Spatial orientation of different frequencies within the echolocation beam of a Tursiops truncatus and Pseudorca crassidens.

PubMed

Ibsen, Stuart D; Nachtigall, Paul E; Krause-Nehring, Jacqueline; Kloepper, Laura; Breese, Marlee; Li, Songhai; Vlachos, Stephanie

2012-08-01

A two-dimensional array of 16 hydrophones was created to map the spatial distribution of different frequencies within the echolocation beam of a Tursiops truncatus and a Pseudorca crassidens. It was previously shown that both the Tursiops and Pseudorca only paid attention to frequencies between 29 and 42 kHz while echolocating. Both individuals tightly focused the 30 kHz frequency and the spatial location of the focus was consistently pointed toward the target. At 50 kHz the beam was less focused and less precisely pointed at the target. At 100 kHz the focus was often completely lost and was not pointed at the target. This indicates that these individuals actively focused the beam toward the target only in the frequency range they paid attention to. Frequencies outside this range were left unfocused and undirected. This focusing was probably achieved through sensorimotor control of the melon morphology and nasal air sacs. This indicates that both morphologically different species can control the spatial distribution of different frequency ranges within the echolocation beam to create consistent ensonation of desired targets.

Spatial distribution of dust in galaxies from the Integral field unit data

NASA Astrophysics Data System (ADS)

Zafar, Tayyaba; Sophie Dubber, Andrew Hopkins

2018-01-01

An important characteristic of the dust is it can be used as a tracer of stars (and gas) and tell us about the composition of galaxies. Sub-mm and infrared studies can accurately determine the total dust mass and its spatial distribution in massive, bright galaxies. However, faint and distant galaxies are hampered by resolution to dust spatial dust distribution. In the era of integral-field spectrographs (IFS), Balmer decrement is a useful quantity to infer the spatial extent of the dust in distant and low-mass galaxies. We conducted a study to estimate the spatial distribution of dust using the Sydney-Australian Astronomical Observatory (AAO) Multi-object Integral field spectrograph (SAMI) galaxies. Our methodology is unique to exploit the potential of IFS and using the spatial and spectral information together to study dust in galaxies of various morphological types. The spatial extent and content of dust are compared with the star-formation rate, reddening, and inclination of galaxies. We find a right correlation of dust spatial extent with the star-formation rate. The results also indicate a decrease in dust extent radius from Late Spirals to Early Spirals.

Imaging elemental distribution and ion transport in cultured cells with ion microscopy.

PubMed

Chandra, S; Morrison, G H

1985-06-28

Both elemental distribution and ion transport in cultured cells have been imaged by ion microscopy. Morphological and chemical information was obtained with a spatial resolution of approximately 0.5 micron for sodium, potassium, calcium, and magnesium in freeze-fixed, cryofractured, and freeze-dried normal rat kidney cells and Chinese hamster ovary cells. Ion transport was successfully demonstrated by imaging Na+-K+ fluxes after the inhibition of Na+- and K+ -dependent adenosine triphosphatase with ouabain. This method allows measurements of elemental (isotopic) distribution to be related to cell morphology, thereby providing the means for studying ion distribution and ion transport under different physiological, pathological, and toxicological conditions in cell culture systems.

Quantifying the morphodynamics of river restoration schemes using Unmanned Aerial Vehicles (UAVs)

NASA Astrophysics Data System (ADS)

Williams, Richard; Byrne, Patrick; Gilles, Eric; Hart, John; Hoey, Trevor; Maniatis, George; Moir, Hamish; Reid, Helen; Ves, Nikolas

2017-04-01

River restoration schemes are particularly sensitive to morphological adjustment during the first set of high-flow events that they are subjected to. Quantifying elevation change associated with morphological adjustment can contribute to improved adaptive decision making to ensure river restoration scheme objectives are achieved. To date the relatively high cost, technical demands and challenging logistics associated with acquiring repeat, high-resolution topographic surveys has resulted in a significant barrier to monitoring the three-dimensional morphodynamics of river restoration schemes. The availability of low-cost, consumer grade Unmanned Aerial Vehicles that are capable of acquiring imagery for processing using Structure-from-Motion Multi-View Stereo (SfM MVS) photogrammetry has the potential to transform the survey the morphodynamics of river restoration schemes. Application guidance does, however, need to be developed to fully exploit the advances of UAV technology and SfM MVS processing techniques. In particular, there is a need to quantify the effect of the number and spatial distribution of ground targets on vertical error. This is particularly significant because vertical errors propagate when mapping morphological change, and thus determine the evidence that is available for decision making. This presentation presents results from a study that investigated how the number and spatial distribution of targets influenced vertical error, and then used the findings to determine survey protocols for a monitoring campaign that has quantified morphological change across a number of restoration schemes. At the Swindale river restoration scheme, Cumbria, England, 31 targets were distributed across a 700 m long reach and the centre of each target was surveyed using RTK-GPS. Using the targets as General Control Points (GCPs) or checkpoints, they were divided into three different spatial patterns (centre, edge and random) and used for processing images acquired from a SenseFly Swinglet CAM UAV with a Canon IXUS 240 HS camera. Results indicate that if targets were distributed centrally then vertical distortions would be most notable in outer region of the processing domain; if an edge pattern was used then vertical errors were greatest in the central region of the processing domain; if targets were distributed randomly then errors were more evenly distributed. For this optimal random layout, vertical errors were lowest when 15 to 23 targets were used as GCPs. The best solution achieved planimetric (XY) errors of 0.006 m and vertical (Z) errors of 0.05 m. This result was used to determine target density and distribution for repeat surveys on two other restoration schemes, Whit Beck (Cumbria, England) and Allt Lorgy (Highlands, Scotland). These repeat surveys have been processed to produce DEMs of Difference (DoDs). The DoDs have been used to quantify the spatial distribution of erosion and deposition of these schemes due to high-flow events. Broader interpretation enables insight into patterns of morphological sensitivity that are related to scheme design.

Spatial and Alignment Analyses for a field of Small Volcanic Vents South of Pavonis Mons Mars

NASA Technical Reports Server (NTRS)

Bleacher, J. E.; Glaze, L. S.; Greeley, R.; Hauber, E.; Baloga, S. M.; Sakimoto, S. E. H.; Williams, D. A.; Glotch, T. D.

2008-01-01

The Tharsis province of Mars displays a variety of small volcanic vent (10s krn in diameter) morphologies. These features were identified in Mariner and Viking images [1-4], and Mars Orbiter Laser Altimeter (MOLA) data show them to be more abundant than originally observed [5,6]. Recent studies are classifying their diverse morphologies [7-9]. Building on this work, we are mapping the location of small volcanic vents (small-vents) in the Tharsis province using MOLA, Thermal Emission Imaging System, and High Resolution Stereo Camera data [10]. Here we report on a preliminary study of the spatial and alignment relationships between small-vents south of Pavonis Mons, as determined by nearest neighbor and two-point azimuth statistical analyses. Terrestrial monogenetic volcanic fields display four fundamental characteristics: 1) recurrence rates of eruptions,2 ) vent abundance, 3) vent distribution, and 4) tectonic relationships [11]. While understanding recurrence rates typically requires field measurements, insight into vent abundance, distribution, and tectonic relationships can be established by mapping of remotely sensed data, and subsequent application of spatial statistical studies [11,12], the goal of which is to link the distribution of vents to causal processes.

Mesoscale raised rim depressions (MRRDs) on Earth: A review of the characteristics, processes, and spatial distributions of analogs for Mars

USGS Publications Warehouse

Burr, D.M.; Bruno, B.C.; Lanagan, P.D.; Glaze, L.S.; Jaeger, W.L.; Soare, R.J.; Wan, Bun Tseung J.-M.; Skinner, J.A.; Baloga, S.M.

2009-01-01

Fields of mesoscale raised rim depressions (MRRDs) of various origins are found on Earth and Mars. Examples include rootless cones, mud volcanoes, collapsed pingos, rimmed kettle holes, and basaltic ring structures. Correct identification of MRRDs on Mars is valuable because different MRRD types have different geologic and/or climatic implications and are often associated with volcanism and/or water, which may provide locales for biotic or prebiotic activity. In order to facilitate correct identification of fields of MRRDs on Mars and their implications, this work provides a review of common terrestrial MRRD types that occur in fields. In this review, MRRDs by formation mechanism, including hydrovolcanic (phreatomagmatic cones, basaltic ring structures), sedimentological (mud volcanoes), and ice-related (pingos, volatile ice-block forms) mechanisms. For each broad mechanism, we present a comparative synopsis of (i) morphology and observations, (ii) physical formation processes, and (iii) published hypothesized locations on Mars. Because the morphology for MRRDs may be ambiguous, an additional tool is provided for distinguishing fields of MRRDs by origin on Mars, namely, spatial distribution analyses for MRRDs within fields on Earth. We find that MRRDs have both distinguishing and similar characteristics, and observation that applies both to their mesoscale morphology and to their spatial distribution statistics. Thus, this review provides tools for distinguishing between various MRRDs, while highlighting the utility of the multiple working hypotheses approach. ?? 2008 Elsevier Ltd.

Valley s'Asymmetric Characteristics of the Loess Plateau in Northwestern Shanxi Based on DEM

NASA Astrophysics Data System (ADS)

Duan, J.

2016-12-01

The valleys of the Loess Plateau in northwestern Shanxi show great asymmetry. This study using multi-scale DEMs, high-resolution satellite images and digital terrain analysis method, put forward a quantitative index to describe the asymmetric morphology. Several typical areas are selected to test and verify the spatial variability. Results show: (1) Considering the difference of spatial distribution, Pianguanhe basin, Xianchuanhe basin and Yangjiachuan basin are the areas where show most significant asymmetric characteristics . (2) Considering the difference of scale, the shape of large-scale valleys represents three characteristics: randomness, equilibrium and relative symmetry, while small-scale valleys show directionality and asymmetry. (3) Asymmetric morphology performs orientation, and the east-west valleys extremely obvious. Combined with field survey, its formation mechanism can be interpreted as follows :(1)Loess uneven distribution in the valleys. (2) The distribution diversities of vegetation, water , heat conditions and other factors, make a difference in water erosion capability which leads to asymmetric characteristics.

Effect of spatial distribution of wax and PEG-isocyanate on the morphology and hydrophobicity of starch films.

PubMed

Muscat, Delina; Adhikari, Raju; Tobin, Mark J; McKnight, Stafford; Wakeling, Lara; Adhikari, Benu

2014-10-13

This study proposes a novel method for improving surface hydrophobicity of glycerol plasticized high amylose (HAG) films. We used polyethylene glycol isocyanate (PEG-iso) crosslinker to link HAG and three natural waxes (beeswax, candelilla wax and carnauba wax) to produce HAG+wax+PEG-iso films. The spatial distributions of wax and PEG-iso across the thickness of these films were determined using Synchrotron-based Fourier transform infrared spectroscopy. The hydrophobicity and surface morphology of the films were determined using contact angle (CA) and scanning electron microscopic measurements, respectively. The distribution patterns of wax and the PEG-iso across the thickness of the film, and the nature of crystalline patterns formed on the surface of these films were found to be the key factors affecting surface hydrophobicity. The highest hydrophobicity (CA >90°) was created when the PEG-iso was primarily distributed in the interior of the films and a hierarchical circular pinnacle structure of solidified wax was formed on the surface. Copyright © 2014 Elsevier Ltd. All rights reserved.

Spatial distribution of filament elasticity determines the migratory behaviors of a cell

PubMed Central

Harn, Hans I-Chen; Hsu, Chao-Kai; Wang, Yang-Kao; Huang, Yi-Wei; Chiu, Wen-Tai; Lin, Hsi-Hui; Cheng, Chao-Min; Tang, Ming-Jer

2016-01-01

ABSTRACT Any cellular response leading to morphological changes is highly tuned to balance the force generated from structural reorganization, provided by actin cytoskeleton. Actin filaments serve as the backbone of intracellular force, and transduce external mechanical signal via focal adhesion complex into the cell. During migration, cells not only undergo molecular changes but also rapid mechanical modulation. Here we focus on determining, the role of spatial distribution of mechanical changes of actin filaments in epithelial, mesenchymal, fibrotic and cancer cells with non-migration, directional migration, and non-directional migration behaviors using the atomic force microscopy. We found 1) non-migratory cells only generated one type of filament elasticity, 2) cells generating spatially distributed two types of filament elasticity showed directional migration, and 3) pathologic cells that autonomously generated two types of filament elasticity without spatial distribution were actively migrating non-directionally. The demonstration of spatial regulation of filament elasticity of different cell types at the nano-scale highlights the coupling of cytoskeletal function with physical characters at the sub-cellular level, and provides new research directions for migration related disease. PMID:26919488

Spatial Variability of Co On The Scale of The Street According To Street Morphology, Car Traffic and Local Climate In Paris

NASA Astrophysics Data System (ADS)

Quenol, H.; Bridier, S.; Beltrando, G.; Frangi, J. P.

The purpose of this study is to observe CO distribution on street level according to variations of car traffic, weather situation and street morphology. The experimentation use an electronical CO sensor connected to a data logger. Two kinds of observations are carried out : - measurements along an itinerary from the n´ butte de Montmartre z to the n´ Seine z highlights the spatial variability of CO distribution according to car traffic and weather characteristics (radiativ, advectiv, cloudy, rainy) ; - measurements in fixed stations underlines the differences in concentration according the situation (in or out of buildings) and according to level of the vertical measure (from 1.5 to 10 m). This approach of pollution distribution at the street and the district scale is made possible by using low cost sensors. They allow an very fine approach of CO distribution by multiplying measurements points. All of these data are integrated in a GIS with a DEM, a cartography of building implantation and width of the streets. This study shows that the CO concentration is in relation to street morphology (width, height, topography), intensity of car traffic and local meteorology (breezes and wind channeled by street network). This method leads to the constitution of a mobil network used to produce data on horizontal and vertical CO distribution inside the n´ meshs z of the present network of pollution observation.

Validating a spatially distributed hydrological model with soil morphology data

NASA Astrophysics Data System (ADS)

Doppler, T.; Honti, M.; Zihlmann, U.; Weisskopf, P.; Stamm, C.

2014-09-01

Spatially distributed models are popular tools in hydrology claimed to be useful to support management decisions. Despite the high spatial resolution of the computed variables, calibration and validation is often carried out only on discharge time series at specific locations due to the lack of spatially distributed reference data. Because of this restriction, the predictive power of these models, with regard to predicted spatial patterns, can usually not be judged. An example of spatial predictions in hydrology is the prediction of saturated areas in agricultural catchments. These areas can be important source areas for inputs of agrochemicals to the stream. We set up a spatially distributed model to predict saturated areas in a 1.2 km2 catchment in Switzerland with moderate topography and artificial drainage. We translated soil morphological data available from soil maps into an estimate of the duration of soil saturation in the soil horizons. This resulted in a data set with high spatial coverage on which the model predictions were validated. In general, these saturation estimates corresponded well to the measured groundwater levels. We worked with a model that would be applicable for management decisions because of its fast calculation speed and rather low data requirements. We simultaneously calibrated the model to observed groundwater levels and discharge. The model was able to reproduce the general hydrological behavior of the catchment in terms of discharge and absolute groundwater levels. However, the the groundwater level predictions were not accurate enough to be used for the prediction of saturated areas. Groundwater level dynamics were not adequately reproduced and the predicted spatial saturation patterns did not correspond to those estimated from the soil map. Our results indicate that an accurate prediction of the groundwater level dynamics of the shallow groundwater in our catchment that is subject to artificial drainage would require a model that better represents processes at the boundary between the unsaturated and the saturated zone. However, data needed for such a more detailed model are not generally available. This severely hampers the practical use of such models despite their usefulness for scientific purposes.

A spatially distributed model for the assessment of land use impacts on stream temperature in small urban watersheds

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sun, Ning; Yearsley, John; Voisin, Nathalie

2015-05-15

Stream temperatures in urban watersheds are influenced to a high degree by anthropogenic impacts related to changes in landscape, stream channel morphology, and climate. These impacts can occur at small time and length scales, hence require analytical tools that consider the influence of the hydrologic regime, energy fluxes, topography, channel morphology, and near-stream vegetation distribution. Here we describe a modeling system that integrates the Distributed Hydrologic Soil Vegetation Model, DHSVM, with the semi-Lagrangian stream temperature model RBM, which has the capability to simulate the hydrology and water temperature of urban streams at high time and space resolutions, as well asmore » a representation of the effects of riparian shading on stream energetics. We demonstrate the modeling system through application to the Mercer Creek watershed, a small urban catchment near Bellevue, Washington. The results suggest that the model is able both to produce realistic streamflow predictions at fine temporal and spatial scales, and to provide spatially distributed water temperature predictions that are consistent with observations throughout a complex stream network. We use the modeling construct to characterize impacts of land use change and near-stream vegetation change on stream temperature throughout the Mercer Creek system. We then explore the sensitivity of stream temperature to land use changes and modifications in vegetation along the riparian corridor.« less

Morphology and spatial patterns of Macrotermes mounds in the SE Katanga, D.R. Congo

NASA Astrophysics Data System (ADS)

Bazirake Mujinya, Basile; Mees, Florias; Erens, Hans; Baert, Geert; Van Ranst, Eric

2015-04-01

The spatial distribution patterns and morphological characteristics of Macrotermes falciger mounds were investigated in the Lubumbashi area, D.R. Congo. Examination of the spatial patterns of M. falciger mounds on high resolution satellite images reveals a mean areal number density of 2.9 ± 0.4 mounds ha-1. The high relative number of inactive mounds in the region, along with their regular distribution pattern, suggests that current termite mound occurrences are largely palaeostructures. Mound positions in the habitat are consistent with intraspecific competition rather than soil and substrate characteristics as controlling factor. Detailed morphological description of five deep termite-mound profiles (~7 m height/depth) shows that carbonate pedofeatures are present in all studied profiles, in contrast to the control soils. They mainly occur in the form of soft powdery masses, nodules and coatings on ped faces, all clearly pedogenic. Carbonate coatings occur mainly between 1 m above the soil surface and 1 m below that level in all mound profiles. Carbonate nodules do show a different distribution pattern at each site. Furthermore, when the studied profiles are considered to represent a toposequence, the stone layer occurs at greater depth in topographically low areas compared to crest and slope positions, which is mainly conditioned by erosion. The clay content of epigeal mounds increases from the summit to the toe slope, which can be largely related to differences in parent material. The Mn-Fe oxide concentrations occurring in all studied termite mound profiles reflect a seasonally high perched water table beneath the mound, which is more pronounced at the lower slope positions.

Morphology of Dwarf Galaxies in Isolated Satellite Systems

NASA Astrophysics Data System (ADS)

Ann, Hong Bae

2017-08-01

The environmental dependence of the morphology of dwarf galaxies in isolated satellite systems is analyzed to understand the origin of the dwarf galaxy morphology using the visually classified morphological types of 5836 local galaxies with z ≲ 0.01. We consider six sub-types of dwarf galaxies, dS0, dE, dE_{bc}, dSph, dE_{blue}, and dI, of which the first four sub-types are considered as early-type and the last two as late-type. The environmental parameters we consider are the projected distance from the host galaxy (r_{p}), local and global background densities, and the host morphology. The spatial distributions of dwarf satellites of early-type galaxies are much different from those of dwarf satellites of late-type galaxies, suggesting the host morphology combined with r_{p} plays a decisive role on the morphology of the dwarf satellite galaxies. The local and global background densities play no significant role on the morphology of dwarfs in the satellite systems hosted by early-type galaxies. However, in the satellite system hosted by late-type galaxies, the global background densities of dE and dSph satellites are significantly different from those of dE_{bc}, dE_{blue}, and dI satellites. The blue-cored dwarf satellites (dE_{bc}) of early-type galaxies are likely to be located at r_{p} > 0.3 Mpc to keep their cold gas from the ram pressure stripping by the hot corona of early-type galaxies. The spatial distribution of dE_{bc} satellites of early-type galaxies and their global background densities suggest that their cold gas is intergalactic material accreted before they fall into the satellite systems.

Cerebral morphology and dopamine D2/D3receptor distribution in humans: A combined [18F]fallypride and voxel-based morphometry study

PubMed Central

Woodward, Neil D.; Zald, David H.; Ding, Zhaohua; Riccardi, Patrizia; Ansari, M. Sib; Baldwin, Ronald M.; Cowan, Ronald L.; Li, Rui; Kessler, Robert M.

2009-01-01

The relationship between cerebral morphology and the expression of dopamine receptors has not been extensively studied in humans. Elucidation of such relationships may have important methodological implications for clinical studies of dopamine receptor ligand binding differences between control and patient groups. The association between cerebral morphology and dopamine receptor distribution was examined in 45 healthy subjects who completed T1-weighted structural MRI and PET scanning with the D2/D3 ligand [18F]fallypride. Optimized voxel-based morphometry was used to create grey matter volume and density images. Grey matter volume and density images were correlated with binding potential (BPND) images on a voxel-by-voxel basis using the Biological Parametric Mapping toolbox. Associations between cerebral morphology and BPND were also examined for selected regions-of-interest (ROIs) after spatial normalization. Voxel-wise analyses indicated that grey matter volume and density positively correlated with BPND throughout the midbrain, including the substantia nigra. Positive correlations were observed in medial cortical areas, including anterior cingulate and medial prefrontal cortex, and circumscribed regions of the temporal, frontal, and parietal lobes. ROI analyses revealed significant positive correlations between BPND and cerebral morphology in the caudate, thalamus, and amygdala. Few negative correlations between morphology and BPND were observed. Overall, grey matter density appeared more strongly correlated with BPND than grey matter volume. Cerebral morphology, particularly grey matter density, correlates with [18F]fallypride BPND in a regionally specific manner. Clinical studies comparing dopamine receptor availability between clinical and control groups may benefit by accounting for potential differences in cerebral morphology that exist even after spatial normalization. PMID:19457373

Cerebral morphology and dopamine D2/D3 receptor distribution in humans: a combined [18F]fallypride and voxel-based morphometry study.

PubMed

Woodward, Neil D; Zald, David H; Ding, Zhaohua; Riccardi, Patrizia; Ansari, M Sib; Baldwin, Ronald M; Cowan, Ronald L; Li, Rui; Kessler, Robert M

2009-05-15

The relationship between cerebral morphology and the expression of dopamine receptors has not been extensively studied in humans. Elucidation of such relationships may have important methodological implications for clinical studies of dopamine receptor ligand binding differences between control and patient groups. The association between cerebral morphology and dopamine receptor distribution was examined in 45 healthy subjects who completed T1-weighted structural MRI and PET scanning with the D(2)/D(3) ligand [(18)F]fallypride. Optimized voxel-based morphometry was used to create grey matter volume and density images. Grey matter volume and density images were correlated with binding potential (BP(ND)) images on a voxel-by-voxel basis using the Biological Parametric Mapping toolbox. Associations between cerebral morphology and BP(ND) were also examined for selected regions-of-interest (ROIs) after spatial normalization. Voxel-wise analyses indicated that grey matter volume and density positively correlated with BP(ND) throughout the midbrain, including the substantia nigra. Positive correlations were observed in medial cortical areas, including anterior cingulate and medial prefrontal cortex, and circumscribed regions of the temporal, frontal, and parietal lobes. ROI analyses revealed significant positive correlations between BP(ND) and cerebral morphology in the caudate, thalamus, and amygdala. Few negative correlations between morphology and BP(ND) were observed. Overall, grey matter density appeared more strongly correlated with BP(ND) than grey matter volume. Cerebral morphology, particularly grey matter density, correlates with [(18)F]fallypride BP(ND) in a regionally specific manner. Clinical studies comparing dopamine receptor availability between clinical and control groups may benefit by accounting for potential differences in cerebral morphology that exist even after spatial normalization.

Lava Morphology Classification of a Fast-Spreading Ridge Using Deep-Towed Sonar Data: East Pacific Rise

NASA Astrophysics Data System (ADS)

Meyer, J.; White, S.

2005-05-01

Classification of lava morphology on a regional scale contributes to the understanding of the distribution and extent of lava flows at a mid-ocean ridge. Seafloor classification is essential to understand the regional undersea environment at midocean ridges. In this study, the development of a classification scheme is found to identify and extract textural patterns of different lava morphologies along the East Pacific Rise using DSL-120 side-scan and ARGO camera imagery. Application of an accurate image classification technique to side-scan sonar allows us to expand upon the locally available visual ground reference data to make the first comprehensive regional maps of small-scale lava morphology present at a mid-ocean ridge. The submarine lava morphologies focused upon in this study; sheet flows, lobate flows, and pillow flows; have unique textures. Several algorithms were applied to the sonar backscatter intensity images to produce multiple textural image layers useful in distinguishing the different lava morphologies. The intensity and spatially enhanced images were then combined and applied to a hybrid classification technique. The hybrid classification involves two integrated classifiers, a rule-based expert system classifier and a machine learning classifier. The complementary capabilities of the two integrated classifiers provided a higher accuracy of regional seafloor classification compared to using either classifier alone. Once trained, the hybrid classifier can then be applied to classify neighboring images with relative ease. This classification technique has been used to map the lava morphology distribution and infer spatial variability of lava effusion rates along two segments of the East Pacific Rise, 17 deg S and 9 deg N. Future use of this technique may also be useful for attaining temporal information. Repeated documentation of morphology classification in this dynamic environment can be compared to detect regional seafloor change.

Multistage Spatial Property Based Segmentation for Quantification of Fluorescence Distribution in Cells

NASA Astrophysics Data System (ADS)

Zhang, Guangyun; Jia, Xiuping; Pham, Tuan D.; Crane, Denis I.

2010-01-01

The interpretation of the distribution of fluorescence in cells is often by simple visualization of microscope-derived images for qualitative studies. In other cases, however, it is desirable to be able to quantify the distribution of fluorescence using digital image processing techniques. In this paper, the challenges of fluorescence segmentation due to the noise present in the data are addressed. We report that intensity measurements alone do not allow separation of overlapping data between target and background. Consequently, spatial properties derived from neighborhood profile were included. Mathematical Morphological operations were implemented for cell boundary extraction and a window based contrast measure was developed for fluorescence puncta identification. All of these operations were applied in the proposed multistage processing scheme. The testing results show that the spatial measures effectively enhance the target separability.

Spatial variability in acoustic backscatter as an indicator of tissue homogenate production in pulsed cavitational ultrasound therapy.

PubMed

Parsons, Jessica E; Cain, Charles A; Fowlkes, J Brian

2007-03-01

Spatial variability in acoustic backscatter is investigated as a potential feedback metric for assessment of lesion morphology during cavitation-mediated mechanical tissue disruption ("histotripsy"). A 750-kHz annular array was aligned confocally with a 4.5 MHz passive backscatter receiver during ex vivo insonation of porcine myocardium. Various exposure conditions were used to elicit a range of damage morphologies and backscatter characteristics [pulse duration = 14 micros, pulse repetition frequency (PRF) = 0.07-3.1 kHz, average I(SPPA) = 22-44 kW/cm2]. Variability in backscatter spatial localization was quantified by tracking the lag required to achieve peak correlation between sequential RF A-lines received. Mean spatial variability was observed to be significantly higher when damage morphology consisted of mechanically disrupted tissue homogenate versus mechanically intact coagulation necrosis (2.35 +/- 1.59 mm versus 0.067 +/- 0.054 mm, p < 0.025). Statistics from these variability distributions were used as the basis for selecting a threshold variability level to identify the onset of homogenate formation via an abrupt, sustained increase in spatially dynamic backscatter activity. Specific indices indicative of the state of the homogenization process were quantified as a function of acoustic input conditions. The prevalence of backscatter spatial variability was observed to scale with the amount of homogenate produced for various PRFs and acoustic intensities.

Spatial distributions of Pseudomonas fluorescens colony variants in mixed-culture biofilms.

PubMed

Workentine, Matthew L; Wang, Siyuan; Ceri, Howard; Turner, Raymond J

2013-07-28

The emergence of colony morphology variants in structured environments is being recognized as important to both niche specialization and stress tolerance. Pseudomonas fluorescens demonstrates diversity in both its natural environment, the rhizosphere, and in laboratory grown biofilms. Sub-populations of these variants within a biofilm have been suggested as important contributors to antimicrobial stress tolerance given their altered susceptibility to various agents. As such it is of interest to determine how these variants might be distributed in the biofilm environment. Here we present an analysis of the spatial distribution of Pseudomonas fluorescens colony morphology variants in mixed-culture biofilms with the wildtype phenotype. These findings reveal that two variant colony morphotypes demonstrate a significant growth advantage over the wildtype morphotype in the biofilm environment. The two variant morphotypes out-grew the wildtype across the entire biofilm and this occurred within 24 h and was maintained through to 96 h. This competitive advantage was not observed in homogeneous broth culture. The significant advantage that the variants demonstrate in biofilm colonization over the wildtype denotes the importance of this phenotype in structured environments.

Spatial height directed microfluidic synthesis of transparent inorganic upconversion nano film

NASA Astrophysics Data System (ADS)

Liu, Xiaoxia; Zhu, Cheng; Liao, Wei; Jin, Junyang; Ni, Yaru; Lu, Chunhua; Xu, Zhongzi

2017-11-01

A microfluidic-based synthesis of an inorganic upconversion nano film has been developed with a large area of dense-distributed NaYF4 crystal grains in a silica glass micro-reactor and the film exhibits high transparence, strong upconversion luminescence and robust adhesion with the substrate. The spatial heights of micro-reactors are tuned between 31 and 227 mm, which can regulate flow regimes. The synergistic effect of spatial height and fluid regime is put forward, which influences diffusion paths and assembly ways of different precursor molecules and consequently directs final distributions and morphologies of crystal grains, as well as optical properties due to diversity of surface and thickness of films. The spatial height of 110 mm is advantageous for high transmittance of upconversion film due to the flat surface and appropriate film thickness of 67 nm. The height of 150 mm is in favor of uniform distribution of upconversion fluorescence and achieving the strongest fluorescence due to minimized optical loss. Such a transparent upconversion film with a large area of uniform distribution is promising to promote the application of upconversion materials and spatial height directed microfluidic regime have a certain significance on many microfluidic synthesis.

Statistical analysis of dendritic spine distributions in rat hippocampal cultures

PubMed Central

2013-01-01

Background Dendritic spines serve as key computational structures in brain plasticity. Much remains to be learned about their spatial and temporal distribution among neurons. Our aim in this study was to perform exploratory analyses based on the population distributions of dendritic spines with regard to their morphological characteristics and period of growth in dissociated hippocampal neurons. We fit a log-linear model to the contingency table of spine features such as spine type and distance from the soma to first determine which features were important in modeling the spines, as well as the relationships between such features. A multinomial logistic regression was then used to predict the spine types using the features suggested by the log-linear model, along with neighboring spine information. Finally, an important variant of Ripley’s K-function applicable to linear networks was used to study the spatial distribution of spines along dendrites. Results Our study indicated that in the culture system, (i) dendritic spine densities were "completely spatially random", (ii) spine type and distance from the soma were independent quantities, and most importantly, (iii) spines had a tendency to cluster with other spines of the same type. Conclusions Although these results may vary with other systems, our primary contribution is the set of statistical tools for morphological modeling of spines which can be used to assess neuronal cultures following gene manipulation such as RNAi, and to study induced pluripotent stem cells differentiated to neurons. PMID:24088199

Characteristics of zircons from volcanic ash-derived tonsteins in Late Permian coal fields of eastern Yunnan, China

USGS Publications Warehouse

Zhou, Y.; Ren, Y.; Tang, D.; Bohor, B.

1994-01-01

Kaolinitic tonsteins of altered synsedimentary volcanic ash-fall origin are well developed in the Late Permian coal-bearing formations of eastern Yunnan Province. Because of their unique origin, wide lateral extent, relatively constant thickness and sharp contacts with enclosing strata, great importance has been attached to these isochronous petrographic markers. In order to compare tonsteins with co-existing, non-cineritic claystones and characterize the individuality of tonsteins from different horizons for coal bed correlation, a semi-quantitative method was developed that is based on statistical analyses of the concentration and morphology of zircons and their spatial distribution patterns. This zircon-based analytical method also serves as a means for reconstructing volcanic ash-fall dispersal patterns. The results demonstrate that zircons from claystones of two different origins (i.e., tonstein and non-cineritic claystone) differ greatly in their relative abundances, crystal morphologies and spatial distribution patterns. Tonsteins from the same area but from different horizons are characterized by their own unique statistical patterns in terms of zircon concentration values and morphologic parameters (crystal length, width and the ratio of these values), thus facilitating stratigraphic correlation. Zircons from the same tonstein horizon also show continuous variation in these statistical patterns as a function of areal distribution, making it possible to identify the main path and direction in which the volcanic source materials were transported by prevailing winds. ?? 1994.

A simple distributed sediment delivery approach for rural catchments

NASA Astrophysics Data System (ADS)

Reid, Lucas; Scherer, Ulrike

2014-05-01

The transfer of sediments from source areas to surface waters is a complex process. In process based erosion models sediment input is thus quantified by representing all relevant sub processes such as detachment, transport and deposition of sediment particles along the flow path to the river. A successful application of these models requires, however, a large amount of spatially highly resolved data on physical catchment characteristics, which is only available for a few, well examined small catchments. For the lack of appropriate models, the empirical Universal Soil Loss Equation (USLE) is widely applied to quantify the sediment production in meso to large scale basins. As the USLE provides long-term mean soil loss rates, it is often combined with spatially lumped models to estimate the sediment delivery ratio (SDR). In these models, the SDR is related to data on morphological characteristics of the catchment such as average local relief, drainage density, proportion of depressions or soil texture. Some approaches include the relative distance between sediment source areas and the river channels. However, several studies showed that spatially lumped parameters describing the morphological characteristics are only of limited value to represent the factors of influence on sediment transport at the catchment scale. Sediment delivery is controlled by the location of the sediment source areas in the catchment and the morphology along the flow path to the surface water bodies. This complex interaction of spatially varied physiographic characteristics cannot be adequately represented by lumped morphological parameters. The objective of this study is to develop a simple but spatially distributed approach to quantify the sediment delivery ratio by considering the characteristics of the flow paths in a catchment. We selected a small catchment located in in an intensively cultivated loess region in Southwest Germany as study area for the development of the SDR approach. The flow pathways were extracted in a geographic information system. Then the sediment delivery ratio for each source area was determined using an empirical approach considering the slope, morphology and land use properties along the flow path. As a benchmark for the calibration of the model parameters we used results of a detailed process based erosion model available for the study area. Afterwards the approach was tested in larger catchments located in the same loess region.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Chuang, Chihpin; Singh, Dileep; Kenesei, Peter

The size and morphology of the graphite particles play a crucial role in determining various mechanical and thermal properties of cast iron. In the present study, we utilized high-energy synchrotron X-ray tomography to perform quantitative 3D-characterization of the distribution of graphite particles in high-strength compacted graphite iron (CGI). The size, shape, and spatial connectivity of graphite were examined. The analysis reveals that the compacted graphite can grow with a coral-tree-like morphology and span several hundred microns in the iron matrix.

Identification of Volcanic Landforms and Processes on Earth and Mars using Geospatial Analysis (Invited)

NASA Astrophysics Data System (ADS)

Fagents, S. A.; Hamilton, C. W.

2009-12-01

Nearest neighbor (NN) analysis enables the identification of landforms using non-morphological parameters and can be useful for constraining the geological processes contributing to observed patterns of spatial distribution. Explosive interactions between lava and water can generate volcanic rootless cone (VRC) groups that are well suited to geospatial analyses because they consist of a large number of landforms that share a common formation mechanism. We have applied NN analysis tools to quantitatively compare the spatial distribution of VRCs in the Laki lava flow in Iceland to analogous landforms in the Tartarus Colles Region of eastern Elysium Planitia, Mars. Our results show that rootless eruption sites on both Earth and Mars exhibit systematic variations in spatial organization that are related to variations in the distribution of resources (lava and water) at different scales. Field observations in Iceland reveal that VRC groups are composite structures formed by the emplacement of chronologically and spatially distinct domains. Regionally, rootless cones cluster into groups and domains, but within domains NN distances exhibit random to repelled distributions. This suggests that on regional scales VRCs cluster in locations that contain sufficient resources, whereas on local scales rootless eruption sites tend to self-organize into distributions that maximize the utilization of limited resources (typically groundwater). Within the Laki lava flow, near-surface water is abundant and pre-eruption topography appears to exert the greatest control on both lava inundation regions and clustering of rootless eruption sites. In contrast, lava thickness appears to be the controlling factor in the formation of rootless eruption sites in the Tartarus Colles Region. A critical lava thickness may be required to initiate rootless eruptions on Mars because the lava flows must contain sufficient heat for transferred thermal energy to reach the underlying cryosphere and volatilize buried ground ice. In both environments, the spatial distribution of rootless eruption sites on local scales may either be random, which indicates that rootless eruption sites form independently of one another, or repelled, which implies resource limitation. Where competition for limited groundwater causes rootless eruption sites to develop greater than random NN separation, rootless eruption sites can be modeled as a system of pumping wells that extract water from a shared aquifer, thereby generating repelled distributions due to non-initiation or early cessation of rootless explosive activity at sites with insufficient access to groundwater. Thus statistical NN analyses can be combined with field observations and remote sensing to obtain information about self-organization processes within geological systems and the effects of environmental resource limitation on the spatial distribution of volcanic landforms. NN analyses may also be used to quantitatively compare the spatial distribution of landforms in different planetary environments and for supplying non-morphological evidence to discriminate between feature identities and geological formation mechanisms.

AIRWAY IDENTIFICATION WITHIN PLANAR GAMMA CAMERA IMAGES USING COMPUTER MODELS OF LUNG MORPHOLOGY

EPA Science Inventory

The quantification of inhaled aerosols could be improved if a more comprehensive assessment of their spatial distribution patterns among lung airways were obtained. A common technique for quantifying particle deposition in human lungs is with planar gamma scintigraphy. However, t...

A COMPUTER MODEL OF LUNG MORPHOLOGY TO ANALYZE SPECT IMAGES

EPA Science Inventory

Measurement of the three-dimensional (3-D) spatial distribution of aerosol deposition can be performed using Single Photon Emission Computed Tomography (SPECT). The advantage of using 3-D techniques over planar gamma imaging is that deposition patterns can be related to real lun...

Scale-free networks of the earth’s surface

NASA Astrophysics Data System (ADS)

Liu, Gang; He, Jing; Luo, Kaitian; Gao, Peichao; Ma, Lei

2016-06-01

Studying the structure of real complex systems is of paramount importance in science and engineering. Despite our understanding of lots of real systems, we hardly cognize our unique living environment — the earth. The structural complexity of the earth’s surface is, however, still unknown in detail. Here, we define the modeling of graph topology for the earth’s surface, using the satellite images of the earth’s surface under different spatial resolutions derived from Google Earth. We find that the graph topologies of the earth’s surface are scale-free networks regardless of the spatial resolutions. For different spatial resolutions, the exponents of power-law distributions and the modularity are both quite different; however, the average clustering coefficient is approximately equal to a constant. We explore the morphology study of the earth’s surface, which enables a comprehensive understanding of the morphological feature of the earth’s surface.

The distribution of early- and late-type galaxies in the Coma cluster

NASA Technical Reports Server (NTRS)

Doi, M.; Fukugita, M.; Okamura, S.; Turner, E. L.

1995-01-01

The spatial distribution and the morohology-density relation of Coma cluster galaxies are studied using a new homogeneous photmetric sample of 450 galaxies down to B = 16.0 mag with quantitative morphology classification. The sample covers a wide area (10 deg X 10 deg), extending well beyond the Coma cluster. Morphological classifications into early- (E+SO) and late-(S) type galaxies are made by an automated algorithm using simple photometric parameters, with which the misclassification rate is expected to be approximately 10% with respect to early and late types given in the Third Reference Catalogue of Bright Galaxies. The flattened distribution of Coma cluster galaxies, as noted in previous studies, is most conspicuously seen if the early-type galaxies are selected. Early-type galaxies are distributed in a thick filament extended from the NE to the WSW direction that delineates a part of large-scale structure. Spiral galaxies show a distribution with a modest density gradient toward the cluster center; at least bright spiral galaxies are present close to the center of the Coma cluster. We also examine the morphology-density relation for the Coma cluster including its surrounding regions.

Effect of sub-pore scale morphology of biological deposits on porous media flow properties

NASA Astrophysics Data System (ADS)

Ghezzehei, T. A.

2012-12-01

Biological deposits often influence fluid flow by altering the pore space morphology and related hydrologic properties such as porosity, water retention characteristics, and permeability. In most coupled-processes models changes in porosity are inferred from biological process models using mass-balance. The corresponding evolution of permeability is estimated using (semi-) empirical porosity-permeability functions such as the Kozeny-Carman equation or power-law functions. These equations typically do not account for the heterogeneous spatial distribution and morphological irregularities of the deposits. As a result, predictions of permeability evolution are generally unsatisfactory. In this presentation, we demonstrate the significance of pore-scale deposit distribution on porosity-permeability relations using high resolution simulations of fluid flow through a single pore interspersed with deposits of varying morphologies. Based on these simulations, we present a modification to the Kozeny-Carman model that accounts for the shape of the deposits. Limited comparison with published experimental data suggests the plausibility of the proposed conceptual model.

Spatial Distribution of Lead Iodide and Local Passivation on Organo-Lead Halide Perovskite.

PubMed

Chen, Sheng; Wen, Xiaoming; Yun, Jae S; Huang, Shujuan; Green, Martin; Jeon, Nam Joong; Yang, Woon Seok; Noh, Jun Hong; Seo, Jangwon; Seok, Sang Il; Ho-Baillie, Anita

2017-02-22

We identify nanoscale spatial distribution of PbI 2 on the (FAPbI 3 ) 0.85 (MAPbBr 3 ) 0.15 perovskite thin film and investigate the local passivation effect using confocal based optical microscopy of steady state and time-resolved photoluminescence (PL). Different from a typical scanning electron microscope (SEM) morphology study, confocal based PL spectroscopy and microscopy allow researchers to map the morphologies of both perovskite and PbI 2 grains simultaneously, by selectively detecting their characteristic fluorescent bands using band-pass filters. In this work, we compare the perovskite samples without and with excess PbI 2 incorporation and unambiguously reveal PbI 2 distribution for the PbI 2 -rich sample. In addition, using the nanoscale time-resolved PL technique we show that the PbI 2 -rich regions exhibit longer lifetime due to suppressed defect trapping, compared to the PbI 2 -poor regions. The measurement on the PbI 2 -rich sample indicates that the passivation effect of PbI 2 in perovskite film is effective, especially in localized regions. Hence, this finding is important for further improvement of the solar cells by considering the strategy of excess PbI 2 incorporation.

Distribution and morphology of growth anomalies in Acropora from the Indo-Pacific

USGS Publications Warehouse

Work, Thierry M.; Aeby, Greta S.; Coles, Steve L.

2008-01-01

We assessed the distribution and prevalence of growth anomalies (GAs) in Acropora from French Frigate Shoals (Hawaii, USA), Johnston Atoll and Tutuila (American Samoa), developed a nomenclature for gross morphology, characterized GAs at the cellular level and obtained preliminary indices of their spatial patterns and progression within coral colonies. Acropora GAs were found in all 3 regions, but the distribution, variety and prevalence of Acropora GAs was highest in American Samoa. GAs were grouped into 7 gross morphologies (exophytic, bosselated, crateriform, nodular, vermiform, fimbriate or annular). On histology, GAs consisted of hyperplastic basal body wall (calicodermis, mesoglea and gastrodermis apposed to skeleton) with 3 distinct patterns of necrosis. There was no evidence of anaplasia or mitotic figures (common but not necessarily required morphologic indicators of neoplasia). Compared to normal tissues, GAs had significantly fewer polyps, zooxanthellae within the gastrodermis of the coenenchyme, mesenterial filaments and gonads but significantly more necrosis. On 2 colonies with GAs monitored at 2 points over 11 mo, numbers of GAs per colony increased from 0.9 to 3 times the original number seen, and significant clustering of GAs occurred within colonies. The evidence of GAs being true neoplasias (tumors) is mixed, so a cautionary approach is urged in use of morphologic terminology.

Distribution and morphology of growth anomalies in Acropora from the Indo-Pacific.

PubMed

Work, Thierry M; Aeby, Greta S; Coles, Steve L

2008-01-24

We assessed the distribution and prevalence of growth anomalies (GAs) in Acropora from French Frigate Shoals (Hawaii, USA), Johnston Atoll and Tutuila (American Samoa), developed a nomenclature for gross morphology, characterized GAs at the cellular level and obtained preliminary indices of their spatial patterns and progression within coral colonies. Acropora GAs were found in all 3 regions, but the distribution, variety and prevalence of Acropora GAs was highest in American Samoa. GAs were grouped into 7 gross morphologies (exophytic, bosselated, crateriform, nodular, vermiform, fimbriate or annular). On histology, GAs consisted of hyperplastic basal body wall (calicodermis, mesoglea and gastrodermis apposed to skeleton) with 3 distinct patterns of necrosis. There was no evidence of anaplasia or mitotic figures (common but not necessarily required morphologic indicators of neoplasia). Compared to normal tissues, GAs had significantly fewer polyps, zooxanthellae within the gastrodermis of the coenenchyme, mesenterial filaments and gonads but significantly more necrosis. On 2 colonies with GAs monitored at 2 points over 11 mo, numbers of GAs per colony increased from 0.9 to 3 times the original number seen, and significant clustering of GAs occurred within colonies. The evidence of GAs being true neoplasias (tumors) is mixed, so a cautionary approach is urged in use of morphologic terminology.

Morphology and mechanism of the very large dunes in the tidal reach of the Yangtze River, China

NASA Astrophysics Data System (ADS)

Shuwei, Zheng; Heqin, Cheng; Shuaihu, Wu; Shengyu, Shi; Wei, Xu; Quanping, Zhou; Yuehua, Jiang

2017-05-01

High-resolution multibeam data was used to interpret the surface morphology of very large dunes (VLDs) in the tidal reach of the Yangtze River, China. These VLDs can be divided into three categories according to their surface morphological characteristics. (1) VLDs-I: those with a smooth surface and cross-section; (2) VLDs-II: those accompanied by secondary dunes; (3) VLDs-III: those accompanied by secondary dunes and numerous elliptical pits. Parameters and spatial distribution of VLDs, and bed surface sediment were analyzed in the laboratory. Overall, channel morphology is an important factor affecting the development of VLDs, and channels with narrow and straight and certain water surface slope are facilitating the development of VLDs by constraining stream power. Meanwhile, distribution density of VLDs depicts a decreasing trend from Chizhou towards the estuary, are probably influenced by channel morphology and width. Associated pits in VLDs-III change the 3D dune morphology by distributing in secondary dunes as beads. The Three Gorges Dam project (TGP) leads to the bed surface sediment activity frequently and leads to the riverbed surface sediment coarsens, which promotes the further development of dunes. Moreover, other human activities, such as river regulation project, sand mining and Deep Water Channel Regulation Project have changed the regional river boundary conditions and hydrodynamic conditions are influential on the development of VLDs.

Temporal and spatial variability in thalweg profiles of a gravel-bed river

USGS Publications Warehouse

Madej, Mary Ann

1999-01-01

This study used successive longitudinal thalweg profiles in gravel-bed rivers to monitor changes in bed topography following floods and associated large sediment inputs. Variations in channel bed elevations, distributions of residual water depths, percentage of channel length occupied by riffles, and a spatial autocorrelation coefficient (Moran's I) were used to quantify changes in morphological diversity and spatial structure in Redwood Creek basin, northwestern California. Bed topography in Redwood Creek and its major tributaries consists primarily of a series of pools and riffles. The size, frequency and spatial distribution of the pools and riffles have changed significantly during the past 20 years. Following large floods and high sediment input in Redwood Creek and its tributaries in 1975, variation in channel bed elevations was low and the percentage of the channel length occupied by riffles was high. Over the next 20 years, variation in bed elevations increased while the length of channel occupied by riffles decreased. An index [(standard deviation of residual water depth/bankfull depth) × 100] was developed to compare variations in bed elevation over a range of stream sizes, with a higher index being indicative of greater morphological diversity. Spatial autocorrelation in the bed elevation data was apparent at both fine and coarse scales in many of the thalweg profiles and the observed spatial pattern of bed elevations was found to be related to the dominant channel material and the time since disturbance. River reaches in which forced pools dominated, and in which large woody debris and bed particles could not be easily mobilized, exhibited a random distribution of bed elevations. In contrast, in reaches where alternate bars dominated, and both wood and gravel were readily transported, regularly spaced bed topography developed at a spacing that increased with time since disturbance. This pattern of regularly spaced bed features was reversed following a 12-year flood when bed elevations became more randomly arranged.

