at pH 10 were separated using ammonium formate buffer containing 40% acetonitrile modifier in normal polarity mode in CE by optimizing various parameters. This method showed good separation efficiency, but the sensitivity of the method to short-chain fatty acids was quite low, causing acetic and propionic acids to be undetectable even at 100 mgL -1 in negative ESI-MS detection. Out of the four dicationic ion-pairing reagents tested, N,N'-dibutyl 1,1'-pentylenedipyrrolidium infused through a sheath-liquid ion source during CE separation was the best reagent regarding improved sensitivity and favorably complexed with anionic FAs for detection in positive ion ESI-MS. The monovalent complex showed improved ionization efficiency, providing the limits of detection (LODs) for 15 FAs ranging from 0.13 to 2.88 μg/mL and good linearity (R 2  > 0.99) up to 150 μg/mL. Compared to the negative detection results, the effect was remarkable for the detection of short- and medium-chain fatty acids. The optimized CE-paired ion electrospray (PIESI)-MS method was utilized for the determination of FAs in cheese and coffee with simple pretreatment. This method may be extended for sensitive analysis of unsaturated fatty acids. Copyright © 2017 Elsevier B.V. All rights reserved.

Short-term to seasonal variability in factors driving primary productivity in a shallow estuary: Implications for modeling production

NASA Astrophysics Data System (ADS)

Canion, Andy; MacIntyre, Hugh L.; Phipps, Scott

2013-10-01

The inputs of primary productivity models may be highly variable on short timescales (hourly to daily) in turbid estuaries, but modeling of productivity in these environments is often implemented with data collected over longer timescales. Daily, seasonal, and spatial variability in primary productivity model parameters: chlorophyll a concentration (Chla), the downwelling light attenuation coefficient (kd), and photosynthesis-irradiance response parameters (Pmchl, αChl) were characterized in Weeks Bay, a nitrogen-impacted shallow estuary in the northern Gulf of Mexico. Variability in primary productivity model parameters in response to environmental forcing, nutrients, and microalgal taxonomic marker pigments were analysed in monthly and short-term datasets. Microalgal biomass (as Chla) was strongly related to total phosphorus concentration on seasonal scales. Hourly data support wind-driven resuspension as a major source of short-term variability in Chla and light attenuation (kd). The empirical relationship between areal primary productivity and a combined variable of biomass and light attenuation showed that variability in the photosynthesis-irradiance response contributed little to the overall variability in primary productivity, and Chla alone could account for 53-86% of the variability in primary productivity. Efforts to model productivity in similar shallow systems with highly variable microalgal biomass may benefit the most by investing resources in improving spatial and temporal resolution of chlorophyll a measurements before increasing the complexity of models used in productivity modeling.

Seismic noise frequency dependent P and S wave sources

NASA Astrophysics Data System (ADS)

Stutzmann, E.; Schimmel, M.; Gualtieri, L.; Farra, V.; Ardhuin, F.

2013-12-01

Seismic noise in the period band 3-10 sec is generated in the oceans by the interaction of ocean waves. Noise signal is dominated by Rayleigh waves but body waves can be extracted using a beamforming approach. We select the TAPAS array deployed in South Spain between June 2008 and September 2009 and we use the vertical and horizontal components to extract noise P and S waves, respectively. Data are filtered in narrow frequency bands and we select beam azimuths and slownesses that correspond to the largest continuous sources per day. Our procedure automatically discard earthquakes which are localized during short time durations. Using this approach, we detect many more noise P-waves than S-waves. Source locations are determined by back-projecting the detected slowness/azimuth. P and S waves are generated in nearby areas and both source locations are frequency dependent. Long period sources are dominantly in the South Atlantic and Indian Ocean whereas shorter period sources are rather in the North Atlantic Ocean. We further show that the detected S-waves are dominantly Sv-waves. We model the observed body waves using an ocean wave model that takes into account all possible wave interactions including coastal reflection. We use the wave model to separate direct and multiply reflected phases for P and S waves respectively. We show that in the South Atlantic the complex source pattern can be explained by the existence of both coastal and pelagic sources whereas in the North Atlantic most body wave sources are pelagic. For each detected source, we determine the equivalent source magnitude which is compared to the model.

Time functions of deep earthquakes from broadband and short-period stacks

USGS Publications Warehouse

Houston, H.; Benz, H.M.; Vidale, J.E.

1998-01-01

To constrain dynamic source properties of deep earthquakes, we have systematically constructed broadband time functions of deep earthquakes by stacking and scaling teleseismic P waves from U.S. National Seismic Network, TERRAscope, and Berkeley Digital Seismic Network broadband stations. We examined 42 earthquakes with depths from 100 to 660 km that occurred between July 1, 1992 and July 31, 1995. To directly compare time functions, or to group them by size, depth, or region, it is essential to scale them to remove the effect of moment, which varies by more than 3 orders of magnitude for these events. For each event we also computed short-period stacks of P waves recorded by west coast regional arrays. The comparison of broadband with short-period stacks yields a considerable advantage, enabling more reliable measurement of event duration. A more accurate estimate of the duration better constrains the scaling procedure to remove the effect of moment, producing scaled time functions with both correct timing and amplitude. We find only subtle differences in the broadband time-function shape with moment, indicating successful scaling and minimal effects of attenuation at the periods considered here. The average shape of the envelopes of the short-period stacks is very similar to the average broadband time function. The main variations seen with depth are (1) a mild decrease in duration with increasing depth, (2) greater asymmetry in the time functions of intermediate events compared to deep ones, and (3) unexpected complexity and late moment release for events between 350 and 550 km, with seven of the eight events in that depth interval displaying markedly more complicated time functions with more moment release late in the rupture than most events above or below. The first two results are broadly consistent with our previous studies, while the third is reported here for the first time. The greater complexity between 350 and 550 km suggests greater heterogeneity in the failure process in that depth range. Copyright 1998 by the American Geophysical Union.

High-resolution multi-MeV x-ray radiography using relativistic laser-solid interaction

DOE Office of Scientific and Technical Information (OSTI.GOV)

Courtois, C.; Compant La Fontaine, A.; Barbotin, M.

2011-02-15

When high intensity ({>=}10{sup 19} W cm{sup -2}) laser light interacts with matter, multi-MeV electrons are produced. These electrons can be utilized to generate a MeV bremsstrahlung x-ray emission spectrum as they propagate into a high-Z solid target positioned behind the interaction area. The short duration (<10 ps) and the small diameter (<500 {mu}m) of the x-ray pulse combined with the MeV x-ray spectrum offers an interesting alternative to conventional bremsstrahlung x-ray sources based on an electron accelerator used to radiograph dense, rapidly moving objects. In experiments at the Omega EP laser, a multi-MeV x-ray source is characterized consistently withmore » number of independent diagnostics. An unfiltered x-ray dose of approximately 2 rad in air at 1 m and a source diameter of less than 350 {mu}m are inferred. Radiography of a complex and high area density (up to 61 g/cm{sup 2}) object is then performed with few hundred microns spatial resolution.« less

Nutritional treatment in inflammatory bowel disease. An update.

PubMed

Guagnozzi, Danila; González-Castillo, Sonia; Olveira, Antonio; Lucendo, Alfredo J

2012-09-01

enteral (EN) and parenteral (TPN) nutrition exert variable therapeutic effects on the induction and maintenance of remission in inflammatory bowel disease (IBD). This review aims to provide an updated discussion on the complex relationship between diet and IBD. medline, Cochrane and Scopus database searches were conducted. Sources cited in the articles obtained were also searched to identify other potential sources of information. nutritional status is significantly compromised in IBD patients, especially those with Crohn's disease (CD). Apart from restoring malnourishment, dietary components contribute to modulate intestinal immune responses. Nutritional treatment is divided into support therapy and primary therapy to induce and maintain remission through TPN and EN. EN is considered a first-line therapy in children with active CD whereas it is usually used in adult CD patients when corticosteroid therapy is not possible. TPN has limited effects on IBD.En formula composition, in terms of carbohydrates, nitrogen source and bioactive molecules supplementation, differentially influence on IBD treatment outcomes. Other dietary components, such as poorly absorbed short-chain carbohydrate, polyols, and exogenous microparticles, also participate in the etiopathogenesis of IBD. Finally, new approaches to understanding the complex relationship between IBD and diet are provided by nutrigenenomic. further long-term, well-powered studies are required to accurately assess the usefulness of nutrition in treating IBD. In future research, the potential role of nutrient-gene interaction in drug trials and specific dietary formula compositions should be investigated in order to incorporate new knowledge about the etiopathology of IBD into nutritional intervention.

New PHA products using unrelated carbon sources

PubMed Central

Matias, Fernanda; de Andrade Rodrigues, Maria Filomena

2011-01-01

Polyhydroxyalkanoates (PHA) are natural polyesters stored by a wide range of bacteria as carbon source reserve. Due to its chemical characteristics and biodegradability PHA can be used in chemical, medical and pharmaceutical industry for many human purposes. Over the past years, few Burkholderia species have become known for production of PHA. Aside from that, these bacteria seem to be interesting for discovering new PHA compositions which is important to different industrial applications. In this paper, we introduce two new strains which belong either to Burkholderia cepacia complex (Bcc) or genomovar-type, Burkholderia cepacia SA3J and Burkholderia contaminans I29B, both PHA producers from unrelated carbon sources. The classification was based on 16S rDNA and recA partial sequence genes and cell wall fatty acids composition. These two strains were capable to produce different types of PHA monomers or precursors. Unrelated carbon sources were used for growth and PHA accumulation. The amount of carbon source evaluated, or mixtures of them, was increased with every new experiment until it reaches eighteen carbon sources. As first bioprospection experiments staining methods were used with colony fluorescent dye Nile Red and the cell fluorescent dye Nile Blue A. Gas chromatography analysis coupled to mass spectrometry was used to evaluate the PHA composition on each strain cultivated on different carbon sources. The synthesized polymers were composed by short chain length-PHA (scl-PHA), especially polyhydroxybutyrate, and medium chain length-PHA (mcl-PHA) depending on the carbon source used. PMID:24031764

Comment on "Defocusing complex short-pulse equation and its multi-dark-soliton solution"

NASA Astrophysics Data System (ADS)

Youssoufa, Saliou; Kuetche, Victor K.; Kofane, Timoleon C.

2017-08-01

In their recent paper, Feng et al. [Phys. Rev. E 93, 052227 (2016), 10.1103/PhysRevE.93.052227] proposed a complex short-pulse equation of both focusing and defocusing types. They studied in detail the defocusing case and derived its multi-dark-soliton solutions. Nonetheless, from a physical viewpoint in order to better and deeply understand their genuine implications, we find it useful to provide a real and proper background for the derivation of the previous evolution system while showing that the expression of the nonlinear electric polarization the above authors used in their scheme is not suitable for getting the defocusing complex short-pulse equation.

Comment on "Defocusing complex short-pulse equation and its multi-dark-soliton solution".

PubMed

Youssoufa, Saliou; Kuetche, Victor K; Kofane, Timoleon C

2017-08-01

In their recent paper, Feng et al. [Phys. Rev. E 93, 052227 (2016)PREHBM2470-004510.1103/PhysRevE.93.052227] proposed a complex short-pulse equation of both focusing and defocusing types. They studied in detail the defocusing case and derived its multi-dark-soliton solutions. Nonetheless, from a physical viewpoint in order to better and deeply understand their genuine implications, we find it useful to provide a real and proper background for the derivation of the previous evolution system while showing that the expression of the nonlinear electric polarization the above authors used in their scheme is not suitable for getting the defocusing complex short-pulse equation.

Influence of Complex Terrain on Wind Fields in the Mojave Desert, Southwestern US

NASA Astrophysics Data System (ADS)

Clow, G. D.; Reynolds, R. L.; Urban, F. E.; Bogle, R.; Vogel, J. M.

2009-12-01

The complex terrain of southern California has important effects on the winds in this dust-producing region. We use the Weather Research and Forecasting Model (WRF) to investigate the influences of rugged topography on the wind field in the Mojave Desert at a variety of scales. For this study, the WRF model was used in a retrospective mode over the time period 2000-to-present, with horizontal resolutions as fine as 1-km in specific areas of interest (i.e., known dust-source areas). At a regional scale, the juxtaposition of California's Central Valley with the Sierra Nevada Mountain Range often generates a band of strong winds extending eastward from the southern end of the Sierra Nevada and Tehachapi Mountains across the Mojave Desert and into Arizona. At finer scales, WRF-derived winds within this band reveal terrain deflection, focusing, channeling, and rapid direction change over short distances. These effects are important for assessing the capacity of wind to produce dust at potential dust-source areas during specific events, and for determining dust-transport pathways. Comparison of the WRF results during strong wind events with data from meteorological stations having dust emission instruments (saltation sensors and/or wind-triggered time-lapse cameras) help elucidate landscape conditions that influence dust emission and patterns of dust transport.

Visible-Infrared Hyperspectral Image Projector

NASA Technical Reports Server (NTRS)

Bolcar, Matthew

2013-01-01

The VisIR HIP generates spatially-spectrally complex scenes. The generated scenes simulate real-world targets viewed by various remote sensing instruments. The VisIR HIP consists of two subsystems: a spectral engine and a spatial engine. The spectral engine generates spectrally complex uniform illumination that spans the wavelength range between 380 nm and 1,600 nm. The spatial engine generates two-dimensional gray-scale scenes. When combined, the two engines are capable of producing two-dimensional scenes with a unique spectrum at each pixel. The VisIR HIP can be used to calibrate any spectrally sensitive remote-sensing instrument. Tests were conducted on the Wide-field Imaging Interferometer Testbed at NASA s Goddard Space Flight Center. The device is a variation of the calibrated hyperspectral image projector developed by the National Institute of Standards and Technology in Gaithersburg, MD. It uses Gooch & Housego Visible and Infrared OL490 Agile Light Sources to generate arbitrary spectra. The two light sources are coupled to a digital light processing (DLP(TradeMark)) digital mirror device (DMD) that serves as the spatial engine. Scenes are displayed on the DMD synchronously with desired spectrum. Scene/spectrum combinations are displayed in rapid succession, over time intervals that are short compared to the integration time of the system under test.

Simulations of ultrafast x-ray laser experiments

NASA Astrophysics Data System (ADS)

Fortmann-Grote, C.; Andreev, A. A.; Appel, K.; Branco, J.; Briggs, R.; Bussmann, M.; Buzmakov, A.; Garten, M.; Grund, A.; Huebl, A.; Jurek, Z.; Loh, N. D.; Nakatsutsumi, M.; Samoylova, L.; Santra, R.; Schneidmiller, E. A.; Sharma, A.; Steiniger, K.; Yakubov, S.; Yoon, C. H.; Yurkov, M. V.; Zastrau, U.; Ziaja-Motyka, B.; Mancuso, A. P.

2017-06-01

Simulations of experiments at modern light sources, such as optical laser laboratories, synchrotrons, and free electron lasers, become increasingly important for the successful preparation, execution, and analysis of these experiments investigating ever more complex physical systems, e.g. biomolecules, complex materials, and ultra-short lived states of matter at extreme conditions. We have implemented a platform for complete start-to-end simulations of various types of photon science experiments, tracking the radiation from the source through the beam transport optics to the sample or target under investigation, its interaction with and scattering from the sample, and registration in a photon detector. This tool allows researchers and facility operators to simulate their experiments and instruments under real life conditions, identify promising and unattainable regions of the parameter space and ultimately make better use of valuable beamtime. In this paper, we present an overview about status and future development of the simulation platform and discuss three applications: 1.) Single-particle imaging of biomolecules using x-ray free electron lasers and optimization of x-ray pulse properties, 2.) x-ray scattering diagnostics of hot dense plasmas in high power laser-matter interaction and identification of plasma instabilities, and 3.) x-ray absorption spectroscopy in warm dense matter created by high energy laser-matter interaction and pulse shape optimization for low-isentrope dynamic compression.

Seasonal Differences in the CO2 Exchange of a Short-Hydroperiod Florida Everglades Marsh

NASA Astrophysics Data System (ADS)

Schedlbauer, J. L.; Oberbauer, S. F.; Starr, G.; Jimenez, K. L.

2009-12-01

Although wetlands are among the world’s most productive ecosystems, little is known of long-term CO2 exchange in tropical and subtropical wetlands. As human pressure on wetlands increases and climate change proceeds, there is growing need to increase our knowledge of wetland ecosystem function. The Everglades is a highly managed wetlands complex occupying >6000 km2 in south Florida. This ecosystem is oligotrophic, but extremely high rates of productivity have been previously reported. To evaluate annual and seasonal (dry vs. wet season) ecosystem production, CO2 exchange was determined by eddy covariance in a short-hydroperiod marl marsh. Rates of net ecosystem exchange and ecosystem respiration were small year-round and declined in the wet season relative to the dry season. Inundation submerged approximately half of the marsh’s leaf area, substantially limiting gross ecosystem production. While light and air temperature exerted the primary controls on net ecosystem exchange and ecosystem respiration in the dry season, inundation weakened these relationships. The ecosystem shifted from a CO2 sink in the dry season to a CO2 source in the wet season; however, the marsh was a small carbon sink on an annual basis. Net ecosystem production, ecosystem respiration, and gross ecosystem production were -27.9, 394.3, and 422.2 g C m-2 year-1, respectively. Unexpectedly low CO2 flux rates and annual production distinguish the Everglades from many other wetlands. Nonetheless, impending changes in water management and climate are likely to alter the CO2 balance of this wetland and may increase the source strength of these extensive short-hydroperiod marshes.

Origin and function of short-latency inputs to the neural substrates underlying the acoustic startle reflex

PubMed Central

Gómez-Nieto, Ricardo; Horta-Júnior, José de Anchieta C.; Castellano, Orlando; Millian-Morell, Lymarie; Rubio, Maria E.; López, Dolores E.

2014-01-01

The acoustic startle reflex (ASR) is a survival mechanism of alarm, which rapidly alerts the organism to a sudden loud auditory stimulus. In rats, the primary ASR circuit encompasses three serially connected structures: cochlear root neurons (CRNs), neurons in the caudal pontine reticular nucleus (PnC), and motoneurons in the medulla and spinal cord. It is well-established that both CRNs and PnC neurons receive short-latency auditory inputs to mediate the ASR. Here, we investigated the anatomical origin and functional role of these inputs using a multidisciplinary approach that combines morphological, electrophysiological and behavioral techniques. Anterograde tracer injections into the cochlea suggest that CRNs somata and dendrites receive inputs depending, respectively, on their basal or apical cochlear origin. Confocal colocalization experiments demonstrated that these cochlear inputs are immunopositive for the vesicular glutamate transporter 1 (VGLUT1). Using extracellular recordings in vivo followed by subsequent tracer injections, we investigated the response of PnC neurons after contra-, ipsi-, and bilateral acoustic stimulation and identified the source of their auditory afferents. Our results showed that the binaural firing rate of PnC neurons was higher than the monaural, exhibiting higher spike discharges with contralateral than ipsilateral acoustic stimulations. Our histological analysis confirmed the CRNs as the principal source of short-latency acoustic inputs, and indicated that other areas of the cochlear nucleus complex are not likely to innervate PnC. Behaviorally, we observed a strong reduction of ASR amplitude in monaural earplugged rats that corresponds with the binaural summation process shown in our electrophysiological findings. Our study contributes to understand better the role of neuronal mechanisms in auditory alerting behaviors and provides strong evidence that the CRNs-PnC pathway mediates fast neurotransmission and binaural summation of the ASR. PMID:25120419

Organic matter compounds as source indicators and tracers for marine pollution in a western Mediterranean coastal zone.

PubMed

Amorri, Jalila; Geffroy-Rodier, Claude; Boufahja, Fehmi; Mahmoudi, Ezzeddine; Aïssa, Patricia; Ksibi, Mohamed; Amblès, André

2011-11-01

Complex organic compounds found in oil and sediments linked with a particular source (such as algae, bacteria or vascular plants) are defined as biomarkers and are useful dating indicators in organic geochemistry. This paper presents the composition of the organic matter (OM) on marine surface sediments from a degraded Tunisian coast analysed by pyrolysis and gas chromatography-mass spectrometry (GC-MS). High total OM contents (0.3-4.2%) were detected with high levels of saturated linear hydrocarbons. The aliphatic lipids had contributed with up to 11.7% of the total OM, and their distribution had consisted of resolved compounds (n-alkanes and fatty acid (FAs)) and an unresolved complex mixture. Hydrocarbons, primarily n-alkanes, were ranged from 368 to 3,886 μg g(-1). The FAs (674-2,568 μg g(-1)) were dominated by derived primary production, and the short chain FAs (C16 and C18) were the most abundant throughout. The ubiquitous presence of petroleum contamination, mainly from offshore oil exploration, discharge of pollutants from rivers, shipping activities and atmospheric deposition was found in all samples. The Gabès littoral seems to be quite to very polluted near the industrial zone of Ghannouch. The C/H ratio (generally around 5.9), the thermal analysis and GC-MS of n-alkanes and FAs showed that the OM in the studied area was composed of anthropogenic/petrogenic, marine and continental sources. Our study represents an innovative approach to assessing environmental pollution. The evaluation of organic matter by examination of sterols, alkanes and fatty acids allows the identification of source, both anthropogenic and natural.

Direct Human Contact with Siloxanes (Silicones) – Safety or Risk Part 1. Characteristics of Siloxanes (Silicones)

PubMed Central

Mojsiewicz-Pieńkowska, Krystyna; Jamrógiewicz, Marzena; Szymkowska, Katarzyna; Krenczkowska, Dominika

2016-01-01

Siloxanes are commonly known as silicones. They belong to the organosilicon compounds and are exclusively obtained by synthesis. Their chemical structure determines a range of physicochemical properties which were recognized as unique. Due to the susceptibility to chemical modifications, ability to create short, long or complex polymer particles, siloxanes found an application in many areas of human life. Siloxanes differ in particle size, molecular weight, shape and chemical groups. As a result, this determines the different physico-chemical properties, that directly affect the safety or the risk of their use. The areas that can be a source of danger to human health will be commented in this paper. PMID:27303296

Analytical performance study of solar blind non-line-of-sight ultraviolet short-range communication links.

PubMed

Xu, Zhengyuan; Ding, Haipeng; Sadler, Brian M; Chen, Gang

2008-08-15

Motivated by recent advances in solid-state incoherent ultraviolet sources and solar blind detectors, we study communication link performance over a range of less than 1 km with a bit error rate (BER) below 10(-3) in solar blind non-line-of-sight situation. The widely adopted yet complex single scattering channel model is significantly simplified by means of a closed-form expression for tractable analysis. Path loss is given as a function of transceiver geometry as well as atmospheric scattering and attenuation and is compared with experimental data for model validation. The BER performance of a shot-noise-limited receiver under this channel model is demonstrated.

A compact, coherent light source system architecture

NASA Astrophysics Data System (ADS)

Biedron, S. G.; Dattoli, G.; DiPalma, E.; Einstein, J.; Milton, S. V.; Petrillo, V.; Rau, J. V.; Sabia, E.; Spassovsky, I. P.; van der Slot, P. J. M.

2016-09-01

Our team has been examining several architectures for short-wavelength, coherent light sources. We are presently exploring the use and role of advanced, high-peak power lasers for both accelerating the electrons and generating a compact light source with the same laser. Our overall goal is to devise light sources that are more accessible by industry and in smaller laboratory settings. Although we cannot and do not want to compete directly with sources such as third-generation light sources or that of national-laboratory-based free-electron lasers, we have several interesting schemes that could bring useful and more coherent, short-wavelength light source to more researchers. Here, we present and discuss several results of recent simulations and our future steps for such dissemination.

Nano-structure of the laminin γ-1 short arm reveals an extended and curved multidomain assembly.

PubMed

Patel, Trushar R; Morris, Gordon A; Zwolanek, Daniela; Keene, Douglas R; Li, Jianhua; Harding, Stephen E; Koch, Manuel; Stetefeld, Jörg

2010-09-01

Laminins are multidomain glycoproteins that play important roles in development and maintenance of the extracellular matrix via their numerous interactions with other proteins. Several receptors for the laminin short arms revealed their importance in network formation and intercellular signaling. However, both the detailed structure of the laminin γ-1 short arm and its organization within the complexes is poorly understood due to the complexity of the molecule and the lack of a high-resolution structure. The presented data provide the first subatomic resolution structure for the laminin γ-1 short arm in solution. This was achieved using an integrated approach that combined a number of complementary biophysical techniques such as small angle X-ray scattering (SAXS), analytical ultracentrifugation, dynamic light scattering and electron microscopy. As a result of this study, we have obtained a significantly improved model for the laminin γ-1 short arm that represents a major step forward in molecular understanding of laminin-mediated complex formations. Crown Copyright © 2010. Published by Elsevier B.V. All rights reserved.

Short-term bioassay of complex organic mixtures. Part II. Mutagenicity testing

DOE Office of Scientific and Technical Information (OSTI.GOV)

Epler, J.L.; Clark, B.R.; Ho, C.

1978-01-01

The feasibility of using short-term mutagenicity assays to predict the potential biohazard of various crude and complex test materials has been examined in a coupled chemical and biological approach. The principal focus of the research has involved the preliminary chemical characterizatiion and preparation for bioassay, followed by testing in the Salmonella histidine reversion assay system. The mutagenicity tests are intended to act as predictors of profound long-range health effects such as mutagenesis and/or carcinogenesis; act as a mechanism to rapidly isolate and identify a hazardous agent in a complex mixture; and function as a measure of biological activity correlating baselinemore » data with changes in process conditions. Since complex mixtures can be fractionated and approached in these short-term assays, information reflecting on the actual compounds responsible for the biological effect may be accumulated.« less

A broadband LED source in visible to short-wave-infrared wavelengths for spectral tumor diagnostics

NASA Astrophysics Data System (ADS)

Hayashi, Daiyu; van Dongen, Anne Marie; Boerekamp, Jack; Spoor, Sandra; Lucassen, Gerald; Schleipen, Jean

2017-06-01

Various tumor types exhibit the spectral fingerprints in the absorption and reflection spectra in visible and especially in near- to short-wave-infrared wavelength ranges. For the purpose of spectral tumor diagnostics by means of diffuse reflectance spectroscopy, we developed a broadband light emitting diode (LED) source consisting of a blue LED for optical excitation, Lu3Al5O12:Ce3+,Cr3+ luminescent garnet for visible to near infrared emissions, and Bismuth doped GeO2 luminescent glass for near-infrared to short-wave infrared emissions. It emits broad-band light emissions continuously in 470-1600 nm with a spectral gap at 900-1000 nm. In comparison to the currently available broadband light sources like halogen lamps, high-pressure discharge lamps and super continuum lasers, the light sources of this paper has significant advantages for spectral tissue diagnostics in high-spectral stability, improved light coupling to optical fibers, potential in low light source cost and enabling battery-drive.

Chemoenzymatic synthesis of differentially protected 3-deoxysugars

NASA Astrophysics Data System (ADS)

Gillingham, Dennis G.; Stallforth, Pierre; Adibekian, Alexander; Seeberger, Peter H.; Hilvert, Donald

2010-02-01

3-Deoxysugars are important constituents of complex carbohydrates. For example, 2-keto-3-deoxy-D-manno-octulosonic acid (KDO) is an essential component of lipopolysaccharides in Gram-negative bacteria, 2-keto-3-deoxy-D-glycero-D-galacto-nonulosonic acid (KDN) is widely found in carbohydrates of the bacterial cell wall and in lower vertebrates, and sialic acid is a common cap of mammalian glycoproteins. Although ready access to such sugars would benefit the creation of vaccine candidates, antibiotics and small-molecule drugs, their chemical synthesis is difficult. Here we present a simple chemoenzymatic method for preparing differentially protected 3-deoxysugar derivatives from readily available starting materials. It exploits the promiscuous aldolase activity of the enzyme macrophomate synthase (MPS) to add pyruvate enolate diastereoselectively to a wide range of structurally complex aldehydes. A short synthesis of KDN illustrates the utility of this approach. Enzyme promiscuity, which putatively fosters large functional leaps in natural evolution, has great promise as a source of synthetically useful catalytic transformations.

Electrical stimulation vs thermal effects in a complex electromagnetic environment.

PubMed

Paniagua, Jesús M; Rufo, Montaña; Jiménez, Antonio; Antolín, Alicia; Sánchez, Miguel

2009-08-01

Studies linking exposure to low levels of radiofrequencies with adverse health effects, notwithstanding their present apparent inconsistency, have contributed to a steady improvement in the quality of evaluating that exposure. In complex electromagnetic environments, with a multitude of emissions of different frequencies acting simultaneously, knowledge of the spectral content is fundamental to evaluating human exposure to non-ionizing radiation. In the present work, we quantify the most significant spectral components in the frequency band 0.5-2200 MHz in an urban area. The measurements were made with a spectrum analyzer and monopole, biconical, and log-periodic antennas. Power density levels were calculated separately for the medium wave, short wave, and frequency modulation radio broadcasting bands, and for the television and GSM, DCS, and UMTS mobile telephony bands. The measured levels were compared with the ICNIRP reference levels for exposure to multiple frequency sources for thermal effects and electrical stimulation. The results showed the criterion limiting exposure on the basis of preventing electrical stimulation of peripheral nerves and muscles to be stricter (exposure quotient 24.7 10(-4)) than that based on thermal considerations (exposure quotient 0.16 10(-4)). The bands that contribute most to the latter are short wave, with 46.2%, and mobile telephony with 32.6% of the total exposure. In a complex electromagnetic environment, knowledge of the radiofrequency spectrum is essential in order to quantify the contribution of each type of emission to the public's exposure. It is also necessary to evaluate the electrical effects as well as the thermal effects because the criterion to limit exposure on the basis of the effect of the electrical stimulation of tissues is stricter than that based on thermal effects.

The 2017 North Korea M6 seismic sequence: moment tensor, source time function, and aftershocks

NASA Astrophysics Data System (ADS)

Ni, S.; Zhan, Z.; Chu, R.; He, X.

2017-12-01

On September 3rd, 2017, an M6 seismic event occurred in North Korea, with location near previous nuclear test sites. The event features strong P waves and short period Rayleigh waves are observed in contrast to weak S waves, suggesting mostly explosion mechanism. We performed joint inversion for moment tensor and depth with both local and teleseismic waveforms, and find that the event is shallow with mostly isotropic yet substantial non-isotropic components. Deconvolution of seismic waveforms of this event with respect to previous nuclear test events shows clues of complexity in source time function. The event is followed by smaller earthquakes, as early as 8.5 minutes and lasted at least to October. The later events occurred in a compact region, and show clear S waves, suggesting double couple focal mechanism. Via analyzing Rayleigh wave spectrum, these smaller events are found to be shallow. Relative locations, difference in waveforms of the events are used to infer their possible links and generation mechanism.

Charge plasma technique based dopingless accumulation mode junctionless cylindrical surrounding gate MOSFET: analog performance improvement

NASA Astrophysics Data System (ADS)

Trivedi, Nitin; Kumar, Manoj; Haldar, Subhasis; Deswal, S. S.; Gupta, Mridula; Gupta, R. S.

2017-09-01

A charge plasma technique based dopingless (DL) accumulation mode (AM) junctionless (JL) cylindrical surrounding gate (CSG) MOSFET has been proposed and extensively investigated. Proposed device has no physical junction at source to channel and channel to drain interface. The complete silicon pillar has been considered as undoped. The high free electron density or induced N+ region is designed by keeping the work function of source/drain metal contacts lower than the work function of undoped silicon. Thus, its fabrication complexity is drastically reduced by curbing the requirement of high temperature doping techniques. The electrical/analog characteristics for the proposed device has been extensively investigated using the numerical simulation and are compared with conventional junctionless cylindrical surrounding gate (JL-CSG) MOSFET with identical dimensions. For the numerical simulation purpose ATLAS-3D device simulator is used. The results show that the proposed device is more short channel immune to conventional JL-CSG MOSFET and suitable for faster switching applications due to higher I ON/ I OFF ratio.

Normal and anomalous diffusion in fluctuations of dust concentration nearby emission source

NASA Astrophysics Data System (ADS)

Szczurek, Andrzej; Maciejewska, Monika; Wyłomańska, Agnieszka; Sikora, Grzegorz; Balcerek, Michał; Teuerle, Marek

2018-02-01

Particulate matter (PM) is an important component of air. Nowadays, major attention is payed to fine dust. It has considerable environmental impact, including adverse effect on human health. One of important issues regarding PM is the temporal variation of its concentration. The variation contains information about factors influencing this quantity in time. The work focuses on the character of PM concentration dynamics indoors, in the vicinity of emission source. The objective was to recognize between the homogeneous or heterogeneous dynamics. The goal was achieved by detecting normal and anomalous diffusion in fluctuations of PM concentration. For this purpose we used anomalous diffusion exponent, β which was derived from Mean Square Displacement (MSD) analysis. The information about PM concentration dynamics may be used to design sampling strategy, which serves to attain representative information about PM behavior in time. The data analyzed in this work was collected from single-point PM concentration monitoring in the vicinity of seven emission sources in industrial environment. In majority of cases we observed heterogeneous character of PM concentration dynamics. It confirms the complexity of interactions between the emission sources and indoor environment. This result also votes against simplistic approach to PM concentration measurement indoors, namely their occasional character, short measurement periods and long term averaging.

Combined analysis of modeled and monitored SO2 concentrations at a complex smelting facility.

PubMed

Rehbein, Peter J G; Kennedy, Michael G; Cotsman, David J; Campeau, Madonna A; Greenfield, Monika M; Annett, Melissa A; Lepage, Mike F

2014-03-01

Vale Canada Limited owns and operates a large nickel smelting facility located in Sudbury, Ontario. This is a complex facility with many sources of SO2 emissions, including a mix of source types ranging from passive building roof vents to North America's tallest stack. In addition, as this facility performs batch operations, there is significant variability in the emission rates depending on the operations that are occurring. Although SO2 emission rates for many of the sources have been measured by source testing, the reliability of these emission rates has not been tested from a dispersion modeling perspective. This facility is a significant source of SO2 in the local region, making it critical that when modeling the emissions from this facility for regulatory or other purposes, that the resulting concentrations are representative of what would actually be measured or otherwise observed. To assess the accuracy of the modeling, a detailed analysis of modeled and monitored data for SO2 at the facility was performed. A mobile SO2 monitor sampled at five locations downwind of different source groups for different wind directions resulting in a total of 168 hr of valid data that could be used for the modeled to monitored results comparison. The facility was modeled in AERMOD (American Meteorological Society/U.S. Environmental Protection Agency Regulatory Model) using site-specific meteorological data such that the modeled periods coincided with the same times as the monitored events. In addition, great effort was invested into estimating the actual SO2 emission rates that would likely be occurring during each of the monitoring events. SO2 concentrations were modeled for receptors around each monitoring location so that the modeled data could be directly compared with the monitored data. The modeled and monitored concentrations were compared and showed that there were no systematic biases in the modeled concentrations. This paper is a case study of a Combined Analysis of Modelled and Monitored Data (CAMM), which is an approach promulgated within air quality regulations in the Province of Ontario, Canada. Although combining dispersion models and monitoring data to estimate or refine estimates of source emission rates is not a new technique, this study shows how, with a high degree of rigor in the design of the monitoring and filtering of the data, it can be applied to a large industrial facility, with a variety of emission sources. The comparison of modeled and monitored SO2 concentrations in this case study also provides an illustration of the AERMOD model performance for a large industrial complex with many sources, at short time scales in comparison with monitored data. Overall, this analysis demonstrated that the AERMOD model performed well.

Ci8 short, a novel LPS-induced peptide from the ascidian Ciona intestinalis, modulates responses of the human immune system.

PubMed

Bonura, Angela; Vizzini, Aiti; Vlah, Sara; Gervasi, Francesco; Longo, Alessandra; Melis, Mario R; Schildberg, Frank A; Colombo, Paolo

2018-02-01

The selective modulation of immunity is an emerging concept driven by the vast advances in our understanding of this crucial host defense system. Invertebrates have raised researchers' interest as potential sources of new bioactive molecules owing to their antibacterial, anticancer and immunomodulatory activities. A LipoPolySaccharide (LPS) challenge in the ascidian Ciona intestinalis generates the transcript, Ci8 short, with cis-regulatory elements in the 3' UTR region that are essential for shaping innate immune responses. The derived amino acidic sequence in silico analysis showed specific binding to human Major Histocompatibility Complex (MHC) Class I and Class II alleles. The role of Ci8 short peptide was investigated in a more evolved immune system using human Peripheral Blood Mononuclear Cells (PBMCs) as in vitro model. The biological activities of this molecule include the activation of 70kDa TCR ζ chain Associated Protein kinase (ZAP-70) and T Cell Receptor (TCR) Vβ oligo clonal selection on CD4 + T lymphocytes as well as increased proliferation and IFN-γ secretion. Furthermore Ci8 short affects CD4 + /CD25 high induced regulatory T cells (iTreg) subset selection which co-expressed the functional markers TGF-β1/Latency Associated Protein (LAP) and CD39/CD73. This paper describes a new molecule that modulates important responses of the human adaptive immune system. Copyright © 2017 Elsevier GmbH. All rights reserved.

Column Store for GWAC: A High-cadence, High-density, Large-scale Astronomical Light Curve Pipeline and Distributed Shared-nothing Database

NASA Astrophysics Data System (ADS)

Wan, Meng; Wu, Chao; Wang, Jing; Qiu, Yulei; Xin, Liping; Mullender, Sjoerd; Mühleisen, Hannes; Scheers, Bart; Zhang, Ying; Nes, Niels; Kersten, Martin; Huang, Yongpan; Deng, Jinsong; Wei, Jianyan

2016-11-01

The ground-based wide-angle camera array (GWAC), a part of the SVOM space mission, will search for various types of optical transients by continuously imaging a field of view (FOV) of 5000 degrees2 every 15 s. Each exposure consists of 36 × 4k × 4k pixels, typically resulting in 36 × ˜175,600 extracted sources. For a modern time-domain astronomy project like GWAC, which produces massive amounts of data with a high cadence, it is challenging to search for short timescale transients in both real-time and archived data, and to build long-term light curves for variable sources. Here, we develop a high-cadence, high-density light curve pipeline (HCHDLP) to process the GWAC data in real-time, and design a distributed shared-nothing database to manage the massive amount of archived data which will be used to generate a source catalog with more than 100 billion records during 10 years of operation. First, we develop HCHDLP based on the column-store DBMS of MonetDB, taking advantage of MonetDB’s high performance when applied to massive data processing. To realize the real-time functionality of HCHDLP, we optimize the pipeline in its source association function, including both time and space complexity from outside the database (SQL semantic) and inside (RANGE-JOIN implementation), as well as in its strategy of building complex light curves. The optimized source association function is accelerated by three orders of magnitude. Second, we build a distributed database using a two-level time partitioning strategy via the MERGE TABLE and REMOTE TABLE technology of MonetDB. Intensive tests validate that our database architecture is able to achieve both linear scalability in response time and concurrent access by multiple users. In summary, our studies provide guidance for a solution to GWAC in real-time data processing and management of massive data.

Sediment fingerprinting with long- and short-lived radionuclide tracers in the Root River watershed, southeastern Minnesota

NASA Astrophysics Data System (ADS)

Belmont, P.; Stout, J. C.

2015-12-01

The field of sediment fingerprinting has evolved rapidly over the past decade and is poised to improve our understanding not only of sediment sources, but also the routing of sediment through watersheds. Such information is essential for understanding and modeling human impacts on erosion and sediment routing at the watershed scale. In this study we use long- (Beryllium-10, 10Be) and short-lived (Lead-210 and Cesium-137, 210Pb and 137Cs, respectively) radionuclide tracers associated with suspended sediment to quantify sediment sources and channel-floodplain exchange across a range of watershed scales from 10 km2 to 4500 km2 in in the Root River, southeastern Minnesota, USA. The uppermost quarter of the Root River watershed was glaciated repeatedly during the late Pleistocene and is characterized by low relief agricultural fields and fine textured soils. The remainder of the watershed lies within the driftless area of the upper Midwestern US, which has not been glaciated in at least the past 500,000 years, and is characterized by karst topography, relatively steep hillslopes and bedrock channels that debouch into a wide, aggrading alluvial valley. The structure of the landscape exerts strong control on sediment generation and transport. Geochemical results indicate a highly variable erosion history, with significant variability of 10Be concentrations in source areas (agricultural fields, forested hillslopes, and alluvial floodplains and terraces) and inverted 10Be depth profiles (higher concentrations at depth) in floodplains, suggesting unsteady erosion and significant storage of legacy sediment. Concentrations of 10Be and 210Pb associated with suspended sediment show a systematic disparity in normalized concentrations, indicating that significant storage and re-suspension occurs in both systems as the sediment is routed through the channel-floodplain complex.

77 FR 54850 - Airworthiness Directives; The Boeing Company Airplanes

Federal Register 2010, 2011, 2012, 2013, 2014

2012-09-06

... sources in the auxiliary (center) fuel tank, main fuel tanks, and surge tanks caused by a wiring short or... on the rear spar, and installation of a TFE sleeve if necessary. This proposed AD would also add... sources in the auxiliary (center) fuel tank, main fuel tanks, and surge tanks caused by a wiring short or...

Imaging ultrafast excited state pathways in transition metal complexes by X-ray transient absorption and scattering using X-ray free electron laser source

DOE Office of Scientific and Technical Information (OSTI.GOV)

Chen, Lin X.; Shelby, Megan L.; Lestrange, Patrick J.

2016-01-01

This report will describe our recent studies of transition metal complex structural dynamics on the fs and ps time scales using an X-ray free electron laser source, Linac Coherent Light Source (LCLS). Ultrafast XANES spectra at the Ni K-edge of nickel(II) tetramesitylporphyrin (NiTMP) were successfully measured for optically excited state at a timescale from 100 fs to 50 ps, providing insight into its sub-ps electronic and structural relaxation processes. Importantly, a transient reduced state Ni(I) (π, 3dx2-y2) electronic state is captured through the interpretation of a short-lived excited state absorption on the low-energy shoulder of the edge, which is aidedmore » by the computation of X-ray transitions for postulated excited electronic states. The observed and computed inner shell to valence orbital transition energies demonstrate and quantify the influence of electronic configuration on specific metal orbital energies. A strong influence of the valence orbital occupation on the inner shell orbital energies indicates that one should not use the transition energy from 1s to other orbitals to draw conclusions about the d-orbital energies. For photocatalysis, a transient electronic configuration could influence d-orbital energies up to a few eV and any attempt to steer the reaction pathway should account for this to ensure that external energies can be used optimally in driving desirable processes. NiTMP structural evolution and the influence of the porphyrin macrocycle conformation on relaxation kinetics can be likewise inferred from this study.« less

Properties of Orange-Pupa-Inducing Factor (OPIF) in the swallowtail butterfly, Papilio xuthus L.

PubMed

Yamanaka, Akira; Adachi, Miwa; Imai, Hiroshi; Uchiyama, Terumasa; Inoue, Moeko; Islam, A T M Fayezul; Kitazawa, Chisato; Endo, Katsuhiko

2006-03-01

Diapause pupae of the swallowtail butterfly Papilio xuthus L. exhibit diapause-green, orange and brownish-orange color polymorphism. Development of orange pupae involves a neuroendocrine factor inducing orange pupa (Orange-Pupa-Inducing Factor, OPIF), which is secreted from the head-thoracic region during late pharate pupal stages, in particular from the ganglia of short-day animals located posteriorly from the second thoracic ganglion2 (TG2). This report describes certain properties of OPIF using bioassays involving ligated abdomens of short-day pharate pupae. Localization of OPIF in the central nervous system of short-day larvae indicated that it was present predominantly in TG2, thoracic ganglion3 (TG3) and abdominal ganglion1 (AG1) complexes. OPIF activity in TG(2,3)-AG1 complexes was over two times higher than in the more posteriorely located ganglia. The developmental profile of OPIF in last instar short-day larvae revealed that OPIF activity in larval ganglia posterior to TG2 became gradually higher as larval growth proceeded, suggesting that OPIF might be accumulated in TG(2,3)-AG(1-7) complexes as larvae prepare for pupal molting. Furthermore, ligated abdomens of short-day larvae developed into pupae of an orange type when a 2% NaCl extract containing OPIF prepared from TG(2,3)-AG(1-7) complexes of long-day larvae was injected into ligated abdomens of short-day pharate pupae, indicating that OPIF is also present in long-day larvae. Additionally, a biochemical investigation using gel filtration chromatography showed that the molecular weight of OPIF was about 10 kDa.

Consequence of preterm birth in early adolescence: the role of language on auditory short-term memory.

PubMed

Fraello, David; Maller-Kesselman, Jill; Vohr, Betty; Katz, Karol H; Kesler, Shelli; Schneider, Karen; Reiss, Allan; Ment, Laura; Spann, Marisa N

2011-06-01

This study tested the hypothesis that preterm early adolescents' short-term memory is compromised when presented with increasingly complex verbal information and that associated neuroanatomical volumes would differ between preterm and term groups. Forty-nine preterm and 20 term subjects were evaluated at age 12 years with neuropsychological measures and magnetic resonance imaging (MRI). There were no differences between groups in simple short-term and working memory. Preterm subjects performed lower on learning and short-term memory tests that included increased verbal complexity. They had reduced right parietal, left temporal, and right temporal white matter volumes and greater bilateral frontal gray and right frontal white matter volumes. There was a positive association between complex working memory and the left hippocampus and frontal white matter in term subjects. While not correlated, memory scores and volumes of cortical regions known to subserve language and memory were reduced in preterm subjects. This study provides evidence of possible mechanisms for learning problems in former preterm infants.

Broadband complex permeability characterization of magnetic thin films using shorted microstrip transmission-line perturbation

NASA Astrophysics Data System (ADS)

Liu, Yan; Chen, Linfeng; Tan, C. Y.; Liu, H. J.; Ong, C. K.

2005-06-01

A brief review of the methods used for broadband complex permeability measurement of magnetic thin films up to microwave frequencies is given. In particular, the working principles of the transmission-line perturbation methods for the characterization of magnetic thin films are discussed, with emphasis on short-circuited planar transmission-line perturbation methods. The algorithms for calculating the complex permeability of magnetic thin films for short-circuited planar transmission-line perturbation methods are analyzed. A shorted microstrip line is designed and fabricated as a prototype measurement fixture. The structure of the microstrip fixture and the corresponding measurement procedure are discussed in detail. A piece of 340 nm thick FeTaN thin film deposited on Si substrate using sputtering method is characterized using the microstrip fixture. An improved technique for obtaining permeability by using a saturation magnetization field is demonstrated here, and the results fit well with the Landau-Lifchitz-Gilbert theory. Approaches to extending this method to other aspects in the investigation of magnetic thin film are also discussed.

Coupling a Neural Network with Atmospheric Flow Simulations to Locate and Quantify CH4 Emissions at Well Pads

NASA Astrophysics Data System (ADS)

Travis, B. J.; Sauer, J.; Dubey, M. K.

2017-12-01

Methane (CH4) leaks from oil and gas production fields are a potentially significant source of atmospheric methane. US DOE's ARPA-E office is supporting research to locate methane emissions at 10 m size well pads to within 1 m. A team led by Aeris Technologies, and that includes LANL, Planetary Science Institute and Rice University has developed an autonomous leak detection system (LDS) employing a compact laser absorption methane sensor, a sonic anemometer and multiport sampling. The LDS system analyzes monitoring data using a convolutional neural network (cNN) to locate and quantify CH4 emissions. The cNN was trained using three sources: (1) ultra-high-resolution simulations of methane transport provided by LANL's coupled atmospheric transport model HIGRAD, for numerous controlled methane release scenarios and methane sampling configurations under variable atmospheric conditions, (2) Field tests at the METEC site in Ft. Collins, CO., and (3) Field data from other sites where point-source surface methane releases were monitored downwind. A cNN learning algorithm is well suited to problems in which the training and observed data are noisy, or correspond to complex sensor data as is typical of meteorological and sensor data over a well pad. Recent studies with our cNN emphasize the importance of tracking wind speeds and directions at fine resolution ( 1 second), and accounting for variations in background CH4 levels. A few cases illustrate the importance of sufficiently long monitoring; short monitoring may not provide enough information to determine accurately a leak location or strength, mainly because of short-term unfavorable wind directions and choice of sampling configuration. Length of multiport duty cycle sampling and sample line flush time as well as number and placement of monitoring sensors can significantly impact ability to locate and quantify leaks. Source location error at less than 10% requires about 30 or more training cases.

Short-range airborne transmission of expiratory droplets between two people.

PubMed

Liu, L; Li, Y; Nielsen, P V; Wei, J; Jensen, R L

2017-03-01

The occurrence of close proximity infection for many respiratory diseases is often cited as evidence of large droplet and/or close contact transmission. We explored interpersonal exposure of exhaled droplets and droplet nuclei of two standing thermal manikins as affected by distance, humidity, ventilation, and breathing mode. Under the specific set of conditions studied, we found a substantial increase in airborne exposure to droplet nuclei exhaled by the source manikin when a susceptible manikin is within about 1.5 m of the source manikin, referred to as the proximity effect. The threshold distance of about 1.5 m distinguishes the two basic transmission processes of droplets and droplet nuclei, that is, short-range modes and the long-range airborne route. The short-range modes include both the conventional large droplet route and the newly defined short-range airborne transmission. We thus reveal that transmission occurring in close proximity to the source patient includes both droplet-borne (large droplet) and short-range airborne routes, in addition to the direct deposition of large droplets on other body surfaces. The mechanisms of the droplet-borne and short-range airborne routes are different; their effective control methods also differ. Neither the current droplet precautions nor dilution ventilation prevents short-range airborne transmission, so new control methods are needed. © 2016 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd.

BROADBAND RADIO POLARIMETRY AND FARADAY ROTATION OF 563 EXTRAGALACTIC RADIO SOURCES

DOE Office of Scientific and Technical Information (OSTI.GOV)

Anderson, C. S.; Gaensler, B. M.; Feain, I. J.

2015-12-10

We present a broadband spectropolarimetric survey of 563 discrete, mostly unresolved radio sources between 1.3 and 2.0 GHz using data taken with the Australia Telescope Compact Array. We have used rotation-measure synthesis to identify Faraday-complex polarized sources, those objects whose frequency-dependent polarization behavior indicates the presence of material possessing complicated magnetoionic structure along the line of sight (LOS). For sources classified as Faraday-complex, we have analyzed a number of their radio and multiwavelength properties to determine whether they differ from Faraday-simple polarized sources (sources for which LOS magnetoionic structures are comparatively simple) in these properties. We use this information tomore » constrain the physical nature of the magnetoionic structures responsible for generating the observed complexity. We detect Faraday complexity in 12% of polarized sources at ∼1′ resolution, but we demonstrate that underlying signal-to-noise limitations mean the true percentage is likely to be significantly higher in the polarized radio source population. We find that the properties of Faraday-complex objects are diverse, but that complexity is most often associated with depolarization of extended radio sources possessing a relatively steep total intensity spectrum. We find an association between Faraday complexity and LOS structure in the Galactic interstellar medium (ISM) and claim that a significant proportion of the Faraday complexity we observe may be generated at interfaces of the ISM associated with ionization fronts near neutral hydrogen structures. Galaxy cluster environments and internally generated Faraday complexity provide possible alternative explanations in some cases.« less

Ice Complex permafrost of MIS5 age in the Dmitry Laptev Strait coastal region (East Siberian Arctic)

NASA Astrophysics Data System (ADS)

Wetterich, Sebastian; Tumskoy, Vladimir; Rudaya, Natalia; Kuznetsov, Vladislav; Maksimov, Fedor; Opel, Thomas; Meyer, Hanno; Andreev, Andrei A.; Schirrmeister, Lutz

2016-09-01

Ice Complex deposits (locally known as the Buchchagy Ice Complex) are exposed at both coasts of the East Siberian Dmitry Laptev Strait and preserved below the Yedoma Ice Complex that formed during MIS3 and MIS2 (Marine Isotope Stage) and lateglacial-Holocene thermokarst deposits (MIS1). Radioisotope disequilibria (230Th/U) of peaty horizons date the Buchchagy Ice Complex deposition to 126 + 16/-13 kyr and 117 + 19/-14 kyr until 98 ± 5 kyr and 89 ± 5 kyr. The deposit is characterised by poorly-sorted medium-to-coarse silts with cryogenic structures of horizontal ice bands, lens-like, and lens-like reticulated segregation ice. Two peaty horizons within the Buchchagy Ice Complex and syngenetic ice wedges (2-4 m wide, up to 10 m high) are striking. The isotopic composition (δ18O, δD) of Buchchagy ice-wedge ice indicates winter conditions colder than during the MIS3 interstadial and warmer than during MIS2 stadial, and similar atmospheric winter moisture sources as during the MIS2 stadial. Buchchagy Ice Complex pollen spectra reveal tundra-steppe vegetation and harsher summer conditions than during the MIS3 interstadial and rather similar vegetation as during the MIS2 stadial. Short-term climatic variability during MIS5 is reflected in the record. Even though the regional chronostratigraphic relationship of the Buchchagy Ice Complex to the Last Interglacial remains unclear because numerical dating is widely lacking, the present study indicates permafrost (Ice Complex) formation during MIS5 sensu lato, and its preservation afterwards. Palaeoenvironmental insights into past climate and the periglacial landscape dynamics of arctic lowlands in eastern Siberia are deduced from the record.

Imaging the Ferron Member of the Mancos Shale formation using reprocessed high-resolution 2-D seismic reflection data: Emery County, Utah

USGS Publications Warehouse

Taylor, D.J.

2003-01-01

Late in 1982 and early in 1983, Arco Exploration contracted with Rocky Mountain Geophysical to acquired four high-resolution 2-D multichannel seismic reflection lines in Emery County, Utah. The primary goal in acquiring this data was an attempt to image the Ferron Member of the Upper Cretaceous Mancos Shale. Design of the high-resolution 2-D seismic reflection data acquisition used both a short geophone group interval and a short sample interval. An explosive energy source was used which provided an input pulse with broad frequency content and higher frequencies than typical non-explosive Vibroseis?? sources. Reflections produced by using this high-frequency energy source when sampled at a short interval are usually able to resolve shallow horizons that are relatively thin compared to those that can be resolved using more typical oil and gas exploration seismic reflection methods.The U.S. Geological Survey-Energy Resources Program, Geophysical Processing Group used the processing sequence originally applied by Arco in 1984 as a guide and experimented with processing steps applied in a different order using slightly different parameters in an effort to improve imaging the Ferron Member horizon. As with the Arco processed data there are sections along all four seismic lines where the data quality cannot be improved upon, and in fact the data quality is so poor that the Ferron horizon cannot be imaged at all.Interpretation of the seismic and core hole data indicates that the Ferron Member in the study area represent a deltaic sequence including delta front, lower delta plain, and upper delta plain environments. Correlating the depositional environments for the Ferron Member as indicated in the core holes with the thickness of Ferron Member suggests the presence of a delta lobe running from the northwest to the southeast through the study area. The presence of a deltaic channel system within the delta lobe complex might prove to be an interesting conventional exploration target along with the coal-bed methane production already proven in the area. ?? 2003 Elsevier B.V. All rights reserved.

Phenotypic Screening for Friedreich Ataxia Using Random shRNA Selection.

PubMed

Cotticelli, M Grazia; Acquaviva, Fabio; Xia, Shujuan; Kaur, Avinash; Wang, Yongping; Wilson, Robert B

2015-10-01

Friedreich ataxia (FRDA) is an autosomal recessive neuro- and cardio-degenerative disorder for which there are no proven effective treatments. FRDA is caused by decreased expression and/or function of the protein frataxin. Frataxin chaperones iron in the mitochondrial matrix and regulates the iron-sulfur cluster (ISC) assembly complex. ISCs are prosthetic groups critical for the function of the Krebs cycle and the mitochondrial electron transport chain. Decreased expression of frataxin is associated with decreased ISC assembly, mitochondrial iron accumulation, and increased oxidative stress, all of which contribute to mitochondrial dysfunction. In media with beta-hydroxybutyrate (BHB) as carbon source, primary FRDA fibroblasts grow poorly and/or lose viability over several days. We screened a random, short-hairpin-RNA (shRNA)-expressing library in primary FRDA fibroblasts and identified two shRNAs that reverse the growth/viability defect in BHB media. One of these two clones increases frataxin expression in primary FRDA fibroblasts, either as a vector-expressed shRNA or as a transfected short-interfering RNA (siRNA). © 2015 Society for Laboratory Automation and Screening.

Motion correction for passive radiation imaging of small vessels in ship-to-ship inspections

NASA Astrophysics Data System (ADS)

Ziock, K. P.; Boehnen, C. B.; Ernst, J. M.; Fabris, L.; Hayward, J. P.; Karnowski, T. P.; Paquit, V. C.; Patlolla, D. R.; Trombino, D. G.