Analysis of the spatial distribution of prostate cancer obtained from histopathological images

NASA Astrophysics Data System (ADS)

Diaz, Kristians; Castaneda, Benjamin; Montero, Maria Luisa; Yao, Jorge; Joseph, Jean; Rubens, Deborah; Parker, Kevin J.

2013-03-01

Understanding the spatial distribution of prostate cancer and how it changes according to prostate specific antigen (PSA) values, Gleason score, and other clinical parameters may help comprehend the disease and increase the overall success rate of biopsies. This work aims to build 3D spatial distributions of prostate cancer and examine the extent and location of cancer as a function of independent clinical parameters. The border of the gland and cancerous regions from wholemount histopathological images are used to reconstruct 3D models showing the localization of tumor. This process utilizes color segmentation and interpolation based on mathematical morphological distance. 58 glands are deformed into one prostate atlas using a combination of rigid, affine, and b-spline deformable registration techniques. Spatial distribution is developed by counting the number of occurrences in a given position in 3D space from each registered prostate cancer. Finally a difference between proportions is used to compare different spatial distributions. Results show that prostate cancer has a significant difference (SD) in the right zone of the prostate between populations with PSA greater and less than 5ng/ml. Age does not have any impact in the spatial distribution of the disease. Positive and negative capsule-penetrated cases show a SD in the right posterior zone. There is SD in almost all the glands between cases with tumors larger and smaller than 10% of the whole prostate. A larger database is needed to improve the statistical validity of the test. Finally, information from whole-mount histopathological images may provide better insight into prostate cancer.

Geological Mapping of Impact Melt Deposits at Lunar Complex Craters: New Insights into Morphological Diversity, Distribution and the Cratering Process

NASA Astrophysics Data System (ADS)

Dhingra, D.; Head, J. W., III; Pieters, C. M.

2014-12-01

We have completed high resolution geological mapping of impact melt deposits at the young lunar complex craters (<1 billion years) Copernicus, Jackson and Tycho using data from recent missions. Crater floors being the largest repository of impact melt, we have mapped their morphological diversity expressed in terms of varied surface texture, albedo, character and occurrence of boulder units as well as relative differences in floor elevation. Examples of wall and rim impact melt units and their relation to floor units have also been mapped. Among the distinctive features of these impact melt deposits are: 1) Impact Melt Wave Fronts: These are extensive (sometimes several kilometers in length) and we have documented their occurrence and distribution in different parts of the crater floor at Jackson and Tycho. These features emphasize melt mobility and style of emplacement during the modification stage of the craters. 2) Variations in Floor Elevations: Spatially extensive and coherent sections of crater floors have different elevations at all the three craters. The observed elevation differences could be caused by subsidence due to cooling of melt and/or structural failure, together with a contribution from regional slope. 3) Melt-Covered Megablocks: We also observe large blocks/rock-fragments (megablocks) covered in impact melt, which could be sections of collapsed wall or in some cases, subdued sections of central peaks. 4) Melt-Covered Central Peaks: Impact melt has also been mapped on the central peaks but varies in spatial extent among the craters. The presence of melt on peaks must be taken into account when interpreting peak mineralogy as exposures of deeper crust. 5) Boulder Distribution: Interesting trends are observed in the distribution of boulder units of various sizes; some impact melt units have spatially extensive boulders, while boulder distribution is very scarce in other units on the floor. We interpret these distributions to be influenced by a) the differential collapse of the crater walls during the modification stage, and b) the amount of relative melt volume retained in different parts of the crater floor. These observations provide important documentation of the morphological diversity and better understanding of the emplacement and final distribution of impact melt deposits.

Morphology, Spatial Distribution, and Concentration of Flame Retardants in Consumer Products and Environmental Dusts using Scanning Electron Microscopy and Raman Micro-spectroscopy

PubMed Central

WAGNER, JEFF; GHOSAL, SUTAPA; WHITEHEAD, TODD; METAYER, CATHERINE

2013-01-01

We characterized flame retardant (FR) morphologies and spatial distributions in 7 consumer products and 7 environmental dusts to determine their implications for transfer mechanisms, human exposure, and the reproducibility of gas chromatography-mass spectrometry (GC-MS) dust measurements. We characterized individual particles using scanning electron microscopy / energy dispersive x-ray spectroscopy (SEM/EDS) and Raman micro-spectroscopy (RMS). Samples were screened for the presence of 3 FR constituents (bromine, phosphorous, non-salt chlorine) and 2 metal synergists (antimony and bismuth). Subsequent analyses of select samples by RMS enabled molecular identification of the FR compounds and matrix materials. The consumer products and dust samples possessed FR elemental weight percents of up to 36% and 31%, respectively. We identified 24 FR-containing particles in the dust samples and classified them into 9 types based on morphology and composition. We observed a broad range of morphologies for these FR-containing particles, suggesting FR transfer to dust via multiple mechanisms. We developed an equation to describe the heterogeneity of FR-containing particles in environmental dust samples. The number of individual FR-containing particles expected in a 1-mg dust sample with a FR concentration of 100 ppm ranged from <1 to >1000 particles. The presence of rare, high-concentration bromine particles was correlated with decabromodiphenyl ether concentrations obtained via GC-MS. When FRs are distributed heterogeneously in highly concentrated dust particles, human exposure to FRs may be characterized by high transient exposures interspersed by periods of low exposure, and GC-MS FR concentrations may exhibit large variability in replicate subsamples. Current limitations of this SEM/EDS technique include potential false negatives for volatile and chlorinated FRs and greater quantitation uncertainty for brominated FR in aluminum-rich matrices. PMID:23739093

Polymorphic mountain whitefish (Prosopium williamsoni) in a coastal riverscape: size class assemblages, distribution, and habitat associations

USGS Publications Warehouse

Starr, James C.; Torgersen, Christian E.

2015-01-01

We compared the assemblage structure, spatial distributions, and habitat associations of mountain whitefish (Prosopium williamsoni) morphotypes and size classes. We hypothesised that morphotypes would have different spatial distributions and would be associated with different habitat features based on feeding behaviour and diet. Spatially continuous sampling was conducted over a broad extent (29 km) in the Calawah River, WA (USA). Whitefish were enumerated via snorkelling in three size classes: small (10–29 cm), medium (30–49 cm), and large (≥50 cm). We identified morphotypes based on head and snout morphology: a pinocchio form that had an elongated snout and a normal form with a blunted snout. Large size classes of both morphotypes were distributed downstream of small and medium size classes, and normal whitefish were distributed downstream of pinocchio whitefish. Ordination of whitefish assemblages with nonmetric multidimensional scaling revealed that normal whitefish size classes were associated with higher gradient and depth, whereas pinocchio whitefish size classes were positively associated with pool area, distance upstream, and depth. Reach-scale generalised additive models indicated that normal whitefish relative density was associated with larger substrate size in downstream reaches (R2 = 0.64), and pinocchio whitefish were associated with greater stream depth in the reaches farther upstream (R2 = 0.87). These results suggest broad-scale spatial segregation (1–10 km), particularly between larger and more phenotypically extreme individuals. These results provide the first perspective on spatial distributions and habitat relationships of polymorphic mountain whitefish.

Spatial Distribution and Morphology of Sediments in Texas Southern High Plains Playa Wetlands

USDA-ARS?s Scientific Manuscript database

Playas are depressional geomorphic features on the U.S. High Plains and about 20,000 Southern High Plains playa wetlands serve as runoff catchment basins, which are thought to be focal points of Ogallala aquifer recharge. Sediments in playas can alter biodiversity services, impede aquifer recharge,...

Morphological changes in ultrafast laser ablation plumes with varying spot size.

PubMed

Harilal, S S; Diwakar, P K; Polek, M P; Phillips, M C

2015-06-15

We investigated the role of spot size on plume morphology during ultrafast laser ablation of metal targets. Our results show that the spatial features of fs LA plumes are strongly dependent on the focal spot size. Two-dimensional self-emission images showed that the shape of the ultrafast laser ablation plumes changes from spherical to cylindrical with an increasing spot size from 100 to 600 μm. The changes in plume morphology and internal structures are related to ion emission dynamics from the plasma, where broader angular ion distribution and faster ions are noticed for the smallest spot size used. The present results clearly show that the morphological changes in the plume with spot size are independent of laser pulse width.

Automated delineation and characterization of drumlins using a localized contour tree approach

NASA Astrophysics Data System (ADS)

Wang, Shujie; Wu, Qiusheng; Ward, Dylan

2017-10-01

Drumlins are ubiquitous landforms in previously glaciated regions, formed through a series of complex subglacial processes operating underneath the paleo-ice sheets. Accurate delineation and characterization of drumlins are essential for understanding the formation mechanism of drumlins as well as the flow behaviors and basal conditions of paleo-ice sheets. Automated mapping of drumlins is particularly important for examining the distribution patterns of drumlins across large spatial scales. This paper presents an automated vector-based approach to mapping drumlins from high-resolution light detection and ranging (LiDAR) data. The rationale is to extract a set of concentric contours by building localized contour trees and establishing topological relationships. This automated method can overcome the shortcomings of previously manual and automated methods for mapping drumlins, for instance, the azimuthal biases during the generation of shaded relief images. A case study was carried out over a portion of the New York Drumlin Field. Overall 1181 drumlins were identified from the LiDAR-derived DEM across the study region, which had been underestimated in previous literature. The delineation results were visually and statistically compared to the manual digitization results. The morphology of drumlins was characterized by quantifying the length, width, elongation ratio, height, area, and volume. Statistical and spatial analyses were conducted to examine the distribution pattern and spatial variability of drumlin size and form. The drumlins and the morphologic characteristics exhibit significant spatial clustering rather than randomly distributed patterns. The form of drumlins varies from ovoid to spindle shapes towards the downstream direction of paleo ice flows, along with the decrease in width, area, and volume. This observation is in line with previous studies, which may be explained by the variations in sediment thickness and/or the velocity increases of ice flows towards ice front.

The Grism Lens-Amplified Survey from Space (GLASS). VII. The Diversity of the Distribution of Star Formation in Cluster and Field Galaxies at 0.3 less than or equal to z less than or equal to 0.7

NASA Astrophysics Data System (ADS)

Vulcani, Benedetta; Treu, Tommaso; Schmidt, Kasper B.; Morishita, Takahiro; Dressler, Alan; Poggianti, Bianca M.; Abramson, Louis; Bradač, Marusa; Brammer, Gabriel B.; Hoag, Austin; Malkan, Matthew; Pentericci, Laura; Trenti, Michele

2016-12-01

Exploiting the slitless spectroscopy taken as part of the Grism Lens-Amplified Survey from Space (GLASS), we present an extended analysis of the spatial distribution of star formation in 76 galaxies in 10 clusters at 0.3\\lt z\\lt 0.7. We use 85 foreground and background galaxies in the same redshift range as a field sample. The samples are well matched in stellar mass (108-1011 {M}⊙ ) and star formation rate (0.5-50 {M}⊙ {{yr}}-1). We visually classify galaxies in terms of broad band morphology, Hα morphology, and likely physical process acting on the galaxy. Most Hα emitters have a spiral morphology (41% ± 8% in clusters, 51% ± 8% in the field), followed by mergers/interactions (28% ± 8%, 31% ± 7%, respectively) and early-type galaxies (remarkably as high as 29% ± 8% in clusters and 15% ± 6% in the field). A diversity of Hα morphologies is detected, suggesting a diversity of physical processes. In clusters, 30% ± 8% of the galaxies present a regular morphology, mostly consistent with star formation diffused uniformly across the stellar population (mostly in the disk component, when present). The second most common morphology (28% ± 8%) is asymmetric/jellyfish, consistent with ram-pressure stripping or other non-gravitational processes in 18% ± 8% of the cases. Ram-pressure stripping appears significantly less prominent in the field (2% ± 2%), where the most common morphology/mechanism appears to be consistent with minor gas-rich mergers or clump accretion. This work demonstrates that while environment-specific mechanisms affect galaxy evolution at this redshift, they are diverse and their effects are subtle. A full understanding of this complexity requires larger samples and detailed and spatially resolved physical models.

Observaciones combinadas XMM-Newton/Chandra del remanente de supernova G306.3-0.9

NASA Astrophysics Data System (ADS)

Filócomo, A.; Combi, J. A.; García, F.; Suárez, A. E.; Luque-Escamilla, P. L.; Parón, S.

2016-08-01

In this paper we study the spatial and spectral distribution of the physical and chemical properties of the supernova remnant G306.3-0.9 by using data of the X-rays telescopes XMM-Newton and Chandra, which we complement with radio and infrared information in order to study the morphology of the source and the effect of the shock wave in the interestelar medium. The results show a non-uniform morphology of the emission, dominated by thermal radiation with high values of Ne, Mg, S, Ca, Ar and Fe in the central region, typical of ejecta material. Also, using an infrared flux distribution, we could restrict the type of the progenitor responsible of the supernova phenomena.

Three-dimensional spatial modeling of spines along dendritic networks in human cortical pyramidal neurons

PubMed Central

Larrañaga, Pedro; Benavides-Piccione, Ruth; Fernaud-Espinosa, Isabel; DeFelipe, Javier; Bielza, Concha

2017-01-01

We modeled spine distribution along the dendritic networks of pyramidal neurons in both basal and apical dendrites. To do this, we applied network spatial analysis because spines can only lie on the dendritic shaft. We expanded the existing 2D computational techniques for spatial analysis along networks to perform a 3D network spatial analysis. We analyzed five detailed reconstructions of adult human pyramidal neurons of the temporal cortex with a total of more than 32,000 spines. We confirmed that there is a spatial variation in spine density that is dependent on the distance to the cell body in all dendrites. Considering the dendritic arborizations of each pyramidal cell as a group of instances of the same observation (the neuron), we used replicated point patterns together with network spatial analysis for the first time to search for significant differences in the spine distribution of basal dendrites between different cells and between all the basal and apical dendrites. To do this, we used a recent variant of Ripley’s K function defined to work along networks. The results showed that there were no significant differences in spine distribution along basal arbors of the same neuron and along basal arbors of different pyramidal neurons. This suggests that dendritic spine distribution in basal dendritic arbors adheres to common rules. However, we did find significant differences in spine distribution along basal versus apical networks. Therefore, not only do apical and basal dendritic arborizations have distinct morphologies but they also obey different rules of spine distribution. Specifically, the results suggested that spines are more clustered along apical than in basal dendrites. Collectively, the results further highlighted that synaptic input information processing is different between these two dendritic domains. PMID:28662210

Three-dimensional spatial modeling of spines along dendritic networks in human cortical pyramidal neurons.

PubMed

Anton-Sanchez, Laura; Larrañaga, Pedro; Benavides-Piccione, Ruth; Fernaud-Espinosa, Isabel; DeFelipe, Javier; Bielza, Concha

2017-01-01

We modeled spine distribution along the dendritic networks of pyramidal neurons in both basal and apical dendrites. To do this, we applied network spatial analysis because spines can only lie on the dendritic shaft. We expanded the existing 2D computational techniques for spatial analysis along networks to perform a 3D network spatial analysis. We analyzed five detailed reconstructions of adult human pyramidal neurons of the temporal cortex with a total of more than 32,000 spines. We confirmed that there is a spatial variation in spine density that is dependent on the distance to the cell body in all dendrites. Considering the dendritic arborizations of each pyramidal cell as a group of instances of the same observation (the neuron), we used replicated point patterns together with network spatial analysis for the first time to search for significant differences in the spine distribution of basal dendrites between different cells and between all the basal and apical dendrites. To do this, we used a recent variant of Ripley's K function defined to work along networks. The results showed that there were no significant differences in spine distribution along basal arbors of the same neuron and along basal arbors of different pyramidal neurons. This suggests that dendritic spine distribution in basal dendritic arbors adheres to common rules. However, we did find significant differences in spine distribution along basal versus apical networks. Therefore, not only do apical and basal dendritic arborizations have distinct morphologies but they also obey different rules of spine distribution. Specifically, the results suggested that spines are more clustered along apical than in basal dendrites. Collectively, the results further highlighted that synaptic input information processing is different between these two dendritic domains.

Long-Term Changes in the Distributions of Larval and Adult Fish in the Northeast U.S. Shelf Ecosystem.

PubMed

Walsh, Harvey J; Richardson, David E; Marancik, Katrin E; Hare, Jonathan A

2015-01-01

Many studies have documented long-term changes in adult marine fish distributions and linked these changes to climate change and multi-decadal climate variability. Most marine fish, however, have complex life histories with morphologically distinct stages, which use different habitats. Shifts in distribution of one stage may affect the connectivity between life stages and thereby impact population processes including spawning and recruitment. Specifically, many marine fish species have a planktonic larval stage, which lasts from weeks to months. We compared the spatial distribution and seasonal occurrence of larval fish in the Northeast U.S. Shelf Ecosystem to test whether spatial and temporal distributions changed between two decades. Two large-scale ichthyoplankton programs sampled using similar methods and spatial domain each decade. Adult distributions from a long-term bottom trawl survey over the same time period and spatial area were also analyzed using the same analytical framework to compare changes in larval and adult distributions between the two decades. Changes in spatial distribution of larvae occurred for 43% of taxa, with shifts predominately northward (i.e., along-shelf). Timing of larval occurrence shifted for 49% of the larval taxa, with shifts evenly split between occurring earlier and later in the season. Where both larvae and adults of the same species were analyzed, 48% exhibited different shifts between larval and adult stages. Overall, these results demonstrate that larval fish distributions are changing in the ecosystem. The spatial changes are largely consistent with expectations from a changing climate. The temporal changes are more complex, indicating we need a better understanding of reproductive timing of fishes in the ecosystem. These changes may impact population productivity through changes in life history connectivity and recruitment, and add to the accumulating evidence for changes in the Northeast U.S. Shelf Ecosystem with potential to impact fisheries and other ecosystem services.

Long-Term Changes in the Distributions of Larval and Adult Fish in the Northeast U.S. Shelf Ecosystem

PubMed Central

2015-01-01

Many studies have documented long-term changes in adult marine fish distributions and linked these changes to climate change and multi-decadal climate variability. Most marine fish, however, have complex life histories with morphologically distinct stages, which use different habitats. Shifts in distribution of one stage may affect the connectivity between life stages and thereby impact population processes including spawning and recruitment. Specifically, many marine fish species have a planktonic larval stage, which lasts from weeks to months. We compared the spatial distribution and seasonal occurrence of larval fish in the Northeast U.S. Shelf Ecosystem to test whether spatial and temporal distributions changed between two decades. Two large-scale ichthyoplankton programs sampled using similar methods and spatial domain each decade. Adult distributions from a long-term bottom trawl survey over the same time period and spatial area were also analyzed using the same analytical framework to compare changes in larval and adult distributions between the two decades. Changes in spatial distribution of larvae occurred for 43% of taxa, with shifts predominately northward (i.e., along-shelf). Timing of larval occurrence shifted for 49% of the larval taxa, with shifts evenly split between occurring earlier and later in the season. Where both larvae and adults of the same species were analyzed, 48% exhibited different shifts between larval and adult stages. Overall, these results demonstrate that larval fish distributions are changing in the ecosystem. The spatial changes are largely consistent with expectations from a changing climate. The temporal changes are more complex, indicating we need a better understanding of reproductive timing of fishes in the ecosystem. These changes may impact population productivity through changes in life history connectivity and recruitment, and add to the accumulating evidence for changes in the Northeast U.S. Shelf Ecosystem with potential to impact fisheries and other ecosystem services. PMID:26398900

Residual flow patterns and morphological changes along a macro- and meso-tidal coastline

NASA Astrophysics Data System (ADS)

Leonardi, Nicoletta; Plater, Andrew James

2017-11-01

The hydrodynamic and residual transport patterns arising from oscillating tidal motion have important consequences for the transport of sediments, and for the evolution of the shoreline, especially under macro- and meso-tidal conditions. For many locations there are significant uncertainties about residual currents and sediment transport characteristics, and their possible influence on the morphological evolution of the coastline and on the character of the bed. Herein we use the coastline of SE England as a test case to investigate possible changes in residual currents, and residual transport patterns from neap to spring tide, the reciprocal interaction between residuals and the character of the bed, and the morphological evolution of the coastline at a century timescale. We found that in the long term the morphology of the system evolves toward a dynamic equilibrium configuration characterized by smaller, and spatially constant residual transport patterns. While the spatial distribution of residual currents maintains a similar trend during both neap and spring tide, during spring tide and for large areas residual currents switch between northerly and southerly directions, and their magnitude is doubled. Residual eddies develop in regions characterized by the presence of sand bars due to the interaction of the tide with the varying topography. Residual transport patterns are also computed for various sediment fractions, and based on the hydrodynamics and sediment availability at the bottom. We found that the distribution of sediments on the bed is significantly correlated with the intensity of residuals. Finally, the majority of long-term morphological changes tend to develop or augment sand banks features, with an increase in elevation and steepening of the bank contours.

Knee Joint Kinematics during Walking Influences the Spatial Cartilage Thickness Distribution in the Knee

PubMed Central

Koo, Seungbum; Rylander, Jonathan H.; Andriacchi, Thomas P.

2010-01-01

The regional adaptation of knee cartilage morphology to the kinematics of walking has been suggested as an important factor in the evaluation of the consequences of alteration in normal gait leading to osteoarthritis. The purpose of this study was to investigate the association of spatial cartilage thickness distributions of the femur and tibia in the knee to the knee kinematics during walking. Gait data and knee MR images were obtained from 17 healthy volunteers (age 33.2±9.8 years). Cartilage thickness maps were created for the femoral and tibial cartilage. Locations of thickest cartilage in the medial and lateral compartments in the femur and tibia were identified using a numerical method. The flexion-extension (FE) angle associated with the cartilage contact regions on the femur, and the anterior-posterior (AP) translation and internal-external (IE) rotation associated with the cartilage contact regions on the tibia at the heel strike of walking were tested for correlation with the locations of thickest cartilage. The locations of the thickest cartilage had relatively large variation (SD 8.9°) and was significantly associated with the FE angle at heel strike only in the medial femoral condyle (R2=0.41, p<0.01). The natural knee kinematics and contact surface shapes seem to affect the functional adaptation of knee articular cartilage morphology. The sensitivity of cartilage morphology to kinematics at the knee during walking suggests that regional cartilage thickness variations are influenced by both loading and the number of loading cycles. Thus walking is an important consideration in the analysis of the morphological variations of articular cartilage, since it is the dominant cyclic activity of daily living. The sensitivity of cartilage morphology to gait kinematics is also important in understanding the etiology and pathomechanics of osteoarthritis. PMID:21371712

Morphological evolution of Ge/Si(001) quantum dot rings formed at the rim of wet-etched pits.

PubMed

Grydlik, Martyna; Brehm, Moritz; Schäffler, Friedrich

2012-10-30

We demonstrate the formation of Ge quantum dots in ring-like arrangements around predefined {111}-faceted pits in the Si(001) substrate. We report on the complex morphological evolution of the single quantum dots contributing to the rings by means of atomic force microscopy and demonstrate that by careful adjustment of the epitaxial growth parameters, such rings containing densely squeezed islands can be grown with large spatial distances of up to 5 μm without additional nucleation of randomly distributed quantum dots between the rings.

Controls on morphological variability and role of stream power distribution pattern, Yamuna River, western India

NASA Astrophysics Data System (ADS)

Bawa, Nupur; Jain, Vikrant; Shekhar, Shashank; Kumar, Niraj; Jyani, Vikas

2014-12-01

Understanding the controls on the morphological variability of river systems constitutes one of the fundamental questions in geomorphic investigation. Channel morphology is an important indicator of river processes and is of significance for mapping the hydrology-ecologic connectivity in a river system and for predicting the future trajectory of river health in response to external forcings. This paper documents the spatial morphological variability and its natural and anthropogenic controls for the Yamuna River, a major tributary of the Ganga River, India. The Yamuna River runs through a major urban centre i.e. Delhi National Capital Region. The Yamuna River was divided into eight geomorphically distinct reaches on the basis of the assemblages of geomorphic units and the association of landscape, valley and floodplain settings. The morphological variability was analysed through stream power distribution and sediment load data at various stations. Stream power distribution of the Yamuna River basin is characterised by a non-linear pattern that was used to distinguish (a) high energy ‘natural' upstream reaches, (b) ‘anthropogenically altered', low energy middle stream reaches, and (c) ‘rejuvenated' downstream reaches again with higher stream power. The relationship between stream power and channel morphology in these reaches was integrated with sediment load data to define the maximum flow efficiency (MFE) as the threshold for geomorphic transition. This analysis supports the continuity of river processes and the significance of a holistic, basin-scale approach rather than isolated local scale analysis in river studies.

Modeling the Spatiotemporal Evolution of the Melanoma Tumor Microenvironment

NASA Astrophysics Data System (ADS)

Signoriello, Alexandra; Bosenberg, Marcus; Shattuck, Mark; O'Hern, Corey

The tumor microenvironment, which includes tumor cells, tumor-associated macrophages (TAM), cancer-associated fibroblasts, and endothelial cells, drives the formation and progression of melanoma tumors. Using quantitative analysis of in vivo confocal images of melanoma tumors in three spatial dimensions, we examine the physical properties of the melanoma tumor microenvironment, including the numbers of different cells types, cell size, and morphology. We also compute the nearest neighbor statistics and measure intermediate range spatial correlations between different cell types. We also calculate the step size distribution, mean-square displacement, and non-Gaussian parameter from the spatial trajectories of different cell types in the tumor microenvironment.

Morphological changes in ultrafast laser ablation plumes with varying spot size

DOE PAGES

Harilal, S. S.; Diwakar, P. K.; Polek, M. P.; ...

2015-06-04

We investigated the role of spot size on plume morphology during ultrafast laser ablation of metal targets. Our results show that the spatial features of fs LA plumes are strongly dependent on the focal spot size. Two-dimensional self-emission images showed that the shape of the ultrafast laser ablation plumes changes from spherical to cylindrical with an increasing spot size from 100 to 600 μm. The changes in plume morphology and internal structures are related to ion emission dynamics from the plasma, where broader angular ion distribution and faster ions are noticed for the smallest spot size used. The present resultsmore » clearly show that the morphological changes in the plume with spot size are independent of laser pulse width.« less

DOE Office of Scientific and Technical Information (OSTI.GOV)

Harilal, S. S.; Diwakar, P. K.; Polek, M. P.

We investigated the role of spot size on plume morphology during ultrafast laser ablation of metal targets. Our results show that the spatial features of fs LA plumes are strongly dependent on the focal spot size. Two-dimensional self-emission images showed that the shape of the ultrafast laser ablation plumes changes from spherical to cylindrical with an increasing spot size from 100 to 600 μm. The changes in plume morphology and internal structures are related to ion emission dynamics from the plasma, where broader angular ion distribution and faster ions are noticed for the smallest spot size used. The present resultsmore » clearly show that the morphological changes in the plume with spot size are independent of laser pulse width.« less

Contrasting evolutionary patterns in two reef-corals and their possible relationship to life history traits

DOE Office of Scientific and Technical Information (OSTI.GOV)

Foster, A.B.

1985-01-01

Multivariate statistical analyses have been used to redefine species within two genera of reef-corals (Porites and Montastraea) and to trace their evolutionary patterns through a continuous sequence from late Miocene to early Pliocene time. The material studied consists of populations sampled at regular intervals through four stratigraphic sections in the northern Dominican Republic. The results show that species in the first genus (Porites) have relatively short durations, morphologic stability, and narrow spatial distributions. Their overall evolutionary history is characterized by short periods of radiation and widespread extinction, separated by longer periods of stasis. In contrast, species in the second genusmore » (Montastraea) exhibit various different durations and distributions and directional morphologic trends. These differences in patterns may be related to the dissimilar life histories of the two genera. Patterns in the first genus appear more common in organisms having high larval recruitment, high mortality, high genetic variation, and less morphologic distance between species. Patterns in the second genus occur more frequently in slower growing, phenotypically plastic organisms experiencing less recruitment and mortality and showing more morphologic distance between species.« less

Morphological Type, Spatial Reference, and Language Transfer.

ERIC Educational Resources Information Center

Jarvis, Scott; Odlin, Terence

2000-01-01

Clarifies issues related to the transferability of bound morphology and reports on an empirical investigation of morphological transfer in the spatial expressions of Finnish-speaking and Swedish-speaking adolescent learners of English. Results indicate that both the bound agglutinative morphology of the Finnish spatial system and the free,…

Impact of phytoplankton community structure and function on marine particulate optical properties

NASA Astrophysics Data System (ADS)

McFarland, Malcolm Neil

Phytoplankton are an ecologically important and diverse group of organisms whose distribution, abundance, and population dynamics vary significantly over small spatial (cm) and temporal (minutes) scales in the coastal ocean. Our inability to observe phytoplankton community structure and function at these small scales has severely limited our understanding of the fundamental ecological and evolutionary mechanisms that drive phytoplankton growth, mortality, adaptation and speciation. The goal of this dissertation was to enhance our understanding of phytoplankton ecology by improving in situ observational techniques based on the optical properties of cells, colonies, populations, and communities. Field and laboratory studies were used to determine the effects of phytoplankton species composition, morphology, and physiology on the inherent optical properties of communities and to explore the adaptive significance of bio-optically important cellular characteristics. Initial field studies found a strong association between species composition and the relative magnitude and shape of particulate absorption, scattering, and attenuation coefficient spectra. Subsequent field studies using scanning flow cytometry to directly measure optically important phytoplankton and non-algal particle characteristics demonstrated that the size and pigment content of large (>20 microm) phytoplankton cells and colonies vary significantly with the slope of particulate attenuation and absorption spectra, and with the ratio of particulate scattering to absorption. These relationships enabled visualization of phytoplankton community composition and mortality over small spatial and temporal scales derived from high resolution optical measurements acquired with an autonomous profiling system. Laboratory studies with diverse uni-algal cultures showed that morphological and physiological characteristics of cells and colonies can account for ˜30% of the optical variation observed in natural communities and that complex morphologies and low intracellular pigment concentrations minimize pigment self-shading that could otherwise limit bio-optical fitness. These results demonstrate that optical properties reveal detailed information about the distribution, abundance, morphology, and physiology of phytoplankton that can help explain their ecological dynamics over small spatial scales and the bio-optical function of diverse forms in the ocean.

Temporal and spatial variation of morphological descriptors for atmospheric aerosols collected in Mexico City

NASA Astrophysics Data System (ADS)

China, S.; Mazzoleni, C.; Dubey, M. K.; Chakrabarty, R. K.; Moosmuller, H.; Onasch, T. B.; Herndon, S. C.

2010-12-01

We present an analysis of morphological characteristics of atmospheric aerosol collected during the MILAGRO (Megacity Initiative: Local and Global Research Observations) field campaign that took place in Mexico City in March 2006. The sampler was installed on the Aerodyne mobile laboratory. The aerosol samples were collected on nuclepore clear polycarbonate filters mounted in Costar pop-top membrane holders. More than one hundred filters were collected at different ground sites with different atmospheric and geographical characteristics (urban, sub-urban, mountain-top, industrial, etc.) over a month period. Selected subsets of these filters were analyzed for aerosol morphology using a scanning electron microscope and image analysis techniques. In this study we investigate spatial and temporal variations of aerosol shape descriptors, morphological parameters, and fractal dimension. We also compare the morphological results with other aerosol measurements such as aerosol optical properties(scattering and absorption) and size distribution data. Atmospheric aerosols have different morphological characteristics depending on many parameters such as emission sources, atmospheric formation pathways, aging processes, and aerosol mixing state. The aerosol morphology influences aerosol chemical and mechanical interactions with the environment, physical properties, and radiative effects. In this study, ambient aerosol particles have been classified in different shape groups as spherical, irregularly shaped, and fractal-like aggregates. Different morphological parameters such as aspect ratio, roundness, feret diameter, etc. have been estimated for irregular shaped and spherical particles and for different kinds of soot particles including fresh soot, collapsed and coated soot. Fractal geometry and image processing have been used to obtain morphological characteristics of different soot particles. The number of monomers constituting each aggregate and their diameters were measured and used to estimate an ensemble three-dimensional (3-d) fractal dimension. One-dimensional (1-d) and two-dimensional (2-d) fractal geometries have been measured using a power-law scaling relationship between 1-d and 2-d properties of projected images. Temporal variations in fractal dimension of soot-like aggregates have been observed at the mountaintop site and spatial variation of fractal dimension and other morphological descriptors of different shaped particles have been investigated for the different ground sites.

The influence of aspect and altitude on the size, shape and spatial distribution of glacial cirques in the High Tatras (Slovakia, Poland)

NASA Astrophysics Data System (ADS)

Křížek, Marek; Mida, Peter

2013-09-01

The shape of glacial cirques is generally considered to result from the combined actions of climate, topography, and geology. The goal of this article was to determine the dependence of cirque morphology on mesoclimatic conditions defined by altitude and aspect in the highest part of the Carpathians — the High Tatras. The morphology of each of 116 analyzed cirques was described using a set of 12 morphometric characteristics. The relationships between the obtained data were evaluated using simple and multivariate statistical methods. The results indicate that cirques in the High Tatras are scale-specific landforms with allometric development. Their occurrence increases with altitude, but their size decreases. The shape of the cirques is determined by altitude only to a small extent, with the exception of an increase in the degree of incision with altitude. The spatial distribution of cirques is negatively influenced by incoming solar radiation and positively influenced by moisture sources, which came mainly from the NW to N during the cold phases of the Pleistocene. For this reason, north-facing cirques have proportionally stronger representation and are more incised with steep slopes. Thus, cirques have proportionally stronger representation on the northern slopes and represent more developed glacial erosion landforms than those on the southern slopes. Although some relationships were detected between cirque morphology and mesoclimatic factors (such as altitude and aspect), a general discriminant analysis showed that these environmental factors did not explain variations in cirque morphology with sufficient cogency.

Mapping of hydropedologic spatial patterns in a steep headwater catchment

Treesearch

Cody P. Gillin; Scott W. Bailey; Kevin J. McGuire; John P. Gannon

2015-01-01

A hydropedologic approach can be used to describe soil units affected by distinct hydrologic regimes. We used field observations of soil morphology and geospatial information technology to map the distribution of five hydropedologic soil units across a 42-ha forested headwater catchment. Soils were described and characterized at 172 locations within Watershed 3, the...

A morphogram for silica-witherite biomorphs and its application to microfossil identification in the early earth rock record.

PubMed

Rouillard, J; García-Ruiz, J-M; Gong, J; van Zuilen, M A

2018-05-01

Archean hydrothermal environments formed a likely site for the origin and early evolution of life. These are also the settings, however, were complex abiologic structures can form. Low-temperature serpentinization of ultramafic crust can generate alkaline, silica-saturated fluids in which carbonate-silica crystalline aggregates with life-like morphologies can self-assemble. These "biomorphs" could have adsorbed hydrocarbons from Fischer-Tropsch type synthesis processes, leading to metamorphosed structures that resemble carbonaceous microfossils. Although this abiogenic process has been extensively cited in the literature and has generated important controversy, so far only one specific biomorph type with a filamentous shape has been discussed for the interpretation of Archean microfossils. It is therefore critical to precisely determine the full distribution in morphology and size of these biomorphs, and to study the range of plausible geochemical conditions under which these microstructures can form. Here, a set of witherite-silica biomorph synthesis experiments in silica-saturated solutions is presented, for a range of pH values (from 9 to 11.5) and barium ion concentrations (from 0.6 to 40 mmol/L BaCl 2 ). Under these varying conditions, a wide range of life-like structures is found, from fractal dendrites to complex shapes with continuous curvature. The size, spatial concentration, and morphology of the biomorphs are strongly controlled by environmental parameters, among which pH is the most important. This potentially limits the diversity of environments in which the growth of biomorphs could have occurred on Early Earth. Given the variety of the observed biomorph morphologies, our results show that the morphology of an individual microstructure is a poor criterion for biogenicity. However, biomorphs may be distinguished from actual populations of cellular microfossils by their wide, unimodal size distribution. Biomorphs grown by diffusion in silica gel can be differentiated by their continuous gradient in size, spatial density, and morphology along the direction of diffusion. © 2018 The Authors. Geobiology Published by John Wiley & Sons Ltd.

Multi-Scale Approach for Predicting Fish Species Distributions across Coral Reef Seascapes

PubMed Central

Pittman, Simon J.; Brown, Kerry A.

2011-01-01

Two of the major limitations to effective management of coral reef ecosystems are a lack of information on the spatial distribution of marine species and a paucity of data on the interacting environmental variables that drive distributional patterns. Advances in marine remote sensing, together with the novel integration of landscape ecology and advanced niche modelling techniques provide an unprecedented opportunity to reliably model and map marine species distributions across many kilometres of coral reef ecosystems. We developed a multi-scale approach using three-dimensional seafloor morphology and across-shelf location to predict spatial distributions for five common Caribbean fish species. Seascape topography was quantified from high resolution bathymetry at five spatial scales (5–300 m radii) surrounding fish survey sites. Model performance and map accuracy was assessed for two high performing machine-learning algorithms: Boosted Regression Trees (BRT) and Maximum Entropy Species Distribution Modelling (MaxEnt). The three most important predictors were geographical location across the shelf, followed by a measure of topographic complexity. Predictor contribution differed among species, yet rarely changed across spatial scales. BRT provided ‘outstanding’ model predictions (AUC = >0.9) for three of five fish species. MaxEnt provided ‘outstanding’ model predictions for two of five species, with the remaining three models considered ‘excellent’ (AUC = 0.8–0.9). In contrast, MaxEnt spatial predictions were markedly more accurate (92% map accuracy) than BRT (68% map accuracy). We demonstrate that reliable spatial predictions for a range of key fish species can be achieved by modelling the interaction between the geographical location across the shelf and the topographic heterogeneity of seafloor structure. This multi-scale, analytic approach is an important new cost-effective tool to accurately delineate essential fish habitat and support conservation prioritization in marine protected area design, zoning in marine spatial planning, and ecosystem-based fisheries management. PMID:21637787

Multi-scale approach for predicting fish species distributions across coral reef seascapes.

PubMed

Pittman, Simon J; Brown, Kerry A

2011-01-01

Two of the major limitations to effective management of coral reef ecosystems are a lack of information on the spatial distribution of marine species and a paucity of data on the interacting environmental variables that drive distributional patterns. Advances in marine remote sensing, together with the novel integration of landscape ecology and advanced niche modelling techniques provide an unprecedented opportunity to reliably model and map marine species distributions across many kilometres of coral reef ecosystems. We developed a multi-scale approach using three-dimensional seafloor morphology and across-shelf location to predict spatial distributions for five common Caribbean fish species. Seascape topography was quantified from high resolution bathymetry at five spatial scales (5-300 m radii) surrounding fish survey sites. Model performance and map accuracy was assessed for two high performing machine-learning algorithms: Boosted Regression Trees (BRT) and Maximum Entropy Species Distribution Modelling (MaxEnt). The three most important predictors were geographical location across the shelf, followed by a measure of topographic complexity. Predictor contribution differed among species, yet rarely changed across spatial scales. BRT provided 'outstanding' model predictions (AUC = >0.9) for three of five fish species. MaxEnt provided 'outstanding' model predictions for two of five species, with the remaining three models considered 'excellent' (AUC = 0.8-0.9). In contrast, MaxEnt spatial predictions were markedly more accurate (92% map accuracy) than BRT (68% map accuracy). We demonstrate that reliable spatial predictions for a range of key fish species can be achieved by modelling the interaction between the geographical location across the shelf and the topographic heterogeneity of seafloor structure. This multi-scale, analytic approach is an important new cost-effective tool to accurately delineate essential fish habitat and support conservation prioritization in marine protected area design, zoning in marine spatial planning, and ecosystem-based fisheries management.

Fine-grained sediment spatial distribution on the basis of a geostatistical analysis: Example of the eastern Bay of the Seine (France)

NASA Astrophysics Data System (ADS)

Méar, Y.; Poizot, E.; Murat, A.; Lesueur, P.; Thomas, M.

2006-12-01

The eastern Bay of the Seine (English Channel) was the subject in 1991 of a sampling survey of superficial sediments. Geostatistic tools were used to examine the complexity of the spatial distribution of the fine-grained fraction (<50 μm). A central depocentre of fine sediments (i.e. content up to 50%) oriented in a NW-SE direction in a muddy coastal strip, in a very high energy hydrodynamical situation due to storm swells and its megatidal setting, is for the first time recognised and discussed. Within this sedimentary unit, the distribution of the fine fraction is very heterogeneous, with mud patches of less than 4000 m diameter; the boundary between these mud patches and their substratum is very sharp. The distribution of this fine fraction appears to be controlled by an anticyclonic eddy located off the Pays de Caux. Under the influence of this, the suspended material expelled from the Seine estuary moves along the coast and swings off Antifer harbour, towards the NW. It is trapped within this eddy because of the settling of suspended particulate matter. Both at a general scale and a local scale the morphology (whether inherited or due to modern processes) has a strong influence on the spatial distribution of the fine fraction. At the general scale, the basin-like shape of the area facilitates the silting, and the presence of the submarine dunes, called "Ridins d'Antifer", clearly determines the northern limit of the muddy zone. At a local scale, the same influence is obvious: paleovalleys trap the fine sediments, whereas isolated sand dunes and ripples limit the silting. This duality of role of the morphology is therefore one of the reasons why the muddy surface is extremely heterogeneous spatially. The presence of an important population of suspension feeding echinoderm, the brittle-star Ophiothrix fragilis Abildgaard, has led to a local increase in the silting, and to the modification of the physicochemical and sedimentological parameters. A complex relationship is shown to occur between the amount of fine fraction and the number of brittle-stars (ind. m -2). Classical statistical methods are not appropriate to study the spatial distribution of the mud fraction, because the spatial component of the percentage of the distribution is not integrated in the analysis. On the other hand, this is the main property of the geostatistic concepts. The use of geostatistic tools within a strict and clearly identified procedure enables the proposal of an accurate cartography. Further application of the proposed protocol (based on a semivariographic study and a conditional simulation interpolation) for surficial sediments mapping will help explain spatial and temporal variations of fine-grained fraction. Then assessments of sedimentation and erosion stages allow highlighting signature of environmental processes.

Statistical Analysis of 3D Images Detects Regular Spatial Distributions of Centromeres and Chromocenters in Animal and Plant Nuclei

PubMed Central

Biot, Eric; Adenot, Pierre-Gaël; Hue-Beauvais, Cathy; Houba-Hérin, Nicole; Duranthon, Véronique; Devinoy, Eve; Beaujean, Nathalie; Gaudin, Valérie; Maurin, Yves; Debey, Pascale

2010-01-01

In eukaryotes, the interphase nucleus is organized in morphologically and/or functionally distinct nuclear “compartments”. Numerous studies highlight functional relationships between the spatial organization of the nucleus and gene regulation. This raises the question of whether nuclear organization principles exist and, if so, whether they are identical in the animal and plant kingdoms. We addressed this issue through the investigation of the three-dimensional distribution of the centromeres and chromocenters. We investigated five very diverse populations of interphase nuclei at different differentiation stages in their physiological environment, belonging to rabbit embryos at the 8-cell and blastocyst stages, differentiated rabbit mammary epithelial cells during lactation, and differentiated cells of Arabidopsis thaliana plantlets. We developed new tools based on the processing of confocal images and a new statistical approach based on G- and F- distance functions used in spatial statistics. Our original computational scheme takes into account both size and shape variability by comparing, for each nucleus, the observed distribution against a reference distribution estimated by Monte-Carlo sampling over the same nucleus. This implicit normalization allowed similar data processing and extraction of rules in the five differentiated nuclei populations of the three studied biological systems, despite differences in chromosome number, genome organization and heterochromatin content. We showed that centromeres/chromocenters form significantly more regularly spaced patterns than expected under a completely random situation, suggesting that repulsive constraints or spatial inhomogeneities underlay the spatial organization of heterochromatic compartments. The proposed technique should be useful for identifying further spatial features in a wide range of cell types. PMID:20628576

Morphology, spatial distribution, and concentration of flame retardants in consumer products and environmental dusts using scanning electron microscopy and Raman micro-spectroscopy.

PubMed

Wagner, Jeff; Ghosal, Sutapa; Whitehead, Todd; Metayer, Catherine

2013-09-01

We characterized flame retardant (FR) morphologies and spatial distributions in 7 consumer products and 7 environmental dusts to determine their implications for transfer mechanisms, human exposure, and the reproducibility of gas chromatography-mass spectrometry (GC-MS) dust measurements. We characterized individual particles using scanning electron microscopy/energy dispersive x-ray spectroscopy (SEM/EDS) and Raman micro-spectroscopy (RMS). Samples were screened for the presence of 3 FR constituents (bromine, phosphorous, non-salt chlorine) and 2 metal synergists (antimony and bismuth). Subsequent analyses of select samples by RMS enabled molecular identification of the FR compounds and matrix materials. The consumer products and dust samples possessed FR elemental weight percents of up to 36% and 31%, respectively. We identified 24 FR-containing particles in the dust samples and classified them into 9 types based on morphology and composition. We observed a broad range of morphologies for these FR-containing particles, suggesting FR transfer to dust via multiple mechanisms. We developed an equation to describe the heterogeneity of FR-containing particles in environmental dust samples. The number of individual FR-containing particles expected in a 1-mg dust sample with a FR concentration of 100ppm ranged from <1 to >1000 particles. The presence of rare, high-concentration bromine particles was correlated with decabromodiphenyl ether concentrations obtained via GC-MS. When FRs are distributed heterogeneously in highly concentrated dust particles, human exposure to FRs may be characterized by high transient exposures interspersed by periods of low exposure, and GC-MS FR concentrations may exhibit large variability in replicate subsamples. Current limitations of this SEM/EDS technique include potential false negatives for volatile and chlorinated FRs and greater quantitation uncertainty for brominated FR in aluminum-rich matrices. Copyright © 2013 Elsevier Ltd. All rights reserved.

Influence of Ethnolinguistic Diversity on the Sorghum Genetic Patterns in Subsistence Farming Systems in Eastern Kenya

PubMed Central

Labeyrie, Vanesse; Deu, Monique; Barnaud, Adeline; Calatayud, Caroline; Buiron, Marylène; Wambugu, Peterson; Manel, Stéphanie; Glaszmann, Jean-Christophe; Leclerc, Christian

2014-01-01

Understanding the effects of actions undertaken by human societies on crop evolution processes is a major challenge for the conservation of genetic resources. This study investigated the mechanisms whereby social boundaries associated with patterns of ethnolinguistic diversity have influenced the on-farm distribution of sorghum diversity. Social boundaries limit the diffusion of planting material, practices and knowledge, thus shaping crop diversity in situ. To assess the effect of social boundaries, this study was conducted in the contact zone between the Chuka, Mbeere and Tharaka ethnolinguistic groups in eastern Kenya. Sorghum varieties were inventoried and samples collected in 130 households. In all, 297 individual plants derived from seeds collected under sixteen variety names were characterized using a set of 18 SSR molecular markers and 15 morphological descriptors. The genetic structure was investigated using both a Bayesian assignment method and distance-based clustering. Principal Coordinates Analysis was used to describe the structure of the morphological diversity of the panicles. The distribution of the varieties and the main genetic clusters across ethnolinguistic groups was described using a non-parametric MANOVA and pairwise Fisher tests. The spatial distribution of landrace names and the overall genetic spatial patterns were significantly correlated with ethnolinguistic partition. However, the genetic structure inferred from molecular makers did not discriminate the short-cycle landraces despite their morphological distinctness. The cases of two improved varieties highlighted possible fates of improved materials. The most recent one was often given the name of local landraces. The second one, that was introduced a dozen years ago, displays traces of admixture with local landraces with differential intensity among ethnic groups. The patterns of congruence or discordance between the nomenclature of farmers’ varieties and the structure of both genetic and morphological diversity highlight the effects of the social organization of communities on the diffusion of seed, practices, and variety nomenclature. PMID:24637745

MULTI-COMPONENT ANALYSIS OF POSITION-VELOCITY CUBES OF THE HH 34 JET

DOE Office of Scientific and Technical Information (OSTI.GOV)

Rodriguez-Gonzalez, A.; Esquivel, A.; Raga, A. C.

We present an analysis of H{alpha} spectra of the HH 34 jet with two-dimensional spectral resolution. We carry out multi-Gaussian fits to the spatially resolved line profiles and derive maps of the intensity, radial velocity, and velocity width of each of the components. We find that close to the outflow source we have three components: a high (negative) radial velocity component with a well-collimated, jet-like morphology; an intermediate velocity component with a broader morphology; and a positive radial velocity component with a non-collimated morphology and large linewidth. We suggest that this positive velocity component is associated with jet emission scatteredmore » in stationary dust present in the circumstellar environment. Farther away from the outflow source, we find only two components (a high, negative radial velocity component, which has a narrower spatial distribution than an intermediate velocity component). The fitting procedure was carried out with the new AGA-V1 code, which is available online and is described in detail in this paper.« less

Characterizing the heterogeneity of tumor tissues from spatially resolved molecular measures

PubMed Central

Zavodszky, Maria I.

2017-01-01

Background Tumor heterogeneity can manifest itself by sub-populations of cells having distinct phenotypic profiles expressed as diverse molecular, morphological and spatial distributions. This inherent heterogeneity poses challenges in terms of diagnosis, prognosis and efficient treatment. Consequently, tools and techniques are being developed to properly characterize and quantify tumor heterogeneity. Multiplexed immunofluorescence (MxIF) is one such technology that offers molecular insight into both inter-individual and intratumor heterogeneity. It enables the quantification of both the concentration and spatial distribution of 60+ proteins across a tissue section. Upon bioimage processing, protein expression data can be generated for each cell from a tissue field of view. Results The Multi-Omics Heterogeneity Analysis (MOHA) tool was developed to compute tissue heterogeneity metrics from MxIF spatially resolved tissue imaging data. This technique computes the molecular state of each cell in a sample based on a pathway or gene set. Spatial states are then computed based on the spatial arrangements of the cells as distinguished by their respective molecular states. MOHA computes tissue heterogeneity metrics from the distributions of these molecular and spatially defined states. A colorectal cancer cohort of approximately 700 subjects with MxIF data is presented to demonstrate the MOHA methodology. Within this dataset, statistically significant correlations were found between the intratumor AKT pathway state diversity and cancer stage and histological tumor grade. Furthermore, intratumor spatial diversity metrics were found to correlate with cancer recurrence. Conclusions MOHA provides a simple and robust approach to characterize molecular and spatial heterogeneity of tissues. Research projects that generate spatially resolved tissue imaging data can take full advantage of this useful technique. The MOHA algorithm is implemented as a freely available R script (see supplementary information). PMID:29190747

Impact of surface morphology on the properties of light emission in InGaN epilayers

NASA Astrophysics Data System (ADS)

Kristijonas Uždavinys, Tomas; Marcinkevičius, Saulius; Mensi, Mounir; Lahourcade, Lise; Carlin, Jean-François; Martin, Denis; Butté, Raphaël; Grandjean, Nicolas

2018-05-01

Scanning near-field optical microscopy was used to study the influence of the surface morphology on the properties of light emission and alloy composition in InGaN epitaxial layers grown on GaN substrates. A strong correlation between the maps of the photoluminescence (PL) peak energy and the gradient of the surface morphology was observed. This correlation demonstrates that the In incorporation strongly depends on the geometry of the monolayer step edges that form during growth in the step-flow mode. The spatial distribution of nonradiative recombination centers — evaluated from PL intensity maps — was found to strongly anticorrelate with the local content of In atoms in the InGaN alloy.

Origin of the Valley Networks On Mars: A Hydrological Perspective

NASA Technical Reports Server (NTRS)

Gulick, Virginia C.

2000-01-01

The geomorphology of the Martian valley networks is examined from a hydrological perspective for their compatibility with an origin by rainfall, globally higher heat flow, and localized hydrothermal systems. Comparison of morphology and spatial distribution of valleys on geologic surfaces with terrestrial fluvial valleys suggests that most Martian valleys are probably not indicative of a rainfall origin, nor are they indicative of formation by an early global uniformly higher heat flow. In general, valleys are not uniformly distributed within geologic surface units as are terrestrial fluvial valleys. Valleys tend to form either as isolated systems or in clusters on a geologic surface unit leaving large expanses of the unit virtually untouched by erosion. With the exception of fluvial valleys on some volcanoes, most Martian valleys exhibit a sapping morphology and do not appear to have formed along with those that exhibit a runoff morphology. In contrast, terrestrial sapping valleys form from and along with runoff valleys. The isolated or clustered distribution of valleys suggests localized water sources were important in drainage development. Persistent ground-water outflow driven by localized, but vigorous hydrothermal circulation associated with magmatism, volcanism, impacts, or tectonism is, however, consistent with valley morphology and distribution. Snowfall from sublimating ice-covered lakes or seas may have provided an atmospheric water source for the formation of some valleys in regions where the surface is easily eroded and where localized geothermal/hydrothermal activity is sufficient to melt accumulated snowpacks.

THE GINI COEFFICIENT AS A MORPHOLOGICAL MEASUREMENT OF STRONGLY LENSED GALAXIES IN THE IMAGE PLANE

DOE Office of Scientific and Technical Information (OSTI.GOV)

Florian, Michael K.; Li, Nan; Gladders, Michael D.

2016-12-01

Characterization of the morphology of strongly lensed galaxies is challenging because images of such galaxies are typically highly distorted. Lens modeling and source plane reconstruction is one approach that can provide reasonably undistorted images from which morphological measurements can be made, though at the expense of a highly spatially variable telescope point-spread function (PSF) when mapped back to the source plane. Unfortunately, modeling the lensing mass is a time- and resource-intensive process, and in many cases there are too few constraints to precisely model the lensing mass. If, however, useful morphological measurements could be made in the image plane rathermore » than the source plane, it would bypass this issue and obviate the need for a source reconstruction process for some applications. We examine the use of the Gini coefficient as one such measurement. Because it depends on the cumulative distribution of the light of a galaxy, but not the relative spatial positions, the fact that surface brightness is conserved by lensing means that the Gini coefficient may be well preserved by strong gravitational lensing. Through simulations, we test the extent to which the Gini coefficient is conserved, including by effects due to PSF convolution and pixelization, to determine whether it is invariant enough under lensing to be used as a measurement of galaxy morphology that can be made in the image plane.« less

The GINI coefficient as a morphological measurement of strongly lensed galaxies in the image plane

DOE Office of Scientific and Technical Information (OSTI.GOV)

Florian, Michael K.; Li, Nan; Gladders, Michael D.

2016-11-30

Characterization of the morphology of strongly lensed galaxies is challenging because images of such galaxies are typically highly distorted. Lens modeling and source plane reconstruction is one approach that can provide reasonably undistorted images from which morphological measurements can be made, though at the expense of a highly spatially variable telescope point-spread function (PSF) when mapped back to the source plane. Unfortunately, modeling the lensing mass is a time-and resource-intensive process, and in many cases there are too few constraints to precisely model the lensing mass. If, however, useful morphological measurements could be made in the image plane rather thanmore » the source plane, it would bypass this issue and obviate the need for a source reconstruction process for some applications. We examine the use of the Gini coefficient as one such measurement. Because it depends on the cumulative distribution of the light of a galaxy, but not the relative spatial positions, the fact that surface brightness is conserved by lensing means that the Gini coefficient may be well preserved by strong gravitational lensing. Through simulations, we test the extent to which the Gini coefficient is conserved, including by effects due to PSF convolution and pixelization, to determine whether it is invariant enough under lensing to be used as a measurement of galaxy morphology that can be made in the image plane.« less

Lunar and Planetary Science XXXV: Venus

NASA Technical Reports Server (NTRS)

2004-01-01

The session"Venus" included the following reports:Venera-Vega Geochemical Analyses: What Geologic Units are the Source of the Analyzed Material?; Mapping of Rift Zones on Venus, Preliminary Results: Spatial Distribution, Relationship with Regional Plains, Morphology of Fracturing, Topography and Style of Volcanism; An Effect of Stimulated Radiation Processes on Radio Emission from Major Planets; and Venusian Craters and the Origin of Coronae.

Bayesian spatial transformation models with applications in neuroimaging data

PubMed Central

Miranda, Michelle F.; Zhu, Hongtu; Ibrahim, Joseph G.

2013-01-01

Summary The aim of this paper is to develop a class of spatial transformation models (STM) to spatially model the varying association between imaging measures in a three-dimensional (3D) volume (or 2D surface) and a set of covariates. Our STMs include a varying Box-Cox transformation model for dealing with the issue of non-Gaussian distributed imaging data and a Gaussian Markov Random Field model for incorporating spatial smoothness of the imaging data. Posterior computation proceeds via an efficient Markov chain Monte Carlo algorithm. Simulations and real data analysis demonstrate that the STM significantly outperforms the voxel-wise linear model with Gaussian noise in recovering meaningful geometric patterns. Our STM is able to reveal important brain regions with morphological changes in children with attention deficit hyperactivity disorder. PMID:24128143

A Compressed Sensing-based Image Reconstruction Algorithm for Solar Flare X-Ray Observations

NASA Astrophysics Data System (ADS)

Felix, Simon; Bolzern, Roman; Battaglia, Marina

2017-11-01

One way of imaging X-ray emission from solar flares is to measure Fourier components of the spatial X-ray source distribution. We present a new compressed sensing-based algorithm named VIS_CS, which reconstructs the spatial distribution from such Fourier components. We demonstrate the application of the algorithm on synthetic and observed solar flare X-ray data from the Reuven Ramaty High Energy Solar Spectroscopic Imager satellite and compare its performance with existing algorithms. VIS_CS produces competitive results with accurate photometry and morphology, without requiring any algorithm- and X-ray-source-specific parameter tuning. Its robustness and performance make this algorithm ideally suited for the generation of quicklook images or large image cubes without user intervention, such as for imaging spectroscopy analysis.

A Compressed Sensing-based Image Reconstruction Algorithm for Solar Flare X-Ray Observations

DOE Office of Scientific and Technical Information (OSTI.GOV)

Felix, Simon; Bolzern, Roman; Battaglia, Marina, E-mail: simon.felix@fhnw.ch, E-mail: roman.bolzern@fhnw.ch, E-mail: marina.battaglia@fhnw.ch

One way of imaging X-ray emission from solar flares is to measure Fourier components of the spatial X-ray source distribution. We present a new compressed sensing-based algorithm named VIS-CS, which reconstructs the spatial distribution from such Fourier components. We demonstrate the application of the algorithm on synthetic and observed solar flare X-ray data from the Reuven Ramaty High Energy Solar Spectroscopic Imager satellite and compare its performance with existing algorithms. VIS-CS produces competitive results with accurate photometry and morphology, without requiring any algorithm- and X-ray-source-specific parameter tuning. Its robustness and performance make this algorithm ideally suited for the generation ofmore » quicklook images or large image cubes without user intervention, such as for imaging spectroscopy analysis.« less

Spatially Resolved Hard X-ray Emission in the Central 5 kpc of the Galaxy Merger NGC 6240

NASA Astrophysics Data System (ADS)

Wang, Junfeng; Nardini, E.; Fabbiano, G.; Karovska, M.; Elvis, M.; Pellegrini, S.; Max, C. E.; Risaliti, G.; U, V.; Zezas, A.

2013-04-01

We have obtained a deep, sub-arcsecond resolution X-ray image of the nuclear region of the luminous galaxy merger NGC 6240 with Chandra, which resolves the X-ray emission from the pair of active nuclei and the diffuse hot gas in great detail. We detect extended hard X-ray emission from 70 million K hot gas over a spatial scale of 5 kpc, indicating the presence of fast shocks with velocity of 2200 km/s. For the first time we obtain spatial distribution of this highly ionized gas emitting FeXXV and find that it shows a remarkable correspondence to the large scale morphology of H_2(1-0) S(1) line emission and Hα filaments. Propagation of fast shocks originated in the starburst driven wind into the ambient dense gas can account for this morphological correspondence. Both the energetics and the iron mass in the hot gas are consistent with the expected injection from the supernovae explosion during the starburst that is commensurate with its high star formation rate.

Assessment of Rip-Current Hazards Using Alongshore Topographic Anisotropy at Bondi Beach, Australia

NASA Astrophysics Data System (ADS)

Hartman, K.; Trimble, S. M.; Bishop, M. P.; Houser, C.

2016-12-01

Rip currents are a relatively high-velocity flow of water away from the beach common in coastal environments. As beach morphology adapts to sediment fluxes and wave climate, it is essential to be able to assess rip-current hazard conditions. Furthermore, it is essential to be able to characterize the scale-dependent bathymetric morphology that governs the extent and magnitude of a rip current. Consequently, our primary objective is to assess the alongshore distribution of topographic anisotropy, in order to identify rip-current hazard locations. Specifically, we utilized multi-band satellite imagery to generate a bathymetric digital elevation model (DEM) for Bondi Beach Australia, and collected field data to support our analysis. Scale-dependent spatial analysis of the DEM was conducted to assess the directional dependence of topographic relief, the magnitude of topographic anisotropy, and the degree of anisotropic symmetry. We displayed anisotropy parameters as images and false-color composites to visualize morphological conditions associated with rip channels. Our preliminary results indicate that rip channels generally have a higher anisotropy index and orthogonal orientation compared to dissipative or reflective beach anisotropy and orientation. Scale-dependent variations in anisotropy can be used to assess the spatial extent of rip currents. Furthermore, well-defined rip channels exhibit positive symmetry, while variations in the distribution of symmetry reflect sediment-flux variations alongshore. These results clearly reveal that a well-developed rip channel can be identified and assessed using topographic anisotropy, as scale-dependent anisotropy patterns are unique when compared to the surrounding bathymetry and terrain. In this way, it is possible to evaluate the alongshore distribution of rip currents. Alongshore topographic anisotropy data will be extremely important as input into hazard assessment studies and the development of hazard decision support systems.

Detecting climatically driven phylogenetic and morphological divergence among spruce (Picea) species worldwide

NASA Astrophysics Data System (ADS)

Wang, Guo-Hong; Li, He; Zhao, Hai-Wei; Zhang, Wei-Kang

2017-05-01

This study aimed to elucidate the relationship between climate and the phylogenetic and morphological divergence of spruces (Picea) worldwide. Climatic and georeferenced data were collected from a total of 3388 sites distributed within the global domain of spruce species. A phylogenetic tree and a morphological tree for the global spruces were reconstructed based on DNA sequences and morphological characteristics. Spatial evolutionary and ecological vicariance analysis (SEEVA) was used to detect the ecological divergence among spruces. A divergence index (D) with (0, 1) scaling was calculated for each climatic factor at each node for both trees. The annual mean values, extreme values and annual range of the climatic variables were among the major determinants for spruce divergence. The ecological divergence was significant (P < 0. 001) for 185 of the 279 comparisons at 31 nodes in the phylogenetic tree, as well as for 196 of the 288 comparisons at 32 nodes in the morphological tree. Temperature parameters and precipitation parameters tended to be the main driving factors for the primary divergences of spruce phylogeny and morphology, respectively. Generally, the maximum D of the climatic variables was smaller in the basal nodes than in the remaining nodes. Notably, the primary divergence of morphology and phylogeny among the investigated spruces tended to be driven by different selective pressures. Given the climate scenario of severe and widespread drought over land areas in the next 30-90 years, our findings shed light on the prediction of spruce distribution under future climate change.

Resource partitioning facilitates coexistence in sympatric cetaceans in the California Current.

PubMed

Fossette, Sabrina; Abrahms, Briana; Hazen, Elliott L; Bograd, Steven J; Zilliacus, Kelly M; Calambokidis, John; Burrows, Julia A; Goldbogen, Jeremy A; Harvey, James T; Marinovic, Baldo; Tershy, Bernie; Croll, Donald A

2017-11-01

Resource partitioning is an important process driving habitat use and foraging strategies in sympatric species that potentially compete. Differences in foraging behavior are hypothesized to contribute to species coexistence by facilitating resource partitioning, but little is known on the multiple mechanisms for partitioning that may occur simultaneously. Studies are further limited in the marine environment, where the spatial and temporal distribution of resources is highly dynamic and subsequently difficult to quantify. We investigated potential pathways by which foraging behavior may facilitate resource partitioning in two of the largest co-occurring and closely related species on Earth, blue ( Balaenoptera musculus ) and humpback ( Megaptera novaeangliae ) whales. We integrated multiple long-term datasets (line-transect surveys, whale-watching records, net sampling, stable isotope analysis, and remote-sensing of oceanographic parameters) to compare the diet, phenology, and distribution of the two species during their foraging periods in the highly productive waters of Monterey Bay, California, USA within the California Current Ecosystem. Our long-term study reveals that blue and humpback whales likely facilitate sympatry by partitioning their foraging along three axes: trophic, temporal, and spatial. Blue whales were specialists foraging on krill, predictably targeting a seasonal peak in krill abundance, were present in the bay for an average of 4.7 months, and were spatially restricted at the continental shelf break. In contrast, humpback whales were generalists apparently feeding on a mixed diet of krill and fishes depending on relative abundances, were present in the bay for a more extended period (average of 6.6 months), and had a broader spatial distribution at the shelf break and inshore. Ultimately, competition for common resources can lead to behavioral, morphological, and physiological character displacement between sympatric species. Understanding the mechanisms for species coexistence is both fundamental to maintaining biodiverse ecosystems, and provides insight into the evolutionary drivers of morphological differences in closely related species.

Active Longitude and Coronal Mass Ejection Occurrences

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gyenge, N.; Kiss, T. S.; Erdélyi, R.

The spatial inhomogeneity of the distribution of coronal mass ejection (CME) occurrences in the solar atmosphere could provide a tool to estimate the longitudinal position of the most probable CME-capable active regions in the Sun. The anomaly in the longitudinal distribution of active regions themselves is often referred to as active longitude (AL). In order to reveal the connection between the AL and CME spatial occurrences, here we investigate the morphological properties of active regions. The first morphological property studied is the separateness parameter, which is able to characterize the probability of the occurrence of an energetic event, such asmore » a solar flare or CME. The second morphological property is the sunspot tilt angle. The tilt angle of sunspot groups allows us to estimate the helicity of active regions. The increased helicity leads to a more complex buildup of the magnetic structure and also can cause CME eruption. We found that the most complex active regions appear near the AL and that the AL itself is associated with the most tilted active regions. Therefore, the number of CME occurrences is higher within the AL. The origin of the fast CMEs is also found to be associated with this region. We concluded that the source of the most probably CME-capable active regions is at the AL. By applying this method, we can potentially forecast a flare and/or CME source several Carrington rotations in advance. This finding also provides new information for solar dynamo modeling.« less

Active Longitude and Coronal Mass Ejection Occurrences

NASA Astrophysics Data System (ADS)

Gyenge, N.; Singh, T.; Kiss, T. S.; Srivastava, A. K.; Erdélyi, R.

2017-03-01

The spatial inhomogeneity of the distribution of coronal mass ejection (CME) occurrences in the solar atmosphere could provide a tool to estimate the longitudinal position of the most probable CME-capable active regions in the Sun. The anomaly in the longitudinal distribution of active regions themselves is often referred to as active longitude (AL). In order to reveal the connection between the AL and CME spatial occurrences, here we investigate the morphological properties of active regions. The first morphological property studied is the separateness parameter, which is able to characterize the probability of the occurrence of an energetic event, such as a solar flare or CME. The second morphological property is the sunspot tilt angle. The tilt angle of sunspot groups allows us to estimate the helicity of active regions. The increased helicity leads to a more complex buildup of the magnetic structure and also can cause CME eruption. We found that the most complex active regions appear near the AL and that the AL itself is associated with the most tilted active regions. Therefore, the number of CME occurrences is higher within the AL. The origin of the fast CMEs is also found to be associated with this region. We concluded that the source of the most probably CME-capable active regions is at the AL. By applying this method, we can potentially forecast a flare and/or CME source several Carrington rotations in advance. This finding also provides new information for solar dynamo modeling.

Jupiter's Polar Haze

NASA Astrophysics Data System (ADS)

Carlson, B. E.

1997-07-01

The nature and distribution of stratospheric aerosols in the polar regions of Jupiter are investigated using a combination of ground-based, Hubble Space Telescope (HST), and Voyager IRIS measurements. Of particular interest are the connections between the enhanced UV absorption in the polar regions and the bright polar hoods evident in methane band images and the connections between the aerosol, the infrared "hot spot", and the auroras. Spatial maps of the hydrocarbon emissions constructed from the Voyager IRIS measurements reveal enhanced acetylene emission coincident with the region of enhanced methane emission but morphologically distinct from the region of enhanced ethane emission. This finding confirms the existence of altitude- dependent hydrocarbon chemistry. Ground-based and HST data reveal the presence of longitudinal structure in the latitudinal distribution of the aerosols (i.e., break-down in zonal symmetry) apparently associated with circulation anomalies induced by the polar hot spot. In addition, the HST data reveal a change in the aerosol properties (e.g., phase function) in the vicinity of the hot spot while ruling out changes in their height and/or optical depth distribution. The HST data also reveal differential UV absorption coincident with the aurora strengthening the connection between aerosol formation/hydrocarbon chemistry and the aurora. The spectral dependence of this absorption suggests enhancements of the higher order hydrocarbons (e.g., benzene). The mismatch in spatial resolution between infrared (Voyager IRIS/ground-based IRTF) and HST measurements coupled with the change in morphology of the hot spot as revealed by the structure of the methane/acetylene emission versus that of the ethane emission suggests the existence of more complex spatial structure and additional thermal emission anomalies associated with auroral processes unresolved by current infrared measurements

Data on nearshore wave process and surficial beach deposits, central Tamil Nadu coast, India.

PubMed

Joevivek, V; Chandrasekar, N

2017-08-01

The chronicles of nearshore morphology and surficial beach deposits provide valuable information about the nature of the beach condition and the depositional environment. It imparts an understanding about the spatial and temporal relationship of nearshore waves and its influence over the distribution of beach sediments. This article contains data about wave and sediment dynamics of the ten sandy beaches along the central Tamil Nadu coast, India. This present dataset comprises nearshore wave parameters, breaker wave type, beach morphodynamic state, grain size distribution and weight percentage of heavy and light mineral distribution. The dataset will figure out the beach morphology and hydrodynamic condition with respect to the different monsoonal season. This will act as a field reference to realize the coastal dynamics in an open sea condition. The nearshore entities were obtained from the intensive field survey between January 2011 and December 2011, while characteristics of beach sediments are examined by the chemical process in the laboratory environment.

Coherent diffraction imaging of nanoscale strain evolution in a single crystal under high pressure

PubMed Central

Yang, Wenge; Huang, Xiaojing; Harder, Ross; Clark, Jesse N.; Robinson, Ian K.; Mao, Ho-kwang

2013-01-01

The evolution of morphology and internal strain under high pressure fundamentally alters the physical property, structural stability, phase transition and deformation mechanism of materials. Until now, only averaged strain distributions have been studied. Bragg coherent X-ray diffraction imaging is highly sensitive to the internal strain distribution of individual crystals but requires coherent illumination, which can be compromised by the complex high-pressure sample environment. Here we report the successful de-convolution of these effects with the recently developed mutual coherent function method to reveal the three-dimensional strain distribution inside a 400 nm gold single crystal during compression within a diamond-anvil cell. The three-dimensional morphology and evolution of the strain under pressures up to 6.4 GPa were obtained with better than 30 nm spatial resolution. In addition to providing a new approach for high-pressure nanotechnology and rheology studies, we draw fundamental conclusions about the origin of the anomalous compressibility of nanocrystals. PMID:23575684

Coherent diffraction imaging of nanoscale strain evolution in a single crystal under high pressure.

PubMed

Yang, Wenge; Huang, Xiaojing; Harder, Ross; Clark, Jesse N; Robinson, Ian K; Mao, Ho-kwang

2013-01-01

The evolution of morphology and internal strain under high pressure fundamentally alters the physical property, structural stability, phase transition and deformation mechanism of materials. Until now, only averaged strain distributions have been studied. Bragg coherent X-ray diffraction imaging is highly sensitive to the internal strain distribution of individual crystals but requires coherent illumination, which can be compromised by the complex high-pressure sample environment. Here we report the successful de-convolution of these effects with the recently developed mutual coherent function method to reveal the three-dimensional strain distribution inside a 400 nm gold single crystal during compression within a diamond-anvil cell. The three-dimensional morphology and evolution of the strain under pressures up to 6.4 GPa were obtained with better than 30 nm spatial resolution. In addition to providing a new approach for high-pressure nanotechnology and rheology studies, we draw fundamental conclusions about the origin of the anomalous compressibility of nanocrystals.

Spatial patterns of erosion in a bedrock gorge

NASA Astrophysics Data System (ADS)

Beer, Alexander. R.; Turowski, Jens M.; Kirchner, James W.

2017-01-01

Understanding the physical processes driving bedrock channel formation is essential for interpreting and predicting the evolution of mountain landscapes. Here we analyze bedrock erosion patterns measured at unprecedented spatial resolution (mm) over 2 years in a natural bedrock gorge. These spatial patterns show that local bedrock erosion rates depend on position in the channel cross section, height above the streambed, and orientation relative to the main streamflow and sediment path. These observations are consistent with the expected spatial distribution of impacting particles (the tools effect) and shielding by sediment on the bed (the cover effect). Vertical incision by bedrock abrasion averaged 1.5 mm/a, lateral abrasion averaged 0.4 mm/a, and downstream directed abrasion of flow obstacles averaged 2.6 mm/a. However, a single plucking event locally exceeded these rates by orders of magnitude (˜100 mm/a), and accounted for one third of the eroded volume in the studied gorge section over the 2 year study period. Hence, if plucking is spatially more frequent than we observed in this study period, it may contribute substantially to long-term erosion rates, even in the relatively massive bedrock at our study site. Our observations demonstrate the importance of bedrock channel morphology and the spatial distribution of moving and static sediment in determining local erosion rates.

Modeling electronic trap state distributions in nanocrystalline anatase

NASA Astrophysics Data System (ADS)

Le, Nam; Schweigert, Igor

The charge transport properties of nanocrystalline TiO2 films, and thus the catalytic performance of devices that incorporate them, are affected strongly by the spatial and energetic distribution of localized electronic trap states. Such traps may arise from a variety of defects: Ti interstitials, O vacancies, step edges at surfaces, and grain boundaries. We have developed a procedure for applying density functional theory (DFT) and density functional tight binding (DFTB) calculations to characterize distributions of localized states arising from multiple types of defects. We have applied the procedure to investigate how the morphologies of interfaces between pairs of attached anatase nanoparticles determine the energies of trap states therein. Our results complement recent experimental findings that subtle changes in the morphology of highly porous TiO2 aerogel networks can have a dramatic effect on catalytic performance, which was attributed to changes in the distribution of trap states. This work was supported by the U.S. Naval Research Laboratory via the National Research Council and by the Office of Naval Research through the U.S. Naval Research Laboratory.

Ecological Speciation in Nolina parviflora (Asparagaceae): Lacking Spatial Connectivity along of the Trans-Mexican Volcanic Belt

PubMed Central

Ruiz-Sanchez, Eduardo; Specht, Chelsea D.

2014-01-01

The hypothesis of ecological speciation states that as populations diverge in different niches, reproductive isolation evolves as a by-product of adaptation to these different environments. In this context, we used Nolina parviflora as a model to test if this species evolved via ecological speciation and to explore current and historical gene flow among its populations. Nolina parviflora is a montane species endemic to Mexico with its geographical distribution restricted largely to the Trans-Mexican Volcanic Belt. This mountain range is one of the most complex geological regions in Mexico, having undergone volcanism from the mid-Miocene to the present. Ecologically, the Trans-Mexican Volcanic Belt possesses different types of vegetation, including tropical dry forest; oak, pine, pine-oak, and pine-juniper forests; and xerophytic scrub - all of which maintain populations of N. parviflora. Using species distribution models, climatic analyses, spatial connectivity and morphological comparisons, we found significant differences in climatic and morphological variables between populations of N. parviflora in two distinct Trans-Mexican Volcanic Belt regions (east vs. west). This could mean that the geographically isolated populations diverged from one another via niche divergence, indicating ecological speciation. Spatial connectivity analysis revealed no connectivity between these regions under the present or last glacial maximum climate models, indicating a lack of gene flow between the populations of the two regions. The results imply that these populations may encompass more than a single species. PMID:24905911

Ecological speciation in Nolina parviflora (Asparagaceae): lacking spatial connectivity along of the Trans-Mexican Volcanic Belt.

PubMed

Ruiz-Sanchez, Eduardo; Specht, Chelsea D

2014-01-01

The hypothesis of ecological speciation states that as populations diverge in different niches, reproductive isolation evolves as a by-product of adaptation to these different environments. In this context, we used Nolina parviflora as a model to test if this species evolved via ecological speciation and to explore current and historical gene flow among its populations. Nolina parviflora is a montane species endemic to Mexico with its geographical distribution restricted largely to the Trans-Mexican Volcanic Belt. This mountain range is one of the most complex geological regions in Mexico, having undergone volcanism from the mid-Miocene to the present. Ecologically, the Trans-Mexican Volcanic Belt possesses different types of vegetation, including tropical dry forest; oak, pine, pine-oak, and pine-juniper forests; and xerophytic scrub--all of which maintain populations of N. parviflora. Using species distribution models, climatic analyses, spatial connectivity and morphological comparisons, we found significant differences in climatic and morphological variables between populations of N. parviflora in two distinct Trans-Mexican Volcanic Belt regions (east vs. west). This could mean that the geographically isolated populations diverged from one another via niche divergence, indicating ecological speciation. Spatial connectivity analysis revealed no connectivity between these regions under the present or last glacial maximum climate models, indicating a lack of gene flow between the populations of the two regions. The results imply that these populations may encompass more than a single species.

Channel planform evolution: Spatial and temporal aspect

NASA Astrophysics Data System (ADS)

Rusnák, M.; Frandofer, M.; Lehotský, M.

2012-04-01

The recent period is characterized by impacts of climate change. Increasing magnitude and frequency of flood events results in morphological and morphodynamical changes of river channels. It is a challenge for the fluvial geomorphology to highlight the morphological response to these events, because the knowledge of the morphological-sedimentological attributes of the river channel is the first step in pursue of a comprehensive knowledge of the riverine landscape and impact on its sustainable management. Research of the spatial variability of landforms and the regime of processes creates an appropriate knowledge base for other sciences interested in the riverine as well as terrestrial systems. The contribution deals with the morphological changes of the channel pattern of the River Topľa (115 km in total length, 1506 km2 of catchment area, average annual discharge 8.08 m3.s-1 in mouth). The 72.5 km long segment has been studied (Strahler ord. 4-7). It represents a transient from the mountain cobble-bed to the basin fine gravel-bed river. The Topľa is a less regulated and laterally partly confined river in northeastern Slovakia, with flysch geology. Three time horizons of the remote sensing imagery (1987, 2002 and 2009) have been analyzed using the GIS, with the reference time horizon of 1987. The analysis consists of identification and delimitation of an active channel bank line and the delimitation of the channel bars in the mentioned series of imageries. The active channel width, area of channel bars, lateral channel shift and area stricken by bank erosion were studied via overlaying layers. The last attribute showed a significant increase: during the 1987-2002 period the area of 32.6 ha was eroded, whereas during the following period (2002-2009) of frequent and intensive floods up to 70.0 ha was eroded. Likewise, the maximum channel shift was 260 m and 443 m in 1987-2002 and in 2002-2009 respectively. The key results are not only the values of these parameters, but mostly their spatial distribution, which corresponds with the distribution of the geomorphological processes. The study reach has a piedmont character where these processes increase in the longitudinal direction, reach a morphodynamic apex and decrease afterwards. This river segment is represented by the presence of gravel bars and flow bifurcation, thus the river approaches a braided style, but does not reach it due to the insufficient slope. The contemporary flood events elongated this hyperactive segment delivering excessive sediment loads downstream. On the river reach level, the spatial distribution of increased processes is constricted by the tectonic and structural predispositions, which control them. Keywords: channel planform, lateral shift, bank erosion, extreme flood events, the River Topľa

Chord-length and free-path distribution functions for many-body systems

NASA Astrophysics Data System (ADS)

Lu, Binglin; Torquato, S.

1993-04-01

We study fundamental morphological descriptors of disordered media (e.g., heterogeneous materials, liquids, and amorphous solids): the chord-length distribution function p(z) and the free-path distribution function p(z,a). For concreteness, we will speak in the language of heterogeneous materials composed of two different materials or ``phases.'' The probability density function p(z) describes the distribution of chord lengths in the sample and is of great interest in stereology. For example, the first moment of p(z) is the ``mean intercept length'' or ``mean chord length.'' The chord-length distribution function is of importance in transport phenomena and problems involving ``discrete free paths'' of point particles (e.g., Knudsen diffusion and radiative transport). The free-path distribution function p(z,a) takes into account the finite size of a simple particle of radius a undergoing discrete free-path motion in the heterogeneous material and we show that it is actually the chord-length distribution function for the system in which the ``pore space'' is the space available to a finite-sized particle of radius a. Thus it is shown that p(z)=p(z,0). We demonstrate that the functions p(z) and p(z,a) are related to another fundamentally important morphological descriptor of disordered media, namely, the so-called lineal-path function L(z) studied by us in previous work [Phys. Rev. A 45, 922 (1992)]. The lineal path function gives the probability of finding a line segment of length z wholly in one of the ``phases'' when randomly thrown into the sample. We derive exact series representations of the chord-length and free-path distribution functions for systems of spheres with a polydispersivity in size in arbitrary dimension D. For the special case of spatially uncorrelated spheres (i.e., fully penetrable spheres) we evaluate exactly the aforementioned functions, the mean chord length, and the mean free path. We also obtain corresponding analytical formulas for the case of mutually impenetrable (i.e., spatially correlated) polydispersed spheres.

Bayesian spatial transformation models with applications in neuroimaging data.

PubMed

Miranda, Michelle F; Zhu, Hongtu; Ibrahim, Joseph G

2013-12-01

The aim of this article is to develop a class of spatial transformation models (STM) to spatially model the varying association between imaging measures in a three-dimensional (3D) volume (or 2D surface) and a set of covariates. The proposed STM include a varying Box-Cox transformation model for dealing with the issue of non-Gaussian distributed imaging data and a Gaussian Markov random field model for incorporating spatial smoothness of the imaging data. Posterior computation proceeds via an efficient Markov chain Monte Carlo algorithm. Simulations and real data analysis demonstrate that the STM significantly outperforms the voxel-wise linear model with Gaussian noise in recovering meaningful geometric patterns. Our STM is able to reveal important brain regions with morphological changes in children with attention deficit hyperactivity disorder. © 2013, The International Biometric Society.

Characterizing multiscale variability of zero intermittency in spatial rainfall

NASA Technical Reports Server (NTRS)

Kumar, Praveen; Foufoula-Georgiou, Efi

1994-01-01

In this paper the authors study how zero intermittency in spatial rainfall, as described by the fraction of area covered by rainfall, changes with spatial scale of rainfall measurement or representation. A statistical measure of intermittency that describes the size distribution of 'voids' (nonrainy areas imbedded inside rainy areas) as a function of scale is also introduced. Morphological algorithms are proposed for reconstructing rainfall intermittency at fine scales given the intermittency at coarser scales. These algorithms are envisioned to be useful in hydroclimatological studies where the rainfall spatial variability at the subgrid scale needs to be reconstructed from the results of synoptic- or mesoscale meteorological numerical models. The developed methodologies are demsonstrated and tested using data from a severe springtime midlatitude squall line and a mild midlatitude winter storm monitored by a meteorological radar in Norman, Oklahoma.

Hydrogeomorphological variability and ecological impacts in straight and restored river reach sections

NASA Astrophysics Data System (ADS)

Schäppi, B.; Molnar, P.; Perona, P.; Tockner, K.; Burlando, P.

2009-04-01

Healthy floodplain ecosystems are characterized by high habitat diversity which tends to be lost in straightened channelized rivers. River restoration projects aim to increase habitat heterogeneity by re-establishing natural flow conditions and/or re-activating geomorphic processes in straightened reaches. The success of such projects is usually measured by means of structural and functional hydrogeomorphic and ecological indicators. Important indicators include flow variables and morphological features such as flow depth, velocity, shore line length, exposed gravel area and wetted river width. Also important are the rates at which these variables and features change under varying streamflow. A high spatial variability in the indicators is generally connected with high habitat diversity. The temporal availability and spatial distribution of both aquatic and riparian habitats control the composition and diversity of benthic organisms, fish, and riparian communities. Spatial heterogeneity provides refugia, i.e. areas from which recolonization after a disturbance event may occur. In addition, it facilitates the transfer of organisms and matter across the aquatic and terrestrial interface, thereby increasing the overall functional performance of coupled river-riparian ecosystems. However the habitat diversity can be maintained over time only if there are frequent disturbances such as periodic floods that reset the system and create new germination sites for pioneer vegetation and rework the channel bed to form new aquatic habitat. Therefore the flow and morphology indicators need to be investigated on spatial as well as on temporal scales. Traditionally, these indicators are measured in the field albeit most measurements can be carried out only at low flow conditions. We propose that flow simulations with a 2d hydrodynamic model may be used for a fast and convenient assessment of indicators of flow variables and morphological features with relatively little calibration required and we illustrate an example thereof. The advantage of using computer simulations as compared to field observations is that a range of discharges can be investigated. Using a flood frequency analysis the return period of simulated flows can be estimated and translated into frequency-dependent habitat types. In order to investigate how flow variables change, we conducted a series of 2d flow simulations at different flow rates along the prealpine Thur River (Switzerland) consisting of both restored and straight reaches. Restoration basically consisted of widening the river cross-section and allowing a natural morphology to form. The simulated flow variables (flow depth and velocity) were then analyzed separately for the two reaches. The distributions of the both variables for the restored reach were significantly different from the straight reach, most notably an increase in the variance was observed. In order to analyze the temporal variability we investigated the development of the riverbed morphology over time using different digital elevation models combined with cross section data measured at annual intervals. Spatially explicit erosion and deposition patterns were derived from this analysis. The riverbed topography at different dates was then used to analyze the temporal evolution of the flow indicators for the different flow conditions. Comparisons between the restored and straight reaches allow us to assess the success of river restoration in terms of flow variability and morphological complexity.

Spatially patterned matrix elasticity directs stem cell fate

NASA Astrophysics Data System (ADS)

Yang, Chun; DelRio, Frank W.; Ma, Hao; Killaars, Anouk R.; Basta, Lena P.; Kyburz, Kyle A.; Anseth, Kristi S.

2016-08-01

There is a growing appreciation for the functional role of matrix mechanics in regulating stem cell self-renewal and differentiation processes. However, it is largely unknown how subcellular, spatial mechanical variations in the local extracellular environment mediate intracellular signal transduction and direct cell fate. Here, the effect of spatial distribution, magnitude, and organization of subcellular matrix mechanical properties on human mesenchymal stem cell (hMSCs) function was investigated. Exploiting a photodegradation reaction, a hydrogel cell culture substrate was fabricated with regions of spatially varied and distinct mechanical properties, which were subsequently mapped and quantified by atomic force microscopy (AFM). The variations in the underlying matrix mechanics were found to regulate cellular adhesion and transcriptional events. Highly spread, elongated morphologies and higher Yes-associated protein (YAP) activation were observed in hMSCs seeded on hydrogels with higher concentrations of stiff regions in a dose-dependent manner. However, when the spatial organization of the mechanically stiff regions was altered from a regular to randomized pattern, lower levels of YAP activation with smaller and more rounded cell morphologies were induced in hMSCs. We infer from these results that irregular, disorganized variations in matrix mechanics, compared with regular patterns, appear to disrupt actin organization, and lead to different cell fates; this was verified by observations of lower alkaline phosphatase (ALP) activity and higher expression of CD105, a stem cell marker, in hMSCs in random versus regular patterns of mechanical properties. Collectively, this material platform has allowed innovative experiments to elucidate a novel spatial mechanical dosing mechanism that correlates to both the magnitude and organization of spatial stiffness.

Spatial Scaling of Environmental Variables Improves Species-Habitat Models of Fishes in a Small, Sand-Bed Lowland River

PubMed Central

Radinger, Johannes; Wolter, Christian; Kail, Jochem

2015-01-01

Habitat suitability and the distinct mobility of species depict fundamental keys for explaining and understanding the distribution of river fishes. In recent years, comprehensive data on river hydromorphology has been mapped at spatial scales down to 100 m, potentially serving high resolution species-habitat models, e.g., for fish. However, the relative importance of specific hydromorphological and in-stream habitat variables and their spatial scales of influence is poorly understood. Applying boosted regression trees, we developed species-habitat models for 13 fish species in a sand-bed lowland river based on river morphological and in-stream habitat data. First, we calculated mean values for the predictor variables in five distance classes (from the sampling site up to 4000 m up- and downstream) to identify the spatial scale that best predicts the presence of fish species. Second, we compared the suitability of measured variables and assessment scores related to natural reference conditions. Third, we identified variables which best explained the presence of fish species. The mean model quality (AUC = 0.78, area under the receiver operating characteristic curve) significantly increased when information on the habitat conditions up- and downstream of a sampling site (maximum AUC at 2500 m distance class, +0.049) and topological variables (e.g., stream order) were included (AUC = +0.014). Both measured and assessed variables were similarly well suited to predict species’ presence. Stream order variables and measured cross section features (e.g., width, depth, velocity) were best-suited predictors. In addition, measured channel-bed characteristics (e.g., substrate types) and assessed longitudinal channel features (e.g., naturalness of river planform) were also good predictors. These findings demonstrate (i) the applicability of high resolution river morphological and instream-habitat data (measured and assessed variables) to predict fish presence, (ii) the importance of considering habitat at spatial scales larger than the sampling site, and (iii) that the importance of (river morphological) habitat characteristics differs depending on the spatial scale. PMID:26569119

Magnetic resonance microscopy for assessment of morphological changes in hydrating hydroxypropylmethyl cellulose matrix tablets in situ.

PubMed

Kulinowski, Piotr; Młynarczyk, Anna; Dorożyński, Przemysław; Jasiński, Krzysztof; Gruwel, Marco L H; Tomanek, Bogusław; Węglarz, Władysław P

2012-12-01

To resolve contradictions found in morphology of hydrating hydroxypropylmethyl cellulose (HPMC) matrix as studied using Magnetic Resonance Imaging (MRI) techniques. Until now, two approaches were used in the literature: either two or three regions that differ in physicochemical properties were identified. Multiparametric, spatially and temporally resolved T(2) MR relaxometry in situ was applied to study the hydration progress in HPMC matrix tablets using a 11.7 T MRI system. Two spin-echo based pulse sequences-one of them designed to specifically study short T(2) signals-were used. Two components in the T(2) decay envelope were estimated and spatial distributions of their parameters, i.e. amplitudes and T(2) values, were obtained. Based on the data, five different regions and their temporal evolution were identified: dry glassy, hydrated solid like, two interface layers and gel layer. The regions were found to be separated by four evolving fronts identified as penetration, full hydration, total gelification and apparent erosion. The MRI results showed morphological details of the hydrating HPMC matrices matching compound theoretical models. The proposed method will allow for adequate evaluation of controlled release polymeric matrix systems loaded with drug substances of different solubility.

Principles for the dynamic maintenance of cortical polarity

PubMed Central

Marco, Eugenio; Wedlich-Soldner, Roland; Li, Rong; Altschuler, Steven J.; Wu, Lani F.

2007-01-01

Summary Diverse cell types require the ability to dynamically maintain polarized membrane protein distributions through balancing transport and diffusion. However, design principles underlying dynamically maintained cortical polarity are not well understood. Here we constructed a mathematical model for characterizing the morphology of dynamically polarized protein distributions. We developed analytical approaches for measuring all model parameters from single-cell experiments. We applied our methods to a well-characterized system for studying polarized membrane proteins: budding yeast cells expressing activated Cdc42. We found that balanced diffusion and colocalized transport to and from the plasma membrane were sufficient for accurately describing polarization morphologies. Surprisingly, the model predicts that polarized regions are defined with a precision that is nearly optimal for measured transport rates, and that polarity can be dynamically stabilized through positive feedback with directed transport. Our approach provides a step towards understanding how biological systems shape spatially precise, unambiguous cortical polarity domains using dynamic processes. PMID:17448998

Bedrock mapping of buried valley networks using seismic reflection and airborne electromagnetic data

NASA Astrophysics Data System (ADS)

Oldenborger, G. A.; Logan, C. E.; Hinton, M. J.; Pugin, A. J.-M.; Sapia, V.; Sharpe, D. R.; Russell, H. A. J.

2016-05-01

In glaciated terrain, buried valleys often host aquifers that are significant groundwater resources. However, given the range of scales, spatial complexity and depth of burial, buried valleys often remain undetected or insufficiently mapped. Accurate and thorough mapping of bedrock topography is a crucial step in detecting and delineating buried valleys and understanding formative valley processes. We develop a bedrock mapping procedure supported by the combination of seismic reflection data and helicopter time-domain electromagnetic data with water well records for the Spiritwood buried valley aquifer system in Manitoba, Canada. The limited spatial density of water well bedrock observations precludes complete depiction of the buried valley bedrock topography and renders the water well records alone inadequate for accurate hydrogeological model building. Instead, we leverage the complementary strengths of seismic reflection and airborne electromagnetic data for accurate local detection of the sediment-bedrock interface and for spatially extensive coverage, respectively. Seismic reflection data are used to define buried valley morphology in cross-section beneath survey lines distributed over a regional area. A 3D model of electrical conductivity is derived from inversion of the airborne electromagnetic data and used to extrapolate buried valley morphology over the entire survey area. A spatially variable assignment of the electrical conductivity at the bedrock surface is applied to different features of the buried valley morphology identified in the seismic cross-sections. Electrical conductivity is then used to guide construction of buried valley shapes between seismic sections. The 3D locus of points defining each morphological valley feature is constructed using a path optimization routine that utilizes deviation from the assigned electrical conductivities as the cost function. Our resulting map represents a bedrock surface of unprecedented detail with more complexity than has been suggested by previous investigations. Our procedure is largely data-driven with an adaptable degree of expert user input that provides a clear protocol for incorporating different types of geophysical data into the bedrock mapping procedure.

Three-dimensional analysis of synapses in the transentorhinal cortex of Alzheimer's disease patients.

PubMed

Domínguez-Álvaro, M; Montero-Crespo, M; Blazquez-Llorca, L; Insausti, R; DeFelipe, J; Alonso-Nanclares, L

2018-03-02

Synaptic dysfunction or loss in early stages of Alzheimer's disease (AD) is thought to be a major structural correlate of cognitive dysfunction. Early loss of episodic memory, which occurs at the early stage of AD, is closely associated with the progressive degeneration of medial temporal lobe (MTL) structures of which the transentorhinal cortex (TEC) is the first affected area. However, no ultrastructural studies have been performed in this region in human brain samples from AD patients. In the present study, we have performed a detailed three-dimensional (3D) ultrastructural analysis using focused ion beam/scanning electron microscopy (FIB/SEM) to investigate possible synaptic alterations in the TEC of patients with AD. Surprisingly, the analysis of the density, morphological features and spatial distribution of synapses in the neuropil showed no significant differences between AD and control samples. However, light microscopy studies showed that cortical thickness of the TEC was severely reduced in AD samples, but there were no changes in the volume occupied by neuronal and glial cell bodies, blood vessels, and neuropil. Thus, the present results indicate that there is a dramatic loss of absolute number of synapses, while the morphology of synaptic junctions and synaptic spatial distribution are maintained. How these changes affect cognitive impairment in AD remains to be elucidated.