2016-01-01

Passive radiation detection remains one of the most acceptable means of ascertaining the presence of illicit nuclear materials. In maritime applications it is most effective against small to moderately sized vessels, where attenuation in the target vessel is of less concern. Unfortunately, imaging methods that can remove source confusion, localize a source, and avoid other systematic detection issues cannot be easily applied in ship-to-ship inspections because relative motion of the vessels blurs the results over many pixels, significantly reducing system sensitivity. This is particularly true for the smaller watercraft, where passive inspections are most valuable. We have developed a combined gamma-ray, stereo visible-light imaging system that addresses this problem. Data from the stereo imager are used to track the relative location and orientation of the target vessel in the field of view of a coded-aperture gamma-ray imager. Using this information, short-exposure gamma-ray images are projected onto the target vessel using simple tomographic back-projection techniques, revealing the location of any sources within the target. The complex autonomous tracking and image reconstruction system runs in real time on a 48-core workstation that deploys with the system.

Motion correction for passive radiation imaging of small vessels in ship-to-ship inspections

DOE PAGES

Ziock, Klaus -Peter; Boehnen, Chris Bensing; Ernst, Joseph M.; ...

2015-09-05

Passive radiation detection remains one of the most acceptable means of ascertaining the presence of illicit nuclear materials. In maritime applications it is most effective against small to moderately sized vessels, where attenuation in the target vessel is of less concern. Unfortunately, imaging methods that can remove source confusion, localize a source, and avoid other systematic detection issues cannot be easily applied in ship-to-ship inspections because relative motion of the vessels blurs the results over many pixels, significantly reducing system sensitivity. This is particularly true for the smaller watercraft, where passive inspections are most valuable. We have developed a combinedmore » gamma-ray, stereo visible-light imaging system that addresses this problem. Data from the stereo imager are used to track the relative location and orientation of the target vessel in the field of view of a coded-aperture gamma-ray imager. Using this information, short-exposure gamma-ray images are projected onto the target vessel using simple tomographic back-projection techniques, revealing the location of any sources within the target. Here,the complex autonomous tracking and image reconstruction system runs in real time on a 48-core workstation that deploys with the system.« less

Frequency standard stability for Doppler measurements on-board the shuttle

NASA Technical Reports Server (NTRS)

Harton, P. L.

1974-01-01

The short and long term stability characteristics of crystal and atomic standards are described. Emphasis is placed on crystal oscillators because of the selection which was made for the shuttle baseline and the complexities which are introduced by the shuttle environment. Attention is given, first, to the definitions of stability and the application of these definitions to the shuttle system and its mission. Data from time domain measurements are used to illustrate the definitions. Results of a literature survey to determine environmental effects on frequency reference sources are then presented. Finally, methods of standard frequency dissemination over radio frequency carriers are noted as a possible means of measuring absolute accuracy and long term stability characteristics during on one way Doppler equipment.

Homologation chemistry with nucleophilic α-substituted organometallic reagents: chemocontrol, new concepts and (solved) challenges.

PubMed

Castoldi, Laura; Monticelli, Serena; Senatore, Raffaele; Ielo, Laura; Pace, Vittorio

2018-05-31

The transfer of a reactive nucleophilic CH2X unit into a preformed bond enables the introduction of a fragment featuring the exact and desired degree of functionalization through a single synthetic operation. The instability of metallated α-organometallic species often poses serious questions regarding the practicability of using this conceptually intuitive and simple approach for forming C-C or C-heteroatom bonds. A deep understanding of processes regulating the formation of these nucleophiles is a precious source of inspiration not only for successfully applying theoretically feasible transformations (i.e. determining how to employ a given reagent), but also for designing new reactions which ultimately lead to the introduction of molecular complexity via short experimental sequences.

Short-Term Memory Stages in Sign vs. Speech: The Source of the Serial Span Discrepancy

ERIC Educational Resources Information Center

Hall, Matthew L.; Bavelier, Daphne

2011-01-01

Speakers generally outperform signers when asked to recall a list of unrelated verbal items. This phenomenon is well established, but its source has remained unclear. In this study, we evaluate the relative contribution of the three main processing stages of short-term memory--perception, encoding, and recall--in this effect. The present study…

76 FR 50115 - Airworthiness Directives; Fokker Services B.V. Model F.28 Mark 1000, 2000, 3000, and 4000 Airplanes

Federal Register 2010, 2011, 2012, 2013, 2014

2011-08-12

... float switch wiring. Such a short circuit may result in an ignition source in the tank vapour space..., 1200 New Jersey Avenue, SE., Washington, DC. FOR FURTHER INFORMATION CONTACT: Tom Rodriguez, Aerospace... float switch wiring. Such a short circuit may result in an ignition source in the tank vapour space...

Neuroimaging Evidence for Agenda-Dependent Monitoring of Different Features during Short-Term Source Memory Tests

ERIC Educational Resources Information Center

Mitchell, Karen J.; Raye, Carol L.; McGuire, Joseph T.; Frankel, Hillary; Greene, Erich J.; Johnson, Marcia K.

2008-01-01

A short-term source monitoring procedure with functional magnetic resonance imaging assessed neural activity when participants made judgments about the format of 1 of 4 studied items (picture, word), the encoding task performed (cost, place), or whether an item was old or new. The results support findings from long-term memory studies showing that…

Visual short-term memory capacity for simple and complex objects.

PubMed

Luria, Roy; Sessa, Paola; Gotler, Alex; Jolicoeur, Pierre; Dell'Acqua, Roberto

2010-03-01

Does the capacity of visual short-term memory (VSTM) depend on the complexity of the objects represented in memory? Although some previous findings indicated lower capacity for more complex stimuli, other results suggest that complexity effects arise during retrieval (due to errors in the comparison process with what is in memory) that is not related to storage limitations of VSTM, per se. We used ERPs to track neuronal activity specifically related to retention in VSTM by measuring the sustained posterior contralateral negativity during a change detection task (which required detecting if an item was changed between a memory and a test array). The sustained posterior contralateral negativity, during the retention interval, was larger for complex objects than for simple objects, suggesting that neurons mediating VSTM needed to work harder to maintain more complex objects. This, in turn, is consistent with the view that VSTM capacity depends on complexity.

Engineered short branched-chain acyl-CoA synthesis in E. coli and acylation of chloramphenicol to branched-chain derivatives.

PubMed

Bi, Huiping; Bai, Yanfen; Cai, Tao; Zhuang, Yibin; Liang, Xiaomei; Zhang, Xueli; Liu, Tao; Ma, Yanhe

2013-12-01

Short branched-chain acyl-CoAs are important building blocks for a wide variety of pharmaceutically valuable natural products. Escherichia coli has been used as a heterologous host for the production of a variety of natural compounds for many years. In the current study, we engineered synthesis of isobutyryl-CoA and isovaleryl-CoA from glucose in E. coli by integration of the branched-chain α-keto acid dehydrogenase complex from Streptomyces avermitilis. In the presence of the chloramphenicol acetyltransferase (cat) gene, chloramphenicol was converted to both chloramphenicol-3-isobutyrate and chloramphenicol-3-isovalerate by the recombinant E. coli strains, which suggested successful synthesis of isobutyryl-CoA and isovaleryl-CoA. Furthermore, we improved the α-keto acid precursor supply by overexpressing the alsS gene from Bacillus subtilis and the ilvC and ilvD genes from E. coli and thus enhanced the synthesis of short branched-chain acyl-CoAs. By feeding 25 mg/L chloramphenicol, 2.96 ± 0.06 mg/L chloramphenicol-3-isobutyrate and 3.94 ± 0.06 mg/L chloramphenicol-3-isovalerate were generated by the engineered E. coli strain, which indicated efficient biosynthesis of short branched-chain acyl-CoAs. HPLC analysis showed that the most efficient E. coli strain produced 80.77 ± 3.83 nmol/g wet weight isovaleryl-CoA. To our knowledge, this is the first report of production of short branched-chain acyl-CoAs in E. coli and opens a way to biosynthesize various valuable natural compounds based on these special building blocks from renewable carbon sources.

Quantifying complexity of financial short-term time series by composite multiscale entropy measure

NASA Astrophysics Data System (ADS)

Niu, Hongli; Wang, Jun

2015-05-01

It is significant to study the complexity of financial time series since the financial market is a complex evolved dynamic system. Multiscale entropy is a prevailing method used to quantify the complexity of a time series. Due to its less reliability of entropy estimation for short-term time series at large time scales, a modification method, the composite multiscale entropy, is applied to the financial market. To qualify its effectiveness, its applications in the synthetic white noise and 1 / f noise with different data lengths are reproduced first in the present paper. Then it is introduced for the first time to make a reliability test with two Chinese stock indices. After conducting on short-time return series, the CMSE method shows the advantages in reducing deviations of entropy estimation and demonstrates more stable and reliable results when compared with the conventional MSE algorithm. Finally, the composite multiscale entropy of six important stock indices from the world financial markets is investigated, and some useful and interesting empirical results are obtained.

Local community detection as pattern restoration by attractor dynamics of recurrent neural networks.

PubMed

Okamoto, Hiroshi

2016-08-01

Densely connected parts in networks are referred to as "communities". Community structure is a hallmark of a variety of real-world networks. Individual communities in networks form functional modules of complex systems described by networks. Therefore, finding communities in networks is essential to approaching and understanding complex systems described by networks. In fact, network science has made a great deal of effort to develop effective and efficient methods for detecting communities in networks. Here we put forward a type of community detection, which has been little examined so far but will be practically useful. Suppose that we are given a set of source nodes that includes some (but not all) of "true" members of a particular community; suppose also that the set includes some nodes that are not the members of this community (i.e., "false" members of the community). We propose to detect the community from this "imperfect" and "inaccurate" set of source nodes using attractor dynamics of recurrent neural networks. Community detection by the proposed method can be viewed as restoration of the original pattern from a deteriorated pattern, which is analogous to cue-triggered recall of short-term memory in the brain. We demonstrate the effectiveness of the proposed method using synthetic networks and real social networks for which correct communities are known. Copyright © 2016 Elsevier Ireland Ltd. All rights reserved.

Combining Ultracentrifugation and Peptide Termini Group-specific Immunoprecipitation for Multiplex Plasma Protein Analysis

PubMed Central

Volk, Sonja; Schreiber, Thomas D.; Eisen, David; Wiese, Calvin; Planatscher, Hannes; Pynn, Christopher J.; Stoll, Dieter; Templin, Markus F.; Joos, Thomas O.; Pötz, Oliver

2012-01-01

Blood plasma is a valuable source of potential biomarkers. However, its complexity and the huge dynamic concentration range of its constituents complicate its analysis. To tackle this problem, an immunoprecipitation strategy was employed using antibodies directed against short terminal epitope tags (triple X proteomics antibodies), which allow the enrichment of groups of signature peptides derived from trypsin-digested plasma. Isolated signature peptides are subsequently detected using MALDI-TOF/TOF mass spectrometry. Sensitivity of the immunoaffinity approach was, however, compromised by the presence of contaminant peaks derived from the peptides of nontargeted high abundant proteins. A closer analysis of the enrichment strategy revealed nonspecific peptide binding to the solid phase affinity matrix as the major source of the contaminating peptides. We therefore implemented a sucrose density gradient ultracentrifugation separation step into the procedure. This yielded a 99% depletion of contaminating peptides from a sucrose fraction containing 70% of the peptide-antibody complexes and enabled the detection of the previously undetected low abundance protein filamin-A. Assessment of this novel approach using 15 different triple X proteomics antibodies demonstrated a more consistent detection of a greater number of targeted peptides and a significant reduction in the intensity of nonspecific peptides. Ultracentrifugation coupled with immunoaffinity MS approaches presents a powerful tool for multiplexed plasma protein analysis without the requirement for demanding liquid chromatography separation techniques. PMID:22527512

The use of low altitude satellite data bases for modeling of core and crustal fields and the separation of external and internal fields

NASA Astrophysics Data System (ADS)

Langel, R. A.

1993-01-01

The near-Earth geomagnetic field is a complex combination of fields from a variety of sources within and external to the Earth. These fields have a complex characterization in space and time such that if the field were known at all times and positions external to the Earth's surface it would be possible to separate the measured field into its component parts except for the low degree field from the crust and the high degree field from the core. In practice the measurements come far short of such a space-time characterization. Because of this it is useful to keep in mind several principles when working with these data. These principles are: (1) know the enemy, i.e., understand as much as possible about all the sources, (2) don't expect a boy to do a man's job, i.e., recognize the limitations of the data, (3) use some common sense, and, (4) recognize personal prejudice. Examples are given from published and unpublished results to illustrate how these principles have been, and ought to be, applied. At the same time, suggestions are made as to how future analyses might proceed. These examples are drawn first of all from the way the main field and near-Earth magnetospheric fields are modeled, then from analyses of residuals from such models resulting from ionospheric and crustal fields.

Modelling single shot damage thresholds of multilayer optics for high-intensity short-wavelength radiation sources.

PubMed

Loch, R A; Sobierajski, R; Louis, E; Bosgra, J; Bijkerk, F

2012-12-17

The single shot damage thresholds of multilayer optics for high-intensity short-wavelength radiation sources are theoretically investigated, using a model developed on the basis of experimental data obtained at the FLASH and LCLS free electron lasers. We compare the radiation hardness of commonly used multilayer optics and propose new material combinations selected for a high damage threshold. Our study demonstrates that the damage thresholds of multilayer optics can vary over a large range of incidence fluences and can be as high as several hundreds of mJ/cm(2). This strongly suggests that multilayer mirrors are serious candidates for damage resistant optics. Especially, multilayer optics based on Li(2)O spacers are very promising for use in current and future short-wavelength radiation sources.

Prevalence of microbiological contaminants in groundwater sources and risk factor assessment in Juba, South Sudan.

PubMed

Engström, Emma; Balfors, Berit; Mörtberg, Ulla; Thunvik, Roger; Gaily, Tarig; Mangold, Mikael

2015-05-15

In low-income regions, drinking water is often derived from groundwater sources, which might spread diarrheal disease if they are microbiologically polluted. This study aimed to investigate the occurrence of fecal contamination in 147 improved groundwater sources in Juba, South Sudan and to assess potential contributing risk factors, based on bivariate statistical analysis. Thermotolerant coliforms (TTCs) were detected in 66% of the investigated sources, including 95 boreholes, breaching the health-based recommendations for drinking water. A significant association (p<0.05) was determined between the presence of TTCs and the depth of cumulative, long-term prior precipitation (both within the previous five days and within the past month). No such link was found to short-term rainfall, the presence of latrines or damages in the borehole apron. However, the risk factor analysis further suggested, to a lesser degree, that the local topography and on-site hygiene were additionally significant. In summary, the analysis indicated that an important contamination mechanism was fecal pollution of the contributing groundwater, which was unlikely due to the presence of latrines; instead, infiltration from contaminated surface water was more probable. The reduction in fecal sources in the environment in Juba is thus recommended, for example, through constructing latrines or designating protection areas near water sources. The study results contribute to the understanding of microbiological contamination of groundwater sources in areas with low incomes and high population densities, tropical climates and weathered basement complex environments, which are common in urban sub-Saharan Africa. Copyright © 2015 Elsevier B.V. All rights reserved.

Effects of stress on heart rate complexity--a comparison between short-term and chronic stress.

PubMed

Schubert, C; Lambertz, M; Nelesen, R A; Bardwell, W; Choi, J-B; Dimsdale, J E

2009-03-01

This study examined chronic and short-term stress effects on heart rate variability (HRV), comparing time, frequency and phase domain (complexity) measures in 50 healthy adults. The hassles frequency subscale of the combined hassles and uplifts scale (CHUS) was used to measure chronic stress. Short-term stressor reactivity was assessed with a speech task. HRV measures were determined via surface electrocardiogram (ECG). Because respiration rate decreased during the speech task (p<.001), this study assessed the influence of respiration rate changes on the effects of interest. A series of repeated-measures analyses of covariance (ANCOVA) with Bonferroni adjustment revealed that short-term stress decreased HR D2 (calculated via the pointwise correlation dimension PD2) (p<.001), but increased HR mean (p<.001), standard deviation of R-R (SDRR) intervals (p<.001), low (LF) (p<.001) and high frequency band power (HF) (p=.009). Respiratory sinus arrhythmia (RSA) and LF/HF ratio did not change under short-term stress. Partial correlation adjusting for respiration rate showed that HR D2 was associated with chronic stress (r=-.35, p=.019). Differential effects of chronic and short-term stress were observed on several HRV measures. HR D2 decreased under both stress conditions reflecting lowered functionality of the cardiac pacemaker. The results confirm the importance of complexity metrics in modern stress research on HRV.

Wave field synthesis of moving virtual sound sources with complex radiation properties.

PubMed

Ahrens, Jens; Spors, Sascha

2011-11-01

An approach to the synthesis of moving virtual sound sources with complex radiation properties in wave field synthesis is presented. The approach exploits the fact that any stationary sound source of finite spatial extent radiates spherical waves at sufficient distance. The angular dependency of the radiation properties of the source under consideration is reflected by the amplitude and phase distribution on the spherical wave fronts. The sound field emitted by a uniformly moving monopole source is derived and the far-field radiation properties of the complex virtual source under consideration are incorporated in order to derive a closed-form expression for the loudspeaker driving signal. The results are illustrated via numerical simulations of the synthesis of the sound field of a sample moving complex virtual source.

When probabilistic seismic hazard climbs volcanoes: the Mt. Etna case, Italy - Part 1: Model components for sources parameterization

NASA Astrophysics Data System (ADS)

Azzaro, Raffaele; Barberi, Graziella; D'Amico, Salvatore; Pace, Bruno; Peruzza, Laura; Tuvè, Tiziana

2017-11-01

The volcanic region of Mt. Etna (Sicily, Italy) represents a perfect lab for testing innovative approaches to seismic hazard assessment. This is largely due to the long record of historical and recent observations of seismic and tectonic phenomena, the high quality of various geophysical monitoring and particularly the rapid geodynamics clearly demonstrate some seismotectonic processes. We present here the model components and the procedures adopted for defining seismic sources to be used in a new generation of probabilistic seismic hazard assessment (PSHA), the first results and maps of which are presented in a companion paper, Peruzza et al. (2017). The sources include, with increasing complexity, seismic zones, individual faults and gridded point sources that are obtained by integrating geological field data with long and short earthquake datasets (the historical macroseismic catalogue, which covers about 3 centuries, and a high-quality instrumental location database for the last decades). The analysis of the frequency-magnitude distribution identifies two main fault systems within the volcanic complex featuring different seismic rates that are controlled essentially by volcano-tectonic processes. We discuss the variability of the mean occurrence times of major earthquakes along the main Etnean faults by using an historical approach and a purely geologic method. We derive a magnitude-size scaling relationship specifically for this volcanic area, which has been implemented into a recently developed software tool - FiSH (Pace et al., 2016) - that we use to calculate the characteristic magnitudes and the related mean recurrence times expected for each fault. Results suggest that for the Mt. Etna area, the traditional assumptions of uniform and Poissonian seismicity can be relaxed; a time-dependent fault-based modeling, joined with a 3-D imaging of volcano-tectonic sources depicted by the recent instrumental seismicity, can therefore be implemented in PSHA maps. They can be relevant for the retrofitting of the existing building stock and for driving risk reduction interventions. These analyses do not account for regional M > 6 seismogenic sources which dominate the hazard over long return times (≥ 500 years).

Nonlinearities of heart rate variability in animal models of impaired cardiac control: contribution of different time scales.

PubMed

Silva, Luiz Eduardo Virgilio; Lataro, Renata Maria; Castania, Jaci Airton; Silva, Carlos Alberto Aguiar; Salgado, Helio Cesar; Fazan, Rubens; Porta, Alberto

2017-08-01

Heart rate variability (HRV) has been extensively explored by traditional linear approaches (e.g., spectral analysis); however, several studies have pointed to the presence of nonlinear features in HRV, suggesting that linear tools might fail to account for the complexity of the HRV dynamics. Even though the prevalent notion is that HRV is nonlinear, the actual presence of nonlinear features is rarely verified. In this study, the presence of nonlinear dynamics was checked as a function of time scales in three experimental models of rats with different impairment of the cardiac control: namely, rats with heart failure (HF), spontaneously hypertensive rats (SHRs), and sinoaortic denervated (SAD) rats. Multiscale entropy (MSE) and refined MSE (RMSE) were chosen as the discriminating statistic for the surrogate test utilized to detect nonlinearity. Nonlinear dynamics is less present in HF animals at both short and long time scales compared with controls. A similar finding was found in SHR only at short time scales. SAD increased the presence of nonlinear dynamics exclusively at short time scales. Those findings suggest that a working baroreflex contributes to linearize HRV and to reduce the likelihood to observe nonlinear components of the cardiac control at short time scales. In addition, an increased sympathetic modulation seems to be a source of nonlinear dynamics at long time scales. Testing nonlinear dynamics as a function of the time scales can provide a characterization of the cardiac control complementary to more traditional markers in time, frequency, and information domains. NEW & NOTEWORTHY Although heart rate variability (HRV) dynamics is widely assumed to be nonlinear, nonlinearity tests are rarely used to check this hypothesis. By adopting multiscale entropy (MSE) and refined MSE (RMSE) as the discriminating statistic for the nonlinearity test, we show that nonlinear dynamics varies with time scale and the type of cardiac dysfunction. Moreover, as complexity metrics and nonlinearities provide complementary information, we strongly recommend using the test for nonlinearity as an additional index to characterize HRV. Copyright © 2017 the American Physiological Society.

Shaped cathodes for the production of ultra-short multi-electron pulses

PubMed Central

Petruk, Ariel Alcides; Pichugin, Kostyantyn; Sciaini, Germán

2017-01-01

An electrostatic electron source design capable of producing sub-20 femtoseconds (rms) multi-electron pulses is presented. The photoelectron gun concept builds upon geometrical electric field enhancement at the cathode surface. Particle tracer simulations indicate the generation of extremely short bunches even beyond 40 cm of propagation. Comparisons with compact electron sources commonly used for femtosecond electron diffraction are made. PMID:28191483

Can positive matrix factorization help to understand patterns of organic trace gases at the continental Global Atmosphere Watch site Hohenpeissenberg?

NASA Astrophysics Data System (ADS)

Leuchner, M.; Gubo, S.; Schunk, C.; Wastl, C.; Kirchner, M.; Menzel, A.; Plass-Dülmer, C.

2015-02-01

From the rural Global Atmosphere Watch (GAW) site Hohenpeissenberg in the pre-alpine area of southern Germany, a data set of 24 C2-C8 non-methane hydrocarbons over a period of 7 years was analyzed. Receptor modeling was performed by positive matrix factorization (PMF) and the resulting factors were interpreted with respect to source profiles and photochemical aging. Differing from other studies, no direct source attribution was intended because, due to chemistry along transport, mass conservation from source to receptor is not given. However, at remote sites such as Hohenpeissenberg, the observed patterns of non-methane hydrocarbons can be derived from combinations of factors determined by PMF. A six-factor solution showed high stability and the most plausible results. In addition to a biogenic and a background factor of very stable compounds, four additional anthropogenic factors were resolved that could be divided into two short- and two long-lived patterns from evaporative sources/natural gas leakage and incomplete combustion processes. The volume or mass contribution at the site over the entire period was, in decreasing order, from the following factor categories: background, gas leakage and long-lived evaporative, residential heating and long-lived combustion, short-lived evaporative, short-lived combustion, and biogenic. The importance with respect to reactivity contribution was generally in reverse order, with the biogenic and the short-lived combustion factors contributing most. The seasonality of the factors was analyzed and compared to results of a simple box model using constant emissions and the photochemical decay calculated from the measured annual cycles of OH radicals and ozone. Two of the factors, short-lived combustion and gas leakage/long-lived evaporative, showed winter/summer ratios of about 9 and 7, respectively, as expected from constant source estimations. Contrarily, the short-lived evaporative emissions were about 3 times higher in summer than in winter, while residential heating/long-lived combustion emissions were about 2 times higher in winter than in summer.

Are Complexity Metrics Reliable in Assessing HRV Control in Obese Patients During Sleep?

PubMed

Cabiddu, Ramona; Trimer, Renata; Borghi-Silva, Audrey; Migliorini, Matteo; Mendes, Renata G; Oliveira, Antonio D; Costa, Fernando S M; Bianchi, Anna M

2015-01-01

Obesity is associated with cardiovascular mortality. Linear methods, including time domain and frequency domain analysis, are normally applied on the heart rate variability (HRV) signal to investigate autonomic cardiovascular control, whose imbalance might promote cardiovascular disease in these patients. However, given the cardiac activity non-linearities, non-linear methods might provide better insight. HRV complexity was hereby analyzed during wakefulness and different sleep stages in healthy and obese subjects. Given the short duration of each sleep stage, complexity measures, normally extracted from long-period signals, needed be calculated on short-term signals. Sample entropy, Lempel-Ziv complexity and detrended fluctuation analysis were evaluated and results showed no significant differences among the values calculated over ten-minute signals and longer durations, confirming the reliability of such analysis when performed on short-term signals. Complexity parameters were extracted from ten-minute signal portions selected during wakefulness and different sleep stages on HRV signals obtained from eighteen obese patients and twenty controls. The obese group presented significantly reduced complexity during light and deep sleep, suggesting a deficiency in the control mechanisms integration during these sleep stages. To our knowledge, this study reports for the first time on how the HRV complexity changes in obesity during wakefulness and sleep. Further investigation is needed to quantify altered HRV impact on cardiovascular mortality in obesity.

Are Complexity Metrics Reliable in Assessing HRV Control in Obese Patients During Sleep?

PubMed Central

Cabiddu, Ramona; Trimer, Renata; Borghi-Silva, Audrey; Migliorini, Matteo; Mendes, Renata G.; Oliveira Jr., Antonio D.; Costa, Fernando S. M.; Bianchi, Anna M.

2015-01-01

Obesity is associated with cardiovascular mortality. Linear methods, including time domain and frequency domain analysis, are normally applied on the heart rate variability (HRV) signal to investigate autonomic cardiovascular control, whose imbalance might promote cardiovascular disease in these patients. However, given the cardiac activity non-linearities, non-linear methods might provide better insight. HRV complexity was hereby analyzed during wakefulness and different sleep stages in healthy and obese subjects. Given the short duration of each sleep stage, complexity measures, normally extracted from long-period signals, needed be calculated on short-term signals. Sample entropy, Lempel-Ziv complexity and detrended fluctuation analysis were evaluated and results showed no significant differences among the values calculated over ten-minute signals and longer durations, confirming the reliability of such analysis when performed on short-term signals. Complexity parameters were extracted from ten-minute signal portions selected during wakefulness and different sleep stages on HRV signals obtained from eighteen obese patients and twenty controls. The obese group presented significantly reduced complexity during light and deep sleep, suggesting a deficiency in the control mechanisms integration during these sleep stages. To our knowledge, this study reports for the first time on how the HRV complexity changes in obesity during wakefulness and sleep. Further investigation is needed to quantify altered HRV impact on cardiovascular mortality in obesity. PMID:25893856

A High-Power Broadband Terahertz Source Enabled by Three-Dimensional Light Confinement in a Plasmonic Nanocavity.

PubMed

Yardimci, Nezih Tolga; Cakmakyapan, Semih; Hemmati, Soroosh; Jarrahi, Mona

2017-06-23

The scope and potential uses of time-domain terahertz imaging and spectroscopy are mainly limited by the low optical-to-terahertz conversion efficiency of photoconductive terahertz sources. State-of-the-art photoconductive sources utilize short-carrier-lifetime semiconductors to recombine carriers that cannot contribute to efficient terahertz generation and cause additional thermal dissipation. Here, we present a novel photoconductive terahertz source that offers a significantly higher efficiency compared with terahertz sources fabricated on short-carrier-lifetime substrates. The key innovative feature of this source is the tight three-dimensional confinement of the optical pump beam around the terahertz nanoantennas that are used as radiating elements. This is achieved by means of a nanocavity formed by plasmonic structures and a distributed Bragg reflector. Consequently, almost all of the photo-generated carriers can be routed to the terahertz nanoantennas within a sub-picosecond time-scale. This results in a very strong, ultrafast current that drives the nanoantennas to produce broadband terahertz radiation. We experimentally demonstrate that this terahertz source can generate 4 mW pulsed terahertz radiation under an optical pump power of 720 mW over the 0.1-4 THz frequency range. This is the highest reported power level for terahertz radiation from a photoconductive terahertz source, representing more than an order of magnitude of enhancement in the optical-to-terahertz conversion efficiency compared with state-of-the-art photoconductive terahertz sources fabricated on short-carrier-lifetime substrates.

Low-frequency source parameters of twelve large earthquakes. M.S. Thesis

NASA Technical Reports Server (NTRS)

Harabaglia, Paolo

1993-01-01

A global survey of the low-frequency (1-21 mHz) source characteristics of large events are studied. We are particularly interested in events unusually enriched in low-frequency and in events with a short-term precursor. We model the source time function of 12 large earthquakes using teleseismic data at low frequency. For each event we retrieve the source amplitude spectrum in the frequency range between 1 and 21 mHz with the Silver and Jordan method and the phase-shift spectrum in the frequency range between 1 and 11 mHz with the Riedesel and Jordan method. We then model the source time function by fitting the two spectra. Two of these events, the 1980 Irpinia, Italy, and the 1983 Akita-Oki, Japan, are shallow-depth complex events that took place on multiple faults. In both cases the source time function has a length of about 100 seconds. By comparison Westaway and Jackson find 45 seconds for the Irpinia event and Houston and Kanamori about 50 seconds for the Akita-Oki earthquake. The three deep events and four of the seven intermediate-depth events are fast rupturing earthquakes. A single pulse is sufficient to model the source spectra in the frequency range of our interest. Two other intermediate-depth events have slower rupturing processes, characterized by a continuous energy release lasting for about 40 seconds. The last event is the intermediate-depth 1983 Peru-Ecuador earthquake. It was first recognized as a precursive event by Jordan. We model it with a smooth rupturing process starting about 2 minutes before the high frequency origin time superimposed to an impulsive source.

egs_brachy: a versatile and fast Monte Carlo code for brachytherapy

NASA Astrophysics Data System (ADS)

Chamberland, Marc J. P.; Taylor, Randle E. P.; Rogers, D. W. O.; Thomson, Rowan M.

2016-12-01

egs_brachy is a versatile and fast Monte Carlo (MC) code for brachytherapy applications. It is based on the EGSnrc code system, enabling simulation of photons and electrons. Complex geometries are modelled using the EGSnrc C++ class library and egs_brachy includes a library of geometry models for many brachytherapy sources, in addition to eye plaques and applicators. Several simulation efficiency enhancing features are implemented in the code. egs_brachy is benchmarked by comparing TG-43 source parameters of three source models to previously published values. 3D dose distributions calculated with egs_brachy are also compared to ones obtained with the BrachyDose code. Well-defined simulations are used to characterize the effectiveness of many efficiency improving techniques, both as an indication of the usefulness of each technique and to find optimal strategies. Efficiencies and calculation times are characterized through single source simulations and simulations of idealized and typical treatments using various efficiency improving techniques. In general, egs_brachy shows agreement within uncertainties with previously published TG-43 source parameter values. 3D dose distributions from egs_brachy and BrachyDose agree at the sub-percent level. Efficiencies vary with radionuclide and source type, number of sources, phantom media, and voxel size. The combined effects of efficiency-improving techniques in egs_brachy lead to short calculation times: simulations approximating prostate and breast permanent implant (both with (2 mm)3 voxels) and eye plaque (with (1 mm)3 voxels) treatments take between 13 and 39 s, on a single 2.5 GHz Intel Xeon E5-2680 v3 processor core, to achieve 2% average statistical uncertainty on doses within the PTV. egs_brachy will be released as free and open source software to the research community.

egs_brachy: a versatile and fast Monte Carlo code for brachytherapy.

PubMed

Chamberland, Marc J P; Taylor, Randle E P; Rogers, D W O; Thomson, Rowan M

2016-12-07

egs_brachy is a versatile and fast Monte Carlo (MC) code for brachytherapy applications. It is based on the EGSnrc code system, enabling simulation of photons and electrons. Complex geometries are modelled using the EGSnrc C++ class library and egs_brachy includes a library of geometry models for many brachytherapy sources, in addition to eye plaques and applicators. Several simulation efficiency enhancing features are implemented in the code. egs_brachy is benchmarked by comparing TG-43 source parameters of three source models to previously published values. 3D dose distributions calculated with egs_brachy are also compared to ones obtained with the BrachyDose code. Well-defined simulations are used to characterize the effectiveness of many efficiency improving techniques, both as an indication of the usefulness of each technique and to find optimal strategies. Efficiencies and calculation times are characterized through single source simulations and simulations of idealized and typical treatments using various efficiency improving techniques. In general, egs_brachy shows agreement within uncertainties with previously published TG-43 source parameter values. 3D dose distributions from egs_brachy and BrachyDose agree at the sub-percent level. Efficiencies vary with radionuclide and source type, number of sources, phantom media, and voxel size. The combined effects of efficiency-improving techniques in egs_brachy lead to short calculation times: simulations approximating prostate and breast permanent implant (both with (2 mm) 3 voxels) and eye plaque (with (1 mm) 3 voxels) treatments take between 13 and 39 s, on a single 2.5 GHz Intel Xeon E5-2680 v3 processor core, to achieve 2% average statistical uncertainty on doses within the PTV. egs_brachy will be released as free and open source software to the research community.

76 FR 28373 - Airworthiness Directives; Fokker Services B.V. Model F.28 Mark 1000, 2000, 3000, and 4000 Airplanes

Federal Register 2010, 2011, 2012, 2013, 2014

2011-05-17

..., under certain failure conditions, a short circuit may develop in the collector tank level float switch wiring. Such a short circuit may result in an ignition source in the tank vapour space. This condition..., a short circuit may develop in the collector tank level float switch wiring. Such a short circuit...

A new complexity measure for time series analysis and classification

NASA Astrophysics Data System (ADS)

Nagaraj, Nithin; Balasubramanian, Karthi; Dey, Sutirth

2013-07-01

Complexity measures are used in a number of applications including extraction of information from data such as ecological time series, detection of non-random structure in biomedical signals, testing of random number generators, language recognition and authorship attribution etc. Different complexity measures proposed in the literature like Shannon entropy, Relative entropy, Lempel-Ziv, Kolmogrov and Algorithmic complexity are mostly ineffective in analyzing short sequences that are further corrupted with noise. To address this problem, we propose a new complexity measure ETC and define it as the "Effort To Compress" the input sequence by a lossless compression algorithm. Here, we employ the lossless compression algorithm known as Non-Sequential Recursive Pair Substitution (NSRPS) and define ETC as the number of iterations needed for NSRPS to transform the input sequence to a constant sequence. We demonstrate the utility of ETC in two applications. ETC is shown to have better correlation with Lyapunov exponent than Shannon entropy even with relatively short and noisy time series. The measure also has a greater rate of success in automatic identification and classification of short noisy sequences, compared to entropy and a popular measure based on Lempel-Ziv compression (implemented by Gzip).

A generalized method for characterization of 235U and 239Pu content using short-lived fission product gamma spectroscopy

DOE PAGES

Knowles, Justin R.; Skutnik, Steven E.; Glasgow, David C.; ...

2016-06-23

Rapid non-destructive assay methods for trace fissile material analysis are needed in both nuclear forensics and safeguards communities. To address these needs, research at the High Flux Isotope Reactor Neutron Activation Analysis laboratory has developed a generalized non-destructive assay method to characterize materials containing fissile isotopes. This method relies on gamma-ray emissions from short-lived fission products and capitalizes off of differences in fission product yields to identify fissile compositions of trace material samples. Although prior work has explored the use of short-lived fission product gamma-ray measurements, the proposed method is the first to provide a holistic characterization of isotopic identification,more » mass ratios, and absolute mass determination. Successful single fissile isotope mass recoveries of less than 6% error have been conducted on standards of 235U and 239Pu as low as 12 nanograms in less than 10 minutes. Additionally, mixtures of fissile isotope standards containing 235U and 239Pu have been characterized as low as 229 nanograms of fissile mass with less than 12% error. The generalizability of this method is illustrated by evaluating different fissile isotopes, mixtures of fissile isotopes, and two different irradiation positions in the reactor. Furthermore, it is anticipated that this method will be expanded to characterize additional fissile nuclides, utilize various irradiation sources, and account for increasingly complex sample matrices.« less

A generalized method for characterization of 235U and 239Pu content using short-lived fission product gamma spectroscopy

DOE Office of Scientific and Technical Information (OSTI.GOV)

Knowles, Justin R.; Skutnik, Steven E.; Glasgow, David C.

Rapid non-destructive assay methods for trace fissile material analysis are needed in both nuclear forensics and safeguards communities. To address these needs, research at the High Flux Isotope Reactor Neutron Activation Analysis laboratory has developed a generalized non-destructive assay method to characterize materials containing fissile isotopes. This method relies on gamma-ray emissions from short-lived fission products and capitalizes off of differences in fission product yields to identify fissile compositions of trace material samples. Although prior work has explored the use of short-lived fission product gamma-ray measurements, the proposed method is the first to provide a holistic characterization of isotopic identification,more » mass ratios, and absolute mass determination. Successful single fissile isotope mass recoveries of less than 6% error have been conducted on standards of 235U and 239Pu as low as 12 nanograms in less than 10 minutes. Additionally, mixtures of fissile isotope standards containing 235U and 239Pu have been characterized as low as 229 nanograms of fissile mass with less than 12% error. The generalizability of this method is illustrated by evaluating different fissile isotopes, mixtures of fissile isotopes, and two different irradiation positions in the reactor. Furthermore, it is anticipated that this method will be expanded to characterize additional fissile nuclides, utilize various irradiation sources, and account for increasingly complex sample matrices.« less

Temporal narrowing of neutrons produced by high-intensity short-pulse lasers

DOE PAGES

Higginson, D. P.; Vassura, L.; Gugiu, M. M.; ...

2015-07-28

The production of neutron beams having short temporal duration is studied using ultraintense laser pulses. Laser-accelerated protons are spectrally filtered using a laser-triggered microlens to produce a short duration neutron pulse via nuclear reactions induced in a converter material (LiF). This produces a ~3 ns duration neutron pulse with 10 4 n/MeV/sr/shot at 0.56 m from the laser-irradiated proton source. The large spatial separation between the neutron production and the proton source allows for shielding from the copious and undesirable radiation resulting from the laser-plasma interaction. Finally, this neutron pulse compares favorably to the duration of conventional accelerator sources andmore » should scale up with, present and future, higher energy laser facilities to produce brighter and shorter neutron beams for ultrafast probing of dense materials.« less

Development and application of a standardized flow measurement uncertainty analysis framework to various low-head short-converging intake types across the United States federal hydropower fleet

DOE Office of Scientific and Technical Information (OSTI.GOV)

Smith, Brennan T

2015-01-01

Turbine discharges at low-head short converging intakes are difficult to measure accurately. The proximity of the measurement section to the intake entrance admits large uncertainties related to asymmetry of the velocity profile, swirl, and turbulence. Existing turbine performance codes [10, 24] do not address this special case and published literature is largely silent on rigorous evaluation of uncertainties associated with this measurement context. The American Society of Mechanical Engineers (ASME) Committee investigated the use of Acoustic transit time (ATT), Acoustic scintillation (AS), and Current meter (CM) in a short converging intake at the Kootenay Canal Generating Station in 2009. Basedmore » on their findings, a standardized uncertainty analysis (UA) framework for velocity-area method (specifically for CM measurements) is presented in this paper given the fact that CM is still the most fundamental and common type of measurement system. Typical sources of systematic and random errors associated with CM measurements are investigated, and the major sources of uncertainties associated with turbulence and velocity fluctuations, numerical velocity integration technique (bi-cubic spline), and the number and placement of current meters are being considered for an evaluation. Since the velocity measurements in a short converging intake are associated with complex nonlinear and time varying uncertainties (e.g., Reynolds stress in fluid dynamics), simply applying the law of propagation of uncertainty is known to overestimate the measurement variance while the Monte Carlo method does not. Therefore, a pseudo-Monte Carlo simulation method (random flow generation technique [8]) which was initially developed for the purpose of establishing upstream or initial conditions in the Large-Eddy Simulation (LES) and the Direct Numerical Simulation (DNS) is used to statistically determine uncertainties associated with turbulence and velocity fluctuations. This technique is then combined with a bi-cubic spline interpolation method which converts point velocities into a continuous velocity distribution over the measurement domain. Subsequently the number and placement of current meters are simulated to investigate the accuracy of the estimated flow rates using the numerical velocity-area integration method outlined in ISO 3354 [12]. The authors herein consider that statistics on generated flow rates processed with bi-cubic interpolation and sensor simulations are the combined uncertainties which already accounted for the effects of all those three uncertainty sources. A preliminary analysis based on the current meter data obtained through an upgrade acceptance test of a single unit located in a mainstem plant has been presented.« less

Subpicosecond Electrooptic Sampling

DTIC Science & Technology

1993-01-01

22GHz, limited by the photodector and spectrum analzyer used as the receiver. The more interesting type of system, and the type we have with the...economical, low-noise, diode-pumped, infrared wavelength short-pulsed sources. This need is addressed in the first part of the thesis, where a 20 GHz...pumped, infrared wavelength short-pulsed sources. In recent years this has led to increased interest in mode-locking of diode-pumped Chapter 1

Meteoroid Environment Modeling: the Meteoroid Engineering Model and Shower Forecasting

NASA Technical Reports Server (NTRS)

Moorhead, Althea V.

2017-01-01

INTRODUCTION: The meteoroid environment is often divided conceptually into meteor showers and the sporadic meteor background. It is commonly but incorrectly assumed that meteoroid impacts primarily occur during meteor showers; instead, the vast majority of hazardous meteoroids belong to the sporadic complex. Unlike meteor showers, which persist for a few hours to a few weeks, sporadic meteoroids impact the Earth's atmosphere and spacecraft throughout the year. The Meteoroid Environment Office (MEO) has produced two environment models to handle these cases: the Meteoroid Engineering Model (MEM) and an annual meteor shower forecast. The sporadic complex, despite its year-round activity, is not isotropic in its directionality. Instead, their apparent points of origin, or radiants, are organized into groups called "sources". The speed, directionality, and size distribution of these sporadic sources are modeled by the Meteoroid Engineering Model (MEM), which is currently in its second major release version (MEMR2) [Moorhead et al., 2015]. MEM provides the meteoroid flux relative to a user-provided spacecraft trajectory; it provides the total flux as well as the flux per angular bin, speed interval, and on specific surfaces (ram, wake, etc.). Because the sporadic complex dominates the meteoroid flux, MEM is the most appropriate model to use in spacecraft design. Although showers make up a small fraction of the meteoroid environment, they can produce significant short-term enhancements of the meteoroid flux. Thus, it can be valuable to consider showers when assessing risks associated with vehicle operations that are brief in duration. To assist with such assessments, the MEO issues an annual forecast that reports meteor shower fluxes as a function of time and compares showers with the time-averaged total meteoroid flux. This permits missions to do quick assessments of the increase in risk posed by meteor showers.

A transparent look at the measurement and application of colour rendering in the use of LED light sources

NASA Astrophysics Data System (ADS)

Leuschner, F. W.; Van Der Westhuyzen, J. G. J.

2014-06-01

The technology for the measurement of colour rendering and colour quality is not new, but many parameters related to this issue are currently changing. A number of standard methods were developed and are used by different specialty areas of the lighting industry. CIE 13.3 has been the accepted standard implemented by many users and used for many years. Light-emitting Diode (LED) technology moves at a rapid pace and, as this lighting source finds wider acceptance, it appears that traditional colour-rendering measurement methods produce inconsistent results. Practical application of various types of LEDs yielded results that challenged conventional thinking regarding colour measurement of light sources. Recent studies have shown that the anatomy and physiology of the human eye is more complex than formerly accepted. Therefore, the development of updated measurement methodology also forces a fresh look at functioning and colour perception of the human eye, especially with regard to LEDs. This paper includes a short description of the history and need for the measurement of colour rendering. Some of the traditional measurement methods are presented and inadequacies are discussed. The latest discoveries regarding the functioning of the human eye and the perception of colour, especially when LEDs are used as light sources, are discussed. The unique properties of LEDs when used in practical applications such as luminaires are highlighted.

People-Technology-Ecosystem Integration: A Framework to Ensure Regional Interoperability for Safety, Sustainability, and Resilience of Interdependent Energy, Water, and Seafood Sources in the (Persian) Gulf.

PubMed

Meshkati, Najmedin; Tabibzadeh, Maryam; Farshid, Ali; Rahimi, Mansour; Alhanaee, Ghena

2016-02-01

The aim of this study is to identify the interdependencies of human and organizational subsystems of multiple complex, safety-sensitive technological systems and their interoperability in the context of sustainability and resilience of an ecosystem. Recent technological disasters with severe environmental impact are attributed to human factors and safety culture causes. One of the most populous and environmentally sensitive regions in the world, the (Persian) Gulf, is on the confluence of an exponentially growing number of two industries--nuclear power and seawater desalination plants--that is changing its land- and seascape. Building upon Rasmussen's model, a macrosystem integrative framework, based on the broader context of human factors, is developed, which can be considered in this context as a "meta-ergonomics" paradigm, for the analysis of interactions, design of interoperability, and integration of decisions of major actors whose actions can affect safety and sustainability of the focused industries during routine and nonroutine (emergency) operations. Based on the emerging realities in the Gulf region, it is concluded that without such systematic approach toward addressing the interdependencies of water and energy sources, sustainability will be only a short-lived dream and prosperity will be a disappearing mirage for millions of people in the region. This multilayered framework for the integration of people, technology, and ecosystem--which has been applied to the (Persian) Gulf--offers a viable and vital approach to the design and operation of large-scale complex systems wherever the nexus of water, energy, and food sources are concerned, such as the Black Sea. © 2016, Human Factors and Ergonomics Society.

Performance analysis of a full-field and full-range swept-source OCT system

NASA Astrophysics Data System (ADS)

Krauter, J.; Boettcher, T.; Körner, K.; Gronle, M.; Osten, W.; Passilly, N.; Froehly, L.; Perrin, S.; Gorecki, C.

2015-09-01

In recent years, optical coherence tomography (OCT) became gained importance in medical disciplines like ophthalmology, due to its noninvasive optical imaging technique with micrometer resolution and short measurement time. It enables e. g. the measurement and visualization of the depth structure of the retina. In other medical disciplines like dermatology, histopathological analysis is still the gold standard for skin cancer diagnosis. The EU-funded project VIAMOS (Vertically Integrated Array-type Mirau-based OCT System) proposes a new type of OCT system combined with micro-technologies to provide a hand-held, low-cost and miniaturized OCT system. The concept is a combination of full-field and full-range swept-source OCT (SS-OCT) detection in a multi-channel sensor based on a micro-optical Mirau-interferometer array, which is fabricated by means of wafer fabrication. This paper presents the study of an experimental proof-of-concept OCT system as a one-channel sensor with bulk optics. This sensor is a Linnik-interferometer type with similar optical parameters as the Mirau-interferometer array. A commercial wavelength tunable light source with a center wavelength at 845nm and 50nm spectral bandwidth is used with a camera for parallel OCT A-Scan detection. In addition, the reference microscope objective lens of the Linnik-interferometer is mounted on a piezo-actuated phase-shifter. Phase-shifting interferometry (PSI) techniques are applied for resolving the conjugate complex artifact and consequently contribute to an increase of image quality and depth range. A suppression ratio of the complex conjugate term of 36 dB is shown and a system sensitivity greater than 96 dB could be measured.

Rupture Dynamics and Ground Motion from Earthquakes on Rough Faults in Heterogeneous Media

NASA Astrophysics Data System (ADS)

Bydlon, S. A.; Kozdon, J. E.; Duru, K.; Dunham, E. M.

2013-12-01

Heterogeneities in the material properties of Earth's crust scatter propagating seismic waves. The effects of scattered waves are reflected in the seismic coda and depend on the amplitude of the heterogeneities, spatial arrangement, and distance from source to receiver. In the vicinity of the fault, scattered waves influence the rupture process by introducing fluctuations in the stresses driving propagating ruptures. Further variability in the rupture process is introduced by naturally occurring geometric complexity of fault surfaces, and the stress changes that accompany slip on rough surfaces. Our goal is to better understand the origin of complexity in the earthquake source process, and to quantify the relative importance of source complexity and scattering along the propagation path in causing incoherence of high frequency ground motion. Using a 2D high order finite difference rupture dynamics code, we nucleate ruptures on either flat or rough faults that obey strongly rate-weakening friction laws. These faults are embedded in domains with spatially varying material properties characterized by Von Karman autocorrelation functions and their associated power spectral density functions, with variations in wave speed of approximately 5 to 10%. Flat fault simulations demonstrate that off-fault material heterogeneity, at least with this particular form and amplitude, has only a minor influence on the rupture process (i.e., fluctuations in slip and rupture velocity). In contrast, ruptures histories on rough faults in both homogeneous and heterogeneous media include much larger short-wavelength fluctuations in slip and rupture velocity. We therefore conclude that source complexity is dominantly influenced by fault geometric complexity. To examine contributions of scattering versus fault geometry on ground motions, we compute spatially averaged root-mean-square (RMS) acceleration values as a function of fault perpendicular distance for a homogeneous medium and several heterogeneous media characterized by different statistical properties. We find that at distances less than ~6 km from the fault, RMS acceleration values from simulations with homogeneous and heterogeneous media are similar, but at greater distances the RMS values associated with heterogeneous media are larger than those associated with homogeneous media. The magnitude of this divergence increases with the amplitude of the heterogeneities. For instance, for a heterogeneous medium with a 10% standard deviation in material property values relative to mean values, RMS accelerations are ~50% larger than for a homogeneous medium at distances greater than 6 km. This finding is attributed to the scattering of coherent pulses into multiple pulses of decreased amplitude that subsequently arrive at later times. In order to understand the robustness of these results, an extension of our dynamic rupture and wave propagation code to 3D is underway.

The influence of expertise and of physical complexity on visual short-term memory consolidation.

PubMed

Sun, Huiming; Zimmer, Hubert D; Fu, Xiaolan

2011-04-01

We investigated whether the expertise of a perceiver and the physical complexity of a stimulus influence consolidation of visual short-term memory (VSTM) in a S1-S2 (Stimulus 1-Stimulus 2) change detection task. Consolidation is assumed to make transient perceptual representations in VSTM more durable, and it is investigated by postexposure of a mask shortly after offset of the perceived stimulus (S1; 17 to 483 ms). We presented colours, Chinese characters, pseudocharacters, and novel symbols to novices (Germans) or experts of Chinese language (Chinese readers). Physical complexity was manipulated by the number of strokes. Unfamiliar material was remembered worse than familiar material (Experiments 1, 2, and 3). For novices the absolute VSTM performance was better for physically simple than for complex material, whereas for experts the complexity did not matter-Chinese readers memorized Chinese characters (Experiment 3). Articulatory suppression did not change these effects (Experiment 2). We always observed a strong effect of SOA, but this effect was influenced neither by physical complexity nor by expertise; only the length of the interstimulus interval between S1 and the mask was relevant. This was observed even with short stimulus onset asynchrony (SOA) of 100 ms (Experiment 2) and in comparing colours and characters (Experiment 5). However, masks impaired memory if they were presented at the locations of the to-be-memorized items, but not beside them-that is, interference was location-based (Experiment 6). We explain the effect of SOA by the assumption that it takes time to stop encoding of information presented at item locations with the offset of S1. The increasing resistance against interference by irrelevant material appears as consolidation of S1.

Septal Cartilage/Ethmoid Bone Composite Graft: A New and Improved Method for the Correction Underdeveloped Nasal Septum in Patients with Short Noses.

PubMed

Lee, Soo Hyang; Koo, Mun Geun; Kang, Eun Taek

2017-04-01

Septal extension grafts are an effective means of extending nasal length in patients with a short nose. However, such grafts can be challenging in patients who only have small quantities of weak septal cartilage, such as some East Asian patients. We developed a rhinoplasty technique using ethmoid bone to create a cartilage-bone complex to overcome this issue, allowing adequate nasal lengthening. Sixty-four women with short noses and inadequate septal cartilage determined by preoperative computed tomography underwent septal extension grafting with a cartilage-bone complex between January 2009 and December 2014. Septal cartilage and ethmoid bone were harvested during open rhinoplasty and secured to the septal cartilage. Most patients were in their twenties or thirties. All patients underwent septal extension grafting using a cartilage-bone complex and dorsal augmentation with silicone implants. Short nasal length, decreased nasolabial angle and increased nostril show, were rectified. There was no recurrence during a mean follow-up period of 12.3 months, although one patient (1.5%) requested revision surgery. Septal extension grafting with a cartilage-bone complex can be used to correct a short nose, especially in Asians who have relatively small amounts of septal cartilage. The ethmoid bone augments the inadequate septum and provides structural support. This journal requires that authors assign a level of evidence to each article. For a full description of these Evidence-Based Medicine ratings, please refer to the Table of Contents or the online Instructions to Authors www.springer.com/00266 .

Minimalism's Grace.

ERIC Educational Resources Information Center

Mills, Mark

2003-01-01

Notes that central to the short story form are three tools of fiction: voice; point of view; and setting. Discusses examples of short stories by famous authors. Explains that the very short story has become popular with high school and college teachers as a way to pique students' interest in writing fiction and in analyzing complex longer stories…

LPP-EUV light source for HVM lithography

NASA Astrophysics Data System (ADS)

Saito, T.; Ueno, Y.; Yabu, T.; Kurosawa, A.; Nagai, S.; Yanagida, T.; Hori, T.; Kawasuji, Y.; Abe, T.; Kodama, T.; Nakarai, H.; Yamazaki, T.; Mizoguchi, H.

2017-01-01

We have been developing a laser produced plasma extremely ultra violet (LPP-EUV) light source for a high volume manufacturing (HVM) semiconductor lithography. It has several unique technologies such as the high power short pulse carbon dioxide (CO2) laser, the short wavelength solid-state pre-pulse laser and the debris mitigation technology with the magnetic field. This paper presents the key technologies for a high power LPP-EUV light source. We also show the latest performance data which is 188W EUV power at intermediate focus (IF) point with 3.7% conversion efficiency (CE) at 100 kHz.

Post-disaster supply chain interdependent critical infrastructure system restoration: A review of data necessary and available for modeling

USGS Publications Warehouse

Ramachandran, Varun; Long, Suzanna K.; Shoberg, Thomas G.; Corns, Steven; Carlo, Hector J.

2016-01-01

The majority of restoration strategies in the wake of large-scale disasters have focused on short-term emergency response solutions. Few consider medium- to long-term restoration strategies to reconnect urban areas to national supply chain interdependent critical infrastructure systems (SCICI). These SCICI promote the effective flow of goods, services, and information vital to the economic vitality of an urban environment. To re-establish the connectivity that has been broken during a disaster between the different SCICI, relationships between these systems must be identified, formulated, and added to a common framework to form a system-level restoration plan. To accomplish this goal, a considerable collection of SCICI data is necessary. The aim of this paper is to review what data are required for model construction, the accessibility of these data, and their integration with each other. While a review of publically available data reveals a dearth of real-time data to assist modeling long-term recovery following an extreme event, a significant amount of static data does exist and these data can be used to model the complex interdependencies needed. For the sake of illustration, a particular SCICI (transportation) is used to highlight the challenges of determining the interdependencies and creating models capable of describing the complexity of an urban environment with the data publically available. Integration of such data as is derived from public domain sources is readily achieved in a geospatial environment, after all geospatial infrastructure data are the most abundant data source and while significant quantities of data can be acquired through public sources, a significant effort is still required to gather, develop, and integrate these data from multiple sources to build a complete model. Therefore, while continued availability of high quality, public information is essential for modeling efforts in academic as well as government communities, a more streamlined approach to a real-time acquisition and integration of these data is essential.

Supernova and Prompt Gravitational-wave Precursors to LIGO Gravitational-wave Sources and Short GRBs

NASA Astrophysics Data System (ADS)

Michaely, Erez; Perets, Hagai B.