No Difference in Myosin Kinetics and Spatial Distribution of the Lever Arm in the Left and Right Ventricles of Human Hearts

PubMed Central

Duggal, Divya; Requena, S.; Nagwekar, Janhavi; Raut, Sangram; Rich, Ryan; Das, Hriday; Patel, Vipul; Gryczynski, Ignacy; Fudala, Rafal; Gryczynski, Zygmunt; Blair, Cheavar; Campbell, Kenneth S.; Borejdo, Julian

2017-01-01

The systemic circulation offers larger resistance to the blood flow than the pulmonary system. Consequently, the left ventricle (LV) must pump blood with more force than the right ventricle (RV). The question arises whether the stronger pumping action of the LV is due to a more efficient action of left ventricular myosin, or whether it is due to the morphological differences between ventricles. Such a question cannot be answered by studying the entire ventricles or myocytes because any observed differences would be wiped out by averaging the information obtained from trillions of myosin molecules present in a ventricle or myocyte. We therefore searched for the differences between single myosin molecules of the LV and RV of failing hearts In-situ. We show that the parameters that define the mechanical characteristics of working myosin (kinetic rates and the distribution of spatial orientation of myosin lever arm) were the same in both ventricles. These results suggest that there is no difference in the way myosin interacts with thin filaments in myocytes of failing hearts, and suggests that the difference in pumping efficiencies are caused by interactions between muscle proteins other than myosin or that they are purely morphological. PMID:29081749

Distinguishing between tectonic and lithologic controls on bedrock channel longitudinal profiles using cosmogenic 10Be erosion rates and channel steepness index

USGS Publications Warehouse

Cyr, Andrew J.; Granger, Darryl E.; Olivetti, Valerio; Molin, Paola

2014-01-01

Knickpoints in fluvial channel longitudinal profiles and channel steepness index values derived from digital elevation data can be used to detect tectonic structures and infer spatial patterns of uplift. However, changes in lithologic resistance to channel incision can also influence the morphology of longitudinal profiles. We compare the spatial patterns of both channel steepness index and cosmogenic 10Be-determined erosion rates from four landscapes in Italy, where the geology and tectonics are well constrained, to four theoretical predictions of channel morphologies, which can be interpreted as the result of primarily tectonic or lithologic controls. These data indicate that longitudinal profile forms controlled by unsteady or nonuniform tectonics can be distinguished from those controlled by nonuniform lithologic resistance. In each landscape the distribution of channel steepness index and erosion rates is consistent with model predictions and demonstrates that cosmogenic nuclide methods can be applied to distinguish between these two controlling factors.

The Effect of Stereoscopic ("3D") vs. 2D Presentation on Learning through Video and Film

NASA Astrophysics Data System (ADS)

Price, Aaron; Kasal, E.

2014-01-01

Two Eyes, 3D is a NSF-funded research project into the effects of stereoscopy on learning of highly spatial concepts. We report final results on one study of the project which tested the effect of stereoscopic presentation on learning outcomes of two short films about Type 1a supernovae and the morphology of the Milky Way. 986 adults watched either film, randomly distributed between stereoscopic and 2D presentation. They took a pre-test and post-test that included multiple choice and drawing tasks related to the spatial nature of the topics in the film. Orientation of the answering device was also tracked and a spatial cognition pre-test was given to control for prior spatial ability. Data collection took place at the Adler Planetarium's Space Visualization Lab and the project is run through the AAVSO.

Mapping the spatial distribution of star formation in cluster galaxies at z ~0.5 with the Grism Lens-Amplified Survey from Space (GLASS)

NASA Astrophysics Data System (ADS)

Vulcani, Benedetta

2015-08-01

What physical processes regulate star formation in dense environments? Understanding why galaxy evolution is environment dependent is one of the key questions of current astrophysics. I will present the first characterization of the spatial distribution of star formation in cluster galaxies at z~0.5, in order to quantify the role of different physical processes that are believed to be responsible for shutting down star formation. The analysis makes use of data from the Grism Lens-Amplified Survey from Space (GLASS), a large HST cycle-21 program targeting 10 massive galaxy clusters with extensive HST imaging from CLASH and the Frontier Field Initiative. The program consists of 140 primary and 140 parallel orbits of near-infrared WCF3 and optical ACS slitless grism observations, which result in 3D spectroscopy of hundreds of galaxies. The grism data are used to produce spatially resolved maps of the star formation density, while the stellar mass density and optical surface brightness are obtained from multiband imaging. I will describe quantitative measures of the spatial location and extend of the star formation rate, showing that about half of the cluster members with significant Halpha detection have diffused star formation, larger than the optical counterpart. This suggests that star formation occurs out to larger radii than the rest frame continuum. For some systems, nuclear star forming regions are found. I will also present a comparison between the Halpha distribution observed in cluster and field galaxies. The characterization of the spatial distribution of Halpha provides a new window, yet poorly exploited, on the mechanisms that regulate star formation and morphological transformation in dense environments.

Controls on the spatial variability of supraglacial channel morphology and network characteristics

NASA Astrophysics Data System (ADS)

King, L.

2015-12-01

Supraglacial streams are widespread and ubiquitous features of glacial ice surfaces around the world. They play an important role in the spatial and temporal distribution of meltwater on a glacier, moderating the flux of meltwater to the bed. They are themselves unique fluvial features in which erosion and deposition is achieved through thermal erosion of ice rather than alluvial substrate. As such, they are of both glaciological and fluvial geomorphological interest for both practical and theoretical reasons. However, little is known about their characteristics through space and time, or how these characteristics reflect external driving forces. This research aims to address these gaps by characterizing the spatial variability of supraglacial stream morphology across a range of glacier types and environmental conditions and identifying forcings that control channel form. Topographic data was analyzed from a range of glacier surface types including icesheets, pocket alpine glaciers, and outlet valley glaciers spanning a range of latitudes and elevations, comprising glaciers from Greenland, British Columbia, Alaska, Iceland and Sweden. Channels were extracted from the topographic data using an automated approach based on identifying topographic depressions at different size scales, in which the method was tested relative to manually digitized stream networks. Channel geomorphology was subsequently characterized according to planimetric and drainage network geometries. Resulting morphometric characteristics were analyzed with regards to endo and exogenic environmental forcings such as ice topography and characteristics and climatic forcings to identify the primary controls on supraglacial channel morphology and the response of these channels with respect to these controls.

Time-dependent landslide probability mapping

USGS Publications Warehouse

Campbell, Russell H.; Bernknopf, Richard L.; ,

1993-01-01

Case studies where time of failure is known for rainfall-triggered debris flows can be used to estimate the parameters of a hazard model in which the probability of failure is a function of time. As an example, a time-dependent function for the conditional probability of a soil slip is estimated from independent variables representing hillside morphology, approximations of material properties, and the duration and rate of rainfall. If probabilities are calculated in a GIS (geomorphic information system ) environment, the spatial distribution of the result for any given hour can be displayed on a map. Although the probability levels in this example are uncalibrated, the method offers a potential for evaluating different physical models and different earth-science variables by comparing the map distribution of predicted probabilities with inventory maps for different areas and different storms. If linked with spatial and temporal socio-economic variables, this method could be used for short-term risk assessment.

Spatial-frequency Fourier polarimetry of the complex degree of mutual anisotropy of linear and circular birefringence in the diagnostics of oncological changes in morphological structure of biological tissues

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ushenko, Yu A; Gorskii, M P; Dubolazov, A V

2012-08-31

Theory of polarisation-correlation analysis of laser images of histological sections of biopsy material from cervix tissue based on spatial frequency selection of linear and circular birefringence mechanisms is formulated. Comparative results of measuring the coordinate distributions of the complex degree of mutual anisotropy (CDMA), produced by fibrillar networks formed by myosin and collagen fibres of cervix tissue in different pathological conditions, namely, pre-cancer (dysplasia) and cancer (adenocarcinoma), are presented. The values and variation ranges of statistical (moments of the first - fourth order), correlation (excess-autocorrelation functions), and fractal (slopes of approximating curves and dispersion of extrema of logarithmic dependences ofmore » power spectra) parameters of the CDMA coordinate distributions are studied. Objective criteria for pathology diagnostics and differentiation of its severity degree are determined. (image processing)« less

Spatial-frequency Fourier polarimetry of the complex degree of mutual anisotropy of linear and circular birefringence in the diagnostics of oncological changes in morphological structure of biological tissues

NASA Astrophysics Data System (ADS)

Ushenko, Yu A.; Gorskii, M. P.; Dubolazov, A. V.; Motrich, A. V.; Ushenko, V. A.; Sidor, M. I.

2012-08-01

Theory of polarisation-correlation analysis of laser images of histological sections of biopsy material from cervix tissue based on spatial frequency selection of linear and circular birefringence mechanisms is formulated. Comparative results of measuring the coordinate distributions of the complex degree of mutual anisotropy (CDMA), produced by fibrillar networks formed by myosin and collagen fibres of cervix tissue in different pathological conditions, namely, pre-cancer (dysplasia) and cancer (adenocarcinoma), are presented. The values and variation ranges of statistical (moments of the first — fourth order), correlation (excess-autocorrelation functions), and fractal (slopes of approximating curves and dispersion of extrema of logarithmic dependences of power spectra) parameters of the CDMA coordinate distributions are studied. Objective criteria for pathology diagnostics and differentiation of its severity degree are determined.

Validation of a simple distributed sediment delivery approach in selected sub-basins of the River Inn catchment area

NASA Astrophysics Data System (ADS)

Reid, Lucas; Kittlaus, Steffen; Scherer, Ulrike

2015-04-01

For large areas without highly detailed data the empirical Universal Soil Loss Equation (USLE) is widely used to quantify soil loss. The problem though is usually the quantification of actual sediment influx into the rivers. As the USLE provides long-term mean soil loss rates, it is often combined with spatially lumped models to estimate the sediment delivery ratio (SDR). But it gets difficult with spatially lumped approaches in large catchment areas where the geographical properties have a wide variance. In this study we developed a simple but spatially distributed approach to quantify the sediment delivery ratio by considering the characteristics of the flow paths in the catchments. The sediment delivery ratio was determined using an empirical approach considering the slope, morphology and land use properties along the flow path as an estimation of travel time of the eroded particles. The model was tested against suspended solids measurements in selected sub-basins of the River Inn catchment area in Germany and Austria, ranging from the high alpine south to the Molasse basin in the northern part.

Lava flow-field morphology: A case study from Mount Etna, Sicily

NASA Technical Reports Server (NTRS)

Guest, J. E.; Hughes, J. W.; Duncan, A. M.

1987-01-01

The morphology of lava flows is often taken as an indicator of the broad chemical composition of the lava, especially when interpreting extraterrestrial volcanoes using spacecraft images. The historical lavas of the active volcano Mount Etna in Sicily provide an excellent opportunity to examine the controls on flow field morphology. In this study only flow produced by flank eruptions after the middle of the 18th century are examined. The final form of a flow-field may be more indicative of the internal plumbing of the volcano, which may control such factors as the effusion, rate, duration of eruption, volume of available magma, rate of de-gassing, and lava rheology. Different flow morphologies on Etna appear to be a good indicator of differing conditions within the volcanic pile. Thus the spatial distribution of different flow types on an extraterrestrial volcano may provide useful information about the plumbing conditions of that volcano, rather than necessarily providing information on the composition of materials erupted.

Understanding the spatial distribution of subtidal reef assemblages in the southern Baltic Sea using towed camera platform imagery

NASA Astrophysics Data System (ADS)

Beisiegel, Kolja; Darr, Alexander; Zettler, Michael L.; Friedland, René; Gräwe, Ulf; Gogina, Mayya

2018-07-01

Quantitative sampling of sessile assemblages on temperate subtidal rocky reefs is expensive and severely time-limited by logistics. However, knowledge about distribution patterns of critical and endangered species and habitats at different spatial scales is needed for effective marine management strategies. To gain information of sessile community distribution on broader spatial scales (>1 km), visual imaging was employed for the first time on a reef complex in the south-western Baltic Sea. Analysis of 3000 images along 6 transects (in total 18 km long) from 10 to 40 m depth revealed high natural variation in reef physical structure, with well-defined changes in sessile species richness, cover and composition. Overall 14 morphological groups could be distinguished by imaging and 4 distinct community groups associated with specific habitat requirements were identified. Depth remained the best descriptor. However, data indicate that light intensity, concentration of organic carbon and suspended particulate matter have an effect on reef community distribution. Compared to fully marine conditions, the study revealed a unique zonation pattern in the circalittoral zone of the Fehmarnbelt brackish transition area, with an unexpected reef habitat in the trench. We conclude that towed camera platform imagery might help to close the information gap regarding rocky reefs in the temperate subtidal. It provides a valuable tool to assess the main distribution patterns of sessile assemblages on rough terrain, potentially applicable for management and conservation planning.

Longitudinal patterns of fish assemblages, aquatic habitat, and water temperature in the Lower Crooked River, Oregon

USGS Publications Warehouse

Torgersen, Christian E.; Hockman-Wert, David P.; Bateman, Douglas S.; Leer, David W.; Gresswell, Robert E.

2007-01-01

The goal of this project was to examine longitudinal patterns in fish assemblages, aquatic habitat, and water temperature in the Lower Crooked River during summer conditions. Specific objectives were to (1) characterize the spatial distribution of native and non-native fishes, (2) describe variation in channel morphology, substrate composition, and water temperature, and (3) evaluate the associations between fishes, aquatic habitat, and water temperature.

Combined Use of Satellite Observations with Urban Surface Characteristics to Estimate PM Concentrations by Employing Mixed-Effects Models

NASA Astrophysics Data System (ADS)

Beloconi, Anton; Benas, Nikolaos; Chrysoulakis, Nektarios; Kamarianakis, Yiannis

2015-11-01

Linear mixed effects models were developed for the estimation of the average daily Particulate Matter (PM) concentration spatial distribution over the area of Greater London (UK). Both fine (PM2.5) and coarse (PM10) concentrations were predicted for the 2002- 2012 time period, based on satellite data. The latter included Aerosol Optical Thickness (AOT) at 3×3 km spatial resolution, as well as the Surface Relative Humidity, Surface Temperature and K-Index derived from MODIS (Moderate Resolution Imaging Spectroradiometer) sensor. For a meaningful interpretation of the association among these variables, all data were homogenized with regard to spatial support and geographic projection, thus addressing the change of support problem and leading to a valid statistical inference. To this end, spatial (2D) and spatio- temporal (3D) kriging techniques were applied to in-situ particulate matter concentrations and the leave-one- station-out cross-validation was performed on a daily level to gauge the quality of the predictions. Satellite- derived covariates displayed clear seasonal patterns; in order to work with data which is stationary in mean, for each covariate, deviations from its estimated annual profiles were computed using nonlinear least squares and nonlinear absolute deviations. High-resolution land- cover and morphology static datasets were additionally incorporated in the analysis in order to catch the effects of nearby emission sources and sequestration sites. For pairwise comparisons of the particulate matter concentration means at distinct land-cover classes, the pairwise comparisons method for unequal sample sizes, known as Tukey's method, was performed. The use of satellite-derived products allowed better assessment of space-time interactions of PM, since these daily spatial measurements were able to capture differences in PM concentrations between grid cells, while the use of high- resolution land-cover and morphology static datasets allowed accounting for local industrial, domestic and traffic related air pollution. The developed methods are expected to fully exploit ESA's new Sentinel-3 observations to estimate spatial distributions of both PM10 and PM2.5 concentrations in arbitrary cities.

Correlated Raman micro-spectroscopy and scanning electron microscopy analyses of flame retardants in environmental samples: a micro-analytical tool for probing chemical composition, origin and spatial distribution.

PubMed

Ghosal, Sutapa; Wagner, Jeff

2013-07-07

We present correlated application of two micro-analytical techniques: scanning electron microscopy/energy dispersive X-ray spectroscopy (SEM/EDS) and Raman micro-spectroscopy (RMS) for the non-invasive characterization and molecular identification of flame retardants (FRs) in environmental dusts and consumer products. The SEM/EDS-RMS technique offers correlated, morphological, molecular, spatial distribution and semi-quantitative elemental concentration information at the individual particle level with micrometer spatial resolution and minimal sample preparation. The presented methodology uses SEM/EDS analyses for rapid detection of particles containing FR specific elements as potential indicators of FR presence in a sample followed by correlated RMS analyses of the same particles for characterization of the FR sub-regions and surrounding matrices. The spatially resolved characterization enabled by this approach provides insights into the distributional heterogeneity as well as potential transfer and exposure mechanisms for FRs in the environment that is typically not available through traditional FR analysis. We have used this methodology to reveal a heterogeneous distribution of highly concentrated deca-BDE particles in environmental dust, sometimes in association with identifiable consumer materials. The observed coexistence of deca-BDE with consumer material in dust is strongly indicative of its release into the environment via weathering/abrasion of consumer products. Ingestion of such enriched FR particles in dust represents a potential for instantaneous exposure to high FR concentrations. Therefore, correlated SEM/RMS analysis offers a novel investigative tool for addressing an area of important environmental concern.

Do morphometric parameters and geological conditions determine chemistry of glacier surface ice? Spatial distribution of contaminants present in the surface ice of Spitsbergen glaciers (European Arctic).

PubMed

Lehmann, Sara; Gajek, Grzegorz; Chmiel, Stanisław; Polkowska, Żaneta

2016-12-01

The chemism of the glaciers is strongly determined by long-distance transport of chemical substances and their wet and dry deposition on the glacier surface. This paper concerns spatial distribution of metals, ions, and dissolved organic carbon, as well as the differentiation of physicochemical parameters (pH, electrical conductivity) determined in ice surface samples collected from four Arctic glaciers during the summer season in 2012. The studied glaciers represent three different morphological types: ground based (Blomlibreen and Scottbreen), tidewater which evolved to ground based (Renardbreen), and typical tidewater glacier (Recherchebreen). All of the glaciers are functioning as a glacial system and hence are subject to the same physical processes (melting, freezing) and the process of ice flowing resulting from the cross-impact force of gravity and topographic conditions. According to this hypothesis, the article discusses the correlation between morphometric parameters, changes in mass balance, geological characteristics of the glaciers and the spatial distribution of analytes on the surface of ice. A strong correlation (r = 0.63) is recorded between the aspect of glaciers and values of pH and ions, whereas dissolved organic carbon (DOC) depends on the minimum elevation of glaciers (r = 0.55) and most probably also on the development of the accumulation area. The obtained results suggest that although certain morphometric parameters largely determine the spatial distribution of analytes, also the geology of the bed of glaciers strongly affects the chemism of the surface ice of glaciers in the phase of strong recession.

Hydropedological interpretation of arid soilscapes, South Africa

NASA Astrophysics Data System (ADS)

Tinnefeld, Martin; Van Tol, Jacobus; Le Roux, Pieter

2017-04-01

Hydropedological investigations in arid regions are scarce due to the low the low contribution of these areas to water resources. Infrequent rainfall and few flow events also complicates measurements hydrological studies. Hydropedological studies, relating soil morphological properties and their spatial distribution to hydrological response, have been studied in detail in semi-arid, temperate, and sub-humid regions. In this paper, we investigated the relation between soil morphological properties and selected hydrological properties of soils in an arid landscape. We also studied the spatial distribution of the morphological properties to conceptualise the hydrological behaviour of different soilscapes in the area. A total of 806 soil profiles, covering an area of 4836 ha in the Northern Cape Province of South Africa were described and classified. The geology is dominated by Dwyka tillite overlain by aeolian sands with scattered Dolerite buttes. Thirteen modal profiles, representing the dominant soils types were selected, sampled at horizon level, and analysed for pH, CEC, iron, manganese, carbonate content. In situ measurements of saturated and near saturated (tension) hydraulic conductivity (Ks) were conducted to determine the water conducting macroporosity (WCM). Undisturbed cores were collected on which water retention characteristics were determined under laboratory conditions. Results indicate that dry soil colour, degree of structure development and the presence, absence, and abundance of carbonates as well as the degree of precipitation, are important indicators of hydrological response. For example; grey soils typically have lower Ks with higher storage capacity than soils dominated by red colours, whereas abundant carbonate precipitations in the soil matrix have lower WCM due to clogging of macropores. The dominant soil distribution pattern indicates that rapid vertical flow, through and out of the pedon, might contribute to recharge of an accumulative soil lateral flow at soil/rock interface on upper and midslope positions. Abundant carbonate precipitations decrease in consistency to valley bottom positions, indicating that this area serves as a periodic store of water during and after rain events.

Changes in tendon spatial frequency parameters with loading.

PubMed

Pearson, Stephen J; Engel, Aaron J; Bashford, Gregory R

2017-05-24

To examine and compare the loading related changes in micro-morphology of the patellar tendon. Fifteen healthy young males (age 19±3yrs, body mass 83±5kg) were utilised in a within subjects matched pairs design. B mode ultrasound images were taken in the sagittal plane of the patellar tendon at rest with the knee at 90° flexion. Repeat images were taken whilst the subjects were carrying out maximal voluntary isometric contractions. Spatial frequency parameters related to the tendon morphology were determined within regions of interest (ROI) from the B mode images at rest and during isometric contractions. A number of spatial parameters were observed to be significantly different between resting and contracted images (Peak spatial frequency radius (PSFR), axis ratio, spatial Q-factor, PSFR amplitude ratio, and the sum). These spatial frequency parameters were indicative of acute alterations in the tendon micro-morphology with loading. Acute loading modifies the micro-morphology of the tendon, as observed via spatial frequency analysis. Further research is warranted to explore its utility with regard to different loading induced micro-morphological alterations, as these could give valuable insight not only to aid strengthening of this tissue but also optimization of recovery from injury and treatment of conditions such as tendinopathies. Copyright © 2017 Elsevier Ltd. All rights reserved.

Statistical Analysis of TEC Anomalies Prior to M6.0+ Earthquakes During 2003-2014

NASA Astrophysics Data System (ADS)

Zhu, Fuying; Su, Fanfan; Lin, Jian

2018-04-01

There are many studies on the anomalous variations of the ionospheric TEC prior to large earthquakes. However, whether or not the morphological characteristics of the TEC anomalies in the daytime and at night are different is rarely studied. In the present paper, based on the total electron content (TEC) data from the global ionosphere map (GIM), we carry out a statistical survey on the spatial-temporal distribution of TEC anomalies before 1339 global M6.0+ earthquakes during 2003-2014. After excluding the interference of geomagnetic disturbance, the temporal and spatial distributions of ionospheric TEC anomalies prior to the earthquakes in the daytime and at night are investigated and compared. Except that the nighttime occurrence rates of the pre-earthquake ionospheric anomalies (PEIAs) are higher than those in the daytime, our analysis has not found any statistically significant difference in the spatial-temporal distribution of PEIAs in the daytime and at night. Moreover, the occurrence rates of pre-earthquake ionospheric TEC both positive anomalies and negative anomalies at night tend to increase slightly with the earthquake magnitude. Thus, we suggest that monitoring the ionospheric TEC changes at night might be a clue to reveal the relation between ionospheric disturbances and seismic activities.

Spatially Distributed Characterization of Catchment Dynamics Using Travel-Time Distributions

NASA Astrophysics Data System (ADS)

Heße, F.; Zink, M.; Attinger, S.

2015-12-01

The description of storage and transport of both water and solved contaminants in catchments is very difficult due to the high heterogeneity of the subsurface properties that govern their fate. This heterogeneity, combined with a generally limited knowledge about the subsurface, results in high degrees of uncertainty. As a result, stochastic methods are increasingly applied, where the relevant processes are modeled as being random. Within these methods, quantities like the catchment travel or residence time of a water parcel are described using probability density functions (PDF). The derivation of these PDF's is typically done by using the water fluxes and states of the catchment. A successful application of such frameworks is therefore contingent on a good quantification of these fluxes and states across the different spatial scales. The objective of this study is to use travel times for the characterization of an ca. 1000 square kilometer, humid catchment in Central Germany. To determine the states and fluxes, we apply the mesoscale Hydrological Model mHM, a spatially distributed hydrological model to the catchment. Using detailed data of precipitation, land cover, morphology and soil type as inputs, mHM is able to determine fluxes like recharge and evapotranspiration and states like soil moisture as outputs. Using these data, we apply the above theoretical framework to our catchment. By virtue of the aforementioned properties of mHM, we are able to describe the storage and release of water with a high spatial resolution. This allows for a comprehensive description of the flow and transport dynamics taking place in the catchment. The spatial distribution of such dynamics is then compared with land cover and soil moisture maps as well as driving forces like precipitation and temperature to determine the most predictive factors. In addition, we investigate how non-local data like the age distribution of discharge flows are impacted by, and therefore allow to infer, local properties of the catchment.

Dendritic trafficking faces physiologically critical speed-precision tradeoffs

DOE PAGES

Williams, Alex H.; O'Donnell, Cian; Sejnowski, Terrence J.; ...

2016-12-30

Nervous system function requires intracellular transport of channels, receptors, mRNAs, and other cargo throughout complex neuronal morphologies. Local signals such as synaptic input can regulate cargo trafficking, motivating the leading conceptual model of neuron-wide transport, sometimes called the ‘sushi-belt model’. Current theories and experiments are based on this model, yet its predictions are not rigorously understood. We formalized the sushi belt model mathematically, and show that it can achieve arbitrarily complex spatial distributions of cargo in reconstructed morphologies. However, the model also predicts an unavoidable, morphology dependent tradeoff between speed, precision and metabolic efficiency of cargo transport. With experimental estimatesmore » of trafficking kinetics, the model predicts delays of many hours or days for modestly accurate and efficient cargo delivery throughout a dendritic tree. In conclusion, these findings challenge current understanding of the efficacy of nucleus-to-synapse trafficking and may explain the prevalence of local biosynthesis in neurons.« less

Dendritic trafficking faces physiologically critical speed-precision tradeoffs

DOE Office of Scientific and Technical Information (OSTI.GOV)

Williams, Alex H.; O'Donnell, Cian; Sejnowski, Terrence J.

Nervous system function requires intracellular transport of channels, receptors, mRNAs, and other cargo throughout complex neuronal morphologies. Local signals such as synaptic input can regulate cargo trafficking, motivating the leading conceptual model of neuron-wide transport, sometimes called the ‘sushi-belt model’. Current theories and experiments are based on this model, yet its predictions are not rigorously understood. We formalized the sushi belt model mathematically, and show that it can achieve arbitrarily complex spatial distributions of cargo in reconstructed morphologies. However, the model also predicts an unavoidable, morphology dependent tradeoff between speed, precision and metabolic efficiency of cargo transport. With experimental estimatesmore » of trafficking kinetics, the model predicts delays of many hours or days for modestly accurate and efficient cargo delivery throughout a dendritic tree. In conclusion, these findings challenge current understanding of the efficacy of nucleus-to-synapse trafficking and may explain the prevalence of local biosynthesis in neurons.« less

Morphologic dating of fault scarps using airborne laser swath mapping (ALSM) data

USGS Publications Warehouse

Hilley, G.E.; Delong, S.; Prentice, C.; Blisniuk, K.; Arrowsmith, J.R.

2010-01-01

Models of fault scarp morphology have been previously used to infer the relative age of different fault scarps in a fault zone using labor-intensive ground surveying. We present a method for automatically extracting scarp morphologic ages within high-resolution digital topography. Scarp degradation is modeled as a diffusive mass transport process in the across-scarp direction. The second derivative of the modeled degraded fault scarp was normalized to yield the best-fitting (in a least-squared sense) scarp height at each point, and the signal-to-noise ratio identified those areas containing scarp-like topography. We applied this method to three areas along the San Andreas Fault and found correspondence between the mapped geometry of the fault and that extracted by our analysis. This suggests that the spatial distribution of scarp ages may be revealed by such an analysis, allowing the recent temporal development of a fault zone to be imaged along its length.

Mapping spatial patterns with morphological image processing

Treesearch

Peter Vogt; Kurt H. Riitters; Christine Estreguil; Jacek Kozak; Timothy G. Wade; James D. Wickham

2006-01-01

We use morphological image processing for classifying spatial patterns at the pixel level on binary land-cover maps. Land-cover pattern is classified as 'perforated,' 'edge,' 'patch,' and 'core' with higher spatial precision and thematic accuracy compared to a previous approach based on image convolution, while retaining the...

Neutrophils establish rapid and robust WAVE complex polarity in an actin-dependent fashion.

PubMed

Millius, Arthur; Dandekar, Sheel N; Houk, Andrew R; Weiner, Orion D

2009-02-10

Asymmetric intracellular signals enable cells to migrate in response to external cues. The multiprotein WAVE (also known as SCAR or WASF) complex activates the actin-nucleating Arp2/3 complex [1-4] and localizes to propagating "waves," which direct actin assembly during neutrophil migration [5, 6]. Here, we observe similar WAVE complex dynamics in other mammalian cells and analyze WAVE complex dynamics during establishment of neutrophil polarity. Earlier models proposed that spatially biased generation [7] or selection of protrusions [8] enables chemotaxis. These models require existing morphological polarity to control protrusions. We show that spatially biased generation and selection of WAVE complex recruitment also occur in morphologically unpolarized neutrophils during development of their first protrusions. Additionally, several mechanisms limit WAVE complex recruitment during polarization and movement: Intrinsic cues restrict WAVE complex distribution during establishment of polarity, and asymmetric intracellular signals constrain it in morphologically polarized cells. External gradients can overcome both intrinsic biases and control WAVE complex localization. After latrunculin-mediated inhibition of actin polymerization, addition and removal of agonist gradients globally recruits and releases the WAVE complex from the membrane. Under these conditions, the WAVE complex no longer polarizes, despite the presence of strong external gradients. Thus, actin polymer and the WAVE complex reciprocally interact during polarization.

From global change to a butterfly flapping: biophysics and behaviour affect tropical climate change impacts.

PubMed

Bonebrake, Timothy C; Boggs, Carol L; Stamberger, Jeannie A; Deutsch, Curtis A; Ehrlich, Paul R

2014-10-22

Difficulty in characterizing the relationship between climatic variability and climate change vulnerability arises when we consider the multiple scales at which this variation occurs, be it temporal (from minute to annual) or spatial (from centimetres to kilometres). We studied populations of a single widely distributed butterfly species, Chlosyne lacinia, to examine the physiological, morphological, thermoregulatory and biophysical underpinnings of adaptation to tropical and temperate climates. Microclimatic and morphological data along with a biophysical model documented the importance of solar radiation in predicting butterfly body temperature. We also integrated the biophysics with a physiologically based insect fitness model to quantify the influence of solar radiation, morphology and behaviour on warming impact projections. While warming is projected to have some detrimental impacts on tropical ectotherms, fitness impacts in this study are not as negative as models that assume body and air temperature equivalence would suggest. We additionally show that behavioural thermoregulation can diminish direct warming impacts, though indirect thermoregulatory consequences could further complicate predictions. With these results, at multiple spatial and temporal scales, we show the importance of biophysics and behaviour for studying biodiversity consequences of global climate change, and stress that tropical climate change impacts are likely to be context-dependent. © 2014 The Author(s) Published by the Royal Society. All rights reserved.

From global change to a butterfly flapping: biophysics and behaviour affect tropical climate change impacts

PubMed Central

Bonebrake, Timothy C.; Boggs, Carol L.; Stamberger, Jeannie A.; Deutsch, Curtis A.; Ehrlich, Paul R.

2014-01-01

Difficulty in characterizing the relationship between climatic variability and climate change vulnerability arises when we consider the multiple scales at which this variation occurs, be it temporal (from minute to annual) or spatial (from centimetres to kilometres). We studied populations of a single widely distributed butterfly species, Chlosyne lacinia, to examine the physiological, morphological, thermoregulatory and biophysical underpinnings of adaptation to tropical and temperate climates. Microclimatic and morphological data along with a biophysical model documented the importance of solar radiation in predicting butterfly body temperature. We also integrated the biophysics with a physiologically based insect fitness model to quantify the influence of solar radiation, morphology and behaviour on warming impact projections. While warming is projected to have some detrimental impacts on tropical ectotherms, fitness impacts in this study are not as negative as models that assume body and air temperature equivalence would suggest. We additionally show that behavioural thermoregulation can diminish direct warming impacts, though indirect thermoregulatory consequences could further complicate predictions. With these results, at multiple spatial and temporal scales, we show the importance of biophysics and behaviour for studying biodiversity consequences of global climate change, and stress that tropical climate change impacts are likely to be context-dependent. PMID:25165769

Determining the morphology of polystyrene-block-poly(2-vinylpyridine) micellar reactors for ZnO nanoparticle synthesis.

PubMed

El-Atwani, Osman; El-Atwani, Osman C; Aytun, Taner; Mutaf, Omer Faruk; Srot, Vesna; van Aken, Peter A; Ow-Yang, Cleva W

2010-05-18

We report the use of reverse PS-b-P2VP diblock copolymer micelles as true nanoscale-sized reactor vessels to synthesize ZnO nanoparticles. The reverse micelles were formed in toluene and then sequentially loaded with zinc acetate dihydrate and tetramethylammonium hydroxide reactants. Moreover, high spatial resolution Z-contrast imaging and EDX spectroscopy techniques were used to confirm the segregation of the Zn cation to the core of the loaded micelles. Determining the chemical distribution with high nanoscale spatial resolution is shown to complement the less direct characterization by AFM, DLS and FTIR, thus demonstrating broader implications for the characterization of hybrid nanocomposite systems.

Investigating the galactic Supernova Remnant Kes 78 with XMM-Newton

NASA Astrophysics Data System (ADS)

Miceli, M.; Bamba, A.; Orlando, S.; Bocchino, F.

2016-06-01

The galactic supernova remnant Kes 78 is associated with a HESS gamma-ray source and its X-ray emission has been recently revealed by Suzaku observations which have found indications for a hard X-ray component in the spectra. We analyzed an XMM-Newton EPIC observation of Kes 78 and studied the spatial distribution of the physical and chemical properties of the X-ray emitting plasma. The EPIC data unveiled a very complex morphology for the soft X-ray emission. We performed image analysis and spatially resolved spectral analysis finding indications for the interaction of the remnant with a local molecular cloud. Finally, we investigated the origin of the hard X-ray emitting component.

Investigating the Galactic supernova remnant Kes 78 with XMM-Newton

NASA Astrophysics Data System (ADS)

Miceli, Marco; Bamba, Aya; Orlando, Salvatore; Bocchino, Fabrizio

2016-06-01

The galactic supernova remnant Kes 78 is associated with a HESS gamma-ray source and its X-ray emission has been recently revealed by Suzaku observations which have found indications for a hard X-ray component in the spectra. We analyzed an XMM-Newton EPIC observation of Kes 78 and studied the spatial distribution of the physical and chemical properties of the X-ray emitting plasma. The EPIC data unveiled a very complex morphology for the soft X-ray emission. We performed image analysis and spatially resolved spectral analysis finding indications for the interaction of the remnant with a local molecular cloud. Finally, we investigated the origin of the hard X-ray emitting component.

Geologic and physiographic controls on bed-material yield, transport, and channel morphology for alluvial and bedrock rivers, western Oregon

NASA Astrophysics Data System (ADS)

O'Connor, J. E.; Wallick, R.; Mangano, J.; Anderson, S. W.; Jones, K. L.; Keith, M. K.

2012-12-01

The rivers of western Oregon have channel beds ranging from fully alluvial to bedrock. A local history of in-stream gravel mining in conjunction with ongoing permitting concerns with respect to future extraction have prompted a series of investigations of bed-material production, transport and channel morphology across this spectrum of channel types. In western Oregon, it appears that the distribution of alluvial and bedrock channels (and many aspects of river morphology and behavior) are largely controlled by regional lithologies and the downstream consequences of different rates of bed-material supply and clast comminution. In particular, the Klamath Terrane has elevated erosion rates, steep slopes, and rock types resistant to abrasion, resulting in gravel-bed alluvial channels with high bed-material transport rates. By contrast, Coast Range drainages underlain by large areas of soft sedimentary rocks have bedrock channels owing to exceptionally rapid rates of bed-material attrition during transport. The resulting spatially distributed network controls on the distribution of alluvial and non-alluvial channels likely complicate linkages between rock uplift, bedrock incision, bed-material grain size, and profile concavity. Additionally, the alluvial channels have distinct morphologic characteristics, some of which relate strongly to transport rates. In particular, bar area correlates with estimates of bed-material flux, and this correlation is an upper bound for bar-area observations for non-alluvial reaches. Similarly, an index for transport capacity scaled by bed-material grain size correlates with estimated bed-material flux for alluvial rivers, but not for the non-alluvial rivers. Bedrock and mixed-bed channels in western Oregon have few evident broad-scale patterns or relations among reach-scale morphologic measurements or with estimated transport rates, perhaps indicating that very local lithologic, hydraulic and bed-material supply conditions exert more control on channel morphology.

The Interplay between Environmental Filtering and Spatial Processes in Structuring Communities: The Case of Neotropical Snake Communities

PubMed Central

Cavalheri, Hamanda; Both, Camila; Martins, Marcio

2015-01-01

Both habitat filters and spatial processes can influence community structure. Space alone affects species immigration from the regional species pool, whereas habitat filters affect species distribution and inter-specific interactions. This study aimed to understand how the interplay between environmental and geographical processes influenced the structure of Neotropical snake communities in different habitat types. We selected six studies that sampled snakes in forests, four conducted in savannas and two in grasslands (the latter two are grouped in a non-forest category). We used the net relatedness and nearest taxon indices to assess phylogenetic structure within forest and non-forest areas. We also used the phylogenetic fuzzy-weighting algorithm to characterize phylogenetic structure across communities and the relation of phylogenetic composition patterns to habitat type, structure, and latitude. Finally, we tested for morphological trait convergence and phylogenetic niche conservatism using four forest and four non-forest areas for which morphological data were available. Community phylogenetic composition changed across forest and non-forest areas suggesting that environmental filtering influences community structure. Species traits were affected by habitat type, indicating convergence at the metacommunity level. Tail length, robustness, and number of ventral scales maximized community convergence among forest and non-forest areas. The observed patterns suggested environmental filtering, indicating that less vertically structured habitats represent a strong filter. Despite the fact that phylogenetic structure was not detected individually for each community, we observed a trend towards communities composed by more closely related species in higher latitudes and more overdispersed compositions in lower latitudes. Such pattern suggests that the limited distribution of major snake lineages constrained species distributions. Structure indices for each community were also related to habitat type, showing that communities from non-forest areas tend to be more clustered. Our study showed that both environmental filtering and spatial gradients play important roles in shaping the composition of Neotropical snake communities. PMID:26061038

The Interplay between Environmental Filtering and Spatial Processes in Structuring Communities: The Case of Neotropical Snake Communities.

PubMed

Cavalheri, Hamanda; Both, Camila; Martins, Marcio

2015-01-01

Both habitat filters and spatial processes can influence community structure. Space alone affects species immigration from the regional species pool, whereas habitat filters affect species distribution and inter-specific interactions. This study aimed to understand how the interplay between environmental and geographical processes influenced the structure of Neotropical snake communities in different habitat types. We selected six studies that sampled snakes in forests, four conducted in savannas and two in grasslands (the latter two are grouped in a non-forest category). We used the net relatedness and nearest taxon indices to assess phylogenetic structure within forest and non-forest areas. We also used the phylogenetic fuzzy-weighting algorithm to characterize phylogenetic structure across communities and the relation of phylogenetic composition patterns to habitat type, structure, and latitude. Finally, we tested for morphological trait convergence and phylogenetic niche conservatism using four forest and four non-forest areas for which morphological data were available. Community phylogenetic composition changed across forest and non-forest areas suggesting that environmental filtering influences community structure. Species traits were affected by habitat type, indicating convergence at the metacommunity level. Tail length, robustness, and number of ventral scales maximized community convergence among forest and non-forest areas. The observed patterns suggested environmental filtering, indicating that less vertically structured habitats represent a strong filter. Despite the fact that phylogenetic structure was not detected individually for each community, we observed a trend towards communities composed by more closely related species in higher latitudes and more overdispersed compositions in lower latitudes. Such pattern suggests that the limited distribution of major snake lineages constrained species distributions. Structure indices for each community were also related to habitat type, showing that communities from non-forest areas tend to be more clustered. Our study showed that both environmental filtering and spatial gradients play important roles in shaping the composition of Neotropical snake communities.

The Emission and Distribution of Dust of the Torus of NGC 1068

NASA Astrophysics Data System (ADS)

Lopez-Rodriguez, Enrique; Fuller, Lindsay; Alonso-Herrero, Almudena; Efstathiou, Andreas; Ichikawa, Kohei; Levenson, Nancy A.; Packham, Chris; Radomski, James; Ramos Almeida, Cristina; Benford, Dominic J.; Berthoud, Marc; Hamilton, Ryan; Harper, Doyal; Kovávcs, Attila; Santos, Fabio P.; Staguhn, J.; Herter, Terry

2018-06-01

We present observations of NGC 1068 covering the 19.7–53.0 μm wavelength range using FORCAST and HAWC+ on board SOFIA. Using these observations, high-angular-resolution infrared (IR) and submillimeter observations, we find an observational turnover of the torus emission in the 30–40 μm wavelength range with a characteristic temperature of 70–100 K. This component is clearly different from the diffuse extended emission in the narrow line and star formation regions at 10–100 μm within the central 700 pc. We compute 2.2–432 μm 2D images using the best inferred CLUMPY torus model based on several nuclear spectral energy distribution (SED) coverages. We find that when 1–20 μm SED is used, the inferred result gives a small torus size (<4 pc radius) and a steep radial dust distribution. The computed torus using the 1–432 μm SED provides comparable torus sizes, {5.1}-0.4+0.4 pc radius, and morphology to the recently resolved 432 μm Atacama Large Millimeter Array observations. This result indicates that the 1–20 μm wavelength range is not able to probe the full extent of the torus. The characterization of the turnover emission of the torus using the 30–60 μm wavelength range is sensitive to the detection of cold dust in the torus. The morphology of the dust emission in our 2D image at 432 μm is spatially coincident with the cloud distribution, while the morphology of the emission in the 1–20 μm wavelength range shows an elongated morphology perpendicular to the cloud distribution. We find that our 2D CLUMPY torus image at 12 μm can produce comparable results to those observed using IR interferometry.

Very high elevation water ice clouds on Mars: Their morphology and temporal behavior

NASA Technical Reports Server (NTRS)

Jaquin, Fred

1988-01-01

Quantitative analysis of Viking images of the martian planetary limb has uncovered the existence and temporal behavior of water ice clouds that form between 50 and 90 km elevation. These clouds show a seasonal behavior that may be correlated with lower atmosphere dynamics. Enhanced vertical mixing of the atmosphere as Mars nears perihelion is hypothesized as the cause of the seasonal dependence, and the diurnal dependence is explained by the temporal behavior of the martian diurnal thermal tide. Viking images also provide a data set of the vertical distribution of aerosols in the martian atmosphere. The temporal and spatial distribution of aerosols are characterized.

Microstructure characterization of multi-phase composites and utilization of phase change materials and recycled rubbers in cementitious materials

NASA Astrophysics Data System (ADS)

Meshgin, Pania

2011-12-01

This research focuses on two important subjects: (1) Characterization of heterogeneous microstructure of multi-phase composites and the effect of microstructural features on effective properties of the material. (2) Utilizations of phase change materials and recycled rubber particles from waste tires to improve thermal properties of insulation materials used in building envelopes. Spatial pattern of multi-phase and multidimensional internal structures of most composite materials are highly random. Quantitative description of the spatial distribution should be developed based on proper statistical models, which characterize the morphological features. For a composite material with multi-phases, the volume fraction of the phases as well as the morphological parameters of the phases have very strong influences on the effective property of the composite. These morphological parameters depend on the microstructure of each phase. This study intends to include the effect of higher order morphological details of the microstructure in the composite models. The higher order statistics, called two-point correlation functions characterize various behaviors of the composite at any two points in a stochastic field. Specifically, correlation functions of mosaic patterns are used in the study for characterizing transport properties of composite materials. One of the most effective methods to improve energy efficiency of buildings is to enhance thermal properties of insulation materials. The idea of using phase change materials and recycled rubber particles such as scrap tires in insulation materials for building envelopes has been studied.

A spatial analysis of hierarchical waste transport structures under growing demand.

PubMed

Tanguy, Audrey; Glaus, Mathias; Laforest, Valérie; Villot, Jonathan; Hausler, Robert

2016-10-01

The design of waste management systems rarely accounts for the spatio-temporal evolution of the demand. However, recent studies suggest that this evolution affects the planning of waste management activities like the choice and location of treatment facilities. As a result, the transport structure could also be affected by these changes. The objective of this paper is to study the influence of the spatio-temporal evolution of the demand on the strategic planning of a waste transport structure. More particularly this study aims at evaluating the effect of varying spatial parameters on the economic performance of hierarchical structures (with one transfer station). To this end, three consecutive generations of three different spatial distributions were tested for hierarchical and non-hierarchical transport structures based on costs minimization. Results showed that a hierarchical structure is economically viable for large and clustered spatial distributions. The distance parameter was decisive but the loading ratio of trucks and the formation of clusters of sources also impacted the attractiveness of the transfer station. Thus the territories' morphology should influence strategies as regards to the installation of transfer stations. The use of spatial-explicit tools such as the transport model presented in this work that take into account the territory's evolution are needed to help waste managers in the strategic planning of waste transport structures. © The Author(s) 2016.

A three-dimensional spatial mapping approach to quantify fine-scale heterogeneity among leaves within canopies1

PubMed Central

Wingfield, Jenna L.; Ruane, Lauren G.; Patterson, Joshua D.

2017-01-01

Premise of the study: The three-dimensional structure of tree canopies creates environmental heterogeneity, which can differentially influence the chemistry, morphology, physiology, and/or phenology of leaves. Previous studies that subdivide canopy leaves into broad categories (i.e., “upper/lower”) fail to capture the differences in microenvironments experienced by leaves throughout the three-dimensional space of a canopy. Methods: We use a three-dimensional spatial mapping approach based on spherical polar coordinates to examine the fine-scale spatial distributions of photosynthetically active radiation (PAR) and the concentration of ultraviolet (UV)-absorbing compounds (A300) among leaves within the canopies of black mangroves (Avicennia germinans). Results: Linear regressions revealed that interior leaves received less PAR and produced fewer UV-absorbing compounds than leaves on the exterior of the canopy. By allocating more UV-absorbing compounds to the leaves on the exterior of the canopy, black mangroves may be maximizing UV-protection while minimizing biosynthesis of UV-absorbing compounds. Discussion: Three-dimensional spatial mapping provides an inexpensive and portable method to detect fine-scale differences in environmental and biological traits within canopies. We used it to understand the relationship between PAR and A300, but the same approach can also be used to identify traits associated with the spatial distribution of herbivores, pollinators, and pathogens. PMID:29188145

Chemical release from single-PMMA microparticles monitored by CARS microscopy

NASA Astrophysics Data System (ADS)

Enejder, Annika; Svedberg, Fredrik; Nordstierna, Lars; Nydén, Magnus

2011-03-01

Microparticles loaded with antigens, proteins, DNA, fungicides, and other functional agents emerge as ideal vehicles for vaccine, drug delivery, genetic therapy, surface- and crop protection. The microscopic size of the particles and their collective large specific surface area enables highly active and localized release of the functional substance. In order to develop designs with release profiles optimized for the specific application, it is desirable to map the distribution of the active substance within the particle and how parameters such as size, material and morphology affect release rates at single particle level. Current imaging techniques are limited in resolution, sensitivity, image acquisition time, or sample treatment, excluding dynamic studies of active agents in microparticles. Here, we demonstrate that the combination of CARS and THG microscopy can successfully be used, by mapping the spatial distribution and release rates of the fungicide and food preservative IPBC from different designs of PMMA microparticles at single-particle level. By fitting a radial diffusion model to the experimental data, single particle diffusion coefficients can be determined. We show that release rates are highly dependent on the size and morphology of the particles. Hence, CARS and THG microscopy provides adequate sensitivity and spatial resolution for quantitative studies on how singleparticle properties affect the diffusion of active agents at microscopic level. This will aid the design of innovative microencapsulating systems for controlled release.

Characterizing Three-Dimensional Mixing Process in a River Confluence using Hydro-acoustical Backscatter and Flow Measurement

NASA Astrophysics Data System (ADS)

Son, Geunsoo; Kim, Dongsu; Kim, YoungDo; Lyu, Siwan; Kim, Seojun

2017-04-01

River confluences are zones where two rivers with different geomorphic and hydraulic characteristics amalgamate, resulting in rapid change in terms of flow regime, sediment entrainment and hydraulic geometry. In these confluence zones, the flow structure is basically complicated responded with concurrent mixing of physical and chemical aquatic properties, and continuous channel morphology could be changed due to erosion and sedimentation. In addition, the confluences are regions in which two rivers join and play an important role in river ecology. In order to characterize the mixing process of confluence for understanding the impacts of a river on the other river, therefore, it has been crucial to analyze the spatial mixing patterns for main streams depending on various inflow conditions of tributaries. However, most conventional studies have mostly relied upon hydraulic or water quality numerical models for understanding mixing pattern analysis of confluences, due to the difficulties to acquire a wide spatial range of in-situ data especially for characterizing this kind of mixing process. Even with intensive in-situ measurements, those researches tended to focus mainly on the hydraulic characteristics such as the flow and morphological complexity of confluence, so that very few studies comprehensively included sediment variation with flow at the same time. In this study, subsequently, flow and sediment mixing characteristics were concurrently investigated in the confluence between Nakdong and Nam river in South Korea, where it has been frequently questioned to determine how Nam river affects Nakdong river that recently have suffered various environmental problems such as green algae bloom and erosion/deposition in the confluence. We basically examined the mixing characteristics of confluence by using acoustic Doppler current profilers (ADCPs) which were used to measure hydraulic factors such as flow rate and depth, as well as measuring the suspended sediment concentration by using acoustic backscatter. Cross-sectional ADCP measurements in a confluence were collected with high spatial resolution in order to analyze the details of spatial distribution in the perspective of the three-dimensional mixing patterns of flow and sediment, where backscatters (or SNR) measured from ADCPs were used to track sediment mixing assuming that it could be a surrogate to estimate the suspended sediment concentration. Raw backscatter data were corrected by considering the beam spreading and absorption by water. Also, an optical Laser diffraction instrument (LISST) was used to verify the method of acoustic backscatter and to collect the particle size distribution of main stream and tributary. In addition, image-based spatial distributions of sediment mixture in the confluence were monitored in various flow conditions by using an unmanned aerial vehicle (UAV), which were compared with the spatial distribution of acoustic backscatter. As results, we found that when acoustic backscatter and flow measurements by ADCPs were well processed, they could be proper indicators to identify the spatial patterns of the three-dimensional mixing process between two rivers.