2018-03-01

Binary black holes (BBHs) and binary neutron stars (BNSs) mergers have been recently detected through their gravitational-wave (GW) emission. A post-merger electromagnetic counterpart for the first BNS merger has been detected from seconds up to weeks after the merger. While such post-merger electromagnetic counterparts had been anticipated theoretically, far fewer electromagnetic precursors to GW sources have been proposed, and non have been observed. Here we show that a fraction of a few ×10‑3 (for a standard model) GW sources and short gamma-ray bursts (GRBs) observed by the Laser Interferometer Gravitational-wave Observatory (LIGO) could have been preceded by supernova (SN) explosions from years up to decades before the mergers. The GW sources are produced following the preceding binary evolution, the supernovae involved in the final formation of the GW source progenitors, and the natal kicks that likely accompany them. Together, these determine the orbits of surviving binaries, and hence the delay-time between the birth of the compact binary and its final merger through GW emission. We use data from binary evolution population-synthesis models to show that the delay-time distribution has a non-negligible tail of ultra-short delay-times between 1 and 100 years, thereby giving rise to potentially observable supernovae precursors to GW sources. Moreover, future LISA/DECIGO GW space-detectors will enable the detection of GW inspirals in the pre-merger stage weeks to decades before the final merger. These sources could therefore produce a unique type of promptly appearing LISA/DECIGO GW sources accompanied by coincident supernovae. The archival (and/or direct) detection of precursor (coincident) SNe with GW and/or short GRBs will provide unprecedented characterizations of the merging binaries, and their prior evolution through supernovae and natal kicks, otherwise inaccessible through other means.

The role of short-term memory impairment in nonword repetition, real word repetition, and nonword decoding: A case study.

PubMed

Peter, Beate

2018-01-01

In a companion study, adults with dyslexia and adults with a probable history of childhood apraxia of speech showed evidence of difficulty with processing sequential information during nonword repetition, multisyllabic real word repetition and nonword decoding. Results suggested that some errors arose in visual encoding during nonword reading, all levels of processing but especially short-term memory storage/retrieval during nonword repetition, and motor planning and programming during complex real word repetition. To further investigate the role of short-term memory, a participant with short-term memory impairment (MI) was recruited. MI was confirmed with poor performance during a sentence repetition and three nonword repetition tasks, all of which have a high short-term memory load, whereas typical performance was observed during tests of reading, spelling, and static verbal knowledge, all with low short-term memory loads. Experimental results show error-free performance during multisyllabic real word repetition but high counts of sequence errors, especially migrations and assimilations, during nonword repetition, supporting short-term memory as a locus of sequential processing deficit during nonword repetition. Results are also consistent with the hypothesis that during complex real word repetition, short-term memory is bypassed as the word is recognized and retrieved from long-term memory prior to producing the word.

Long-period spectral features of the Sumatra-Andaman 2004 earthquake rupture process

NASA Astrophysics Data System (ADS)

Clévédé, E.; Bukchin, B.; Favreau, P.; Mostinskiy, A.; Aoudia, A.; Panza, G. F.

2012-12-01

The goal of this study is to investigate the spatial variability of the seismic radiation spectral content of the Sumatra-Andaman 2004 earthquake. We determine the integral estimates of source geometry, duration and rupture propagation given by the stress glut moments of total degree 2 of different source models. These models are constructed from a single or a joint use of different observations including seismology, geodesy, altimetry and tide gauge data. The comparative analysis shows coherency among the different models and no strong contradictions are found between the integral estimates of geodetic and altimetric models, and those retrieved from very long period seismic records (up to 2000-3000 s). The comparison between these results and the integral estimates derived from observed surface wave spectra in period band from 500 to 650 s suggests that the northern part of the fault (to the north of 8°N near Nicobar Islands) did not radiate long period seismic waves, that is, period shorter than 650 s at least. This conclusion is consistent with the existing composite short and long rise time tsunami model: with short rise time of slip in the southern part of the fault and very long rise time of slip at the northern part. This complex space-time slip evolution can be reproduced by a simple dynamic model of the rupture assuming a crude phenomenological mechanical behaviour of the rupture interface at the fault scales combining an effective slip-controlled exponential weakening effect, related to possible friction and damage breakdown processes of the fault zone, and an effective linear viscous strengthening effect, related to possible interface lubrication processes. While the rupture front speed remains unperturbed with initial short slip duration, a slow creep wave propagates behind the rupture front in the case of viscous effects accounting for the long slip duration and the radiation characteristics in the northern segment.

Purpose-driven biomaterials research in liver-tissue engineering.

PubMed

Ananthanarayanan, Abhishek; Narmada, Balakrishnan Chakrapani; Mo, Xuejun; McMillian, Michael; Yu, Hanry

2011-03-01

Bottom-up engineering of microscale tissue ("microtissue") constructs to recapitulate partially the complex structure-function relationships of liver parenchyma has been realized through the development of sophisticated biomaterial scaffolds, liver-cell sources, and in vitro culture techniques. With regard to in vivo applications, the long-lived stem/progenitor cell constructs can improve cell engraftment, whereas the short-lived, but highly functional hepatocyte constructs stimulate host liver regeneration. With regard to in vitro applications, microtissue constructs are being adapted or custom-engineered into cell-based assays for testing acute, chronic and idiosyncratic toxicities of drugs or pathogens. Systems-level methods and computational models that represent quantitative relationships between biomaterial scaffolds, cells and microtissue constructs will further enable their rational design for optimal integration into specific biomedical applications. Copyright © 2010 Elsevier Ltd. All rights reserved.

Time-resolved lidar fluorosensor for sea pollution detection

NASA Technical Reports Server (NTRS)

Ferrario, A.; Pizzolati, P. L.; Zanzottera, E.

1986-01-01

A contemporary time and spectral analysis of oil fluorescence is useful for the detection and the characterization of oil spills on the sea surface. Nevertheless the fluorosensor lidars, which were realized up to now, have only partial capability to perform this double analysis. The main difficulties are the high resolution required (of the order of 1 nanosecond) and the complexity of the detection system for the recording of a two-dimensional matrix of data for each laser pulse. An airborne system whose major specifications were: time range, 30 to 75 ns; time resolution, 1 ns; spectral range, 350 to 700 nm; and spectral resolution, 10 nm was designed and constructed. The designed system of a short pulse ultraviolet laser source and a streak camera based detector are described.

When Instant Gratification Isn't Soon Enough: Getting Attention in a Short-Attention-Span World

NASA Astrophysics Data System (ADS)

Beitler, J.

2005-12-01

People are bombarded with messages - so many messages from so many sources clamoring for attention, that it exceeds the capacity of any human to pay attention to all of them. Technology and media have proliferated, creating more channels and more ways to reach people--and at the same time, audiences who are more skilled at tuning out. How can you reach people without reducing your message to the dreaded sound byte? How can you make sure that your message has complexity and staying power. How can you get people to pay attention at all? The answers may be simpler than you think. The author will present case studies of effective communication approaches and information about applying them to your own situation.

Shared issues of wavefield inversion and illustrations in 3-D diffusive electromagnetics

NASA Astrophysics Data System (ADS)

Lesselier, Dominique; Lambert, Marc; Perrusson, Gaële

2005-07-01

Electromagnetic non-destructive evaluation of complex objects means that one has to decipher data which result from their interaction with imposed sources. This task is crucial in civil, environmental and medical engineering, to quote obvious fields, as well as for safety and reliability of industrial processes of various kinds in key energy and transportation sectors, for example. This short contribution does not attempt to review the huge variety of themes and the many applications of the science of inversion, but aims at emphasizing a number of points that seem common enough to this science to be worthwhile to be reviewed. Two illustrations and a few main references thought of good interest among the ever increasing literature are given. To cite this article: D. Lesselier et al., C. R. Physique 6 (2005).

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bogacz, Slawomir Alex

Here, we summarize current state of concept for muon acceleration aimed at future Neutrino Factory. The main thrust of these studies was to reduce the overall cost while maintaining performance through exploring interplay between complexity of the cooling systems and the acceptance of the accelerator complex. To ensure adequate survival of the short-lived muons, acceleration must occur at high average gradient. The need for large transverse and longitudinal acceptances drives the design of the acceleration system to initially low RF frequency, e.g. 325 MHz, and then increased to 650 MHz, as the transverse size shrinks with increasing energy. High-gradient normalmore » conducting RF cavities at these frequencies require extremely high peak-power RF sources. Hence superconducting RF (SRF) cavities are chosen. Here, we considered two cost effective schemes for accelerating muon beams for a stagable Neutrino Factory: Exploration of the so-called 'dual-use' linac concept, where the same linac structure is used for acceleration of both H- and muons and alternatively, the SRF efficient design based on multi-pass (4.5) 'dogbone' RLA, extendable to multi-pass FFAG-like arcs.« less

Magnitude and Rupture Area Scaling Relationships of Seismicity at The Northwest Geysers EGS Demonstration Project

NASA Astrophysics Data System (ADS)

Dreger, D. S.; Boyd, O. S.; Taira, T.; Gritto, R.

2017-12-01

Enhanced Geothermal System (EGS) resource development requires knowledge of subsurface physical parameters to quantify the evolution of fracture networks. Spatio-temporal source properties, including source dimension, rupture area, slip, rupture speed, and slip velocity of induced seismicity are of interest at The Geysers geothermal field, northern California to map the coseismic facture density of the EGS swarm. In this investigation we extend our previous finite-source analysis of selected M>4 earthquakes to examine source properties of smaller magnitude seismicity located in the Northwest Geysers Enhanced Geothermal System (EGS) demonstration project. Moment rate time histories of the source are found using empirical Green's function (eGf) deconvolution using the method of Mori (1993) as implemented by Dreger et al. (2007). The moment rate functions (MRFs) from data recorded using the Lawrence Berkeley National Laboratory (LBNL) short-period geophone network are inverted for finite-source parameters including the spatial distribution of fault slip, rupture velocity, and the orientation of the causative fault plane. The results show complexity in the MRF for the studied earthquakes. Thus far the estimated rupture area and the magnitude-area trend of the smaller magnitude Geysers seismicity is found to agree with the empirical relationships of Wells and Coppersmith (1994) and Leonard (2010), which were developed for much larger M>5.5 earthquakes worldwide indicating self-similar behavior extending to M2 earthquakes. We will present finite-source inversion results of the micro-earthquakes, attempting to extend the analysis to sub Mw, and demonstrate their magnitude-area scaling. The extension of the scaling laws will then enable the mapping of coseismic fracture density of the EGS swarm in the Northwest Geysers based on catalog moment magnitude estimates.

Memory-induced nonlinear dynamics of excitation in cardiac diseases.

PubMed

Landaw, Julian; Qu, Zhilin

2018-04-01

Excitable cells, such as cardiac myocytes, exhibit short-term memory, i.e., the state of the cell depends on its history of excitation. Memory can originate from slow recovery of membrane ion channels or from accumulation of intracellular ion concentrations, such as calcium ion or sodium ion concentration accumulation. Here we examine the effects of memory on excitation dynamics in cardiac myocytes under two diseased conditions, early repolarization and reduced repolarization reserve, each with memory from two different sources: slow recovery of a potassium ion channel and slow accumulation of the intracellular calcium ion concentration. We first carry out computer simulations of action potential models described by differential equations to demonstrate complex excitation dynamics, such as chaos. We then develop iterated map models that incorporate memory, which accurately capture the complex excitation dynamics and bifurcations of the action potential models. Finally, we carry out theoretical analyses of the iterated map models to reveal the underlying mechanisms of memory-induced nonlinear dynamics. Our study demonstrates that the memory effect can be unmasked or greatly exacerbated under certain diseased conditions, which promotes complex excitation dynamics, such as chaos. The iterated map models reveal that memory converts a monotonic iterated map function into a nonmonotonic one to promote the bifurcations leading to high periodicity and chaos.

Memory-induced nonlinear dynamics of excitation in cardiac diseases

NASA Astrophysics Data System (ADS)

Landaw, Julian; Qu, Zhilin

2018-04-01

Excitable cells, such as cardiac myocytes, exhibit short-term memory, i.e., the state of the cell depends on its history of excitation. Memory can originate from slow recovery of membrane ion channels or from accumulation of intracellular ion concentrations, such as calcium ion or sodium ion concentration accumulation. Here we examine the effects of memory on excitation dynamics in cardiac myocytes under two diseased conditions, early repolarization and reduced repolarization reserve, each with memory from two different sources: slow recovery of a potassium ion channel and slow accumulation of the intracellular calcium ion concentration. We first carry out computer simulations of action potential models described by differential equations to demonstrate complex excitation dynamics, such as chaos. We then develop iterated map models that incorporate memory, which accurately capture the complex excitation dynamics and bifurcations of the action potential models. Finally, we carry out theoretical analyses of the iterated map models to reveal the underlying mechanisms of memory-induced nonlinear dynamics. Our study demonstrates that the memory effect can be unmasked or greatly exacerbated under certain diseased conditions, which promotes complex excitation dynamics, such as chaos. The iterated map models reveal that memory converts a monotonic iterated map function into a nonmonotonic one to promote the bifurcations leading to high periodicity and chaos.

Assessing multiscale complexity of short heart rate variability series through a model-based linear approach

NASA Astrophysics Data System (ADS)

Porta, Alberto; Bari, Vlasta; Ranuzzi, Giovanni; De Maria, Beatrice; Baselli, Giuseppe

2017-09-01

We propose a multiscale complexity (MSC) method assessing irregularity in assigned frequency bands and being appropriate for analyzing the short time series. It is grounded on the identification of the coefficients of an autoregressive model, on the computation of the mean position of the poles generating the components of the power spectral density in an assigned frequency band, and on the assessment of its distance from the unit circle in the complex plane. The MSC method was tested on simulations and applied to the short heart period (HP) variability series recorded during graded head-up tilt in 17 subjects (age from 21 to 54 years, median = 28 years, 7 females) and during paced breathing protocols in 19 subjects (age from 27 to 35 years, median = 31 years, 11 females) to assess the contribution of time scales typical of the cardiac autonomic control, namely in low frequency (LF, from 0.04 to 0.15 Hz) and high frequency (HF, from 0.15 to 0.5 Hz) bands to the complexity of the cardiac regulation. The proposed MSC technique was compared to a traditional model-free multiscale method grounded on information theory, i.e., multiscale entropy (MSE). The approach suggests that the reduction of HP variability complexity observed during graded head-up tilt is due to a regularization of the HP fluctuations in LF band via a possible intervention of sympathetic control and the decrement of HP variability complexity observed during slow breathing is the result of the regularization of the HP variations in both LF and HF bands, thus implying the action of physiological mechanisms working at time scales even different from that of respiration. MSE did not distinguish experimental conditions at time scales larger than 1. Over a short time series MSC allows a more insightful association between cardiac control complexity and physiological mechanisms modulating cardiac rhythm compared to a more traditional tool such as MSE.

Overlooked Short Toxin-Like Proteins: A Shortcut to Drug Design

PubMed Central

Linial, Michal

2017-01-01

Short stable peptides have huge potential for novel therapies and biosimilars. Cysteine-rich short proteins are characterized by multiple disulfide bridges in a compact structure. Many of these metazoan proteins are processed, folded, and secreted as soluble stable folds. These properties are shared by both marine and terrestrial animal toxins. These stable short proteins are promising sources for new drug development. We developed ClanTox (classifier of animal toxins) to identify toxin-like proteins (TOLIPs) using machine learning models trained on a large-scale proteomic database. Insects proteomes provide a rich source for protein innovations. Therefore, we seek overlooked toxin-like proteins from insects (coined iTOLIPs). Out of 4180 short (<75 amino acids) secreted proteins, 379 were predicted as iTOLIPs with high confidence, with as many as 30% of the genes marked as uncharacterized. Based on bioinformatics, structure modeling, and data-mining methods, we found that the most significant group of predicted iTOLIPs carry antimicrobial activity. Among the top predicted sequences were 120 termicin genes from termites with antifungal properties. Structural variations of insect antimicrobial peptides illustrate the similarity to a short version of the defensin fold with antifungal specificity. We also identified 9 proteins that strongly resemble ion channel inhibitors from scorpion and conus toxins. Furthermore, we assigned functional fold to numerous uncharacterized iTOLIPs. We conclude that a systematic approach for finding iTOLIPs provides a rich source of peptides for drug design and innovative therapeutic discoveries. PMID:29109389

Focusing on Short-Term Achievement Gains Fails to Produce Long-Term Gains

ERIC Educational Resources Information Center

Grissmer, David W.; Ober, David R.; Beekman, John A.

2014-01-01

The short-term emphasis engendered by No Child Left Behind (NCLB) has focused research predominantly on unraveling the complexities and uncertainties in assessing short-term results, rather than developing methods and assessing results over the longer term. In this paper we focus on estimating long-term gains and address questions important to…

Difference in precedence effect between children and adults signifies development of sound localization abilities in complex listening tasks

PubMed Central

Litovsky, Ruth Y.; Godar, Shelly P.

2010-01-01

The precedence effect refers to the fact that humans are able to localize sound in reverberant environments, because the auditory system assigns greater weight to the direct sound (lead) than the later-arriving sound (lag). In this study, absolute sound localization was studied for single source stimuli and for dual source lead-lag stimuli in 4–5 year old children and adults. Lead-lag delays ranged from 5–100 ms. Testing was conducted in free field, with pink noise bursts emitted from loudspeakers positioned on a horizontal arc in the frontal field. Listeners indicated how many sounds were heard and the perceived location of the first- and second-heard sounds. Results suggest that at short delays (up to 10 ms), the lead dominates sound localization strongly at both ages, and localization errors are similar to those with single-source stimuli. At longer delays errors can be large, stemming from over-integration of the lead and lag, interchanging of perceived locations of the first-heard and second-heard sounds due to temporal order confusion, and dominance of the lead over the lag. The errors are greater for children than adults. Results are discussed in the context of maturation of auditory and non-auditory factors. PMID:20968369

Wafer bonding process for building MEMS devices

NASA Astrophysics Data System (ADS)

Pabo, Eric F.; Meiler, Josef; Matthias, Thorsten

2014-06-01

The technology for the measurement of colour rendering and colour quality is not new, but many parameters related to this issue are currently changing. A number of standard methods were developed and are used by different specialty areas of the lighting industry. CIE 13.3 has been the accepted standard implemented by many users and used for many years. Light-emitting Diode (LED) technology moves at a rapid pace and, as this lighting source finds wider acceptance, it appears that traditional colour-rendering measurement methods produce inconsistent results. Practical application of various types of LEDs yielded results that challenged conventional thinking regarding colour measurement of light sources. Recent studies have shown that the anatomy and physiology of the human eye is more complex than formerly accepted. Therefore, the development of updated measurement methodology also forces a fresh look at functioning and colour perception of the human eye, especially with regard to LEDs. This paper includes a short description of the history and need for the measurement of colour rendering. Some of the traditional measurement methods are presented and inadequacies are discussed. The latest discoveries regarding the functioning of the human eye and the perception of colour, especially when LEDs are used as light sources, are discussed. The unique properties of LEDs when used in practical applications such as luminaires are highlighted.

Short- and longtime stability of therapeutic ultrasound reference sources for dosimetry and exposimetry purposes

NASA Astrophysics Data System (ADS)

Haller, J.; Wilkens, V.

2017-03-01

The objective of this work was to create highly stable therapeutic ultrasound fields with well-known exposimetry and dosimetry parameters that are reproducible and hence predictable with well-known uncertainties. Such well- known and reproducible fields would allow validation and secondary calibrations of different measuring capabilities, which is already a widely accepted strategy for diagnostic fields. For this purpose, a reference setup was established that comprises two therapeutic ultrasound sources (one High-Intensity Therapeutic Ultrasound (HITU) source and one physiotherapy-like source), standard rf electronics for signal creation, and computer-controlled feedback to stabilize the input voltage. The short- and longtime stability of the acoustic output were evaluated - for the former, measurements over typical laboratory measurement time periods (i.e. some seconds or minutes) of the input voltage stability with and without feedback control were performed. For the latter, measurements of typical acoustical exposimetry parameters were performed bimonthly over one year. The measurement results show that the short- and the longtime stability of the reference setup are very good and that it is especially significantly improved in comparison to a setup without any feedback control.

Effect of interior door position on room-to-room differences in residential pollutant concentrations after short-term releases

NASA Astrophysics Data System (ADS)

Ferro, Andrea R.; Klepeis, Neil E.; Ott, Wayne R.; Nazaroff, William W.; Hildemann, Lynn M.; Switzer, Paul

Residential interior door positions influence the pollutant concentrations that result from short-term indoor sources, such as cigarettes, candles, and incense. To elucidate this influence, we reviewed past studies and conducted new experiments in three residences: a single-story 714 m 3 ranch-style house, a 510 m 3 two-story split-level house, and a 200 m 3 two-story house. During the experiments, we released sulfur hexafluoride or carbon monoxide tracer gas over short periods (≤30 min) and measured concentrations in the source room and at least one other (receptor) room for various interior door opening positions. We found that closing a door between rooms effectively prevented transport of air pollutants, reducing the average concentration in the receptor room relative to the source room by 57-100% over exposure periods of 1-8 h. When intervening doors were partially or fully open, the reduction in average concentrations ranged from 3% to 99%, varying as a function of door opening width and the distance between source and receptor rooms.

Peclet number as affected by molecular diffusion controls transient anomalous transport in alluvial aquifer-aquitard complexes

USGS Publications Warehouse

Zhang, Yong; Green, Christopher T.; Tick, Geoffrey R.

2015-01-01

This study evaluates the role of the Peclet number as affected by molecular diffusion in transient anomalous transport, which is one of the major knowledge gaps in anomalous transport, by combining Monte Carlo simulations and stochastic model analysis. Two alluvial settings containing either short- or long-connected hydrofacies are generated and used as media for flow and transport modeling. Numerical experiments show that 1) the Peclet number affects both the duration of the power-law segment of tracer breakthrough curves (BTCs) and the transition rate from anomalous to Fickian transport by determining the solute residence time for a given low-permeability layer, 2) mechanical dispersion has a limited contribution to the anomalous characteristics of late-time transport as compared to molecular diffusion due to an almost negligible velocity in floodplain deposits, and 3) the initial source dimensions only enhance the power-law tail of the BTCs at short travel distances. A tempered stable stochastic (TSS) model is then applied to analyze the modeled transport. Applications show that the time-nonlocal parameters in the TSS model relate to the Peclet number, Pe. In particular, the truncation parameter in the TSS model increases nonlinearly with a decrease in Pe due to the decrease of the mean residence time, and the capacity coefficient increases with an increase in molecular diffusion which is probably due to the increase in the number of immobile particles. The above numerical experiments and stochastic analysis therefore reveal that the Peclet number as affected by molecular diffusion controls transient anomalous transport in alluvial aquifer–aquitard complexes.

Impact of Multiple Complex Plaques on Short-and Long-Term Clinical in Patients Presenting with ST-Segment Elevation Myocardial Infarction (From the Harmonizing Outcomes with Revascularization and Stents in Acute Myocardial Infarction [HORIZONS-AMI] Trial)

PubMed Central

Keeley, Ellen C.; Mehran, Roxana; Brener, Sorin J.; Witzenbichler, Bernhard; Guagliumi, Giulio; Dudek, Dariusz; Kornowski, Ran; Dressler, Ovidiu; Fahy, Martin; Xu, Ke; Grines, Cindy L.; Stone, Gregg W.

2014-01-01

It is not known whether the extent and severity of non-culprit coronary lesions correlate with outcomes in patients with STEMI referred for primary PCI. We sought to quantify complex plaques in ST-segment elevation myocardial infarction (STEMI) patients referred for primary percutaneous coronary intervention (PCI) and to determine their effect on short- and long-term clinical outcomes by examining the core laboratory database for plaque analysis from the HORIZONS-AMI study. Baseline demographic, angiographic, and procedural details were compared between patients with single vs. multiple complex plaques undergoing single vessel PCI. Multivariable analysis was performed for predictors of long-term major adverse cardiac events (MACE), a combined end point of death, reinfarction, ischemic target vessel revascularization, or stroke, and for death alone. Single vessel PCI was performed in 3,137 patients (87%): 2,174 (69%) had multiple complex plaques and 963 (31%) had a single complex plaque. Compared to those with a single complex plaque, patients with multiple complex plaques were older (p<0.0001) and had more comorbidities. The presence of multiple complex plaques was an independent predictor of 3-year MACE (hazard ratio [HR]: 1.58; 95% confidence interval [CI]: 1.26–1.98, p<0.0001), and death alone (HR: 1.68; 95% CI: 1.05–2.70, p=0.03). In conclusion, multiple complex plaques are present in the majority of STEMI patients undergoing primary PCI and their presence is an independent predictor of short- and long-term MACE, including death. (Harmonizing Outcomes With Revascularization and Stents in Acute Myocardial Infarction [HORIZONS-AMI]; NCT00433966) PMID:24703369

[The effect of a short-term group stabilisation training in patients with complex posttraumatic stress disorder].

PubMed

Beldman, G; Kessels, H H L M; de Groot, I W

The international guideline for complex posttraumatic stress disorder (ptsd) from the International Society for Traumatic Stress Studies (istss) recommends treatment in phases, starting with stabilisation treatment. Different forms of stabilisation training have been developed the past few years, one being short-term group stabilisation training.
AIM: To map out the effects of the short-term group training.
METHOD: The research implemented a pre-post design. The training consisted of five group sessions. Questionnaires (bsi, OQ 45 and svl-15) were completed both prior to and after the training. Four domains were assessed: psychosymptomatology in general, depressive symptoms, problems with interpersonal functioning and ptsd-related symptoms. The effect of the training was calculated by paired t-tests.
RESULTS: The questionnaires of the 47 participants who had completed the training were analysed. No significant decrease was observed during the stabilisation training concerning the symptoms of the four evaluated domains.
CONCLUSION: Contrary our expectations, a short-term group-based stabilisation training does not seem to have added value when treating patients with complex ptsd. The results correspond with a recent trend in which the effectiveness of other stabilising methods is questioned. Alternative treatment options are discussed.

INSTRUMENTS AND METHODS OF INVESTIGATION: Giant pulses of thermal neutrons in large accelerator beam dumps. Possibilities for experiments

NASA Astrophysics Data System (ADS)

Stavissky, Yurii Ya

2006-12-01

A short review is presented of the development in Russia of intense pulsed neutron sources for physical research — the pulsating fast reactors IBR-1, IBR-30, IBR-2 (Joint Institute for Nuclear Research, Dubna), and the neutron-radiation complex of the Moscow meson factory — the 'Troitsk Trinity' (RAS Institute for Nuclear Research, Troitsk, Moscow region). The possibility of generating giant neutron pulses in beam dumps of superhigh energy accelerators is discussed. In particular, the possibility of producing giant pulsed thermal neutron fluxes in modified beam dumps of the large hadron collider (LHD) under construction at CERN is considered. It is shown that in the case of one-turn extraction ov 7-TeV protons accumulated in the LHC main rings on heavy targets with water or zirconium-hydride moderators placed in the front part of the LHC graphite beam-dump blocks, every 10 hours relatively short (from ~100 µs) thermal neutron pulses with a peak flux density of up to ~1020 neutrons cm-2 s-1 may be produced. The possibility of applying such neutron pulses in physical research is discussed.

Auditory attention strategy depends on target linguistic properties and spatial configurationa)

PubMed Central

McCloy, Daniel R.; Lee, Adrian K. C.

2015-01-01

Whether crossing a busy intersection or attending a large dinner party, listeners sometimes need to attend to multiple spatially distributed sound sources or streams concurrently. How they achieve this is not clear—some studies suggest that listeners cannot truly simultaneously attend to separate streams, but instead combine attention switching with short-term memory to achieve something resembling divided attention. This paper presents two oddball detection experiments designed to investigate whether directing attention to phonetic versus semantic properties of the attended speech impacts listeners' ability to divide their auditory attention across spatial locations. Each experiment uses four spatially distinct streams of monosyllabic words, variation in cue type (providing phonetic or semantic information), and requiring attention to one or two locations. A rapid button-press response paradigm is employed to minimize the role of short-term memory in performing the task. Results show that differences in the spatial configuration of attended and unattended streams interact with linguistic properties of the speech streams to impact performance. Additionally, listeners may leverage phonetic information to make oddball detection judgments even when oddballs are semantically defined. Both of these effects appear to be mediated by the overall complexity of the acoustic scene. PMID:26233011

Spatial and vertical distribution of short chain chlorinated paraffins in soils from wastewater irrigated farmlands.

PubMed

Zeng, Lixi; Wang, Thanh; Han, Wenya; Yuan, Bo; Liu, Qian; Wang, Yawei; Jiang, Guibin

2011-03-15

Chlorinated paraffins (CPs) are one of the most complex groups of halogenated contaminants in the environment. However, studies of short chain CPs (SCCPs) in China are very scarce. In this study, the concentrations and distribution of SCCPs in farm soils from a wastewater irrigated area in China were investigated. SCCPs were detected in all topsoil samples, with the sum of the concentrations (ΣSCCPs) in the range of 159.9-1450 ng/g (dry weight, dw). A noticeable spatial trend and specific congener distribution were observed in the wastewater irrigated farmland. Soil vertical profiles showed that ΣSCCP concentrations below the plowed layer decreased exponentially and had a significant positive relationship (R(2) > 0.83) with total organic carbon in soil cores. Furthermore, soil vertical distributions indicated that lower chlorinated (Cl(5-6)) and shorter chain (C(10-12)) congeners are more prone to migrate to deeper soil layers compared to highly chlorinated and longer chain congeners. This work demonstrated that effluents from sewage treatment plants (STPs) could be a significant source of SCCPs to the ambient environment and wastewater irrigation can lead to higher accumulation of SCCPs in farm soils.

A Simulation Framework for Battery Cell Impact Safety Modeling Using LS-DYNA

DOE PAGES

Marcicki, James; Zhu, Min; Bartlett, Alexander; ...

2017-02-04

The development process of electrified vehicles can benefit significantly from computer-aided engineering tools that predict themultiphysics response of batteries during abusive events. A coupled structural, electrical, electrochemical, and thermal model framework has been developed within the commercially available LS-DYNA software. The finite element model leverages a three-dimensional mesh structure that fully resolves the unit cell components. The mechanical solver predicts the distributed stress and strain response with failure thresholds leading to the onset of an internal short circuit. In this implementation, an arbitrary compressive strain criterion is applied locally to each unit cell. A spatially distributed equivalent circuit model providesmore » an empirical representation of the electrochemical responsewith minimal computational complexity.The thermalmodel provides state information to index the electrical model parameters, while simultaneously accepting irreversible and reversible sources of heat generation. The spatially distributed models of the electrical and thermal dynamics allow for the localization of current density and corresponding temperature response. The ability to predict the distributed thermal response of the cell as its stored energy is completely discharged through the short circuit enables an engineering safety assessment. A parametric analysis of an exemplary model is used to demonstrate the simulation capabilities.« less

Time-Scale Modification of Complex Acoustic Signals in Noise

DTIC Science & Technology

1994-02-04

of a response from a closing stapler . 15 6 Short-time processing of long waveforms. 16 7 Time-scale expansion (x 2) of sequence of transients using...filter bank/overlap- add. 17 8 Time-scale expansion (x2) of a closing stapler using filter bank/overlap-add. 18 9 Composite subband time-scale...INTRODUCTION Short-duration complex sounds, as from the closing of a stapler or the tapping of a drum stick, often consist of a series of brief

Complexity Matching Effects in Bimanual and Interpersonal Syncopated Finger Tapping

PubMed Central

Coey, Charles A.; Washburn, Auriel; Hassebrock, Justin; Richardson, Michael J.

2016-01-01

The current study was designed to investigate complexity matching during syncopated behavioral coordination. Participants either tapped in (bimanual) syncopation using their two hands, or tapped in (interpersonal) syncopation with a partner, with each participant using one of their hands. The time series of inter-tap intervals (ITI) from each hand were submitted to fractal analysis, as well as to short-term and multi-timescale cross-correlation analyses. The results demonstrated that the fractal scaling of one hand’s ITI was strongly correlated to that of the other hand, and this complexity matching effect was stronger in the bimanual condition than in the interpersonal condition. Moreover, the degree of complexity matching was predicted by the strength of short-term cross-correlation and the stability of the asynchrony between the two tapping series. These results suggest that complexity matching is not specific to the inphase synchronization tasks used in past research, but is a general result of coordination between complex systems. PMID:26840612

Large-N Nodal Seismic Deployment at Mount St Helens

NASA Astrophysics Data System (ADS)

Hansen, S. M.; Schmandt, B.; Vidale, J. E.; Creager, K. C.; Levander, A.; Kiser, E.; Barklage, M.; Hollis, D.

2014-12-01

In late July of 2014 over 900 autonomous short period seismometers were deployed within 12 km of the summit crater at Mount St Helens. In concert with the larger iMUSH experiment, these data constitute the largest seismic interrogation of an active volcano ever conducted. The array was deployed along the road and trail system of the national volcanic monument and adjacent regions with an average station spacing of 250 meters and included several station clusters with increased sampling density. The 10 Hz phones recorded the vertical component wavefield continuously at 250 Hz sampling rate over a period of approximately two weeks. During the recording time, the Pacific Northwest Seismic Network detected ~65 earthquakes within the array footprint ranging in magnitude from -0.9 to 1.1, the majority of which were located beneath the crater at less than 10 km depth. In addition to the natural seismicity, 23 explosion sources from the iMUSH active source experiment were recorded, several of which exceeded magnitude 2. Preliminary results for this project will include an expanded event catalog as the array should significantly reduce the detection threshold. The sheer number of instruments allows for stacking of station clusters producing high signal-to-noise beam traces which can be used for event triggering and for creating waveform templates to measure relative travel-times across the array via cross-correlation. The ability of the array to estimate focal mechanisms from event radiation patterns and delineate complex path effects will also be investigated. The density and azimuthal coverage provide by this array offers an excellent opportunity to investigate short-wavelength variations of the seismic wavefield in a complex geologic environment. Previous seismic tomography results suggest the presence of a shallow magma chamber at 1-3 km depth near the region of shallow seismicity as evidenced by a P wave low-velocity anomaly of at least -5.5% [Waite and Moran, 2009]. The proximity of the array as well as the event distribution make it possible to investigate wavefield distortion and scattering due to the potential magma chamber, including s-wave blockage as has been observed in other systems.

Characterization of a high repetition-rate laser-driven short-pulsed neutron source

NASA Astrophysics Data System (ADS)

Hah, J.; Nees, J. A.; Hammig, M. D.; Krushelnick, K.; Thomas, A. G. R.

2018-05-01

We demonstrate a repetitive, high flux, short-pulsed laser-driven neutron source using a heavy-water jet target. We measure neutron generation at 1/2 kHz repetition rate using several-mJ pulse energies, yielding a time-averaged neutron flux of 2 × 105 neutrons s‑1 (into 4π steradians). Deuteron spectra are also measured in order to understand source characteristics. Analyses of time-of-flight neutron spectra indicate that two separate populations of neutrons, ‘prompt’ and ‘delayed’, are generated at different locations. Gamma-ray emission from neutron capture 1H(n,γ) is also measured to confirm the neutron flux.

Enhanced adaptive signal control using dedicated short-range communications.

DOT National Transportation Integrated Search

2014-05-01

Connected vehicle technology with dedicated short-range communications can provide traffic : information in a spatial domain that conventional fixed-point detectors cannot provide. However, because : of low market penetration with this new data sourc...

Carbon isotopes of dissolved inorganic carbon reflect utilization of different carbon sources by microbial communities in two limestone aquifer assemblages

NASA Astrophysics Data System (ADS)

Nowak, Martin E.; Schwab, Valérie F.; Lazar, Cassandre S.; Behrendt, Thomas; Kohlhepp, Bernd; Totsche, Kai Uwe; Küsel, Kirsten; Trumbore, Susan E.

2017-08-01

Isotopes of dissolved inorganic carbon (DIC) are used to indicate both transit times and biogeochemical evolution of groundwaters. These signals can be complicated in carbonate aquifers, as both abiotic (i.e., carbonate equilibria) and biotic factors influence the δ13C and 14C of DIC. We applied a novel graphical method for tracking changes in the δ13C and 14C of DIC in two distinct aquifer complexes identified in the Hainich Critical Zone Exploratory (CZE), a platform to study how water transport links surface and shallow groundwaters in limestone and marlstone rocks in central Germany. For more quantitative estimates of contributions of different biotic and abiotic carbon sources to the DIC pool, we used the NETPATH geochemical modeling program, which accounts for changes in dissolved ions in addition to C isotopes. Although water residence times in the Hainich CZE aquifers based on hydrogeology are relatively short (years or less), DIC isotopes in the shallow, mostly anoxic, aquifer assemblage (HTU) were depleted in 14C compared to a deeper, oxic, aquifer complex (HTL). Carbon isotopes and chemical changes in the deeper HTL wells could be explained by interaction of recharge waters equilibrated with post-bomb 14C sources with carbonates. However, oxygen depletion and δ13C and 14C values of DIC below those expected from the processes of carbonate equilibrium alone indicate considerably different biogeochemical evolution of waters in the upper aquifer assemblage (HTU wells). Changes in 14C and 13C in the upper aquifer complexes result from a number of biotic and abiotic processes, including oxidation of 14C-depleted OM derived from recycled microbial carbon and sedimentary organic matter as well as water-rock interactions. The microbial pathways inferred from DIC isotope shifts and changes in water chemistry in the HTU wells were supported by comparison with in situ microbial community structure based on 16S rRNA analyses. Our findings demonstrate the large variation in the importance of biotic as well as abiotic controls on 13C and 14C of DIC in closely related aquifer assemblages. Further, they support the importance of subsurface-derived carbon sources like DIC for chemolithoautotrophic microorganisms as well as rock-derived organic matter for supporting heterotrophic groundwater microbial communities and indicate that even shallow aquifers have microbial communities that use a variety of subsurface-derived carbon sources.

Locating the source of diffusion in complex networks by time-reversal backward spreading.

PubMed

Shen, Zhesi; Cao, Shinan; Wang, Wen-Xu; Di, Zengru; Stanley, H Eugene

2016-03-01

Locating the source that triggers a dynamical process is a fundamental but challenging problem in complex networks, ranging from epidemic spreading in society and on the Internet to cancer metastasis in the human body. An accurate localization of the source is inherently limited by our ability to simultaneously access the information of all nodes in a large-scale complex network. This thus raises two critical questions: how do we locate the source from incomplete information and can we achieve full localization of sources at any possible location from a given set of observable nodes. Here we develop a time-reversal backward spreading algorithm to locate the source of a diffusion-like process efficiently and propose a general locatability condition. We test the algorithm by employing epidemic spreading and consensus dynamics as typical dynamical processes and apply it to the H1N1 pandemic in China. We find that the sources can be precisely located in arbitrary networks insofar as the locatability condition is assured. Our tools greatly improve our ability to locate the source of diffusion in complex networks based on limited accessibility of nodal information. Moreover, they have implications for controlling a variety of dynamical processes taking place on complex networks, such as inhibiting epidemics, slowing the spread of rumors, pollution control, and environmental protection.

Locating the source of diffusion in complex networks by time-reversal backward spreading

NASA Astrophysics Data System (ADS)

Shen, Zhesi; Cao, Shinan; Wang, Wen-Xu; Di, Zengru; Stanley, H. Eugene

2016-03-01

Locating the source that triggers a dynamical process is a fundamental but challenging problem in complex networks, ranging from epidemic spreading in society and on the Internet to cancer metastasis in the human body. An accurate localization of the source is inherently limited by our ability to simultaneously access the information of all nodes in a large-scale complex network. This thus raises two critical questions: how do we locate the source from incomplete information and can we achieve full localization of sources at any possible location from a given set of observable nodes. Here we develop a time-reversal backward spreading algorithm to locate the source of a diffusion-like process efficiently and propose a general locatability condition. We test the algorithm by employing epidemic spreading and consensus dynamics as typical dynamical processes and apply it to the H1N1 pandemic in China. We find that the sources can be precisely located in arbitrary networks insofar as the locatability condition is assured. Our tools greatly improve our ability to locate the source of diffusion in complex networks based on limited accessibility of nodal information. Moreover, they have implications for controlling a variety of dynamical processes taking place on complex networks, such as inhibiting epidemics, slowing the spread of rumors, pollution control, and environmental protection.

Liquid crystalline phase behavior of protein fibers in water: experiments versus theory.

PubMed

Jung, Jin-Mi; Mezzenga, Raffaele

2010-01-05

We have developed a new method allowing the study of the thermodynamic phase behavior of mesoscopic colloidal systems consisting of amyloid protein fibers in water, obtained by heat denaturation and aggregation of beta-lactoglobulin, a dairy protein. The fibers have a cross section of about 5.2 nm and two groups of polydisperse contour lengths: (i) long fibers of 1-20 microm, showing semiflexible behavior, and (ii) short rods of 100-200 nm long, obtained by cutting the long fibers via high-pressure homogenization. At pH 2 without salt, these fibers are highly charged and stable in water. We have studied the isotropic-nematic phase transition for both systems and compared our results with the theoretical values predicted by Onsager's theory. The experimentally measured isotropic-nematic phase transition was found to occur at 0.4% and at 3% for the long and short fibers, respectively. For both systems, this phase transition occurs at concentrations more than 1 order of magnitude lower than what is expected based on Onsager's theory. Moreover, at low enough pH, no intermediate biphasic region was observed between the isotropic phase and the nematic phase. The phase diagrams of both systems (pH vs concentration) showed similar, yet complex and rich, phase behavior. We discuss the possible physical fundamentals ruling the phase diagram as well as the discrepancy we observe for the isotropic-nematic phase transition between our experimental results and the predicted theoretical results. Our work highlights that systems formed by water-amyloid protein fibers are way too complex to be understood based solely on Onsager's theories. Experimental results are revisited in terms of the Flory's theory (1956) for suspensions of rods, which allows accounting for rod-solvent hydrophobic interactions. This theoretical approach allows explaining, on a semiquantitative basis, most of the discrepancies observed between the experimental results and Onsager's predictions. The sources of protein fibers complex colloidal behavior are analyzed and discussed at length.

Model-based quality assessment and base-calling for second-generation sequencing data.

PubMed

Bravo, Héctor Corrada; Irizarry, Rafael A

2010-09-01

Second-generation sequencing (sec-gen) technology can sequence millions of short fragments of DNA in parallel, making it capable of assembling complex genomes for a small fraction of the price and time of previous technologies. In fact, a recently formed international consortium, the 1000 Genomes Project, plans to fully sequence the genomes of approximately 1200 people. The prospect of comparative analysis at the sequence level of a large number of samples across multiple populations may be achieved within the next five years. These data present unprecedented challenges in statistical analysis. For instance, analysis operates on millions of short nucleotide sequences, or reads-strings of A,C,G, or T's, between 30 and 100 characters long-which are the result of complex processing of noisy continuous fluorescence intensity measurements known as base-calling. The complexity of the base-calling discretization process results in reads of widely varying quality within and across sequence samples. This variation in processing quality results in infrequent but systematic errors that we have found to mislead downstream analysis of the discretized sequence read data. For instance, a central goal of the 1000 Genomes Project is to quantify across-sample variation at the single nucleotide level. At this resolution, small error rates in sequencing prove significant, especially for rare variants. Sec-gen sequencing is a relatively new technology for which potential biases and sources of obscuring variation are not yet fully understood. Therefore, modeling and quantifying the uncertainty inherent in the generation of sequence reads is of utmost importance. In this article, we present a simple model to capture uncertainty arising in the base-calling procedure of the Illumina/Solexa GA platform. Model parameters have a straightforward interpretation in terms of the chemistry of base-calling allowing for informative and easily interpretable metrics that capture the variability in sequencing quality. Our model provides these informative estimates readily usable in quality assessment tools while significantly improving base-calling performance. © 2009, The International Biometric Society.

The School Short-Form Coopersmith Self-Esteem Inventory: Revised and Improved

ERIC Educational Resources Information Center

Hills, Peter R.; Francis, Leslie J.; Jennings, Penelope

2011-01-01

The school short form of the Coopersmith Self-Esteem Inventory is a widely used measure of children's global self-esteem. Unlike the full-length scale, however, it has been generally understood that the short form does not allow differentiation between the major individual sources of self-esteem. The present study has examined the internal…

Variations in recollection: the effects of complexity on source recognition.

PubMed

Parks, Colleen M; Murray, Linda J; Elfman, Kane; Yonelinas, Andrew P

2011-07-01

Whether recollection is a threshold or signal detection process is highly controversial, and the controversy has centered in part on the shape of receiver operating characteristics (ROCs) and z-transformed ROCs (zROCs). U-shaped zROCs observed in tests thought to rely heavily on recollection, such as source memory tests, have provided evidence in favor of the threshold assumption, but zROCs are not always as U-shaped as threshold theory predicts. Source zROCs have been shown to become more linear when the contribution of familiarity to source discriminations is increased, and this may account for the existing results. However, another way in which source zROCs may become more linear is if the recollection threshold begins to break down and recollection becomes more graded and Gaussian. We tested the "graded recollection" account in the current study. We found that increasing stimulus complexity (i.e., changing from single words to sentences) or increasing source complexity (i.e., changing the sources from audio to videos of speakers) resulted in flatter source zROCs. In addition, conditions expected to reduce recollection (i.e., divided attention and amnesia) had comparable effects on source memory in simple and complex conditions, suggesting that differences between simple and complex conditions were due to differences in the nature of recollection, rather than differences in the utility of familiarity. The results suggest that under conditions of high complexity, recollection can appear more graded, and it can produce curved ROCs. The results have implications for measurement models and for current theories of recognition memory.

Switches from pi- to sigma-bonding complexes controlled by gate voltages.

PubMed

Matsui, Eriko; Harnack, Oliver; Matsuzawa, Nobuyuki N; Yasuda, Akio

2005-10-01

A conjugated polymer/metal ion/liquid-crystal molecular system was set between source and drain electrodes with a 100 nm gap. When gate voltage (Vg) increases, the current between source and drain electrodes increases. Infrared spectra show this system to be composed of pi and sigma complexes. At Vg = 0, the pi complex dominates the sigma complex, whereas the sigma complex becomes dominant when Vg is switched on. Calculations found that the pi complex has lower conductivity than the sigma complex.

Two-micron Laser Atmospheric Wind Sounder (LAWS) pointing/tracking study

NASA Technical Reports Server (NTRS)

Manlief, Scott

1995-01-01

The objective of the study was to identify and model major sources of short-term pointing jitter for a free-flying, full performance 2 micron LAWS system and evaluate the impact of the short-term jitter on wind-measurement performance. A fast steering mirror controls system was designed for the short-term jitter compensation. The performance analysis showed that the short-term jitter performance of the controls system over the 5.2 msec round-trip time for a realistic spacecraft environment was = 0.3 micro rad, rms, within the specified value of less than 0.5 micro rad, rms, derived in a 2 micron LAWS System Study. Disturbance modes were defined for: (1) the Bearing and Power Transfer Assembly (BAPTA) scan bearing, (2) the spacecraft reaction wheel torques, and (3) the solar array drive torques. The scan bearing disturbance was found to be the greatest contributing noise source to the jitter performance. Disturbances from the fast steering mirror reaction torques and a boom-mounted cross-link antenna clocking were also considered but were judged to be small compared to the three principal disturbance sources above and were not included in the final controls analysis.

Method and source for producing a high concentration of positively charged molecular hydrogen or deuterium ions

DOEpatents

Ehlers, Kenneth W.; Leung, Ka-Ngo

1988-01-01

A high concentration of positive molecular ions of hydrogen or deuterium gas is extracted from a positive ion source having a short path length of extracted ions, relative to the mean free path of the gas molecules, to minimize the production of other ion species by collision between the positive ions and gas molecules. The ion source has arrays of permanent magnets to produce a multi-cusp magnetic field in regions remote from the plasma grid and the electron emitters, for largely confining the plasma to the space therebetween. The ion source has a chamber which is short in length, relative to its transverse dimensions, and the electron emitters are at an even shorter distance from the plasma grid, which contains one or more extraction apertures.

A functional magnetic resonance imaging investigation of short-term source and item memory for negative pictures.

PubMed

Mitchell, Karen J; Mather, Mara; Johnson, Marcia K; Raye, Carol L; Greene, Erich J

2006-10-02

We investigated the hypothesis that arousal recruits attention to item information, thereby disrupting working memory processes that help bind items to context. Using functional magnetic resonance imaging, we compared brain activity when participants remembered negative or neutral picture-location conjunctions (source memory) versus pictures only. Behaviorally, negative trials showed disruption of short-term source, but not picture, memory; long-term picture recognition memory was better for negative than for neutral pictures. Activity in areas involved in working memory and feature integration (precentral gyrus and its intersect with superior temporal gyrus) was attenuated on negative compared with neutral source trials relative to picture-only trials. Visual processing areas (middle occipital and lingual gyri) showed greater activity for negative than for neutral trials, especially on picture-only trials.

Impact of earthquake source complexity and land elevation data resolution on tsunami hazard assessment and fatality estimation

NASA Astrophysics Data System (ADS)

Muhammad, Ario; Goda, Katsuichiro

2018-03-01

This study investigates the impact of model complexity in source characterization and digital elevation model (DEM) resolution on the accuracy of tsunami hazard assessment and fatality estimation through a case study in Padang, Indonesia. Two types of earthquake source models, i.e. complex and uniform slip models, are adopted by considering three resolutions of DEMs, i.e. 150 m, 50 m, and 10 m. For each of the three grid resolutions, 300 complex source models are generated using new statistical prediction models of earthquake source parameters developed from extensive finite-fault models of past subduction earthquakes, whilst 100 uniform slip models are constructed with variable fault geometry without slip heterogeneity. The results highlight that significant changes to tsunami hazard and fatality estimates are observed with regard to earthquake source complexity and grid resolution. Coarse resolution (i.e. 150 m) leads to inaccurate tsunami hazard prediction and fatality estimation, whilst 50-m and 10-m resolutions produce similar results. However, velocity and momentum flux are sensitive to the grid resolution and hence, at least 10-m grid resolution needs to be implemented when considering flow-based parameters for tsunami hazard and risk assessments. In addition, the results indicate that the tsunami hazard parameters and fatality number are more sensitive to the complexity of earthquake source characterization than the grid resolution. Thus, the uniform models are not recommended for probabilistic tsunami hazard and risk assessments. Finally, the findings confirm that uncertainties of tsunami hazard level and fatality in terms of depth, velocity and momentum flux can be captured and visualized through the complex source modeling approach. From tsunami risk management perspectives, this indeed creates big data, which are useful for making effective and robust decisions.

Configurations of high-frequency ultrasonics complex vibration systems for packaging in microelectronics.

PubMed

Tsujino, Jiromaru; Harada, Yoshiki; Ihara, Shigeru; Kasahara, Kohei; Shimizu, Masanori; Ueoka, Tetsugi

2004-04-01

Ultrasonic high-frequency complex vibrations are effective for various ultrasonic high-power applications. Three types of ultrasonic complex vibration system with a welding tip vibrating elliptical to circular locus for packaging in microelectronics were studied. The complex vibration sources are using (1) a longitudinal-torsional vibration converter with diagonal slits that is driven only by a longitudinal vibration source, (2) a complex transverse vibration rod with several stepped parts that is driven by two longitudinal vibration source crossed at a right angle and (3) a longitudinal vibration circular disk and three longitudinal transducers that are installed at the circumference of the disk.

Interaction between like-charged polyelectrolyte-colloid complexes in electrolyte solutions: a Monte Carlo simulation study in the Debye-Hückel approximation.

PubMed

Truzzolillo, D; Bordi, F; Sciortino, F; Sennato, S

2010-07-14

We study the effective interaction between differently charged polyelectrolyte-colloid complexes in electrolyte solutions via Monte Carlo simulations. These complexes are formed when short and flexible polyelectrolyte chains adsorb onto oppositely charged colloidal spheres, dispersed in an electrolyte solution. In our simulations the bending energy between adjacent monomers is small compared to the electrostatic energy, and the chains, once adsorbed, do not exchange with the solution, although they rearrange on the particles surface to accommodate further adsorbing chains or due to the electrostatic interaction with neighbor complexes. Rather unexpectedly, when two interacting particles approach each other, the rearrangement of the surface charge distribution invariably produces antiparallel dipolar doublets that invert their orientation at the isoelectric point. These findings clearly rule out a contribution of dipole-dipole interactions to the observed attractive interaction between the complexes, pointing out that such suspensions cannot be considered dipolar fluids. On varying the ionic strength of the electrolyte, we find that a screening length kappa(-1), short compared with the size of the colloidal particles, is required in order to observe the attraction between like-charged complexes due to the nonuniform distribution of the electric charge on their surface ("patch attraction"). On the other hand, by changing the polyelectrolyte/particle charge ratio xi(s), the interaction between like-charged polyelectrolyte-decorated particles, at short separations, evolves from purely repulsive to strongly attractive. Hence, the effective interaction between the complexes is characterized by a potential barrier, whose height depends on the net charge and on the nonuniformity of their surface charge distribution.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gabriele, Fatuzzo; Michele, Mangiameli, E-mail: amichele.mangiameli@dica.unict.it; Giuseppe, Mussumeci

The laser scanning is a technology that allows in a short time to run the relief geometric objects with a high level of detail and completeness, based on the signal emitted by the laser and the corresponding return signal. When the incident laser radiation hits the object to detect, then the radiation is reflected. The purpose is to build a three-dimensional digital model that allows to reconstruct the reality of the object and to conduct studies regarding the design, restoration and/or conservation. When the laser scanner is equipped with a digital camera, the result of the measurement process is amore » set of points in XYZ coordinates showing a high density and accuracy with radiometric and RGB tones. In this case, the set of measured points is called “point cloud” and allows the reconstruction of the Digital Surface Model. Even the post-processing is usually performed by closed source software, which is characterized by Copyright restricting the free use, free and open source software can increase the performance by far. Indeed, this latter can be freely used providing the possibility to display and even custom the source code. The experience started at the Faculty of Engineering in Catania is aimed at finding a valuable free and open source tool, MeshLab (Italian Software for data processing), to be compared with a reference closed source software for data processing, i.e. RapidForm. In this work, we compare the results obtained with MeshLab and Rapidform through the planning of the survey and the acquisition of the point cloud of a morphologically complex statue.« less

Biomass burning contributions estimated by synergistic coupling of daily and hourly aerosol composition records.

PubMed

Nava, S; Lucarelli, F; Amato, F; Becagli, S; Calzolai, G; Chiari, M; Giannoni, M; Traversi, R; Udisti, R

2015-04-01

Biomass burning (BB) is a significant source of particulate matter (PM) in many parts of the world. Whereas numerous studies demonstrate the relevance of BB emissions in central and northern Europe, the quantification of this source has been assessed only in few cities in southern European countries. In this work, the application of Positive Matrix Factorisation (PMF) allowed a clear identification and quantification of an unexpected very high biomass burning contribution in Tuscany (central Italy), in the most polluted site of the PATOS project. In this urban background site, BB accounted for 37% of the mass of PM10 (particulate matter with aerodynamic diameter<10 μm) as annual average, and more than 50% during winter, being the main cause of all the PM10 limit exceedances. Due to the chemical complexity of BB emissions, an accurate assessment of this source contribution is not always easily achievable using just a single tracer. The present work takes advantage of the combination of a long-term daily data-set, characterized by an extended chemical speciation, with a short-term high time resolution (1-hour) and size-segregated data-set, obtained by PIXE analyses of streaker samples. The hourly time pattern of the BB source, characterised by a periodic behaviour with peaks starting at about 6 p.m. and lasting all the evening-night, and its strong seasonality, with higher values in the winter period, clearly confirmed the hypothesis of a domestic heating source (also excluding important contributions from wildfires and agricultural wastes burning). Copyright © 2014 Elsevier B.V. All rights reserved.

Fabrication and In Situ Testing of Scalable Nitrate-Selective Electrodes for Distributed Observations

NASA Astrophysics Data System (ADS)

Harmon, T. C.; Rat'ko, A.; Dietrich, H.; Park, Y.; Wijsboom, Y. H.; Bendikov, M.

2008-12-01

Inorganic nitrogen (nitrate (NO3-) and ammonium (NH+)) from chemical fertilizer and livestock waste is a major source of pollution in groundwater, surface water and the air. While some sources of these chemicals, such as waste lagoons, are well-defined, their application as fertilizer has the potential to create distributed or non-point source pollution problems. Scalable nitrate sensors (small and inexpensive) would enable us to better assess non-point source pollution processes in agronomic soils, groundwater and rivers subject to non-point source inputs. This work describes the fabrication and testing of inexpensive PVC-membrane- based ion selective electrodes (ISEs) for monitoring nitrate levels in soil water environments. ISE-based sensors have the advantages of being easy to fabricate and use, but suffer several shortcomings, including limited sensitivity, poor precision, and calibration drift. However, modern materials have begun to yield more robust ISE types in laboratory settings. This work emphasizes the in situ behavior of commercial and fabricated sensors in soils subject to irrigation with dairy manure water. Results are presented in the context of deployment techniques (in situ versus soil lysimeters), temperature compensation, and uncertainty analysis. Observed temporal responses of the nitrate sensors exhibited diurnal cycling with elevated nitrate levels at night and depressed levels during the day. Conventional samples collected via lysimeters validated this response. It is concluded that while modern ISEs are not yet ready for long-term, unattended deployment, short-term installations (on the order of 2 to 4 days) are viable and may provide valuable insights into nitrogen dynamics in complex soil systems.

Transcriptional and Physiological Characterizations of Escherichia coli MG1655 that have been grown under Low Shear Stress Environment for 1000 Generations

NASA Astrophysics Data System (ADS)

Karouia, Fathi; Tirumalai, Madhan R.; Nelman-Gonzalez, Mayra A.; Sams, Clarence F.; Ott, Mark C.; Pierson, Duane L.; Fofanov, Yuriy; Willson, Richard C.; Fox, George E.

Human space travelers experience a unique environment that affects homeostasis and physio-logic adaptation. One of the important regulatory biology interactions affected by space flight is the alteration of the immune response. As such, the impairment of the immune system may lead to higher risk of bacterial and/or viral infection during human space flight missions. Mi-crobiological contaminants have been a source of concern over the years for NASA and there is evidence to suggest that microbes in space do not behave like they do on Earth. Previ-ous studies have examined the physiological response of bacteria when exposed to short-term microgravity either during spaceflight or in a Low Shear Modeled Microgravity (LSMMG) en-vironment. Exposure to these environments has been found to induce increased resistance to stresses and antibiotics, and in one case increase of virulence. As NASA increases the duration of space flight missions and is starting to envision human presence on the lunar surface and Mars, it becomes legitimate to question the long-term effects of microgravity on bacteria. The effect of long-term exposure to LSMMG on microbial gene expression and physiology in Escherichia coli (E. coli) is being examined using functional genomics, and molecular tech-niques. In previous E. coli short term studies, reproducible changes in transcription were seen but no direct responses to changes in the gravity vector were identified. Instead, absence of shear and a randomized gravity vector appeared to cause local extra-cellular environmental changes, which elicited cellular responses. In order to evaluate the long-term effects of micro-gravity on bacteria, E. coli was grown under simulated microgravity for 1000 generations and gene expression patterns and cellular physiology were analyzed in comparison with short-term exposure. The analysis revealed that the long-term response differed significantly from the short-term exposure and 357 genes were expressed significantly differently. Fimbriae encoding genes were significantly up-regulated whereas genes encoding the flagellar motor complex were down-regulated. Additionally, 81 significantly expressed genes have been implicated in and/or associated with biofilm formation. The remaining up-regulated genes seemed to be involved in a response that triggered expression of genes associated with the type II secretion complex. This complex has been involved in virulence factors and members of the multidrug efflux system which confer resistance to a multitude of antimicrobial agents and antibiotics. Biofilm formation and the aggregation of cells were evaluated by scanning electron microscopy (SEM). The analysis revealed that extracellular matrix and complex cellular networking were present among cells that were exposed to the long-term LSMMG environment. In addition the response to a variety of stresses and antibiotics were examined. Significant differences were seen between long-term exposure to LSMMG and the short-term control. Changes in expression may predispose the cells to more efficiently attach to surfaces and/or other cells and thereby confer resistance to antibiotics. Future studies will seek to determine the extent to which the long-term adaptation is influenced by genomic changes. These studies will contribute to the knowledge base needed to develop countermeasures that will decrease the risks associated with astronaut health and mission integrity that are presented by microorganisms.

Short-term Music Training Enhances Complex, Distributed Neural Communication during Music and Linguistic Tasks

PubMed Central

Carpentier, Sarah M.; Moreno, Sylvain; McIntosh, Anthony R.

2016-01-01

Musical training is frequently associated with benefits to linguistic abilities, and recent focus has been placed on possible benefits of bilingualism to lifelong executive functions; however, the neural mechanisms for such effects are unclear. The aim of this study was to gain better understanding of the whole-brain functional effects of music and second-language training that could support such previously observed cognitive transfer effects. We conducted a 28-day longitudinal study of monolingual English-speaking 4- to 6-year-old children randomly selected to receive daily music or French language training, excluding weekends. Children completed passive EEG music note and French vowel auditory oddball detection tasks before and after training. Brain signal complexity was measured on source waveforms at multiple temporal scales as an index of neural information processing and network communication load. Comparing pretraining with posttraining, musical training was associated with increased EEG complexity at coarse temporal scales during the music and French vowel tasks in widely distributed cortical regions. Conversely, very minimal decreases in complexity at fine scales and trends toward coarse-scale increases were displayed after French training during the tasks. Spectral analysis failed to distinguish between training types and found overall theta (3.5–7.5 Hz) power increases after all training forms, with spatially fewer decreases in power at higher frequencies (>10 Hz). These findings demonstrate that musical training increased diversity of brain network states to support domain-specific music skill acquisition and music-to-language transfer effects. PMID:27243611

Short-term Music Training Enhances Complex, Distributed Neural Communication during Music and Linguistic Tasks.

PubMed

Carpentier, Sarah M; Moreno, Sylvain; McIntosh, Anthony R

2016-10-01

Musical training is frequently associated with benefits to linguistic abilities, and recent focus has been placed on possible benefits of bilingualism to lifelong executive functions; however, the neural mechanisms for such effects are unclear. The aim of this study was to gain better understanding of the whole-brain functional effects of music and second-language training that could support such previously observed cognitive transfer effects. We conducted a 28-day longitudinal study of monolingual English-speaking 4- to 6-year-old children randomly selected to receive daily music or French language training, excluding weekends. Children completed passive EEG music note and French vowel auditory oddball detection tasks before and after training. Brain signal complexity was measured on source waveforms at multiple temporal scales as an index of neural information processing and network communication load. Comparing pretraining with posttraining, musical training was associated with increased EEG complexity at coarse temporal scales during the music and French vowel tasks in widely distributed cortical regions. Conversely, very minimal decreases in complexity at fine scales and trends toward coarse-scale increases were displayed after French training during the tasks. Spectral analysis failed to distinguish between training types and found overall theta (3.5-7.5 Hz) power increases after all training forms, with spatially fewer decreases in power at higher frequencies (>10 Hz). These findings demonstrate that musical training increased diversity of brain network states to support domain-specific music skill acquisition and music-to-language transfer effects.

Ion Sources

NASA Astrophysics Data System (ADS)

Haseroth, Helmut; Hora, Heinrich

1993-03-01

Ion sources for accelerators are based on plasma configurations with an extraction system in order to gain a very high number of ions within an appropriately short pulse and of sufficiently high charge number Z for advanced research. Beginning with the duoplasmatron, all established ion sources are based on low-density plasmas, of which the electron beam ionization source (EBIS) and the electron cyclotron resonance (ECR) source are the most advanced; for example they result in pulses of nearly 6 × 108 fully stripped sulfur ions per pulse in the Super Proton Synchrotron (SPS) at CERN with energies of 200 GeV/u. As an example of a forthcoming development, we are reporting about the lead ion source for the same purpose. Contrary to these cases of low-density plasmas, where a rather long time is always necessary to generate sufficiently high charge states, the laser ion source uses very high density plasmas and therefore produced, for example in 1983, single shots of Au51+ ions of high directivity with energies above 300 MeV within 2 ns irradiation time of a gold target with a medium-to-large CO2 laser. Experiments at Dubna and Moscow, using small-size lasers, produced up to one million shots with 1 Hz sequence. After acceleration by a linac or otherwise, ion pulses of up to nearly 5 × 1010 ions of C4+ or Mg12+ with energies in the synchrotrons of up to 2 GeV/u were produced. The physics of the laser generation of the ions is most complex, as we know from laser fusion studies, including non-linear dynamic and dielectric effects, resonances, self-focusing, instabilities, double layers, and an irregular pulsation in the 20 ps range. This explains not only what difficulties are implied with the laser ion source, but also why it opens up a new direction of ion sources.

Innovative Tools for Water Quality/Quantity Management: New York City's Operations Support Tool

NASA Astrophysics Data System (ADS)

Wang, L.; Schaake, J. C.; Day, G. N.; Porter, J.; Sheer, D. P.; Pyke, G.

2011-12-01

The New York City Department of Environmental Protection (DEP) manages New York City's water supply, which is comprised of over 20 reservoirs and supplies more than 1 billion gallons of water per day to over 9 million customers. Recently, DEP has initiated design of an Operations Support Tool (OST), a state-of-the-art decision support system to provide computational and predictive support for water supply operations and planning. This presentation describes the technical structure of OST, including the underlying water supply and water quality models, data sources and database management, reservoir inflow forecasts, and the functionalities required to meet the needs of a diverse group of end users. OST is a major upgrade of DEP's current water supply - water quality model, developed to evaluate alternatives for controlling turbidity in NYC's Catskill reservoirs. While the current model relies on historical hydrologic and meteorological data, OST can be driven by forecasted future conditions. It will receive a variety of near-real-time data from a number of sources. OST will support two major types of simulations: long-term, for evaluating policy or infrastructure changes over an extended period of time; and short-term "position analysis" (PA) simulations, consisting of multiple short simulations, all starting from the same initial conditions. Typically, the starting conditions for a PA run will represent those for the current day and traces of forecasted hydrology will drive the model for the duration of the simulation period. The result of these simulations will be a distribution of future system states based on system operating rules and the range of input ensemble streamflow predictions. DEP managers will analyze the output distributions and make operation decisions using risk-based metrics such as probability of refill. Currently, in the developmental stages of OST, forecasts are based on antecedent hydrologic conditions and are statistical in nature. The statistical algorithm is a relatively simple and versatile, but lacks short-term skill critical for water quality and spill management. To improve short-term skill, OST will ultimately operate with meteorologically driven hydrologic forecasts provided by the National Weather Service (NWS). OST functionalities will support a wide range of DEP uses, including short term operational projections, outage planning and emergency management, operating rule development, and water supply planning. A core use of OST will be to inform reservoir management strategies to control and mitigate turbidity events while ensuring water supply reliability. OST will also allow DEP to manage its complex reservoir system to meet multiple objectives, including ecological flows, tailwater fisheries and recreational releases, and peak flow mitigation for downstream communities.

Cognitive Complexity of Mathematics Instructional Tasks in a Taiwanese Classroom: An Examination of Task Sources

ERIC Educational Resources Information Center

Hsu, Hui-Yu; Silver, Edward A.

2014-01-01

We examined geometric calculation with number tasks used within a unit of geometry instruction in a Taiwanese classroom, identifying the source of each task used in classroom instruction and analyzing the cognitive complexity of each task with respect to 2 distinct features: diagram complexity and problem-solving complexity. We found that…

Open Source GIS based integrated watershed management

NASA Astrophysics Data System (ADS)

Byrne, J. M.; Lindsay, J.; Berg, A. A.

2013-12-01

Optimal land and water management to address future and current resource stresses and allocation challenges requires the development of state-of-the-art geomatics and hydrological modelling tools. Future hydrological modelling tools should be of high resolution, process based with real-time capability to assess changing resource issues critical to short, medium and long-term enviromental management. The objective here is to merge two renowned, well published resource modeling programs to create an source toolbox for integrated land and water management applications. This work will facilitate a much increased efficiency in land and water resource security, management and planning. Following an 'open-source' philosophy, the tools will be computer platform independent with source code freely available, maximizing knowledge transfer and the global value of the proposed research. The envisioned set of water resource management tools will be housed within 'Whitebox Geospatial Analysis Tools'. Whitebox, is an open-source geographical information system (GIS) developed by Dr. John Lindsay at the University of Guelph. The emphasis of the Whitebox project has been to develop a user-friendly interface for advanced spatial analysis in environmental applications. The plugin architecture of the software is ideal for the tight-integration of spatially distributed models and spatial analysis algorithms such as those contained within the GENESYS suite. Open-source development extends knowledge and technology transfer to a broad range of end-users and builds Canadian capability to address complex resource management problems with better tools and expertise for managers in Canada and around the world. GENESYS (Generate Earth Systems Science input) is an innovative, efficient, high-resolution hydro- and agro-meteorological model for complex terrain watersheds developed under the direction of Dr. James Byrne. GENESYS is an outstanding research and applications tool to address challenging resource management issues in industry, government and nongovernmental agencies. Current research and analysis tools were developed to manage meteorological, climatological, and land and water resource data efficiently at high resolution in space and time. The deliverable for this work is a Whitebox-GENESYS open-source resource management capacity with routines for GIS based watershed management including water in agriculture and food production. We are adding urban water management routines through GENESYS in 2013-15 with an engineering PhD candidate. Both Whitebox-GAT and GENESYS are already well-established tools. The proposed research will combine these products to create an open-source geomatics based water resource management tool that is revolutionary in both capacity and availability to a wide array of Canadian and global users

Improve Reading with Complex Texts

ERIC Educational Resources Information Center

Fisher, Douglas; Frey, Nancy

2015-01-01

The Common Core State Standards have cast a renewed light on reading instruction, presenting teachers with the new requirements to teach close reading of complex texts. Teachers and administrators should consider a number of essential features of close reading: They are short, complex texts; rich discussions based on worthy questions; revisiting…

Bioavailability of polycyclic aromatic hydrocarbons (PAHs) to short-neck clam (Paphia undulata) from sediment matrices in mudflat ecosystem of the west coast of Peninsular Malaysia.

PubMed

Keshavarzifard, Mehrzad; Zakaria, Mohamad Pauzi; Hwai, Tan Shau

2017-06-01

The bioaccumulation and bioavailability of polycyclic aromatic hydrocarbons (PAHs) were characterized in sediment and Paphia undulata (short-neck clam) from six mudflat areas in the west coasts of Peninsular Malaysia. The concentrations of total PAHs varied from 357.1 to 6257.1 and 179.9 ± 7.6 to 1657.5 ± 53.9 ng g -1 dry weight in sediment and short-neck clam samples, respectively. PAHs can be classified as moderate to very high level of pollution in sediments and moderate to high level of pollution in short-neck clams. The diagnostic ratios of individual PAHs and principal component analysis indicate both petrogenic and pyrogenic sources with significant dominance of pyrogenic source. The first PAHs biota-sediment accumulation factors and relative biota-sediment accumulation factors data for short-neck clam were obtained in this study, indicating a preferential accumulation of lower molecular weight PAHs. Evaluation of PAH levels in sediments and short-neck clams indicates that short-neck clam could be introduced as a good biomonitor in mudflats. The results also demonstrated that under environmental conditions, the sedimentary load of hydrocarbons appears to be one of the factors controlling their bioavailability to biota.

Information entropy to measure the spatial and temporal complexity of solute transport in heterogeneous porous media

NASA Astrophysics Data System (ADS)

Li, Weiyao; Huang, Guanhua; Xiong, Yunwu

2016-04-01

The complexity of the spatial structure of porous media, randomness of groundwater recharge and discharge (rainfall, runoff, etc.) has led to groundwater movement complexity, physical and chemical interaction between groundwater and porous media cause solute transport in the medium more complicated. An appropriate method to describe the complexity of features is essential when study on solute transport and conversion in porous media. Information entropy could measure uncertainty and disorder, therefore we attempted to investigate complexity, explore the contact between the information entropy and complexity of solute transport in heterogeneous porous media using information entropy theory. Based on Markov theory, two-dimensional stochastic field of hydraulic conductivity (K) was generated by transition probability. Flow and solute transport model were established under four conditions (instantaneous point source, continuous point source, instantaneous line source and continuous line source). The spatial and temporal complexity of solute transport process was characterized and evaluated using spatial moment and information entropy. Results indicated that the entropy increased as the increase of complexity of solute transport process. For the point source, the one-dimensional entropy of solute concentration increased at first and then decreased along X and Y directions. As time increased, entropy peak value basically unchanged, peak position migrated along the flow direction (X direction) and approximately coincided with the centroid position. With the increase of time, spatial variability and complexity of solute concentration increase, which result in the increases of the second-order spatial moment and the two-dimensional entropy. Information entropy of line source was higher than point source. Solute entropy obtained from continuous input was higher than instantaneous input. Due to the increase of average length of lithoface, media continuity increased, flow and solute transport complexity weakened, and the corresponding information entropy also decreased. Longitudinal macro dispersivity declined slightly at early time then rose. Solute spatial and temporal distribution had significant impacts on the information entropy. Information entropy could reflect the change of solute distribution. Information entropy appears a tool to characterize the spatial and temporal complexity of solute migration and provides a reference for future research.

Emerging Techniques for Vicarious Calibration of Visible Through Short Wave Infrared Remote Sensing Systems

NASA Technical Reports Server (NTRS)

Ryan, Robert E.; Harrington, Gary; Holekamp, Kara; Pagnutti, Mary; Russell, Jeffrey; Frisbie, Troy; Stanley, Thomas

2007-01-01

Autonomous Visible to SWIR ground-based vicarious Cal/Val will be an essential Cal/Val component with such a large number of systems. Radiometrically calibrated spectroradiometers can improve confidence in current ground truth data through validation of radiometric modeling and validation or replacement of traditional sun photometer measurement. They also should enable significant reduction in deployed equipment such as equipment used in traditional sun photometer approaches. Simple, field-portable, white-light LED calibration source shows promise for visible range (420-750 nm). Prototype demonstrated <0.5% drift over 10-40 C temperature range. Additional complexity (more LEDs) will be necessary for extending spectral range into the NIR and SWIR. LED long lifetimes should produce at least several hundreds of hours or more of stability, minimizing the need for expensive calibrations and supporting long-duration field campaigns.

Human mobility in an emerging epidemic: a key aspect for response planning

NASA Astrophysics Data System (ADS)

Poletto, Chiara; Bajardi, Paolo; Colizza, Vittoria; Ramasco, Jose J.; Tizzoni, Michele; Vespignani, Alessandro

2010-03-01

Human mobility and interactions represent key ingredients in the spreading dynamics of an infectious disease. The flows of traveling people form a network characterized by complex features, such as strong topological and traffic heterogeneities, that unfolds at different temporal and spatial scales, from short ranges to the global scale. Computational models can be developed that integrate detailed network structures based on demographic and mobility data, in order to simulate the spatial evolution of an epidemic. Focusing on the recent A(H1N1) influenza pandemic as a paradigmatic example, these approaches allow the assessment of the interplay between individual mobility and epidemic dynamics, quantifying the effects of travel restrictions in delaying the epidemic spread and the role of mobility as an additional source of information for the understanding of the early outbreak.

Lunar and Planetary Science XXXV: Concerning Chondrites

NASA Technical Reports Server (NTRS)

2004-01-01

The Lunar and Planetary Science XXXV session entitled "Concerning Chondrites" includes the following topics: 1) Petrology and Raman Spectroscopy of Shocked Phases in the Gujba CB Chondrite and the Shock History of the CB Parent Body; 2) The Relationship Between CK and CV Chondrites: A Single Parent Body Source? 3) Samples of Asteroid Surface Ponded Deposits in Chondritic Meteorites; 4) Composition and Origin of SiO2-rich Objects in Carbonaceous and Ordinary Chondrites; 5) Re-Os Systematics and HSE distribution in Tieschitz (H3.6); Two Isochrons for One Meteorite; 6) Loss of Chromium from Olivine During the Metamorphism of Chondrites; 7) Very Short Delivery Times of Meteorites After the L-Chondrite Parent Body Break-Up 480 Myr Ago; and 8) The Complex Exposure History of a Very Large L/LL5 Chondrite Shower: Queen Alexandra Range 90201.

22 CFR 71.11 - Short-term full diet program.

Code of Federal Regulations, 2010 CFR

2010-04-01

..., including private funding from family or friends; and (3) If the funds exceed an amount to be established by... sources such as family or friends; (4) Because funds expended by the Department to cover the short-term...

22 CFR 71.11 - Short-term full diet program.

Code of Federal Regulations, 2011 CFR

2011-04-01

..., including private funding from family or friends; and (3) If the funds exceed an amount to be established by... sources such as family or friends; (4) Because funds expended by the Department to cover the short-term...

Theoretical study of refraction effects on noise produced by turbulent jets

NASA Technical Reports Server (NTRS)

Graham, E. W.; Graham, B. B.

1975-01-01

The transmission of acoustic disturbances from the interior of a jet into the ambient air is studied. The jet is assumed infinitely long with mean velocity profile independent of streamwise location. The noise generator is a sequence of transient sources drifting with the local fluid and confined to a short length of the jet. In Part 1, supersonic jets are considered. Numerical results for mean-square pressure versus angle in the far-field show unexpected peaks which are very sharp. Analysis of simplified models indicates that these are complex quasi-resonant effects which appear to the stationary observer in a high frequency range. The peaks are real for the idealized model, but would be smoothed by mathematical integration over source position, velocity, and frequency. Subsonic jets were considered in part 2, and a preliminary study of the near-field was attempted. Mean-square radial displacements (or mean radial energy flow or space-time correlations of radial pressure gradient) are first found for very simple cases. The most difficult case studied is a sequence of transient sources at the center of a uniform-velocity circular cylindrical jet. Here a numerical triple integration is required and seems feasible although only preliminary results for mean square radial displacement are now available. These preliminary results show disturbances decreasing with increasing radial distance, and with increasing distance upstream and downstream from the source. A trend towards greater downstream disturbances appears even in the near field.

Frequency-Dependent Rupture Processes for the 2011 Tohoku Earthquake

NASA Astrophysics Data System (ADS)

Miyake, H.

2012-12-01

The 2011 Tohoku earthquake is characterized by frequency-dependent rupture process [e.g., Ide et al., 2011; Wang and Mori, 2011; Yao et al., 2011]. For understanding rupture dynamics of this earthquake, it is extremely important to investigate wave-based source inversions for various frequency bands. The above frequency-dependent characteristics have been derived from teleseismic analyses. This study challenges to infer frequency-dependent rupture processes from strong motion waveforms of K-NET and KiK-net stations. The observations suggested three or more S-wave phases, and ground velocities at several near-source stations showed different arrivals of their long- and short-period components. We performed complex source spectral inversions with frequency-dependent phase weighting developed by Miyake et al. [2002]. The technique idealizes both the coherent and stochastic summation of waveforms using empirical Green's functions. Due to the limitation of signal-to-noise ratio of the empirical Green's functions, the analyzed frequency bands were set within 0.05-10 Hz. We assumed a fault plane with 480 km in length by 180 km in width with a single time window for rupture following Koketsu et al. [2011] and Asano and Iwata [2012]. The inversion revealed source ruptures expanding from the hypocenter, and generated sharp slip-velocity intensities at the down-dip edge. In addition to test the effects of empirical/hybrid Green's functions and with/without rupture front constraints on the inverted solutions, we will discuss distributions of slip-velocity intensity and a progression of wave generation with increasing frequency.

Testing the Nanoparticle-Allostatic Cross Adaptation-Sensitization Model for Homeopathic Remedy Effects

PubMed Central

Bell, Iris R.; Koithan, Mary; Brooks, Audrey J.

2012-01-01

Key concepts of the Nanoparticle-Allostatic Cross-Adaptation-Sensitization (NPCAS) Model for the action of homeopathic remedies in living systems include source nanoparticles as low level environmental stressors, heterotypic hormesis, cross-adaptation, allostasis (stress response network), time-dependent sensitization with endogenous amplification and bidirectional change, and self-organizing complex adaptive systems. The model accommodates the requirement for measurable physical agents in the remedy (source nanoparticles and/or source adsorbed to silica nanoparticles). Hormetic adaptive responses in the organism, triggered by nanoparticles; bipolar, metaplastic change, dependent on the history of the organism. Clinical matching of the patient’s symptom picture, including modalities, to the symptom pattern that the source material can cause (cross-adaptation and cross-sensitization). Evidence for nanoparticle-related quantum macro-entanglement in homeopathic pathogenetic trials. This paper examines research implications of the model, discussing the following hypotheses: Variability in nanoparticle size, morphology, and aggregation affects remedy properties and reproducibility of findings. Homeopathic remedies modulate adaptive allostatic responses, with multiple dynamic short- and long-term effects. Simillimum remedy nanoparticles, as novel mild stressors corresponding to the organism’s dysfunction initiate time-dependent cross-sensitization, reversing the direction of dysfunctional reactivity to environmental stressors. The NPCAS model suggests a way forward for systematic research on homeopathy. The central proposition is that homeopathic treatment is a form of nanomedicine acting by modulation of endogenous adaptation and metaplastic amplification processes in the organism to enhance long-term systemic resilience and health. PMID:23290882

The use of short and wide x-ray pulses for time-of-flight x-ray Compton Scatter Imaging in cargo security

NASA Astrophysics Data System (ADS)

Calvert, Nick; Betcke, Marta M.; Cresswell, John R.; Deacon, Alick N.; Gleeson, Anthony J.; Judson, Daniel S.; Mason, Peter; McIntosh, Peter A.; Morton, Edward J.; Nolan, Paul J.; Ollier, James; Procter, Mark G.; Speller, Robert D.

2015-05-01

Using a short pulse width x-ray source and measuring the time-of-flight of photons that scatter from an object under inspection allows for the point of interaction to be determined, and a profile of the object to be sampled along the path of the beam. A three dimensional image can be formed by interrogating the entire object. Using high energy x rays enables the inspection of cargo containers with steel walls, in the search for concealed items. A longer pulse width x-ray source can also be used with deconvolution techniques to determine the points of interaction. We present time-of-flight results from both short (picosecond) width and long (hundreds of nanoseconds) width x-ray sources, and show that the position of scatter can be localised with a resolution of 2 ns, equivalent to 30 cm, for a 3 cm thick plastic test object.

The evolution of colour pattern complexity: selection for conspicuousness favours contrasting within-body colour combinations in lizards.

PubMed

Pérez I de Lanuza, G; Font, E

2016-05-01

Many animals display complex colour patterns that comprise several adjacent, often contrasting colour patches. Combining patches of complementary colours increases the overall conspicuousness of the complex pattern, enhancing signal detection. Therefore, selection for conspicuousness may act not only on the design of single colour patches, but also on their combination. Contrasting long- and short-wavelength colour patches are located on the ventral and lateral surfaces of many lacertid lizards. As the combination of long- and short-wavelength-based colours generates local chromatic contrast, we hypothesized that selection may favour the co-occurrence of lateral and ventral contrasting patches, resulting in complex colour patterns that maximize the overall conspicuousness of the signal. To test this hypothesis, we performed a comparative phylogenetic study using a categorical colour classification based on spectral data and descriptive information on lacertid coloration collected from the literature. Our results demonstrate that conspicuous ventral (long-wavelength-based) and lateral (short-wavelength-based) colour patches co-occur throughout the lacertid phylogeny more often than expected by chance, especially in the subfamily Lacertini. These results suggest that selection promotes the evolution of the complex pattern rather than the acquisition of a single conspicuous colour patch, possibly due to the increased conspicuousness caused by the combination of colours with contrasting spectral properties. © 2016 European Society For Evolutionary Biology. Journal of Evolutionary Biology © 2016 European Society For Evolutionary Biology.

Use of collagen hydrolysate as a complex nitrogen source for the synthesis of penicillin by Penicillium chrysogenum.

PubMed

Leonhartsberger, S; Lafferty, R M; Korneti, L

1993-09-01

Optimal conditions for both biomass formation and penicillin synthesis by a strain of Penicillium chrysogenum were determined when using a collagen-derived nitrogen source. Preliminary investigations were carried out in shaken flask cultures employing a planned experimental program termed the Graeco-Latin square technique (Auden et al., 1967). It was initially determined that up to 30% of a conventional complex nitrogen source such as cottonseed meal could be replaced by the collagen-derived nitrogen source without decreasing the productivity with respect to the penicillin yield. In the pilot scale experiments using a 30 l stirred tank type of bioreactor, higher penicillin yields were obtained when 70% of the conventional complex nitrogen source in the form of cottonseed meal was replaced by the collagen hydrolysate. Furthermore, the maximum rate of penicillin synthesis continued for over a longer period when using collagen hydrolysate as a complex nitrogen source. Penicillin synthesis rates were determined using a linear regression.

The use of fermentation liquid of wastewater primary sedimentation sludge as supplemental carbon source for denitrification based on enhanced anaerobic fermentation.

PubMed

Liu, Feng; Tian, Yu; Ding, Yi; Li, Zhipeng

2016-11-01

Wastewater primary sedimentation sludge was prepared into fermentation liquid as denitrification carbon source, and the main components of fermentation liquid was short-chain volatile fatty acids. Meanwhile, the acetic acid and propionic acid respectively accounted for about 29.36% and 26.56% in short-chain volatile fatty acids. The performance of fermentation liquid, methanol, acetic acid, propionic acid and glucose used as sole carbon source were compared. It was found that the denitrification rate with fermentation liquid as carbon source was 0.17mgNO3(-)-N/mg mixed liquor suspended solid d, faster than that with methanol, acetic acid, and propionic acid as sole carbon source, and lower than that with glucose as sole carbon source. For the fermentation liquid as carbon source, the transient accumulation of nitrite was insignificantly under different initial total nitrogen concentration. Therefore, the use of fermentation liquid for nitrogen removal could improve denitrification rate, and reduce nitrite accumulation in denitrification process. Copyright © 2016 Elsevier Ltd. All rights reserved.

[Multiple colonic anastomoses in the surgical treatment of short bowel syndrome. A new technique].

PubMed

Robledo-Ogazón, Felipe; Becerril-Martínez, Guillermo; Hernández-Saldaña, Víctor; Zavala-Aznar, Marí Luisa; Bojalil-Durán, Luis

2008-01-01

Some surgical pathologies eventually require intestinal resection. This may lead to an extended procedure such as leaving 30 cm of proximal jejunum and left and sigmoid colon. One of the most important consequences of this type of resection is "intestinal failure" or short bowel syndrome. This complex syndrome leads to different metabolic and water and acid/base imbalances, as well as nutritional and immunological challenges along with the problem accompanying an abdomen subjected to many surgical procedures and high mortality. Many surgical techniques have been developed to improve quality of life of patients. We designed a non-transplant surgical approach and performed the procedure on two patients with postoperative short bowel syndrome with <40 cm of proximal jejunum and left colon. There are a variety of non-transplant surgical procedures that, due to their complex technique or high mortality rate, have not resolved this important problem. However, the technique we present in this work can be performed by a large number of surgeons. The procedure has a low morbimortality rate and offers the opportunity for better control of metabolic and acid/base balance, intestinal transit and proper nutrition. We consider that this technique offers a new alternative for the complex management required by patients with short bowel syndrome and facilitates their long-term nutritional control.

Seismic hazard assessment over time: Modelling earthquakes in Taiwan

NASA Astrophysics Data System (ADS)

Chan, Chung-Han; Wang, Yu; Wang, Yu-Ju; Lee, Ya-Ting

2017-04-01

To assess the seismic hazard with temporal change in Taiwan, we develop a new approach, combining both the Brownian Passage Time (BPT) model and the Coulomb stress change, and implement the seismogenic source parameters by the Taiwan Earthquake Model (TEM). The BPT model was adopted to describe the rupture recurrence intervals of the specific fault sources, together with the time elapsed since the last fault-rupture to derive their long-term rupture probability. We also evaluate the short-term seismicity rate change based on the static Coulomb stress interaction between seismogenic sources. By considering above time-dependent factors, our new combined model suggests an increased long-term seismic hazard in the vicinity of active faults along the western Coastal Plain and the Longitudinal Valley, where active faults have short recurrence intervals and long elapsed time since their last ruptures, and/or short-term elevated hazard levels right after the occurrence of large earthquakes due to the stress triggering effect. The stress enhanced by the February 6th, 2016, Meinong ML 6.6 earthquake also significantly increased rupture probabilities of several neighbouring seismogenic sources in Southwestern Taiwan and raised hazard level in the near future. Our approach draws on the advantage of incorporating long- and short-term models, to provide time-dependent earthquake probability constraints. Our time-dependent model considers more detailed information than any other published models. It thus offers decision-makers and public officials an adequate basis for rapid evaluations of and response to future emergency scenarios such as victim relocation and sheltering.

Acute effects of different light spectra on simulated night-shift work without circadian alignment.

PubMed

Canazei, Markus; Pohl, Wilfried; Bliem, Harald R; Weiss, Elisabeth M

2017-01-01

Short-wavelength and short-wavelength-enhanced light have a strong impact on night-time working performance, subjective feelings of alertness and circadian physiology. In the present study, we investigated acute effects of white light sources with varied reduced portions of short wavelengths on cognitive and visual performance, mood and cardiac output.Thirty-one healthy subjects were investigated in a balanced cross-over design under three light spectra in a simulated night-shift paradigm without circadian adaptation.Exposure to the light spectrum with the largest attenuation of short wavelengths reduced heart rate and increased vagal cardiac parameters during the night compared to the other two light spectra without deleterious effects on sustained attention, working memory and subjective alertness. In addition, colour discrimination capability was significantly decreased under this light source.To our knowledge, the present study for the first time demonstrates that polychromatic white light with reduced short wavelengths, fulfilling current lighting standards for indoor illumination, may have a positive impact on cardiac physiology of night-shift workers without detrimental consequences for cognitive performance and alertness.

Computational complexity of algorithms for sequence comparison, short-read assembly and genome alignment.

PubMed

Baichoo, Shakuntala; Ouzounis, Christos A

A multitude of algorithms for sequence comparison, short-read assembly and whole-genome alignment have been developed in the general context of molecular biology, to support technology development for high-throughput sequencing, numerous applications in genome biology and fundamental research on comparative genomics. The computational complexity of these algorithms has been previously reported in original research papers, yet this often neglected property has not been reviewed previously in a systematic manner and for a wider audience. We provide a review of space and time complexity of key sequence analysis algorithms and highlight their properties in a comprehensive manner, in order to identify potential opportunities for further research in algorithm or data structure optimization. The complexity aspect is poised to become pivotal as we will be facing challenges related to the continuous increase of genomic data on unprecedented scales and complexity in the foreseeable future, when robust biological simulation at the cell level and above becomes a reality. Copyright © 2017 Elsevier B.V. All rights reserved.

Small molecules CK-666 and CK-869 inhibit actin-related protein 2/3 complex by blocking an activating conformational change.

PubMed

Hetrick, Byron; Han, Min Suk; Helgeson, Luke A; Nolen, Brad J

2013-05-23

Actin-related protein 2/3 (Arp2/3) complex is a seven-subunit assembly that nucleates branched actin filaments. Small molecule inhibitors CK-666 and CK-869 bind to Arp2/3 complex and inhibit nucleation, but their modes of action are unknown. Here, we use biochemical and structural methods to determine the mechanism of each inhibitor. Our data indicate that CK-666 stabilizes the inactive state of the complex, blocking movement of the Arp2 and Arp3 subunits into the activated filament-like (short pitch) conformation, while CK-869 binds to a serendipitous pocket on Arp3 and allosterically destabilizes the short pitch Arp3-Arp2 interface. These results provide key insights into the relationship between conformation and activity in Arp2/3 complex and will be critical for interpreting the influence of the inhibitors on actin filament networks in vivo. Copyright © 2013 Elsevier Ltd. All rights reserved.

The MYStIX Infrared-Excess Source Catalog

NASA Astrophysics Data System (ADS)

Povich, Matthew S.; Kuhn, Michael A.; Getman, Konstantin V.; Busk, Heather A.; Feigelson, Eric D.; Broos, Patrick S.; Townsley, Leisa K.; King, Robert R.; Naylor, Tim

2013-12-01

The Massive Young Star-Forming Complex Study in Infrared and X-rays (MYStIX) project provides a comparative study of 20 Galactic massive star-forming complexes (d = 0.4-3.6 kpc). Probable stellar members in each target complex are identified using X-ray and/or infrared data via two pathways: (1) X-ray detections of young/massive stars with coronal activity/strong winds or (2) infrared excess (IRE) selection of young stellar objects (YSOs) with circumstellar disks and/or protostellar envelopes. We present the methodology for the second pathway using Spitzer/IRAC, 2MASS, and UKIRT imaging and photometry. Although IRE selection of YSOs is well-trodden territory, MYStIX presents unique challenges. The target complexes range from relatively nearby clouds in uncrowded fields located toward the outer Galaxy (e.g., NGC 2264, the Flame Nebula) to more distant, massive complexes situated along complicated, inner Galaxy sightlines (e.g., NGC 6357, M17). We combine IR spectral energy distribution (SED) fitting with IR color cuts and spatial clustering analysis to identify IRE sources and isolate probable YSO members in each MYStIX target field from the myriad types of contaminating sources that can resemble YSOs: extragalactic sources, evolved stars, nebular knots, and even unassociated foreground/background YSOs. Applying our methodology consistently across 18 of the target complexes, we produce the MYStIX IRE Source (MIRES) Catalog comprising 20,719 sources, including 8686 probable stellar members of the MYStIX target complexes. We also classify the SEDs of 9365 IR counterparts to MYStIX X-ray sources to assist the first pathway, the identification of X-ray-detected stellar members. The MIRES Catalog provides a foundation for follow-up studies of diverse phenomena related to massive star cluster formation, including protostellar outflows, circumstellar disks, and sequential star formation triggered by massive star feedback processes.

Optoelectronic Devices with Complex Failure Modes

NASA Technical Reports Server (NTRS)

Johnston, A.

2000-01-01

This part of the NSREC-2000 Short Course discusses radiation effects in basic photonic devices along with effects in more complex optoelectronic devices where the overall radiation response depends on several factors, with the possibility of multiple failure modes.

Neuroanatomy and transgenic technologies

USDA-ARS?s Scientific Manuscript database

This is a short review that introduces recent advances of neuroanatomy and transgenic technologies. The anatomical complexity of the nervous system remains a subject of tremendous fascination among neuroscientists. In order to tackle this extraordinary complexity, powerful transgenic technologies a...

The stability of the international oil trade network from short-term and long-term perspectives

NASA Astrophysics Data System (ADS)

Sun, Qingru; Gao, Xiangyun; Zhong, Weiqiong; Liu, Nairong

2017-09-01

To examine the stability of the international oil trade network and explore the influence of countries and trade relationships on the trade stability, we construct weighted and unweighted international oil trade networks based on complex network theory using oil trading data between countries from 1996 to 2014. We analyze the stability of international oil trade network (IOTN) from short-term and long-term aspects. From the short-term perspective, we find that the trade volumes play an important role on the stability. Moreover, the weighted IOTN is stable; however, the unweighted networks can better reflect the actual evolution of IOTN. From the long-term perspective, we identify trade relationships that are maintained during the whole sample period to reveal the situation of the whole international oil trade. We provide a way to quantitatively measure the stability of complex network from short-term and long-term perspectives, which can be applied to measure and analyze trade stability of other goods or services.

The rational design of a Au(I) precursor for focused electron beam induced deposition

PubMed Central

Marashdeh, Ali; Tiesma, Thiadrik; van Velzen, Niels J C; Harder, Sjoerd; Havenith, Remco W A; De Hosson, Jeff T M

2017-01-01

Au(I) complexes are studied as precursors for focused electron beam induced processing (FEBIP). FEBIP is an advanced direct-write technique for nanometer-scale chemical synthesis. The stability and volatility of the complexes are characterized to design an improved precursor for pure Au deposition. Aurophilic interactions are found to play a key role. The short lifetime of ClAuCO in vacuum is explained by strong, destabilizing Au–Au interactions in the solid phase. While aurophilic interactions do not affect the stability of ClAuPMe3, they leave the complex non-volatile. Comparison of crystal structures of ClAuPMe3 and MeAuPMe3 shows that Au–Au interactions are much weaker or partially even absent for the latter structure. This explains its high volatility. However, MeAuPMe3 dissociates unfavorably during FEBIP, making it an unsuitable precursor. The study shows that Me groups reduce aurophilic interactions, compared to Cl groups, which we attribute to electronic rather than steric effects. Therefore we propose MeAuCO as a potential FEBIP precursor. It is expected to have weak Au–Au interactions, making it volatile. It is stable enough to act as a volatile source for Au deposition, being stabilized by 6.5 kcal/mol. Finally, MeAuCO is likely to dissociate in a single step to pure Au. PMID:29354346

The Food Web of Potter Cove (Antarctica): complexity, structure and function

NASA Astrophysics Data System (ADS)

Marina, Tomás I.; Salinas, Vanesa; Cordone, Georgina; Campana, Gabriela; Moreira, Eugenia; Deregibus, Dolores; Torre, Luciana; Sahade, Ricardo; Tatián, Marcos; Barrera Oro, Esteban; De Troch, Marleen; Doyle, Santiago; Quartino, María Liliana; Saravia, Leonardo A.; Momo, Fernando R.

2018-01-01

Knowledge of the food web structure and complexity are central to better understand ecosystem functioning. A food-web approach includes both species and energy flows among them, providing a natural framework for characterizing species' ecological roles and the mechanisms through which biodiversity influences ecosystem dynamics. Here we present for the first time a high-resolution food web for a marine ecosystem at Potter Cove (northern Antarctic Peninsula). Eleven food web properties were analyzed in order to document network complexity, structure and topology. We found a low linkage density (3.4), connectance (0.04) and omnivory percentage (45), as well as a short path length (1.8) and a low clustering coefficient (0.08). Furthermore, relating the structure of the food web to its dynamics, an exponential degree distribution (in- and out-links) was found. This suggests that the Potter Cove food web may be vulnerable if the most connected species became locally extinct. For two of the three more connected functional groups, competition overlap graphs imply high trophic interaction between demersal fish and niche specialization according to feeding strategies in amphipods. On the other hand, the prey overlap graph shows also that multiple energy pathways of carbon flux exist across benthic and pelagic habitats in the Potter Cove ecosystem. Although alternative food sources might add robustness to the web, network properties (low linkage density, connectance and omnivory) suggest fragility and potential trophic cascade effects.

The rational design of a Au(I) precursor for focused electron beam induced deposition.

PubMed

Marashdeh, Ali; Tiesma, Thiadrik; van Velzen, Niels J C; Harder, Sjoerd; Havenith, Remco W A; De Hosson, Jeff T M; van Dorp, Willem F

2017-01-01

Au(I) complexes are studied as precursors for focused electron beam induced processing (FEBIP). FEBIP is an advanced direct-write technique for nanometer-scale chemical synthesis. The stability and volatility of the complexes are characterized to design an improved precursor for pure Au deposition. Aurophilic interactions are found to play a key role. The short lifetime of ClAuCO in vacuum is explained by strong, destabilizing Au-Au interactions in the solid phase. While aurophilic interactions do not affect the stability of ClAuPMe 3 , they leave the complex non-volatile. Comparison of crystal structures of ClAuPMe 3 and MeAuPMe 3 shows that Au-Au interactions are much weaker or partially even absent for the latter structure. This explains its high volatility. However, MeAuPMe 3 dissociates unfavorably during FEBIP, making it an unsuitable precursor. The study shows that Me groups reduce aurophilic interactions, compared to Cl groups, which we attribute to electronic rather than steric effects. Therefore we propose MeAuCO as a potential FEBIP precursor. It is expected to have weak Au-Au interactions, making it volatile. It is stable enough to act as a volatile source for Au deposition, being stabilized by 6.5 kcal/mol. Finally, MeAuCO is likely to dissociate in a single step to pure Au.

pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree

PubMed Central

2010-01-01

Background Likelihood-based phylogenetic inference is generally considered to be the most reliable classification method for unknown sequences. However, traditional likelihood-based phylogenetic methods cannot be applied to large volumes of short reads from next-generation sequencing due to computational complexity issues and lack of phylogenetic signal. "Phylogenetic placement," where a reference tree is fixed and the unknown query sequences are placed onto the tree via a reference alignment, is a way to bring the inferential power offered by likelihood-based approaches to large data sets. Results This paper introduces pplacer, a software package for phylogenetic placement and subsequent visualization. The algorithm can place twenty thousand short reads on a reference tree of one thousand taxa per hour per processor, has essentially linear time and memory complexity in the number of reference taxa, and is easy to run in parallel. Pplacer features calculation of the posterior probability of a placement on an edge, which is a statistically rigorous way of quantifying uncertainty on an edge-by-edge basis. It also can inform the user of the positional uncertainty for query sequences by calculating expected distance between placement locations, which is crucial in the estimation of uncertainty with a well-sampled reference tree. The software provides visualizations using branch thickness and color to represent number of placements and their uncertainty. A simulation study using reads generated from 631 COG alignments shows a high level of accuracy for phylogenetic placement over a wide range of alignment diversity, and the power of edge uncertainty estimates to measure placement confidence. Conclusions Pplacer enables efficient phylogenetic placement and subsequent visualization, making likelihood-based phylogenetics methodology practical for large collections of reads; it is freely available as source code, binaries, and a web service. PMID:21034504

Peclet number as affected by molecular diffusion controls transient anomalous transport in alluvial aquifer-aquitard complexes.

PubMed

Zhang, Yong; Green, Christopher T; Tick, Geoffrey R

2015-01-01

This study evaluates the role of the Peclet number as affected by molecular diffusion in transient anomalous transport, which is one of the major knowledge gaps in anomalous transport, by combining Monte Carlo simulations and stochastic model analysis. Two alluvial settings containing either short- or long-connected hydrofacies are generated and used as media for flow and transport modeling. Numerical experiments show that 1) the Peclet number affects both the duration of the power-law segment of tracer breakthrough curves (BTCs) and the transition rate from anomalous to Fickian transport by determining the solute residence time for a given low-permeability layer, 2) mechanical dispersion has a limited contribution to the anomalous characteristics of late-time transport as compared to molecular diffusion due to an almost negligible velocity in floodplain deposits, and 3) the initial source dimensions only enhance the power-law tail of the BTCs at short travel distances. A tempered stable stochastic (TSS) model is then applied to analyze the modeled transport. Applications show that the time-nonlocal parameters in the TSS model relate to the Peclet number, Pe. In particular, the truncation parameter in the TSS model increases nonlinearly with a decrease in Pe due to the decrease of the mean residence time, and the capacity coefficient increases with an increase in molecular diffusion which is probably due to the increase in the number of immobile particles. The above numerical experiments and stochastic analysis therefore reveal that the Peclet number as affected by molecular diffusion controls transient anomalous transport in alluvial aquifer-aquitard complexes. Copyright © 2015 Elsevier B.V. All rights reserved.

The construction of general basis functions in reweighting ensemble dynamics simulations: Reproduce equilibrium distribution in complex systems from multiple short simulation trajectories

NASA Astrophysics Data System (ADS)

Zhang, Chuan-Biao; Ming, Li; Xin, Zhou

2015-12-01

Ensemble simulations, which use multiple short independent trajectories from dispersive initial conformations, rather than a single long trajectory as used in traditional simulations, are expected to sample complex systems such as biomolecules much more efficiently. The re-weighted ensemble dynamics (RED) is designed to combine these short trajectories to reconstruct the global equilibrium distribution. In the RED, a number of conformational functions, named as basis functions, are applied to relate these trajectories to each other, then a detailed-balance-based linear equation is built, whose solution provides the weights of these trajectories in equilibrium distribution. Thus, the sufficient and efficient selection of basis functions is critical to the practical application of RED. Here, we review and present a few possible ways to generally construct basis functions for applying the RED in complex molecular systems. Especially, for systems with less priori knowledge, we could generally use the root mean squared deviation (RMSD) among conformations to split the whole conformational space into a set of cells, then use the RMSD-based-cell functions as basis functions. We demonstrate the application of the RED in typical systems, including a two-dimensional toy model, the lattice Potts model, and a short peptide system. The results indicate that the RED with the constructions of basis functions not only more efficiently sample the complex systems, but also provide a general way to understand the metastable structure of conformational space. Project supported by the National Natural Science Foundation of China (Grant No. 11175250).

Short-wavelength free-electron laser sources and science: a review

NASA Astrophysics Data System (ADS)

Seddon, E. A.; Clarke, J. A.; Dunning, D. J.; Masciovecchio, C.; Milne, C. J.; Parmigiani, F.; Rugg, D.; Spence, J. C. H.; Thompson, N. R.; Ueda, K.; Vinko, S. M.; Wark, J. S.; Wurth, W.

2017-11-01

This review is focused on free-electron lasers (FELs) in the hard to soft x-ray regime. The aim is to provide newcomers to the area with insights into: the basic physics of FELs, the qualities of the radiation they produce, the challenges of transmitting that radiation to end users and the diversity of current scientific applications. Initial consideration is given to FEL theory in order to provide the foundation for discussion of FEL output properties and the technical challenges of short-wavelength FELs. This is followed by an overview of existing x-ray FEL facilities, future facilities and FEL frontiers. To provide a context for information in the above sections, a detailed comparison of the photon pulse characteristics of FEL sources with those of other sources of high brightness x-rays is made. A brief summary of FEL beamline design and photon diagnostics then precedes an overview of FEL scientific applications. Recent highlights are covered in sections on structural biology, atomic and molecular physics, photochemistry, non-linear spectroscopy, shock physics, solid density plasmas. A short industrial perspective is also included to emphasise potential in this area. Dedicated to John M J Madey (1943-2016) and Rodolfo Bonifacio (1940-2016) whose perception, drive and perseverance paved the way for the realisation and development of short-wavelength free-electron lasers.

Coupling long and short term decisions in the design of urban water supply infrastructure for added reliability and flexibility

NASA Astrophysics Data System (ADS)

Marques, G.; Fraga, C. C. S.; Medellin-Azuara, J.

2016-12-01

The expansion and operation of urban water supply systems under growing demands, hydrologic uncertainty and water scarcity requires a strategic combination of supply sources for reliability, reduced costs and improved operational flexibility. The design and operation of such portfolio of water supply sources involves integration of long and short term planning to determine what and when to expand, and how much to use of each supply source accounting for interest rates, economies of scale and hydrologic variability. This research presents an integrated methodology coupling dynamic programming optimization with quadratic programming to optimize the expansion (long term) and operations (short term) of multiple water supply alternatives. Lagrange Multipliers produced by the short-term model provide a signal about the marginal opportunity cost of expansion to the long-term model, in an iterative procedure. A simulation model hosts the water supply infrastructure and hydrologic conditions. Results allow (a) identification of trade offs between cost and reliability of different expansion paths and water use decisions; (b) evaluation of water transfers between urban supply systems; and (c) evaluation of potential gains by reducing water system losses as a portfolio component. The latter is critical in several developing countries where water supply system losses are high and often neglected in favor of more system expansion.

Tectonic Interpretation of CHAMP Geopotential Data over the Northern Adriatic Sea.

NASA Astrophysics Data System (ADS)

Taylor, P. T.; Kim, H. R.; Mayer-Gürr, T.

2006-05-01

Recent aeromagnetic anomaly compilations (Chiappini et al., 2000 and Tontini et al., 2004) show a large positive (>700 nT) northwest-southeast trending magnetic anomaly off the Dalmatian coast. Unfortunately these aeromagnetic data cover only a part of this anomaly. We wanted to investigate if this large magnetic anomaly could be detected at satellite altitude and what is the extent and source of this feature. Therefore, magnetic and gravity anomaly maps were made from the CHAMP geopotential data, measured at the current low altitude of 345-350 km over the northern Adriatic Sea. We made the magnetic anomaly map over this relatively small region using 36 descending and 85 ascending orbits screened to be at the lowest altitude and the most magnetically quietest data. We removed the main field component (i.e., IGRF-10 up to degree and order 13) and then demeaned individual tracks and subtracted a second order polynomial to remove regional and/or un-modeled external field features. The resulting map from these well-correlated anomalies revealed a positive magnetic anomaly (>2 nT). Reduction-to-the pole brought these CHAMP anomaly features into coincidence with the aeromagnetic data. Previously Cantini et al. (1999) compared the surface magnetic data with MAGSAT by continuing upward the former and downwards the latter to 100 km and found a good correlation for wavelengths of 300-500 km. We also investigated the CHAMP gravity data. They were reduced using the kinematic short-arc integration method (Ilk et al., 2005 and Mayer Gürr et al., 2005). However, no corresponding short-wavelength gravity anomaly was observed in our study area. This tectonically complex region is under horizontal stress and the source of the large magnetic anomaly can be modelled by an associated ophiolite melange.

Muon Acceleration Concepts for NuMAX: "Dual-use" Linac and "Dogbone" RLA

DOE PAGES

Bogacz, S. A.

2018-02-01

In this paper, we summarize the current state of a concept for muon acceleration aimed at a future Neutrino Factory. The main thrust of these studies was to reduce the overall cost while maintaining performance by exploring the interplay between the complexity of the cooling systems and the acceptance of the accelerator complex. To ensure adequate survival for the short-lived muons, acceleration must occur at high average gradient. The need for large transverse and longitudinal acceptances drives the design of the acceleration system to an initially low RF frequency, e.g., 325 MHz, which is then increased to 650 MHz asmore » the transverse size shrinks with increasing energy. High-gradient normal conducting RF cavities at these frequencies require extremely high peak-power RF sources. Hence superconducting RF (SRF) cavities are chosen. Finally, we consider two cost effective schemes for accelerating muon beams for a stageable Neutrino Factory: exploration of the so-called "dual-use" linac concept, where the same linac structure is used for acceleration of both H - and muons and, alternatively, an SRF-efficient design based on a multi-pass (4.5) "dogbone" RLA, extendable to multi-pass FFAG-like arcs.« less

The space-time structure of oil and gas field growth in a complex depositional system

USGS Publications Warehouse

Drew, L.J.; Mast, R.F.; Schuenemeyer, J.H.

1994-01-01

Shortly after the discovery of an oil and gas field, an initial estimate is usually made of the ultimate recovery of the field. With the passage of time, this initial estimate is almost always revised upward. The phenomenon of the growth of the expected ultimate recovery of a field, which is known as "field growth," is important to resource assessment analysts for several reasons. First, field growth is the source of a large part of future additions to the inventory of proved reserves of crude oil and natural gas in most petroliferous areas of the world. Second, field growth introduces a large negative bias in the forecast of the future rates of discovery of oil and gas fields made by discovery process models. In this study, the growth in estimated ultimate recovery of oil and gas in fields made up of sandstone reservoirs formed in a complex depositional environment (Frio strand plain exploration play) is examined. The results presented here show how the growth of oil and gas fields is tied directly to the architectural element of the shoreline processes and tectonics that caused the deposition of the individual sand bodies hosting the producible hydrocarbon. ?? 1994 Oxford University Press.

Dual noise-like pulse and soliton operation of a fiber ring cavity

NASA Astrophysics Data System (ADS)

Bracamontes Rodríguez, Y. E.; Pottiez, O.; García Sanchez, E.; Lauterio Cruz, J. P.; Ibarra-Villalón, H.; Hernandez-Garcia, J. C.; Bello-Jimenez, M.; Beltrán-Pérez, G.; Ibarra-Escamilla, B.; Kuzin, E. A.

2017-03-01

Passively mode-locked fiber lasers (PML-FLs) are versatile sources that are capable of generating a broad variety of short and ultrashort optical pulses. Besides conservative solitons, PML-FLs allow the generation of different kinds of dissipative structures, usually called dissipative solitons, a concept that also encompasses more complex structures and collective behaviors such as soliton molecules, gas, rain of solitons, etc. In addition to this, PML-FLs are also able to generate even more complex objects, the so-called noise-like pulses (NLPs). A few recent research results revealed a connection between NLPs and solitons, a sign that deterministic ingredients enter into the composition of NLPs, whose nature is traditionally assumed to be random. Although it is usual that a fiber laser is able to generate either solitons or noise-like pulses, depending on pump power and adjustments in the cavity, these two regimes are rarely observed simultaneously. In this paper, a PML-FL in a ring configuration is presented, in which it is possible to observe and verify experimentally the simultaneous presence of NLPs and solitons. Interestingly, these two components are found in different spectral regions, which greatly facilitates their separation and individual study and characterization.

Rapid timing studies of black hole binaries in Optical and X-rays: correlated and non-linear variability

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gandhi, P.; Dhillon, V. S.; Durant, M.

2010-07-15

In a fast multi-wavelength timing study of black hole X-ray binaries (BHBs), we have discovered correlated optical and X-ray variability in the low/hard state of two sources: GX 339-4 and SWIFT J1753.5-0127. After XTE J1118+480, these are the only BHBs currently known to show rapid (sub-second) aperiodic optical flickering. Our simultaneous VLT/Ultracam and RXTE data reveal intriguing patterns with characteristic peaks, dips and lags down to very short timescales. Simple linear reprocessing models can be ruled out as the origin of the rapid, aperiodic optical power in both sources. A magnetic energy release model with fast interactions between the disk,more » jet and corona can explain the complex correlation patterns. We also show that in both the optical and X-ray light curves, the absolute source variability r.m.s. amplitude linearly increases with flux, and that the flares have a log-normal distribution. The implication is that variability at both wavelengths is not due to local fluctuations alone, but rather arises as a result of coupling of perturbations over a wide range of radii and timescales. These 'optical and X-ray rms-flux relations' thus provide new constraints to connect the outer and inner parts of the accretion flow, and the jet.« less

Depth-encoded all-fiber swept source polarization sensitive OCT

PubMed Central

Wang, Zhao; Lee, Hsiang-Chieh; Ahsen, Osman Oguz; Lee, ByungKun; Choi, WooJhon; Potsaid, Benjamin; Liu, Jonathan; Jayaraman, Vijaysekhar; Cable, Alex; Kraus, Martin F.; Liang, Kaicheng; Hornegger, Joachim; Fujimoto, James G.