The importance of taxonomic resolution for additive beta diversity as revealed through DNA barcoding.

PubMed

Bringloe, Trevor T; Cottenie, Karl; Martin, Gillian K; Adamowicz, Sarah J

2016-12-01

Additive diversity partitioning (α, β, and γ) is commonly used to study the distribution of species-level diversity across spatial scales. Here, we first investigate whether published studies of additive diversity partitioning show signs of difficulty attaining species-level resolution due to inherent limitations with morphological identifications. Second, we present a DNA barcoding approach to delineate specimens of stream caddisfly larvae (order Trichoptera) and consider the importance of taxonomic resolution on classical (additive) measures of beta (β) diversity. Caddisfly larvae were sampled using a hierarchical spatial design in two regions (subarctic Churchill, Manitoba, Canada; temperate Pennsylvania, USA) and then additively partitioned according to Barcode Index Numbers (molecular clusters that serve as a proxy for species), genus, and family levels; diversity components were expressed as proportional species turnover. We screened 114 articles of additive diversity partitioning and found that a third reported difficulties with achieving species-level identifications, with a clear taxonomic tendency towards challenges identifying invertebrate taxa. Regarding our own study, caddisfly BINs appeared to show greater subregional turnover (e.g., proportional additive β) compared to genus or family levels. Diversity component studies failing to achieve species resolution due to morphological identifications may therefore be underestimating diversity turnover at larger spatial scales.

Universal Spatial Correlation Functions for Describing and Reconstructing Soil Microstructure

PubMed Central

Skvortsova, Elena B.; Mallants, Dirk

2015-01-01

Structural features of porous materials such as soil define the majority of its physical properties, including water infiltration and redistribution, multi-phase flow (e.g. simultaneous water/air flow, or gas exchange between biologically active soil root zone and atmosphere) and solute transport. To characterize soil microstructure, conventional soil science uses such metrics as pore size and pore-size distributions and thin section-derived morphological indicators. However, these descriptors provide only limited amount of information about the complex arrangement of soil structure and have limited capability to reconstruct structural features or predict physical properties. We introduce three different spatial correlation functions as a comprehensive tool to characterize soil microstructure: 1) two-point probability functions, 2) linear functions, and 3) two-point cluster functions. This novel approach was tested on thin-sections (2.21×2.21 cm2) representing eight soils with different pore space configurations. The two-point probability and linear correlation functions were subsequently used as a part of simulated annealing optimization procedures to reconstruct soil structure. Comparison of original and reconstructed images was based on morphological characteristics, cluster correlation functions, total number of pores and pore-size distribution. Results showed excellent agreement for soils with isolated pores, but relatively poor correspondence for soils exhibiting dual-porosity features (i.e. superposition of pores and micro-cracks). Insufficient information content in the correlation function sets used for reconstruction may have contributed to the observed discrepancies. Improved reconstructions may be obtained by adding cluster and other correlation functions into reconstruction sets. Correlation functions and the associated stochastic reconstruction algorithms introduced here are universally applicable in soil science, such as for soil classification, pore-scale modelling of soil properties, soil degradation monitoring, and description of spatial dynamics of soil microbial activity. PMID:26010779

Universal spatial correlation functions for describing and reconstructing soil microstructure.

PubMed

Karsanina, Marina V; Gerke, Kirill M; Skvortsova, Elena B; Mallants, Dirk

2015-01-01

Structural features of porous materials such as soil define the majority of its physical properties, including water infiltration and redistribution, multi-phase flow (e.g. simultaneous water/air flow, or gas exchange between biologically active soil root zone and atmosphere) and solute transport. To characterize soil microstructure, conventional soil science uses such metrics as pore size and pore-size distributions and thin section-derived morphological indicators. However, these descriptors provide only limited amount of information about the complex arrangement of soil structure and have limited capability to reconstruct structural features or predict physical properties. We introduce three different spatial correlation functions as a comprehensive tool to characterize soil microstructure: 1) two-point probability functions, 2) linear functions, and 3) two-point cluster functions. This novel approach was tested on thin-sections (2.21×2.21 cm2) representing eight soils with different pore space configurations. The two-point probability and linear correlation functions were subsequently used as a part of simulated annealing optimization procedures to reconstruct soil structure. Comparison of original and reconstructed images was based on morphological characteristics, cluster correlation functions, total number of pores and pore-size distribution. Results showed excellent agreement for soils with isolated pores, but relatively poor correspondence for soils exhibiting dual-porosity features (i.e. superposition of pores and micro-cracks). Insufficient information content in the correlation function sets used for reconstruction may have contributed to the observed discrepancies. Improved reconstructions may be obtained by adding cluster and other correlation functions into reconstruction sets. Correlation functions and the associated stochastic reconstruction algorithms introduced here are universally applicable in soil science, such as for soil classification, pore-scale modelling of soil properties, soil degradation monitoring, and description of spatial dynamics of soil microbial activity.

The Spatial Distribution of the Young Stellar Clusters in the Star-forming Galaxy NGC 628

NASA Astrophysics Data System (ADS)

Grasha, K.; Calzetti, D.; Adamo, A.; Kim, H.; Elmegreen, B. G.; Gouliermis, D. A.; Aloisi, A.; Bright, S. N.; Christian, C.; Cignoni, M.; Dale, D. A.; Dobbs, C.; Elmegreen, D. M.; Fumagalli, M.; Gallagher, J. S., III; Grebel, E. K.; Johnson, K. E.; Lee, J. C.; Messa, M.; Smith, L. J.; Ryon, J. E.; Thilker, D.; Ubeda, L.; Wofford, A.

2015-12-01

We present a study of the spatial distribution of the stellar cluster populations in the star-forming galaxy NGC 628. Using Hubble Space Telescope broadband WFC3/UVIS UV and optical images from the Treasury Program LEGUS (Legacy ExtraGalactic UV Survey), we have identified 1392 potential young (≲ 100 Myr) stellar clusters within the galaxy using a combination of visual inspection and automatic selection. We investigate the clustering of these young stellar clusters and quantify the strength and change of clustering strength with scale using the two-point correlation function. We also investigate how image boundary conditions and dust lanes affect the observed clustering. The distribution of the clusters is well fit by a broken power law with negative exponent α. We recover a weighted mean index of α ∼ -0.8 for all spatial scales below the break at 3.″3 (158 pc at a distance of 9.9 Mpc) and an index of α ∼ -0.18 above 158 pc for the accumulation of all cluster types. The strength of the clustering increases with decreasing age and clusters older than 40 Myr lose their clustered structure very rapidly and tend to be randomly distributed in this galaxy, whereas the mass of the star cluster has little effect on the clustering strength. This is consistent with results from other studies that the morphological hierarchy in stellar clustering resembles the same hierarchy as the turbulent interstellar medium.

Towards a 3d Spatial Urban Energy Modelling Approach

NASA Astrophysics Data System (ADS)

Bahu, J.-M.; Koch, A.; Kremers, E.; Murshed, S. M.

2013-09-01

Today's needs to reduce the environmental impact of energy use impose dramatic changes for energy infrastructure and existing demand patterns (e.g. buildings) corresponding to their specific context. In addition, future energy systems are expected to integrate a considerable share of fluctuating power sources and equally a high share of distributed generation of electricity. Energy system models capable of describing such future systems and allowing the simulation of the impact of these developments thus require a spatial representation in order to reflect the local context and the boundary conditions. This paper describes two recent research approaches developed at EIFER in the fields of (a) geo-localised simulation of heat energy demand in cities based on 3D morphological data and (b) spatially explicit Agent-Based Models (ABM) for the simulation of smart grids. 3D city models were used to assess solar potential and heat energy demand of residential buildings which enable cities to target the building refurbishment potentials. Distributed energy systems require innovative modelling techniques where individual components are represented and can interact. With this approach, several smart grid demonstrators were simulated, where heterogeneous models are spatially represented. Coupling 3D geodata with energy system ABMs holds different advantages for both approaches. On one hand, energy system models can be enhanced with high resolution data from 3D city models and their semantic relations. Furthermore, they allow for spatial analysis and visualisation of the results, with emphasis on spatially and structurally correlations among the different layers (e.g. infrastructure, buildings, administrative zones) to provide an integrated approach. On the other hand, 3D models can benefit from more detailed system description of energy infrastructure, representing dynamic phenomena and high resolution models for energy use at component level. The proposed modelling strategies conceptually and practically integrate urban spatial and energy planning approaches. The combined modelling approach that will be developed based on the described sectorial models holds the potential to represent hybrid energy systems coupling distributed generation of electricity with thermal conversion systems.

Impact of scale on morphological spatial pattern of forest

Treesearch

Katarzyna Ostapowicz; Peter Vogt; Kurt H. Riitters; Jacek Kozak; Christine Estreguil

2008-01-01

Assessing and monitoring landscape pattern structure from multi-scale land-cover maps can utilize morphological spatial pattern analysis (MSPA), only if various influences of scale are known and taken into account. This paper lays part of the foundation for applying MSPA analysis in landscape monitoring by quantifying scale effects on six classes of spatial patterns...

Assessing Controls on the Geometry and Dimensions of Modern Barrier Islands

NASA Astrophysics Data System (ADS)

Mulhern, J.; Johnson, C. L.; Martin, J. M.

2015-12-01

Barrier islands are highly ephemeral features, shaped by wave, tide, and storm energy. The processes that govern the size, shape, and motion of barrier islands are not well constrained, yet central to coastal dynamics. While the global distribution of barrier islands has been mapped and assessed, there is little consensus on the forces controlling barrier island formation, motion, or preservation. This study presents a new semi-global database of modern barrier islands to better understand their morphology and spatial distribution. We have mapped, in Google Earth, the subaerial extent of >350 barrier islands and spits, measuring spatial characteristic such as exposed area, perimeter, length, and width. These objects are cross-referenced with parameters that potentially control morphology, including tidal range, wave height, climate, distance from the continental shelf, proximity to fluvial output, and tectonic setting. This approach provides a more optimal framework to assess controls on coastal features, including barrier island morphology, and to investigate potential geometric scaling relationships. Preliminary analysis shows trends in the spatial characteristics of barrier islands. There is a strong linear relationship between the perimeter and length (y= -0.59 + 0.42x, R2=0.95). Linear trends also relate length to area when the data are separated by tidal range to wave height ratio. Assessment of barrier island shape supports the hypothesis of Hayes (1979) that barrier islands in wave-dominated settings are long and linear while those in mixed energy setting are more rounded. The barrier islands of the Texas Gulf of Mexico are larger than the global average for the database, with distinctly longer length values (41.16 km vs. 15.77 km respectively) and larger areas (103.81 km2 vs. 42.14 km2 respectively). Initial assessment shows that tidal range and wave height are primary controls barrier island dimensions. Future work will consider climate, latitude, fluvial input, and tectonic regime as additional factors. Assessing modern barrier islands will lend insight into potential paleomorphodynamic relationships and help determine how islands are transferred into the rock record, with implications for sequence stratigraphy, subsurface reservoirs, etc.

Mesoscale phase distribution in single particles of LiFePO4 following lithium deintercalation

PubMed Central

Boesenberg, Ulrike; Meirer, Florian; Liu, Yijin; Shukla, Alpesh K.; Dell’Anna, Rossana; Tyliszczak, Tolek; Chen, Guoying; Andrews, Joy C.; Richardson, Thomas J.; Kostecki, Robert; Cabana, Jordi

2013-01-01

The chemical phase distribution in hydrothermally grown micrometric single crystals LiFePO4 following partial chemical delithiation was investigated. Full field and scanning X-ray microscopy were combined with X-ray absorption spectroscopy at the Fe K- and O K-edges, respectively, to produce maps with high chemical and spatial resolution. The resulting information was compared to morphological insight into the mechanics of the transformation by scanning transmission electron microscopy. This study revealed the interplay at the mesocale between microstructure and phase distribution during the redox process, as morphological defects were found to kinetically determine the progress of the reaction. Lithium deintercalation was also found to induce severe mechanical damage in the crystals, presumably due to the lattice mismatch between LiFePO4 and FePO4. Our results lead to the conclusion that rational design of intercalation-based electrode materials, such as LiFePO4, with optimized utilization and life requires the tailoring of particles that minimize kinetic barriers and mechanical strain. Coupling TXM-XANES with TEM can provide unique insight into the behavior of electrode materials during operation, at scales spanning from nanoparticles to ensembles and complex architectures. PMID:23745016

Coupled economic-coastline modeling with suckers and free riders

NASA Astrophysics Data System (ADS)

Williams, Zachary C.; McNamara, Dylan E.; Smith, Martin D.; Murray, A. Brad.; Gopalakrishnan, Sathya

2013-06-01

erosion is a natural trend along most sandy coastlines. Humans often respond to shoreline erosion with beach nourishment to maintain coastal property values. Locally extending the shoreline through nourishment alters alongshore sediment transport and changes shoreline dynamics in adjacent coastal regions. If left unmanaged, sandy coastlines can have spatially complex or simple patterns of erosion due to the relationship of large-scale morphology and the local wave climate. Using a numerical model that simulates spatially decentralized and locally optimal nourishment decisions characteristic of much of U.S. East Coast beach management, we find that human erosion intervention does not simply reflect the alongshore erosion pattern. Spatial interactions generate feedbacks in economic and physical variables that lead to widespread emergence of "free riders" and "suckers" with subsequent inequality in the alongshore distribution of property value. Along cuspate coastlines, such as those found along the U.S. Southeast Coast, these long-term property value differences span an order of magnitude. Results imply that spatially decentralized management of nourishment can lead to property values that are divorced from spatial erosion signals; this management approach is unlikely to be optimal.

Scaling relations for watersheds

NASA Astrophysics Data System (ADS)

Fehr, E.; Kadau, D.; Araújo, N. A. M.; Andrade, J. S., Jr.; Herrmann, H. J.

2011-09-01

We study the morphology of watersheds in two and three dimensional systems subjected to different degrees of spatial correlations. The response of these objects to small, local perturbations is also investigated with extensive numerical simulations. We find the fractal dimension of the watersheds to generally decrease with the Hurst exponent, which quantifies the degree of spatial correlations. Moreover, in two dimensions, our results match the range of fractal dimensions 1.10≤df≤1.15 observed for natural landscapes. We report that the watershed is strongly affected by local perturbations. For perturbed two and three dimensional systems, we observe a power-law scaling behavior for the distribution of areas (volumes) enclosed by the original and the displaced watershed and for the distribution of distances between outlets. Finite-size effects are analyzed and the resulting scaling exponents are shown to depend significantly on the Hurst exponent. The intrinsic relation between watershed and invasion percolation, as well as relations between exponents conjectured in previous studies with two dimensional systems, are now confirmed by our results in three dimensions.

Unpacking boxes: Integration of molecular, morphological and ecological approaches reveals extensive patterns of reticulate evolution in box eucalypts.

PubMed

Flores-Rentería, Lluvia; Rymer, Paul D; Riegler, Markus

2017-03-01

Reticulate evolution by hybridization is considered a common process shaping the evolution of many plant species, however, reticulation could also be due to incomplete lineage sorting in biodiverse systems. For our study we selected a group of closely related plant taxa with contrasting yet partially overlapping geographic distributions and different population sizes, to distinguish between reticulated patterns due to hybridization and incomplete lineage sorting. We predicted that sympatric or proximal populations of different species are more likely to have gene flow than geographically distant populations of the same widespread species. Furthermore, for species with restricted distributions, and therefore, small effective population sizes, we predicted complete lineage sorting. Eastern grey box eucalypt species (Eucalyptus supraspecies Moluccanae) provide an ideal system to explore patterns of reticulate evolution. They form a diverse, recently evolved and phylogenetically undefined group within Eucalyptus, with overlapping morphological features and hybridization in nature. We used a multi-faceted approach, combining analyses of chloroplast and nuclear DNA, as well as seedling morphology, flowering time and ecological spatial differentiation in order to test for species delimitation and reticulate evolution in this group. The multiple layers of results were consistent and suggested a lack of monophyly at different hierarchical levels due to multidirectional gene flow among several species, challenging species delimitation. Chloroplast and nuclear haplotypes were shared among different species in geographic proximity, consistent with hybridization zones. Furthermore, species with restricted distributions appeared better resolved due to lineage sorting in the absence of hybridization. We conclude that a combination of molecular, morphological and ecological approaches is required to disentangle patterns of reticulate evolution in the box eucalypts. Published by Elsevier Inc.

Positron Emission Tomography for Pre-Clinical Sub-Volume Dose Escalation

NASA Astrophysics Data System (ADS)

Bass, Christopher Paul

Purpose: This dissertation focuses on establishment of pre-clinical methods facilitating the use of PET imaging for selective sub-volume dose escalation. Specifically the problems addressed are 1.) The difficulties associated with comparing multiple PET images, 2.) The need for further validation of novel PET tracers before their implementation in dose escalation schema and 3.) The lack of concrete pre-clinical data supporting the use of PET images for guidance of selective sub-volume dose escalations. Methods and materials: In order to compare multiple PET images the confounding effects of mispositioning and anatomical change between imaging sessions needed to be alleviated. To mitigate the effects of these sources of error, deformable image registration was employed. A deformable registration algorithm was selected and the registration error was evaluated via the introduction of external fiducials to the tumor. Once a method for image registration was established, a procedure for validating the use of novel PET tracers with FDG was developed. Nude mice were used to perform in-vivo comparisons of the spatial distributions of two PET tracers, FDG and FLT. The spatial distributions were also compared across two separate tumor lines to determine the effects of tumor morphology on spatial distribution. Finally, the research establishes a method for acquiring pre-clinical data supporting the use of PET for image-guidance in selective dose escalation. Nude mice were imaged using only FDG PET/CT and the resulting images were used to plan PET-guided dose escalations to a 5 mm sub-volume within the tumor that contained the highest PET tracer uptake. These plans were then delivered using the Small Animal Radiation Research Platform (SARRP) and the efficacy of the PET-guided plans was observed. Results and Conclusions: The analysis of deformable registration algorithms revealed that the BRAINSFit B-spline deformable registration algorithm available in SLICER3D was capable of registering small animal PET/CT data sets in less than 5 minutes with an average registration error of .3 mm. The methods used in chapter 3 allowed for the comparison of the spatial distributions of multiple PET tracers imaged at different times. A comparison of FDG and FLT showed that both are positively correlated but that tumor morphology does significantly affect the correlation between the two tracers. An overlap analysis of the high intensity PET regions of FDG and FLT showed that FLT offers additional spatial information to that seen with FDG. In chapter 4 the SARRP allowed for the delivery of planned PET-guided selective dose escalations to a pre-clinical tumor model. This will facilitate future research validating the use of PET for clinical selective dose escalation.

Advances in Spectral-Spatial Classification of Hyperspectral Images

NASA Technical Reports Server (NTRS)

Fauvel, Mathieu; Tarabalka, Yuliya; Benediktsson, Jon Atli; Chanussot, Jocelyn; Tilton, James C.

2012-01-01

Recent advances in spectral-spatial classification of hyperspectral images are presented in this paper. Several techniques are investigated for combining both spatial and spectral information. Spatial information is extracted at the object (set of pixels) level rather than at the conventional pixel level. Mathematical morphology is first used to derive the morphological profile of the image, which includes characteristics about the size, orientation and contrast of the spatial structures present in the image. Then the morphological neighborhood is defined and used to derive additional features for classification. Classification is performed with support vector machines using the available spectral information and the extracted spatial information. Spatial post-processing is next investigated to build more homogeneous and spatially consistent thematic maps. To that end, three presegmentation techniques are applied to define regions that are used to regularize the preliminary pixel-wise thematic map. Finally, a multiple classifier system is defined to produce relevant markers that are exploited to segment the hyperspectral image with the minimum spanning forest algorithm. Experimental results conducted on three real hyperspectral images with different spatial and spectral resolutions and corresponding to various contexts are presented. They highlight the importance of spectral-spatial strategies for the accurate classification of hyperspectral images and validate the proposed methods.

Ancient sedimentary structures in the <3.7 Ga Gillespie Lake Member, Mars, that resemble macroscopic morphology, spatial associations, and temporal succession in terrestrial microbialites.

PubMed

Noffke, Nora

2015-02-01

Sandstone beds of the <3.7 Ga Gillespie Lake Member on Mars have been interpreted as evidence of an ancient playa lake environment. On Earth, such environments have been sites of colonization by microbial mats from the early Archean to the present time. Terrestrial microbial mats in playa lake environments form microbialites known as microbially induced sedimentary structures (MISS). On Mars, three lithofacies of the Gillespie Lake Member sandstone display centimeter- to meter-scale structures similar in macroscopic morphology to terrestrial MISS that include "erosional remnants and pockets," "mat chips," "roll-ups," "desiccation cracks," and "gas domes." The microbially induced sedimentary-like structures identified in Curiosity rover mission images do not have a random distribution. Rather, they were found to be arranged in spatial associations and temporal successions that indicate they changed over time. On Earth, if such MISS occurred with this type of spatial association and temporal succession, they would be interpreted as having recorded the growth of a microbially dominated ecosystem that thrived in pools that later dried completely: erosional pockets, mat chips, and roll-ups resulted from water eroding an ancient microbial mat-covered sedimentary surface; during the course of subsequent water recess, channels would have cut deep into the microbial mats, leaving erosional remnants behind; desiccation cracks and gas domes would have occurred during a final period of subaerial exposure of the microbial mats. In this paper, the similarities of the macroscopic morphologies, spatial associations, and temporal succession of sedimentary structures on Mars to MISS preserved on Earth has led to the following hypothesis: The sedimentary structures in the <3.7 Ga Gillespie Lake Member on Mars are ancient MISS produced by interactions between microbial mats and their environment. Proposed here is a strategy for detecting, identifying, confirming, and differentiating possible MISS during current and future Mars missions.

Spatial Genetic Structure of the Abundant and Widespread Peatmoss Sphagnum magellanicum Brid.

PubMed Central

Kyrkjeeide, Magni Olsen; Hassel, Kristian; Flatberg, Kjell Ivar; Shaw, A. Jonathan; Yousefi, Narjes; Stenøien, Hans K.

2016-01-01

Spore-producing organisms have small dispersal units enabling them to become widespread across continents. However, barriers to gene flow and cryptic speciation may exist. The common, haploid peatmoss Sphagnum magellanicum occurs in both the Northern and Southern hemisphere, and is commonly used as a model in studies of peatland ecology and peatmoss physiology. Even though it will likely act as a rich source in functional genomics studies in years to come, surprisingly little is known about levels of genetic variability and structuring in this species. Here, we assess for the first time how genetic variation in S. magellanicum is spatially structured across its full distribution range (Northern Hemisphere and South America). The morphologically similar species S. alaskense was included for comparison. In total, 195 plants were genotyped at 15 microsatellite loci. Sequences from two plastid loci (trnG and trnL) were obtained from 30 samples. Our results show that S. alaskense and almost all plants of S. magellanicum in the northern Pacific area are diploids and share the same gene pool. Haploid plants occur in South America, Europe, eastern North America, western North America, and southern Asia, and five genetically differentiated groups with different distribution ranges were found. Our results indicate that S. magellanicum consists of several distinct genetic groups, seemingly with little or no gene flow among them. Noteworthy, the geographical separation of diploids and haploids is strikingly similar to patterns found within other haploid Sphagnum species spanning the Northern Hemisphere. Our results confirm a genetic division between the Beringian and the Atlantic that seems to be a general pattern in Sphagnum taxa. The pattern of strong genetic population structuring throughout the distribution range of morphologically similar plants need to be considered in future functional genomic studies of S. magellanicum. PMID:26859563

Spatial Genetic Structure of the Abundant and Widespread Peatmoss Sphagnum magellanicum Brid.

PubMed

Kyrkjeeide, Magni Olsen; Hassel, Kristian; Flatberg, Kjell Ivar; Shaw, A Jonathan; Yousefi, Narjes; Stenøien, Hans K

2016-01-01

Spore-producing organisms have small dispersal units enabling them to become widespread across continents. However, barriers to gene flow and cryptic speciation may exist. The common, haploid peatmoss Sphagnum magellanicum occurs in both the Northern and Southern hemisphere, and is commonly used as a model in studies of peatland ecology and peatmoss physiology. Even though it will likely act as a rich source in functional genomics studies in years to come, surprisingly little is known about levels of genetic variability and structuring in this species. Here, we assess for the first time how genetic variation in S. magellanicum is spatially structured across its full distribution range (Northern Hemisphere and South America). The morphologically similar species S. alaskense was included for comparison. In total, 195 plants were genotyped at 15 microsatellite loci. Sequences from two plastid loci (trnG and trnL) were obtained from 30 samples. Our results show that S. alaskense and almost all plants of S. magellanicum in the northern Pacific area are diploids and share the same gene pool. Haploid plants occur in South America, Europe, eastern North America, western North America, and southern Asia, and five genetically differentiated groups with different distribution ranges were found. Our results indicate that S. magellanicum consists of several distinct genetic groups, seemingly with little or no gene flow among them. Noteworthy, the geographical separation of diploids and haploids is strikingly similar to patterns found within other haploid Sphagnum species spanning the Northern Hemisphere. Our results confirm a genetic division between the Beringian and the Atlantic that seems to be a general pattern in Sphagnum taxa. The pattern of strong genetic population structuring throughout the distribution range of morphologically similar plants need to be considered in future functional genomic studies of S. magellanicum.

COMPACT GALACTIC PLANETARY NEBULAE: AN HST /WFC3 MORPHOLOGICAL CATALOG, AND A STUDY OF THEIR ROLE IN THE GALAXY

DOE Office of Scientific and Technical Information (OSTI.GOV)

Stanghellini, Letizia; Shaw, Richard A.; Villaver, Eva

We present the images of a Hubble Space Telescope ( HST /WFC3) snapshot program of angularly compact Galactic planetary nebulae (PNe), acquired with the aim of studying their size, evolutionary status, and morphology. PNe that are smaller than ∼4″ are underrepresented in most morphological studies, and today they are less well studied than their immediate evolutionary predecessors, the pre-planetary nebulae. The images have been acquired in the light of [O iii] λ 5007, which is commonly used to classify the PN morphology, in the UV continuum with the aim of detecting the central star unambiguously, and in the I -bandmore » to detect a cool stellar companion, if present. The sample of 51 confirmed PNe exhibits nearly the full range of primary morphological classes, with the distribution more heavily weighted toward bipolar PNe, but with the total of aspherical PNe almost identical to that of the general Galactic sample. A large range of microstructures is evident in our sample as well, with many nebulae displaying attached shells, halos, ansae, and internal structure in the form of arcs, rings, and spirals. Various aspherical structures in a few PNe, including detached arcs, suggest an interaction with the ISM. We studied the observed sample of compact Galactic PNe in the context of the general Galactic PN population, and explore whether their physical size, spatial distribution, reddening, radial metallicity gradient, and possible progenitors are peculiar within the population of Galactic PNe. We found that these compact Galactic PNe, which have been selected based on apparent dimensions, constitute a diverse Galactic PN population that is relatively uniformly distributed across the Galactic disk, including the outskirts of our Galaxy. This unique sample will be used in the future to probe the old Galactic disk population.« less

Airborne spectrophotometry of Eta Carinae from 4.5 to 7.5 microns and a model for source morphology

NASA Technical Reports Server (NTRS)

Russell, Ray W.; Lynch, David K.; Hackwell, John A.; Rudy, Richard J.; Rossano, George S.; Castelaz, M. W.

1987-01-01

Spectrophotometric observations of Eta Car between 4.5 and 7.5 microns show a featureless thermal-like spectrum with no fine-structure lines or broad emission or absorption features. The color temperature of the spectrum is approximately 375 K. High spatial resolution maps at 3.5, 4.8, and 10 microns obtained from the ground are used to discuss the dust distribution and temperature structure, and to present a model for general source morphology. The upper limit to the brightness of the forbidden Ar II fine-structure emission line at 6.98 microns is less than 7 x 10 to the -16th W/sq cm, which still allows for a significant overabundance of argon and is consistent with the evolved nature of the source.

Phylogeographic analysis reveals high genetic structure with uniform phenotypes in the paper wasp Protonectarina sylveirae (Hymenoptera: Vespidae).

PubMed

da Silva, Marjorie; Noll, Fernando Barbosa; E Castro, Adriana C Morales-Corrêa

2018-01-01

Swarm-founding wasps are endemic and common representatives of neotropical fauna and compose an interesting social tribe of vespids, presenting both complex social characteristics and uncommon traits for a eusocial group, such as the absence of castes with distinct morphology. The paper wasp Protonectarina sylveirae (Saussure) presents a broad distribution from Brazil, Argentina and Paraguay, occurring widespread in the Atlantic rainforest and arboreal Caatinga, being absent in the Amazon region. Given the peculiar distribution among swarm-founding wasps, an integrative approach to reconstruct the evolutionary history of P. sylveirae in a spatial-temporal framework was performed to investigate: the presence of genetic structure and its relationship with the geography, the evolution of distinct morphologic lineages and the possible historical event(s) in Neotropical region, which could explain the observed phylogeographic pattern. Individuals of P. sylveirae were obtained from populations of 16 areas throughout its distribution for DNA extraction and amplification of mitochondrial genes 12S, 16S and COI. Analysis of genetic diversity, construction of haplotype net, analysis of population structure and dating analysis of divergence time were performed. A morphometric analysis was also performed using 8 measures of the body of the adult (workers) to test if there are morphological distinction among populations. Thirty-five haplotypes were identified, most of them exclusively of a group and a high population structure was found. The possibility of genetic divergence because of isolation by distance was rejected. Morphological analysis pointed to a great uniformity in phenotypes, with only a small degree of differentiation between populations of south and the remaining. Divergence time analysis showed a Middle/Late Miocene origin, a period where an extensive marine ingression occurred in South America. Divergence of haplogroups began from the Plio/Pleistocene boundary and the last glacial maximum most likely modeled the current distribution of species, even though it was not the cause of genetic breaks.

Phylogeographic analysis reveals high genetic structure with uniform phenotypes in the paper wasp Protonectarina sylveirae (Hymenoptera: Vespidae)

PubMed Central

2018-01-01

Swarm-founding wasps are endemic and common representatives of neotropical fauna and compose an interesting social tribe of vespids, presenting both complex social characteristics and uncommon traits for a eusocial group, such as the absence of castes with distinct morphology. The paper wasp Protonectarina sylveirae (Saussure) presents a broad distribution from Brazil, Argentina and Paraguay, occurring widespread in the Atlantic rainforest and arboreal Caatinga, being absent in the Amazon region. Given the peculiar distribution among swarm-founding wasps, an integrative approach to reconstruct the evolutionary history of P. sylveirae in a spatial-temporal framework was performed to investigate: the presence of genetic structure and its relationship with the geography, the evolution of distinct morphologic lineages and the possible historical event(s) in Neotropical region, which could explain the observed phylogeographic pattern. Individuals of P. sylveirae were obtained from populations of 16 areas throughout its distribution for DNA extraction and amplification of mitochondrial genes 12S, 16S and COI. Analysis of genetic diversity, construction of haplotype net, analysis of population structure and dating analysis of divergence time were performed. A morphometric analysis was also performed using 8 measures of the body of the adult (workers) to test if there are morphological distinction among populations. Thirty-five haplotypes were identified, most of them exclusively of a group and a high population structure was found. The possibility of genetic divergence because of isolation by distance was rejected. Morphological analysis pointed to a great uniformity in phenotypes, with only a small degree of differentiation between populations of south and the remaining. Divergence time analysis showed a Middle/Late Miocene origin, a period where an extensive marine ingression occurred in South America. Divergence of haplogroups began from the Plio/Pleistocene boundary and the last glacial maximum most likely modeled the current distribution of species, even though it was not the cause of genetic breaks. PMID:29538451

Fragility of foot process morphology in kidney podocytes arises from chaotic spatial propagation of cytoskeletal instability

PubMed Central

Deerinck, Thomas J.; Chen, Yibang; He, John C.; Ellisman, Mark H.; Iyengar, Ravi

2017-01-01

Kidney podocytes’ function depends on fingerlike projections (foot processes) that interdigitate with those from neighboring cells to form the glomerular filtration barrier. The integrity of the barrier depends on spatial control of dynamics of actin cytoskeleton in the foot processes. We determined how imbalances in regulation of actin cytoskeletal dynamics could result in pathological morphology. We obtained 3-D electron microscopy images of podocytes and used quantitative features to build dynamical models to investigate how regulation of actin dynamics within foot processes controls local morphology. We find that imbalances in regulation of actin bundling lead to chaotic spatial patterns that could impair the foot process morphology. Simulation results are consistent with experimental observations for cytoskeletal reconfiguration through dysregulated RhoA or Rac1, and they predict compensatory mechanisms for biochemical stability. We conclude that podocyte morphology, optimized for filtration, is intrinsically fragile, whereby local transient biochemical imbalances may lead to permanent morphological changes associated with pathophysiology. PMID:28301477

Linking the kinematics of the interplate and the offshore morphology along the Chilean subduction margin

NASA Astrophysics Data System (ADS)

Urrutia, Isabel; Moreno, Marcos; Oncken, Onno

2016-04-01

Morphological features at subduction zones are undoubtedly influenced by the complex interplay between the subducting slab and the overriding plate. Several studies suggest that the subduction dynamics is strongly dependent on the geometry and rheology of the margin (including gravity/density anomalies, viscous mantle flow and roughness of the slab, among others). However, it is not clear how the geomorphological variation of the forearc along strike can be used as a proxy for better understanding the mechanics on the interface and seismotectonic segmentation. Here we investigate the links between the kinematics of the plate interface and the morphology of the overriding plate along the Chilean margin by combining morphometrical and statistical analysis. We constructed swath profiles subtracting the averaged topography and performed gradient analysis to characterize variations of morphological features, and we compared these results with the locking degree distribution derived from the inversion of GPS data. On the coastal area the bathymetry and topography analysis shows a planar feature, gently dipping ocean-wards and backed by a cliff, which exhibits spatial variations in its width, height and extension along-strike. This morphology suggests a quiescence process or a "stable tectonic condition", at least since the late Quaternary (over multiple seismic cycles). The results indicate that this planar feature spatially correlates with the rupture size of recent great earthquakes and locking degree areas, suggesting that earthquake cycle deformation has an imprint on the offshore morphology, which can be used to study the transfer of stresses among adjacent seismotectonic segments and the periodicity and location of large earthquakes. In addition, the longevity of this correlation between topography, earthquake rupture and geodetic locking that likely integrates over a time window of several 103 to several 105 years indicates that the instrumentally inferred locking has a long term memory across multiple seismic cycles.

NuSTAR Study of Hard X-ray Morphology and Spectroscopy G21.5-0.9

NASA Technical Reports Server (NTRS)

Nynka, Melania; Hailey, Charles J.; Reynolds, Stephen P.; An, Hongjun; Baganoff, Frederick K.; Boggs, Steven E.; Christensen, Finn E.; Craig, William W.; Gotthelf, Eric V.; Grefenstette, Brian W.;

Hyperspectral, photogrammetric and morphological characterization of surface impurities over the Greenland ice sheet from remote sensing observations

NASA Astrophysics Data System (ADS)

Tedesco, M.; Alexander, P. M.; Briggs, K.; Linares, M.; Mote, T. L.

2016-12-01

The spatial and temporal evolution of surface impurities over the Greenland ice sheet plays a crucial role in modulating the meltwater production in view of the associated feedback on albedo. Recent studies have pointed to a `darkening' of the west portion of the ice sheet with this reduction in albedo likely associated with the increasing presence of surface impurities (e.g., soot, dust) and biological activity (e.g., cryoconite holes, algae, bacteria). Regional climate models currently do not account for the presence, evolution and impact on albedo of such impurities, mostly because the underlying processes driving the spectral and morphological evolution of impurities are poorly known. One for the reasons for this is the lack of hyperspectral and high-spatial resolution data over specific regions of the Greenland ice sheet. To put things in perspective: there is more hyperspectral data at high spatial resolution for the planet Mars than for the Greenland ice sheet. In this presentation, we report the results of an analysis using the few available hyperspectral data collected over Greenland by the HYPERION and AVIRIS sensors, in conjunction with visible (RGB) helicopter-based high resolution images and LANDSAT/WorldView data for characterizing the spectral and morphological evolution of surface impurities and cryoconite holes over western Greenland. The hyperspectral data is used to characterize the abundance of different `endmembers' and the temporal evolution (inter-seasonal and intra-seasonal) of surface impurities composition and concentration. Digital photographs from helicopter are used to characterize the size and distribution of cryoconite holes as a function of elevation and, lastly, LANDSAT/WV images are used to study the evolution of `mysterious' shapes that form as a consequence of the accumulation of impurities and the ice flow.

HIGH-REDSHIFT DUST OBSCURED GALAXIES: A MORPHOLOGY-SPECTRAL ENERGY DISTRIBUTION CONNECTION REVEALED BY KECK ADAPTIVE OPTICS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Melbourne, J.; Matthews, K.; Soifer, B. T.

A simple optical to mid-IR color selection, R - [24]>14, i.e., f {sub {nu}}(24 {mu}m)/f {sub {nu}}(R) {approx}> 1000, identifies highly dust obscured galaxies (DOGs) with typical redshifts of z {approx} 2 {+-} 0.5. Extreme mid-IR luminosities (L {sub IR} > 10{sup 12-14}) suggest that DOGs are powered by a combination of active galactic nuclei (AGNs) and star formation, possibly driven by mergers. In an effort to compare their photometric properties with their rest-frame optical morphologies, we obtained high-spatial resolution (0.''05-0.''1) Keck Adaptive Optics K'-band images of 15 DOGs. The images reveal a wide range of morphologies, including small exponentialmore » disks (eight of 15), small ellipticals (four of 15), and unresolved sources (two of 15). One particularly diffuse source could not be classified because of low signal-to-noise ratio. We find a statistically significant correlation between galaxy concentration and mid-IR luminosity, with the most luminous DOGs exhibiting higher concentration and smaller physical size. DOGs with high concentration also tend to have spectral energy distributions (SEDs) suggestive of AGN activity. Thus, central AGN light may be biasing the morphologies of the more luminous DOGs to higher concentration. Conversely, more diffuse DOGs tend to show an SED shape suggestive of star formation. Two of 15 in the sample show multiple resolved components with separations of {approx}1 kpc, circumstantial evidence for ongoing mergers.« less

Theoretical foundations of spatially-variant mathematical morphology part ii: gray-level images.

PubMed

Bouaynaya, Nidhal; Schonfeld, Dan

2008-05-01

In this paper, we develop a spatially-variant (SV) mathematical morphology theory for gray-level signals and images in the Euclidean space. The proposed theory preserves the geometrical concept of the structuring function, which provides the foundation of classical morphology and is essential in signal and image processing applications. We define the basic SV gray-level morphological operators (i.e., SV gray-level erosion, dilation, opening, and closing) and investigate their properties. We demonstrate the ubiquity of SV gray-level morphological systems by deriving a kernel representation for a large class of systems, called V-systems, in terms of the basic SV graylevel morphological operators. A V-system is defined to be a gray-level operator, which is invariant under gray-level (vertical) translations. Particular attention is focused on the class of SV flat gray-level operators. The kernel representation for increasing V-systems is a generalization of Maragos' kernel representation for increasing and translation-invariant function-processing systems. A representation of V-systems in terms of their kernel elements is established for increasing and upper-semi-continuous V-systems. This representation unifies a large class of spatially-variant linear and non-linear systems under the same mathematical framework. Finally, simulation results show the potential power of the general theory of gray-level spatially-variant mathematical morphology in several image analysis and computer vision applications.

Fault zone structure from topography: signatures of en echelon fault slip at Mustang Ridge on the San Andreas Fault, Monterey County, California

USGS Publications Warehouse

DeLong, Stephen B.; Hilley, George E.; Rymer, Michael J.; Prentice, Carol

2010-01-01

We used high-resolution topography to quantify the spatial distribution of scarps, linear valleys, topographic sinks, and oversteepened stream channels formed along an extensional step over on the San Andreas Fault (SAF) at Mustang Ridge, California. This location provides detail of both creeping fault landform development and complex fault zone kinematics. Here, the SAF creeps 10–14 mm/yr slower than at locations ∼20 km along the fault in either direction. This spatial change in creep rate is coincident with a series of en echelon oblique-normal faults that strike obliquely to the SAF and may accommodate the missing deformation. This study presents a suite of analyses that are helpful for proper mapping of faults in locations where high-resolution topographic data are available. Furthermore, our analyses indicate that two large subsidiary faults near the center of the step over zone appear to carry significant distributed deformation based on their large apparent vertical offsets, the presence of associated sag ponds and fluvial knickpoints, and the observation that they are rotating a segment of the main SAF. Several subsidiary faults in the southeastern portion of Mustang Ridge are likely less active; they have few associated sag ponds and have older scarp morphologic ages and subdued channel knickpoints. Several faults in the northwestern part of Mustang Ridge, though relatively small, are likely also actively accommodating active fault slip based on their young morphologic ages and the presence of associated sag ponds.

Comparative phylogeography in the Atlantic forest and Brazilian savannas: pleistocene fluctuations and dispersal shape spatial patterns in two bumblebees.

PubMed

Françoso, Elaine; Zuntini, Alexandre Rizzo; Carnaval, Ana Carolina; Arias, Maria Cristina

2016-12-07

Bombus morio and B. pauloensis are sympatric widespread bumblebee species that occupy two major Brazilian biomes, the Atlantic forest and the savannas of the Cerrado. Differences in dispersion capacity, which is greater in B. morio, likely influence their phylogeographic patterns. This study asks which processes best explain the patterns of genetic variation observed in B. morio and B. pauloensis, shedding light on the phenomena that shaped the range of local populations and the spatial distribution of intra-specific lineages. Results suggest that Pleistocene climatic oscillations directly influenced the population structure of both species. Correlative species distribution models predict that the warmer conditions of the Last Interglacial contributed to population contraction, while demographic expansion happened during the Last Glacial Maximum. These results are consistent with physiological data suggesting that bumblebees are well adapted to colder conditions. Intra-specific mitochondrial genealogies are not congruent between the two species, which may be explained by their documented differences in dispersal ability. While populations of the high-dispersal B. morio are morphologically and genetically homogeneous across the species range, B. pauloensis encompasses multiple (three) mitochondrial lineages, and show clear genetic, geographic, and morphological differences. Because the lineages of B. pauloensis are currently exposed to distinct climatic conditions (and elevations), parapatric diversification may occur within this taxon. The eastern portion of the state of São Paulo, the most urbanized area in Brazil, represents the center of genetic diversity for B. pauloensis.

Intimal cushions and endothelial nuclear elongation around mouse aortic branches and their spatial correspondence with patterns of lipid deposition

PubMed Central

Bond, Andrew R.; Ni, Chih-Wen; Jo, Hanjoong

2010-01-01

Spatial variation in hemodynamic stresses acting on the arterial wall may explain the nonuniform distribution of atherosclerosis. In thoracic aortas of LDL receptor/apolipoprotein E double knockout mice, lesions develop preferentially around the entire circumference of intercostal branch ostia, regardless of age, with the highest prevalence occurring upstream. Additional chevron-shaped lesions occur further upstream of the ostia. This pattern differs from the age-related ones occurring in people and rabbits. In the present study, patterns of near-wall blood flow around intercostal ostia in wild-type mice were estimated from the morphology of endothelial nuclei, which were shown in vitro to elongate in response to elevated shear stress and to align with the flow, and wall structure was assessed from confocal and scanning electron microscopy. A triangular intimal cushion surrounded the upstream part of most ostia. Nuclear length-to-width ratios were lowest over this cushion and highest at the sides of branches, regardless of age. Nuclear orientations were consistent with flow diverging around the branch. The pattern of nuclear morphology differed from the age-related ones observed in rabbits. The intimal cushion and the distribution of shear stress inferred from these observations can partly account for the pattern of lesions observed in knockout mice. Nuclear elongation in nonbranch regions was approximately constant across animals of different size, demonstrating the existence of a mechanism by which endothelial cells compensate for the dependence of mean aortic wall shear stress on body mass. PMID:19933414

Mapping the spatial distribution of star formation in cluster galaxies at z ~ 0.5 with the Grism Lens-Amplified Survey from Space (GLASS)

NASA Astrophysics Data System (ADS)

Vulcani, Benedetta; Vulcani

We present the first study of the spatial distribution of star formation in z ~ 0.5 cluster galaxies. The analysis is based on data taken with the Wide Field Camera 3 as part of the Grism Lens-Amplified Survey from Space (GLASS). We illustrate the methodology by focusing on two clusters (MACS0717.5+3745 and MACS1423.8+2404) with different morphologies (one relaxed and one merging) and use foreground and background galaxies as field control sample. The cluster+field sample consists of 42 galaxies with stellar masses in the range 108-1011 M ⊙, and star formation rates in the range 1-20 M⊙ yr -1. In both environments, Hα is more extended than the rest-frame UV continuum in 60% of the cases, consistent with diffuse star formation and inside out growth. The Hα emission appears more extended in cluster galaxies than in the field, pointing perhaps to ionized gas being stripped and/or star formation being enhanced at large radii. The peak of the Hα emission and that of the continuum are offset by less than 1 kpc. We investigate trends with the hot gas density as traced by the X-ray emission, and with the surface mass density as inferred from gravitational lens models and find no conclusive results. The diversity of morphologies and sizes observed in Hα illustrates the complexity of the environmental process that regulate star formation.

Dendritic trafficking faces physiologically critical speed-precision tradeoffs

PubMed Central

Williams, Alex H; O'Donnell, Cian; Sejnowski, Terrence J; O'Leary, Timothy

2016-01-01

Nervous system function requires intracellular transport of channels, receptors, mRNAs, and other cargo throughout complex neuronal morphologies. Local signals such as synaptic input can regulate cargo trafficking, motivating the leading conceptual model of neuron-wide transport, sometimes called the ‘sushi-belt model’ (Doyle and Kiebler, 2011). Current theories and experiments are based on this model, yet its predictions are not rigorously understood. We formalized the sushi belt model mathematically, and show that it can achieve arbitrarily complex spatial distributions of cargo in reconstructed morphologies. However, the model also predicts an unavoidable, morphology dependent tradeoff between speed, precision and metabolic efficiency of cargo transport. With experimental estimates of trafficking kinetics, the model predicts delays of many hours or days for modestly accurate and efficient cargo delivery throughout a dendritic tree. These findings challenge current understanding of the efficacy of nucleus-to-synapse trafficking and may explain the prevalence of local biosynthesis in neurons. DOI: http://dx.doi.org/10.7554/eLife.20556.001 PMID:28034367

Modelling the Influence of Long-Term Hydraulic Conditions on Juvenile Salmon Habitats in AN Upland Scotish River

NASA Astrophysics Data System (ADS)

Fabris, L.; Malcolm, I.; Millidine, K. J.; Buddendorf, B.; Tetzlaff, D.; Soulsby, C.