2014-01-01

Polarization sensitive optical coherence tomography (PS-OCT) is a functional extension of conventional OCT and can assess depth-resolved tissue birefringence in addition to intensity. Most existing PS-OCT systems are relatively complex and their clinical translation remains difficult. We present a simple and robust all-fiber PS-OCT system based on swept source technology and polarization depth-encoding. Polarization multiplexing was achieved using a polarization maintaining fiber. Polarization sensitive signals were detected using fiber based polarization beam splitters and polarization controllers were used to remove the polarization ambiguity. A simplified post-processing algorithm was proposed for speckle noise reduction relaxing the demand for phase stability. We demonstrated systems design for both ophthalmic and catheter-based PS-OCT. For ophthalmic imaging, we used an optical clock frequency doubling method to extend the imaging range of a commercially available short cavity light source to improve polarization depth-encoding. For catheter based imaging, we demonstrated 200 kHz PS-OCT imaging using a MEMS-tunable vertical cavity surface emitting laser (VCSEL) and a high speed micromotor imaging catheter. The system was demonstrated in human retina, finger and lip imaging, as well as ex vivo swine esophagus and cardiovascular imaging. The all-fiber PS-OCT is easier to implement and maintain compared to previous PS-OCT systems and can be more easily translated to clinical applications due to its robust design. PMID:25401008

Analysis of CERN computing infrastructure and monitoring data

NASA Astrophysics Data System (ADS)

Nieke, C.; Lassnig, M.; Menichetti, L.; Motesnitsalis, E.; Duellmann, D.

2015-12-01

Optimizing a computing infrastructure on the scale of LHC requires a quantitative understanding of a complex network of many different resources and services. For this purpose the CERN IT department and the LHC experiments are collecting a large multitude of logs and performance probes, which are already successfully used for short-term analysis (e.g. operational dashboards) within each group. The IT analytics working group has been created with the goal to bring data sources from different services and on different abstraction levels together and to implement a suitable infrastructure for mid- to long-term statistical analysis. It further provides a forum for joint optimization across single service boundaries and the exchange of analysis methods and tools. To simplify access to the collected data, we implemented an automated repository for cleaned and aggregated data sources based on the Hadoop ecosystem. This contribution describes some of the challenges encountered, such as dealing with heterogeneous data formats, selecting an efficient storage format for map reduce and external access, and will describe the repository user interface. Using this infrastructure we were able to quantitatively analyze the relationship between CPU/wall fraction, latency/throughput constraints of network and disk and the effective job throughput. In this contribution we will first describe the design of the shared analysis infrastructure and then present a summary of first analysis results from the combined data sources.

APPLICATION OF CFD SIMULATIONS FOR SHORT-RANGE ATMOSPHERIC DISPERSION OVER OPEN FIELDS AND WITHIN ARRAYS OF BUILDINGS

EPA Science Inventory

Computational Fluid Dynamics (CFD) techniques are increasingly being applied to air quality modeling of short-range dispersion, especially the flow and dispersion around buildings and other geometrically complex structures. The proper application and accuracy of such CFD techniqu...

[Speech perception with electric-acoustic stimulation : Comparison with bilateral cochlear implant users in different noise conditions].

PubMed

Rader, T

2015-02-01

Cochlear implantation with the aim of hearing preservation for combined electric-acoustic stimulation (EAS) is the therapy of choice for patients with residual low-frequency hearing. Preserved residual acoustic hearing has a positive effect on speech intelligibility in difficult noise conditions. The goal of this study was to assess speech reception thresholds in various complex noise conditions for patients with EAS in comparison with patients using bilateral cochlear implants (CI). Speech perception in noise was measured for bilateral CI and EAS patient groups. A total of 22 listeners with normal hearing served as a control group. Speech reception thresholds (SRT) were measured using a closed-set sentence matrix test. Speech was presented with a single source in frontal position; noise was presented in frontal position or in a multisource noise field (MSNF) consisting of a four-loudspeaker array with independent noise sources. Modulated speech-simulating noise and pseudocontinuous noise served respectively as interference signal with different temporal characteristics. The average SRTs in the EAS group were significantly better in all test conditions than those of the group with bilateral CI. Both user groups showed significant improvement in the MSNF condition compared with the frontal noise condition as a result of bilateral interaction. The normal-hearing control group was able to use short temporal gaps in modulated noise to improve speech perception in noise (gap listening). This effect was absent in both implanted user groups. Patients with combined EAS in one ear and a hearing aid in the contralateral ear show significantly improved speech perception in complex noise conditions compared with bilateral CI recipients.

Short Chain Fatty Acids in the Colon and Peripheral Tissues: A Focus on Butyrate, Colon Cancer, Obesity and Insulin Resistance

PubMed Central

McNabney, Sean M.

2017-01-01

Increased dietary fiber consumption has been associated with many beneficial effects, including amelioration of obesity and insulin resistance. These effects may be due to the increased production of short chain fatty acids, including propionate, acetate and butyrate, during fermentation of the dietary fiber in the colon. Indeed, oral and dietary supplementation of butyrate alone has been shown to prevent high fat-diet induced obesity and insulin resistance. This review focuses on sources of short chain fatty acids, with emphasis on sources of butyrate, mechanisms of fiber and butyrate metabolism in the gut and its protective effects on colon cancer and the peripheral effects of butyrate supplementation in peripheral tissues in the prevention and reversal of obesity and insulin resistance. PMID:29231905

Resolving the Complexity of Human Skin Metagenomes Using Single-Molecule Sequencing

PubMed Central

Tsai, Yu-Chih; Deming, Clayton; Segre, Julia A.; Kong, Heidi H.; Korlach, Jonas

2016-01-01

ABSTRACT Deep metagenomic shotgun sequencing has emerged as a powerful tool to interrogate composition and function of complex microbial communities. Computational approaches to assemble genome fragments have been demonstrated to be an effective tool for de novo reconstruction of genomes from these communities. However, the resultant “genomes” are typically fragmented and incomplete due to the limited ability of short-read sequence data to assemble complex or low-coverage regions. Here, we use single-molecule, real-time (SMRT) sequencing to reconstruct a high-quality, closed genome of a previously uncharacterized Corynebacterium simulans and its companion bacteriophage from a skin metagenomic sample. Considerable improvement in assembly quality occurs in hybrid approaches incorporating short-read data, with even relatively small amounts of long-read data being sufficient to improve metagenome reconstruction. Using short-read data to evaluate strain variation of this C. simulans in its skin community at single-nucleotide resolution, we observed a dominant C. simulans strain with moderate allelic heterozygosity throughout the population. We demonstrate the utility of SMRT sequencing and hybrid approaches in metagenome quantitation, reconstruction, and annotation. PMID:26861018

Serum Hydroxyl Radical Scavenging Capacity as Quantified with Iron-Free Hydroxyl Radical Source

PubMed Central

Endo, Nobuyuki; Oowada, Shigeru; Sueishi, Yoshimi; Shimmei, Masashi; Makino, Keisuke; Fujii, Hirotada; Kotake, Yashige

2009-01-01

We have developed a simple ESR spin trapping based method for hydroxyl (OH) radical scavenging-capacity determination, using iron-free OH radical source. Instead of the widely used Fenton reaction, a short (typically 5 seconds) in situ UV-photolysis of a dilute hydrogen peroxide aqueous solution was employed to generate reproducible amounts of OH radicals. ESR spin trapping was applied to quantify OH radicals; the decrease in the OH radical level due to the specimen’s scavenging activity was converted into the OH radical scavenging capacity (rate). The validity of the method was confirmed in pure antioxidants, and the agreement with the previous data was satisfactory. In the second half of this work, the new method was applied to the sera of chronic renal failure (CRF) patients. We show for the first time that after hemodialysis, OH radical scavenging capacity of the CRF serum was restored to the level of healthy control. This method is simple and rapid, and the low concentration hydrogen peroxide is the only chemical added to the system, that could eliminate the complexity of iron-involved Fenton reactions or the use of the pulse-radiolysis system. PMID:19794928

Periodontal tissue engineering strategies based on nonoral stem cells.

PubMed

Requicha, João Filipe; Viegas, Carlos Alberto; Muñoz, Fernando; Reis, Rui Luís; Gomes, Manuela Estima

2014-01-01

Periodontal disease is an inflammatory disease which constitutes an important health problem in humans due to its enormous prevalence and life threatening implications on systemic health. Routine standard periodontal treatments include gingival flaps, root planning, application of growth/differentiation factors or filler materials and guided tissue regeneration. However, these treatments have come short on achieving regeneration ad integrum of the periodontium, mainly due to the presence of tissues from different embryonic origins and their complex interactions along the regenerative process. Tissue engineering (TE) aims to regenerate damaged tissue by providing the repair site with a suitable scaffold seeded with sufficient undifferentiated cells and, thus, constitutes a valuable alternative to current therapies for the treatment of periodontal defects. Stem cells from oral and dental origin are known to have potential to regenerate these tissues. Nevertheless, harvesting cells from these sites implies a significant local tissue morbidity and low cell yield, as compared to other anatomical sources of adult multipotent stem cells. This manuscript reviews studies describing the use of non-oral stem cells in tissue engineering strategies, highlighting the importance and potential of these alternative stem cells sources in the development of advanced therapies for periodontal regeneration. Copyright © 2013 Wiley Periodicals, Inc.

Propagation of acoustic shock waves between parallel rigid boundaries and into shadow zones

DOE Office of Scientific and Technical Information (OSTI.GOV)

Desjouy, C., E-mail: cyril.desjouy@gmail.com; Ollivier, S.; Dragna, D.

2015-10-28

The study of acoustic shock propagation in complex environments is of great interest for urban acoustics, but also for source localization, an underlying problematic in military applications. To give a better understanding of the phenomenon taking place during the propagation of acoustic shocks, laboratory-scale experiments and numerical simulations were performed to study the propagation of weak shock waves between parallel rigid boundaries, and into shadow zones created by corners. In particular, this work focuses on the study of the local interactions taking place between incident, reflected, and diffracted waves according to the geometry in both regular or irregular – alsomore » called Von Neumann – regimes of reflection. In this latter case, an irregular reflection can lead to the formation of a Mach stem that can modify the spatial distribution of the acoustic pressure. Short duration acoustic shock waves were produced by a 20 kilovolts electric spark source and a schlieren optical method was used to visualize the incident shockfront and the reflection/diffraction patterns. Experimental results are compared to numerical simulations based on the high-order finite difference solution of the two dimensional Navier-Stokes equations.« less

Fast low-level light pulses from the night sky observed with the SKYFLASH program

NASA Astrophysics Data System (ADS)

Winckler, J. R.; Franz, R. C.; Nemzek, R. J.

1993-05-01

This paper presents further discussion of and new data on fast subvisual increases in the luminosity of the night sky described in our previous papers. A detailed technical description of the simple telescopic photometers used in the project SKYFLASH and their mode of operation including the detection of polarized Rayleigh-scattered flashes is provided. Distant lightning storms account for many of the events, and the complex relations between short and long luminous pulses with and without sferics are shown by examples from a new computerized data system, supplemented by two low-light-level TV cameras. Of particular interest are the previously observed 'long' events having a slow rise and fall, 20-ms duration, and showing small polarization and no coincident sferic. A group of such events on September 22-23 during the invasion of U.S. coasts by Hurricane Hugo, is discussed in detail. The recently observed 'plume' cloud-top-to-stratosphere lightning event is suggested as a possible source type for these flashes. An alternative source may be exploding meteors, recently identified during SKYFLASH observations by low-light-level television techniques as the origin of some sky-wide flash events described herein.

Fast low-level light pulses from the night sky observed with the SKYFLASH program

NASA Technical Reports Server (NTRS)

Winckler, J. R.; Franz, R. C.; Nemzek, R. J.

1993-01-01

This paper presents further discussion of and new data on fast subvisual increases in the luminosity of the night sky described in our previous papers. A detailed technical description of the simple telescopic photometers used in the project SKYFLASH and their mode of operation including the detection of polarized Rayleigh-scattered flashes is provided. Distant lightning storms account for many of the events, and the complex relations between short and long luminous pulses with and without sferics are shown by examples from a new computerized data system, supplemented by two low-light-level TV cameras. Of particular interest are the previously observed 'long' events having a slow rise and fall, 20-ms duration, and showing small polarization and no coincident sferic. A group of such events on September 22-23 during the invasion of U.S. coasts by Hurricane Hugo, is discussed in detail. The recently observed 'plume' cloud-top-to-stratosphere lightning event is suggested as a possible source type for these flashes. An alternative source may be exploding meteors, recently identified during SKYFLASH observations by low-light-level television techniques as the origin of some sky-wide flash events described herein.

Impacts of black carbon and co-pollutant emissions from transportation sector in Mexico City

NASA Astrophysics Data System (ADS)

Zavala, Miguel; Almanza, Victor; Garcia, Agustin; Jazcilevich, Aron; Lei, Wenfang; Molina, Luisa

2016-04-01

Black carbon is one of the most important short-lived climate-forcing agents, which is harmful to human health and also contributes significantly to climate change. Transportation is one of the largest sources of black carbon emissions in many megacities and urban complexes, with diesel vehicles leading the way. Both on-road and off-road vehicles can emit substantial amounts of harmful BC-containing particulate matter (PM) and are also responsible for large emissions of carbon dioxide (CO2), carbon monoxide (CO), nitrogen oxides (NOx), and many other co-emitted volatile organic compounds (VOCs). Regionally, black carbon emissions contributions from mobile sources may vary widely depending on the technical characteristics of the vehicle fleet, the quality and chemical properties of the fuels consumed, and the degree of local development and economic activities that foster wider and more frequent or intensive use of vehicles. This presentation will review and assess the emissions of black carbon from the on-road and off-road transportation sector in the Mexico City Metropolitan Area. Viable mitigation strategies, including innovative technological alternatives to reduce black carbon and co-pollutants in diesel vehicles and their impacts on climate, human health and ecosystems will be described.

Medium chain triglycerides (MCT) formulas in paediatric and allergological practice.

PubMed

Łoś-Rycharska, Ewa; Kieraszewicz, Zuzanna; Czerwionka-Szaflarska, Mieczysława

2016-01-01

Fats constitute the most significant nutritional source of energy. Their proper use by the body conditions a number of complex mechanisms of digestion, absorption, distribution, and metabolism. These mechanisms are facilitated by fats made of medium chain fatty acids; therefore, they are an easy and quick source of energy. Thus, an increased supply of medium chain triglycerides (MCT) is particularly important in patients with disturbances of digestion and absorption such as disturbed bile secretion, classic coeliac disease, short bowel syndrome, inflammatory diseases of the intestines, disturbed outflow of lymph, some metabolic disease, and severe food allergies, as well as in prematurely born neonates. Use of preparations containing an additive of MCT is limited, especially if they are to be used for a longer period of time. With a large quantity of MCT in a diet, there is a risk of deficiency of necessary unsaturated fatty acids and some fat-soluble vitamins. The caloricity of MTC compared to long-chain triglycerides is lower, and formulas with MCT are characterised by higher osmolality. Medium chain triglycerides is not recommended as an additive to standard formulas for healthy children. The use of MCT should be limited to strictly specified medical indications.

Medium chain triglycerides (MCT) formulas in paediatric and allergological practice

PubMed Central

Łoś-Rycharska, Ewa; Kieraszewicz, Zuzanna

2016-01-01

Fats constitute the most significant nutritional source of energy. Their proper use by the body conditions a number of complex mechanisms of digestion, absorption, distribution, and metabolism. These mechanisms are facilitated by fats made of medium chain fatty acids; therefore, they are an easy and quick source of energy. Thus, an increased supply of medium chain triglycerides (MCT) is particularly important in patients with disturbances of digestion and absorption such as disturbed bile secretion, classic coeliac disease, short bowel syndrome, inflammatory diseases of the intestines, disturbed outflow of lymph, some metabolic disease, and severe food allergies, as well as in prematurely born neonates. Use of preparations containing an additive of MCT is limited, especially if they are to be used for a longer period of time. With a large quantity of MCT in a diet, there is a risk of deficiency of necessary unsaturated fatty acids and some fat-soluble vitamins. The caloricity of MTC compared to long-chain triglycerides is lower, and formulas with MCT are characterised by higher osmolality. Medium chain triglycerides is not recommended as an additive to standard formulas for healthy children. The use of MCT should be limited to strictly specified medical indications. PMID:28053676

Simulation of the ocean's spectral radiant thermal source and boundary conditions

NASA Astrophysics Data System (ADS)

Merzlikin, Vladimir; Krass, Maxim; Cheranev, Svyatoslav; Aloric, Aleksandra

2013-05-01

This article considers the analysis of radiant heat transfer for semitransparent natural and polluted seawaters and its physical interpretations. Technogenic or natural pollutions are considered as ensembles of selective scattering, absorbing and emitting particles with complex refractive indices in difference spectral ranges of external radiation. Simulation of spectral radiant thermal sources within short wavelength of solar penetrating radiation for upper oceanic depth was carried out for deep seawater on regions from ˜ 300 to ˜ 600 nm and for subsurface layers (not more ˜ 1 m) - on one ˜ 600 - 1200 nm. Model boundary conditions on exposed oceanic surface are defined by (1) emittance of atmosphere and seawater within long wavelength radiation ˜ 9000 nm, (2) convection, and (3) thermal losses due to evaporation. Spatial and temporal variability of inherent optical properties, temperature distributions of the upper overheated layer of seawater, the appearance of a subsurface temperature maximum and a cool surface skin layer in response to penetrating solar radiation are explained first of all by the effects of volumetric scattering (absorption) and surface cooling of polluted seawater. The suggested analysis can become an important and useful subject of research for oceanographers and climatologists.

Pollution monitoring using networks of honey bees

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bromenshenk, J.J.; Dewart, M.L.; Thomas, J.M.

1983-08-01

Each year thousands of chemicals in large quantities are introduced into the global environment and the need for effective methods of monitoring these substances has steadily increased. Most monitoring programs rely upon instrumentation to measure specific contaminants in air, water, or soil. However, it has become apparent that humans and their environment are exposed to complex mixtures of chemicals rather than single entities. As our ability to detect ever smaller quantities of pollutants has increased, the biological significance of these findings has become more uncertain. Also, it is clear that monitoring efforts should shift from short-term studies of easily identifiablemore » sources in localized areas to long-term studies of multiple sources over widespread regions. Our investigations aim at providing better tools to meet these exigencies. Honey bees are discussed as an effective, long-term, self-sustaining system for monitoring environmental impacts. Our results indicate that the use of regional, and possibly national or international, capability can be realized with the aid of beekeepers in obtaining samples and conducting measurements. This approach has the added advantage of public involvement in environmental problem solving and protection of human health and environmental quality.« less

SOURCES OF PCBS TO THE ATMOSPHERE IN CHICAGO

EPA Science Inventory

The project will obtain additional short-term PCB samples in southwestern Chicago to determine the amount of PCB emissions to the air from a sludge drying facility. Four different types of samples will be collected: (1) short-term ambient air samples surrounding the drying beds,...

Melanoma cells present high levels of HLA-A2-tyrosinase in association with instability and aberrant intracellular processing of tyrosinase.

PubMed

Michaeli, Yael; Sinik, Keren; Haus-Cohen, Maya; Reiter, Yoram

2012-04-01

Short-lived protein translation products are proposed to be a major source of substrates for major histocompatibility complex (MHC) class I antigen processing and presentation; however, a direct link between protein stability and the presentation level of MHC class I-peptide complexes has not been made. We have recently discovered that the peptide Tyr((369-377)) , derived from the tyrosinase protein is highly presented by HLA-A2 on the surface of melanoma cells. To examine the molecular mechanisms responsible for this presentation, we compared characteristics of tyrosinase in melanoma cells lines that present high or low levels of HLA-A2-Tyr((369-377)) complexes. We found no correlation between mRNA levels and the levels of HLA-A2-Tyr((369-377)) presentation. Co-localization experiments revealed that, in cell lines presenting low levels of HLA-A2-Tyr((369-377)) complexes, tyrosinase co-localizes with LAMP-1, a melanosome marker, whereas in cell lines presenting high HLA-A2-Tyr((369-377)) levels, tyrosinase localizes to the endoplasmic reticulum. We also observed differences in tyrosinase molecular weight and glycosylation composition as well as major differences in protein stability (t(1/2) ). By stabilizing the tyrosinase protein, we observed a dramatic decrease in HLA-A2-tyrosinase presentation. Our findings suggest that aberrant processing and instability of tyrosinase are responsible for the high presentation of HLA-A2-Tyr((369-377)) complexes and thus shed new light on the relationship between intracellular processing, stability of proteins, and MHC-restricted peptide presentation. © 2012 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Bounding the role of black carbon in the climate system: A scientific assessment

NASA Astrophysics Data System (ADS)

Bond, T. C.; Doherty, S. J.; Fahey, D. W.; Forster, P. M.; Berntsen, T.; DeAngelo, B. J.; Flanner, M. G.; Ghan, S.; Kärcher, B.; Koch, D.; Kinne, S.; Kondo, Y.; Quinn, P. K.; Sarofim, M. C.; Schultz, M. G.; Schulz, M.; Venkataraman, C.; Zhang, H.; Zhang, S.; Bellouin, N.; Guttikunda, S. K.; Hopke, P. K.; Jacobson, M. Z.; Kaiser, J. W.; Klimont, Z.; Lohmann, U.; Schwarz, J. P.; Shindell, D.; Storelvmo, T.; Warren, S. G.; Zender, C. S.

2013-06-01

carbon aerosol plays a unique and important role in Earth's climate system. Black carbon is a type of carbonaceous material with a unique combination of physical properties. This assessment provides an evaluation of black-carbon climate forcing that is comprehensive in its inclusion of all known and relevant processes and that is quantitative in providing best estimates and uncertainties of the main forcing terms: direct solar absorption; influence on liquid, mixed phase, and ice clouds; and deposition on snow and ice. These effects are calculated with climate models, but when possible, they are evaluated with both microphysical measurements and field observations. Predominant sources are combustion related, namely, fossil fuels for transportation, solid fuels for industrial and residential uses, and open burning of biomass. Total global emissions of black carbon using bottom-up inventory methods are 7500 Gg yr-1 in the year 2000 with an uncertainty range of 2000 to 29000. However, global atmospheric absorption attributable to black carbon is too low in many models and should be increased by a factor of almost 3. After this scaling, the best estimate for the industrial-era (1750 to 2005) direct radiative forcing of atmospheric black carbon is +0.71 W m-2 with 90% uncertainty bounds of (+0.08, +1.27) W m-2. Total direct forcing by all black carbon sources, without subtracting the preindustrial background, is estimated as +0.88 (+0.17, +1.48) W m-2. Direct radiative forcing alone does not capture important rapid adjustment mechanisms. A framework is described and used for quantifying climate forcings, including rapid adjustments. The best estimate of industrial-era climate forcing of black carbon through all forcing mechanisms, including clouds and cryosphere forcing, is +1.1 W m-2 with 90% uncertainty bounds of +0.17 to +2.1 W m-2. Thus, there is a very high probability that black carbon emissions, independent of co-emitted species, have a positive forcing and warm the climate. We estimate that black carbon, with a total climate forcing of +1.1 W m-2, is the second most important human emission in terms of its climate forcing in the present-day atmosphere; only carbon dioxide is estimated to have a greater forcing. Sources that emit black carbon also emit other short-lived species that may either cool or warm climate. Climate forcings from co-emitted species are estimated and used in the framework described herein. When the principal effects of short-lived co-emissions, including cooling agents such as sulfur dioxide, are included in net forcing, energy-related sources (fossil fuel and biofuel) have an industrial-era climate forcing of +0.22 (-0.50 to +1.08) W m-2 during the first year after emission. For a few of these sources, such as diesel engines and possibly residential biofuels, warming is strong enough that eliminating all short-lived emissions from these sources would reduce net climate forcing (i.e., produce cooling). When open burning emissions, which emit high levels of organic matter, are included in the total, the best estimate of net industrial-era climate forcing by all short-lived species from black-carbon-rich sources becomes slightly negative (-0.06 W m-2 with 90% uncertainty bounds of -1.45 to +1.29 W m-2). The uncertainties in net climate forcing from black-carbon-rich sources are substantial, largely due to lack of knowledge about cloud interactions with both black carbon and co-emitted organic carbon. In prioritizing potential black-carbon mitigation actions, non-science factors, such as technical feasibility, costs, policy design, and implementation feasibility play important roles. The major sources of black carbon are presently in different stages with regard to the feasibility for near-term mitigation. This assessment, by evaluating the large number and complexity of the associated physical and radiative processes in black-carbon climate forcing, sets a baseline from which to improve future climate forcing estimates.

Bounding the Role of Black Carbon in the Climate System: a Scientific Assessment

NASA Technical Reports Server (NTRS)

Bond, T. C.; Doherty, S. J.; Fahey, D. W.; Forster, P. M.; Bernsten, T.; DeAngelo, B. J.; Flanner, M. G.; Ghan, S.; Karcher, B.; Koch, D.;

12 CFR 201.4 - Availability and terms of credit.

Code of Federal Regulations, 2014 CFR

2014-01-01

... overnight, as a backup source of funding to a depository institution that is in generally sound financial... to a few weeks as a backup source of funding to a depository institution if, in the judgment of the... very short-term basis, usually overnight, as a backup source of funding to a depository institution...

Rugby versus Soccer in South Africa: Content Familiarity Contributes to Cross-Cultural Differences in Cognitive Test Scores

ERIC Educational Resources Information Center

Malda, Maike; van de Vijver, Fons J. R.; Temane, Q. Michael

2010-01-01

In this study, cross-cultural differences in cognitive test scores are hypothesized to depend on a test's cultural complexity (Cultural Complexity Hypothesis: CCH), here conceptualized as its content familiarity, rather than on its cognitive complexity (Spearman's Hypothesis: SH). The content familiarity of tests assessing short-term memory,…

Systematic neutron guide misalignment for an accelerator-driven spallation neutron source

NASA Astrophysics Data System (ADS)

Zendler, C.; Bentley, P. M.

2016-08-01

The European Spallation Source (ESS) is a long pulse spallation neutron source that is currently under construction in Lund, Sweden. A considerable fraction of the 22 planned instruments extend as far as 75-150 m from the source. In such long beam lines, misalignment between neutron guide segments can decrease the neutron transmission significantly. In addition to a random misalignment from installation tolerances, the ground on which ESS is built can be expected to sink with time, and thus shift the neutron guide segments further away from the ideal alignment axis in a systematic way. These systematic errors are correlated to the ground structure, position of buildings and shielding installation. Since the largest deformation is expected close to the target, even short instruments might be noticeably affected. In this study, the effect of this systematic misalignment on short and long ESS beam lines is analyzed, and a possible mitigation by overillumination of subsequent guide sections investigated.

Analysis and Synthesis of Tonal Aircraft Noise Sources

NASA Technical Reports Server (NTRS)

Allen, Matthew P.; Rizzi, Stephen A.; Burdisso, Ricardo; Okcu, Selen

2012-01-01

Fixed and rotary wing aircraft operations can have a significant impact on communities in proximity to airports. Simulation of predicted aircraft flyover noise, paired with listening tests, is useful to noise reduction efforts since it allows direct annoyance evaluation of aircraft or operations currently in the design phase. This paper describes efforts to improve the realism of synthesized source noise by including short term fluctuations, specifically for inlet-radiated tones resulting from the fan stage of turbomachinery. It details analysis performed on an existing set of recorded turbofan data to isolate inlet-radiated tonal fan noise, then extract and model short term tonal fluctuations using the analytic signal. Methodologies for synthesizing time-variant tonal and broadband turbofan noise sources using measured fluctuations are also described. Finally, subjective listening test results are discussed which indicate that time-variant synthesized source noise is perceived to be very similar to recordings.

Heart rate complexity in sinoaortic-denervated mice.

PubMed

Silva, Luiz Eduardo V; Rodrigues, Fernanda Luciano; de Oliveira, Mauro; Salgado, Hélio Cesar; Fazan, Rubens

2015-02-01

What is the central question of this study? New measurements for cardiovascular complexity, such as detrended fluctuation analysis (DFA) and multiscale entropy (MSE), have been shown to predict cardiovascular outcomes. Given that cardiovascular diseases are accompanied by autonomic imbalance and decreased baroreflex sensitivity, the central question is: do baroreceptors contribute to cardiovascular complexity? What is the main finding and its importance? Sinoaortic denervation altered both DFA scaling exponents and MSE, indicating that both short- and long-term mechanisms of complexity are altered in sinoaortic denervated mice, resulting in a loss of physiological complexity. These results suggest that the baroreflex is a key element in the complex structures involved in heart rate variability regulation. Recently, heart rate (HR) oscillations have been recognized as complex behaviours derived from non-linear processes. Physiological complexity theory is based on the idea that healthy systems present high complexity, i.e. non-linear, fractal variability at multiple scales, with long-range correlations. The loss of complexity in heart rate variability (HRV) has been shown to predict adverse cardiovascular outcomes. Based on the idea that most cardiovascular diseases are accompanied by autonomic imbalance and a decrease in baroreflex sensitivity, we hypothesize that the baroreflex plays an important role in complex cardiovascular behaviour. Mice that had been subjected to sinoaortic denervation (SAD) were implanted with catheters in the femoral artery and jugular vein 5 days prior to the experiment. After recording the baseline arterial pressure (AP), pulse interval time series were generated from the intervals between consecutive values of diastolic pressure. The complexity of the HRV was determined using detrended fluctuation analysis and multiscale entropy. The detrended fluctuation analysis α1 scaling exponent (a short-term index) was remarkably decreased in the SAD mice (0.79 ± 0.06 versus 1.13 ± 0.04 for the control mice), whereas SAD slightly increased the α2 scaling exponent (a long-term index; 1.12 ± 0.03 versus 1.04 ± 0.02 for control mice). In the SAD mice, the total multiscale entropy was decreased (13.2 ± 1.3) compared with the control mice (18.9 ± 1.4). In conclusion, fractal and regularity structures of HRV are altered in SAD mice, affecting both short- and long-term mechanisms of complexity, suggesting that the baroreceptors play a considerable role in the complex structure of HRV. © 2014 The Authors. Experimental Physiology © 2014 The Physiological Society.

Normal sensorimotor plasticity in complex regional pain syndrome with fixed posture of the hand.

PubMed

Morgante, Francesca; Naro, Antonino; Terranova, Carmen; Russo, Margherita; Rizzo, Vincenzo; Risitano, Giovanni; Girlanda, Paolo; Quartarone, Angelo

2017-01-01

Movement disorders associated with complex regional pain syndrome type I have been a subject of controversy over the last 10 years regarding their nature and pathophysiology, with an intense debate about the functional (psychogenic) nature of this disorder. The aim of this study was to test sensorimotor plasticity and cortical excitability in patients with complex regional pain syndrome type I who developed a fixed posture of the hand. Ten patients with complex regional pain syndrome type I in the right upper limb and a fixed posture of the hand (disease duration less than 24 months) and 10 age-matched healthy subjects were enrolled. The following parameters of corticospinal excitability were recorded from the abductor pollicis brevis muscle of both hands by transcranial magnetic stimulation: resting and active motor thresholds, short-interval intracortical inhibition and facilitation, cortical silent period, and short- and long-latency afferent inhibition. Sensorimotor plasticity was tested using the paired associative stimulation protocol. Short-interval intracortical inhibition and long-latency afferent inhibition were reduced only in the affected right hand of patients compared with control subjects. Sensorimotor plasticity was comparable to normal subjects, with a preserved topographic specificity. Our data support the view that motor disorder in complex regional pain syndrome type I is not associated with abnormal sensorimotor plasticity, and it shares pathophysiological abnormalities with functional (psychogenic) dystonia rather than with idiopathic dystonia. © 2016 International Parkinson and Movement Disorder Society. © 2016 International Parkinson and Movement Disorder Society.

The nature of crustal boundaries: combined interpretation of wide-angle and normal-incidence seismic data

NASA Astrophysics Data System (ADS)

Long, Roger E.; Matthews, Patricia A.; Graham, Daniel P.

1994-04-01

After a few seconds two-way traveltime, normal-incidence seismic reflection sections are composed mainly of assemblages of short reflections. Very rarely are seen continuous reflections that might correspond to the Moho or a mid-crustal discontinuity. The inferred continuity of these boundaries has traditionally come from refraction seismology. There is now a body of high quality, coincident wide-angle and normal-incidence seismic data that have been recorded with 50-100 m shot spacing and with high frequency sources (e.g. MOBIL, BABEL). The complexity and characteristics of the wide-angle arrivals seen on these data suggest that they do not originate from continuous boundaries. It is suggested that these arrivals are reflections from the same assemblage of short length reflectors that are responsible for normal-incidence reflections. Seismic velocities below the middle crust may (1) change corresponding to normal-incidence reflectivity, or (2) generally increase with depth with localised sills or lens structures of different velocity accounting for the observed reflections. Wide-angle arrivals that have traditionally been identified as reflections from crustal boundaries (e.g. the mid-crust and Moho) and which were considered indicative of a sharp velocity discontinuity from continuous boundaries, may instead result from a concentration of lamellae.

Spatiotemporal Distribution and Alpine Behavior of Short Chain Chlorinated Paraffins in Air at Shergyla Mountain and Lhasa on the Tibetan Plateau of China.

PubMed

Wu, Jing; Gao, Wei; Liang, Yong; Fu, Jianjie; Gao, Yan; Wang, Yawei; Jiang, Guibin

2017-10-03

Pristine high-altitude mountains are ideal areas for studying the potential mechanism behind the long-range transport and environmental behavior of persistent organic pollutants in remote areas. Short chain chlorinated paraffins (SCCPs) are the most complex halogenated contaminants in the environment, and have attracted extensive worldwide interest in recent years. In this study, the spatiotemporal concentrations and distributions of SCCPs in air collected from Shergyla Mountain (located in the southeast of the Tibetan Plateau) and Lhasa were investigated during 2012-2015. Generally, the total SCCP levels at Shergyla Mountain and Lhasa were between 130 and 1300 pg/m 3 and 1100-14440 pg/m 3 , respectively. C 10 and C 11 components were the most abundant homologue groups, indicating that lighter SCCP homologue groups are capable of relatively long-range atmospheric transport. Relatively high but insignificant atmospheric SCCP concentrations at Shergyla Mountain area and Lhasa were observed from 2013 to 2015 compared with 2012. At Shergyla Mountain, SCCP concentrations on the eastern and western slopes increased with altitude, implying that "mountain cold-trapping" might occur for SCCPs. A back-trajectory model showed that SCCP sources at Shergyla Mountain and Lhasa were primarily influenced by the tropical monsoon from Southwest and South Asia.

Some ecological guidelines for large-scale biomass plantations

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hoffman, W.; Cook, J.H.; Beyea, J.

1993-12-31

The National Audubon Society sees biomass as an appropriate and necessary source of energy to help replace fossil fuels in the near future, but is concerned that large-scale biomass plantations could displace significant natural vegetation and wildlife habitat, and reduce national and global biodiversity. We support the development of an industry large enough to provide significant portions of our energy budget, but we see a critical need to ensure that plantations are designed and sited in ways that minimize ecological disruption, or even provide environmental benefits. We have been studying the habitat value of intensively managed short-rotation tree plantations. Ourmore » results show that these plantations support large populations of some birds, but not all of the species using the surrounding landscape, and indicate that their value as habitat can be increased greatly by including small areas of mature trees within them. We believe short-rotation plantations can benefit regional biodiversity if they can be deployed as buffers for natural forests, or as corridors connecting forest tracts. To realize these benefits, and to avoid habitat degradation, regional biomass plantation complexes (e.g., the plantations supplying all the fuel for a powerplant) need to be planned, sited, and developed as large-scale units in the context of the regional landscape mosaic.« less

Identifying Memory Allocation Patterns in HEP Software

NASA Astrophysics Data System (ADS)

Kama, S.; Rauschmayr, N.

2017-10-01

HEP applications perform an excessive amount of allocations/deallocations within short time intervals which results in memory churn, poor locality and performance degradation. These issues are already known for a decade, but due to the complexity of software frameworks and billions of allocations for a single job, up until recently no efficient mechanism has been available to correlate these issues with source code lines. However, with the advent of the Big Data era, many tools and platforms are now available to do large scale memory profiling. This paper presents, a prototype program developed to track and identify each single (de-)allocation. The CERN IT Hadoop cluster is used to compute memory key metrics, like locality, variation, lifetime and density of allocations. The prototype further provides a web based visualization back-end that allows the user to explore the results generated on the Hadoop cluster. Plotting these metrics for every single allocation over time gives a new insight into application’s memory handling. For instance, it shows which algorithms cause which kind of memory allocation patterns, which function flow causes how many short-lived objects, what are the most commonly allocated sizes etc. The paper will give an insight into the prototype and will show profiling examples for the LHC reconstruction, digitization and simulation jobs.

Tracking global changes induced in the CD4 T-cell receptor repertoire by immunization with a complex antigen using short stretches of CDR3 protein sequence.

PubMed

Thomas, Niclas; Best, Katharine; Cinelli, Mattia; Reich-Zeliger, Shlomit; Gal, Hilah; Shifrut, Eric; Madi, Asaf; Friedman, Nir; Shawe-Taylor, John; Chain, Benny

2014-11-15

The clonal theory of adaptive immunity proposes that immunological responses are encoded by increases in the frequency of lymphocytes carrying antigen-specific receptors. In this study, we measure the frequency of different T-cell receptors (TcR) in CD4 + T cell populations of mice immunized with a complex antigen, killed Mycobacterium tuberculosis, using high throughput parallel sequencing of the TcRβ chain. Our initial hypothesis that immunization would induce repertoire convergence proved to be incorrect, and therefore an alternative approach was developed that allows accurate stratification of TcR repertoires and provides novel insights into the nature of CD4 + T-cell receptor recognition. To track the changes induced by immunization within this heterogeneous repertoire, the sequence data were classified by counting the frequency of different clusters of short (3 or 4) continuous stretches of amino acids within the antigen binding complementarity determining region 3 (CDR3) repertoire of different mice. Both unsupervised (hierarchical clustering) and supervised (support vector machine) analyses of these different distributions of sequence clusters differentiated between immunized and unimmunized mice with 100% efficiency. The CD4 + TcR repertoires of mice 5 and 14 days postimmunization were clearly different from that of unimmunized mice but were not distinguishable from each other. However, the repertoires of mice 60 days postimmunization were distinct both from naive mice and the day 5/14 animals. Our results reinforce the remarkable diversity of the TcR repertoire, resulting in many diverse private TcRs contributing to the T-cell response even in genetically identical mice responding to the same antigen. However, specific motifs defined by short stretches of amino acids within the CDR3 region may determine TcR specificity and define a new approach to TcR sequence classification. The analysis was implemented in R and Python, and source code can be found in Supplementary Data. b.chain@ucl.ac.uk Supplementary data are available at Bioinformatics online. © The Author 2014. Published by Oxford University Press.

The Saccharomyces cerevisiae Mre11-Rad50-Xrs2 complex promotes trinucleotide repeat expansions independently of homologous recombination.

PubMed

Ye, Yanfang; Kirkham-McCarthy, Lucy; Lahue, Robert S

2016-07-01

Trinucleotide repeats (TNRs) are tandem arrays of three nucleotides that can expand in length to cause at least 17 inherited human diseases. Somatic expansions in patients can occur in differentiated tissues where DNA replication is limited and cannot be a primary source of somatic mutation. Instead, mouse models of TNR diseases have shown that both inherited and somatic expansions can be suppressed by the loss of certain DNA repair factors. It is generally believed that these repair factors cause misprocessing of TNRs, leading to expansions. Here we extend this idea to show that the Mre11-Rad50-Xrs2 (MRX) complex of Saccharomyces cerevisiae is a causative factor in expansions of short TNRs. Mutations that eliminate MRX subunits led to significant suppression of expansions whereas mutations that inactivate Rad51 had only a minor effect. Coupled with previous evidence, this suggests that MRX drives expansions of short TNRs through a process distinct from homologous recombination. The nuclease function of Mre11 was dispensable for expansions, suggesting that expansions do not occur by Mre11-dependent nucleolytic processing of the TNR. Epistasis between MRX and post-replication repair (PRR) was tested. PRR protects against expansions, so a rad5 mutant gave a high expansion rate. In contrast, the mre11 rad5 double mutant gave a suppressed expansion rate, indistinguishable from the mre11 single mutant. This suggests that MRX creates a TNR substrate for PRR. Protein acetylation was also tested as a mechanism regulating MRX activity in expansions. Six acetylation sites were identified in Rad50. Mutation of all six lysine residues to arginine gave partial bypass of a sin3 HDAC mutant, suggesting that Rad50 acetylation is functionally important for Sin3-mediated expansions. Overall we conclude that yeast MRX helps drive expansions of short TNRs by a mechanism distinct from its role in homologous recombination and independent of the nuclease function of Mre11. Copyright © 2016 Elsevier B.V. All rights reserved.

EXAMPLE APPLICATION OF CFD SIMULATIONS FOR SHORT-RANGE ATMOSPHERIC DISPERSION OVER THE OPEN FIELDS OF PROJECT PRAIRIE GRASS

EPA Science Inventory

Computational Fluid Dynamics (CFD) techniques are increasingly being applied to air quality modeling of short-range dispersion, especially the flow and dispersion around buildings and other geometrically complex structures. The proper application and accuracy of such CFD techniqu...

Fifteen years of APC/cyclosome: a short and impressive biography.

PubMed

Simpson-Lavy, Kobi J; Oren, Yifat S; Feine, Oren; Sajman, Julia; Listovsky, Tammy; Brandeis, Michael

2010-02-01

The APC/C (anaphase-promoting complex/cyclosome) discovered exactly 15 years ago by Avram Heshko and Marc Kirschner is by far the most complex ubiquitin ligase discovered so far. The APC/C is composed of roughly a dozen subunits and measures a massive 1.5 MDa. This huge complex, as well as its multiple modes of regulation, boasts impressive evolutionary conservation. One of its most puzzling features is its split personality: regulation of mitotic exit events on the one hand, and its ongoing activity during G(1)-phase, G(0)-phase and in terminally differentiated cells. The present short review is intended to provide a basic description of our current understanding of the APC/C, focusing on recent findings concerning its role in G(1)-phase and in differentiated cells.

Short-Period Surface Wave Based Seismic Event Relocation

NASA Astrophysics Data System (ADS)

White-Gaynor, A.; Cleveland, M.; Nyblade, A.; Kintner, J. A.; Homman, K.; Ammon, C. J.

2017-12-01

Accurate and precise seismic event locations are essential for a broad range of geophysical investigations. Superior location accuracy generally requires calibration with ground truth information, but superb relative location precision is often achievable independently. In explosion seismology, low-yield explosion monitoring relies on near-source observations, which results in a limited number of observations that challenges our ability to estimate any locations. Incorporating more distant observations means relying on data with lower signal-to-noise ratios. For small, shallow events, the short-period (roughly 1/2 to 8 s period) fundamental-mode and higher-mode Rayleigh waves (including Rg) are often the most stable and visible portion of the waveform at local distances. Cleveland and Ammon [2013] have shown that teleseismic surface waves are valuable observations for constructing precise, relative event relocations. We extend the teleseismic surface wave relocation method, and apply them to near-source distances using Rg observations from the Bighorn Arche Seismic Experiment (BASE) and the Earth Scope USArray Transportable Array (TA) seismic stations. Specifically, we present relocation results using short-period fundamental- and higher-mode Rayleigh waves (Rg) in a double-difference relative event relocation for 45 delay-fired mine blasts and 21 borehole chemical explosions. Our preliminary efforts are to explore the sensitivity of the short-period surface waves to local geologic structure, source depth, explosion magnitude (yield), and explosion characteristics (single-shot vs. distributed source, etc.). Our results show that Rg and the first few higher-mode Rayleigh wave observations can be used to constrain the relative locations of shallow low-yield events.

Meteoroid Environment Modeling: The Meteoroid Engineering Model and Shower Forecasting

NASA Technical Reports Server (NTRS)

Moorhead, Althea V.

2017-01-01

The meteoroid environment is often divided conceptually into meteor showers and the sporadic meteor background. It is commonly but incorrectly assumed that meteoroid impacts primarily occur during meteor showers; instead, the vast majority of hazardous meteoroids belong to the sporadic complex. Unlike meteor showers, which persist for a few hours to a few weeks, sporadic meteoroids impact the Earth's atmosphere and spacecraft throughout the year. The Meteoroid Environment Office (MEO) has produced two environment models to handle these cases: the Meteoroid Engineering Model (MEM) and an annual meteor shower forecast. The sporadic complex, despite its year-round activity, is not isotropic in its directionality. Instead, their apparent points of origin, or radiants, are organized into groups called "sources". The speed, directionality, and size distribution of these sporadic sources are modeled by the Meteoroid Engineering Model (MEM), which is currently in its second major release version (MEMR2) [Moorhead et al., 2015]. MEM provides the meteoroid flux relative to a user-provided spacecraft trajectory; it provides the total flux as well as the flux per angular bin, speed interval, and on specific surfaces (ram, wake, etc.). Because the sporadic complex dominates the meteoroid flux, MEM is the most appropriate model to use in spacecraft design. Although showers make up a small fraction of the meteoroid environment, they can produce significant short-term enhancements of the meteoroid flux. Thus, it can be valuable to consider showers when assessing risks associated with vehicle operations that are brief in duration. To assist with such assessments, the MEO issues an annual forecast that reports meteor shower fluxes as a function of time and compares showers with the time-averaged total meteoroid flux. This permits missions to do quick assessments of the increase in risk posed by meteor showers. Section II describes MEM in more detail and describes our current efforts to improve its characteristics for a future release. Section III describes the annual shower forecast and highlights recent improvements made to its algorithm and inputs.

On the tradeoffs of programming language choice for numerical modelling in geoscience. A case study comparing modern Fortran, C++/Blitz++ and Python/NumPy.

NASA Astrophysics Data System (ADS)

Jarecka, D.; Arabas, S.; Fijalkowski, M.; Gaynor, A.

2012-04-01

The language of choice for numerical modelling in geoscience has long been Fortran. A choice of a particular language and coding paradigm comes with different set of tradeoffs such as that between performance, ease of use (and ease of abuse), code clarity, maintainability and reusability, availability of open source compilers, debugging tools, adequate external libraries and parallelisation mechanisms. The availability of trained personnel and the scale and activeness of the developer community is of importance as well. We present a short comparison study aimed at identification and quantification of these tradeoffs for a particular example of an object oriented implementation of a parallel 2D-advection-equation solver in Python/NumPy, C++/Blitz++ and modern Fortran. The main angles of comparison will be complexity of implementation, performance of various compilers or interpreters and characterisation of the "added value" gained by a particular choice of the language. The choice of the numerical problem is dictated by the aim to make the comparison useful and meaningful to geoscientists. Python is chosen as a language that traditionally is associated with ease of use, elegant syntax but limited performance. C++ is chosen for its traditional association with high performance but even higher complexity and syntax obscurity. Fortran is included in the comparison for its widespread use in geoscience often attributed to its performance. We confront the validity of these traditional views. We point out how the usability of a particular language in geoscience depends on the characteristics of the language itself and the availability of pre-existing software libraries (e.g. NumPy, SciPy, PyNGL, PyNIO, MPI4Py for Python and Blitz++, Boost.Units, Boost.MPI for C++). Having in mind the limited complexity of the considered numerical problem, we present a tentative comparison of performance of the three implementations with different open source compilers including CPython and PyPy, Clang++ and GNU g++, and GNU gfortran.

Workplace stress in nursing: a literature review.

PubMed

McVicar, Andrew

2003-12-01

Stress perception is highly subjective, and so the complexity of nursing practice may result in variation between nurses in their identification of sources of stress, especially when the workplace and roles of nurses are changing, as is currently occurring in the United Kingdom health service. This could have implications for measures being introduced to address problems of stress in nursing. To identify nurses' perceptions of workplace stress, consider the potential effectiveness of initiatives to reduce distress, and identify directions for future research. A literature search from January 1985 to April 2003 was conducted using the key words nursing, stress, distress, stress management, job satisfaction, staff turnover and coping to identify research on sources of stress in adult and child care nursing. Recent (post-1997) United Kingdom Department of Health documents and literature about the views of practitioners was also consulted. Workload, leadership/management style, professional conflict and emotional cost of caring have been the main sources of distress for nurses for many years, but there is disagreement as to the magnitude of their impact. Lack of reward and shiftworking may also now be displacing some of the other issues in order of ranking. Organizational interventions are targeted at most but not all of these sources, and their effectiveness is likely to be limited, at least in the short to medium term. Individuals must be supported better, but this is hindered by lack of understanding of how sources of stress vary between different practice areas, lack of predictive power of assessment tools, and a lack of understanding of how personal and workplace factors interact. Stress intervention measures should focus on stress prevention for individuals as well as tackling organizational issues. Achieving this will require further comparative studies, and new tools to evaluate the intensity of individual distress.

Multiscale modeling of multi-decadal trends in air pollutant concentrations and their radiative properties: the role of models in an integrated observing system

NASA Astrophysics Data System (ADS)

Mathur, R.; Xing, J.; Szykman, J.; Gan, C. M.; Hogrefe, C.; Pleim, J. E.

2015-12-01

Air Pollution simulation models must address the increasing complexity arising from new model applications that treat multi-pollutant interactions across varying space and time scales. Setting and attaining lower ambient air quality standards requires an improved understanding and quantification of source attribution amongst the multiple anthropogenic and natural sources, on time scales ranging from episodic to annual and spatial scales ranging from urban to continental. Changing emission patterns over the developing regions of the world are likely to exacerbate the impacts of long-range pollutant transport on background pollutant levels, which may then impact the attainment of local air quality standards. Thus, strategies for reduction of pollution levels of surface air over a region are complicated not only by the interplay of local emissions sources and several complex physical, chemical, dynamical processes in the atmosphere, but also hemispheric background levels of pollutants. Additionally, as short-lived climate forcers, aerosols and ozone exert regionally heterogeneous radiative forcing and influence regional climate trends. EPA's coupled WRF-CMAQ modeling system is applied over a domain encompassing the northern hemisphere for the period spanning 1990-2010. This period has witnessed significant reductions in anthropogenic emissions in North America and Europe as a result of implementation of control measures and dramatic increases across Asia associated with economic and population growth, resulting in contrasting trends in air pollutant distributions and transport patterns across the northern hemisphere. Model results (trends in pollutant concentrations, optical and radiative characteristics) across the northern hemisphere are analyzed in conjunction with surface, aloft and remote sensing measurements to contrast the differing trends in air pollution and aerosol-radiation interactions in these regions over the past two decades. Given the future LEO (TropOMI) and GEO (Sentinel-4, GEMS, and TEMPO) atmospheric chemistry satellite observing capabilities, the results from these model applications will be discussed in the context of how the new satellite observations could help constrain and reduce uncertainties in the models.

Starch and starch hydrolysates are favorable carbon sources for bifidobacteria in the human gut.

PubMed

Liu, Songling; Ren, Fazheng; Zhao, Liang; Jiang, Lu; Hao, Yanling; Jin, Junhua; Zhang, Ming; Guo, Huiyuan; Lei, Xingen; Sun, Erna; Liu, Hongna

2015-03-01

Bifidobacteria are key commensals in human gut, and their abundance is associated with the health of their hosts. Although they are dominant in infant gut, their number becomes lower in adult gut. The changes of the diet are considered to be main reason for this difference. Large amounts of whole-genomic sequence data of bifidobacteria make it possible to elucidate the genetic interpretation of their adaptation to the nutrient environment. Among the nutrients in human gut, starch is a highly fermentable substrate and can exert beneficial effects by increasing bifidobacteria and/or being fermented to short chain fatty acids. In order to determine the potential substrate preference of bifidobacteria, we compared the glycoside hydrolase (GH) profiles of a pooled-bifidobacterial genome (PBG) with a representative microbiome (RM) of the human gut. In bifidobacterial genomes, only 15% of GHs contained signal peptides, suggesting their weakness in utilization of complex carbohydrate, such as plant cell wall polysaccharides. However, compared with other intestinal bacteria, bifidobacteiral genomes encoded more GH genes for degrading starch and starch hydrolysates, indicating that they have genetic advantages in utilizing these substrates. Bifidobacterium longum subsp. longum BBMN68 isolated from centenarian's faeces was used as a model strain to further investigate the carbohydrate utilization. The pathway for degrading starch and starch hydrolysates was the only complete pathway for complex carbohydrates in human gut. It is noteworthy that all of the GH genes for degrading starch and starch hydrolysates in the BBMN68 genome were conserved in all studied bifidobacterial strains. The in silico analyses of BBMN68 were further confirmed by growth experiments, proteomic and real-time quantitative PCR (RT-PCR) analyses. Our results demonstrated that starch and starch hydrolysates were the most universal and favorable carbon sources for bifidobacteria. The low amount of these carbon sources in adult intestine was speculated to contribute to the low relative abundance of bifidobacteria.

Reimbursement of biosimilars in Poland: is there a link to health technology assessment?

PubMed

Neumann, Dominika; Jabłecka, Anna

2016-12-01

Due to their complex structures, biosimilars are not generics. The differences between them are considered during market authorization processes but remain unclear during reimbursement decision-making. We analyzed the reimbursement of biopharmaceuticals in Poland with an emphasis on biosimilars and compared the health technology assessment (HTA) process with that defined in other countries. Recommendations provided by the Polish HTA organization and those in other countries were included as source documents. The period of interest covered January 2012 to December 2014. The reimbursement process for biosimilars in Poland is the same as that for generics. In contrast to other countries, a HTA is not involved in decision-making in Poland. The short administrative procedure for reimbursement of biosimilars in Poland accelerates the decision-making process; therefore, therapies can be made available to patients more quickly. However, this procedure can potentially lead to underestimation of aspects concerning the effectiveness and safety of biosimilars.

Concentrator hot-spot testing, phase 1

NASA Technical Reports Server (NTRS)

Gonzalez, C. C.

1987-01-01

Results of a study to determine the hot-spot susceptibility of concentrator cells, to provide a hot-spot qualification test for concentrator modules, and to provide guidelines for reducing hot-spot susceptibility are presented. Hot-spot heating occurs in a photovoltaic module when the short-circuit current of a cell is lower than the string operating current forcing the cell into reverse bias with a concurrent power dissipation. Although the basis for the concentrator module hot-spot qualification test is the test developed for flat-plate modules, issues, such as providing cell illumination, introduce additional complexities into the testing procedure. The same general guidelines apply for protecting concentrator modules from hot-spot stressing as apply to flat-plate modules. Therefore, recommendations are made on the number of bypass diodes required per given number of series cells per module or source circuit. In addition, a new method for determining the cell temperature in the laboratory or in the field is discussed.

Detection of forest decline in Monchegorsk area

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hagner, O.; Rigina, O.

1998-01-01

Forests on the Kola Peninsula in Northern Russia are growing close to the limits of the northern tree line. They are subjected to both natural (low temperatures and a short period of biochemical activity) and anthropogenic stress factors. The metallurgic industry complex Severo-nickel close to the city of Monchegorsk in the central Russian Kola Peninsula is one of the major sources of sulfur dioxide (SO{sub 2}), nickel, and copper emissions in the region. The environmental impact on the surrounding area is dramatic. In this study multispectral changes observed in Landsat-MSS satellite image data from 1978, 1986, and 1992 are usedmore » to evaluate the relevance of a mathematical model of SO{sub 2} concentration in ambient air as a component for assessment of forest decline. The multispectral changes detected were found to have a statistically significant correspondence to the modeled (SO{sub 2}) concentration levels in ambient air.« less

Novel antibiofilm chemotherapies target nitrogen from glutamate and glutamine.

PubMed

Hassanov, Tal; Karunker, Iris; Steinberg, Nitai; Erez, Ayelet; Kolodkin-Gal, Ilana

2018-05-08

Bacteria in nature often reside in differentiated communities termed biofilms, which are an active interphase between uni-cellular and multicellular life states for bacteria. Here we demonstrate that the development of B. subtilis biofilms is dependent on the use of glutamine or glutamate as a nitrogen source. We show a differential metabolic requirement within the biofilm; while glutamine is necessary for the dividing cells at the edges, the inner cell mass utilizes lactic acid. Our results indicate that biofilm cells preserve a short-term memory of glutamate metabolism. Finally, we establish that drugs that target glutamine and glutamate utilization restrict biofilm development. Overall, our work reveals a spatial regulation of nitrogen and carbon metabolism within the biofilm, which contributes to the fitness of bacterial complex communities. This acquired metabolic division of labor within biofilm can serve as a target for novel anti-biofilm chemotherapies.

Droplet characteristic measurement in Fourier interferometry imaging and behavior at the rainbow angle.

PubMed

Briard, Paul; Saengkaew, Sawitree; Wu, Xuecheng; Meunier-Guttin-Cluzel, Siegfried; Chen, Linghong; Cen, Kefa; Gréhan, Gérard

2013-01-01

This paper presents the possibility of measuring the three-dimensional (3D) relative locations and diameters of a set of spherical particles and discusses the behavior of the light recorded around the rainbow angle, an essential step toward refractive index measurements. When a set of particles is illuminated by a pulsed incident wave, the particles act as spherical light wave sources. When the pulse duration is short enough to fix the particle location (typically about 10 ns), interference fringes between these different spherical waves can be recorded. The Fourier transform of the fringes divides the complex fringe systems into a series of spots, with each spot characterizing the interference between a pair of particles. The analyses of these spots (in position and shape) potentially allow the measurement of particle characteristics (3D relative position, particle diameter, and particle refractive index value).

A data mart for operations analysis.

PubMed

Isken, M W; Littig, S J; West, M

2001-01-01

In this article we describe the evolution and architecture of a data mart developed to address the modeling and analysis needs of healthcare operations analysts. More specifically, the data mart is used in projects relating to demand analysis, forecasting, capacity planning, and service system design for a healthcare system consisting of a large tertiary care hospital and a smaller community hospital. The primary focus of the mart is on the detailed movement of inpatients through each hospital, although most component data tables include outpatient information such as emergency center visits, surgical cases, cardiac catheterization cases, and short-stay visits. We show that the data mart goes well beyond consolidating data from different sources by including a number of complex, precalculated fields, data structures, and function libraries that are specific to the needs of operations analysts. We discuss several outstanding and challenging design issues that should be of interest to the data warehouse vendor community.

Vaccination and the TAP-independent antigen processing pathways.

PubMed

López, Daniel; Lorente, Elena; Barriga, Alejandro; Johnstone, Carolina; Mir, Carmen

2013-09-01

The cytotoxic CD8(+) T lymphocyte-mediated cellular response is important for the elimination of virus-infected cells and requires the prior recognition of short viral peptide antigens previously translocated to the endoplasmic reticulum by the transporter associated with antigen processing (TAP). However, individuals with nonfunctional TAP complexes or infected cells with TAP molecules blocked by specific viral proteins, such as the cowpoxvirus, a component of the first source of early empirical vaccination against smallpox, are still able to present several HLA class I ligands generated by the TAP-independent antigen processing pathways to specific cytotoxic CD8(+) T lymphocytes. Currently, bioterrorism and emerging infectious diseases have renewed interest in poxviruses. Recent works that have identified HLA class I ligands and epitopes in virus-infected TAP-deficient cells have implications for the study of both the effectiveness of early empirical vaccination and the analysis of HLA class I antigen processing in TAP-deficient subjects.

Newborn human brain identifies repeated auditory feature conjunctions of low sequential probability.

PubMed

Ruusuvirta, Timo; Huotilainen, Minna; Fellman, Vineta; Näätänen, Risto

2004-11-01

Natural environments are usually composed of multiple sources for sounds. The sounds might physically differ from one another only as feature conjunctions, and several of them might occur repeatedly in the short term. Nevertheless, the detection of rare sounds requires the identification of the repeated ones. Adults have some limited ability to effortlessly identify repeated sounds in such acoustically complex environments, but the developmental onset of this finite ability is unknown. Sleeping newborn infants were presented with a repeated tone carrying six frequent (P = 0.15 each) and six rare (P approximately 0.017 each) conjunctions of its frequency, intensity and duration. Event-related potentials recorded from the infants' scalp were found to shift in amplitude towards positive polarity selectively in response to rare conjunctions. This finding suggests that humans are relatively hard-wired to preattentively identify repeated auditory feature conjunctions even when such conjunctions occur rarely among other similar ones.

Sol-gel synthesis, phase composition, morphological and structural characterization of Ca10(PO4)6(OH)2: XRD, FTIR, SEM, 3D SEM and solid-state NMR studies

NASA Astrophysics Data System (ADS)

Kareiva, Simonas; Klimavicius, Vytautas; Momot, Aleksandr; Kausteklis, Jonas; Prichodko, Aleksandra; Dagys, Laurynas; Ivanauskas, Feliksas; Sakirzanovas, Simas; Balevicius, Vytautas; Kareiva, Aivaras

2016-09-01

Aqueous sol-gel chemistry route based on ammonium-hydrogen phosphate as the phosphorus precursor, calcium acetate monohydrate as source of calcium ions, and 1,2-ethylendiaminetetraacetic acid (EDTA), or 1,2-diaminocyclohexanetetracetic acid (DCTA), or tartaric acid (TA), or ethylene glycol (EG), or glycerol (GL) as complexing agents have been used to prepare calcium hydroxyapatite (Ca10(PO4)6(OH)2, CHAp). The phase transformations, composition, and structural changes in the polycrystalline samples were studied by infrared spectroscopy (FTIR), X-ray powder diffraction analysis (XRD), and scanning electron microscopy (SEM). The local short-range (nano- and mezo-) scale effects in CHAp were studied using solid-state NMR spectroscopy. The spatial 3D data from the SEM images of CHAp samples obtained by TA, EG and GL sol-gel routes were recovered for the first time to our knowledge.

High peak power solid-state laser for micromachining of hard materials

NASA Astrophysics Data System (ADS)

Herbst, Ludolf; Quitter, John P.; Ray, Gregory M.; Kuntze, Thomas; Wiessner, Alexander O.; Govorkov, Sergei V.; Heglin, Mike

2003-06-01

Laser micromachining has become a key enabling technology in the ever-continuing trend of miniaturization in microelectronics, micro-optics, and micromechanics. New applications have become commercially viable due to the emergence of innovative laser sources, such as diode pumped solid-state lasers (DPSSL), and the progress in processing technology. Examples of industrial applications are laser-drilled micro-injection nozzles for highly efficient automobile engines, or manufacturing of complex spinnerets for production of synthetic fibers. The unique advantages of laser-based techniques stem from their ability to produce high aspect ratio holes, while yielding low heat affected zones with exceptional surface quality, roundness and taper tolerances. Additionally, the ability to drill blind holes and slots in very hard materials such as diamond, silicon, sapphire, ceramics and steel is of great interest for many applications in microelectronics, semiconductor and automotive industry. This kind of high quality, high aspect ratio micromachining requires high peak power and short pulse durations.

AANA Journal Course: update for nurse anesthetists. Arrhythmia management devices and electromagnetic interference.

PubMed

Mattingly, Emily

2005-04-01

The technological complexity of implantable arrhythmia management devices, specifically pacemakers and defibrillators, has increased dramatically since their introduction only a few decades ago. Patients with such devices are encountered much more frequently in hospitals and surgery centers, yet anesthesia provider knowledge of safe and proper management is often incomplete. Anesthesia textbooks and references may provide only short paragraphs on arrhythmia management devices that do not address important perioperative management strategies for this ever-growing patient population. It is no longer satisfactory to simply place a magnet over an implanted device during surgery and assume that this action protects the patient from harm due to electromagnetic interference from inappropriate device function. This AANA Journal course serves as a concise review of basic device function, the sources and effects of electromagnetic interference in the operative setting, and patient management recommendations from current literature.

Comparing Parental Well-Being and Its Determinants Across Three Different Genetic Disorders Causing Intellectual Disability.

PubMed

Mori, Yuka; Downs, Jenny; Wong, Kingsley; Heyworth, Jane; Leonard, Helen

2018-05-01

Using the Short Form 12 Health Survey this cross-sectional study examined parental well-being in caregivers of children with one of three genetic disorders associated with intellectual disability; Down syndrome, Rett syndrome and the CDKL5 disorder. Data were sourced from the Western Australian Down Syndrome (n = 291), Australian Rett Syndrome (n = 187) and International CDKL5 Disorder (n = 168) Databases. Among 596 mothers (median age, years 43.7; 24.6-72.2), emotional well-being was poorer than general female populations across age groups. Multivariate linear regression identified the poorest well-being in parents of children with the CDKL5 disorder, a rare but severe and complex encephalopathy, and negative associations with increased clinical severity irrespective of diagnosis. These findings are important for those providing healthcare and social services for these populations.

Measurements and models of CO2 and CH4 Flux in the Baltimore/Washington area.

NASA Astrophysics Data System (ADS)

Dickerson, R. R.; Ren, X.; Salawitch, R. J.; Ahn, D.; Karion, A.; Shepson, P. B.; Whetstone, J. R.; Martin, C.

2017-12-01

Direct measurements of concentrations of pollutants such as CO2 and CH4 can be combined with wind fields to determine the flux of these species and to evaluate emissions inventories or models. The mass balance approach, assumng linear flow into and out of a volume set over a city, works best where wind fields are simplest. Over typical American east coast cities, upwind sources and complex circulation (e.g., the sea breeze) complicate such analyses. We will present findings from a coupled measurement and modeling project involving a network of surface-based tower measurements, aircraft observations, and remote sensing that constrain model calculations. Summer and winter scenarios are contrasted, and results help evaluate the emissions of short-lived pollutants. Determinations are compared to several emissions inventories and are being used to help States evaluate evaluate plans for pollution control.

A short introduction to the status and motivation for reversed field pinch and compact toroid research

NASA Astrophysics Data System (ADS)

Dreicer, H.

1987-09-01

Potential commercial fusion power systems must be acceptable from a safety and environmental standpoint. They must also promise to be competitive with other sources of energy (i.e., fossil, fission, etc.) when considered from the standpoint of the cost of electricity (COE) and the unit direct cost (UDC) in dollars/kWe. These costs are affected by a host of factors including recirculating power, plant availability, construction time, capital cost, etc., and are influenced by technological complexity. In an attempt to meet these requirements, the emphasis of fusion research in the United States has been moving toward smaller, lower-cost systems. There is increased interest in higher beta tokamaks and stellarators, and in compact alternate concepts such as the Reversed Field Pinch (RFP) and the Compact Toroids (CTs) which are, in part, the subject of this paper.

Development of the Long Pulse Negative Ion Source for ITER

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hemsworth, R.S.; Svensson, L.; Esch, H.P.L. de

2005-04-06

A model of the ion source designed for the neutral beam injectors of the International Thermonuclear Experimental Reactor (ITER), the KAMABOKO III ion source, is being tested on the MANTIS test stand at the DRFC Cadarache in collaboration with JAERI, Japan, who designed and supplied the ion source. The ion source is attached to a 3 grid 30 keV accelerator (also supplied by JAERI) and the accelerated negative ion current is determined from the energy deposited on a calorimeter located 1.6 m from the source.During experiments on MANTIS three adverse effects of long pulse operation were found: The negative ionmore » current to the calorimeter is {approx_equal}50% of that obtained from short pulse operation Increasing the plasma grid (PG) temperature results in {<=}40% enhancement in negative ion yield, substantially below that reported for short pulse operation, {>=}100%. The caesium 'consumption' is up to 1500 times that expected.Results presented here indicate that each of these is, at least partially, explained by thermal effects. Additionally presented are the results of a detailed characterisation of the source, which enable the most efficient mode of operation to be identified.« less

Short-wavelength free-electron laser sources and science: a review.

PubMed

Seddon, E A; Clarke, J A; Dunning, D J; Masciovecchio, C; Milne, C J; Parmigiani, F; Rugg, D; Spence, J C H; Thompson, N R; Ueda, K; Vinko, S M; Wark, J S; Wurth, W

2017-11-01

This review is focused on free-electron lasers (FELs) in the hard to soft x-ray regime. The aim is to provide newcomers to the area with insights into: the basic physics of FELs, the qualities of the radiation they produce, the challenges of transmitting that radiation to end users and the diversity of current scientific applications. Initial consideration is given to FEL theory in order to provide the foundation for discussion of FEL output properties and the technical challenges of short-wavelength FELs. This is followed by an overview of existing x-ray FEL facilities, future facilities and FEL frontiers. To provide a context for information in the above sections, a detailed comparison of the photon pulse characteristics of FEL sources with those of other sources of high brightness x-rays is made. A brief summary of FEL beamline design and photon diagnostics then precedes an overview of FEL scientific applications. Recent highlights are covered in sections on structural biology, atomic and molecular physics, photochemistry, non-linear spectroscopy, shock physics, solid density plasmas. A short industrial perspective is also included to emphasise potential in this area.

The laminar and temporal structure of stimulus information in the phase of field potentials of auditory cortex.

PubMed

Szymanski, Francois D; Rabinowitz, Neil C; Magri, Cesare; Panzeri, Stefano; Schnupp, Jan W H

2011-11-02

Recent studies have shown that the phase of low-frequency local field potentials (LFPs) in sensory cortices carries a significant amount of information about complex naturalistic stimuli, yet the laminar circuit mechanisms and the aspects of stimulus dynamics responsible for generating this phase information remain essentially unknown. Here we investigated these issues by means of an information theoretic analysis of LFPs and current source densities (CSDs) recorded with laminar multi-electrode arrays in the primary auditory area of anesthetized rats during complex acoustic stimulation (music and broadband 1/f stimuli). We found that most LFP phase information originated from discrete "CSD events" consisting of granular-superficial layer dipoles of short duration and large amplitude, which we hypothesize to be triggered by transient thalamocortical activation. These CSD events occurred at rates of 2-4 Hz during both stimulation with complex sounds and silence. During stimulation with complex sounds, these events reliably reset the LFP phases at specific times during the stimulation history. These facts suggest that the informativeness of LFP phase in rat auditory cortex is the result of transient, large-amplitude events, of the "evoked" or "driving" type, reflecting strong depolarization in thalamo-recipient layers of cortex. Finally, the CSD events were characterized by a small number of discrete types of infragranular activation. The extent to which infragranular regions were activated was stimulus dependent. These patterns of infragranular activations may reflect a categorical evaluation of stimulus episodes by the local circuit to determine whether to pass on stimulus information through the output layers.

Exact distribution of a pattern in a set of random sequences generated by a Markov source: applications to biological data

PubMed Central

2010-01-01

Background In bioinformatics it is common to search for a pattern of interest in a potentially large set of rather short sequences (upstream gene regions, proteins, exons, etc.). Although many methodological approaches allow practitioners to compute the distribution of a pattern count in a random sequence generated by a Markov source, no specific developments have taken into account the counting of occurrences in a set of independent sequences. We aim to address this problem by deriving efficient approaches and algorithms to perform these computations both for low and high complexity patterns in the framework of homogeneous or heterogeneous Markov models. Results The latest advances in the field allowed us to use a technique of optimal Markov chain embedding based on deterministic finite automata to introduce three innovative algorithms. Algorithm 1 is the only one able to deal with heterogeneous models. It also permits to avoid any product of convolution of the pattern distribution in individual sequences. When working with homogeneous models, Algorithm 2 yields a dramatic reduction in the complexity by taking advantage of previous computations to obtain moment generating functions efficiently. In the particular case of low or moderate complexity patterns, Algorithm 3 exploits power computation and binary decomposition to further reduce the time complexity to a logarithmic scale. All these algorithms and their relative interest in comparison with existing ones were then tested and discussed on a toy-example and three biological data sets: structural patterns in protein loop structures, PROSITE signatures in a bacterial proteome, and transcription factors in upstream gene regions. On these data sets, we also compared our exact approaches to the tempting approximation that consists in concatenating the sequences in the data set into a single sequence. Conclusions Our algorithms prove to be effective and able to handle real data sets with multiple sequences, as well as biological patterns of interest, even when the latter display a high complexity (PROSITE signatures for example). In addition, these exact algorithms allow us to avoid the edge effect observed under the single sequence approximation, which leads to erroneous results, especially when the marginal distribution of the model displays a slow convergence toward the stationary distribution. We end up with a discussion on our method and on its potential improvements. PMID:20205909

Exact distribution of a pattern in a set of random sequences generated by a Markov source: applications to biological data.

PubMed

Nuel, Gregory; Regad, Leslie; Martin, Juliette; Camproux, Anne-Claude

2010-01-26

In bioinformatics it is common to search for a pattern of interest in a potentially large set of rather short sequences (upstream gene regions, proteins, exons, etc.). Although many methodological approaches allow practitioners to compute the distribution of a pattern count in a random sequence generated by a Markov source, no specific developments have taken into account the counting of occurrences in a set of independent sequences. We aim to address this problem by deriving efficient approaches and algorithms to perform these computations both for low and high complexity patterns in the framework of homogeneous or heterogeneous Markov models. The latest advances in the field allowed us to use a technique of optimal Markov chain embedding based on deterministic finite automata to introduce three innovative algorithms. Algorithm 1 is the only one able to deal with heterogeneous models. It also permits to avoid any product of convolution of the pattern distribution in individual sequences. When working with homogeneous models, Algorithm 2 yields a dramatic reduction in the complexity by taking advantage of previous computations to obtain moment generating functions efficiently. In the particular case of low or moderate complexity patterns, Algorithm 3 exploits power computation and binary decomposition to further reduce the time complexity to a logarithmic scale. All these algorithms and their relative interest in comparison with existing ones were then tested and discussed on a toy-example and three biological data sets: structural patterns in protein loop structures, PROSITE signatures in a bacterial proteome, and transcription factors in upstream gene regions. On these data sets, we also compared our exact approaches to the tempting approximation that consists in concatenating the sequences in the data set into a single sequence. Our algorithms prove to be effective and able to handle real data sets with multiple sequences, as well as biological patterns of interest, even when the latter display a high complexity (PROSITE signatures for example). In addition, these exact algorithms allow us to avoid the edge effect observed under the single sequence approximation, which leads to erroneous results, especially when the marginal distribution of the model displays a slow convergence toward the stationary distribution. We end up with a discussion on our method and on its potential improvements.

Genomic dark matter: the reliability of short read mapping illustrated by the genome mappability score.

PubMed

Lee, Hayan; Schatz, Michael C

2012-08-15

Genome resequencing and short read mapping are two of the primary tools of genomics and are used for many important applications. The current state-of-the-art in mapping uses the quality values and mapping quality scores to evaluate the reliability of the mapping. These attributes, however, are assigned to individual reads and do not directly measure the problematic repeats across the genome. Here, we present the Genome Mappability Score (GMS) as a novel measure of the complexity of resequencing a genome. The GMS is a weighted probability that any read could be unambiguously mapped to a given position and thus measures the overall composition of the genome itself. We have developed the Genome Mappability Analyzer to compute the GMS of every position in a genome. It leverages the parallelism of cloud computing to analyze large genomes, and enabled us to identify the 5-14% of the human, mouse, fly and yeast genomes that are difficult to analyze with short reads. We examined the accuracy of the widely used BWA/SAMtools polymorphism discovery pipeline in the context of the GMS, and found discovery errors are dominated by false negatives, especially in regions with poor GMS. These errors are fundamental to the mapping process and cannot be overcome by increasing coverage. As such, the GMS should be considered in every resequencing project to pinpoint the 'dark matter' of the genome, including of known clinically relevant variations in these regions. The source code and profiles of several model organisms are available at http://gma-bio.sourceforge.net

Investigation of natural gas plume dispersion using mobile observations and large eddy simulations

NASA Astrophysics Data System (ADS)

Caulton, Dana R.; Li, Qi; Golston, Levi; Pan, Da; Bou-Zeid, Elie; Fitts, Jeff; Lane, Haley; Lu, Jessica; Zondlo, Mark A.

2016-04-01

Recent work suggests the distribution of methane emissions from fracking operations is skewed with a small percentage of emitters contributing a large proportion of the total emissions. These sites are known as 'super-emitters.' The Marcellus shale, the most productive natural gas shale field in the United States, has received less intense focus for well-level emissions and is here used as a test site for targeted analysis between current standard trace-gas advection practices and possible improvements via advanced modeling techniques. The Marcellus shale is topographically complex, making traditional techniques difficult to implement and evaluate. For many ground based mobile studies, the inverse Gaussian plume method (IGM) is used to produce emission rates. This method is best applied to well-mixed plumes from strong point sources and may not currently be well-suited for use with disperse weak sources, short-time frame measurements or data collected in complex terrain. To assess the quality of IGM results and to improve source-strength estimations, a robust study that combines observational data with a hierarchy of models of increasing complexity will be presented. The field test sites were sampled with multiple passes using a mobile lab as well as a stationary tower. This mobile lab includes a Garmin GPS unit, Vaisala weather station (WTX520), LICOR 7700 CH4 open path sensor and LICOR 7500 CO2/H2O open path sensor. The sampling tower was constructed consisting of a Metek uSonic-3 Class A sonic anemometer, and an additional LICOR 7700 and 7500. Data were recorded for at least one hour at these sites. The modeling will focus on large eddy simulations (LES) of the wind and CH4 concentration fields for these test sites. The LES model used 2 m horizontal and 1 m vertical resolution and was integrated in time for 45 min for various test sites under stable, neutral and unstable conditions. It is here considered as the reference to which various IGM approaches can be compared. Preliminary results show large variability in this region which, under the observed meteorological conditions, is determined to be a factor of 2 for IGM results. While this level of uncertainty appears adequate to identify super-emitters under most circumstances, there is large uncertainty on individual measurements. LES can provide insights into the expected variability and its sources and into sampling patterns that will allow more robust error estimates.

Economic potential of short-rotation woody crops on agricultural land for pulp fiber production in the United States.

Treesearch

Ralph J. Alig; Darius M. Adams; Bruce A. McCarl; Peter J. Ince

2000-01-01

A model of the U.S. forestry and agricultural sectors is used to simulate the consequences of growing short-rotation woody crops on agricultural lands as a fiber source for pulp and paper production. Hybrid poplar, a short-rotation woody crop, annually produces 4 to 7 dry tons per acre of hardwood pulpwood over a 6- to 10-year rotation. When harvested, the material...

Sensitivity of two dispersion models (AERMOD and ISCST3) to input parameters for a rural ground-level area source.

PubMed

Faulkner, William B; Shaw, Bryan W; Grosch, Tom

2008-10-01

As of December 2006, the American Meteorological Society/U.S. Environmental Protection Agency (EPA) Regulatory Model with Plume Rise Model Enhancements (AERMOD-PRIME; hereafter AERMOD) replaced the Industrial Source Complex Short Term Version 3 (ISCST3) as the EPA-preferred regulatory model. The change from ISCST3 to AERMOD will affect Prevention of Significant Deterioration (PSD) increment consumption as well as permit compliance in states where regulatory agencies limit property line concentrations using modeling analysis. Because of differences in model formulation and the treatment of terrain features, one cannot predict a priori whether ISCST3 or AERMOD will predict higher or lower pollutant concentrations downwind of a source. The objectives of this paper were to determine the sensitivity of AERMOD to various inputs and compare the highest downwind concentrations from a ground-level area source (GLAS) predicted by AERMOD to those predicted by ISCST3. Concentrations predicted using ISCST3 were sensitive to changes in wind speed, temperature, solar radiation (as it affects stability class), and mixing heights below 160 m. Surface roughness also affected downwind concentrations predicted by ISCST3. AERMOD was sensitive to changes in albedo, surface roughness, wind speed, temperature, and cloud cover. Bowen ratio did not affect the results from AERMOD. These results demonstrate AERMOD's sensitivity to small changes in wind speed and surface roughness. When AERMOD is used to determine property line concentrations, small changes in these variables may affect the distance within which concentration limits are exceeded by several hundred meters.

Adjoint tomography of Europe

NASA Astrophysics Data System (ADS)

Zhu, H.; Bozdag, E.; Peter, D. B.; Tromp, J.

2010-12-01

We use spectral-element and adjoint methods to image crustal and upper mantle heterogeneity in Europe. The study area involves the convergent boundaries of the Eurasian, African and Arabian plates and the divergent boundary between the Eurasian and North American plates, making the tectonic structure of this region complex. Our goal is to iteratively fit observed seismograms and improve crustal and upper mantle images by taking advantage of 3D forward and inverse modeling techniques. We use data from 200 earthquakes with magnitudes between 5 and 6 recorded by 262 stations provided by ORFEUS. Crustal model Crust2.0 combined with mantle model S362ANI comprise the initial 3D model. Before the iterative adjoint inversion, we determine earthquake source parameters in the initial 3D model by using 3D Green functions and their Fréchet derivatives with respect to the source parameters (i.e., centroid moment tensor and location). The updated catalog is used in the subsequent structural inversion. Since we concentrate on upper mantle structures which involve anisotropy, transversely isotropic (frequency-dependent) traveltime sensitivity kernels are used in the iterative inversion. Taking advantage of the adjoint method, we use as many measurements as can obtain based on comparisons between observed and synthetic seismograms. FLEXWIN (Maggi et al., 2009) is used to automatically select measurement windows which are analyzed based on a multitaper technique. The bandpass ranges from 15 second to 150 second. Long-period surface waves and short-period body waves are combined in source relocations and structural inversions. A statistical assessments of traveltime anomalies and logarithmic waveform differences is used to characterize the inverted sources and structure.

An Investigation of the Sources of Earth-directed Solar Wind during Carrington Rotation 2053

NASA Astrophysics Data System (ADS)

Fazakerley, A. N.; Harra, L. K.; van Driel-Gesztelyi, L.

2016-06-01

In this work we analyze multiple sources of solar wind through a full Carrington Rotation (CR 2053) by analyzing the solar data through spectroscopic observations of the plasma upflow regions and the in situ data of the wind itself. Following earlier authors, we link solar and in situ observations by a combination of ballistic backmapping and potential-field source-surface modeling. We find three sources of fast solar wind that are low-latitude coronal holes. The coronal holes do not produce a steady fast wind, but rather a wind with rapid fluctuations. The coronal spectroscopic data from Hinode’s Extreme Ultraviolet Imaging Spectrometer show a mixture of upflow and downflow regions highlighting the complexity of the coronal hole, with the upflows being dominant. There is a mix of open and multi-scale closed magnetic fields in this region whose (interchange) reconnections are consistent with the up- and downflows they generate being viewed through an optically thin corona, and with the strahl directions and freeze-in temperatures found in in situ data. At the boundary of slow and fast wind streams there are three short periods of enhanced-velocity solar wind, which we term intermediate based on their in situ characteristics. These are related to active regions that are located beside coronal holes. The active regions have different magnetic configurations, from bipolar through tripolar to quadrupolar, and we discuss the mechanisms to produce this intermediate wind, and the important role that the open field of coronal holes adjacent to closed-field active regions plays in the process.

Exploring uncertainty in the Earth Sciences - the potential field perspective

NASA Astrophysics Data System (ADS)

Saltus, R. W.; Blakely, R. J.

2013-12-01

Interpretation of gravity and magnetic anomalies is mathematically non-unique because multiple theoretical solutions are possible. The mathematical label of 'non-uniqueness' can lead to the erroneous impression that no single interpretation is better in a geologic sense than any other. The purpose of this talk is to present a practical perspective on the theoretical non-uniqueness of potential field interpretation in geology. There are multiple ways to approach and constrain potential field studies to produce significant, robust, and definitive results. For example, a smooth, bell-shaped gravity profile, in theory, could be caused by an infinite set of physical density bodies, ranging from a deep, compact, circular source to a shallow, smoothly varying, inverted bell-shaped source. In practice, however, we can use independent geologic or geophysical information to limit the range of possible source densities and rule out many of the theoretical solutions. We can further reduce the theoretical uncertainty by careful attention to subtle anomaly details. For example, short-wavelength anomalies are a well-known and theoretically established characteristic of shallow geologic sources. The 'non-uniqueness' of potential field studies is closely related to the more general topic of scientific uncertainty in the Earth sciences and beyond. Nearly all results in the Earth sciences are subject to significant uncertainty because problems are generally addressed with incomplete and imprecise data. The increasing need to combine results from multiple disciplines into integrated solutions in order to address complex global issues requires special attention to the appreciation and communication of uncertainty in geologic interpretation.

An intercomparison of models used to simulate the short-range atmospheric dispersion of agricultural ammonia emissions

EPA Science Inventory

Ammonia emitted into the atmosphere from agricultural sources can have an impact on nearby sensitive ecosystems either through elevated ambient concentrations or dry/wet deposition to vegetation and soil surfaces. Short-range atmospheric dispersion models are often used to assess...

Differentiation and magmatic activity in Vesta evidenced by 26Al-26Mg dating in eucrites and diogenites

NASA Astrophysics Data System (ADS)

Hublet, G.; Debaille, V.; Wimpenny, J.; Yin, Q.-Z.

2017-12-01

The 26Al-26Mg short-lived chronometer has been widely used for dating ancient objects in studying the early Solar System. Here, we use this chronometer to investigate and refine the geological history of the asteroid 4-Vesta. Ten meteorites widely believed to come from Vesta (4 basaltic eucrites, 3 cumulate eucrites and 3 diogenites) and the unique achondrite Asuka 881394 were selected for this study. All samples were analyzed for their δ26Mg∗ and 27Al/24Mg ratios, in order to construct both whole rock and model whole rock isochrons. Mineral separation was performed on 8 of the HED's in order to obtain internal isochrons. While whole rock Al-Mg analyses of HED's plot on a regression that could be interpreted as a vestan planetary isochron, internal mineral isochrons indicate a more complex history. Crystallization ages obtained from internal 26Al-26Mg systematic in basaltic eucrites show that Vesta's upper crust was formed during a short period of magmatic activity at 2.66-0.58+1.39 million years (Ma) after Calcium-Aluminum inclusions (after CAI). We also suggest that impact metamorphism and subsequent age resetting could have taken place at the surface of Vesta while 26Al was still extant. Cumulate eucrites crystallized progressively from 5.48-0.60+1.56 to >7.25 Ma after CAI. Model ages obtained for both basaltic and cumulate eucrites are similar and suggest that the timing of differentiation of a common eucrite source from a chondritic body can be modeled at 2.88-0.12+0.14 Ma after CAI, i.e. contemporaneously from the onset of the basaltic eucritic crust. Based on their cumulate texture, we suggest cumulate eucrites were likely formed deeper in the crust of Vesta. Diogenites have a more complicated history and their 26Al-26Mg systematics show that they likely formed after the complete decay of 26Al and thus are younger than eucrites. This refined chronology for eucrites and diogenites is consistent with a short magma ocean stage on 4-Vesta from which the basaltic eucrites rapidly crystallized. In order to explain the younger age and the complex history of diogenites, we postulate that a second episode of magmatism was possibly triggered by a mantle overturn. We bring a refined chronology of the geological history of Vesta that shows that the asteroid has known a more-complex differentiation than previously thought.

ACCIS Guide to United Nations Information Sources on the Environment.

ERIC Educational Resources Information Center

United Nations, New York, NY.

This is a guide to the organizational units of the United Nations (UN) system that work on environmental issues. Section 1 provides short descriptions of sources of information on the environment from 34 organizations of the UN system. A contact address is given for each organization. Section 2 groups sources of information into 11 subject…

Galactic water vapor emission: further observations of variability.

PubMed

Knowles, S H; Mayer, C H; Sullivan, W T; Cheung, A C

1969-10-10

Recent observations of the 1.35-centimeter line emission of water vapor from galactic sources show short-term variability in the spectra of several sources. Two additional sources, Cygnus 1 and NGC 6334N, have been observed, and the spectra of W49 and VY Canis Majoris were measured over a wider range of radial velocity.

High power neutron production targets

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wender, S.

1996-06-01

The author describes issues of concern in the design of targets and associated systems for high power neutron production facilities. The facilities include uses for neutron scattering, accelerator driven transmutation, accelerator production of tritium, short pulse spallation sources, and long pulse spallation sources. Each of these applications requires a source with different design needs and consequently different implementation in practise.

Simple and Complex Memory Spans and Their Relation to Fluid Abilities: Evidence from List-Length Effects

ERIC Educational Resources Information Center

Unsworth, Nash; Engle, Randall W.

2006-01-01

Complex (working memory) span tasks have generally shown larger and more consistent correlations with higher-order cognition than have simple (or short-term memory) span tasks. The relation between verbal complex and simple verbal span tasks to fluid abilities as a function of list-length was examined. The results suggest that the simple…

Italian Case Studies Modelling Complex Earthquake Sources In PSHA

NASA Astrophysics Data System (ADS)

Gee, Robin; Peruzza, Laura; Pagani, Marco

2017-04-01

This study presents two examples of modelling complex seismic sources in Italy, done in the framework of regional probabilistic seismic hazard assessment (PSHA). The first case study is for an area centred around Collalto Stoccaggio, a natural gas storage facility in Northern Italy, located within a system of potentially seismogenic thrust faults in the Venetian Plain. The storage exploits a depleted natural gas reservoir located within an actively growing anticline, which is likely driven by the Montello Fault, the underlying blind thrust. This fault has been well identified by microseismic activity (M<2) detected by a local seismometric network installed in 2012 (http://rete-collalto.crs.inogs.it/). At this time, no correlation can be identified between the gas storage activity and local seismicity, so we proceed with a PSHA that considers only natural seismicity, where the rates of earthquakes are assumed to be time-independent. The source model consists of faults and distributed seismicity to consider earthquakes that cannot be associated to specific structures. All potentially active faults within 50 km of the site are considered, and are modelled as 3D listric surfaces, consistent with the proposed geometry of the Montello Fault. Slip rates are constrained using available geological, geophysical and seismological information. We explore the sensitivity of the hazard results to various parameters affected by epistemic uncertainty, such as ground motions prediction equations with different rupture-to-site distance metrics, fault geometry, and maximum magnitude. The second case is an innovative study, where we perform aftershock probabilistic seismic hazard assessment (APSHA) in Central Italy, following the Amatrice M6.1 earthquake of August 24th, 2016 (298 casualties) and the subsequent earthquakes of Oct 26th and 30th (M6.1 and M6.6 respectively, no deaths). The aftershock hazard is modelled using a fault source with complex geometry, based on literature data and field evidence associated with the August mainshock. Earthquake activity rates during the very first weeks after the deadly earthquake were used to calibrated an Omori-Utsu decay curve, and the magnitude distribution of aftershocks is assumed to follow a Gutenberg-Richter distribution. We apply uniform and non-uniform spatial distribution of the seismicity across the fault source, by modulating the rates as a decreasing function of distance from the mainshock. The hazard results are computed for short-exposure periods (1 month, before the occurrences of October earthquakes) and compared to the background hazard given by law (MPS04), and to observations at some reference sites. We also show the results of disaggregation computed for the city of Amatrice. Finally, we attempt to update the results in light of the new "main" events that occurred afterwards in the region. All source modeling and hazard calculations are performed using the OpenQuake engine. We discuss the novelties of these works, and the benefits and limitations of both analyses, particularly in such different contexts of seismic hazard.

Clustering of short and long-term co-movements in international financial and commodity markets in wavelet domain

NASA Astrophysics Data System (ADS)

Lahmiri, Salim; Uddin, Gazi Salah; Bekiros, Stelios

2017-11-01

We propose a general framework for measuring short and long term dynamics in asset classes based on the wavelet presentation of clustering analysis. The empirical results show strong evidence of instability of the financial system aftermath of the global financial crisis. Indeed, both short and long-term dynamics have significantly changed after the global financial crisis. This study provides an interesting insights complex structure of global financial and economic system.

Effects of stress on heart rate complexity—A comparison between short-term and chronic stress

PubMed Central

Schubert, C.; Lambertz, M.; Nelesen, R.A.; Bardwell, W.; Choi, J.-B.; Dimsdale, J.E.

2009-01-01

This study examined chronic and short-term stress effects on heart rate variability (HRV), comparing time, frequency and phase domain (complexity) measures in 50 healthy adults. The hassles frequency subscale of the combined hassles and uplifts scale (CHUS) was used to measure chronic stress. Short-term stressor reactivity was assessed with a speech task. HRV measures were determined via surface electrocardiogram (ECG). Because respiration rate decreased during the speech task (p < .001), this study assessed the influence of respiration rate changes on the effects of interest. A series of repeated-measures analyses of covariance (ANCOVA) with Bonferroni adjustment revealed that short-term stress decreased HR D2 (calculated via the pointwise correlation dimension PD2) (p < .001), but increased HR mean (p < .001), standard deviation of R–R (SDRR) intervals (p < .001), low (LF) (p < .001) and high frequency band power (HF) (p = .009). Respiratory sinus arrhythmia (RSA) and LF/HF ratio did not change under short-term stress. Partial correlation adjusting for respiration rate showed that HR D2 was associated with chronic stress (r = −.35, p = .019). Differential effects of chronic and short-term stress were observed on several HRV measures. HR D2 decreased under both stress conditions reflecting lowered functionality of the cardiac pacemaker. The results confirm the importance of complexity metrics in modern stress research on HRV. PMID:19100813

BAYES’ THEOREM AND EARLY SOLAR SHORT-LIVED RADIONUCLIDES: THE CASE FOR AN UNEXCEPTIONAL ORIGIN FOR THE SOLAR SYSTEM

DOE Office of Scientific and Technical Information (OSTI.GOV)

Young, Edward D., E-mail: eyoung@epss.ucla.edu

2016-08-01

The presence of excesses of short-lived radionuclides in the early solar system evidenced in meteorites has been taken as testament to close encounters with exotic nucleosynthetic sources, including supernovae or AGB stars. An analysis of the likelihoods associated with different sources of these extinct nuclides in the early solar system indicates that, rather than being exotic, their abundances were typical of star-forming regions like those observed today in the Galaxy. The radiochemistry of the early solar system is therefore unexceptional, being the consequence of extensive averaging of solids from molecular clouds.

Coaxial-type water load for measuring high voltage, high current and short pulse of a compact Marx system for a high power microwave source

NASA Astrophysics Data System (ADS)

Han, Jaeeun; Kim, Jung-ho; Park, Sang-duck; Yoon, Moohyun; Park, Soo Yong; Choi, Do Won; Shin, Jin Woo; So, Joon Ho

2009-11-01

A coaxial-type water load was used to measure the voltage output from a Marx generator for a high power microwave source. This output had a rise time of 20 ns, a pulse duration of a few hundred ns, and an amplitude up to 500 kV. The design of the coaxial water load showed that it is an ideal resistive divider and can also accurately measure a short pulse. Experiments were performed to test the performance of the Marx generator with the calibrated coaxial water load.

Method and apparatus for upshifting light frequency by rapid plasma creation

DOEpatents

Dawson, John M.; Wilks, Scott C.; Mori, Warren B.; Joshi, Chandrasekhar J.; Sessler, Andrew M.

1990-01-01

Photons of an electromagnetic source wave are frequency-upshifted as a plasma is rapidly created around the path of this propagating source wave. The final frequency can be controlled by adjusting the gas density. A controlled time-varying frequency (chirped) pulse can be produced by using a controlled spatially varying gas density. The plasma must be created in a time which is short compared to the transit time of the light through the plasmas region. For very fast creation over one to at most a few light periods of an overdense plasma, static magnetic fields with short wavelengths are created.

Deep ultraviolet semiconductor light sources for sensing and security

NASA Astrophysics Data System (ADS)

Shatalov, Max; Bilenko, Yuri; Yang, Jinwei; Gaska, Remis

2009-09-01

III-Nitride based deep ultraviolet (DUV) light emitting diodes (LEDs) rapidly penetrate into sensing market owing to several advantages over traditional UV sources (i.e. mercury, xenon and deuterium lamps). Small size, a wide choice of peak emission wavelengths, lower power consumption and reduced cost offer flexibility to system integrators. Short emission wavelength offer advantages for gas detection and optical sensing systems based on UV induced fluorescence. Large modulation bandwidth for these devices makes them attractive for frequency-domain spectroscopy. We will review present status of DUV LED technology and discuss recent advances in short wavelength emitters and high power LED lamps.

Three-phase short circuit calculation method based on pre-computed surface for doubly fed induction generator

NASA Astrophysics Data System (ADS)

Ma, J.; Liu, Q.

2018-02-01

This paper presents an improved short circuit calculation method, based on pre-computed surface to determine the short circuit current of a distribution system with multiple doubly fed induction generators (DFIGs). The short circuit current, injected into power grid by DFIG, is determined by low voltage ride through (LVRT) control and protection under grid fault. However, the existing methods are difficult to calculate the short circuit current of DFIG in engineering practice due to its complexity. A short circuit calculation method, based on pre-computed surface, was proposed by developing the surface of short circuit current changing with the calculating impedance and the open circuit voltage. And the short circuit currents were derived by taking into account the rotor excitation and crowbar activation time. Finally, the pre-computed surfaces of short circuit current at different time were established, and the procedure of DFIG short circuit calculation considering its LVRT was designed. The correctness of proposed method was verified by simulation.

A Preliminary Survey of Short Time-Scale Optical Variables with ROTSE

NASA Astrophysics Data System (ADS)

McKay, T.; Akerlof, C.; Balsano, R.; Bloch, J.; Casperson, D.; Gisler, G.; Kehoe, R.; Lee, B.; Marshall, S.; Rykoff, E.; Smith, D. A.; Szymanski, J.; Wren, J.; ROTSE Collaboration

2000-12-01

We have performed a preliminary optical survey of short timescale variability with the ROTSE-I telephoto array. The data sample is divided into two parts. The first is a survey of 256 square degrees ( 120k sources) imaged every 80 s for a cumulative 20 hrs to a sensitivity of approximately magnitude 15.5. The second is a similarly sensitive survey of 512 square degrees ( 250k sources) imaged every 80 s (with 7 minute gaps) for a total of approximately 60 hrs. A further 0.4 mag. increase in sensitivity is obtained by co-adding these frames in pairs. We have identified a variety of new variable stars in this sample, including many Delta Scuti stars and contact binaries. Preliminary characterization of these sources will be presented.

CeSOX: An experimental test of the sterile neutrino hypothesis with Borexino

NASA Astrophysics Data System (ADS)

Gromov, M.; Agostini, M.; Altenmüller, K.; Appel, S.; Atroshchenko, V.; Bagdasarian, Z.; Basilico, D.; Bellini, G.; Benziger, J.; Bick, D.; Bonfini, G.; Bravo, D.; Caccianiga, B.; Calaprice, F.; Caminata, A.; Caprioli, S.; Carlini, M.; Cavalcante, P.; Chepurnov, A.; Choi, K.; Cloué, O.; Collica, L.; Cribier, M.; D'Angelo, D.; Davini, S.; Derbin, A.; Ding, X. F.; Di Ludovico, A.; Di Noto, L.; Drachnev, I.; Durero, M.; Farinon, S.; Fischer, V.; Fomenko, K.; Formozov, A.; Franco, D.; Gabriele, F.; Gaffiot, J.; Galbiati, C.; Gschwender, M.; Ghiano, C.; Giammarchi, M.; Goretti, A.; Guffanti, D.; Hagner, C.; Houdy, T.; Hungerford, E.; Ianni, Aldo; Ianni, Andrea; Jonquères, N.; Jany, A.; Jeschke, D.; Kobychev, V.; Korablev, D.; Korga, G.; Kornoukhov, V.; Kryn, D.; Lachenmaier, T.; Lasserre, T.; Laubenstein, M.; Litvinovich, E.; Lombardi, F.; Lombardi, P.; Ludhova, L.; Lukyanchenko, G.; Lukyanchenko, L.; Machulin, I.; Manuzio, G.; Marcocci, S.; Maricic, J.; Mention, G.; Martyn, J.; Meroni, E.; Meyer, M.; Miramonti, L.; Misiaszek, M.; Muratova, V.; Musenich, R.; Neumair, B.; Oberauer, L.; Opitz, B.; Orekhov, V.; Ortica, F.; Pallavicini, M.; Papp, L.; Penek, Ö.; Pilipenko, N.; Pocar, A.; Porcelli, A.; Ranucci, G.; Razeto, A.; Re, A.; Redchuk, M.; Romani, A.; Roncin, R.; Rossi, N.; Rottenanger, S.; Schönert, S.; Scola, L.; Semenov, D.; Skorokhvatov, M.; Smirnov, O.; Sotnikov, A.; Stokes, L. F. F.; Suvorov, Y.; Tartaglia, R.; Testera, G.; Thurn, J.; Toropova, M.; Trantel, A.; Unzhakov, E.; Veyssiére, C.; Vishneva, A.; Vivier, M.; Vogelaar, R. B.; von Feilitzsch, F.; Wang, H.; Weinz, S.; Wojcik, M.; Wurm, M.; Yokley, Z.; Zaimidoroga, O.; Zavatarelli, S.; Zuber, K.; Zuzel, G.

2017-12-01

The third phase of the Borexino experiment that’s referred to as SOX is devoted to test the hypothesis of the existence of one (or more) sterile neutrinos at a short baseline (~5-10m). The experimental measurement will be made with artificial sources namely with a 144Ce-144Pr antineutrino source at the first stage (CeSOX) and possibly with a 51Cr neutrino source at the second one. The fixed 144Ce-144Pr sample will be placed beneath the detector in a special pit and the initial activity will be about 100 - 150 kCi. The start of data taking is scheduled for April 2018. The article gives a short description of the preparation for the first stage and shows the expected sensitivity.

Non-destructive component separation using infrared radiant energy

DOEpatents

Simandl, Ronald F [Knoxville, TN; Russell, Steven W [Knoxville, TN; Holt, Jerrid S [Knoxville, TN; Brown, John D [Harriman, TN

2011-03-01

A method for separating a first component and a second component from one another at an adhesive bond interface between the first component and second component. Typically the method involves irradiating the first component with infrared radiation from a source that radiates substantially only short wavelengths until the adhesive bond is destabilized, and then separating the first component and the second component from one another. In some embodiments an assembly of components to be debonded is placed inside an enclosure and the assembly is illuminated from an IR source that is external to the enclosure. In some embodiments an assembly of components to be debonded is simultaneously irradiated by a multi-planar array of IR sources. Often the IR radiation is unidirectional. In some embodiments the IR radiation is narrow-band short wavelength infrared radiation.

Making It Count: Strategies for Improving Mathematics Instruction for Students in Short-Term Facilities. Strategy Guide

ERIC Educational Resources Information Center

Leone, Peter; Wilson, Michael; Mulcahy, Candace

2010-01-01

This guide is designed to support the development of mathematics proficiency for youth in short-term juvenile correctional facilities. Mathematics proficiency includes mastery and fluency in foundational numeracy; an understanding of complex, grade-appropriate concepts and procedures; and application of those competencies to solve relevant,…

A Visual Short-Term Memory Advantage for Objects of Expertise

ERIC Educational Resources Information Center

Curby, Kim M.; Glazek, Kuba; Gauthier, Isabel

2009-01-01

Visual short-term memory (VSTM) is limited, especially for complex objects. Its capacity, however, is greater for faces than for other objects; this advantage may stem from the holistic nature of face processing. If the holistic processing explains this advantage, object expertise--which also relies on holistic processing--should endow experts…

Laparoscopic and open subtotal colectomies have similar short-term results.

PubMed

Hoogenboom, Froukje J; Bosker, Robbert J I; Groen, Henk; Meijerink, Wilhelmus J H J; Lamme, Bas; Pierie, Jean Pierre E N

2013-01-01

Laparoscopic subtotal colectomy (STC) is a complex procedure. It is possible that short-term benefits for segmental resections cannot be attributed to this complex procedure. This study aims to assess differences in short-term results for laparoscopic versus open STC during a 15-year single-institute experience. We reviewed consecutive patients undergoing laparoscopic or open elective or subacute STC from January 1997 to December 2012. Fifty-six laparoscopic and 50 open STCs were performed. The operation time was significantly longer in the laparoscopic group, median 266 min (range 121-420 min), compared to 153 min (range 90-408 min) in the open group (p < 0.001). Median hospital stay showed no statistical difference, 14 days (range 1-129 days) in the laparoscopic and 13 days (range 1-85 days) in the open group. Between-group postoperative complications were not statistically different. Laparoscopic STC has short-term results similar to the open procedure, except for a longer operation time. The laparoscopic approach for STC is therefore only advisable in selected patients combined with extensive preoperative counseling. Copyright © 2013 S. Karger AG, Basel.

Function and regulation of clustered regularly interspaced short palindromic repeats (CRISPR) / CRISPR associated (Cas) systems.

PubMed

Richter, Corinna; Chang, James T; Fineran, Peter C

2012-10-19

Phages are the most abundant biological entities on earth and pose a constant challenge to their bacterial hosts. Thus, bacteria have evolved numerous 'innate' mechanisms of defense against phage, such as abortive infection or restriction/modification systems. In contrast, the clustered regularly interspaced short palindromic repeats (CRISPR) systems provide acquired, yet heritable, sequence-specific 'adaptive' immunity against phage and other horizontally-acquired elements, such as plasmids. Resistance is acquired following viral infection or plasmid uptake when a short sequence of the foreign genome is added to the CRISPR array. CRISPRs are then transcribed and processed, generally by CRISPR associated (Cas) proteins, into short interfering RNAs (crRNAs), which form part of a ribonucleoprotein complex. This complex guides the crRNA to the complementary invading nucleic acid and targets this for degradation. Recently, there have been rapid advances in our understanding of CRISPR/Cas systems. In this review, we will present the current model(s) of the molecular events involved in both the acquisition of immunity and interference stages and will also address recent progress in our knowledge of the regulation of CRISPR/Cas systems.

Instrumentation for Epitaxial Growth of Complex Oxides

DTIC Science & Technology

2015-12-17

synthesis of complex oxide heterostructures. A RF oxygen plasma source was acquired to increase the oxidizing ability of the growth environment, an...improvement that will prove critical in stabilizing materials with high oxidization states. The plasma source and accompanying electronics were purchased...2014 14-Aug-2015 Approved for Public Release; Distribution Unlimited Final Report: Instrumentation for Epitaxial Growth of Complex Oxides The views

Simulation of long-term influence from technical systems on permafrost with various short-scale and hourly operation modes in Arctic region

NASA Astrophysics Data System (ADS)

Vaganova, N. A.

2017-12-01

Technogenic and climatic influences have a significant impact on the degradation of permafrost. Long-term forecasts of such changes during long-time periods have to be taken into account in the oil and gas and construction industries in view to development the Arctic and Subarctic regions. There are considered constantly operating technical systems (for example, oil and gas wells) that affect changes in permafrost, as well as the technical systems that have a short-term impact on permafrost (for example, flare systems for emergency flaring of associated gas). The second type of technical systems is rather complex for simulation, since it is required to reserve both short and long-scales in computations with variable time steps describing the complex technological processes. The main attention is paid to the simulation of long-term influence on the permafrost from the second type of the technical systems.

An ADP-Ribosylation Factor GTPase-activating Protein Git2-short/KIAA0148 Is Involved in Subcellular Localization of Paxillin and Actin Cytoskeletal Organization

PubMed Central

Mazaki, Yuichi; Hashimoto, Shigeru; Okawa, Katsuya; Tsubouchi, Asako; Nakamura, Kuniaki; Yagi, Ryohei; Yano, Hajime; Kondo, Akiko; Iwamatsu, Akihiro; Mizoguchi, Akira; Sabe, Hisataka

2001-01-01

Paxillin acts as an adaptor protein in integrin signaling. We have shown that paxillin exists in a relatively large cytoplasmic pool, including perinuclear areas, in addition to focal complexes formed at the cell periphery and focal adhesions formed underneath the cell. Several ADP-ribosylation factor (ARF) GTPase-activating proteins (GAPs; ARFGAPs) have been shown to associate with paxillin. We report here that Git2-short/KIAA0148 exhibits properties of a paxillin-associated ARFGAP and appears to be colocalized with paxillin, primarily at perinuclear areas. A fraction of Git2-short was also localized to actin-rich structures at the cell periphery. Unlike paxillin, however, Git2-short did not accumulate at focal adhesions underneath the cell. Git2-short is a short isoform of Git2, which is highly homologous to p95PKL, another paxillin-binding protein, and showed a weaker binding affinity toward paxillin than that of Git2. The ARFGAP activities of Git2 and Git2-short have been previously demonstrated in vitro, and we provided evidence that at least one ARF isoform, ARF1, is an intracellular substrate for the GAP activity of Git2-short. We also showed that Git2-short could antagonize several known ARF1-mediated phenotypes: overexpression of Git2-short, but not its GAP-inactive mutant, caused the redistribution of Golgi protein β-COP and reduced the amounts of paxillin-containing focal adhesions and actin stress fibers. Perinuclear localization of paxillin, which was sensitive to ARF inactivation, was also affected by Git2-short overexpression. On the other hand, paxillin localization to focal complexes at the cell periphery was unaffected or even augmented by Git2-short overexpression. Therefore, an ARFGAP protein weakly interacting with paxillin, Git2-short, exhibits pleiotropic functions involving the regulation of Golgi organization, actin cytoskeletal organization, and subcellular localization of paxillin, all of which need to be coordinately regulated during integrin-mediated cell adhesion and intracellular signaling. PMID:11251077

Ion sources for electric propulsion

NASA Technical Reports Server (NTRS)

Stuhlinger, E.

1971-01-01

Ion systems, which accelerate ions of Cs, Hg, or colloid particles by electrostatic fields, are furthest advanced and ready for application. Four kinds of ion sources have been developed: The contact ionization source for Cs as propellants, the electron bombardment source for Cs or Hg, the RF ionization source for Hg, and the hollow needle spray nozzle for colloidal glycerol particles. In each case, the ion beam must be neutralized by injection of electrons shortly behind the exit orifice to avoid adverse space charge effects.

Short-pulse, compressed ion beams at the Neutralized Drift Compression Experiment

DOE PAGES

Seidl, P. A.; Barnard, J. J.; Davidson, R. C.; ...

2016-05-01

We have commenced experiments with intense short pulses of ion beams on the Neutralized Drift Compression Experiment (NDCX-II) at Lawrence Berkeley National Laboratory, with 1-mm beam spot size within 2.5 ns full-width at half maximum. The ion kinetic energy is 1.2 MeV. To enable the short pulse duration and mm-scale focal spot radius, the beam is neutralized in a 1.5-meter-long drift compression section following the last accelerator cell. A short-focal-length solenoid focuses the beam in the presence of the volumetric plasma that is near the target. In the accelerator, the line-charge density increases due to the velocity ramp imparted onmore » the beam bunch. The scientific topics to be explored are warm dense matter, the dynamics of radiation damage in materials, and intense beam and beam-plasma physics including select topics of relevance to the development of heavy-ion drivers for inertial fusion energy. Below the transition to melting, the short beam pulses offer an opportunity to study the multi-scale dynamics of radiation-induced damage in materials with pump-probe experiments, and to stabilize novel metastable phases of materials when short-pulse heating is followed by rapid quenching. First experiments used a lithium ion source; a new plasma-based helium ion source shows much greater charge delivered to the target.« less

ROSAT HRI and ASCA Observations of the Spiral Galaxy NGC 6946 and its Northeast Complex of Luminous Supernova Remnants

NASA Technical Reports Server (NTRS)

Schlegel, E.; Swank, Jean (Technical Monitor)

2001-01-01

Analysis of 80 ks ASCA (Advanced Satellite for Cosmology and Astrophysics) and 60 ks ROSAT HRI (High Resolution Image) observations of the face-on spiral galaxy NGC 6946 are presented. The ASCA image is the first observation of this galaxy above approximately 2 keV. Diffuse emission may be present in the inner approximately 4' extending to energies above approximately 2-3 keV. In the HRI data, 14 pointlike sources are detected, the brightest two being a source very close to the nucleus and a source to the northeast that corresponds to a luminous complex of interacting supernova remnants (SNRs). We detect a point source that lies approximately 30" west of the SNR complex but with a luminosity -1115 of the SNR complex. None of the point sources show evidence of strong variability; weak variability would escape our detection. The ASCA spectrum of the SNR complex shows evidence for an emission line at approximately 0.9 keV that could be either Ne IX at approximately 0.915 keV or a blend of ion stages of Fe L-shell emission if the continuum is fitted with a power law. However, a two-component, Raymond-Smith thermal spectrum with no lines gives an equally valid continuum fit and may be more physically plausible given the observed spectrum below 3 keV. Adopting this latter model, we derive a density for the SNR complex of 10-35 cm(exp -3), consistent with estimates inferred from optical emission-line ratios. The complex's extraordinary X-ray luminosity may be related more to the high density of the surrounding medium than to a small but intense interaction region where two of the complex's SNRs are apparently colliding.

Stanford university medical media and information technologies hosts open source surgical simulation workshop.

PubMed

Cornelius, Craig W; Heinrichs, Leroy; Youngblood, Patricia; Dev, Parvati

2007-01-01

Stanford University Medical Media and Information Technologies's technical workshop "Prototyping of Surgical Simulators using Open Source Simulation Software" was held in August 2006 at Stanford University. The objectives, program, and topics covered are presented in this short report.