2015-12-01

Wild Atlantic salmon populations in Scottish rivers constitute an important economic and recreational resource, as well as being a key component of biodiversity. Salmon have very specific habitat requirements at different life stages and their distribution is therefore strongly influenced by a complex suite of biological and physical controls. Previous research has shown that stream hydrodynamics and channel morphology have a strong influence on the distribution and density of juvenile salmon. Here, we utilise a unique 20 year data set of spatially distributed juvenile salmon densities derived from annual electro-fishing surveys in an upland Scottish river. We examine to what extent the spatial and temporal variability of in-stream hydraulics regulates the spatial and temporal variability in the performance and density of juvenile salmon. A 2-D hydraulic model (River2D) is used to simulate water velocity and water depth under different flow conditions for seven different electro-fishing sites. The selected sites represent different hydromorphological environments including plane-bed, step-pool and pool riffle reaches. The bathymetry of each site was characterised using a total station providing an accurate DTM of the bed, and hydraulic simulations were driven by 20 year stream flow records. Habitat suitability curves, based on direct observations during electro-fishing surveys, were produced for a range of hydraulic indices for juvenile salmon. The hydraulic simulations showed marked spatial differences in juvenile habitat quality both within and between reaches. They also showed marked differences both within and between years. This is most evident in extreme years with wet summers when salmon feeding opportunities may be constrained. Integration of hydraulic habitat models, with fish preference curves and the long term hydrological data allows us to assess whether long-term changes in hydroclimate may be affecting juvenile salmonid populations in the study stream.Wild Atlantic salmon populations in Scottish rivers constitute an important economic and recreational resource, as well as being a key component of biodiversity. Salmon have very specific habitat requirements at different life stages and their distribution is therefore strongly influenced by a complex suite of biological and physical controls. Previous research has shown that stream hydrodynamics and channel morphology have a strong influence on the distribution and density of juvenile salmon. Here, we utilise a unique 20 year data set of spatially distributed juvenile salmon densities derived from annual electro-fishing surveys in an upland Scottish river. We examine to what extent the spatial and temporal variability of in-stream hydraulics regulates the spatial and temporal variability in the performance and density of juvenile salmon. A 2-D hydraulic model (River2D) is used to simulate water velocity and water depth under different flow conditions for seven different electro-fishing sites. The selected sites represent different hydromorphological environments including plane-bed, step-pool and pool riffle reaches. The bathymetry of each site was characterised using a total station providing an accurate DTM of the bed, and hydraulic simulations were driven by 20 year stream flow records. Habitat suitability curves, based on direct observations during electro-fishing surveys, were produced for a range of hydraulic indices for juvenile salmon. The hydraulic simulations showed marked spatial differences in juvenile habitat quality both within and between reaches. They also showed marked differences both within and between years. This is most evident in extreme years with wet summers when salmon feeding opportunities may be constrained. Integration of hydraulic habitat models, with fish preference curves and the long term hydrological data allows us to assess whether long-term changes in hydroclimate may be affecting juvenile salmonid populations in the study stream.

Mapping Candidate Ecological Restoration Areas Using Morphological Spatial Pattern Analysis (MSPA)

EPA Science Inventory

Morphological Spatial Pattern Analysis (MSPA) has been widely adopted by landscape ecologists over the past decade. A few examples of its many uses include: 1) quantifying landscape indicators and fragmentation in continental forest assessments, 2) explaining interior-exterior p...

Role of large wood (LW) in rivers affected by the 2008 Chaitén volcano explosive eruption

NASA Astrophysics Data System (ADS)

Iroume, A.; Andreoli, A.; Ulloa, H.; Merino, A.; da Canal, M.; Iroume, A., Jr.

2010-12-01

In January 2010 we begun a research to study LW quantity, spatial distribution and transport rate, sediment and discharge quantification and channel morphology in different rivers affected by 2008 Chaitén volcano eruption. This document presents some insights from a first survey on LW characterization and its effect on river channel morphology. We monitored the following streams in the Chaiten area: Rio Chaitén (Rio Blanco) heavily impacted by pyroclastic flow, lahars flow and seasonal floods, the Rio Negro affected by ash deposits and seasonal flows and the Rio Rayas impacted by lahars flow and glacial melting. In this document we concentrated on Rio Chaitén. We are characterizing longitudinal distribution, volume and structures of LW (wood elements of more than 10 cm of diameter and 1 m of longitude) through field sampling and photogrammetric interpretation and studying LW mobilization using active (RFID) and passive tags. We select representative cross-sections for repeated measurements. Future surveys will include seasonal suspended and bedload sampling, LW spatial distribution and influence on channel morphology and bank erosion and LW mobilization linked with floods and channel geometry changes. During the first field survey we found huge LW input rate due to eruption influence (killed trees and pyroclastic flows and floods), erosion of different terraces generated from intense debris-flow sedimentations caused by Chaitén Volcano explosion, typical on stream LW structures (log-steps, jams) contributing to streambed stability and channel avulsion caused by log-dams. Also, LW deposited parallel to stream indicates high mobilization and LW deposited on external curve contribute to bank stabilization. We measured high sediment transport rate also in low-flow conditions due to huge availability of fine volcanic sediments. Associated risks to LW are: dam break processes, more channel avulsion caused by log accumulations, flow resistance increase favoring channel divagation (especially important for town segment) and logs floating downstream can obstruct/damage bridges and culverts. Funding for this research has been provided by Chile's National Research Foundation through FONDECYT Projects N 1080249 and 1090774. The authors thank USGS and SERNAGEOMIN for their cooperation.

Strongly nonlinear theory of rapid solidification near absolute stability

NASA Astrophysics Data System (ADS)

Kowal, Katarzyna N.; Altieri, Anthony L.; Davis, Stephen H.

2017-10-01

We investigate the nonlinear evolution of the morphological deformation of a solid-liquid interface of a binary melt under rapid solidification conditions near two absolute stability limits. The first of these involves the complete stabilization of the system to cellular instabilities as a result of large enough surface energy. We derive nonlinear evolution equations in several limits in this scenario and investigate the effect of interfacial disequilibrium on the nonlinear deformations that arise. In contrast to the morphological stability problem in equilibrium, in which only cellular instabilities appear and only one absolute stability boundary exists, in disequilibrium the system is prone to oscillatory instabilities and a second absolute stability boundary involving attachment kinetics arises. Large enough attachment kinetics stabilize the oscillatory instabilities. We derive a nonlinear evolution equation to describe the nonlinear development of the solid-liquid interface near this oscillatory absolute stability limit. We find that strong asymmetries develop with time. For uniform oscillations, the evolution equation for the interface reduces to the simple form f''+(βf')2+f =0 , where β is the disequilibrium parameter. Lastly, we investigate a distinguished limit near both absolute stability limits in which the system is prone to both cellular and oscillatory instabilities and derive a nonlinear evolution equation that captures the nonlinear deformations in this limit. Common to all these scenarios is the emergence of larger asymmetries in the resulting shapes of the solid-liquid interface with greater departures from equilibrium and larger morphological numbers. The disturbances additionally sharpen near the oscillatory absolute stability boundary, where the interface becomes deep-rooted. The oscillations are time-periodic only for small-enough initial amplitudes and their frequency depends on a single combination of physical parameters, including the morphological number, as well as the amplitude. The critical amplitude, at which solutions loose periodicity, depends on a single combination of parameters independent of the morphological number that indicate that non-periodic growth is most commonly present for moderate disequilibrium parameters. The spatial distribution of the interface develops deepening roots at late times. Similar spatial distributions are also seen in the limit in which both the cellular and oscillatory modes are close to absolute stability, and the roots deepen with larger departures from the two absolute stability boundaries.

Statistical Distribution of Inflation on Lava Flows: Analysis of Flow Surfaces on Earth and Mars

NASA Technical Reports Server (NTRS)

Glazel, L. S.; Anderson, S. W.; Stofan, E. R.; Baloga, S.

2003-01-01

The surface morphology of a lava flow results from processes that take place during the emplacement of the flow. Certain types of features, such as tumuli, lava rises and lava rise pits, are indicators of flow inflation or endogenous growth of a lava flow. Tumuli in particular have been identified as possible indicators of tube location, indicating that their distribution on the surface of a lava flow is a junction of the internal pathways of lava present during flow emplacement. However, the distribution of tumuli on lava flows has not been examined in a statistically thorough manner. In order to more rigorously examine the distribution of tumuli on a lava flow, we examined a discrete flow lobe with numerous lava rises and tumuli on the 1969 - 1974 Mauna Ulu flow at Kilauea, Hawaii. The lobe is located in the distal portion of the flow below Holei Pali, which is characterized by hummocky pahoehoe flows emplaced from tubes. We chose this flow due to its discrete nature allowing complete mapping of surface morphologies, well-defined boundaries, well-constrained emplacement parameters, and known flow thicknesses. In addition, tube locations for this Mauna Ulu flow were mapped by Holcomb (1976) during flow emplacement. We also examine the distribution of tumuli on the distal portion of the hummocky Thrainsskjoldur flow field provided by Rossi and Gudmundsson (1996). Analysis of the Mauna Ulu and Thrainsskjoldur flow lobes and the availability of high-resolution MOC images motivated us to look for possible tumuli-dominated flow lobes on the surface of Mars. We identified a MOC image of a lava flow south of Elysium Mons with features morphologically similar to tumuli. The flow is characterized by raised elliptical to circular mounds, some with axial cracks, that are similar in size to the tumuli measured on Earth. One potential avenue of determining whether they are tumuli is to look at the spatial distribution to see if any patterns similar to those of tumuli-dominated terrestrial flows can be identified. Since tumuli form by the injection of lava beneath a crust, the distribution of tumuli on a flow should represent the distribution of thermally preferred pathways beneath the surface of the crust. That distribution of thermally preferred pathways may be a function of the evolution of a basaltic lava flow. As a longer-lived flow evolves, initially broad thermally preferred pathways would evolve to narrower, more well-defined tube-like pathways. The final flow morphology clearly preserves the growth of the flow over time, with inflation features indicating pathways that were not necessarily contemporaneously active. Here, we test using statistical analysis whether this final flow morphology produces distinct distributions that can be used to readily determine the distribution of thermally preferred pathways beneath the surface of the crust.

Spatially variant morphological restoration and skeleton representation.

PubMed

Bouaynaya, Nidhal; Charif-Chefchaouni, Mohammed; Schonfeld, Dan

2006-11-01

The theory of spatially variant (SV) mathematical morphology is used to extend and analyze two important image processing applications: morphological image restoration and skeleton representation of binary images. For morphological image restoration, we propose the SV alternating sequential filters and SV median filters. We establish the relation of SV median filters to the basic SV morphological operators (i.e., SV erosions and SV dilations). For skeleton representation, we present a general framework for the SV morphological skeleton representation of binary images. We study the properties of the SV morphological skeleton representation and derive conditions for its invertibility. We also develop an algorithm for the implementation of the SV morphological skeleton representation of binary images. The latter algorithm is based on the optimal construction of the SV structuring element mapping designed to minimize the cardinality of the SV morphological skeleton representation. Experimental results show the dramatic improvement in the performance of the SV morphological restoration and SV morphological skeleton representation algorithms in comparison to their translation-invariant counterparts.

An Integrative Platform for Three-dimensional Quantitative Analysis of Spatially Heterogeneous Metastasis Landscapes

NASA Astrophysics Data System (ADS)

Guldner, Ian H.; Yang, Lin; Cowdrick, Kyle R.; Wang, Qingfei; Alvarez Barrios, Wendy V.; Zellmer, Victoria R.; Zhang, Yizhe; Host, Misha; Liu, Fang; Chen, Danny Z.; Zhang, Siyuan

2016-04-01

Metastatic microenvironments are spatially and compositionally heterogeneous. This seemingly stochastic heterogeneity provides researchers great challenges in elucidating factors that determine metastatic outgrowth. Herein, we develop and implement an integrative platform that will enable researchers to obtain novel insights from intricate metastatic landscapes. Our two-segment platform begins with whole tissue clearing, staining, and imaging to globally delineate metastatic landscape heterogeneity with spatial and molecular resolution. The second segment of our platform applies our custom-developed SMART 3D (Spatial filtering-based background removal and Multi-chAnnel forest classifiers-based 3D ReconsTruction), a multi-faceted image analysis pipeline, permitting quantitative interrogation of functional implications of heterogeneous metastatic landscape constituents, from subcellular features to multicellular structures, within our large three-dimensional (3D) image datasets. Coupling whole tissue imaging of brain metastasis animal models with SMART 3D, we demonstrate the capability of our integrative pipeline to reveal and quantify volumetric and spatial aspects of brain metastasis landscapes, including diverse tumor morphology, heterogeneous proliferative indices, metastasis-associated astrogliosis, and vasculature spatial distribution. Collectively, our study demonstrates the utility of our novel integrative platform to reveal and quantify the global spatial and volumetric characteristics of the 3D metastatic landscape with unparalleled accuracy, opening new opportunities for unbiased investigation of novel biological phenomena in situ.

An asymmetric jet-launching model for the protoplanetary nebula CRL 618

DOE Office of Scientific and Technical Information (OSTI.GOV)

Velázquez, Pablo F.; Raga, Alejandro C.; Toledo-Roy, Juan C.

We propose an asymmetrical jet-ejection mechanism in order to model the mirror symmetry observed in the lobe distribution of some protoplanetary nebulae (pPNs), such as the pPN CRL 618. Three-dimensional hydrodynamical simulations of a precessing jet launched from an orbiting source were carried out, including an alternation in the ejections of the two outflow lobes, depending on which side of the precessing accretion disk is hit by the accretion column from a Roche lobe-filling binary companion. Both synthetic optical emission maps and position-velocity diagrams were obtained from the numerical results with the purpose of carrying out a direct comparison withmore » observations. Depending on the observer's point of view, multipolar morphologies are obtained that exhibit a mirror symmetry at large distances from the central source. The obtained lobe sizes and their spatial distributions are in good agreement with the observed morphology of the pPN CRL 618. We also obtain that the kinematic ages of the fingers are similar to those obtained in the observations.« less

Calibration of a distributed hydrologic model using observed spatial patterns from MODIS data

NASA Astrophysics Data System (ADS)

Demirel, Mehmet C.; González, Gorka M.; Mai, Juliane; Stisen, Simon

2016-04-01

Distributed hydrologic models are typically calibrated against streamflow observations at the outlet of the basin. Along with these observations from gauging stations, satellite based estimates offer independent evaluation data such as remotely sensed actual evapotranspiration (aET) and land surface temperature. The primary objective of the study is to compare model calibrations against traditional downstream discharge measurements with calibrations against simulated spatial patterns and combinations of both types of observations. While the discharge based model calibration typically improves the temporal dynamics of the model, it seems to give rise to minimum improvement of the simulated spatial patterns. In contrast, objective functions specifically targeting the spatial pattern performance could potentially increase the spatial model performance. However, most modeling studies, including the model formulations and parameterization, are not designed to actually change the simulated spatial pattern during calibration. This study investigates the potential benefits of incorporating spatial patterns from MODIS data to calibrate the mesoscale hydrologic model (mHM). This model is selected as it allows for a change in the spatial distribution of key soil parameters through the optimization of pedo-transfer function parameters and includes options for using fully distributed daily Leaf Area Index (LAI) values directly as input. In addition the simulated aET can be estimated at a spatial resolution suitable for comparison to the spatial patterns observed with MODIS data. To increase our control on spatial calibration we introduced three additional parameters to the model. These new parameters are part of an empirical equation to the calculate crop coefficient (Kc) from daily LAI maps and used to update potential evapotranspiration (PET) as model inputs. This is done instead of correcting/updating PET with just a uniform (or aspect driven) factor used in the mHM model (version 5.3). We selected the 20 most important parameters out of 53 mHM parameters based on a comprehensive sensitivity analysis (Cuntz et al., 2015). We calibrated 1km-daily mHM for the Skjern basin in Denmark using the Shuffled Complex Evolution (SCE) algorithm and inputs at different spatial scales i.e. meteorological data at 10km and morphological data at 250 meters. We used correlation coefficients between observed monthly (summer months only) MODIS data calculated from cloud free days over the calibration period from 2001 to 2008 and simulated aET from mHM over the same period. Similarly other metrics, e.g mapcurves and fraction skill-score, are also included in our objective function to assess the co-location of the grid-cells. The preliminary results show that multi-objective calibration of mHM against observed streamflow and spatial patterns together does not significantly reduce the spatial errors in aET while it improves the streamflow simulations. This is a strong signal for further investigation of the multi parameter regionalization affecting spatial aET patterns and weighting the spatial metrics in the objective function relative to the streamflow metrics.

Separating foliar physiology from morphology reveals the relative roles of vertically structured transpiration factors within red maple crowns and limitations of larger scale models

PubMed Central

Bauerle, William L.; Bowden, Joseph D.

2011-01-01

A spatially explicit mechanistic model, MAESTRA, was used to separate key parameters affecting transpiration to provide insights into the most influential parameters for accurate predictions of within-crown and within-canopy transpiration. Once validated among Acer rubrum L. genotypes, model responses to different parameterization scenarios were scaled up to stand transpiration (expressed per unit leaf area) to assess how transpiration might be affected by the spatial distribution of foliage properties. For example, when physiological differences were accounted for, differences in leaf width among A. rubrum L. genotypes resulted in a 25% difference in transpiration. An in silico within-canopy sensitivity analysis was conducted over the range of genotype parameter variation observed and under different climate forcing conditions. The analysis revealed that seven of 16 leaf traits had a ≥5% impact on transpiration predictions. Under sparse foliage conditions, comparisons of the present findings with previous studies were in agreement that parameters such as the maximum Rubisco-limited rate of photosynthesis can explain ∼20% of the variability in predicted transpiration. However, the spatial analysis shows how such parameters can decrease or change in importance below the uppermost canopy layer. Alternatively, model sensitivity to leaf width and minimum stomatal conductance was continuous along a vertical canopy depth profile. Foremost, transpiration sensitivity to an observed range of morphological and physiological parameters is examined and the spatial sensitivity of transpiration model predictions to vertical variations in microclimate and foliage density is identified to reduce the uncertainty of current transpiration predictions. PMID:21617246

Advances in Spectral-Spatial Classification of Hyperspectral Images

NASA Technical Reports Server (NTRS)

Fauvel, Mathieu; Tarabalka, Yuliya; Benediktsson, Jon Atli; Chanussot, Jocelyn; Tilton, James C.

2012-01-01

Recent advances in spectral-spatial classification of hyperspectral images are presented in this paper. Several techniques are investigated for combining both spatial and spectral information. Spatial information is extracted at the object (set of pixels) level rather than at the conventional pixel level. Mathematical morphology is first used to derive the morphological profile of the image, which includes characteristics about the size, orientation, and contrast of the spatial structures present in the image. Then, the morphological neighborhood is defined and used to derive additional features for classification. Classification is performed with support vector machines (SVMs) using the available spectral information and the extracted spatial information. Spatial postprocessing is next investigated to build more homogeneous and spatially consistent thematic maps. To that end, three presegmentation techniques are applied to define regions that are used to regularize the preliminary pixel-wise thematic map. Finally, a multiple-classifier (MC) system is defined to produce relevant markers that are exploited to segment the hyperspectral image with the minimum spanning forest algorithm. Experimental results conducted on three real hyperspectral images with different spatial and spectral resolutions and corresponding to various contexts are presented. They highlight the importance of spectral–spatial strategies for the accurate classification of hyperspectral images and validate the proposed methods.

Shallow and deep fresh impact craters in Hesperia Planum, Mars

NASA Technical Reports Server (NTRS)

Mouginis-Mark, Peter J.; Hayashi, Joan N.

1993-01-01

The depths of 109 impact craters about 2-16 km in diameter, located on the ridged plains materials of Hesperia Planum, Mars, have been measured from their shadow lengths using digital Viking Orbiter images (orbit numbers 417S-419S) and the PICS computer software. On the basis of their pristine morphology (very fresh lobate ejecta blankets, well preserved rim crests, and lack of superposed impact craters), 57 of these craters have been selected for detailed analysis of their spatial distribution and geometry. We find that south of 30 deg S, craters less than 6.0 km in diameter are markedly shallower than similar-sized craters equatorward of this latitude. No comparable relationship is observed for morphologically fresh craters greater than 6.0 km diameter. We also find that two populations exist for older craters less than 6.0 km diameter. When craters that lack ejecta blankets are grouped on the basis of depth/diameter ratio, the deeper craters also typically lie equatorward of 30 S. We interpret the spatial variation in crater depth/diameter ratios as most likely due to a poleward increase in volatiles within the top 400 m of the surface at the times these craters were formed.

Prospects of photonic nanojets for precise exposure on microobjects

DOE Office of Scientific and Technical Information (OSTI.GOV)

Geints, Yu. E., E-mail: ygeints@iao.ru; Zuev Institute of Atmospheric Optics, SB Russian Academy of Sciences, Acad. Zuev Square 1, Tomsk, 634021; Panina, E. K., E-mail: pek@iao.ru

We report on the new optical tool for precise manipulation of various microobjects. This tool is referred to as a “photonic nanojet” (PJ) and corresponds to specific spatially localized and high-intensity area formed near micron-sized transparent spherical dielectric particles illuminated by a visible laser radiation The descriptive analysis of the morphological shapes of photonic nanojets is presented. The PJ shape characterization is based on the numerical calculations of the near-field distribution according to the Mie theory and accounts for jet dimensions and shape complexity.

Seafloor heterogeneity influences the biodiversity–ecosystem functioning relationships in the deep sea

PubMed Central

Zeppilli, Daniela; Pusceddu, Antonio; Trincardi, Fabio; Danovaro, Roberto

2016-01-01

Theoretical ecology predicts that heterogeneous habitats allow more species to co-exist in a given area. In the deep sea, biodiversity is positively linked with ecosystem functioning, suggesting that deep-seabed heterogeneity could influence ecosystem functions and the relationships between biodiversity and ecosystem functioning (BEF). To shed light on the BEF relationships in a heterogeneous deep seabed, we investigated variations in meiofaunal biodiversity, biomass and ecosystem efficiency within and among different seabed morphologies (e.g., furrows, erosional troughs, sediment waves and other depositional structures, landslide scars and deposits) in a narrow geo-morphologically articulated sector of the Adriatic Sea. We show that distinct seafloor morphologies are characterized by highly diverse nematode assemblages, whereas areas sharing similar seabed morphologies host similar nematode assemblages. BEF relationships are consistently positive across the entire region, but different seabed morphologies are characterised by different slope coefficients of the relationship. Our results suggest that seafloor heterogeneity, allowing diversified assemblages across different habitats, increases diversity and influence ecosystem processes at the regional scale, and BEF relationships at smaller spatial scales. We conclude that high-resolution seabed mapping and a detailed analysis of the species distribution at the habitat scale are crucial for improving management of goods and services delivered by deep-sea ecosystems. PMID:27211908

Impact of Ice Morphology on Design Space of Pharmaceutical Freeze-Drying.

PubMed

Goshima, Hiroshika; Do, Gabsoo; Nakagawa, Kyuya

2016-06-01

It has been known that the sublimation kinetics of a freeze-drying product is affected by its internal ice crystal microstructures. This article demonstrates the impact of the ice morphologies of a frozen formulation in a vial on the design space for the primary drying of a pharmaceutical freeze-drying process. Cross-sectional images of frozen sucrose-bovine serum albumin aqueous solutions were optically observed and digital pictures were acquired. Binary images were obtained from the optical data to extract the geometrical parameters (i.e., ice crystal size and tortuosity) that relate to the mass-transfer resistance of water vapor during the primary drying step. A mathematical model was used to simulate the primary drying kinetics and provided the design space for the process. The simulation results predicted that the geometrical parameters of frozen solutions significantly affect the design space, with large and less tortuous ice morphologies resulting in wide design spaces and vice versa. The optimal applicable drying conditions are influenced by the ice morphologies. Therefore, owing to the spatial distributions of the geometrical parameters of a product, the boundary curves of the design space are variable and could be tuned by controlling the ice morphologies. Copyright © 2016 American Pharmacists Association®. Published by Elsevier Inc. All rights reserved.

Making quantitative morphological variation from basic developmental processes: where are we? The case of the Drosophila wing

PubMed Central

Alexis, Matamoro-Vidal; Isaac, Salazar-Ciudad; David, Houle

2015-01-01

One of the aims of evolutionary developmental biology is to discover the developmental origins of morphological variation. The discipline has mainly focused on qualitative morphological differences (e.g., presence or absence of a structure) between species. Studies addressing subtle, quantitative variation are less common. The Drosophila wing is a model for the study of development and evolution, making it suitable to investigate the developmental mechanisms underlying the subtle quantitative morphological variation observed in nature. Previous reviews have focused on the processes involved in wing differentiation, patterning and growth. Here, we investigate what is known about how the wing achieves its final shape, and what variation in development is capable of generating the variation in wing shape observed in nature. Three major developmental stages need to be considered: larval development, pupariation, and pupal development. The major cellular processes involved in the determination of tissue size and shape are cell proliferation, cell death, oriented cell division and oriented cell intercalation. We review how variation in temporal and spatial distribution of growth and transcription factors affects these cellular mechanisms, which in turn affects wing shape. We then discuss which aspects of the wing morphological variation are predictable on the basis of these mechanisms. PMID:25619644

Size-ordered 63Ni nanocluster film as a betavoltaic battery unit

NASA Astrophysics Data System (ADS)

Borisyuk, P. V.; Yakovlev, V. P.; Vasiliev, O. S.; Lebedinskii, Yu. Yu.; Fetisov, V. V.; Kozlova, T. I.; Kozodaev, M. G.

2018-04-01

We create thin metallic films formed as a size-ordered deposition of Ni nanoclusters whose sizes are distributed over the range of 2-7 nm. The morphology, chemical composition, and electrical characteristics of the films are measured. The conductivity of the films under investigation changes approximately as the inverse square root of the average nanocluster size. We observe experimentally that, under irradiation by electrons with energies of 10-25 keV, the films show signs of being subjected to the electromotive force. We discuss how this effect is connected with the size-ordered spatial distribution of metallic nanoclusters. We analyze the possibility of using 63Ni nanocluster films in betavoltaic battery units and estimate the expected efficiency of converting β-decay energy into electricity.

Spatial variation of peat soil properties in the oil-producing region of northeastern Sakhalin

NASA Astrophysics Data System (ADS)

Lipatov, D. N.; Shcheglov, A. I.; Manakhov, D. V.; Zavgorodnyaya, Yu. A.; Rozanova, M. S.; Brekhov, P. T.

2017-07-01

Morphology and properties of medium-deep oligotrophic peat, oligotrophic peat gley, pyrogenic oligotrophic peat gley, and peat gley soils on subshrub-cotton grass-sphagnum bogs and in swampy larch forests of northeastern Sakhalin have been studied. Variation in the thickness and reserves of litters in the studied bog and forest biogeocenoses has been analyzed. The profile distribution and spatial variability of moisture, density, ash, and pHKCl in separate groups of peat soils have been described. The content and spatial variability of petroleum hydrocarbons have been considered in relation to the accumulation of natural bitumoids by peat soils and the technogenic pressing in the oil-producing region. Variation of each parameter at different distances (10, 50, and 1000 m) has been estimated using a hierarchical sampling scheme. The spatial conjugation of soil parameters has been studied by factor analysis using the principal components method and Spearman correlation coefficients. Regression equations have been proposed to describe relationships of ash content with soil density and content of petroleum hydrocarbons in peat horizons.

Spatially Resolved Quantification of the Surface Reactivity of Solid Catalysts.

PubMed

Huang, Bing; Xiao, Li; Lu, Juntao; Zhuang, Lin

2016-05-17

A new property is reported that accurately quantifies and spatially describes the chemical reactivity of solid surfaces. The core idea is to create a reactivity weight function peaking at the Fermi level, thereby determining a weighted summation of the density of states of a solid surface. When such a weight function is defined as the derivative of the Fermi-Dirac distribution function at a certain non-zero temperature, the resulting property is the finite-temperature chemical softness, termed Fermi softness (SF ), which turns out to be an accurate descriptor of the surface reactivity. The spatial image of SF maps the reactive domain of a heterogeneous surface and even portrays morphological details of the reactive sites. SF analyses reveal that the reactive zones on a Pt3 Y(111) surface are the platinum sites rather than the seemingly active yttrium sites, and the reactivity of the S-dimer edge of MoS2 is spatially anisotropic. Our finding is of fundamental and technological significance to heterogeneous catalysis and industrial processes demanding rational design of solid catalysts. © 2016 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Disturbance Frequency Determines Morphology and Community Development in Multi-Species Biofilm at the Landscape Scale

PubMed Central

Milferstedt, Kim; Santa-Catalina, Gaëlle; Godon, Jean-Jacques; Escudié, Renaud; Bernet, Nicolas

2013-01-01

Many natural and engineered biofilm systems periodically face disturbances. Here we present how the recovery time of a biofilm between disturbances (expressed as disturbance frequency) shapes the development of morphology and community structure in a multi-species biofilm at the landscape scale. It was hypothesized that a high disturbance frequency favors the development of a stable adapted biofilm system while a low disturbance frequency promotes a dynamic biofilm response. Biofilms were grown in laboratory-scale reactors over a period of 55-70 days and exposed to the biocide monochloramine at two frequencies: daily or weekly pulse injections. One untreated reactor served as control. Biofilm morphology and community structure were followed on comparably large biofilm areas at the landscape scale using automated image analysis (spatial gray level dependence matrices) and community fingerprinting (single-strand conformation polymorphisms). We demonstrated that a weekly disturbed biofilm developed a resilient morphology and community structure. Immediately after the disturbance, the biofilm simplified but recovered its initial complex morphology and community structure between two biocide pulses. In the daily treated reactor, one organism largely dominated a morphologically simple and stable biofilm. Disturbances primarily affected the abundance distribution of already present bacterial taxa but did not promote growth of previously undetected organisms. Our work indicates that disturbances can be used as lever to engineer biofilms by maintaining a biofilm between two developmental states. PMID:24303024

Compaction of quasi-one-dimensional elastoplastic materials.

PubMed

Shaebani, M Reza; Najafi, Javad; Farnudi, Ali; Bonn, Daniel; Habibi, Mehdi

2017-06-06

Insight into crumpling or compaction of one-dimensional objects is important for understanding biopolymer packaging and designing innovative technological devices. By compacting various types of wires in rigid confinements and characterizing the morphology of the resulting crumpled structures, here, we report how friction, plasticity and torsion enhance disorder, leading to a transition from coiled to folded morphologies. In the latter case, where folding dominates the crumpling process, we find that reducing the relative wire thickness counter-intuitively causes the maximum packing density to decrease. The segment size distribution gradually becomes more asymmetric during compaction, reflecting an increase of spatial correlations. We introduce a self-avoiding random walk model and verify that the cumulative injected wire length follows a universal dependence on segment size, allowing for the prediction of the efficiency of compaction as a function of material properties, container size and injection force.

Spatial Temperature Mapping within Polymer Nanocomposites Undergoing Ultrafast Photothermal Heating via Gold Nanorods

PubMed Central

Maity, Somsubhra; Wu, Wei-Chen; Xu, Chao; Tracy, Joseph B.; Gundogdu, Kenan; Bochinski, Jason R.; Clarke, Laura I.

2015-01-01

Heat emanates from gold nanorods (GNRs) under ultrafast optical excitation of the localized surface plasmon resonance. The steady state nanoscale temperature distribution formed within a polymer matrix embedded with GNRs undergoing pulsed femtosecond photothermal heating is determined experimentally using two independent ensemble optical techniques. Physical rotation of the nanorods reveals the average local temperature of the polymer melt in the immediate spatial volume surrounding them while fluorescence of homogeneously-distributed perylene molecules monitors temperature over sample regions at larger distances from the GNRs. Polarization-sensitive fluorescence measurements of the perylene probes provide an estimate of the average size of the quasi-molten region surrounding each nanorod (that is, the boundary between softened polymer and solid material as the temperature decreases radially away from each particle) and distinguishes the steady state temperature in the solid and melt regions. Combining these separate methods enables nanoscale spatial mapping of the average steady state temperature distribution caused by ultrafast excitation of the GNRs. These observations definitively demonstrate the presence of a steady-state temperature gradient and indicate that localized heating via the photothermal effect within materials enables nanoscale thermal manipulations without significantly altering the bulk sample temperature in these systems. These quantitative results are further verified by reorienting nanorods within a solid polymer nanofiber without inducing any morphological changes to the highly temperature-sensitive nanofiber surface. Temperature differences of 70 – 90 °C were observed over a distances of ~100 nm. PMID:25379775

Bedload fluctuations in a steep macro-rough channel

NASA Astrophysics Data System (ADS)

Ghilardi, Tamara; Franca, Mário J.; Schleiss, Anton J.

2014-05-01

It is known that bedload fluctuates over time in steep rivers with wide grain size distributions, even when conditions of constant sediment feed and water discharge are met. Bedload fluctuations are periodic and related to fluctuations in the flow velocity and channel bed morphology. In cascade morphologies, the presence of large relatively immobile boulders has a strong impact on flow conditions and sediment transport; their influence on bedload fluctuations is considered in this research. Sediment transport fluctuations were investigated in a set of 38 laboratory experiments carried out on a steep tilting flume, under several conditions of constant sediment and water discharge, for three different slopes (S=6.7%, 9.9%, and 13%). The impact of the diameter and spatial density of randomly placed boulders was studied for several flow conditions. Along with the sediment transport and bulk mean flow velocity, the boulder protrusion, boulder surface, and number of hydraulic jumps, which are indicators of the channel morphology, were measured regularly during the experiments. Periodic bedload pulses are clearly visible in the data collected during the experiments, along with well correlated fluctuations in the flow velocity and bed morphology parameters. Well-behaved cyclic oscillations in the auto-correlation and cross-correlation functions confirm the periodicity of the observed fluctuations and show that the durations of these cycles are similar, although not necessarily in phase. A detailed analysis of data time series and image acquired during the tests show a link between bedload pulses and different bed states, boulder protrusion, and surface grain size distributions. A feedback system exists among channel morphology, flow kinematics and sediment transport. A phase analysis for the observed variables, based on the identification of bedload cycles in the instantaneous signal, is performed. The link between the phases of bedload and each of the morphological parameters show a hysteretic path. The relation between the phase-averaged bedload and the phase-averaged flow velocity show a considerable lesser degree of hysteresis. Comparing the phase averaged bedload of the experiments, it is observed that the shape of bedload cycles is the same for all tested hydraulic conditions. The cycles present a long duration low sediment transport event and a shorter peak transport event. This indicates that long periods of sediment aggradations alternate with short erosion periods, even under constant hydraulic conditions. The bedload pulses may be characterized by their amplitude and period as a function of various boulder spatial densities and diameters. We show that for higher stream power, the fluctuations decrease, both in cycle duration and in amplitude. The presence of boulders increases the stream power needed to transport a given amount of sediment, thus decreasing fluctuations. KEY WORDS: Bedload fluctuations; Morphological changes; Sediment transport; Boulders; Steep channel.

McGET: A rapid image-based method to determine the morphological characteristics of gravels on the Gobi desert surface

NASA Astrophysics Data System (ADS)

Mu, Yue; Wang, Feng; Zheng, Bangyou; Guo, Wei; Feng, Yiming

2018-03-01

The relationship between morphological characteristics (e.g. gravel size, coverage, angularity and orientation) and local geomorphic features (e.g. slope gradient and aspect) of desert has been used to explore the evolution process of Gobi desert. Conventional quantification methods are time-consuming, inefficient and even prove impossible to determine the characteristics of large numbers of gravels. We propose a rapid image-based method to obtain the morphological characteristics of gravels on the Gobi desert surface, which is called the "morphological characteristics gained effectively technique" (McGET). The image of the Gobi desert surface was classified into gravel clusters and background by a machine-learning "classification and regression tree" (CART) algorithm. Then gravel clusters were segmented into individual gravel clasts by separating objects in images using a "watershed segmentation" algorithm. Thirdly, gravel coverage, diameter, aspect ratio and orientation were calculated based on the basic principles of 2D computer graphics. We validated this method with two independent datasets in which the gravel morphological characteristics were obtained from 2728 gravels measured in the field and 7422 gravels measured by manual digitization. Finally, we applied McGET to derive the spatial variation of gravel morphology on the Gobi desert along an alluvial-proluvial fan located in Hami, Xinjiang, China. The validated results show that the mean gravel diameter measured in the field agreed well with that calculated by McGET for large gravels (R2 = 0.89, P < 0.001). Compared to manual digitization, the McGET accuracies for gravel coverage, gravel diameter and aspect ratio were 97%, 83% and 96%, respectively. The orientation distributions calculated were consistent across two different methods. More importantly, McGET significantly shortens the time cost in obtaining gravel morphological characteristics in the field and laboratory. The spatial variation results show that the gravel coverage ranged from 88% to 65%, the gravel diameter was unimodally distributed and ranged from 19 mm to 13 mm. Most gravels were bladed or rod-like, with a mean aspect ratio of 1.57, and had no preferred orientation on the surveyed Gobi desert. From the center to the edge of the fan, gravel coverage decreased 2.2% per 100 m elevation decrease (R2 = 0.69, P < 0.001), mean gravel diameter decreased 0.5 mm per 100 m elevation decrease (R2 = 0.52, P < 0.001), and mean aspect ratio slightly increased 0.004 per 100 m elevation decrease (R2 = 0.26, P < 0.05). These results imply that surface washing was the main process on the investigated Gobi desert. This study demonstrates that the new method can quickly and accurately calculate the gravel coverage, diameter, aspect ratio and orientation from the images of Gobi desert.

A morphologic proxy for debris flow erosion with application to the earthquake deformation cycle, Cascadia Subduction Zone, USA

NASA Astrophysics Data System (ADS)

Penserini, Brian D.; Roering, Joshua J.; Streig, Ashley

2017-04-01

In unglaciated steeplands, valley reaches dominated by debris flow scour and incision set landscape form as they often account for > 80% of valley network length and relief. While hillslope and fluvial process models have frequently been combined with digital topography to develop morphologic proxies for erosion rate and drainage divide migration, debris-flow-dominated networks, despite their ubiquity, have not been exploited for this purpose. Here, we applied an empirical function that describes how slope-area data systematically deviate from so-called fluvial power-law behavior at small drainage areas. Using airborne LiDAR data for 83 small ( 1 km2) catchments in the western Oregon Coast Range, we quantified variation in model parameters and observed that the curvature of the power-law scaling deviation varies with catchment-averaged erosion rate estimated from cosmogenic nuclides in stream sediments. Given consistent climate and lithology across our study area and assuming steady erosion, we used this calibrated denudation-morphology relationship to map spatial patterns of long-term uplift for our study catchments. By combining our predicted pattern of long-term uplift rate with paleoseismic and geodetic (tide gauge, GPS, and leveling) data, we estimated the spatial distribution of coseismic subsidence experienced during megathrust earthquakes along the Cascadia Subduction Zone. Our estimates of coseismic subsidence near the coast (0.4 to 0.7 m for earthquake recurrence intervals of 300 to 500 years) agree with field measurements from numerous stratigraphic studies. Our results also demonstrate that coseismic subsidence decreases inland to negligible values > 25 km from the coast, reflecting the diminishing influence of the earthquake deformation cycle on vertical changes of the interior coastal ranges. More generally, our results demonstrate that debris flow valley networks serve as highly localized, yet broadly distributed indicators of erosion (and rock uplift), making them invaluable for mapping crustal deformation and landscape adjustment.

Resolving Electrode Morphology’s Impact on Platinum Group Metal-Free Cathode Performance Using Nano-CT of 3D Hierarchical Pore and Ionomer Distribution

DOE Office of Scientific and Technical Information (OSTI.GOV)

Komini Babu, Siddharth; Chung, Hoon T.; Zelenay, Piotr

This paper reports on the characterization of polymer electrolyte fuel cell (PEFC) cathodes featuring a platinum group metal-free (PGM-free) catalyst using nano-scale resolution X-ray computed tomography (nano-CT) and morphological analysis. PGM-free PEFC cathodes have gained significant interest in the past decade since they have the potential to dramatically reduce PEFC costs by eliminating the large platinum (Pt) raw material cost. However, several challenges remain before they are commercially viable. Since these catalysts have lower volumetric activity, the PGM-free cathodes are thicker and are subject to increased gas and proton transport resistances that reduce the performance. To better understand the efficacymore » of the catalyst and improve electrode performance, a detailed understanding the correlation between electrode fabrication, morphology, and performance is crucial. In this work, the pore/solid structure and the ionomer distribution was resolved in three dimensions (3D) using nano-CT for three PGM-free electrodes of varying Nafion® loading. The associated transport properties were evaluated from pore/particlescale simulations within the nano-CT imaged structure. These characterizations are then used to elucidate the microstructural origins of the dramatic changes in fuel cell performance with varying Nafion® ionomer loading. We show that this is primarily a result of distinct changes in ionomer’s spatial distribution. The significant impact of electrode morphology on performance highlights the importance of PGM-free electrode development in concert with efforts to improve catalyst activity and durability.« less

Resolving Electrode Morphology’s Impact on Platinum Group Metal-Free Cathode Performance Using Nano-CT of 3D Hierarchical Pore and Ionomer Distribution

DOE PAGES

Komini Babu, Siddharth; Chung, Hoon T.; Zelenay, Piotr; ...

2016-11-02

This paper reports on the characterization of polymer electrolyte fuel cell (PEFC) cathodes featuring a platinum group metal-free (PGM-free) catalyst using nano-scale resolution X-ray computed tomography (nano-CT) and morphological analysis. PGM-free PEFC cathodes have gained significant interest in the past decade since they have the potential to dramatically reduce PEFC costs by eliminating the large platinum (Pt) raw material cost. However, several challenges remain before they are commercially viable. Since these catalysts have lower volumetric activity, the PGM-free cathodes are thicker and are subject to increased gas and proton transport resistances that reduce the performance. To better understand the efficacymore » of the catalyst and improve electrode performance, a detailed understanding the correlation between electrode fabrication, morphology, and performance is crucial. In this work, the pore/solid structure and the ionomer distribution was resolved in three dimensions (3D) using nano-CT for three PGM-free electrodes of varying Nafion® loading. The associated transport properties were evaluated from pore/particlescale simulations within the nano-CT imaged structure. These characterizations are then used to elucidate the microstructural origins of the dramatic changes in fuel cell performance with varying Nafion® ionomer loading. We show that this is primarily a result of distinct changes in ionomer’s spatial distribution. The significant impact of electrode morphology on performance highlights the importance of PGM-free electrode development in concert with efforts to improve catalyst activity and durability.« less

Meander morphodynamics over self-formed floodplains: can the migration history affect the future morphology of the river?

NASA Astrophysics Data System (ADS)

Bogoni, M.; Lanzoni, S.; Putti, M.

2017-12-01

Floodplains, and rivers therein, constitute complex systems whose simulation involves modeling of hydrodynamic, morphodynamic, chemical, and biological processes which act over a wide range of time scales (from days to centuries) and affect each other. Self-formed floodplains are produced by the sedimentary processes associated with the migration of river bends and the formation of abandoned oxbow lakes consequent to the cutoff of mature meanders. The erosion and deposition processes at the banks lead to heterogeneities in the surface composition, thus the river may experience faster or slower migration rates depending on the spatial distribution of the erosional resistance. As a consequence, the past spatial configurations of the river (i.e. the migration history) play a key role in shaping the successive river paths.We recently published a paper addressing the modeling of meander morphodynamics over self-formed heterogeneous floodplain. Results show that the heterogeneity in floodplain composition associated with the formation of geomorphic units (i.e., scroll bars and oxbow lakes) and the choice of a reliable flow field model to drive channel migration are two fundamental ingredients for reproducing correctly the long-term morphodynamics of alluvial meanders. We compare numerically generated planforms obtained for different scenarios of floodplain heterogeneity to natural meandering paths, through half meander metrics and spatial distribution of channel curvatures. Statistical and spectral tools disclose the complexity embedded in meandering geometry and the crucial differences between apparently similar configurations.Floodplain heterogeneity affects both the temporal and spatial distributions of meander geometry, and eventually leads to a closer statistical similarity between simulated and natural planform shapes when scroll bars and oxbow lakes left behind are harder to erode than the surrounding floodplain.

Morphology and Structure of Ultraluminous Infrared Galaxies at z ≈ 2 in the EGS Field

NASA Astrophysics Data System (ADS)

Fang, G. W.; Ma, Z. Y.; Chen, Y.; Kong, X.

2014-11-01

Using high-resolution HST WFC3 (Hubble Space Telescope Wide Field Camera 3) F160W imaging from the CANDELS-EGS (Cosmic Assembly Near-infrared Deep Extragalactic Legacy Survey-Extended Groth Strip) field, we present the morphology analysis of 9 ultraluminous infrared galaxies (ULIRGs) at z≈2. We find a wide range of morphological diversities for these ULIRGs, from spheroid to multiple bright nuclei or diffuse structures, e.g., double nuclei, bridges, dual asymmetries, irregular, or elliptical structures. In quantitative, these sources show a lower Gini coefficient (G) and a higher moment (M_{20}) in the rest-frame optical morphology, compared to the lower redshift counterparts, indicating less concentrated and symmetric spatial distribution of the stellar mass of ULIRGs at z≈2. Moreover, we derive accurate effective radii of these ULIRGs through 2-D profile fitting, which range from 2.4 to 5.8 kpc, with a mean value of (3.9±1.1) kpc. We find that the sizes of these ULIRGs at z≈2 are on average one to two times smaller than those of the local star-forming galaxies with analogous stellar mass. Our results are consistent with those studies at similar redshift and infrared luminosity.

Flow around an individual morphologically complex plant: investigating the role of plant aspect in the numerical prediction of complex river flow

NASA Astrophysics Data System (ADS)

Boothroyd, R.; Hardy, R. J.; Warburton, J.; Marjoribanks, T.

2015-12-01

Aquatic vegetation has a significant influence on the hydraulic functioning of river systems. Plant morphology has previously been shown to alter the mean and turbulent properties of flow, influenced by the spatial distribution of branches and foliage, and these effects can be further investigated through numerical models. We report on a novel method for the measurement and incorporation of complex plant morphologies into a computational fluid dynamics (CFD) model. The morphological complexity of Prunus laurocerasus is captured under foliated and defoliated states through terrestrial laser scanning (TLS). Point clouds are characterised by a voxelised representation and incorporated into a CFD scheme using a mass flux scaling algorithm, allowing the numerical prediction of flows around individual plants. Here we examine the sensitivity of plant aspect, i.e. the positioning of the plant relative to the primary flow direction, by rotating the voxelised plant representation through 15° increments (24 rotations) about the vertical axis. This enables the impact of plant aspect to be quantified upon the velocity and pressure fields, and in particular how this effects species-specific drag forces and drag coefficients. Plant aspect is shown to considerably influence the flow field response, producing spatially heterogeneous downstream velocity fields with both symmetric and asymmetric wake shapes, and point of reattachments that extend up to seven plant lengths downstream. For the same plant, changes in aspect are shown to account for a maximum variation in drag force of 168%, which equates to a 65% difference in the drag coefficient. An explicit consideration of plant aspect is therefore important in studies concerning flow-vegetation interactions, especially when reducing the uncertainty in parameterising the effect of vegetation in numerical models.

Mapping lava morphology of the Galapagos Spreading Center at 92°W: fuzzy logic provides a classification of high-resolution bathymetry and backscatter

NASA Astrophysics Data System (ADS)

McClinton, J. T.; White, S. M.; Sinton, J. M.; Rubin, K. H.; Bowles, J. A.

2010-12-01

Differences in axial lava morphology along the Galapagos Spreading Center (GSC) can indicate variations in magma supply and emplacement dynamics due to the influence of the adjacent Galapagos hot spot. Unfortunately, the ability to discriminate fine-scale lava morphology has historically been limited to observations of the small coverage areas of towed camera surveys and submersible operations. This research presents a neuro-fuzzy approach to automated seafloor classification using spatially coincident, high-resolution bathymetry and backscatter data. The classification method implements a Sugeno-type fuzzy inference system trained by a multi-layered adaptive neural network and is capable of rapidly classifying seafloor morphology based on attributes of surface geometry and texture. The system has been applied to the 92°W segment of the western GSC in order to quantify coverage areas and distributions of pillow, lobate, and sheet lava morphology. An accuracy assessment has been performed on the classification results. The resulting classified maps provide a high-resolution view of GSC axial morphology and indicate the study area terrain is approximately 40% pillow flows, 40% lobate and sheet flows, and 10% fissured or faulted area, with about 10% of the study area unclassifiable. Fine-scale features such as eruptive fissures, tumuli, and individual pillowed lava flow fronts are also visible. Although this system has been applied to lava morphology, its design and implementation are applicable to other undersea mapping applications.

[Relationships between settlement morphology transition and residents commuting energy consumption].

PubMed

Zhou, Jian; Xiao, Rong-Bo; Sun, Xiang

2013-07-01

Settlement morphology transition is triggered by rapid urbanization and urban expansion, but its relationships with residents commuting energy consumption remains ambiguous. It is of significance to understand the controlling mechanisms of sustainable public management policies on the energy consumption and greenhouse gases emission during the process of urban settlement morphology transition. Taking the Xiamen City of East China as a case, and by using the integrated land use and transportation modeling system TRANUS, a scenario analysis was made to study the effects of urban settlement morphology transition on the urban spatial distribution of population, jobs, and land use, and on the residents commuting energy consumption and greenhouse gasses emission under different scenarios. The results showed that under the Business As Usual (BAU) scenario, the energy consumption of the residents at the morning peak travel time was 54.35 tce, and the CO2 emission was 119.12 t. As compared with those under BAU scenario, both the energy consumption and the CO2 emission under the Transition of Settlement Morphology (TSM) scenario increased by 12%, and, with the implementation of the appropriate policies such as land use, transportation, and economy, the energy consumption and CO2 emission under the Transition of Settlement Morphology with Policies (TSMP) scenario reduced by 7%, indicating that urban public management policies could effectively control the growth of residents commuting energy consumption and greenhouse gases emission during the period of urban settlement morphology transition.

Detection of temperature distribution via recovering electrical conductivity in MREIT.

PubMed

Oh, Tong In; Kim, Hyung Joong; Jeong, Woo Chul; Chauhan, Munish; Kwon, Oh In; Woo, Eung Je

2013-04-21

In radiofrequency (RF) ablation or hyperthermia, internal temperature measurements and tissue property imaging are important to control their outputs and assess the treatment effect. Recently, magnetic resonance electrical impedance tomography (MREIT), as a non-invasive imaging method of internal conductivity distribution using an MR scanner, has been developed. Its reconstruction algorithm uses measured magnetic flux density induced by injected currents. The MREIT technique has the potential to visualize electrical conductivity of tissue with high spatial resolution and measure relative conductivity variation according to the internal temperature change based on the fact that the electrical conductivity of biological tissues is sensitive to the internal temperature distribution. In this paper, we propose a method to provide a non-invasive alternative to monitor the internal temperature distribution by recovering the electrical conductivity distribution using the MREIT technique. To validate the proposed method, we design a phantom with saline solution and a thin transparency film in a form of a hollow cylinder with holes to create anomalies with different electrical and thermal conductivities controlled by morphological structure. We first prove the temperature maps with respect to spatial and time resolution by solving the thermal conductivity partial differential equation with the real phantom experimental environment. The measured magnetic flux density and the reconstructed conductivity distributions using the phantom experiments were compared to the simulated temperature distribution. The relative temperature variation of two testing objects with respect to the background saline was determined by the relative conductivity contrast ratio (rCCR,%). The relation between the temperature and conductivity measurements using MREIT was approximately linear with better accuracy than 0.22 °C.

Morphometric analysis of Martian valley network basins using a circularity function

NASA Astrophysics Data System (ADS)

Luo, Wei; Howard, Alan D.

2005-12-01

This paper employs a circularity function to quantify the internal morphology of Martian watershed basins in Margaritifer Sinus region and to infer the primary erosional processes that led to their current geomorphologic characteristics and possible climatic conditions under which these processes operated. The circularity function describes the elongation of a watershed basin at different elevations. We have used the circularity functions of terrestrial basins that were interpreted as having been modified by (1) erosion related to primarily groundwater sapping and (2) erosion related to primarily rainfall and surface run-off, as well as the circularity functions of cratering basins on the Moon, in order to formulate discriminant functions that are able to separate the three types of landforms. The spatial pattern of the classification of Martian basins based on discriminant functions shows that basins that look morphologically similar to terrestrial fluvial basins are mostly clustered near the mainstream at low elevation, while those that look morphologically similar to terrestrial basins interpreted as groundwater sapping origin are located near the tributaries and at higher elevation. There are more of the latter than the former. This spatial distribution is inconsistent with a continuous Earth-like warm and wet climate for early Mars. Instead, it is more aligned with an overall early dry climate punctuated with episodic wet periods. Alternatively, the concentrated erosion in the mainstream could also be caused by a change of water source from rainfall to snowfall or erosion cut through a duricrust layer.

Effects of the New Madrid earthquake series in the Mississippi Alluvial Valley. Final report

DOE Office of Scientific and Technical Information (OSTI.GOV)

Saucier, R.T.

1977-02-01

Geological effects of the New Madrid earthquake series of 1811-12 in the upper portion of the Lower Mississippi Valley include land subsidence, uplift or doming, landslides, bank caving, fissuring, and sand blow phenomena. Features resulting from the liquefaction of sand are widespread in the alluvial valley and offer the greatest potential for definitively assessing the effects of major earthquakes on thick alluvial deposits and predicting the recurrence interval of infrequent major earthquakes in the region. However, liquefaction phenomena have not been the subject of detailed geological investigations applying knowledge of alluvial morphology and earth sciences methodology. Comparative aerial photo interpretationmore » has been used to classify liquefaction phenomena according to morphology, distribution, and relationship to major depositional environments. Surface morphology and spatial distribution of sand blows and fissures indicate basic control by drainage lines, water table position, and thickness of fine-grained topstratum deposits, Research efforts have been aimed at locating field test sites where the subsurface expression of the liquefaction phenomena can be investigated through trenching and land planing. Subsurface expression is presumed to be more permanent than surface expression and may permit the recognition of such features in older formations. Evidence of fissures and related phenomena is being sought in older Quaternary deposits to permit estimates of the frequency of past major earthquakes.« less

Graphene Oxide as a Novel Evenly Continuous Phase Matrix for TOF-SIMS.

PubMed

Cai, Lesi; Sheng, Linfeng; Xia, Mengchan; Li, Zhanping; Zhang, Sichun; Zhang, Xinrong; Chen, Hongyuan

2017-03-01

Using matrix to enhance the molecular ion signals for biomolecule identification without loss of spatial resolution caused by matrix crystallization is a great challenge for the application of TOF-SIMS in real-world biological research. In this report, graphene oxide (GO) was used as a matrix for TOF-SIMS to improve the secondary ion yields of intact molecular ions ([M + H] + ). Identifying and distinguishing the molecular ions of lipids (m/z >700) therefore became straightforward. The spatial resolution of TOF-SIMS imaging could also be improved as GO can form a homogeneous layer of matrix instead of crystalline domain, which prevents high spatial resolution in TOF-SIMS imaging. Lipid mapping in presence of GO revealed the delicate morphology and distribution of single vesicles with a diameter of 800 nm. On GO matrix, the vesicles with similar shape but different chemical composition could be distinguished using molecular ions. This novel matrix holds potentials in such applications as the analysis and imaging of complex biological samples by TOF-SIMS. Graphical Abstract ᅟ.

Graphene Oxide as a Novel Evenly Continuous Phase Matrix for TOF-SIMS

NASA Astrophysics Data System (ADS)

Cai, Lesi; Sheng, Linfeng; Xia, Mengchan; Li, Zhanping; Zhang, Sichun; Zhang, Xinrong; Chen, Hongyuan

2017-03-01

Using matrix to enhance the molecular ion signals for biomolecule identification without loss of spatial resolution caused by matrix crystallization is a great challenge for the application of TOF-SIMS in real-world biological research. In this report, graphene oxide (GO) was used as a matrix for TOF-SIMS to improve the secondary ion yields of intact molecular ions ([M + H]+). Identifying and distinguishing the molecular ions of lipids ( m/z >700) therefore became straightforward. The spatial resolution of TOF-SIMS imaging could also be improved as GO can form a homogeneous layer of matrix instead of crystalline domain, which prevents high spatial resolution in TOF-SIMS imaging. Lipid mapping in presence of GO revealed the delicate morphology and distribution of single vesicles with a diameter of 800 nm. On GO matrix, the vesicles with similar shape but different chemical composition could be distinguished using molecular ions. This novel matrix holds potentials in such applications as the analysis and imaging of complex biological samples by TOF-SIMS.

Albedo estimation using near infrared photography at Glaciar Norte of Citlaltepetl Volcano (Mexico).

NASA Astrophysics Data System (ADS)

Ontiveros, Guillermo; Delgado-Granados, Hugo

2015-04-01

In this work we show preliminary results of the application of the methodology proposed by Corripio (2004) for albedo estimation of a glacial surface using oblique photography. This analysis was performed for the Glaciar Norte of Citlaltepetl volcano (Mexico), using images obtained with a modified digital camera for capturing the portion of the near infrared spectrum starting at 950 nm and a digital elevation model with a grid of 2 m. The main goal was to obtain a picture of the spatial distribution of albedo on the glacier, in order to find out if there was any morphological evidence of the influence of the glacier energy balance. Some of the obtained results show a certain spatial distribution with comparatively higher albedo values at the lower parts of the glacier as compared with higher parts. The higher values may correspond to different metamorphism of snow/ice at different heights due to the effects of lower slope. Corripio, J. G. (2004). Snow surface albedo estimation using terrestrial photography. International journal of remote sensing, 25(24), 5705-5729.

On the morphometry of terrestrial shield volcanoes

NASA Astrophysics Data System (ADS)

Grosse, Pablo; Kervyn, Matthieu

2016-04-01

Shield volcanoes are described as low angle edifices that have convex up topographic profiles and are built primarily by the accumulation of lava flows. This generic view of shields' morphology is based on a limited number of monogenetic shields from Iceland and Mexico, and a small set of large oceanic islands (Hawaii, Galapagos). Here, the morphometry of over 150 monogenetic and polygenetic shield volcanoes, identified inthe Global Volcanism Network database, are analysed quantitatively from 90-meter resolution DEMs using the MORVOLC algorithm. An additional set of 20 volcanoes identified as stratovolcanoes but having low slopes and being dominantly built up by accumulation of lava flows are documented for comparison. Results show that there is a large variation in shield size (volumes range from 0.1 to >1000 km3), profile shape (height/basal width ratios range from 0.01 to 0.1), flank slope gradients, elongation and summit truncation. Correlation and principal component analysis of the obtained quantitative database enables to identify 4 key morphometric descriptors: size, steepness, plan shape and truncation. Using these descriptors through clustering analysis, a new classification scheme is proposed. It highlights the control of the magma feeding system - either central, along a linear structure, or spatially diffuse - on the resulting shield volcano morphology. Genetic relationships and evolutionary trends between contrasted morphological end-members can be highlighted within this new scheme. Additional findings are that the Galapagos-type morphology with a central deep caldera and steep upper flanks are characteristic of other shields. A series of large oceanic shields have slopes systematically much steeper than the low gradients (<4-8°) generally attributed to large Hawaiian-type shields. Finally, the continuum of morphologies from flat shields to steeper complex volcanic constructs considered as stratovolcanoes calls for a revision of this oversimplified distinction, taking into account the lava/pyroclasts ratio and the spatial distribution of eruptive vents.

Flow Classification and Cave Discharge Characteristics in Unsaturated Karst Formation

NASA Astrophysics Data System (ADS)

Mariethoz, G.; Mahmud, K.; Baker, A.; Treble, P. C.

2015-12-01

In this study we utilize the spatial array of automated cave drip monitoring in two large chambers of the Golgotha Cave, SW Australia, developed in Quaternary aeolianite (dune limestone), with the aim of understanding infiltration water movement via the relationships between infiltration, stalactite morphology and groundwater recharge. Mahmud et al. (2015) used the Terrestrial LiDAR measurements to analyze stalactite morphology and to characterize possible flow locations in this cave. Here we identify the stalactites feeding the drip loggers and classify each as matrix (soda straw or icicle), fracture or combined-flow. These morphology-based classifications are compared with flow characteristics from the drip logger time series and the discharge from each stalactite is calculated. The total estimated discharge from each area is compared with infiltration estimates to better understand flow from the surface to the cave ceilings of the studied areas. The drip discharge data agrees with the morphology-based flow classification in terms of flow and geometrical characteristics of cave ceiling stalactites. No significant relationships were observed between the drip logger discharge, skewness and coefficient of variation with overburden thickness, due to the possibility of potential vadose-zone storage volume and increasing complexity of the karst architecture. However, these properties can be used to characterize different flow categories. A correlation matrix demonstrates that similar flow categories are positively correlated, implying significant influence of spatial distribution. The infiltration water comes from a larger surface area, suggesting that infiltration is being focused to the studied ceiling areas of each chamber. Most of the ceiling in the cave site is dry, suggesting the possibility of capillary effects with water moving around the cave rather than passing through it. Reference:Mahmud et al. (2015), Terrestrial Lidar Survey and Morphological Analysis to Identify Infiltration Properties in the Tamala Limestone, Western Australia, IEEE JSTARS, DOI: 10.1109/JSTARS.2015.2451088, in Press.

Influence of survey strategy and interpolation model on DEM quality

NASA Astrophysics Data System (ADS)

Heritage, George L.; Milan, David J.; Large, Andrew R. G.; Fuller, Ian C.

2009-11-01

Accurate characterisation of morphology is critical to many studies in the field of geomorphology, particularly those dealing with changes over time. Digital elevation models (DEMs) are commonly used to represent morphology in three dimensions. The quality of the DEM is largely a function of the accuracy of individual survey points, field survey strategy, and the method of interpolation. Recommendations concerning field survey strategy and appropriate methods of interpolation are currently lacking. Furthermore, the majority of studies to date consider error to be uniform across a surface. This study quantifies survey strategy and interpolation error for a gravel bar on the River Nent, Blagill, Cumbria, UK. Five sampling strategies were compared: (i) cross section; (ii) bar outline only; (iii) bar and chute outline; (iv) bar and chute outline with spot heights; and (v) aerial LiDAR equivalent, derived from degraded terrestrial laser scan (TLS) data. Digital Elevation Models were then produced using five different common interpolation algorithms. Each resultant DEM was differentiated from a terrestrial laser scan of the gravel bar surface in order to define the spatial distribution of vertical and volumetric error. Overall triangulation with linear interpolation (TIN) or point kriging appeared to provide the best interpolators for the bar surface. Lowest error on average was found for the simulated aerial LiDAR survey strategy, regardless of interpolation technique. However, comparably low errors were also found for the bar-chute-spot sampling strategy when TINs or point kriging was used as the interpolator. The magnitude of the errors between survey strategy exceeded those found between interpolation technique for a specific survey strategy. Strong relationships between local surface topographic variation (as defined by the standard deviation of vertical elevations in a 0.2-m diameter moving window), and DEM errors were also found, with much greater errors found at slope breaks such as bank edges. A series of curves are presented that demonstrate these relationships for each interpolation and survey strategy. The simulated aerial LiDAR data set displayed the lowest errors across the flatter surfaces; however, sharp slope breaks are better modelled by the morphologically based survey strategy. The curves presented have general application to spatially distributed data of river beds and may be applied to standard deviation grids to predict spatial error within a surface, depending upon sampling strategy and interpolation algorithm.

3D Tomography of Accretionary Lapilli From The Island of Stromboli (Aeolian Archipelago, Italy): Spatial Arrangement, Internal Structure, Grain Size Distribution and Chemical Characterization

NASA Astrophysics Data System (ADS)

Morgavi, D.; Ielpo, M.; Valentini, L.; Laeger, K.; Paredes, J.; Petrelli, M.; Costa, A.; Perugini, D.

2015-12-01

The Secche di Lazzaro formation (7 Ka) is a phreatomagmatic deposit in the south-western part of the island of Stromboli (Aeolian Archipelago, Italy). The volcanic sequence is constituted by three main sub-units. In two of them abundant accretionary lapilli are present. We performed granulometric analysis to describe the spatial arrangement and the grain-size distribution of the lapilli inside the deposit. Lapilli were characterized by SEM investigations (BSE images). EMPA and LA-ICP-MS analyses of major and trace elements on glasses and minerals were performed. Although BSE images provide accurate morphological information, they do not allow the real 3D microstructure to be accessed. Therefore, non-invasive 3D imaging of the lapilli was performed by X-ray micro-tomography (X-mCT). The results of the X-mCT measurements provided a set of 2D cross-sectional slices stacked along the vertical axis, with a voxel size varying between 2.7 and 4.1 mm, depending on the size of the sample. The X-mCT images represent a mapping of X-ray attenuation, which in turn depends on the density of the phases distributed within the sample. This technique helped us to better constrain the particle and crystal distribution inside the accretionary lapilli. The recognized phases are: glass, clinopyroxene, plagioclase and Ti-Fe minerals. We discover also a high concentration of Na, Cl and SO3 in the ash matrix. This evidence is ubiquitous in all the accretionary lapilli. The work presented here could define a new route for future studies in the field of physical volcanology as X-ray micro-tomography could be a useful, non destructive technique to better characterize the internal structure of accretionary lapilli helping us to describe grain-size distribution of component particles and their spatial distribution within aggregates.

Effects of electromagnetic radiation on spatial memory and synapses in rat hippocampal CA1☆

PubMed Central

Li, Yuhong; Shi, Changhua; Lu, Guobing; Xu, Qian; Liu, Shaochen

2012-01-01

In this study, we investigated the effects of mobile phone radiation on spatial learning, reference memory, and morphology in related brain regions. After the near-field radiation (0.52–1.08 W/kg) was delivered to 8-week-old Wistar rats 2 hours per day for 1 month, behavioral changes were examined using the Morris water maze. Compared with the sham-irradiated rats, the irradiated rats exhibited impaired performance. Morphological changes were investigated by examining synaptic ultrastructural changes in the hippocampus. Using the physical dissector technique, the number of pyramidal neurons, the synaptic profiles, and the length of postsynaptic densities in the CA1 region were quantified stereologically. The morphological changes included mitochondrial degenerations, fewer synapses, and shorter postsynaptic densities in the radiated rats. These findings indicate that mobile phone radiation can significantly impair spatial learning and reference memory and induce morphological changes in the hippocampal CA1 region. PMID:25709623

Comparison of the Cloud Morphology Spatial Structure Between Jupiter and Saturn Using JunoCam and Cassini ISS

NASA Astrophysics Data System (ADS)

Garland, Justin; Sayanagi, Kunio M.; Blalock, John J.; Gunnarson, Jacob; McCabe, Ryan M.; Gallego, Angelina; Hansen, Candice; Orton, Glenn S.

2017-10-01

We present an analysis of the spatial-scales contained in the cloud morphology of Jupiter’s southern high latitudes using images captured by JunoCam in 2016 and 2017, and compare them to those on Saturn using images captured using the Imaging Science Subsystem (ISS) on board the Cassini orbiter. For Jupiter, the characteristic spatial scale of cloud morphology as a function of latitude is calculated from images taken in three visual (600-800, 500-600, 420-520 nm) bands and a near-infrared (880- 900 nm) band. In particular, we analyze the transition from the banded structure characteristic of Jupiter’s mid-latitudes to the chaotic structure of the polar region. We apply similar analysis to Saturn using images captured using Cassini ISS. In contrast to Jupiter, Saturn maintains its zonally organized cloud morphology from low latitudes up to the poles, culminating in the cyclonic polar vortices centered at each of the poles. By quantifying the differences in the spatial scales contained in the cloud morphology, our analysis will shed light on the processes that control the banded structures on Jupiter and Saturn. Our work has been supported by the following grants: NASA PATM NNX14AK07G, NASA MUREP NNX15AQ03A, and NSF AAG 1212216.

Modelled drift patterns of fish larvae link coastal morphology to seabird colony distribution.

PubMed

Sandvik, Hanno; Barrett, Robert T; Erikstad, Kjell Einar; Myksvoll, Mari S; Vikebø, Frode; Yoccoz, Nigel G; Anker-Nilssen, Tycho; Lorentsen, Svein-Håkon; Reiertsen, Tone K; Skarðhamar, Jofrid; Skern-Mauritzen, Mette; Systad, Geir Helge

2016-05-13

Colonial breeding is an evolutionary puzzle, as the benefits of breeding in high densities are still not fully explained. Although the dynamics of existing colonies are increasingly understood, few studies have addressed the initial formation of colonies, and empirical tests are rare. Using a high-resolution larval drift model, we here document that the distribution of seabird colonies along the Norwegian coast can be explained by variations in the availability and predictability of fish larvae. The modelled variability in concentration of fish larvae is, in turn, predicted by the topography of the continental shelf and coastline. The advection of fish larvae along the coast translates small-scale topographic characteristics into a macroecological pattern, viz. the spatial distribution of top-predator breeding sites. Our findings provide empirical corroboration of the hypothesis that seabird colonies are founded in locations that minimize travel distances between breeding and foraging locations, thereby enabling optimal foraging by central-place foragers.

Development and relationship of monogenetic and polygenetic volcanic fields in time and space.

NASA Astrophysics Data System (ADS)

Germa, Aurelie; Connor, Chuck; Connor, Laura; Malservisi, Rocco

2013-04-01

The classification of volcanic systems, developed by G. P. L. Walker and colleagues, relates volcano morphology to magma transport and eruption processes. In general, distributed monogenetic volcanic fields are characterized by infrequent eruptions, low average output rate, and a low spatial intensity of the eruptive vents. In contrast, central-vent-dominated systems, such as stratovolcanoes, central volcanoes and lava shields are characterized by frequent eruptions, higher average flux rates, and higher spatial intensity of eruptive vents. However, it has been observed that a stratovolcano is often associated to parasitic monogenetic vents on its flanks, related to the central silicic systems, and surrounded by an apron of monogenetic edifices that are part of the volcanic field but independent from the principal central system. It appears from spatial distribution and time-volume relationships that surface area of monogenetic fields reflects the lateral extent of the magma source region and the lack of magma focusing mechanisms. In contrast, magma is focused through a unique conduit system for polygenetic volcanoes, provided by a thermally and mechanically favorable pathway toward the surface that is maintained by frequent and favorable stress conditions. We plan to relate surface observations of spatio-temporal location of eruptive vents and evolution of the field area through time to processes that control magma focusing during ascent and storage in the crust. We choose to study fields that range from dispersed to central-vent dominated, through transitional fields (central felsic system with peripheral field of monogenetic vents independent from the rhyolitic system). We investigate different well-studied volcanic fields in the Western US and Western Europe in order to assess influence of the geodynamic setting and tectonic stress on the spatial distribution of magmatism. In summary, incremental spatial intensity maps should reveal how fast a central conduit is created during the development of a volcanic field, and how this could influence the outbreak of dispersed monogenetic volcanoes that are not geochemically linked to the central system.

Sea Ice Pressure Ridge Height Distributions for the Arctic Ocean in Winter, Just Prior to Melt

NASA Astrophysics Data System (ADS)

Duncan, K.; Farrell, S. L.; Richter-Menge, J.; Hutchings, J.; Dominguez, R.; Connor, L. N.

2016-12-01

Pressure ridges are one of the most dominant morphological features of the Arctic sea ice pack. An impediment to navigation, pressure ridges are also of climatological interest since they impact the mass, energy and momentum transfer budgets for the Arctic Ocean. Understanding the regional and seasonal distributions of ridge sail heights, and their variability, is important for quantifying total sea ice mass, and for improved treatment of sea ice dynamics in high-resolution numerical models. Observations of sail heights from airborne and ship-based platforms have been documented in previous studies, however studies with both high spatial and temporal resolution, across multiple regions of the Arctic, are only recently possible with the advent of dedicated airborne surveys of the Arctic Ocean. In this study we present results from the high-resolution Digital Mapping System (DMS), flown as part of NASA's Operation IceBridge missions. We use DMS imagery to calculate ridge sail heights, derived from the shadows they cast combined with the solar elevation angle and the known pixel size of each image. Our analyses describe sea ice conditions at the end of winter, during the months of March and April, over a period spanning seven years, from 2010 to 2016. The high spatial resolution (0.1m) and temporal extent (seven years) of the DMS data set provides, for the first time, the full sail-height distributions of both first-year and multi-year sea ice. We present the inter-annual variability in sail height distributions for both the Central Arctic and the Beaufort and Chukchi Seas. We validate our results via comparison with spatially coincident high-resolution SAR imagery and airborne laser altimeter elevations.

A multi-frequency investigation of the influences of groundwater discharge on hydrocarbon emission and transport in the Baltic Sea

NASA Astrophysics Data System (ADS)

Weidner, E. F.; Jakobsson, M.; Nycander, J.; Mayer, L. A.

2017-12-01

In nearshore coastal regions submarine groundwater discharge is a major component of the hydro-geological cycle: transporting nutrients and pollutants to the ocean, producing up-welling currents through buoyancy effects, and acting as an erosional force at discharge sites. In nearshore regions where biogenic gas production is high, groundwater discharge could potentially act as a control on hydrocarbon emission and transport from the seafloor though the water-column. In the southern Stockholm Archipelago of the Baltic Sea, terraces and semi-circular depressions on shallow (<20 meters) seafloor have been linked to the discharge of ground water, traveling along the permeable layers in glacial clay deposits (Söderberg and Flodén 1995; Jakobsson et al., 2016). Sub-bottom profiles over the same region have identified widespread areas of subsurface blanking, commonly attributed to gas, as well as water-column seep features, both in spatial proximity to the groundwater discharge sites. High-resolution multibeam bathymetry and chirp sub-bottom profiles were combined with water-column data sets collected at multiple frequencies (300 kHz, 45-90 kHz, 160-260 kHz) to map the spatial distribution of seeps and investigate their relationship to localized groundwater discharge as determined by seafloor and subsurface morphology. The spatial extent of seep sites appears closely tied to regions of suspected groundwater discharge, suggesting direct or indirect controls on gas emission pathways. Additionally, seep morphology in the broadband data hints at the possibility of groundwater and gas flow mixing.

A remote sensing study of regional variation in sinkhole morphology-Florida karst vs. Minnesota karst

NASA Astrophysics Data System (ADS)

Ernst, C. L.; Hadizadeh, J.; McCarty, J. L.

2010-12-01

In many regions of the United States, database technologies and GIS have facilitated spatial analysis of karst. The purpose of this research was to compare regional latitudinal variation in sinkhole karst morphology via remote sensing techniques. Such comparison may be significant because the development of a karst landscape depends primarily on climate and availability of water as well as lithology. Sinkhole karst, a common karst in the U.S., is morphologically defined as cone-shaped depressions with circular or oval opening to the surface that result from the dissolution of relatively soluble bedrock such as limestone or gypsum. The two regions of interest, north-central Florida and southeastern Minnesota, were selected based on structural and lithological similarity of limestone bedrock and the fact that the bedrock study areas are located in clearly different climate zones. This approach utilized topographic maps, digital elevation models, state karst feature databases, and high resolution 0.6m QuickBirdTM and 0.5m WorldView 1TM satellite images in a GIS environment. Morphological parameters - area, perimeter, minor axis and major axis length - were calculated on a total of 80 sinkholes in the study regions using the zonal geometry function, a tool in the spatial analysis extension provided by ESRITM. Our results show that north-central Florida and southeastern Minnesota karst are statistically different in terms of sinkhole shape and size distribution. Florida has larger sinkholes (2,835 square meter Mean) that are closer to circular shape. Minnesota has smaller (1,213 square meter Mean) and more elliptical sinkholes with a comparatively shorter minor axis. Of the possible explanations, climate appears to be the most likely cause for the observed differences. The higher amount of precipitation in Florida coupled with warmer year round temperatures provides an environment conducive to a more chemically involved hydrological regime, which may be responsible for the greater average sinkhole size in Florida. The integration of high resolution satellite imagery was successfully implemented to delineate sinkhole features. There were several advantages to using QuickBirdTM and WorldView1TM satellite images such as easy integration into GIS, regional coverage and high spatial resolution.

Assessment of sediment sources throughout the proglacial area of a small Arctic catchment based on high-resolution digital elevation models

NASA Astrophysics Data System (ADS)

Kociuba, Waldemar

2017-06-01

The article presents calculations of quantitative modifications of the morphology of selected subsystems of a glacial valley through: (i) identification of the spatial distribution of important sources of sediment, (ii) assessment of the spatiotemporal variety of sediment volume and landform morphology, and (iii) assessment of the role of particular subsystems in sediment distribution. The study involved a comparison of the results of field measurements from 2010 to 2013 performed in the Scott Glacier catchment (10.1 km2) in NW Wedel Jarlsberg Land (Spitsbergen). The assessment of the landform surface changes was performed by means of a precise Terrestrial Laser Scanning (TLS) survey. The applied field and post-processing techniques for oblique laser scanning permitted the acquisition of digital elevation data at a resolution 0.01 m and density > 500 pt m- 2. This allowed the development of a detailed terrain model, and balancing spatial quantitative changes in six research test areas (10,000 m2) located within two subsystems of the catchment in a cascade arrangement. In the alluvial valley-floor subsystem, the survey covered: 1) the glacier terminus, 2) the intramarginal outwash plain, 3) the extramarginal braid-plain and 4) the alluvial fan, and in the slope subsystem: 5) the erosional-depositional slope in the gorge through terminal moraines, and 6) the solifluction slope. Three zones differing in terms of the spatiotemporal dynamics of geomorphic processes were distinguished within the two analysed valley subsystems. In the valley floor subsystem, these are: (i) the zone of basic supply (distribution throughout the melting season) and (ii) the redeposition zone (distribution particularly during floods), and in the slope subsystem: (iii) zone of periodical supply (distributed mainly in periods of increased precipitation and rapid increases in temperature in summer and during snow avalanches in winter). The glacier and the landforms of the channel and valley floor, as well as slope sediments transported as a result of mass wasting processes and activity of the active permafrost layer, constitute important sources of sediment supply over a short/3-year timescale. Evidence of major changes of the surface morphology (slopes, floodplain and channel platform) resulted in varied sediment budgets. The subtraction of consecutive DEMs of the test areas located in the alluvial valley subsystem revealed downstream spatial and volumetric differentiation, from the predominance of erosion (79% of volume; 43% of area) to the dominance of deposition (90/91%, respectively) in upper part of the valley floor to erosion predominance in the central (88/95%) and lower (87/82%) part of valley floor. The test areas located on the slope subsystem showed the opposite relationship: deposition dominance (88% of volume; 80% of area) in the upper gorge and erosion dominance (99/99%, respectively) in the lower part (solifluction slopes). The analysis of short-time repeated surveys (3-week survey) where volumes were calculated following DEM subtraction showed increased deposition (82% of volume; 79% of area) for the alluvial fan, and for solifluction slopes (70/57%, respectively).

Dissecting the actin cortex density and membrane-cortex distance in living cells by super-resolution microscopy

NASA Astrophysics Data System (ADS)

Clausen, M. P.; Colin-York, H.; Schneider, F.; Eggeling, C.; Fritzsche, M.

2017-02-01

Nanoscale spacing between the plasma membrane and the underlying cortical actin cytoskeleton profoundly modulates cellular morphology, mechanics, and function. Measuring this distance has been a key challenge in cell biology. Current methods for dissecting the nanoscale spacing either limit themselves to complex survey design using fixed samples or rely on diffraction-limited fluorescence imaging whose spatial resolution is insufficient to quantify distances on the nanoscale. Using dual-color super-resolution STED (stimulated-emission-depletion) microscopy, we here overcome this challenge and accurately measure the density distribution of the cortical actin cytoskeleton and the distance between the actin cortex and the membrane in live Jurkat T-cells. We found an asymmetric cortical actin density distribution with a mean width of 230 (+105/-125) nm. The spatial distances measured between the maximum density peaks of the cortex and the membrane were bi-modally distributed with mean values of 50  ±  15 nm and 120  ±  40 nm, respectively. Taken together with the finite width of the cortex, our results suggest that in some regions the cortical actin is closer than 10 nm to the membrane and a maximum of 20 nm in others.

Throughfall and its spatial variability beneath xerophytic shrub canopies within water-limited arid desert ecosystems

NASA Astrophysics Data System (ADS)

Zhang, Ya-feng; Wang, Xin-ping; Hu, Rui; Pan, Yan-xia

2016-08-01

Throughfall is known to be a critical component of the hydrological and biogeochemical cycles of forested ecosystems with inherently temporal and spatial variability. Yet little is understood concerning the throughfall variability of shrubs and the associated controlling factors in arid desert ecosystems. Here we systematically investigated the variability of throughfall of two morphological distinct xerophytic shrubs (Caragana korshinskii and Artemisia ordosica) within a re-vegetated arid desert ecosystem, and evaluated the effects of shrub structure and rainfall characteristics on throughfall based on heavily gauged throughfall measurements at the event scale. We found that morphological differences were not sufficient to generate significant difference (P < 0.05) in throughfall between two studied shrub species under the same rainfall and meteorological conditions in our study area, with a throughfall percentage of 69.7% for C. korshinskii and 64.3% for A. ordosica. We also observed a highly variable patchy pattern of throughfall beneath individual shrub canopies, but the spatial patterns appeared to be stable among rainfall events based on time stability analysis. Throughfall linearly increased with the increasing distance from the shrub base for both shrubs, and radial direction beneath shrub canopies had a pronounced impact on throughfall. Throughfall variability, expressed as the coefficient of variation (CV) of throughfall, tended to decline with the increase in rainfall amount, intensity and duration, and stabilized passing a certain threshold. Our findings highlight the great variability of throughfall beneath the canopies of xerophytic shrubs and the time stability of throughfall pattern among rainfall events. The spatially heterogeneous and temporally stable throughfall is expected to generate a dynamic patchy distribution of soil moisture beneath shrub canopies within arid desert ecosystems.

Which Factors Determine Spatial Segregation in the South American Opossums (Didelphis aurita and D. albiventris)? An Ecological Niche Modelling and Geometric Morphometrics Approach

PubMed Central

Cáceres, Nilton Carlos; de Moraes Weber, Marcelo; Melo, Geruza Leal; Meloro, Carlo; Sponchiado, Jonas; Carvalho, Renan dos Santos; Bubadué, Jamile de Moura

2016-01-01

Didelphis albiventris and D. aurita are Neotropical marsupials that share a unique evolutionary history and both are largely distributed throughout South America, being primarily allopatric throughout their ranges. In the Araucaria moist forest of Southern Brazil these species are sympatric and they might potentially compete having similar ecology. For this reason, they are ideal biological models to address questions about ecological character displacement and how closely related species might share their geographic space. Little is known about how two morphologically similar species of marsupials may affect each other through competition, if by competitive exclusion and competitive release. We combined ecological niche modeling and geometric morphometrics to explore the possible effects of competition on their distributional ranges and skull morphology. Ecological niche modeling was used to predict their potential distribution and this method enabled us to identify a case of biotic exclusion where the habit generalist D. albiventris is excluded by the presence of the specialist D. aurita. The morphometric analyses show that a degree of shape discrimination occurs between the species, strengthened by allometric differences, which possibly allowed them to occupy marginally different feeding niches supplemented by behavioral shift in contact areas. Overlap in skull morphology is shown between sympatric and allopatric specimens and a significant, but weak, shift in shape occurs only in D. aurita in sympatric areas. This could be a residual evidence of a higher past competition between both species, when contact zones were possibly larger than today. Therefore, the specialist D. aurita acts a biotic barrier to D. albiventris when niche diversity is not available for coexistence. On the other hand, when there is niche diversification (e.g. habitat mosaic), both species are capable to coexist with a minimal competitive effect on the morphology of D. aurita. PMID:27336371

Spatio-Temporal Pattern Analysis for Regional Climate Change Using Mathematical Morphology

NASA Astrophysics Data System (ADS)

Das, M.; Ghosh, S. K.

2015-07-01

Of late, significant changes in climate with their grave consequences have posed great challenges on humankind. Thus, the detection and assessment of climatic changes on a regional scale is gaining importance, since it helps to adopt adequate mitigation and adaptation measures. In this paper, we have presented a novel approach for detecting spatio-temporal pattern of regional climate change by exploiting the theory of mathematical morphology. At first, the various climatic zones in the region have been identified by using multifractal cross-correlation analysis (MF-DXA) of different climate variables of interest. Then, the directional granulometry with four different structuring elements has been studied to detect the temporal changes in spatial distribution of the identified climatic zones in the region and further insights have been drawn with respect to morphological uncertainty index and Hurst exponent. The approach has been evaluated with the daily time series data of land surface temperature (LST) and precipitation rate, collected from Microsoft Research - Fetch Climate Explorer, to analyze the spatio-temporal climatic pattern-change in the Eastern and North-Eastern regions of India throughout four quarters of the 20th century.

Influence of urban morphology on total noise pollution: multifractal description.

PubMed

Ariza-Villaverde, Ana B; Jiménez-Hornero, Francisco J; Gutiérrez De Ravé, Eduardo

2014-02-15

Exposure to ambient noise levels above 65 dB can cause public health problems. The spatial distribution of this kind of pollution is linked to various elements which make up the urban form, such as construction density, the existence of open spaces and the shape and physical position of buildings. Since urban morphology displays multifractal behaviour, the present research studies for the first time the relationship between total noise pollution and urban features, such as street width and building height by means of a joint multifractal spectrum in two neighbourhoods of the city of Cordoba (Andalusia, Spain). According to the results, the joint multifractal spectrum reveals a positive correlation between the total noise pollution and the street width to building height ratio, this being more evident when urban morphology is regular. The information provided by the multifractal analysis completes the description obtained by using urban indexes and landscape metrics and might be useful for urban planning once the linkage between both frameworks has been done. Copyright © 2013 Elsevier B.V. All rights reserved.

Investigation of Iron Oxide Morphology in a Cyclic Redox Water Splitting Process for Hydrogen Generation

PubMed Central

Bobek, Michael M.; Stehle, Richard C.; Hahn, David W.

2012-01-01

A solar fuels generation research program is focused on hydrogen production by means of reactive metal water splitting in a cyclic iron-based redox process. Iron-based oxides are explored as an intermediary reactive material to dissociate water molecules at significantly reduced thermal energies. With a goal of studying the resulting oxide chemistry and morphology, chemical assistance via CO is used to complete the redox cycle. In order to exploit the unique characteristics of highly reactive materials at the solar reactor scale, a monolithic laboratory scale reactor has been designed to explore the redox cycle at temperatures ranging from 675 to 875 K. Using high resolution scanning electron microscope (SEM) and electron dispersive X-ray spectroscopy (EDS), the oxide morphology and the oxide state are quantified, including spatial distributions. These images show the change of the oxide layers directly after oxidation and after reduction. The findings show a significant non-stoichiometric O/Fe gradient in the atomic ratio following oxidation, which is consistent with a previous kinetics model, and a relatively constant, non-stoichiometric O/Fe atomic ratio following reduction.

Landscape patterns from mathematical morphology on maps with contagion

Treesearch

Kurt Riitters; Peter Vogt; Pierre Soille; Christine Estreguil

2009-01-01

The perceived realism of simulated maps with contagion (spatial autocorrelation) has led to their use for comparing landscape pattern metrics and as habitat maps for modeling organism movement across landscapes. The objective of this study was to conduct a neutral model analysis of pattern metrics defined by morphological spatial pattern analysis (MSPA) on maps with...

Star Formation in Undergraduate ALFALFA Team Galaxy Groups and Clusters

NASA Astrophysics Data System (ADS)

Koopmann, Rebecca A.; Durbala, Adriana; Finn, Rose; Haynes, Martha P.; Coble, Kimberly A.; Craig, David W.; Hoffman, G. Lyle; Miller, Brendan P.; Crone-Odekon, Mary; O'Donoghue, Aileen A.; Troischt, Parker; Undergraduate ALFALFA Team; ALFALFA Team

2017-01-01

The Undergraduate ALFALFA Team (UAT) Groups project is a coordinated study of gas and star formation properties of galaxies in and around 36 nearby (z<0.03) groups and clusters of varied richness, morphological type mix, and X-ray luminosity. By studying a large range of environments and considering the spatial distributions of star formation, we probe mechanisms of gas depletion and morphological transformation. The project uses ALFALFA HI observations, optical observations, and digital databases like SDSS, and incorporates work undertaken by faculty and students at different institutions within the UAT. Here we present results from our wide area Hα and broadband R imaging project carried out with the WIYN 0.9m+MOSAIC/HDI at KPNO, including an analysis of radial star formation rates and extents of galaxies in the NGC 5846, Abell 779, NRGb331, and HCG 69 groups/clusters. This work has been supported by NSF grant AST-1211005 and AST-1637339.

Compaction of quasi-one-dimensional elastoplastic materials

PubMed Central

Shaebani, M. Reza; Najafi, Javad; Farnudi, Ali; Bonn, Daniel; Habibi, Mehdi

2017-01-01

Insight into crumpling or compaction of one-dimensional objects is important for understanding biopolymer packaging and designing innovative technological devices. By compacting various types of wires in rigid confinements and characterizing the morphology of the resulting crumpled structures, here, we report how friction, plasticity and torsion enhance disorder, leading to a transition from coiled to folded morphologies. In the latter case, where folding dominates the crumpling process, we find that reducing the relative wire thickness counter-intuitively causes the maximum packing density to decrease. The segment size distribution gradually becomes more asymmetric during compaction, reflecting an increase of spatial correlations. We introduce a self-avoiding random walk model and verify that the cumulative injected wire length follows a universal dependence on segment size, allowing for the prediction of the efficiency of compaction as a function of material properties, container size and injection force. PMID:28585550

The Lakes and Seas of Titan

NASA Astrophysics Data System (ADS)

Hayes, Alexander G.

2016-06-01

Analogous to Earth's water cycle, Titan's methane-based hydrologic cycle supports standing bodies of liquid and drives processes that result in common morphologic features including dunes, channels, lakes, and seas. Like lakes on Earth and early Mars, Titan's lakes and seas preserve a record of its climate and surface evolution. Unlike on Earth, the volume of liquid exposed on Titan's surface is only a small fraction of the atmospheric reservoir. The volume and bulk composition of the seas can constrain the age and nature of atmospheric methane, as well as its interaction with surface reservoirs. Similarly, the morphology of lacustrine basins chronicles the history of the polar landscape over multiple temporal and spatial scales. The distribution of trace species, such as noble gases and higher-order hydrocarbons and nitriles, can address Titan's origin and the potential for both prebiotic and biotic processes. Accordingly, Titan's lakes and seas represent a compelling target for exploration.

Investigation on the Yarn Squeezing Effect of Three Dimensional Full Five Directional Braided Composites

NASA Astrophysics Data System (ADS)

Hu, Long; Tao, Guoquan; Liu, Zhenguo; Wang, Yibo; Ya, Jixuan

2018-04-01

The influence of yarn squeezing effect on the geometric morphology and mechanical property of the three dimensional full five directional (3DF5D) braided composites is explored. Spatial path and cross-section shape of the yarns in the braided structure are characterized based on the micro computed tomography (micro CT) scanning images. The yarn distortion due to the squeezing effect is discussed and mathematical morphology of the yarn geometry is established. A new repeated unit cell (RUC) model of 3DF5D braided composites considering yarn squeezing effect is developed. Based on this model, mechanical properties of 3DF5D braided composites are analyzed. Good agreement is obtained between the predicted and experiment results. Moreover, the stress distribution of the new RUC model are compared with original RUC model, showing that the squeezing effect significantly increases the stress concentration level of the axial yarns.

Heterogeneity in the distribution of genetically modified and conventional oilseed rape within fields and seed lots.

PubMed

Begg, Graham S; Elliott, Martin J; Cullen, Danny W; Iannetta, Pietro P M; Squire, Geoff R

2008-10-01

The implementation of co-existence in the commercialisation of GM crops requires GM and non-GM products to be segregated in production and supply. However, maintaining segregation in oilseed rape will be made difficult by the highly persistent nature of this species. An understanding of its population dynamics is needed to predict persistence and develop potential strategies for control, while to ensure segregation is being achieved, the production of GM oilseed rape must be accompanied by the monitoring of GM levels in crop or seed populations. Heterogeneity in the spatial distribution of oilseed rape has the potential to affect both control and monitoring and, although a universal phenomenon in arable weeds and harvested seed lots, spatial heterogeneity in oilseed rape populations remains to be demonstrated and quantified. Here we investigate the distribution of crop and volunteer populations in a commercial field before and during the cultivation of the first conventional oilseed rape (winter) crop since the cultivation of a GM glufosinate-tolerant oilseed rape crop (spring) three years previously. GM presence was detected by ELISA for the PAT protein in each of three morphologically distinguishable phenotypes: autumn germinating crop-type plants (3% GM), autumn-germinating 'regrowths' (72% GM) and spring germinating 'small-type' plants (17% GM). Statistical models (Poisson log-normal and binomial logit-normal) were used to describe the spatial distribution of these populations at multiple spatial scales in the field and of GM presence in the harvested seed lot. Heterogeneity was a consistent feature in the distribution of GM and conventional oilseed rape. Large trends across the field (50 x 400 m) and seed lot (4 x 1.5 x 1.5 m) were observed in addition to small-scale heterogeneity, less than 20 m in the field and 20 cm in the seed lot. The heterogeneity was greater for the 'regrowth' and 'small' phenotypes, which were likely to be volunteers and included most of the GM plants detected, than for the largely non-GM 'crop' phenotype. The implications of the volunteer heterogeneity for field management and GM-sampling are discussed.

Impact craters on Venus: An overview from Magellan observations

NASA Technical Reports Server (NTRS)

Schaber, G. G.; Strom, R. G.; Moore, H. J.; Soderblom, L. A.; Kirk, R. L.; Chadwick, D. J.; Dawson, D. D.; Gaddis, L. R.; Boyce, J. M.; Russell, J.

1992-01-01

Magellan has revealed an ensemble of impact craters on Venus that is unique in many important ways. We have compiled a database describing 842 craters on 89 percent of the planet's surface mapped through orbit 2578 (the craters range in diameter from 1.5 to 280 km). We have studied the distribution, size-frequency, morphology, and geology of these craters both in aggregate and, for some craters, in more detail. We have found the following: (1) the spatial distribution of craters is highly uniform; (2) the size-density distribution of craters with diameters greater than or equal to 35 km is consistent with a 'production' population having a surprisingly young age of about 0.5 Ga (based on the estimated population of Venus-crossing asteroids); (3) the spectrum of crater modification differs greatly from that on other planets--62 percent of all craters are pristine, only 4 percent volcanically embayed, and the remainder affected by tectonism, but none are severely and progressively depleted based on size-density distribution extrapolated from larger craters; (4) large craters have a progression of morphologies generally similar to those on other planets, but small craters are typically irregular or multiple rather than bowl shaped; (5) diffuse radar-bright or -dark features surround some craters, and about 370 similar diffuse 'splotches' with no central crater are observed whose size-density distribution is similar to that of small craters; and (6) other features unique to Venus include radar-bright or -dark parabolic arcs opening westward and extensive outflows originating in crater ejecta.

Core-Shell Magnetic Morphology of Structurally Uniform Magnetite Nanoparticles

NASA Astrophysics Data System (ADS)

Krycka, K. L.; Booth, R. A.; Hogg, C. R.; Ijiri, Y.; Borchers, J. A.; Chen, W. C.; Watson, S. M.; Laver, M.; Gentile, T. R.; Dedon, L. R.; Harris, S.; Rhyne, J. J.; Majetich, S. A.

2010-05-01

A new development in small-angle neutron scattering with polarization analysis allows us to directly extract the average spatial distributions of magnetic moments and their correlations with three-dimensional directional sensitivity in any magnetic field. Applied to a collection of spherical magnetite nanoparticles 9.0 nm in diameter, this enhanced method reveals uniformly canted, magnetically active shells in a nominally saturating field of 1.2 T. The shell thickness depends on temperature, and it disappears altogether when the external field is removed, confirming that these canted nanoparticle shells are magnetic, rather than structural, in origin.

Regioregular narrow-bandgap-conjugated polymers for plastic electronics

NASA Astrophysics Data System (ADS)

Ying, Lei; Huang, Fei; Bazan, Guillermo C.

2017-03-01

Progress in the molecular design and processing protocols of semiconducting polymers has opened significant opportunities for the fabrication of low-cost plastic electronic devices. Recent studies indicate that field-effect transistors and organic solar cells fabricated using narrow-bandgap regioregular polymers with translational symmetries in the direction of the backbone vector often outperform those containing analogous regiorandom polymers. This review addresses the cutting edge of regioregularity chemistry, in particular how to control the spatial distribution in the molecular structures and how this order translates to more ordered bulk morphologies. The effect of regioregularity on charge transport and photovoltaic properties is also outlined.

Global morphological analysis of marine viruses shows minimal regional variation and dominance of non-tailed viruses.