Complexity analyses show two distinct types of nonlinear dynamics in short heart period variability recordings

PubMed Central

Porta, Alberto; Bari, Vlasta; Marchi, Andrea; De Maria, Beatrice; Cysarz, Dirk; Van Leeuwen, Peter; Takahashi, Anielle C. M.; Catai, Aparecida M.; Gnecchi-Ruscone, Tomaso

2015-01-01

Two diverse complexity metrics quantifying time irreversibility and local prediction, in connection with a surrogate data approach, were utilized to detect nonlinear dynamics in short heart period (HP) variability series recorded in fetuses, as a function of the gestational period, and in healthy humans, as a function of the magnitude of the orthostatic challenge. The metrics indicated the presence of two distinct types of nonlinear HP dynamics characterized by diverse ranges of time scales. These findings stress the need to render more specific the analysis of nonlinear components of HP dynamics by accounting for different temporal scales. PMID:25806002

Malformation of the canine mitral valve complex.

PubMed

Litu, S K; Tilley, L P

1975-09-15

Twenty-nine dogs, including 13 Great Danes and 5 German Shepherd Dogs and averaging 7.3 months age, were diagnosed clinically and radiographically as having mitral regurgitation. Alterations of the mitral valve complex included enlarged anulus; short thick leaflets, with an occasional cleft; short and stout or long and thin chordae tendineae; upward malposition of atrophic or hypertrophic papillary muscles; insertion of one papillary muscle directly into one or both leaflets; and diffuse endocardial fibrosis, occasionally with jet lesions in te left atrium. Other cardiac anomalies included dysplasia of the tricuspid valve (5 dogs), patent ductus afteriosus (2 dogs), aortic stenosis (2 dogs), and ventricular septal defect (1 dog).

A short note on the paper of Liu et al. (2012). A relative Lempel-Ziv complexity: Application to comparing biological sequences. Chemical Physics Letters, volume 530, 19 March 2012, pages 107-112

NASA Astrophysics Data System (ADS)

Arit, Turkan; Keskin, Burak; Firuzan, Esin; Cavas, Cagin Kandemir; Liu, Liwei; Cavas, Levent

2018-04-01

The report entitled "L. Liu, D. Li, F. Bai, A relative Lempel-Ziv complexity: Application to comparing biological sequences, Chem. Phys. Lett. 530 (2012) 107-112" mentions on the powerful construction of phylogenetic trees based on Lempel-Ziv algorithm. On the other hand, the method explained in the paper does not give promising result on the data set on invasive Caulerpa taxifolia in the Mediterranean Sea. The phylogenetic trees are obtained by the proposed method of the aforementioned paper in this short note.

Effects of irrelevant sounds on phonological coding in reading comprehension and short-term memory.

PubMed

Boyle, R; Coltheart, V

1996-05-01

The effects of irrelevant sounds on reading comprehension and short-term memory were studied in two experiments. In Experiment 1, adults judged the acceptability of written sentences during irrelevant speech, accompanied and unaccompanied singing, instrumental music, and in silence. Sentences varied in syntactic complexity: Simple sentences contained a right-branching relative clause (The applause pleased the woman that gave the speech) and syntactically complex sentences included a centre-embedded relative clause (The hay that the farmer stored fed the hungry animals). Unacceptable sentences either sounded acceptable (The dog chased the cat that eight up all his food) or did not (The man praised the child that sight up his spinach). Decision accuracy was impaired by syntactic complexity but not by irrelevant sounds. Phonological coding was indicated by increased errors on unacceptable sentences that sounded correct. These errors rates were unaffected by irrelevant sounds. Experiment 2 examined effects of irrelevant sounds on ordered recall of phonologically similar and dissimilar word lists. Phonological similarity impaired recall. Irrelevant speech reduced recall but did not interact with phonological similarity. The results of these experiments question assumptions about the relationship between speech input and phonological coding in reading and the short-term store.

Microscale anthropogenic pollution modelling in a small tropical island during weak trade winds: Lagrangian particle dispersion simulations using real nested LES meteorological fields

NASA Astrophysics Data System (ADS)

Cécé, Raphaël; Bernard, Didier; Brioude, Jérome; Zahibo, Narcisse

2016-08-01

Tropical islands are characterized by thermal and orographical forcings which may generate microscale air mass circulations. The Lesser Antilles Arc includes small tropical islands (width lower than 50 km) where a total of one-and-a-half million people live. Air quality over this region is affected by anthropogenic and volcanic emissions, or saharan dust. To reduce risks for the population health, the atmospheric dispersion of emitted pollutants must be predicted. In this study, the dispersion of anthropogenic nitrogen oxides (NOx) is numerically modelled over the densely populated area of the Guadeloupe archipelago under weak trade winds, during a typical case of severe pollution. The main goal is to analyze how microscale resolutions affect air pollution in a small tropical island. Three resolutions of domain grid are selected: 1 km, 333 m and 111 m. The Weather Research and Forecasting model (WRF) is used to produce real nested microscale meteorological fields. Then the weather outputs initialize the Lagrangian Particle Dispersion Model (FLEXPART). The forward simulations of a power plant plume showed good ability to reproduce nocturnal peaks recorded by an urban air quality station. The increase in resolution resulted in an improvement of model sensitivity. The nesting to subkilometer grids helped to reduce an overestimation bias mainly because the LES domains better simulate the turbulent motions governing nocturnal flows. For peaks observed at two air quality stations, the backward sensitivity outputs identified realistic sources of NOx in the area. The increase in resolution produced a sharper inverse plume with a more accurate source area. This study showed the first application of the FLEXPART-WRF model to microscale resolutions. Overall, the coupling model WRF-LES-FLEXPART is useful to simulate the pollutant dispersion during a real case of calm wind regime over a complex terrain area. The forward and backward simulation results showed clearly that the subkilometer resolution of 333 m is necessary to reproduce realistic air pollution patterns in this case of short-range transport over a complex terrain area. Globally, this work contributes to enrich the sparsely documented domain of real nested microscale air pollution modelling. This study dealing with the determination of the proper resolution grid and proper turbulence scheme, is of significant interest to the near-source and complex terrain air quality research community.

X-ray short-time lags in the Fe-K energy band produced by scattering clouds in active galactic nuclei

NASA Astrophysics Data System (ADS)

Mizumoto, Misaki; Done, Chris; Hagino, Kouichi; Ebisawa, Ken; Tsujimoto, Masahiro; Odaka, Hirokazu

2018-07-01

X-rays illuminating the accretion disc in active galactic nuclei give rise to an iron K line and its associated reflection spectrum that are lagged behind the continuum variability by the light-travel time from the source to the disc. The measured lag time-scales in the iron band can be as short as ˜Rg/c, where Rg is the gravitational radius, which is often interpreted as evidence for a very small continuum source close to the event horizon of a rapidly spinning black hole. However, the short lags can also be produced by reflection from more distant material, because the primary photons with no time-delay dilute the time-lags caused by the reprocessed photons. We perform a Monte Carlo simulation to calculate the dilution effect in the X-ray reverberation lags from a half-shell of neutral material placed at 100 Rg from the central source. This gives lags of ˜2 Rg/c, but the iron line is a distinctly narrow feature in the lag-energy plot, whereas the data often show a broader line. We show that both the short lag and the line broadening can be reproduced, if the scattering material is outflowing at ˜0.1c. The velocity structure in the wind can also give shifts in the line profile in the lag-energy plot calculated at different frequencies. Hence we propose that the observed broad iron reverberation lags and shifts in profile as a function of frequency of variability can arise from a disc wind at fairly large distances from the X-ray source.

X-ray short-time lags in the Fe-K energy band produced by scattering clouds in active galactic nuclei

NASA Astrophysics Data System (ADS)

Mizumoto, Misaki; Done, Chris; Hagino, Kouichi; Ebisawa, Ken; Tsujimoto, Masahiro; Odaka, Hirokazu

2018-05-01

X-rays illuminating the accretion disc in active galactic nuclei give rise to an iron K line and its associated reflection spectrum which are lagged behind the continuum variability by the light-travel time from the source to the disc. The measured lag timescales in the iron band can be as short as ˜Rg/c, where Rg is the gravitational radius, which is often interpreted as evidence for a very small continuum source close to the event horizon of a rapidly spinning black hole. However, the short lags can also be produced by reflection from more distant material, because the primary photons with no time-delay dilute the time-lags caused by the reprocessed photons. We perform a Monte-Carlo simulation to calculate the dilution effect in the X-ray reverberation lags from a half-shell of neutral material placed at 100 Rg from the central source. This gives lags of ˜2 Rg/c, but the iron line is a distinctly narrow feature in the lag-energy plot, whereas the data often show a broader line. We show that both the short lag and the line broadening can be reproduced if the scattering material is outflowing at ˜0.1c. The velocity structure in the wind can also give shifts in the line profile in the lag-energy plot calculated at different frequencies. Hence we propose that the observed broad iron reverberation lags and shifts in profile as a function of frequency of variability can arise from a disc wind at fairly large distances from the X-ray source.

Large volume recycling of oceanic lithosphere over short time scales: geochemical constraints from the Caribbean Large Igneous Province

NASA Astrophysics Data System (ADS)

Hauff, F.; Hoernle, K.; Tilton, G.; Graham, D. W.; Kerr, A. C.

2000-01-01

Oceanic flood basalts are poorly understood, short-term expressions of highly increased heat flux and mass flow within the convecting mantle. The uniqueness of the Caribbean Large Igneous Province (CLIP, 92-74 Ma) with respect to other Cretaceous oceanic plateaus is its extensive sub-aerial exposures, providing an excellent basis to investigate the temporal and compositional relationships within a starting plume head. We present major element, trace element and initial Sr-Nd-Pb isotope composition of 40 extrusive rocks from the Caribbean Plateau, including onland sections in Costa Rica, Colombia and Curaçao as well as DSDP Sites in the Central Caribbean. Even though the lavas were erupted over an area of ˜3×10 6 km 2, the majority have strikingly uniform incompatible element patterns (La/Yb=0.96±0.16, n=64 out of 79 samples, 2σ) and initial Nd-Pb isotopic compositions (e.g. 143Nd/ 144Nd in=0.51291±3, ɛNdi=7.3±0.6, 206Pb/ 204Pb in=18.86±0.12, n=54 out of 66, 2σ). Lavas with endmember compositions have only been sampled at the DSDP Sites, Gorgona Island (Colombia) and the 65-60 Ma accreted Quepos and Osa igneous complexes (Costa Rica) of the subsequent hotspot track. Despite the relatively uniform composition of most lavas, linear correlations exist between isotope ratios and between isotope and highly incompatible trace element ratios. The Sr-Nd-Pb isotope and trace element signatures of the chemically enriched lavas are compatible with derivation from recycled oceanic crust, while the depleted lavas are derived from a highly residual source. This source could represent either oceanic lithospheric mantle left after ocean crust formation or gabbros with interlayered ultramafic cumulates of the lower oceanic crust. High 3He/ 4He in olivines of enriched picrites at Quepos are ˜12 times higher than the atmospheric ratio suggesting that the enriched component may have once resided in the lower mantle. Evaluation of the Sm-Nd and U-Pb isotope systematics on isochron diagrams suggests that the age of separation of enriched and depleted components from the depleted MORB source mantle could have been ≤500 Ma before CLIP formation and interpreted to reflect the recycling time of the CLIP source. Mantle plume heads may provide a mechanism for transporting large volumes of possibly young recycled oceanic lithosphere residing in the lower mantle back into the shallow MORB source mantle.

Short spatial filters with spherical lenses for high-power pulsed lasers

DOE Office of Scientific and Technical Information (OSTI.GOV)

Burdonov, K F; Soloviev, A A; Shaikin, A A

We report possible employment of short spatial filters based on spherical lenses in a pulsed laser source (neodymium glass, 300 J, 1 ns). The influence of the spherical aberration on the quality of output radiation and coefficient of conversion to the second harmonics is studied. The ultra-short aberration spatial filter of length 1.9 m with an aperture of 122 mm is experimentally tested. A considerable shortening of multi-cascade pump lasers for modern petawatt laser systems is demonstrated by the employment of short spatial filters without expensive aspherical optics. (elements of laser systems)

Intestinal adaptation in short bowel syndrome: A case report.

PubMed

Palla, Viktoria-Varvara; Karaolanis, Georgios; Pentazos, Panagiotis; Ladopoulos, Alexios; Papageorgiou, Evaggelos

2015-06-01

Short bowel syndrome is a clinical entity that includes loss of energy, fluid, electrolytes or micronutrient balance because of inadequate functional intestinal length. This case report demonstrates the case of a woman who compensated for short bowel syndrome through intestinal adaptation, which is a complex process worthy of further investigation for the avoidance of dependence on total parenteral nutrition and of intestinal transplantation in such patients. Copyright © 2015 Arab Journal of Gastroenterology. Published by Elsevier B.V. All rights reserved.

Molecular identification of organic compounds in atmospheric complex mixtures and relationship to atmospheric chemistry and sources.

PubMed

Mazurek, Monica A

2002-12-01

This article describes a chemical characterization approach for complex organic compound mixtures associated with fine atmospheric particles of diameters less than 2.5 m (PM2.5). It relates molecular- and bulk-level chemical characteristics of the complex mixture to atmospheric chemistry and to emission sources. Overall, the analytical approach describes the organic complex mixtures in terms of a chemical mass balance (CMB). Here, the complex mixture is related to a bulk elemental measurement (total carbon) and is broken down systematically into functional groups and molecular compositions. The CMB and molecular-level information can be used to understand the sources of the atmospheric fine particles through conversion of chromatographic data and by incorporation into receptor-based CMB models. Once described and quantified within a mass balance framework, the chemical profiles for aerosol organic matter can be applied to existing air quality issues. Examples include understanding health effects of PM2.5 and defining and controlling key sources of anthropogenic fine particles. Overall, the organic aerosol compositional data provide chemical information needed for effective PM2.5 management.

Green Power Grids: How Energy from Renewable Sources Affects Networks and Markets

PubMed Central

Mureddu, Mario; Caldarelli, Guido; Chessa, Alessandro; Scala, Antonio; Damiano, Alfonso

2015-01-01

The increasing attention to environmental issues is forcing the implementation of novel energy models based on renewable sources. This is fundamentally changing the configuration of energy management and is introducing new problems that are only partly understood. In particular, renewable energies introduce fluctuations which cause an increased request for conventional energy sources to balance energy requests at short notice. In order to develop an effective usage of low-carbon sources, such fluctuations must be understood and tamed. In this paper we present a microscopic model for the description and for the forecast of short time fluctuations related to renewable sources in order to estimate their effects on the electricity market. To account for the inter-dependencies in the energy market and the physical power dispatch network, we use a statistical mechanics approach to sample stochastic perturbations in the power system and an agent based approach for the prediction of the market players’ behavior. Our model is data-driven; it builds on one-day-ahead real market transactions in order to train agents’ behaviour and allows us to deduce the market share of different energy sources. We benchmarked our approach on the Italian market, finding a good accordance with real data. PMID:26335705

Green Power Grids: How Energy from Renewable Sources Affects Networks and Markets.

PubMed

Mureddu, Mario; Caldarelli, Guido; Chessa, Alessandro; Scala, Antonio; Damiano, Alfonso

2015-01-01

The increasing attention to environmental issues is forcing the implementation of novel energy models based on renewable sources. This is fundamentally changing the configuration of energy management and is introducing new problems that are only partly understood. In particular, renewable energies introduce fluctuations which cause an increased request for conventional energy sources to balance energy requests at short notice. In order to develop an effective usage of low-carbon sources, such fluctuations must be understood and tamed. In this paper we present a microscopic model for the description and for the forecast of short time fluctuations related to renewable sources in order to estimate their effects on the electricity market. To account for the inter-dependencies in the energy market and the physical power dispatch network, we use a statistical mechanics approach to sample stochastic perturbations in the power system and an agent based approach for the prediction of the market players' behavior. Our model is data-driven; it builds on one-day-ahead real market transactions in order to train agents' behaviour and allows us to deduce the market share of different energy sources. We benchmarked our approach on the Italian market, finding a good accordance with real data.

Dynamical systems in economics

NASA Astrophysics Data System (ADS)

Stanojević, Jelena; Kukić, Katarina

2018-01-01

In last few decades much attention is given to explain complex behaviour of very large systems, such as weather, economy, biology and demography. In this paper we give short overview of basic notions in the field of dynamical systems which are relevant for understanding complex nature of some economic models.

Molecular pathways in the transformation of model discoidal lipoprotein complexes induced by lecithin:cholesterol acyltransferase.

PubMed

Nichols, A V; Blanche, P J; Gong, E L; Shore, V G; Forte, T M

1985-05-17

Incubation (24 h, 37 degrees C) of discoidal complexes of phosphatidylcholine and apolipoprotein A-I (molar ratio 95 +/- 10 egg yolk phosphatidylcholine-apolipoprotein A-I; 10.5 X 4.0 nm, long X short dimension; designated, class 3 complexes) with the ultracentrifugal d greater than 1.21 g/ml fraction transformed the discoidal complexes to a small product with apparent mean hydrated and nonhydrated diameter of 7.8 and 6.6 nm, respectively. Formation of the small product was associated with marked reduction in phosphatidylcholine-apolipoprotein AI molar ratio of the complexes (on average from 95:1 to 45:1). Phospholipase A2 activity of lecithin:cholesterol acyltransferase participated in the depletion process, as evidenced by production of unesterified fatty acids. In the presence of the d greater than 1.21 g/ml fraction or partially purified lecithin:cholesterol acyltransferase and a source of unesterified cholesterol, the small product could be transformed to a core-containing (cholesteryl ester) round product with a hydrated and nonhydrated diameter of 8.6 and 7.5 nm, respectively. By means of cross-linking with dimethylsuberimidate, the protein moiety of the small product was shown to contain primarily two apolipoprotein A-I molecules per particle, while the large product contained three apolipoprotein A-I molecules per particle. The increase in number of apolipoprotein A-I molecules per particle during transformation of the small to the large product appeared to result from fusion of the small particles during core build-up and release of excess apolipoprotein A-I from the fusion product. The results obtained with the model complexes were consistent for the most part with recent observations (Chen, C., Applegate, K., King, W.C., Glomset, J.A., Norum, K.R. and Gjone, E. (1984) J. Lipid Res. 25, 269-282) on the transformation, by lecithin:cholesterol acyltransferase, of the small spherical high-density lipoproteins of patients with familial lecithin:cholesterol acyltransferase deficiency.

Volcanic ash leachate compositions and assessment of health and agricultural hazards from 2012 hydrothermal eruptions, Tongariro, New Zealand

NASA Astrophysics Data System (ADS)

Cronin, S. J.; Stewart, C.; Zernack, A. V.; Brenna, M.; Procter, J. N.; Pardo, N.; Christenson, B.; Wilson, T.; Stewart, R. B.; Irwin, M.

2014-10-01

After almost 80 years of quiescence, the upper Te Maari vent on Mt. Tongariro erupted suddenly at 2352 h (NZ time) on 6 August 2012. The short-lived hydrothermal eruption distributed a fine ash of minor volume (~ 5 × 105 m3) over 200 km from source. The threat of further eruptions prompted an investigation of the possible health and agricultural impacts of any future eruptions from this volcano, particularly since the most recent large-scale ash falls in New Zealand in 1995-1996 had generated significant agricultural problems, including livestock deaths. Deposited ash was sampled between 5 and 200 km from the volcano as soon as possible after the eruption. Two sub-lobes of ash were identified from different vent areas and displayed subtly different leaching properties. The first was an initial small lobe directed NNE, likely formed from drifting low-level clouds associated with the initial lateral explosive blast and surges. The main fall lobe, directed eastward, was sourced from a short-lived vertical plume that rose up to c. 8 km. Ash from the initial fall lobe had higher concentrations of F and Al, in single-step leaches as well as in the totals of three, sequential extractions. Further, the initial lobe showed a higher proportion of soluble F and Al extracted in the first leach, compared to totals. A linear relationship between concentrations of Al and F in single leaches from the 6 August eruption was highly significant (Pearson correlation coefficient r = 0.987 for 1:20 leaching ratios and r = 0.971 for 1:100), suggesting the presence of soluble alumino-fluoride complexes (AlFx+ 3 - x). An even more significant 1:1 ratio is displayed for the largest concentration leached ions of Ca and SO4, which correspond to the presence of crystalline gypsum throughout the newly excavated hydrothermal system. Although no fresh magma was erupted in this event, a shallow intrusion prior to the hydrothermal explosion apparently provided significant contents of volcanic gas that was dissolved within the hydrothermal fluids and adhering to ejected particles. This and the ubiquitous presence of gypsum dominated the soluble components of these ash deposits leading to a complex leaching profile. The leaching study carried out here showed that agricultural and human health hazard assessment (particularly of F and S) is not straightforward, particularly because F solubility may be complex and not well characterised by simple leaching studies. In the case of S, which is agriculturally important, saturation effects are apparent using normal leaching protocols and also imply a need for modification of standard methods.

VLA Zeeman Observations of the NGC 6334 Complex

NASA Astrophysics Data System (ADS)

Mayo, E. A.; Sarma, A. P.; Troland, T. H.

2004-05-01

We present OH 1665 and 1667 MHz observations of the NGC 6334 complex taken with the Very Large Array in the BnA configuration. We have combined our data with the lower resolution CnB data of Sarma et al (1999), in order to perform a detailed study of Source A, a compact continuum source in the SW region of the complex. Our observations reveal magnetic fields with peak values of the order of 700μ G toward Source A. Virial estimates presented indicate the significance of the magnetic field in the support of the molecular cloud against gravitational collapse.

Production of sugarcane and tropical grasses as a renewable energy source. Second annual report, 1978-1979

DOE Office of Scientific and Technical Information (OSTI.GOV)

Not Available

1979-01-01

Reseach continued on tropical grasses from Saccharum and related genera as sources of intensively-produced, solar-dried biomass. Categories of candidate grasses include short-, intermediate-, and long-rotation species. These categories are based on the time interval required for maximum dry matter production, and on future management requirements of energy crops for intensive co-production with food crop commodities. Year 1 studies at the greenhouse and field-plot levels were continued and broadened during Year 2. This included candidate screening, importation and quarantine of new clones, breeding, controlled nitrogen and water regimes, chemical growth control, tissue expansion and maturation control, seeding rates, harvest frequency, andmore » variable row spacing. Second-year studies were extended to the project's field-scale and mechanized-harvest phases. These include initial economic anayses for the short-rotation phases. These include initial economic analyses for the short-rotation category of candidate species.« less

Short x-ray pulse generation using deflecting cavities at the Advanced Photon Source.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sajaev, V.; Borland, M.; Chae, Y.-C.

2007-11-11

Storage-ring-based third-generation light sources can provide intense radiation pulses with durations as short as 100 ps. However, there is growing interest within the synchrotron radiation user community in performing experiments with much shorter X-ray pulses. Zholents et al. [Nucl. Instr. and Meth. A 425 (1999) 385] recently proposed using RF orbit deflection to generate sub-ps X-ray pulses. In this scheme, two deflecting cavities are used to deliver a longitudinally dependent vertical kick to the beam. An optical slit can then be used to slice out a short part of the radiation pulse. Implementation of this scheme is planned for onemore » APS beamline in the near future. In this paper, we summarize our feasibility study of this method and the expected X-ray beam parameters. We find that a pulse length of less than two picoseconds can be achieved.« less

Continuous description of fluctuating eccentricities

NASA Astrophysics Data System (ADS)

Blaizot, Jean-Paul; Broniowski, Wojciech; Ollitrault, Jean-Yves

2014-11-01

We consider the initial energy density in the transverse plane of a high energy nucleus-nucleus collision as a random field ρ (x), whose probability distribution P [ ρ ], the only ingredient of the present description, encodes all possible sources of fluctuations. We argue that it is a local Gaussian, with a short-range 2-point function, and that the fluctuations relevant for the calculation of the eccentricities that drive the anisotropic flow have small relative amplitudes. In fact, this 2-point function, together with the average density, contains all the information needed to calculate the eccentricities and their variances, and we derive general model independent expressions for these quantities. The short wavelength fluctuations are shown to play no role in these calculations, except for a renormalization of the short range part of the 2-point function. As an illustration, we compare to a commonly used model of independent sources, and recover the known results of this model.

Probing the Topological Properties of Complex Networks Modeling Short Written Texts

PubMed Central

Amancio, Diego R.

2015-01-01

In recent years, graph theory has been widely employed to probe several language properties. More specifically, the so-called word adjacency model has been proven useful for tackling several practical problems, especially those relying on textual stylistic analysis. The most common approach to treat texts as networks has simply considered either large pieces of texts or entire books. This approach has certainly worked well—many informative discoveries have been made this way—but it raises an uncomfortable question: could there be important topological patterns in small pieces of texts? To address this problem, the topological properties of subtexts sampled from entire books was probed. Statistical analyses performed on a dataset comprising 50 novels revealed that most of the traditional topological measurements are stable for short subtexts. When the performance of the authorship recognition task was analyzed, it was found that a proper sampling yields a discriminability similar to the one found with full texts. Surprisingly, the support vector machine classification based on the characterization of short texts outperformed the one performed with entire books. These findings suggest that a local topological analysis of large documents might improve its global characterization. Most importantly, it was verified, as a proof of principle, that short texts can be analyzed with the methods and concepts of complex networks. As a consequence, the techniques described here can be extended in a straightforward fashion to analyze texts as time-varying complex networks. PMID:25719799

An Overview of Heart Rate Variability Metrics and Norms

PubMed Central

Shaffer, Fred; Ginsberg, J. P.

2017-01-01

Healthy biological systems exhibit complex patterns of variability that can be described by mathematical chaos. Heart rate variability (HRV) consists of changes in the time intervals between consecutive heartbeats called interbeat intervals (IBIs). A healthy heart is not a metronome. The oscillations of a healthy heart are complex and constantly changing, which allow the cardiovascular system to rapidly adjust to sudden physical and psychological challenges to homeostasis. This article briefly reviews current perspectives on the mechanisms that generate 24 h, short-term (~5 min), and ultra-short-term (<5 min) HRV, the importance of HRV, and its implications for health and performance. The authors provide an overview of widely-used HRV time-domain, frequency-domain, and non-linear metrics. Time-domain indices quantify the amount of HRV observed during monitoring periods that may range from ~2 min to 24 h. Frequency-domain values calculate the absolute or relative amount of signal energy within component bands. Non-linear measurements quantify the unpredictability and complexity of a series of IBIs. The authors survey published normative values for clinical, healthy, and optimal performance populations. They stress the importance of measurement context, including recording period length, subject age, and sex, on baseline HRV values. They caution that 24 h, short-term, and ultra-short-term normative values are not interchangeable. They encourage professionals to supplement published norms with findings from their own specialized populations. Finally, the authors provide an overview of HRV assessment strategies for clinical and optimal performance interventions. PMID:29034226

Variable magnification with Kirkpatrick-Baez optics for synchrotron X-ray microscopy

DOE PAGES

Jach, Terrence; Bakulin, Alex S.; Durbin, Stephen M.; ...

2006-05-01

In this study, we describe the distinction between the operation of a short focal length x-ray microscope forming a real image with a laboratory source (convergent illumination) and with a highly collimated intense beam from a synchrotron light source (Kohler illumination).

The Contribution of Short-Term Memory for Serial Order to Early Reading Acquisition: Evidence from a Longitudinal Study

ERIC Educational Resources Information Center

Perez, Trecy Martinez; Majerus, Steve; Poncelet, Martine

2012-01-01

Early reading acquisition skills have been linked to verbal short-term memory (STM) capacity. However, the nature of this relationship remains controversial because verbal STM, like reading acquisition, depends on the complexity of underlying phonological processing skills. This longitudinal study addressed the relation between STM and reading…

L2 Reading Ability: Further Insight into the Short-Circuit Hypothesis.

ERIC Educational Resources Information Center

Taillefer, Gail F.

1996-01-01

Discusses the notion of a language proficiency threshold that short circuits the transfer of reading ability from the native language (L1) to a second language (L2). This study, in which cognitive complexity of tasks and students' L2 proficiency levels vary, focuses on university students in France reading preprofessional English texts. (39…

Visual Short-Term Memory for Complex Objects in 6- and 8-Month-Old Infants

ERIC Educational Resources Information Center

Kwon, Mee-Kyoung; Luck, Steven J.; Oakes, Lisa M.

2014-01-01

Infants' visual short-term memory (VSTM) for simple objects undergoes dramatic development: Six-month-old infants can store in VSTM information about only a simple object presented in isolation, whereas 8-month-old infants can store information about simple objects presented in multiple-item arrays. This study extended this work to examine…

A Short Note on Estimating the Testlet Model with Different Estimators in Mplus

ERIC Educational Resources Information Center

Luo, Yong

2018-01-01

Mplus is a powerful latent variable modeling software program that has become an increasingly popular choice for fitting complex item response theory models. In this short note, we demonstrate that the two-parameter logistic testlet model can be estimated as a constrained bifactor model in Mplus with three estimators encompassing limited- and…

DEVELOPMENT OF A COMPARATIVE POTENCY METHOD FOR CANCER RISK ASSESSMENT OF COMPLEX MIXTURES USING SHORT-TERM 'IN VIVO' AND 'IN VITRO' BIOASSAYS

EPA Science Inventory

A comparative potency method for cancer risk assessment has been developed based upon a constant relative potency hypothesis. This method was developed and tested using data from a battery of short-term mutagenesis bioassays, animal tumorigenicity data and human lung cancer risk ...

Source biases in midlatitude magnetotelluric transfer functions due to Pc3-4 geomagnetic pulsations

NASA Astrophysics Data System (ADS)

Murphy, Benjamin S.; Egbert, Gary D.

2018-01-01

The magnetotelluric (MT) method for imaging the electrical conductivity structure of the Earth is based on the assumption that source magnetic fields can be considered quasi-uniform, such that the spatial scale of the inducing source is much larger than the intrinsic length scale of the electromagnetic induction process (the skin depth). Here, we show using EarthScope MT data that short spatial scale source magnetic fields from geomagnetic pulsations (Pc's) can violate this fundamental assumption. Over resistive regions of the Earth, the skin depth can be comparable to the short meridional range of Pc3-4 disturbances that are generated by geomagnetic field-line resonances (FLRs). In such cases, Pc's can introduce narrow-band bias in MT transfer function estimates at FLR eigenperiods ( 10-100 s). Although it appears unlikely that these biases will be a significant problem for data inversions, further study is necessary to understand the conditions under which they may distort inverse solutions.[Figure not available: see fulltext.

High resolution seismic reflection profiling at Aberdeen Proving Grounds, Maryland

DOE Office of Scientific and Technical Information (OSTI.GOV)

Miller, R.D.; Xia, Jianghai; Swartzel, S.

1996-11-01

The effectiveness of shallow high resolution seismic reflection (i.e., resolution potential) to image geologic interfaces between about 70 and 750 ft at the Aberdeen Proving Grounds, Maryland (APG), appears to vary locally with the geometric complexity of the unconsolidated sediments that overlay crystalline bedrock. The bedrock surface (which represents the primary geologic target of this study) was imaged at each of three test areas on walkaway noise tests and CDP (common depth point) stacked data. Proven high resolution techniques were used to design and acquire data on this survey. Feasibility of the technique and minimum acquisition requirements were determined throughmore » evaluation and correlation of walkaway noise tests, CDP survey lines, and a downhole velocity check shot survey. Data processing and analysis revealed several critical attributes of shallow seismic data from APG that need careful consideration and compensation on reflection data sets. This survey determined: (1) the feasibility of the technique, (2) the resolution potential (both horizontal and vertical) of the technique, (3) the optimum source for this site, (4) the optimum acquisition geometries, (5) general processing flow, and (6) a basic idea of the acoustic variability across this site. Source testing involved an accelerated weight drop, land air gun, downhole black powder charge, sledge hammer/plate, and high frequency vibrator. Shallow seismic reflection profiles provided for a more detailed picture of the geometric complexity and variability of the distinct clay sequences (aquatards), previously inferred from drilling to be present, based on sparse drill holes and basewide conceptual models. The seismic data also reveal a clear explanation for the difficulties previously noted in correlating individual, borehole-identified sand or clay units over even short distances.« less

Multi-level machine learning prediction of protein-protein interactions in Saccharomyces cerevisiae.

PubMed

Zubek, Julian; Tatjewski, Marcin; Boniecki, Adam; Mnich, Maciej; Basu, Subhadip; Plewczynski, Dariusz

2015-01-01

Accurate identification of protein-protein interactions (PPI) is the key step in understanding proteins' biological functions, which are typically context-dependent. Many existing PPI predictors rely on aggregated features from protein sequences, however only a few methods exploit local information about specific residue contacts. In this work we present a two-stage machine learning approach for prediction of protein-protein interactions. We start with the carefully filtered data on protein complexes available for Saccharomyces cerevisiae in the Protein Data Bank (PDB) database. First, we build linear descriptions of interacting and non-interacting sequence segment pairs based on their inter-residue distances. Secondly, we train machine learning classifiers to predict binary segment interactions for any two short sequence fragments. The final prediction of the protein-protein interaction is done using the 2D matrix representation of all-against-all possible interacting sequence segments of both analysed proteins. The level-I predictor achieves 0.88 AUC for micro-scale, i.e., residue-level prediction. The level-II predictor improves the results further by a more complex learning paradigm. We perform 30-fold macro-scale, i.e., protein-level cross-validation experiment. The level-II predictor using PSIPRED-predicted secondary structure reaches 0.70 precision, 0.68 recall, and 0.70 AUC, whereas other popular methods provide results below 0.6 threshold (recall, precision, AUC). Our results demonstrate that multi-scale sequence features aggregation procedure is able to improve the machine learning results by more than 10% as compared to other sequence representations. Prepared datasets and source code for our experimental pipeline are freely available for download from: http://zubekj.github.io/mlppi/ (open source Python implementation, OS independent).

Quantifying the sources of variability in equine faecal egg counts: implications for improving the utility of the method.

PubMed

Denwood, M J; Love, S; Innocent, G T; Matthews, L; McKendrick, I J; Hillary, N; Smith, A; Reid, S W J

2012-08-13

The faecal egg count (FEC) is the most widely used means of quantifying the nematode burden of horses, and is frequently used in clinical practice to inform treatment and prevention. The statistical process underlying the FEC is complex, comprising a Poisson counting error process for each sample, compounded with an underlying continuous distribution of means between samples. Being able to quantify the sources of variability contributing to this distribution of means is a necessary step towards providing estimates of statistical power for future FEC and FECRT studies, and may help to improve the usefulness of the FEC technique by identifying and minimising unwanted sources of variability. Obtaining such estimates require a hierarchical statistical model coupled with repeated FEC observations from a single animal over a short period of time. Here, we use this approach to provide the first comparative estimate of multiple sources of within-horse FEC variability. The results demonstrate that a substantial proportion of the observed variation in FEC between horses occurs as a result of variation in FEC within an animal, with the major sources being aggregation of eggs within faeces and variation in egg concentration between faecal piles. The McMaster procedure itself is associated with a comparatively small coefficient of variation, and is therefore highly repeatable when a sufficiently large number of eggs are observed to reduce the error associated with the counting process. We conclude that the variation between samples taken from the same animal is substantial, but can be reduced through the use of larger homogenised faecal samples. Estimates are provided for the coefficient of variation (cv) associated with each within animal source of variability in observed FEC, allowing the usefulness of individual FEC to be quantified, and providing a basis for future FEC and FECRT studies. Copyright © 2012 Elsevier B.V. All rights reserved.

Single mode, short cavity, Pb-salt diode lasers operating in the 5, 10, and 30-microns spectral regions

NASA Technical Reports Server (NTRS)

Linden, K. J.

1985-01-01

Pb-salt diode lasers are being used as frequency-tunable infrared sources in high resolution spectroscopy and heterodyne detection applications. Recent advances in short cavity, stripe-geometry laser configurations have led to significant increases in maximum CW operating temperature, single mode operation, and increased single mode tuning range. This paper describes short cavity, stripe geometry lasers operating in the 5, 10, and 30-microns spectral regions, with single mode tuning ranges of over 6/cm.

Catalysts for synthesizing various short chain hydrocarbons

DOEpatents

Colmenares, Carlos

1991-01-01

Method and apparatus (10), including novel photocatalysts, are disclosed for the synthesis of various short chain hydrocarbons. Light-transparent SiO.sub.2 aerogels doped with photochemically active uranyl ions (18) are fluidized in a fluidized-bed reactor (12) having a transparent window (16), by hydrogen and CO, C.sub.2 H.sub.4 or C.sub.2 H.sub.6 gas mixtures (20), and exposed to radiation (34) from a light source (32) external to the reactor (12), to produce the short chain hydrocarbons (36).

Utilizing Schottky barriers to suppress short-channel effects in organic transistors

NASA Astrophysics Data System (ADS)

Fernández, Anton F.; Zojer, Karin

2017-10-01

Transistors with short channel lengths exhibit profound deviations from the ideally expected behavior. One of the undesired short-channel effects is an enlarged OFF current that is associated with a premature turn on of the transistor. We present an efficient approach to suppress the OFF current, defined as the current at zero gate source bias, in short-channel organic transistors. We employ two-dimensional device simulations based on the drift-diffusion model to demonstrate that intentionally incorporating a Schottky barrier for injection enhances the ON-OFF ratio in both staggered and coplanar transistor architectures. The Schottky barrier is identified to directly counteract the origin of enlarged OFF currents: Short channels promote a drain-induced barrier lowering. The latter permits unhindered injection of charges even at reverse gate-source bias. An additional Schottky barrier hampers injection for such points of operations. We explain how it is possible to find the Schottky barrier of the smallest height necessary to exactly compensate for the premature turn on. This approach offers a substantial enhancement of the ON-OFF ratio. We show that this roots in the fact that such optimal barrier heights offer an excellent compromise between an OFF current diminished by orders of magnitude and an only slightly reduced ON current.

Unsilencing Critical Conversations in Social-Studies Teacher Education Using Agent-Based Modeling

ERIC Educational Resources Information Center

Hostetler, Andrew; Sengupta, Pratim; Hollett, Ty

2018-01-01

In this article, we argue that when complex sociopolitical issues such as ethnocentrism and racial segregation are represented as complex, emergent systems using agent-based computational models (in short agent-based models or ABMs), discourse about these representations can disrupt social studies teacher candidates' dispositions of teaching…

Role of Working Memory in Typically Developing Children's Complex Sentence Comprehension

ERIC Educational Resources Information Center

Montgomery, James W.; Magimairaj, Beula M.; O'Malley, Michelle H.

2008-01-01

The influence of three mechanisms of working memory (phonological short-term memory (PSTM capacity), attentional resource control/allocation, and processing speed) on children's complex (and simple) sentence comprehension was investigated. Fifty two children (6-12 years) completed a nonword repetition task (indexing PSTM), concurrent verbal…

Haplotype resolution of leukocyte receptor complex in cattle through targeted enrichment and SMRT sequencing

USDA-ARS?s Scientific Manuscript database

The highly repetitive nature of cattle leukocyte receptor complex (LRC) has made it difficult to assemble and fully characterize this region with short reads used by second-generation sequencing. Previously, we reported the first two cattle killer immunoglobulin-like receptors (KIR) haplotypes; one ...

Biological corridors and connectivity [Chapter 21

Treesearch

Samuel A. Cushman; Brad McRae; Frank Adriaensen; Paul Beier; Mark Shirley; Kathy Zeller

2013-01-01

The ability of individual animals to move across complex landscapes is critical for maintaining regional populations in the short term (Fahrig 2003; Cushman 2006), and for species to shift their geographic range in response to climate change (Heller & Zavaleta 2009). As organisms move through spatially complex landscapes, they respond to multiple...

The Seven Silos of Accountability in Higher Education: Systematizing Multiple Logics and Fields

ERIC Educational Resources Information Center

Brown, Joshua Travis

2017-01-01

Higher education accountability is a field characterized by complexity. Prior frameworks grounded in psychometrics, economics, and history fall short in explaining the persistence and composition of its complexity. This article employs organizational theory to identify the multiple conflicting approaches of higher education accountability and…

Source Recertification, Refurbishment, and Transfer Logistics

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gastelum, Zoe N.; Duckworth, Leesa L.; Greenfield, Bryce A.

2013-09-01

The 2012 Gap Analysis of Department of Energy Radiological Sealed Sources, Standards, and Materials for Safeguards Technology Development [1] report, and the subsequent Reconciliation of Source Needs and Surpluses across the U.S. Department of Energy National Laboratory Complex [2] report, resulted in the identification of 33 requests for nuclear or radiological sealed sources for which there was potentially available, suitable material from within the U.S. Department of Energy (DOE) complex to fill the source need. Available, suitable material was defined by DOE laboratories as material slated for excess, or that required recertification or refurbishment before being used for safeguards technologymore » development. This report begins by outlining the logistical considerations required for the shipment of nuclear and radiological materials between DOE laboratories. Then, because of the limited need for transfer of matching sources, the report also offers considerations for an alternative approach – the shipment of safeguards equipment between DOE laboratories or technology testing centers. Finally, this report addresses repackaging needs for the two source requests for which there was available, suitable material within the DOE complex.« less

A GIS-based atmospheric dispersion model for pollutants emitted by complex source areas.

PubMed

Teggi, Sergio; Costanzini, Sofia; Ghermandi, Grazia; Malagoli, Carlotta; Vinceti, Marco

2018-01-01

Gaussian dispersion models are widely used to simulate the concentrations and deposition fluxes of pollutants emitted by source areas. Very often, the calculation time limits the number of sources and receptors and the geometry of the sources must be simple and without holes. This paper presents CAREA, a new GIS-based Gaussian model for complex source areas. CAREA was coded in the Python language, and is largely based on a simplified formulation of the very popular and recognized AERMOD model. The model allows users to define in a GIS environment thousands of gridded or scattered receptors and thousands of complex sources with hundreds of vertices and holes. CAREA computes ground level, or near ground level, concentrations and dry deposition fluxes of pollutants. The input/output and the runs of the model can be completely managed in GIS environment (e.g. inside a GIS project). The paper presents the CAREA formulation and its applications to very complex test cases. The tests shows that the processing time are satisfactory and that the definition of sources and receptors and the output retrieval are quite easy in a GIS environment. CAREA and AERMOD are compared using simple and reproducible test cases. The comparison shows that CAREA satisfactorily reproduces AERMOD simulations and is considerably faster than AERMOD. Copyright © 2017 Elsevier B.V. All rights reserved.

Short Implants: New Horizon in Implant Dentistry.

PubMed

Jain, Neha; Gulati, Manisha; Garg, Meenu; Pathak, Chetan

2016-09-01

The choice of implant length is an essential factor in deciding the survival rates of these implants and the overall success of the prosthesis. Placing an implant in the posterior part of the maxilla and mandible has always been very critical due to poor bone quality and quantity. Long implants can be placed in association with complex surgical procedures such as sinus lift and bone augmentation. These techniques are associated with higher cost, increased treatment time and greater morbidity. Hence, there is need for a less invasive treatment option in areas of poor bone quantity and quality. Data related to survival rates of short implants, their design and prosthetic considerations has been compiled and structured in this manuscript with emphasis on the indications, advantages of short implants and critical biomechanical factors to be taken into consideration when choosing to place them. Studies have shown that comparable success rates can be achieved with short implants as those with long implants by decreasing the lateral forces to the prosthesis, eliminating cantilevers, increasing implant surface area and improving implant to abutment connection. Short implants can be considered as an effective treatment alternative in resorbed ridges. Short implants can be considered as a viable treatment option in atrophic ridge cases in order to avoid complex surgical procedures required to place long implants. With improvement in the implant surface geometry and surface texture, there is an increase in the bone implant contact area which provides a good primary stability during osseo-integration.

Short Implants: New Horizon in Implant Dentistry

PubMed Central

Gulati, Manisha; Garg, Meenu; Pathak, Chetan

2016-01-01

The choice of implant length is an essential factor in deciding the survival rates of these implants and the overall success of the prosthesis. Placing an implant in the posterior part of the maxilla and mandible has always been very critical due to poor bone quality and quantity. Long implants can be placed in association with complex surgical procedures such as sinus lift and bone augmentation. These techniques are associated with higher cost, increased treatment time and greater morbidity. Hence, there is need for a less invasive treatment option in areas of poor bone quantity and quality. Data related to survival rates of short implants, their design and prosthetic considerations has been compiled and structured in this manuscript with emphasis on the indications, advantages of short implants and critical biomechanical factors to be taken into consideration when choosing to place them. Studies have shown that comparable success rates can be achieved with short implants as those with long implants by decreasing the lateral forces to the prosthesis, eliminating cantilevers, increasing implant surface area and improving implant to abutment connection. Short implants can be considered as an effective treatment alternative in resorbed ridges. Short implants can be considered as a viable treatment option in atrophic ridge cases in order to avoid complex surgical procedures required to place long implants. With improvement in the implant surface geometry and surface texture, there is an increase in the bone implant contact area which provides a good primary stability during osseo-integration. PMID:27790598

The Ellipticity Filter-A Proposed Solution to the Mixed Event Problem in Nuclear Seismic Discrimination

DTIC Science & Technology

1974-09-07

ellipticity filter. The source waveforms are recreated by an inverse transform of those complex ampli- tudes associated with the same azimuth...terms of the three complex data points and the ellipticity. Having solved the equations for all frequency bins, the inverse transform of...Transform of those complex amplitudes associated with Source 1, yielding the signal a (t). Similarly, take the inverse Transform of all

Men's strategic preferences for femininity in female faces.

PubMed

Little, Anthony C; Jones, Benedict C; Feinberg, David R; Perrett, David I

2014-08-01

Several evolutionarily relevant sources of individual differences in face preference have been documented for women. Here, we examine three such sources of individual variation in men's preference for female facial femininity: term of relationship, partnership status and self-perceived attractiveness. We show that men prefer more feminine female faces when rating for a short-term relationship and when they have a partner (Study 1). These variables were found to interact in a follow-up study (Study 2). Men who thought themselves attractive also preferred more feminized female faces for short-term relationships than men who thought themselves less attractive (Study 1 and Study 2). In women, similar findings for masculine preferences in male faces have been interpreted as adaptive. In men, such preferences potentially reflect that attractive males are able to compete for high-quality female partners in short-term contexts. When a man has secured a mate, the potential cost of being discovered may increase his choosiness regarding short-term partners relative to unpartnered men, who can better increase their short-term mating success by relaxing their standards. Such potentially strategic preferences imply that men also face trade-offs when choosing relatively masculine or feminine faced partners. In line with a trade-off, women with feminine faces were seen as more likely to be unfaithful and more likely to pursue short-term relationships (Study 3), suggesting that risk of cuckoldry is one factor that may limit men's preferences for femininity in women and could additionally lead to preferences for femininity in short-term mates. © 2013 The British Psychological Society.

Make It Short and Easy: Username Complexity Determines Trustworthiness Above and Beyond Objective Reputation

PubMed Central

Silva, Rita R.; Chrobot, Nina; Newman, Eryn; Schwarz, Norbert; Topolinski, Sascha

2017-01-01

Can the mere name of a seller determine his trustworthiness in the eye of the consumer? In 10 studies (total N = 608) we explored username complexity and trustworthiness of eBay seller profiles. Name complexity was manipulated through variations in username pronounceability and length. These dimensions had strong, independent effects on trustworthiness, with sellers with easy-to-pronounce or short usernames being rated as more trustworthy than sellers with difficult-to-pronounce or long usernames, respectively. Both effects were repeatedly found even when objective information about seller reputation was available. We hypothesized the effect of name complexity on trustworthiness to be based on the experience of high vs. low processing fluency, with little awareness of the underlying process. Supporting this, participants could not correct for the impact of username complexity when explicitly asked to do so. Three alternative explanations based on attributions of the variations in name complexity to seller origin (ingroup vs. outgroup), username generation method (seller personal choice vs. computer algorithm) and age of the eBay profiles (10 years vs. 1 year) were tested and ruled out. Finally, we show that manipulating the ease of reading product descriptions instead of the sellers’ names also impacts the trust ascribed to the sellers. PMID:29312062

Nutrient use by three geographic sources of eastern cottonwood

Treesearch

B. G. Blackmon; James B. Baker; D. T. Cooper

1979-01-01

Three geographic sources (Louisiana, Mississippi, and southern Illinois) of 11-year-old eastern cottonwood (Populus deltoides Bartr.) growing in Mississippi, U.S.A., were studied for differences in biomass and nutrient accumulation. The three sources produced about the same biomass (70-80 t/ha (1 short ton = 2000 lb. = 0.907 t; 1 long ton = 2240 lb. = 1.016 t», but the...

Women's Studies: A Bibliographic Essay.

ERIC Educational Resources Information Center

Kirtland, Monika

The essay section provides a definition and short history of women's studies and explores the implications in regard to the administration and teaching of such courses. The bibliography lists and annotates material useful for all levels of education. Information sources covered include government agencies and societies, reference sources (such as…

Lidar method to estimate emission rates from extended sources

USDA-ARS?s Scientific Manuscript database

Currently, point measurements, often combined with models, are the primary means by which atmospheric emission rates are estimated from extended sources. However, these methods often fall short in their spatial and temporal resolution and accuracy. In recent years, lidar has emerged as a suitable to...

Kurtosis-Based Blind Source Extraction of Complex Non-Circular Signals with Application in EEG Artifact Removal in Real-Time

PubMed Central

Javidi, Soroush; Mandic, Danilo P.; Took, Clive Cheong; Cichocki, Andrzej

2011-01-01

A new class of complex domain blind source extraction algorithms suitable for the extraction of both circular and non-circular complex signals is proposed. This is achieved through sequential extraction based on the degree of kurtosis and in the presence of non-circular measurement noise. The existence and uniqueness analysis of the solution is followed by a study of fast converging variants of the algorithm. The performance is first assessed through simulations on well understood benchmark signals, followed by a case study on real-time artifact removal from EEG signals, verified using both qualitative and quantitative metrics. The results illustrate the power of the proposed approach in real-time blind extraction of general complex-valued sources. PMID:22319461

Detrital zircon provenance of the Late Triassic Songpan-Ganzi complex: Sedimentary record of collision of the North and South China blocks

USGS Publications Warehouse

Weislogel, A.L.; Graham, S.A.; Chang, E.Z.; Wooden, J.L.; Gehrels, G.E.; Yang, H.

2006-01-01

Using detrital zircon geochronology, turbidite deposystems fed from distinct sediment sources can be distinguished within the Songpan-Ganzi complex, a collapsed Middle to Late Triassic turbidite basin of central China. A southern Songpan-Ganzi deposystem initially was sourced solely by erosion of the Qinling-Dabie orogen during early Late Triassic time, then by Qinling-Dabie orogen, North China block, and South China block sources during middle to late Late Triassic time. A northern Songpan-Ganzi system was sourced by erosion of the Qinling-Dabie orogen and the North China block throughout its deposition. These separate deposystems were later tectonically amalgamated to form one complex and then uplifted as the eastern Tibet Plateau. ?? 2006 Geological Society of America.

Effects of Initial Particle Distribution on an Energetic Dispersal of Particles

NASA Astrophysics Data System (ADS)

Rollin, Bertrand; Ouellet, Frederick; Koneru, Rahul; Garno, Joshua; Durant, Bradford

2017-11-01

Accurate predictions of the late time solid particle cloud distribution ensuing an explosive dispersal of particles is an extremely challenging problem for compressible multiphase flow simulations. The source of this difficulty is twofold: (i) The complex sequence of events taking place. Indeed, as the blast wave crosses the surrounding layer of particles, compaction occurs shortly before particles disperse radially at high speed. Then, during the dispersion phase, complex multiphase interactions occurs between particles and detonation products. (ii) Precise characterization of the explosive and particle distribution is virtually impossible. In this numerical experiment, we focus on the sensitivity of late time particle cloud distributions relative to carefully designed initial distributions, assuming the explosive is well described. Using point particle simulations, we study the case of a bed of glass particles surrounding an explosive. Constraining our simulations to relatively low initial volume fractions to prevent reaching of the close packing limit, we seek to describe qualitatively and quantitatively the late time dependency of a solid particle cloud on its distribution before the energy release of an explosive. This work was supported by the U.S. DoE, NNSA, Advanced Simulation and Computing Program, as a Cooperative Agreement under the Predictive Science Academic Alliance Program, under Contract No. DE-NA0002378.

Translation Analysis on Civil Engineering Text Produced by Machine Translator

NASA Astrophysics Data System (ADS)

Sutopo, Anam

2018-02-01

Translation is extremely needed in communication since people have serious problem in the language used. Translation activity is done by the person in charge for translating the material. Translation activity is also able to be done by machine. It is called machine translation, reflected in the programs developed by programmer. One of them is Transtool. Many people used Transtool for helping them in solving the problem related with translation activities. This paper wants to deliver how important is the Transtool program, how effective is Transtool program and how is the function of Transtool for human business. This study applies qualitative research. The sources of data were document and informant. This study used documentation and in dept-interviewing as the techniques for collecting data. The collected data were analyzed by using interactive analysis. The results of the study show that, first; Transtool program is helpful for people in translating the civil engineering text and it functions as the aid or helper, second; the working of Transtool software program is effective enough and third; the result of translation produced by Transtool is good for short and simple sentences and not readable, not understandable and not accurate for long sentences (compound, complex and compound complex) thought the result is informative. The translated material must be edited by the professional translator.

Biotic Nitrogen Enrichment Regulates Calcium Sources to Forests

NASA Astrophysics Data System (ADS)

Pett-Ridge, J. C.; Perakis, S. S.; Hynicka, J. D.

2015-12-01

Calcium is an essential nutrient in forest ecosystems that is susceptible to leaching loss and depletion. Calcium depletion can affect plant and animal productivity, soil acid buffering capacity, and fluxes of carbon and water. Excess nitrogen supply and associated soil acidification are often implicated in short-term calcium loss from soils, but the long-term role of nitrogen enrichment on calcium sources and resupply is unknown. Here we use strontium isotopes (87Sr/86Sr) as a proxy for calcium to investigate how soil nitrogen enrichment from biological nitrogen fixation interacts with bedrock calcium to regulate both short-term available supplies and the long-term sources of calcium in montane conifer forests. Our study examines 22 sites in western Oregon, spanning a 20-fold range of bedrock calcium on sedimentary and basaltic lithologies. In contrast to previous studies emphasizing abiotic control of weathering as a determinant of long-term ecosystem calcium dynamics and sources (via bedrock fertility, climate, or topographic/tectonic controls) we find instead that that biotic nitrogen enrichment of soil can strongly regulate calcium sources and supplies in forest ecosystems. For forests on calcium-rich basaltic bedrock, increasing nitrogen enrichment causes calcium sources to shift from rock-weathering to atmospheric dominance, with minimal influence from other major soil forming factors, despite regionally high rates of tectonic uplift and erosion that can rejuvenate weathering supply of soil minerals. For forests on calcium-poor sedimentary bedrock, we find that atmospheric inputs dominate regardless of degree of nitrogen enrichment. Short-term measures of soil and ecosystem calcium fertility are decoupled from calcium source sustainability, with fundamental implications for understanding nitrogen impacts, both in natural ecosystems and in the context of global change. Our finding that long-term nitrogen enrichment increases forest reliance on atmospheric calcium helps explain reports of greater ecological calcium limitation in an increasingly nitrogen-rich world.

Etiological study of the short needle disease of pine

Treesearch

Francis A. Wood; Stanley P. Pennypacker

1976-01-01

The short needle disease of pines consists of dwarfing, crooking, twisting, and excessive elongation of random needles, failure of buds to develop, reduced lateral branch development and the premature casting of needles. The disease was initially associated with a power plant source of air pollution in the eastern United States during 1969; at that time the cause of...

The Effect of Data Quality on Short-term Growth Model Projections

Treesearch

David Gartner

2005-01-01

This study was designed to determine the effect of FIA's data quality on short-term growth model projections. The data from Georgia's 1996 statewide survey were used for the Southern variant of the Forest Vegetation Simulator to predict Georgia's first annual panel. The effect of several data error sources on growth modeling prediction errors...

[Violent outburst from teenagers in the pediatric emergency room: Complex cases].

PubMed

Cohen, L; Gras-Le Guen, C; Fleury, J; Caldagues, E; Dreno, L; Picherot, G; Vabres, N

2017-12-01

Teenagers admitted to the emergency room for a violent attacks episode are increasingly numerous. The source of agitation is multifactorial for these teenagers, often with a complex course. They jeopardize hospital wards, which are often ill-suited for and overwhelmed during these outbursts. This study aims to identify and describe all the teenagers admitted to the hospital over 1 year for a violent outburst and discuss their management. Retrospective and descriptive study of teenagers admitted to the pediatric emergency department of the Nantes University Hospital for a violent outburst in 2015. During this 1-year study, 99 teenagers out of a total of 182 consultations were admitted for a violent outburst. We noted that 85% of them had a previous history of a violent outburst, 70% of them were seeing a psychologist, and 56% were followed by the child welfare services. Most of the outbursts took place at home and were hetero-aggressive. Upon arrival at the pediatric emergency ward, 90% of the teenagers had calmed down. The mean time spent in the emergency ward was 3h42min. Finally, 31% of the teenagers were hospitalized in the general pediatric unit, 14% in the children's psychiatric department, and 8% in the adult psychiatry ward. We observed a high proportion of complex cases in the teenagers admitted to our emergency department for a violent outburst. These teenagers in distress, with a complex previous history, illustrated the relation between violence against themselves and their own violent behavior toward others. Developing short-stay units for a temporary isolation could be an advantageous multidisciplinary approach to allow somatic, psychological, and social evaluation of these vulnerable patients. Copyright © 2017 Elsevier Masson SAS. All rights reserved.

Tropospheric chemistry research in the U.S.: 1991-1994

NASA Astrophysics Data System (ADS)

Penner, Joyce E.; Atherton, Cynthia S.; Dignon, Jane

1995-07-01

The troposphere is chemically complex. Many of the important species in the troposphere are short-lived, with lifetimes less than or of order of a month. Hence, the composition of the troposphere is regionally diverse, leading to regionally diverse chemical processes which control that composition. With the advent of three-dimensional models and regionally-specific estimates of emissions, however, it has become clear that human activity has perturbed the composition of even short-lived species over vast regions of the globe. The list of short-lived species of concern includes the reactive nitrogen oxides, reactive sulfur, ozone, nonmethane hydrocarbons and carbon monoxide. Observations have established that increases in the long-lived species such as carbon dioxide, methane, nitrous oxide, and the chlorofluorocarbons are taking place with important resulting impacts on stratospheric chemistry. Further, there is some indication that carbonyl sulfide (a major precursor to stratospheric aerosols) may have an important anthropogenic source. Growth of pollutants such as these are of concern because they act as greenhouse gases or aerosol precursors (CO2, CH4, O3, N2O, chlorofluorocarbons, carbonyl sufide, reactive sulfur), as agents for depletion of stratospheric ozone (N2O, chlorofluorocarbons), are harmful to vegetation (O3, acids) or act as nutrients (nitrate, sulfate, trace metals). The chemical interactions are important to understand, because the build up of pollutants depends not only on the rates of their release into the troposphere but on their rate of removal in the troposphere. Removal rates depend on processes which determine the rate of oxidation of the component (which for most species proceeds mainly by reaction with the hydroxyl radical) or through precipitation scavenging or dissolution in the ocean (which requires that the pollutant or its oxidation product(s) be soluble in water).

Estimating Children's Soil/Dust Ingestion Rates through ...

EPA Pesticide Factsheets

Background: Soil/dust ingestion rates are important variables in assessing children’s health risks in contaminated environments. Current estimates are based largely on soil tracer methodology, which is limited by analytical uncertainty, small sample size, and short study duration. Objectives: The objective was to estimate site-specific soil/dust ingestion rates through reevaluation of the lead absorption dose–response relationship using new bioavailability data from the Bunker Hill Mining and Metallurgical Complex Superfund Site (BHSS) in Idaho, USA. Methods: The U.S. Environmental Protection Agency (EPA) in vitro bioavailability methodology was applied to archived BHSS soil and dust samples. Using age-specific biokinetic slope factors, we related bioavailable lead from these sources to children’s blood lead levels (BLLs) monitored during cleanup from 1988 through 2002. Quantitative regression analyses and exposure assessment guidance were used to develop candidate soil/dust source partition scenarios estimating lead intake, allowing estimation of age-specific soil/dust ingestion rates. These ingestion rate and bioavailability estimates were simultaneously applied to the U.S. EPA Integrated Exposure Uptake Biokinetic Model for Lead in Children to determine those combinations best approximating observed BLLs. Results: Absolute soil and house dust bioavailability averaged 33% (SD ± 4%) and 28% (SD ± 6%), respectively. Estimated BHSS age-specific soil/du

Dc microgrid stabilization through fuzzy control of interleaved, heterogeneous storage elements

NASA Astrophysics Data System (ADS)

Smith, Robert David

As microgrid power systems gain prevalence and renewable energy comprises greater and greater portions of distributed generation, energy storage becomes important to offset the higher variance of renewable energy sources and maximize their usefulness. One of the emerging techniques is to utilize a combination of lead-acid batteries and ultracapacitors to provide both short and long-term stabilization to microgrid systems. The different energy and power characteristics of batteries and ultracapacitors imply that they ought to be utilized in different ways. Traditional linear controls can use these energy storage systems to stabilize a power grid, but cannot effect more complex interactions. This research explores a fuzzy logic approach to microgrid stabilization. The ability of a fuzzy logic controller to regulate a dc bus in the presence of source and load fluctuations, in a manner comparable to traditional linear control systems, is explored and demonstrated. Furthermore, the expanded capabilities (such as storage balancing, self-protection, and battery optimization) of a fuzzy logic system over a traditional linear control system are shown. System simulation results are presented and validated through hardware-based experiments. These experiments confirm the capabilities of the fuzzy logic control system to regulate bus voltage, balance storage elements, optimize battery usage, and effect self-protection.

Investigation of air pollution and regional climate change due to anthropogenic aerosols

NASA Astrophysics Data System (ADS)

Nakata, Makiko; Sano, Itaru; Mukai, Sonoyo

2016-10-01

Increased emissions of anthropogenic aerosols associated with economic growth can lead to increased concentrations of hazardous air pollutants. In particular, large cities in East Asia have experienced numerous heavy haze episodes. Atmospheric aerosol distributions in East Asia are complex, being influenced by both natural phenomena and human activity, with urban areas in particular being dominated by fine anthropogenic aerosols released from diesel-powered vehicles and industrial activity. In Japan, air pollution levels have been reduced; nevertheless, in recent years, there is increasing concern regarding air pollution caused by fine particulate matter. The origins of air pollution were examined, focusing on the comparison between aerosol properties observed from satellites and that on the ground. Because of their short life spans, concentrations of anthropogenic aerosols are highest over the source regions, and as a result, the climatic impacts of anthropogenic aerosols are also found to be most pronounced in these regions. In this study, aerosol impacts on climate are assessed by numerical model simulations. The direct effects of aerosols include reduced solar radiation, and hence a decrease in surface temperatures. In addition to these changes in the radiation budget, aerosols have a significant potential to change cloud and precipitation fields. These climatic responses to aerosols can manifest far from their source regions with high industrial activities.

Tuning Into Brown Dwarfs: Long-Term Radio Monitoring of Two Very Low Mass Dwarfs

NASA Astrophysics Data System (ADS)

Van Linge, Russell; Burgasser, Adam J.; Melis, Carl; Williams, Peter K. G.

2017-01-01

The very lowest-mass (VLM) stars and brown dwarfs, with effective temperatures T < 3000 K, exhibit mixed magnetic activity trends, with H-alpha and X-ray emission that declines rapidly beyond type M7/M8, but persistent radio emission in roughly 10-20% of sources. The dozen or so VLM radio emitters known show a broad range of emission characteristics and time-dependent behavior, including steady persistent emission, periodic oscillations, periodic polarized bursts, and aperiodic flares. Understanding the evolution of these variability patterns, and in particular whether they undergo solar-like cycles, requires long-term monitoring. We report the results of a long-term JVLA monitoring program of two magnetically-active VLM dwarf binaries, the young M7 2MASS 1314+1320AB and older L5 2MASS 1315-2649AB. On the bi-weekly cadence, 2MASS 1314 continues to show variability by revealing regular flaring while 2MASS 1315 continues to be a quiescent emitter. On the daily time scale, both sources show a mean flux density that can vary significantly just over a few days. These results suggest long-term radio behavior in radio-emitting VLM dwarfs is just as diverse and complex as short-term behavior.

Integration of Biosynthesis and Long-Distance Transport Establish Organ-Specific Glucosinolate Profiles in Vegetative Arabidopsis[W

PubMed Central

Andersen, Tonni Grube; Nour-Eldin, Hussam Hassan; Fuller, Victoria Louise; Olsen, Carl Erik; Burow, Meike; Halkier, Barbara Ann

2013-01-01

Although it is essential for plant survival to synthesize and transport defense compounds, little is known about the coordination of these processes. Here, we investigate the above- and belowground source-sink relationship of the defense compounds glucosinolates in vegetative Arabidopsis thaliana. In vivo feeding experiments demonstrate that the glucosinolate transporters1 and 2 (GTR1 and GTR2), which are essential for accumulation of glucosinolates in seeds, are likely to also be involved in bidirectional distribution of glucosinolates between the roots and rosettes, indicating phloem and xylem as their transport pathways. Grafting of wild-type, biosynthetic, and transport mutants show that both the rosette and roots are able to synthesize aliphatic and indole glucosinolates. While rosettes constitute the major source and storage site for short-chained aliphatic glucosinolates, long-chained aliphatic glucosinolates are synthesized both in roots and rosettes with roots as the major storage site. Our grafting experiments thus indicate that in vegetative Arabidopsis, GTR1 and GTR2 are involved in bidirectional long-distance transport of aliphatic but not indole glucosinolates. Our data further suggest that the distinct rosette and root glucosinolate profiles in Arabidopsis are shaped by long-distance transport and spatially separated biosynthesis, suggesting that integration of these processes is critical for plant fitness in complex natural environments. PMID:23995084

Gene finding in metatranscriptomic sequences.

PubMed

Ismail, Wazim Mohammed; Ye, Yuzhen; Tang, Haixu

2014-01-01

Metatranscriptomic sequencing is a highly sensitive bioassay of functional activity in a microbial community, providing complementary information to the metagenomic sequencing of the community. The acquisition of the metatranscriptomic sequences will enable us to refine the annotations of the metagenomes, and to study the gene activities and their regulation in complex microbial communities and their dynamics. In this paper, we present TransGeneScan, a software tool for finding genes in assembled transcripts from metatranscriptomic sequences. By incorporating several features of metatranscriptomic sequencing, including strand-specificity, short intergenic regions, and putative antisense transcripts into a Hidden Markov Model, TranGeneScan can predict a sense transcript containing one or multiple genes (in an operon) or an antisense transcript. We tested TransGeneScan on a mock metatranscriptomic data set containing three known bacterial genomes. The results showed that TranGeneScan performs better than metagenomic gene finders (MetaGeneMark and FragGeneScan) on predicting protein coding genes in assembled transcripts, and achieves comparable or even higher accuracy than gene finders for microbial genomes (Glimmer and GeneMark). These results imply, with the assistance of metatranscriptomic sequencing, we can obtain a broad and precise picture about the genes (and their functions) in a microbial community. TransGeneScan is available as open-source software on SourceForge at https://sourceforge.net/projects/transgenescan/.

Oxygenate Supply/Demand Balances in the Short-Term Integrated Forecasting Model (Short-Term Energy Outlook Supplement March 1998)

EIA Publications

1998-01-01

The blending of oxygenates, such as fuel ethanol and methyl tertiary butyl ether (MTBE), into motor gasoline has increased dramatically in the last few years because of the oxygenated and reformulated gasoline programs. Because of the significant role oxygenates now have in petroleum product markets, the Short-Term Integrated Forecasting System (STIFS) was revised to include supply and demand balances for fuel ethanol and MTBE. The STIFS model is used for producing forecasts in the Short-Term Energy Outlook. A review of the historical data sources and forecasting methodology for oxygenate production, imports, inventories, and demand is presented in this report.

GRB 060614 in the canonical fireshell model

NASA Astrophysics Data System (ADS)

Caito, L.; Bernardini, M. G.; Bianco, C. L.; Dainotti, M. G.; Guida, R.; Ruffini, R.

2008-10-01

Gamma-Ray Burst (GRB) 060614 is the first nearby long duration GRB clearly not associated to any bright Ib/c Supernova. The explosion of this burst undermines one of the fundamental assumptions of the standard scenario and opens new horizons and hints of investigation. GRB 060614, hardly classifiable as a short GRB, is not either a ``typical'' long GRB since it occurs in a low star forming region. Moreover, it presents deep similarities with GRB 970228, which is the prototype of the ``fake'' short bursts, or better canonical GRBs disguised as short ones. Within the ``fireshell'' model ([1]), we test if this ``anomalous'' source can be a disguised short GRB([2]).

A High-Power Broadband Terahertz Source Enabled by Three-Dimensional Light Confinement in a Plasmonic Nanocavity

DOE PAGES

Yardimci, Nezih Tolga; Cakmakyapan, Semih; Hemmati, Soroosh; ...

2017-06-23

The scope and potential uses of time-domain terahertz imaging and spectroscopy are mainly limited by the low optical-to-terahertz conversion efficiency of photoconductive terahertz sources. State-of-theart photoconductive sources utilize short-carrier-lifetime semiconductors to recombine carriers that cannot contribute to efficient terahertz generation and cause additional thermal dissipation. Here, we present a novel photoconductive terahertz source that offers a significantly higher efficiency compared with terahertz sources fabricated on short-carrier-lifetime substrates. The key innovative feature of this source is the tight three-dimensional confinement of the optical pump beam around the terahertz nanoantennas that are used as radiating elements. This is achieved by means ofmore » a nanocavity formed by plasmonic structures and a distributed Bragg reflector. Consequently, almost all of the photo-generated carriers can be routed to the terahertz nanoantennas within a sub-picosecond time-scale. This results in a very strong, ultrafast current that drives the nanoantennas to produce broadband terahertz radiation. We experimentally demonstrate that this terahertz source can generate 4 mW pulsed terahertz radiation under an optical pump power of 720 mW over the 0.1–4 THz frequency range. This is the highest reported power level for terahertz radiation from a photoconductive terahertz source, representing more than an order of magnitude of enhancement in the optical-to-terahertz conversion efficiency compared with state-of-the-art photoconductive terahertz sources fabricated on shortcarrier- lifetime substrates.« less

Possibilities for serial femtosecond crystallography sample delivery at future light sourcesa)

PubMed Central

Chavas, L. M. G.; Gumprecht, L.; Chapman, H. N.

2015-01-01

Serial femtosecond crystallography (SFX) uses X-ray pulses from free-electron laser (FEL) sources that can outrun radiation damage and thereby overcome long-standing limits in the structure determination of macromolecular crystals. Intense X-ray FEL pulses of sufficiently short duration allow the collection of damage-free data at room temperature and give the opportunity to study irreversible time-resolved events. SFX may open the way to determine the structure of biological molecules that fail to crystallize readily into large well-diffracting crystals. Taking advantage of FELs with high pulse repetition rates could lead to short measurement times of just minutes. Automated delivery of sample suspensions for SFX experiments could potentially give rise to a much higher rate of obtaining complete measurements than at today's third generation synchrotron radiation facilities, as no crystal alignment or complex robotic motions are required. This capability will also open up extensive time-resolved structural studies. New challenges arise from the resulting high rate of data collection, and in providing reliable sample delivery. Various developments for fully automated high-throughput SFX experiments are being considered for evaluation, including new implementations for a reliable yet flexible sample environment setup. Here, we review the different methods developed so far that best achieve sample delivery for X-ray FEL experiments and present some considerations towards the goal of high-throughput structure determination with X-ray FELs. PMID:26798808

A Simple Flight Mill for the Study of Tethered Flight in Insects.

PubMed

Attisano, Alfredo; Murphy, James T; Vickers, Andrew; Moore, Patricia J

2015-12-10

Flight in insects can be long-range migratory flights, intermediate-range dispersal flights, or short-range host-seeking flights. Previous studies have shown that flight mills are valuable tools for the experimental study of insect flight behavior, allowing researchers to examine how factors such as age, host plants, or population source can influence an insects' propensity to disperse. Flight mills allow researchers to measure components of flight such as speed and distance flown. Lack of detailed information about how to build such a device can make their construction appear to be prohibitively complex. We present a simple and relatively inexpensive flight mill for the study of tethered flight in insects. Experimental insects can be tethered with non-toxic adhesives and revolve around an axis by means of a very low friction magnetic bearing. The mill is designed for the study of flight in controlled conditions as it can be used inside an incubator or environmental chamber. The strongest points are the very simple electronic circuitry, the design that allows sixteen insects to fly simultaneously allowing the collection and analysis of a large number of samples in a short time and the potential to use the device in a very limited workspace. This design is extremely flexible, and we have adjusted the mill to accommodate different species of insects of various sizes.

Modelling Short-Term Maximum Individual Exposure from Airborne Hazardous Releases in Urban Environments. Part ΙI: Validation of a Deterministic Model with Wind Tunnel Experimental Data.

PubMed

Efthimiou, George C; Bartzis, John G; Berbekar, Eva; Hertwig, Denise; Harms, Frank; Leitl, Bernd

2015-06-26

The capability to predict short-term maximum individual exposure is very important for several applications including, for example, deliberate/accidental release of hazardous substances, odour fluctuations or material flammability level exceedance. Recently, authors have proposed a simple approach relating maximum individual exposure to parameters such as the fluctuation intensity and the concentration integral time scale. In the first part of this study (Part I), the methodology was validated against field measurements, which are governed by the natural variability of atmospheric boundary conditions. In Part II of this study, an in-depth validation of the approach is performed using reference data recorded under truly stationary and well documented flow conditions. For this reason, a boundary-layer wind-tunnel experiment was used. The experimental dataset includes 196 time-resolved concentration measurements which detect the dispersion from a continuous point source within an urban model of semi-idealized complexity. The data analysis allowed the improvement of an important model parameter. The model performed very well in predicting the maximum individual exposure, presenting a factor of two of observations equal to 95%. For large time intervals, an exponential correction term has been introduced in the model based on the experimental observations. The new model is capable of predicting all time intervals giving an overall factor of two of observations equal to 100%.

Shifts in the meso- and bathypelagic archaea communities composition during recovery and short-term handling of decompressed deep-sea samples.

PubMed

La Cono, Violetta; Smedile, Francesco; La Spada, Gina; Arcadi, Erika; Genovese, Maria; Ruggeri, Gioacchino; Genovese, Lucrezia; Giuliano, Laura; Yakimov, Michail M

2015-06-01

Dark ocean microbial communities are actively involved in chemoautotrophic and anaplerotic fixation of bicarbonate. Thus, aphotic pelagic realm of the ocean might represent a significant sink of CO2 and source of primary production. However, the estimated metabolic activities in the dark ocean are fraught with uncertainties. Typically, deep-sea samples are recovered to the sea surface for downstream processing on deck. Shifts in ambient settings, associated with such treatments, can likely change the metabolic activity and community structure of deep-sea adapted autochthonous microbial populations. To estimate influence of recovery and short-term handling of deep-sea samples, we monitored the succession of bathypelagic microbial community during its 3 days long on deck incubation. We demonstrated that at the end of exposition, the deep-sea archaeal population decreased threefold, whereas the bacterial fraction doubled in size. As revealed by phylogenetic analyses of amoA gene transcripts, dominance of the active ammonium-oxidizing bathypelagic Thaumarchaeota groups shifted over time very fast. These findings demonstrated the simultaneous existence of various 'deep-sea ecotypes', differentially reacting to the sampling and downstream handling. Our study supports the hypothesis that metabolically active members of meso- and bathypelagic Thaumarchaeota possess the habitat-specific distribution, metabolic complexity and genetic divergence at subpopulation level. © 2015 Society for Applied Microbiology and John Wiley & Sons Ltd.

Short-chain chlorinated paraffins (SCCPs) in surface soil from a background area in China: occurrence, distribution, and congener profiles.

PubMed

Wang, Xue-Tong; Zhang, Yuan; Miao, Yi; Ma, Ling-Ling; Li, Yuan-Cheng; Chang, Yue-Ya; Wu, Ming-Hong

2013-07-01

Short-chain chlorinated paraffins (SCCPs) are extremely complex technical mixtures of polychlorinated n-alkanes with carbon chain lengths from C10 to C13 and chlorine content between 49 and 70%. SCCPs are under consideration for inclusion in the Stockholm Convention on persistent organic pollutants. SCCPs have been used extensively in industrial production, but little is known about the pollution level in soil environment in China. In this study, levels and distribution of SCCPs in soil samples from Chongming Island were analyzed. Concentrations of total SCCPs in soil samples ranged from 0.42 to 420 ng g(-1), with a median of 9.6 ng g(-1). The ubiquitous occurrence of SCCPs in Chongming Island implied that long-range atmospheric transport and soil-air exchange may be the most important pathways for SCCP contamination in the background area. The localized SCCP contamination could be derived from an unidentified source. Hierarchical cluster analysis indicated that C13- and C11-congeners were predominant in most soils and C10- and C12-congeners dominated in the remaining soils. Cl7- and Cl8-congeners were on the average the most dominant chlorine congeners in nearly all soils. Principal component analysis suggested that the separation of even and odd carbon chain congeners occurred during long-range atmospheric transport and aging in soil in the study area.

Quantification of short- and medium-chain chlorinated paraffins in environmental samples by gas chromatography quadrupole time-of-flight mass spectrometry.

PubMed

Gao, Wei; Wu, Jing; Wang, Yawei; Jiang, Guibin

2016-06-24

Chlorinated paraffins (CPs) are technical products produced and used in bulk for a number of purposes. However, the analysis of CPs is challenging, as they are complex mixtures of compounds and isomers. We herein report the development of an analytical method for the analysis of short-chain CPs (SCCPs) and medium-chain CPs (MCCPs) using quadrupole time-of-flight high-resolution mass spectrometry (GC-NCI-qTOF-HRMS). This method employs gas chromatography with a chemical ionization source working in negative mode. The linear relationship between chlorination and the CP total response factors was applied to quantify the CP content and the congener group distribution patterns. In a single injection, 24 SCCP formula groups and 24 MCCP formula groups were quantified. Extraction of accurate masses using qTOF-HRMS allowed the SCCPs and MCCPs to be distinguished, with interference from other chemicals (e.g., PCBs) being largely avoided. The SCCP and MCCP detection limits were 24-81ng/mL and 27-170ng/mL, respectively. Comparison of the obtained results with analytical results from gas chromatography coupled with electron capture negative ionization low-resolution mass spectrometry (GC-ECNI-LRMS) indicate that the developed technique is a more accurate and convenient method for the analysis of CPs in samples from a range of matrices. Copyright © 2016 Elsevier B.V. All rights reserved.

Catchment-scale herbicides transport: Theory and application

NASA Astrophysics Data System (ADS)

Bertuzzo, E.; Thomet, M.; Botter, G.; Rinaldo, A.

2013-02-01

This paper proposes and tests a model which couples the description of hydrologic flow and transport of herbicides at catchment scales. The model accounts for streamflow components' age to characterize short and long term fluctuations of herbicide flux concentrations in stream waters, whose peaks exceeding a toxic threshold are key to exposure risk of aquatic ecosystems. The model is based on a travel time formulation of transport embedding a source zone that describes near surface herbicide dynamics. To this aim we generalize a recently proposed scheme for the analytical derivation of travel time distributions to the case of solutes that can be partially taken up by transpiration and undergo chemical degradation. The framework developed is evaluated by comparing modeled hydrographs and atrazine chemographs with those measured in the Aabach agricultural catchment (Switzerland). The model proves reliable in defining complex transport features shaped by the interplay of long term processes, related to the persistence of solute components in soils, and short term dynamics related to storm inter-arrivals. The effects of stochasticity in rainfall patterns and application dates on concentrations and loads in runoff are assessed via Monte Carlo simulations, highlighting the crucial role played by the first rainfall event occurring after herbicide application. A probabilistic framework for critical determinants of exposure risk to aquatic communities is defined. Modeling of herbicides circulation at catchment scale thus emerges as essential tools for ecological risk assessment.

A Probabilistic Clustering Theory of the Organization of Visual Short-Term Memory

ERIC Educational Resources Information Center

Orhan, A. Emin; Jacobs, Robert A.

2013-01-01

Experimental evidence suggests that the content of a memory for even a simple display encoded in visual short-term memory (VSTM) can be very complex. VSTM uses organizational processes that make the representation of an item dependent on the feature values of all displayed items as well as on these items' representations. Here, we develop a…

Function and Regulation of Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) / CRISPR Associated (Cas) Systems

PubMed Central

Richter, Corinna; Chang, James T.; Fineran, Peter C.

2012-01-01

Phages are the most abundant biological entities on earth and pose a constant challenge to their bacterial hosts. Thus, bacteria have evolved numerous ‘innate’ mechanisms of defense against phage, such as abortive infection or restriction/modification systems. In contrast, the clustered regularly interspaced short palindromic repeats (CRISPR) systems provide acquired, yet heritable, sequence-specific ‘adaptive’ immunity against phage and other horizontally-acquired elements, such as plasmids. Resistance is acquired following viral infection or plasmid uptake when a short sequence of the foreign genome is added to the CRISPR array. CRISPRs are then transcribed and processed, generally by CRISPR associated (Cas) proteins, into short interfering RNAs (crRNAs), which form part of a ribonucleoprotein complex. This complex guides the crRNA to the complementary invading nucleic acid and targets this for degradation. Recently, there have been rapid advances in our understanding of CRISPR/Cas systems. In this review, we will present the current model(s) of the molecular events involved in both the acquisition of immunity and interference stages and will also address recent progress in our knowledge of the regulation of CRISPR/Cas systems. PMID:23202464

Complex network structure influences processing in long-term and short-term memory.

PubMed

Vitevitch, Michael S; Chan, Kit Ying; Roodenrys, Steven

2012-07-01

Complex networks describe how entities in systems interact; the structure of such networks is argued to influence processing. One measure of network structure, clustering coefficient, C, measures the extent to which neighbors of a node are also neighbors of each other. Previous psycholinguistic experiments found that the C of phonological word-forms influenced retrieval from the mental lexicon (that portion of long-term memory dedicated to language) during the on-line recognition and production of spoken words. In the present study we examined how network structure influences other retrieval processes in long- and short-term memory. In a false-memory task-examining long-term memory-participants falsely recognized more words with low- than high-C. In a recognition memory task-examining veridical memories in long-term memory-participants correctly recognized more words with low- than high-C. However, participants in a serial recall task-examining redintegration in short-term memory-recalled lists comprised of high-C words more accurately than lists comprised of low-C words. These results demonstrate that network structure influences cognitive processes associated with several forms of memory including lexical, long-term, and short-term.

[Influence of mental rotation of objects on psychophysiological functions of women].

PubMed

Chikina, L V; Fedorchuk, S V; Trushina, V A; Ianchuk, P I; Makarchuk, M Iu

2012-01-01

An integral part of activity of modern human beings is an involvement to work with the computer systems which, in turn, produces a nervous - emotional tension. Hence, a problem of control of the psychophysiological state of workmen with the purpose of health preservation and success of their activity and the problem of application of rehabilitational actions are actual. At present it is known that the efficiency of rehabilitational procedures rises following application of the complex of regenerative programs. Previously performed by us investigation showed that mental rotation is capable to compensate the consequences of a nervous - emotional tension. Therefore, in the present work we investigated how the complex of spatial tasks developed by us influences psychophysiological performances of tested women for which the psycho-emotional tension with the usage of computer technologies is more essential, and the procedure of mental rotation is more complex task for them, than for men. The complex of spatial tasks applied in the given work included: mental rotation of simple objects (letters and digits), mental rotation of complex objects (geometrical figures) and mental rotation of complex objects with the usage of a short-term memory. Execution of the complex of spatial tasks reduces the time of simple and complex sensomotor response, raises parameters of a short-term memory, brain work capacity and improves nervous processes. Collectively, mental rotation of objects can be recommended as a rehabilitational resource for compensation of consequences of any psycho-emotional strain, both for men, and for women.

Short-term evaluation of arthroscopic management of tennis elbow; including resection of radio-capitellar capsular complex.

PubMed

Babaqi, AbdulRahman A; Kotb, Mohammed M; Said, Hatem G; AbdelHamid, Mohamed M; ElKady, Hesham A; ElAssal, Maher A

2014-06-01

There has been controversy regarding the pathogenesis and treatment of lateral epicondylitis. Different surgical techniques for the treatment of lateral epicondylitis prescribed. The purpose of this study was to evaluate the short-term outcomes of arthroscopic management including resection of the radio-capitellar capsular complex, using different validated scores. In this study, arthroscopic resection of a capsular fringe complex was done beside debridement of the undersurface of Extensor Carpi Radialis Brevis (ECRB). Thirty-one patients with recalcitrant lateral epicondylitis for a minimum of 6 months had surgery. In all patients, a collar-like band of radio-capitellar capsular complex was found to impinge on the radial head and subluxate into the radio-capitellar joint with manipulation under direct vision. Outcomes were assessed using Mayo Elbow Performance Index (MEPI), the Patient-Rated Tennis Elbow Evaluation (PRTEE), and the Disability of the Arm, Shoulder, and Hand (DASH), beside visual analog scale (VAS) for pain and satisfaction criteria. After arthroscopic surgery, overall satisfaction was extremely positive, over the 31 patients, 93.5% of the patients are satisfied. The mean score for pain improved from 8.64 to 1.48 points. The total PRTEE improved from 55.53 to 10.39 points. The mean MEPI score was improved from 61.82 to 94.10 points. DASH score also improved from 24.46 to 4.81 points. All improvements are statistically significant (P < 0.05). Arthroscopic release of ECRB in patients with chronic lateral epicondylitis is a reproducible method with a marked improvement in function within a short period, with special consideration for resection of radio-capitellar capsular complex.

Dangerous news: media decision making about climate change risk.

PubMed

Smith, Joe

2005-12-01

This article explores the role of broadcast news media decision makers in shaping public understanding and debate of climate change risks. It locates the media within a "tangled web" of communication and debate between sources, media, and publics. The article draws on new qualitative research in the British context. The main body of it focuses on media source strategies, on climate change storytelling in news, and the "myth of detachment" sustained by many news decision makers. The empirical evidence, gathered between 1997 and 2004, is derived primarily from recordings and notes drawn from a series of seminars that has brought together equal numbers of BBC news and television decision makers and environment/development specialists. The seminars have created a rare space for extended dialogue between media and specialist perspectives on the communication of complex climate change science and policy. While the article acknowledges the distinctive nature of the BBC as a public sector broadcaster, the evidence confirms and extends current understanding of the career of climate change within the media more broadly. The working group discussions have explored issues arising out of how stories are sourced and, in the context of competitive and time-pressured newsrooms, shaped and presented in short news pieces. Particularly significant is the disjuncture between ways of talking about uncertainty within science and policy discourse and media constructions of objectivity, truth, and balance. The article concludes with a summary of developments in media culture, technology, and practice that are creating opportunities for enhanced public understanding and debate of climate change risks. It also indicates the need for science and policy communities to be more active critics and sources of news.

Using an epiphytic moss to identify previously unknown sources of atmospheric cadmium pollution.

PubMed

Donovan, Geoffrey H; Jovan, Sarah E; Gatziolis, Demetrios; Burstyn, Igor; Michael, Yvonne L; Amacher, Michael C; Monleon, Vicente J

2016-07-15

Urban networks of air-quality monitors are often too widely spaced to identify sources of air pollutants, especially if they do not disperse far from emission sources. The objectives of this study were to test the use of moss bio-indicators to develop a fine-scale map of atmospherically-derived cadmium and to identify the sources of cadmium in a complex urban setting. We collected 346 samples of the moss Orthotrichum lyellii from deciduous trees in December, 2013 using a modified randomized grid-based sampling strategy across Portland, Oregon. We estimated a spatial linear model of moss cadmium levels and predicted cadmium on a 50m grid across the city. Cadmium levels in moss were positively correlated with proximity to two stained-glass manufacturers, proximity to the Oregon-Washington border, and percent industrial land in a 500m buffer, and negatively correlated with percent residential land in a 500m buffer. The maps showed very high concentrations of cadmium around the two stained-glass manufacturers, neither of which were known to environmental regulators as cadmium emitters. In addition, in response to our findings, the Oregon Department of Environmental Quality placed an instrumental monitor 120m from the larger stained-glass manufacturer in October, 2015. The monthly average atmospheric cadmium concentration was 29.4ng/m(3), which is 49 times higher than Oregon's benchmark of 0.6ng/m(3), and high enough to pose a health risk from even short-term exposure. Both stained-glass manufacturers voluntarily stopped using cadmium after the monitoring results were made public, and the monthly average cadmium levels precipitously dropped to 1.1ng/m(3) for stained-glass manufacturer #1 and 0.67ng/m(3) for stained-glass manufacturer #2. Published by Elsevier B.V.

Development, Evaluation, and Application of a Primary Aerosol Model.

PubMed

Wang, I T; Chico, T; Huang, Y H; Farber, R J

1999-09-01

The Segmented-Plume Primary Aerosol Model (SPPAM) has been developed over the past several years. The earlier model development goals were simply to generalize the widely used Industrial Source Complex Short-Term (ISCST) model to simulate plume transport and dispersion under light wind conditions and to handle a large number of roadway or line sources. The goals have been expanded to include development of improved algorithm for effective plume transport velocity, more accurate and efficient line and area source dispersion algorithms, and recently, a more realistic and computationally efficient algorithm for plume depletion due to particle dry deposition. A performance evaluation of the SPPAM has been carried out using the 1983 PNL dual tracer experimental data. The results show the model predictions to be in good agreement with observations in both plume advection-dispersion and particulate matter (PM) depletion by dry deposition. For PM 2.5 impact analysis, the SPPAM has been applied to the Rubidoux area of California. Emission sources included in the modeling analysis are: paved road dust, diesel vehicular exhaust, gasoline vehicular exhaust, and tire wear particles from a large number of roadways in Rubidoux and surrounding areas. For the selected modeling periods, the predicted primary PM 2.5 to primary PM10 concentration ratios for the Rubidoux sampling station are in the range of 0.39-0.46. The organic fractions of the primary PM 2.5 impacts are estimated to be at least 34-41%. Detailed modeling results indicate that the relatively high organic fractions are primarily due to the proximity of heavily traveled roadways north of the sampling station. The predictions are influenced by a number of factors; principal among them are the receptor locations relative to major roadways, the volume and composition of traffic on these roadways, and the prevailing meteorological conditions.

Holocene loess deposition and soil formation as competing processes, Matanuska Valley, southern Alaska

USGS Publications Warehouse

Muhs, D.R.; McGeehin, J.P.; Beann, J.; Fisher, E.

2004-01-01

Although loess-paleosol sequences are among the most important records of Quaternary climate change and past dust deposition cycles, few modern examples of such sedimentation systems have been studied. Stratigraphic studies and 22 new accelerator mass spectrometry radiocarbon ages from the Matanuska Valley in southern Alaska show that loess deposition there began sometime after ???6500 14C yr B.P. and has continued to the present. The silts are produced through grinding by the Matanuska and Knik glaciers, deposited as outwash, entrained by strong winds, and redeposited as loess. Over a downwind distance of ???40 km, loess thickness, sand content, and sand-plus-coarse-silt content decrease, whereas fine-silt content increases. Loess deposition was episodic, as shown by the presence of paleosols, at distances >10 km from the outwash plain loess source. Stratigraphic complexity is at a maximum (i.e., the greatest number of loesses and paleosols) at intermediate (10-25 km) distances from the loess source. Surface soils increase in degree of development with distance downwind from the source, where sedimentation rates are lower. Proximal soils are Entisols or Inceptisols, whereas distal soils are Spodosols. Ratios of mobile CaO, K2O, and Fe2O3 to immobile TiO2 show decreases in surface horizons with distance from the source. Thus, as in China, where loess deposition also takes place today, eolian sedimentation and soil formation are competing processes. Study of loess and paleosols in southern Alaska shows that particle size can vary over short distances, loess deposition can be episodic over limited time intervals, and soils developed in stabilized loess can show considerable variability under the same vegetation. ?? 2004 University of Washington. All rights reserved.

Complex Network Structure Influences Processing in Long-Term and Short-Term Memory

ERIC Educational Resources Information Center

Vitevitch, Michael S.; Chan, Kit Ying; Roodenrys, Steven

2012-01-01

Complex networks describe how entities in systems interact; the structure of such networks is argued to influence processing. One measure of network structure, clustering coefficient, C, measures the extent to which neighbors of a node are also neighbors of each other. Previous psycholinguistic experiments found that the C of phonological…

Complex approach to the investigation of short fiber-optic comunication lines

NASA Astrophysics Data System (ADS)

Sukhoivanov, I. A.; Kontar', A. A.; Kublik, A. V.; Makarevich, V. S.

The paper proposes a method of complex measurements based on the consideration of the parameters of all the elements used in a specific multimode fiber-optic communication line. It is shown that the error in measuring losses in waveguides up to 20 m long can reach a value of 60 percent.

Short-Chain 3-Hydroxyacyl-Coenzyme A Dehydrogenase Associates with a Protein Super-Complex Integrating Multiple Metabolic Pathways

PubMed Central

Narayan, Srinivas B.; Master, Stephen R.; Sireci, Anthony N.; Bierl, Charlene; Stanley, Paige E.; Li, Changhong; Stanley, Charles A.; Bennett, Michael J.

2012-01-01

Proteins involved in mitochondrial metabolic pathways engage in functionally relevant multi-enzyme complexes. We previously described an interaction between short-chain 3-hydroxyacyl-coenzyme A dehydrogenase (SCHAD) and glutamate dehydrogenase (GDH) explaining the clinical phenotype of hyperinsulinism in SCHAD-deficient patients and adding SCHAD to the list of mitochondrial proteins capable of forming functional, multi-pathway complexes. In this work, we provide evidence of SCHAD's involvement in additional interactions forming tissue-specific metabolic super complexes involving both membrane-associated and matrix-dwelling enzymes and spanning multiple metabolic pathways. As an example, in murine liver, we find SCHAD interaction with aspartate transaminase (AST) and GDH from amino acid metabolic pathways, carbamoyl phosphate synthase I (CPS-1) from ureagenesis, other fatty acid oxidation and ketogenesis enzymes and fructose-bisphosphate aldolase, an extra-mitochondrial enzyme of the glycolytic pathway. Most of the interactions appear to be independent of SCHAD's role in the penultimate step of fatty acid oxidation suggesting an organizational, structural or non-enzymatic role for the SCHAD protein. PMID:22496890

Infants with complex congenital heart diseases show poor short-term memory in the mobile paradigm at 3 months of age.

PubMed

Chen, Chao-Ying; Harrison, Tondi; Heathcock, Jill

2015-08-01

The purpose of this study was to examine learning, short-term memory and general development including cognitive, motor, and language domains in infants with Complex Congenital Heart Defects (CCDH). Ten infants with CCHD (4 males, 6 females) and 14 infants with typical development (TD) were examined at 3 months of age. The mobile paradigm, where an infant's leg is tethered to an overhead mobile, was used to evaluate learning and short-term memory. The Bayley Scales of Infant Development 3rd edition (Bayley-III) was used to evaluate general development in cognitive, motor, and language domains. Infants with CCHD and infants with TD both showed learning with significant increase in kicking rate (p<0.001) across periods of the mobile paradigm, but only infants with TD demonstrated short-term memory (p=0.017) in the mobile paradigm. There were no differences on cognitive, motor, and language development between infants with CCHD and infants with TD on the Bayley-III. Early assessment is necessary to guide targeted treatment in infants with CCHD. One-time assessment may fail to detect potential cognitive impairments during early infancy in infants with CCHD. Supportive intervention programs for infants with CCHD that focuses on enhancing short-term memory are recommended. Copyright © 2015 Elsevier Inc. All rights reserved.

Bremsstrahlung Dose Yield for High-Intensity Short-Pulse Laser–Solid Experiments

DOE PAGES

Liang, Taiee; Bauer, Johannes M.; Liu, James C.; ...

2016-12-01

A bremsstrahlung source term has been developed by the Radiation Protection (RP) group at SLAC National Accelerator Laboratory for high-intensity short-pulse laser–solid experiments between 10 17 and 10 22 W cm –2. This source term couples the particle-in-cell plasma code EPOCH and the radiation transport code FLUKA to estimate the bremsstrahlung dose yield from laser–solid interactions. EPOCH characterizes the energy distribution, angular distribution, and laser-to-electron conversion efficiency of the hot electrons from laser–solid interactions, and FLUKA utilizes this hot electron source term to calculate a bremsstrahlung dose yield (mSv per J of laser energy on target). The goal of thismore » paper is to provide RP guidelines and hazard analysis for high-intensity laser facilities. In conclusion, a comparison of the calculated bremsstrahlung dose yields to radiation measurement data is also made.« less

Characterizing Interference in Radio Astronomy Observations through Active and Unsupervised Learning

NASA Technical Reports Server (NTRS)

Doran, G.

2013-01-01

In the process of observing signals from astronomical sources, radio astronomers must mitigate the effects of manmade radio sources such as cell phones, satellites, aircraft, and observatory equipment. Radio frequency interference (RFI) often occurs as short bursts (< 1 ms) across a broad range of frequencies, and can be confused with signals from sources of interest such as pulsars. With ever-increasing volumes of data being produced by observatories, automated strategies are required to detect, classify, and characterize these short "transient" RFI events. We investigate an active learning approach in which an astronomer labels events that are most confusing to a classifier, minimizing the human effort required for classification. We also explore the use of unsupervised clustering techniques, which automatically group events into classes without user input. We apply these techniques to data from the Parkes Multibeam Pulsar Survey to characterize several million detected RFI events from over a thousand hours of observation.

A Comprehensive Probabilistic Tsunami Hazard Assessment: Multiple Sources and Short-Term Interactions

NASA Astrophysics Data System (ADS)

Anita, G.; Selva, J.; Laura, S.

2011-12-01

We develop a comprehensive and total probabilistic tsunami hazard assessment (TotPTHA), in which many different possible source types concur to the definition of the total tsunami hazard at given target sites. In a multi-hazard and multi-risk perspective, such an innovative approach allows, in principle, to consider all possible tsunamigenic sources, from seismic events, to slides, asteroids, volcanic eruptions, etc. In this respect, we also formally introduce and discuss the treatment of interaction/cascade effects in the TotPTHA analysis. We demonstrate how external triggering events may induce significant temporary variations in the tsunami hazard. Because of this, such effects should always be considered, at least in short-term applications, to obtain unbiased analyses. Finally, we prove the feasibility of the TotPTHA and of the treatment of interaction/cascade effects by applying this methodology to an ideal region with realistic characteristics (Neverland).

Bremsstrahlung Dose Yield for High-Intensity Short-Pulse Laser–Solid Experiments

DOE Office of Scientific and Technical Information (OSTI.GOV)

Liang, Taiee; Bauer, Johannes M.; Liu, James C.

A bremsstrahlung source term has been developed by the Radiation Protection (RP) group at SLAC National Accelerator Laboratory for high-intensity short-pulse laser–solid experiments between 10 17 and 10 22 W cm –2. This source term couples the particle-in-cell plasma code EPOCH and the radiation transport code FLUKA to estimate the bremsstrahlung dose yield from laser–solid interactions. EPOCH characterizes the energy distribution, angular distribution, and laser-to-electron conversion efficiency of the hot electrons from laser–solid interactions, and FLUKA utilizes this hot electron source term to calculate a bremsstrahlung dose yield (mSv per J of laser energy on target). The goal of thismore » paper is to provide RP guidelines and hazard analysis for high-intensity laser facilities. In conclusion, a comparison of the calculated bremsstrahlung dose yields to radiation measurement data is also made.« less

Lifetimes and stabilities of familiar explosives molecular adduct complexes during ion mobility measurements

PubMed Central

McKenzie, Alan; DeBord, John Daniel; Ridgeway, Mark; Park, Melvin; Eiceman, Gary; Fernandez-Lima, Francisco

2015-01-01

Trapped ion mobility spectrometry coupled to mass spectrometry (TIMS-MS) was utilized for the separation and identification of familiar explosives in complex mixtures. For the first time, molecular adduct complex lifetimes, relative stability, binding energies and candidate structures are reported for familiar explosives. Experimental and theoretical results showed that the adduct size and reactivity, complex binding energy and the explosive structure tailors the stability of the molecular adduct complex. TIMS flexibility to adapt the mobility separation as a function of the molecular adduct complex stability (i.e., short or long IMS experiments / low or high IMS resolution) permits targeted measurements of explosives in complex mixtures with higher confidence levels. PMID:26153567

Strong anticipation and long-range cross-correlation: Application of detrended cross-correlation analysis to human behavioral data

NASA Astrophysics Data System (ADS)

Delignières, Didier; Marmelat, Vivien

2014-01-01

In this paper, we analyze empirical data, accounting for coordination processes between complex systems (bimanual coordination, interpersonal coordination, and synchronization with a fractal metronome), by using a recently proposed method: detrended cross-correlation analysis (DCCA). This work is motivated by the strong anticipation hypothesis, which supposes that coordination between complex systems is not achieved on the basis of local adaptations (i.e., correction, predictions), but results from a more global matching of complexity properties. Indeed, recent experiments have evidenced a very close correlation between the scaling properties of the series produced by two coordinated systems, despite a quite weak local synchronization. We hypothesized that strong anticipation should result in the presence of long-range cross-correlations between the series produced by the two systems. Results allow a detailed analysis of the effects of coordination on the fluctuations of the series produced by the two systems. In the long term, series tend to present similar scaling properties, with clear evidence of long-range cross-correlation. Short-term results strongly depend on the nature of the task. Simulation studies allow disentangling the respective effects of noise and short-term coupling processes on DCCA results, and suggest that the matching of long-term fluctuations could be the result of short-term coupling processes.

Evolution of the Quadrantid meteor stream

NASA Technical Reports Server (NTRS)

Jones, James; Jones, William

1992-01-01

According to previous orbital calculations, the last close approach of the Quadrantid stream with Jupiter occurred 3200 years ago at which time the parent comet of the stream may have been captured into its present short-period orbit. If this is the case the stream may only be a few thousand years old. We have modeled the evolution of the stream to determine if such a short time scale is consistent with the observed features of the Quadrantid/ delta- Aquarid/Arietid/Ursid complex. A detailed modeling of a stream consisting of 500 test particles released 4000 yr ago and which included the effects of the gravitational perturbations of 6 planets as well as the likely spread in the initial orbital elements resulting from the ejection of the grains from the comet was carried out. Our calculations indicate that an intense shower should be seen a few days before the Quadrantid shower, and that, 4000 yr is too short a period for the branch corresponding to the D-Arietid branch to appear. We have considered the quasi-constants of motion 1/a and J, the Tisserand quantity, and find that the Ursids and the D-Arietids are unlikely to be members of the complex, and that, the complex is probably be less than 4000 yr old.

Multiclausal Utterances Aren't Just for Big Kids: A Framework for Analysis of Complex Syntax Production in Spoken Language of Preschool- and Early School-Age Children

ERIC Educational Resources Information Center

Arndt, Karen Barako; Schuele, C. Melanie

2013-01-01

Complex syntax production emerges shortly after the emergence of two-word combinations in oral language and continues to develop through the school-age years. This article defines a framework for the analysis of complex syntax in the spontaneous language of preschool- and early school-age children. The purpose of this article is to provide…

Topical Application of Tranexamic Acid to Reduce Blood Loss During Complex Combat Related Spine Trauma Surgery

DTIC Science & Technology

2015-10-01

AWARD NUMBER: W81XWH-14-2-0177 TITLE: Topical Application of Tranexamic Acid to Reduce Blood Loss During Complex Combat-Related Spine Trauma...COVERED (From - To) 30 Sep 2014 - 29 Sep 2015 4. TITLE AND SUBTITLE Topical Application of Tranexamic Acid to Reduce Blood Loss During Complex...application will be submitted shortly and successfully. 15. SUBJECT TERMS Spine; Tranexamic Acid ; Perioperative blood loss; Trauma; Antifibrinolytic

Simultaneous EEG and MEG source reconstruction in sparse electromagnetic source imaging.

PubMed

Ding, Lei; Yuan, Han

2013-04-01

Electroencephalography (EEG) and magnetoencephalography (MEG) have different sensitivities to differently configured brain activations, making them complimentary in providing independent information for better detection and inverse reconstruction of brain sources. In the present study, we developed an integrative approach, which integrates a novel sparse electromagnetic source imaging method, i.e., variation-based cortical current density (VB-SCCD), together with the combined use of EEG and MEG data in reconstructing complex brain activity. To perform simultaneous analysis of multimodal data, we proposed to normalize EEG and MEG signals according to their individual noise levels to create unit-free measures. Our Monte Carlo simulations demonstrated that this integrative approach is capable of reconstructing complex cortical brain activations (up to 10 simultaneously activated and randomly located sources). Results from experimental data showed that complex brain activations evoked in a face recognition task were successfully reconstructed using the integrative approach, which were consistent with other research findings and validated by independent data from functional magnetic resonance imaging using the same stimulus protocol. Reconstructed cortical brain activations from both simulations and experimental data provided precise source localizations as well as accurate spatial extents of localized sources. In comparison with studies using EEG or MEG alone, the performance of cortical source reconstructions using combined EEG and MEG was significantly improved. We demonstrated that this new sparse ESI methodology with integrated analysis of EEG and MEG data could accurately probe spatiotemporal processes of complex human brain activations. This is promising for noninvasively studying large-scale brain networks of high clinical and scientific significance. Copyright © 2011 Wiley Periodicals, Inc.

Polarized negative ions

DOE Office of Scientific and Technical Information (OSTI.GOV)

Haeberli, W.

1981-04-01

This paper presents a survey of methods, commonly in use or under development, to produce beams of polarized negative ions for injection into accelerators. A short summary recalls how the hyperfine interaction is used to obtain nuclear polarization in beams of atoms. Atomic-beam sources for light ions are discussed. If the best presently known techniques are incorporated in all stages of the source, polarized H/sup -/ and D/sup -/ beams in excess of 10 ..mu..A can probably be achieved. Production of polarized ions from fast (keV) beams of polarized atoms is treated separately for atoms in the H(25) excited statemore » (Lamb-Shift source) and atoms in the H(1S) ground state. The negative ion beam from Lamb-Shift sources has reached a plateau just above 1 ..mu..A, but this beam current is adequate for many applications and the somewhat lower beam current is compensated by other desirable characteristics. Sources using fast polarized ground state atoms are in a stage of intense development. The next sections summarize production of polarized heavy ions by the atomic beam method, which is well established, and by optical pumping, which has recently been demonstrated to yield very large nuclear polarization. A short discussion of proposed ion sources for polarized /sup 3/He/sup -/ ions is followed by some concluding remarks.« less

OGLE-2003-BLG-262: Finite-Source Effects from a Point-Mass Lens

NASA Astrophysics Data System (ADS)

Yoo, Jaiyul; DePoy, D. L.; Gal-Yam, A.; Gaudi, B. S.; Gould, A.; Han, C.; Lipkin, Y.; Maoz, D.; Ofek, E. O.; Park, B.-G.; Pogge, R. W.; Mu-Fun Collaboration; Udalski, A.; Soszyński, I.; Wyrzykowski, Ł.; Kubiak, M.; Szymański, M.; Pietrzyński, G.; Szewczyk, O.; Żebruń, K.; OGLE Collaboration

2004-03-01

We analyze OGLE-2003-BLG-262, a relatively short (tE=12.5+/-0.1 day) microlensing event generated by a point-mass lens transiting the face of a K giant source in the Galactic bulge. We use the resulting finite-source effects to measure the angular Einstein radius, θE=195+/-17 μas, and so constrain the lens mass to the FWHM interval 0.08

A broadband permeability measurement of FeTaN lamination stack by the shorted microstrip line method

NASA Astrophysics Data System (ADS)

Chen, Xin; Ma, Yungui; Xu, Feng; Wang, Peng; Ong, C. K.

2009-01-01

In this paper, the microwave characteristics of a FeTaN lamination stack are studied with a shorted microstrip line method. The FeTaN lamination stack was fabricated by gluing 54 layers of FeTaN units with epoxy together. The FeTaN units were deposited on both sides of an 8 μm polyethylene terephthate (Mylar) film as the substrate by rf magnetron sputtering. On each side of the Mylar substrate, three 100-nm FeTaN layers are laminated with two 8 nm Al2O3 layers. The complex permeability of FeTaN lamination stack is calculated by the scattering parameters using the shorted load transmission line model based on the quasi-transverse-electromagnetic approximation. A full wave analysis combined with an optimization process is employed to determine the accurate effective permeability values. The optimized complex permeability data can be used for the microwave filter design.

Reducing the beam impedance of the kicker at the 3-GeV rapid cycling synchrotron of the Japan Proton Accelerator Research Complex

NASA Astrophysics Data System (ADS)

Shobuda, Yoshihiro; Chin, Yong Ho; Hayashi, Naoki; Irie, Yoshiro; Takayanagi, Tomohiro; Togashi, Tomohito; Toyama, Takeshi; Yamamoto, Kazami; Yamamoto, Masanobu

2018-06-01

The present four-terminal kicker at the rapid cycling synchrotron (RCS) at the Japan Proton Accelerator Research Complex has the power-saving benefit that it allows beam extraction by doubling the excitation currents with two shorted ends. In this configuration, two terminals of the kicker are connected to the pulse-forming line while the other two are terminated in a short circuit. On the other hand, beam instabilities are excited in the RCS by the kicker beam impedances, which result from the short-circuit termination of the kicker. In this paper, we describe a scheme to reduce the beam impedance of the kicker using diodes (nonlinear devices), while retaining the benefit of the doubled kicker excitation currents. We employ a simulation technique to determine the beam impedance of the kicker, even when such nonlinear devices and long cables are included. The characteristic of beam impedance measured using the accelerated beams is well explained by that obtained from the simulation.

Making a report of a short trip in an ophiolitic complex with Google Earth

NASA Astrophysics Data System (ADS)

Aubret, Marianne

2017-04-01

Plate tectonics is taught in French secondary school (lower and upper-sixth). According to the curriculum, the comprehension of plate-tectonic processes and concepts should be based on field data. For example, the Alpine's ocean history is studied to understand how mountain ranges are formed. In this context, Corsica is a great open-air laboratory, but unfortunately, the traffic conditions are very difficult in the island and despite the short distances, it's almost impossible for teachers to take their students to the remarkable geologic spots. The «défilé de l'Inzecca» is one of them: there you can see a part of the alpine's ophiolitic complex. The aim of this activity is to elaborate a « KMZ folder » in Google Earth as a report of a short trip thanks to the students' data field; it is also the occasion to enrich the Google Earth KMZ folder already available for our teaching.

Mapping and phasing of structural variation in patient genomes using nanopore sequencing.

PubMed

Cretu Stancu, Mircea; van Roosmalen, Markus J; Renkens, Ivo; Nieboer, Marleen M; Middelkamp, Sjors; de Ligt, Joep; Pregno, Giulia; Giachino, Daniela; Mandrile, Giorgia; Espejo Valle-Inclan, Jose; Korzelius, Jerome; de Bruijn, Ewart; Cuppen, Edwin; Talkowski, Michael E; Marschall, Tobias; de Ridder, Jeroen; Kloosterman, Wigard P

2017-11-06

Despite improvements in genomics technology, the detection of structural variants (SVs) from short-read sequencing still poses challenges, particularly for complex variation. Here we analyse the genomes of two patients with congenital abnormalities using the MinION nanopore sequencer and a novel computational pipeline-NanoSV. We demonstrate that nanopore long reads are superior to short reads with regard to detection of de novo chromothripsis rearrangements. The long reads also enable efficient phasing of genetic variations, which we leveraged to determine the parental origin of all de novo chromothripsis breakpoints and to resolve the structure of these complex rearrangements. Additionally, genome-wide surveillance of inherited SVs reveals novel variants, missed in short-read data sets, a large proportion of which are retrotransposon insertions. We provide a first exploration of patient genome sequencing with a nanopore sequencer and demonstrate the value of long-read sequencing in mapping and phasing of SVs for both clinical and research applications.

High-energy astrophysics and the search for sources of gravitational waves

NASA Astrophysics Data System (ADS)

O'Brien, P. T.; Evans, P.

2018-05-01

The dawn of the gravitational-wave (GW) era has sparked a greatly renewed interest into possible links between sources of high-energy radiation and GWs. The most luminous high-energy sources-gamma-ray bursts (GRBs)-have long been considered as very likely sources of GWs, particularly from short-duration GRBs, which are thought to originate from the merger of two compact objects such as binary neutron stars and a neutron star-black hole binary. In this paper, we discuss: (i) the high-energy emission from short-duration GRBs; (ii) what other sources of high-energy radiation may be observed from binary mergers; and (iii) how searches for high-energy electromagnetic counterparts to GW events are performed with current space facilities. While current high-energy facilities, such as Swift and Fermi, play a crucial role in the search for electromagnetic counterparts, new space missions will greatly enhance our capabilities for joint observations. We discuss why such facilities, which incorporate new technology that enables very wide-field X-ray imaging, are required if we are to truly exploit the multi-messenger era. This article is part of a discussion meeting issue `The promises of gravitational-wave astronomy'.