PubMed

Brum, Jennifer R; Schenck, Ryan O; Sullivan, Matthew B

2013-09-01

Viruses influence oceanic ecosystems by causing mortality of microorganisms, altering nutrient and organic matter flux via lysis and auxiliary metabolic gene expression and changing the trajectory of microbial evolution through horizontal gene transfer. Limited host range and differing genetic potential of individual virus types mean that investigations into the types of viruses that exist in the ocean and their spatial distribution throughout the world's oceans are critical to understanding the global impacts of marine viruses. Here we evaluate viral morphological characteristics (morphotype, capsid diameter and tail length) using a quantitative transmission electron microscopy (qTEM) method across six of the world's oceans and seas sampled through the Tara Oceans Expedition. Extensive experimental validation of the qTEM method shows that neither sample preservation nor preparation significantly alters natural viral morphological characteristics. The global sampling analysis demonstrated that morphological characteristics did not vary consistently with depth (surface versus deep chlorophyll maximum waters) or oceanic region. Instead, temperature, salinity and oxygen concentration, but not chlorophyll a concentration, were more explanatory in evaluating differences in viral assemblage morphological characteristics. Surprisingly, given that the majority of cultivated bacterial viruses are tailed, non-tailed viruses appear to numerically dominate the upper oceans as they comprised 51-92% of the viral particles observed. Together, these results document global marine viral morphological characteristics, show that their minimal variability is more explained by environmental conditions than geography and suggest that non-tailed viruses might represent the most ecologically important targets for future research.

Gas exsolution and bubbles nucleation from the 1669 lava flow of Mount Etna (Italy): evidences from phase-contrast synchrotron X-ray microtomography

NASA Astrophysics Data System (ADS)

Lanzafame, Gabriele; Ferlito, Carmelo; Mancini, Lucia

2017-04-01

Bubbles are usually present in lavas, often showing an increase in their size and number from bottom to the top of vertical profile of the flows. Their presence is commonly interpreted as the final phase of the degassing processes starting and massively occurring at depth, before the eruption. In this work we present the results of a detailed study of size, shape and volumetric distribution of bubbles in lavas from the 1669 eruption of Mount Etna (Italy), one of the most voluminous and destructive historic events of this volcano. The lava field produced during this event extends up to 18 km from the craters, and the massive presence of bubbles in lavas sampled many kilometres away from the emission point is in contrast with the models predicting their almost total exsolution from the magma before the eruption, at depth of several kilometres beneath the volcano edifice. Sampling of the 1669 lava field has been performed along the longitudinal profile of the field at increasing distance from the vent. Collected rocks have been analysed by X-ray fluorescence and phase-contrast synchrotron X-ray computed microtomography in order to extract three-dimensional (3D) qualitative and quantitative information on the bubbles network. The use of synchrotron light permitted to investigate small portions of the samples at high spatial and contrast resolution and allowed us to obtain the 3D morphology and distribution of the micro-bubbles present in the lava, avoiding the limitations of the traditional two-dimensional analysis on thin sections. Results indicate that bubbles in lavas are present in various abundance, constituting up to 18% of the rocks volume, and are randomly distributed, with no regards for the distance from the vent. Their casual abundance, morphological characteristics and spatial distribution indicate large nucleation from syn- to post-eruptive stage, during the lava flowing and probably after it halted its run. These observations are in contrast with the general view that considers the magma completely (or largely) degassed and the volcanic gas species (mostly H2O, CO2, SO2) as largely exsolved when magma reaches the surface. On the contrary, results indicate that the exsolution of bubble-forming volcanic gases can occur far from the emission vent and right before the complete solidification of the lava. Finally, this process could easily explain, for the case of 1669 eruption, the impressive fluidity of the lavas, which display pahoehoe morphology 16 km away from the emission vent.

Microstructural evolution and deformation behavior of Al-Cu alloys: A Transmission X-ray Microscopy (TXM) and micropillar compression study

DOE PAGES

Kaira, C. Shashank; Kantzos, Christopher; Williams, Jason J.; ...

2017-11-07

In this paper, a unique approach to correlating an evolving 3D microstructure in an Al-Cu alloy and its micro-scale mechanical properties has been introduced. Using these nanoscale three-dimensional microstructures derived from Transmission X-ray Microscopy (TXM), individual contributions from different strengthening mechanisms were quantified. The spatial distribution and morphology of the individual θ' and θ phases were seen to play an important role in influencing dislocation storage. Uniaxial micro-compression experiments were used to quantify the stress-strain response of the alloy at different aging times. Transmission electron microscopy (TEM) aided in discerning dislocation activity at these precipitates. A model is proposed tomore » accurately predict the variation in yield stress by using appropriate morphological parameters from the 3D microstructure and its validity has been corroborated using experimental measurements. Distributions of 2D and 3D inter-precipitate spacing were seen to provide crucial insights on influencing deformation in such precipitation-strengthened alloys. In conclusion, the transition in deformation behavior and origin of numerous strain bursts were investigated using in situ micropillar compression testing.« less

Linking CO 2 Sorption Performance to Polymer Morphology in Aminopolymer/Silica Composites through Neutron Scattering

DOE PAGES

Holewinski, Adam; Sakwa-Novak, Miles A.; Jones, Christopher W.

2015-08-26

Composites of poly(ethylenimine) (PEI) and mesoporous silica are effective, reversible adsorbents for CO 2, both from flue gas and in direct air-capture applications. The morphology of the PEI within the silica can strongly impact the overall carbon capture efficiency and rate of saturation. Here, we directly probe the spatial distribution of the supported polymer through small-angle neutron scattering (SANS). Combined with textural characterization from physisorption analysis, the data indicate that PEI first forms a thin conformal coating on the pore walls, but all additional polymer aggregates into plug(s) that grow along the pore axis. This model is consistent with observedmore » trends in amine-efficiency (CO 2/N binding ratio) and pore size distributions, and points to a trade-off between achieving high chemical accessibility of the amine binding sites, which are inaccessible when they strongly interact with the silica, and high accessibility for mass transport, which can be hampered by diffusion through PEI plugs. In conclusion, we illustrate this design principle by demonstrating higher CO 2 capacity and uptake rate for PEI supported in a hydrophobically modified silica, which exhibits repulsive interactions with the PEI, freeing up binding sites.« less

Biofilms in 3D porous media: Delineating the influence of the pore network geometry, flow and mass transfer on biofilm development.

PubMed

Carrel, Maxence; Morales, Verónica L; Beltran, Mario A; Derlon, Nicolas; Kaufmann, Rolf; Morgenroth, Eberhard; Holzner, Markus

2018-05-01

This study investigates the functional correspondence between porescale hydrodynamics, mass transfer, pore structure and biofilm morphology during progressive biofilm colonization of a porous medium. Hydrodynamics and the structure of both the porous medium and the biofilm are experimentally measured with 3D particle tracking velocimetry and micro X-ray Computed Tomography, respectively. The analysis focuses on data obtained in a clean porous medium after 36 h of biofilm growth. Registration of the particle tracking and X-ray data sets allows to delineate the interplay between porous medium geometry, hydrodynamic and mass transfer processes on the morphology of the developing biofilm. A local analysis revealed wide distributions of wall shear stresses and concentration boundary layer thicknesses. The spatial distribution of the biofilm patches uncovered that the wall shear stresses controlled the biofilm development. Neither external nor internal mass transfer limitations were noticeable in the considered system, consistent with the excess supply of nutrient and electron acceptors. The wall shear stress remained constant in the vicinity of the biofilm but increased substantially elsewhere. Copyright © 2018 Elsevier Ltd. All rights reserved.

Microstructural evolution and deformation behavior of Al-Cu alloys: A Transmission X-ray Microscopy (TXM) and micropillar compression study

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kaira, C. Shashank; Kantzos, Christopher; Williams, Jason J.

In this paper, a unique approach to correlating an evolving 3D microstructure in an Al-Cu alloy and its micro-scale mechanical properties has been introduced. Using these nanoscale three-dimensional microstructures derived from Transmission X-ray Microscopy (TXM), individual contributions from different strengthening mechanisms were quantified. The spatial distribution and morphology of the individual θ' and θ phases were seen to play an important role in influencing dislocation storage. Uniaxial micro-compression experiments were used to quantify the stress-strain response of the alloy at different aging times. Transmission electron microscopy (TEM) aided in discerning dislocation activity at these precipitates. A model is proposed tomore » accurately predict the variation in yield stress by using appropriate morphological parameters from the 3D microstructure and its validity has been corroborated using experimental measurements. Distributions of 2D and 3D inter-precipitate spacing were seen to provide crucial insights on influencing deformation in such precipitation-strengthened alloys. In conclusion, the transition in deformation behavior and origin of numerous strain bursts were investigated using in situ micropillar compression testing.« less

Using soil residence time to delineate spatial and temporal patterns of transient landscape response

NASA Astrophysics Data System (ADS)

Almond, Peter; Roering, Josh; Hales, T. C.

2007-09-01

On hillslopes the balance between soil transport and production determines local soil thickness and the age distribution of particles that comprise the soil (where age refers to the time elapsed since detachment from bedrock). The mean of this age distribution is defined as the residence time, and in a landscape with time-invariant topography (i.e., morphologic steady state), the spatial uniformity of soil production ensures that the residence time of soils is spatially invariant. Thus, given constant soil-forming factors, spatial variation of soil properties reflects differences in residence time driven by nonuniform soil production. Spatially extensive soil databases, which are often freely available in electronic form, provide a cheap and accessible means of analyzing patterns of soil residence time and quantifying landscape dynamics. Here we use a soil chronosequence to calibrate a chronofunction describing the reddening of soils in the Oregon Coast Range, which is then used to quantify the spatial distribution of soil residence time. In contrast to the popular conception that the Oregon Coast Range experiences uniform erosion, we observe systematic variations in soil residence time driven by stream capture, deep-seated landsliding, and lateral channel migration. Large, contiguous areas with short residence time soils (hue 10YR) occur west of the Siuslaw River-Long Tom Creek drainage divide, whereas soil patches with redder hues of 7.5YR or 5YR indicate longer residence times and transient landscape conditions. These zones of red soils (5YR) occur east of the Siuslaw-Long Tom divide, coinciding with low-gradient ridge and valley topography and deeply alluviated valleys resulting from drainage reversal in the Quaternary. Patches of red soils are also associated with deep-seated landslides at various locations in our study area. Our calculated soil residence times appear subject to overestimation resulting from limitations of the simple weathering index used here and chronofunction calibration uncertainties. Nonetheless, our soil residence time estimates appear accurate to within an order of magnitude and provide a useful constraint on landscape dynamics over geomorphic timescales.

Length scale hierarchy and spatiotemporal change of alluvial morphologies over the Selenga River delta, Russia

NASA Astrophysics Data System (ADS)

Dong, T. Y.; Nittrouer, J.; McElroy, B. J.; Ma, H.; Czapiga, M. J.; Il'icheva, E.; Pavlov, M.; Parker, G.

2017-12-01

The movement of water and sediment in natural channels creates various types of alluvial morphologies that span length scales from dunes to deltas. The behavior of these morphologies is controlled microscopically by hydrodynamic conditions and bed material size, and macroscopically by hydrologic and geological settings. Alluvial morphologies can be modeled as either diffusive or kinematic waves, in accordance with their respective boundary conditions. Recently, it has been shown that the difference between these two dynamic behaviors of alluvial morphologies can be characterized by the backwater number, which is a dimensionless value normalizing the length scale of a morphological feature to its local hydrodynamic condition. Application of the backwater number has proven useful for evaluating the size of morphologies, including deltas (e.g., by assessing the preferential avulsion location of a lobe), and for comparing bedform types across different fluvial systems. Yet two critical questions emerge when applying the backwater number: First, how do different types of alluvial morphologies compare within a single deltaic system, where there is a hydrodynamic transition from uniform to non-uniform flow? Second, how do different types of morphologies evolve temporally within a system as a function of changing water discharge? This study addresses these questions by compiling and analyzing field data from the Selenga River delta, Russia, which include measurements of flow velocity, channel geometry, bed material grain size, and channel slope, as well as length scales of various morphologies, including dunes, island bars, meanders, bifurcations, and delta lobes. Data analyses reveal that the length scale of morphologies decrease and the backwater number increases as flow transitions from uniform to non-uniform conditions progressing downstream. It is shown that the evaluated length scale hierarchy and planform distribution of different morphologies can be used to estimate slope, shear velocity and sediment flux within this depositional system. The findings from this research can be applied to evaluate spatially and temporally varying morphodynamic conditions, based on structures measured from both modern systems and ancient sedimentary records.

Spatial genetic and morphologic structure of wolves and coyotes in relation to environmental heterogeneity in a Canis hybrid zone.

PubMed

Benson, John F; Patterson, Brent R; Wheeldon, Tyler J

2012-12-01

Eastern wolves have hybridized extensively with coyotes and gray wolves and are listed as a 'species of special concern' in Canada. However, a distinct population of eastern wolves has been identified in Algonquin Provincial Park (APP) in Ontario. Previous studies of the diverse Canis hybrid zone adjacent to APP have not linked genetic analysis with field data to investigate genotype-specific morphology or determine how resident animals of different ancestry are distributed across the landscape in relation to heterogeneous environmental conditions. Accordingly, we studied resident wolves and coyotes in and adjacent to APP to identify distinct Canis types, clarify the extent of the APP eastern wolf population beyond the park boundaries and investigate fine-scale spatial genetic structure and landscape-genotype associations in the hybrid zone. We documented three genetically distinct Canis types within the APP region that also differed morphologically, corresponding to putative gray wolves, eastern wolves and coyotes. We also documented a substantial number of hybrid individuals (36%) that were admixed between 2 or 3 of the Canis types. Breeding eastern wolves were less common outside of APP, but occurred in some unprotected areas where they were sympatric with a diverse combination of coyotes, gray wolves and hybrids. We found significant spatial genetic structure and identified a steep cline extending west from APP where the dominant genotype shifted abruptly from eastern wolves to coyotes and hybrids. The genotypic pattern to the south and northwest was a more complex mosaic of alternating genotypes. We modelled genetic ancestry in response to prey availability and human disturbance and found that individuals with greater wolf ancestry occupied areas of higher moose density and fewer roads. Our results clarify the structure of the Canis hybrid zone adjacent to APP and provide unique insight into environmental conditions influencing hybridization dynamics between wolves and coyotes. © 2012 Blackwell Publishing Ltd.

The role of spatial and ontogenetic morphological variation in the expansion of the geographic range of the tropical brown alga, Turbinaria ornata.

PubMed

Stewart, Hannah L

2008-12-01

Like many reefs worldwide, reefs in French Polynesia are experiencing a shift from coral-dominated to algal-dominated systems. The macroalga Turbinaria ornata comprises the majority of the increasing algal biomass on the barrier reefs surrounding these islands, and its distribution is increasing throughout this region. Aspects of the ecomorphology of Turbinaria make it ideally suited to thrive under the physical conditions found across barrier reefs throughout French Polynesia. Spatial morphological variation allows Turbinaria to produce morphotypes that are suited either to the calm, unidirectional, slowly flowing water in the backreef or to the high-energy wave-driven flow of the forereef. Backreef plants are flexible and produce airbladders that make them buoyant, whereas forereef plants are not buoyant, but strong and stiff. Production of bladders and resulting buoyancy has been found to be a phenotypically plastic trait in response to movement of water and confers advantages to backreef plants and plays an important role in dispersal. Ontogenetic variation of buoyancy, material properties, and reproductive capacity is part of a dispersal strategy whereby fertile, buoyant fronds drift between oceanic islands and form new populations, thereby contributing to the recent expansion of range of T. ornata across French Polynesia.

Congruence between morphological and molecular markers inferred from the analysis of the intra-morphotype genetic diversity and the spatial structure of Oxalis tuberosa Mol.

PubMed

Pissard, Audrey; Arbizu, Carlos; Ghislain, Marc; Faux, Anne-Michèle; Paulet, Sébastien; Bertin, Pierre

2008-01-01

Oxalis tuberosa is an important crop cultivated in the highest Andean zones. A germplasm collection is maintained ex situ by CIP, which has developed a morphological markers system to classify the accessions into morphotypes, i.e. groups of morphologically identical accessions. However, their genetic uniformity is currently unknown. The ISSR technique was used in two experiments to determine the relationships between both morphological and molecular markers systems. The intra-morphotype genetic diversity, the spatial structures of the diversity and the congruence between both markers systems were determined. In the first experience, 44 accessions representing five morphotypes, clearly distinct from each other, were analyzed. At the molecular level, the accessions exactly clustered according to their morphotypes. However, a genetic variability was observed inside each morphotype. In the second experiment, 34 accessions gradually differing from each other on morphological base were analyzed. The morphological clustering showed no geographical structure. On the opposite, the molecular analysis showed that the genetic structure was slightly related to the collection site. The correlation between both markers systems was weak but significant. The lack of perfect congruence between morphological and molecular data suggests that the morphological system may be useful for the morphotypes management but is not appropriate to study the genetic structure of the oca. The spatial structure of the genetic diversity can be related to the evolution of the species and the discordance between the morphological and molecular structures may result from similar selection pressures at different places leading to similar forms with a different genetic background.

Virtual mission stage I: Implications of a spaceborne surface water mission

NASA Astrophysics Data System (ADS)

Clark, E. A.; Alsdorf, D. E.; Bates, P.; Wilson, M. D.; Lettenmaier, D. P.

2004-12-01

The interannual and interseasonal variability of the land surface water cycle depend on the distribution of surface water in lakes, wetlands, reservoirs, and river systems; however, measurements of hydrologic variables are sparsely distributed, even in industrialized nations. Moreover, the spatial extent and storage variations of lakes, reservoirs, and wetlands are poorly known. We are developing a virtual mission to demonstrate the feasibility of observing surface water extent and variations from a spaceborne platform. In the first stage of the virtual mission, on which we report here, surface water area and fluxes are emulated using simulation modeling over three continental scale river basins, including the Ohio River, the Amazon River and an Arctic river. The Variable Infiltration Capacity (VIC) macroscale hydrologic model is used to simulate evapotranspiration, soil moisture, snow accumulation and ablation, and runoff and streamflow over each basin at one-eighth degree resolution. The runoff from this model is routed using a linear transfer model to provide input to a much more detailed flow hydraulics model. The flow hydraulics model then routes runoff through various channel and floodplain morphologies at a 250 m spatial and 20 second temporal resolution over a 100 km by 500 km domain. This information is used to evaluate trade-offs between spatial and temporal resolutions of a hypothetical high resolution spaceborne altimeter by synthetically sampling the resultant model-predicted water surface elevations.

Magnetoacoustic Imaging of Electrical Conductivity of Biological Tissues at a Spatial Resolution Better than 2 mm

PubMed Central

Hu, Gang; He, Bin

2011-01-01

Magnetoacoustic tomography with magnetic induction (MAT-MI) is an emerging approach for noninvasively imaging electrical impedance properties of biological tissues. The MAT-MI imaging system measures ultrasound waves generated by the Lorentz force, having been induced by magnetic stimulation, which is related to the electrical conductivity distribution in tissue samples. MAT-MI promises to provide fine spatial resolution for biological tissue imaging as compared to ultrasound resolution. In the present study, we first estimated the imaging spatial resolution by calculating the full width at half maximum (FWHM) of the system point spread function (PSF). The actual spatial resolution of our MAT-MI system was experimentally determined to be 1.51 mm by a parallel-line-source phantom with Rayleigh criterion. Reconstructed images made from tissue-mimicking gel phantoms, as well as animal tissue samples, were consistent with the morphological structures of the samples. The electrical conductivity value of the samples was determined directly by a calibrated four-electrode system. It has been demonstrated that MAT-MI is able to image the electrical impedance properties of biological tissues with better than 2 mm spatial resolution. These results suggest the potential of MAT-MI for application to early detection of small-size diseased tissues (e.g. small breast cancer). PMID:21858111

Preliminary results on landslides triggered by the Mw 7.8 Kaikoura earthquake of 14 November 2016 in northeast South Island, New Zealand

NASA Astrophysics Data System (ADS)

Gorum, Tolga; Yildirim, Cengiz

2017-04-01

This study presents the first results on analysis of the landslides triggered by the Mw 7.8 Kaikoura earthquake that occurred on November 14, 2016 in the region between the Hikurangi subduction system of the North Island and the oblique collisional regime of the South Island (Alpine Fault). The earthquake ruptured several faults that expand into two different tectonic domains which are compose of the strike-slip Marlborough fault system and the compressional North Canterbury Fault Zone. Here we present the preliminary mapping results of the distribution of landslides triggered by the earthquake. An extensive landslide interpretation was carried out using sets of optical high resolution satellite images (e.g. Sentinel-2 and Göktürk-2) for both the pre- and post-earthquake situation. The landslides were identified and mapped as polygons using multi-temporal visual image interpretation based on satellite imagery and morphological elements of landslide diagnostic indicators. Nearly 8,500 individual landslides with different sizes and types were mapped. The distribution pattern of the mapped coseismic landslides shows that the slope failures are highly concentrated along the ruptured faults and side slopes of the structurally controlled major rivers such as Hapuku and Clarence Rivers that drain the northeastern slopes of the region. Our spatial analysis of landslide occurrences with ground acceleration, lithology, slope, topographic relief and surface deformation indicated extensive control of steep slope and high topographic relief on landslides with ground acceleration as the trigger. We show that spatial distribution of slope failures shows decreasing frequency away from the earthquake faults up to 25 km towards east, and abundance of landslides spatially coincides with the coseismic fault geometries and aftershock distributions. We conclude that combined effect of complex rupture dynamics and topography primarily control the distribution pattern of the landslides triggered by the Kaikoura Earthquake sequence.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pacold, J. I.; Altman, A. B.; Donald, S B

Materials of interest for nuclear forensic science are often highly heterogeneous, containing complex mixtures of actinide compounds in a wide variety of matrices. Scanning transmission X-ray microscopy (STXM) is ideally suited to study such materials, as it can be used to chemically image specimens by acquiring X-ray absorption near-edge spectroscopy (XANES) data with 25 nm spatial resolution. In particular, STXM in the soft X-ray synchrotron radiation regime (approximately 120 – 2000 eV) can collect spectroscopic information from the actinides and light elements in a single experiment. Thus, STXM combines the chemical sensitivity of X-ray absorption spectroscopy with high spatial resolutionmore » in a single non-destructive characterization method. This report describes the application of STXM to a broad range of nuclear materials. Where possible, the spectroscopic images obtained by STXM are compared with information derived from other analytical methods, and used to make inferences about the process history of each material. STXM measurements can yield information including the morphology of a sample, “elemental maps” showing the spatial distribution of major chemical constituents, and XANES spectra from localized regions of a sample, which may show spatial variations in chemical composition.« less

Investigating spatial variability of vertical water fluxes through the streambed in distinctive stream morphologies using temperature and head data

NASA Astrophysics Data System (ADS)

Wang, Liping; Jiang, Weiwei; Song, Jinxi; Dou, Xinyi; Guo, Hongtao; Xu, Shaofeng; Zhang, Guotao; Wen, Ming; Long, Yongqing; Li, Qi

2017-08-01

Investigating the interaction of groundwater and surface water is key to understanding the hyporheic processes. The vertical water fluxes through a streambed were determined using Darcian flux calculations and vertical sediment temperature profiles to assess the pattern and magnitude of groundwater/surface-water interaction in Beiluo River, China. Field measurements were taken in January 2015 at three different stream morphologies including a meander bend, an anabranching channel and a straight stream channel. Despite the differences of flux direction and magnitude, flux directions based on vertical temperature profiles are in good agreement with results from Darcian flux calculations at the anabranching channel, and the Kruskal-Wallis tests show no significant differences between the estimated upward fluxes based on the two methods at each site. Also, the upward fluxes based on the two methods show similar spatial distributions on the streambed, indicating (1) that higher water fluxes at the meander bend occur from the center of the channel towards the erosional bank, (2) that water fluxes at the anabranching channel are higher near the erosional bank and in the center of the channel, and (3) that in the straight channel, higher water fluxes appear from the center of the channel towards the depositional bank. It is noted that higher fluxes generally occur at certain locations with higher streambed vertical hydraulic conductivity ( K v) or where a higher vertical hydraulic gradient is observed. Moreover, differences of grain size, induced by stream morphology and contrasting erosional and depositional conditions, have significant effects on streambed K v and water fluxes.

Shape, colour plasticity, and habitat use indicate morph-specific camouflage strategies in a marine shrimp.

PubMed

Duarte, Rafael C; Stevens, Martin; Flores, Augusto A V

2016-10-18

Colour and shape polymorphisms are important features of many species and may allow individuals to exploit a wider array of habitats, including through behavioural differences among morphs. In addition, differences among individuals in behaviour and morphology may reflect different strategies, for example utilising different approaches to camouflage. Hippolyte obliquimanus is a small shrimp species inhabiting different shallow-water vegetated habitats. Populations comprise two main morphs: homogeneous shrimp of variable colour (H) and transparent individuals with coloured stripes (ST). These morphs follow different distribution patterns between their main algal habitats; the brown weed Sargassum furcatum and the pink-red weed Galaxaura marginata. In this study, we first investigated morph-specific colour change and habitat selection, as mechanisms underlying camouflage and spatial distribution patterns in nature. Then, we examined habitat fidelity, mobility, and morphological traits, further indicating patterns of habitat use. H shrimp are capable of changing colour in just a few days towards their algal background, achieving better concealment in the more marginal, and less preferred, red weed habitat. Furthermore, laboratory trials showed that habitat fidelity is higher for H shrimp, whereas swimming activity is higher for the ST morph, aligned to morphological evidence indicating these two morphs comprise a more benthic (H) and a more pelagic (ST) life-style, respectively. Results suggest that H shrimp utilise a camouflage strategy specialised to a limited number of backgrounds at any one time, whereas ST individuals comprise a phenotype with more generalist camouflage (transparency) linked to a more generalist background utilisation. The coexistence within a population of distinct morphotypes with apparently alternative strategies of habitat use and camouflage may reflect differential responses to substantial seasonal changes in macroalgal cover. Our findings also demonstrate how colour change, behaviour, morphology, and background use all interact in achieving camouflage.

Seed-Mediated Growth of Gold Nanocrystals: Changes to the Crystallinity or Morphology as Induced by the Treatment of Seeds with a Sulfur Species

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zheng, Yiqun; Luo, Ming; Tao, Jing

We report our observation of changes to the crystallinity or morphology during seed-mediated growth of Au nanocrystals. When single-crystal Au seeds with a spherical or rod-like shape were treated with a chemical species such as S₂O₃²⁻ ions, twin defects were developed during the growth process to generate multiply twinned nanostructures. X-ray photoelectron spectroscopy analysis indicated that the S₂O₃²⁻ ions were chemisorbed on the surfaces of the seeds during the treatment. The chemisorbed S₂O₃²⁻ ions somehow influenced the crystallization of Au atoms added onto the surface during a growth process, leading to the formation of twin defects. In contrast to themore » spherical and rod-like Au seeds, the single-crystal structure was retained to generate a concave morphology when single-crystal Au seeds with a cubic or octahedral shape were used for a similar treatment and then seed-mediated growth. The different outcomes are likely related to the difference in spatial distribution of S₂O₃²⁻ ions chemisorbed on the surface of a seed. This approach based on surface modification is potentially extendable to other noble metals for engineering the crystallinity and morphology of nanocrystals formed via seed-mediated growth.« less

Seed-Mediated Growth of Gold Nanocrystals: Changes to the Crystallinity or Morphology as Induced by the Treatment of Seeds with a Sulfur Species

DOE PAGES

Zheng, Yiqun; Luo, Ming; Tao, Jing; ...

2014-12-11

We report our observation of changes to the crystallinity or morphology during seed-mediated growth of Au nanocrystals. When single-crystal Au seeds with a spherical or rod-like shape were treated with a chemical species such as S₂O₃²⁻ ions, twin defects were developed during the growth process to generate multiply twinned nanostructures. X-ray photoelectron spectroscopy analysis indicated that the S₂O₃²⁻ ions were chemisorbed on the surfaces of the seeds during the treatment. The chemisorbed S₂O₃²⁻ ions somehow influenced the crystallization of Au atoms added onto the surface during a growth process, leading to the formation of twin defects. In contrast to themore » spherical and rod-like Au seeds, the single-crystal structure was retained to generate a concave morphology when single-crystal Au seeds with a cubic or octahedral shape were used for a similar treatment and then seed-mediated growth. The different outcomes are likely related to the difference in spatial distribution of S₂O₃²⁻ ions chemisorbed on the surface of a seed. This approach based on surface modification is potentially extendable to other noble metals for engineering the crystallinity and morphology of nanocrystals formed via seed-mediated growth.« less

Critical role of morphology on the dielectric constant of semicrystalline polyolefins

DOE Office of Scientific and Technical Information (OSTI.GOV)

Misra, Mayank; Kumar, Sanat K., E-mail: sk2794@columbia.edu; Mannodi-Kanakkithodi, Arun

2016-06-21

A particularly attractive method to predict the dielectric properties of materials is density functional theory (DFT). While this method is very popular, its large computational requirements allow practical treatments of unit cells with just a small number of atoms in an ordered array, i.e., in a crystalline morphology. By comparing DFT and Molecular Dynamics (MD) simulations on the same ordered arrays of functional polyolefins, we confirm that both methodologies yield identical estimates for the dipole moments and hence the ionic component of the dielectric storage modulus. Additionally, MD simulations of more realistic semi-crystalline morphologies yield estimates for this polar contributionmore » that are in good agreement with the limited experiments in this field. However, these predictions are up to 10 times larger than those for pure crystalline simulations. Here, we show that the constraints provided by the surrounding chains significantly impede dipolar relaxations in the crystalline regions, whereas amorphous chains must sample all configurations to attain their fully isotropic spatial distributions. These results, which suggest that the amorphous phase is the dominant player in the context, argue strongly that the proper polymer morphology needs to be modeled to ensure accurate estimates of the ionic component of the dielectric constant.« less

Morphological adaptation and protein modulation of myotendinous junction following moderate aerobic training.

PubMed

Curzi, Davide; Baldassarri, Valentina; De Matteis, Rita; Salamanna, Francesca; Bolotta, Alessandra; Frizziero, Antonio; Fini, Milena; Marini, Marina; Falcieri, Elisabetta

2015-04-01

Myotendinous junction is the muscle-tendon interface through which the contractile force can be transferred from myofibrils to the tendon extracellular matrix. At the ultrastructural level, aerobic training can modify the distal myotendinous junction of rat gastrocnemius, increasing the contact area between tissues. The aim of this work is to investigate the correlation between morphological changes and protein modulation of the myotendinous junction following moderate training. For this reason, talin, vinculin and type IV collagen amount and spatial distribution were investigated by immunohistochemistry and confocal microscopy. The images were then digitally analyzed by evaluating fluorescence intensity. Morphometric analysis revealed a significant increased thickening of muscle basal lamina in the trained group (53.1 ± 0.4 nm) with respect to the control group (43.9 ± 0.3 nm), and morphological observation showed the presence of an electron-dense area in the exercised muscles, close to the myotendinous junction. Protein concentrations appeared significantly increased in the trained group (talin +22.2%; vinculin +22.8% and type IV collagen +11.8%) with respect to the control group. Therefore, our findings suggest that moderate aerobic training induces/causes morphological changes at the myotendinous junction, correlated to the synthesis of structural proteins of the muscular basal lamina and of the cytoskeleton.

Gradually Decreasing Starch Branching Enzyme Expression Is Responsible for the Formation of Heterogeneous Starch Granules1[OPEN

PubMed Central

Hu, Pan; Chen, Zichun

2018-01-01

Rice (Oryza sativa) endosperm is mainly occupied by homogeneous polygonal starch from inside to outside. However, morphologically different (heterogeneous) starches have been identified in some rice mutants. How these heterogeneous starches form remains unknown. A high-amylose rice line (TRS) generated through the antisense inhibition of starch branching synthase I (SBEI) and SBEIIb contains four heterogeneous starches: polygonal, aggregate, elongated, and hollow starch; these starches are regionally distributed in the endosperm from inside to outside. Here, we investigated the relationship between SBE dosage and the morphological architecture of heterogeneous starches in TRS endosperm from the view of the molecular structure of starch. The results indicated that their molecular structures underwent regular changes, including gradually increasing true amylose content but decreasing amylopectin content and gradually increasing the ratio of amylopectin long chain but decreasing the ratio of amylopectin short chain. Granule-bound starch synthase I (GBSSI) amounts in the four heterogeneous starches were not significantly different from each other, but SBEI, SBEIIa, and SBEIIb showed a gradually decreasing trend. Further immunostaining analysis revealed that the gradually decreasing SBEs acting on the formation of the four heterogeneous granules were mainly due to the spatial distribution of the three SBEs in the endosperm. It was suggested that the decreased amylopectin in starch might remove steric hindrance and provide extra space for abundant amylose accumulation when the GBSSI amount was not elevated. Furthermore, extra amylose coupled with altered amylopectin structure possibly led to morphological changes in heterogeneous granules. PMID:29133372

[Response of fine roots to soil nutrient spatial heterogeneity].

PubMed

Wang, Qingcheng; Cheng, Yunhuan

2004-06-01

The spatial heterogeneity is the complexity and variation of systems or their attributes, and the heterogeneity of soil nutrients is ubiquitous in all natural ecosystems. The scale of spatial heterogeneity varies considerably among different ecosystems, from tens of centimeters to hundred meters. Some of the scales can be detected by individual plant. Because the growth of individual plants can be strongly influenced by soil heterogeneity, it follows that the inter-specific competition should also be affected. During the long process of evolution, plants developed various plastic responses with their root system, including morphological, physiological and mycorrhizal plasticity, to maximize the nutrient acquisition from heterogeneous soil resources. Morphological plasticity, an adjustment in root system spatial allocation and architecture in response to spatial heterogeneous distribution of available soil resources, has been most intensively studied, and root proliferation in nutrient rich patches has been certified for many species. The species that do respond may have an increased rate of nutrient uptake, leading to a competitive advantage. Scale and precision are two important features employed in describing the size and foraging behavior of root system. It was hypothesized that scale and precision is negatively related, i. e., the species with high scale of root system tend to be a less precise forager. The outcomes of different research work have been diverse, far from reaching a consensus. Species with high scale are not necessarily less precise in fine root allocation, and vice versa. The proliferation of fine root in enriched micro-sites is species dependent, and also affected by other factors, such as patch attributes (size and nutrients concentration), nutrients, and overall soil fertility. Beside root proliferation in nutrient enriched patches, plants can also adapt themselves to the heterogeneous soil environment by altering other root characteristics such as fine root diameter, branch angle, length, and spatial architecture of root system. Physiological and mycorrhizal plasticity can add some influence on the morphological plasticity to some extent, but they are less studied. Roots located in different patches can quickly regulate their nutrient uptake kinetics within different nutrient patches, and increase overall nutrient uptake. Physiological response may, to certain extent, reduce morphological response, and is meaningful for plant growth on soils with frequently changing spatial and temporal heterogeneity. Mycorrhizal plasticity has been least studied so far. Some researches revealed that mycorrhiza, rather than fine root, proliferated in enriched patches. But, it is not the case with other studies. The proliferation of mycorrhiza within enriched patches is more profitable in term of carbon invest. The effect of fine root proliferation on nutrient uptake is complex, depending on ion mobility and whether or not neighboring plant exists. The influence of root plasticity on the growth of plants is species specific. Some species (sensitive species) gain growth benefit, while others don't. The ability of an individual plant to response to heterogeneous resources has significant effect on its competitive ability and its fate within the community, and eventually shapes the composition and structure of the community.

Linking morphology to ecosystem structure using satellite for monitoring Wetlands

NASA Astrophysics Data System (ADS)

Filipponi, F.; Valentini, E.; Taramelli, A.; Giulio, S.; Persichillo, M.; D'Alpaos, A.

2013-12-01

Modern views on the behavior of complex systems, like the low lying coastal areas, allow the interpretation of phenomenological coastal landscape as a steady state that corresponds to a dynamic equilibrium, and to a self-organized exogenic order of the edge of the chaos. Space-borne data, coupled with field spectral measurements and observations, are quantitative tools for the research on feedbacks between the biological influences and physical forming processes steering landscape changes, allowing the identification of critical thresholds beyond which the ecosystem reach a new steady state. This research deals with a multi-temporal change analysis of halophytic vegetation and morphology of two analogous accumulation sites along the northern Adriatic adjoining coast: the 'Bacan island' (Venice Lagoon) and the Spit of Goro Lagoon (Po Delta). These two sites represent delicate ecosystems and are susceptible to different drivers being located close to the lagoon's inlet. The two tests sites support a great biodiversity and supply important resources, so the conservation of their habitats is necessary to maintain the ecosystem services provision. Evidence from previous studies highlights the role of climate, mostly winds and hydrology acting on sediment transport, but only few accounts for the role of vegetation in landform shaping and sediment stabilizing. In this study spatial trends of both vegetation cover/typology and sediment/soil distribution are implemented to obtain detailed classification from EO. By means of sub-pixel processing techniques (Spectral Mixing Analysis), classifications are analyzed in terms of spatial (Power law) and temporal (Empirical Orthogonal Functions) patterns, in order to find the fingerprint of spatial patterns of vegetation, sediments and very shallow waters and their variation over time. The application of a double step analysis from coarse to finer spatial resolution lead first to a biophysical cover map in term of vegetation typologies and cover percent, sediment typology and length of the different branches highlighting the mosaic of spatial pattern of vegetation, sediments and morphology. Then our results support the fact that the most frequent patch sizes, corresponding to the smallest vegetation patches as consistent with a power law relationship, are associated with the highest length values and specific sediments values; as the patch sizes become larger, and thus less frequent, the length next to patches decreases and reaches much lower values in relations to sediments classes. This indicates that at first, the formation of small vegetation patches increases flow resistance and facilitates the formation of new morphology; at the same time, when a threshold size is reached (due to patch growth or merging between adjacent patches), vegetation controls length of the different branches. In the framework of spatial self-organization, this method gives rise to a new approach to the study of landscape-forming processes, taking into account the prominent role of living organisms in shaping Earth's surface, in order to develop new instruments and tools that allow modular variation of spatial and temporal scales of observation (i.e. from local to regional; from seasonal to inter annual) that is mandatory for a valuable implementation of current management and conservation strategies (Integrated Coastal Zone Management).

Remote Sensing and Modeling of Landslides: Detection, Monitoring and Risk Evaluation

NASA Technical Reports Server (NTRS)

Kirschbaum, Dalia; Fukuoka, Hiroshi

2012-01-01

Landslides are one of the most pervasive hazards in the world, resulting in more fatalities and economic damage than is generally recognized_ Occurring over an extensive range of lithologies, morphologies, hydrologies, and climates, mass movements can be triggered by intense or prolonged rainfall, seismicity, freeze/thaw processes, and antbropogertic activities, among other factors. The location, size, and timing of these processes are characteristically difficult to predict and assess because of their localized spatial scales, distribution, and complex interactions between rainfall infiltration, hydromechanical properties of the soil, and the underlying surface composition. However, the increased availability, accessibility, and resolution of remote sensing data offer a new opportunity to explore issues of landslide susceptibility, hazard, and risk over a variety of spatial scales. This special issue presents a series of papers that investigate the sources, behavior, and impacts of different mass movement types using a diverse set of data sources and evaluation methodologies.

Maximum entropy deconvolution of the optical jet of 3C 273

NASA Technical Reports Server (NTRS)

Evans, I. N.; Ford, H. C.; Hui, X.

1989-01-01

The technique of maximum entropy image restoration is applied to the problem of deconvolving the point spread function from a deep, high-quality V band image of the optical jet of 3C 273. The resulting maximum entropy image has an approximate spatial resolution of 0.6 arcsec and has been used to study the morphology of the optical jet. Four regularly-spaced optical knots are clearly evident in the data, together with an optical 'extension' at each end of the optical jet. The jet oscillates around its center of gravity, and the spatial scale of the oscillations is very similar to the spacing between the optical knots. The jet is marginally resolved in the transverse direction and has an asymmetric profile perpendicular to the jet axis. The distribution of V band flux along the length of the jet, and accurate astrometry of the optical knot positions are presented.

Describing the brain in autism in five dimensions--magnetic resonance imaging-assisted diagnosis of autism spectrum disorder using a multiparameter classification approach.

PubMed

Ecker, Christine; Marquand, Andre; Mourão-Miranda, Janaina; Johnston, Patrick; Daly, Eileen M; Brammer, Michael J; Maltezos, Stefanos; Murphy, Clodagh M; Robertson, Dene; Williams, Steven C; Murphy, Declan G M

2010-08-11

Autism spectrum disorder (ASD) is a neurodevelopmental condition with multiple causes, comorbid conditions, and a wide range in the type and severity of symptoms expressed by different individuals. This makes the neuroanatomy of autism inherently difficult to describe. Here, we demonstrate how a multiparameter classification approach can be used to characterize the complex and subtle structural pattern of gray matter anatomy implicated in adults with ASD, and to reveal spatially distributed patterns of discriminating regions for a variety of parameters describing brain anatomy. A set of five morphological parameters including volumetric and geometric features at each spatial location on the cortical surface was used to discriminate between people with ASD and controls using a support vector machine (SVM) analytic approach, and to find a spatially distributed pattern of regions with maximal classification weights. On the basis of these patterns, SVM was able to identify individuals with ASD at a sensitivity and specificity of up to 90% and 80%, respectively. However, the ability of individual cortical features to discriminate between groups was highly variable, and the discriminating patterns of regions varied across parameters. The classification was specific to ASD rather than neurodevelopmental conditions in general (e.g., attention deficit hyperactivity disorder). Our results confirm the hypothesis that the neuroanatomy of autism is truly multidimensional, and affects multiple and most likely independent cortical features. The spatial patterns detected using SVM may help further exploration of the specific genetic and neuropathological underpinnings of ASD, and provide new insights into the most likely multifactorial etiology of the condition.

The Grism Lens-Amplified Survey from Space (GLASS). V. Extent and Spatial Distribution of Star Formation in z ~ 0.5 Cluster Galaxies

NASA Astrophysics Data System (ADS)

Vulcani, Benedetta; Treu, Tommaso; Schmidt, Kasper B.; Poggianti, Bianca M.; Dressler, Alan; Fontana, Adriano; Bradač, Marusa; Brammer, Gabriel B.; Hoag, Austin; Huang, Kuan-Han; Malkan, Matthew; Pentericci, Laura; Trenti, Michele; von der Linden, Anja; Abramson, Louis; He, Julie; Morris, Glenn

2015-12-01

We present the first study of the spatial distribution of star formation in z ˜ 0.5 cluster galaxies. The analysis is based on data taken with the Wide Field Camera 3 as part of the Grism Lens-Amplified Survey from Space (GLASS). We illustrate the methodology by focusing on two clusters (MACS 0717.5+3745 and MACS 1423.8+2404) with different morphologies (one relaxed and one merging) and use foreground and background galaxies as a field control sample. The cluster+field sample consists of 42 galaxies with stellar masses in the range 108-1011 M⊙ and star formation rates in the range 1-20 M⊙ yr-1. Both in clusters and in the field, Hα is more extended than the rest-frame UV continuum in 60% of the cases, consistent with diffuse star formation and inside-out growth. In ˜20% of the cases, the Hα emission appears more extended in cluster galaxies than in the field, pointing perhaps to ionized gas being stripped and/or star formation being enhanced at large radii. The peak of the Hα emission and that of the continuum are offset by less than 1 kpc. We investigate trends with the hot gas density as traced by the X-ray emission, and with the surface mass density as inferred from gravitational lens models, and find no conclusive results. The diversity of morphologies and sizes observed in Hα illustrates the complexity of the environmental processes that regulate star formation. Upcoming analysis of the full GLASS data set will increase our sample size by almost an order of magnitude, verifying and strengthening the inference from this initial data set.

Quantifying the Availability of Tidewater Glacial Ice as Habitat for Harbor Seals in a Tidewater Glacial Fjord in Alaska Using Object-Based Image Analysis of Airborne Visible Imagery

NASA Astrophysics Data System (ADS)

Prakash, A.; Haselwimmer, C. E.; Gens, R.; Womble, J. N.; Ver Hoef, J.

2013-12-01

Tidewater glaciers are prominent landscape features that play a significant role in landscape and ecosystem processes along the southeastern and southcentral coasts of Alaska. Tidewater glaciers calve large icebergs that serve as an important substrate for harbor seals (Phoca vitulina richardii) for resting, pupping, nursing young, molting, and avoiding predators. Many of the tidewater glaciers in Alaska are retreating, which may influence harbor seal populations. Our objectives are to investigate the relationship between ice conditions and harbor seal distributions, which are poorly understood, in John's Hopkins Inlet, Glacier Bay National Park, Alaska, using a combination of airborne remote sensing and statistical modeling techniques. We present an overview of some results from Object-Based Image Analysis (OBIA) for classification of a time series of very high spatial resolution (4 cm pixels) airborne imagery acquired over John's Hopkins Inlet during the harbor seal pupping season in June and during the molting season in August from 2007 - 2012. Using OBIA we have developed a workflow to automate processing of the large volumes (~1250 images/survey) of airborne visible imagery for 1) classification of ice products (e.g. percent ice cover, percent brash ice, percent ice bergs) at a range of scales, and 2) quantitative determination of ice morphological properties such as iceberg size, roundness, and texture that are not found in traditional per-pixel classification approaches. These ice classifications and morphological variables are then used in statistical models to assess relationships with harbor seal abundance and distribution. Ultimately, understanding these relationships may provide novel perspectives on the spatial and temporal variation of harbor seals in tidewater glacial fjords.

Biocrust spatial distribution at landscape scale is strongly controlled by terrain attributes: Topographic thresholds for colonization

NASA Astrophysics Data System (ADS)

Raúl Román Fernández, José; Rodríguez-Caballero, Emilio; Chamizo de la Piedra, Sonia; Roncero Ramos, Bea; Cantón Castilla, Yolanda

2017-04-01

Biological soil crusts (biocrusts) are spatially variable components of soil. Whereas biogeographic, climatic or soil properties drive biocrust distribution from regional to global scales, biocrust spatial distribution within the landscape is controlled by topographic forces that create specific microhabitats that promote or difficult biocrust growth. By knowing which are the variables that control biocrust distribution and their individual effect we can establish the abiotic thresholds that limit natural biocrust colonization on different environments, which may be very useful for designing soil restoration programmes. The objective of this study was to analyse the influence of topographic-related variables in the distribution of different types of biocrust within a semiarid catchment where cyanobacteria and lichen dominated biocrust represent the most important surface components, El Cautivo experimental area (SE Spain). To do this, natural coverage of i) bare soil, ii) vegetation, iii) cyanobacteria-dominated soil crust and iv) lichen-dominated soil crust were measured on 70 experimental plots distributed across 23 transect (three 4.5 x 4.5 m plots per transect). Following that, we used a 1m x 1m DEM (Digital Elevation Model) of the study site obtained from a LiDAR point cloud to calculate different topographic variables such as slope gradient, length slope (LS) factor (potential sediment transport index), potential incoming solar radiation, topographic wetness index (WI) and maximum flow accumulation. Canonical Correspondence Analysis was performed to infer the influence of each variable in the coverage of each class and thresholds of biocrust colonization were identified mathematically by means of linear regression analysis describing the relationship between each factor and biocrust cover. Our results show that the spatial distribution of cyanobacteria-dominated biocrust, which showed physiological and morphological adaptation to cope with drought and UVA radiation, was mostly controlled by incoming solar radiation, being mostly located on areas with high incoming solar radiation and low slope, showing a threshold at 48 degrees from which they are not found. Lichen-dominated biocrust, on the other hand, colonize the uppermost and steepest part of north aspect hillslopes where incoming solar radiation and ETP are low, as consequence of their lower capacity to survive under extreme temperatures and drought conditions. With higher capacity of the soil to retain run-on (WI), surface is mostly cover by plants instead of lichens. Bare soil distribution is controlled by the combination of two factors, slope and solar radiation, covering the south aspect hillslopes, where slope gradient is high and there is high incoming solar radiation and ETP for lichen colonization.

An improved protocol for optical projection tomography imaging reveals lobular heterogeneities in pancreatic islet and β-cell mass distribution

PubMed Central

2011-01-01

Optical projection tomography (OPT) imaging is a powerful tool for three-dimensional imaging of gene and protein distribution patterns in biomedical specimens. We have previously demonstrated the possibility, by this technique, to extract information of the spatial and quantitative distribution of the islets of Langerhans in the intact mouse pancreas. In order to further increase the sensitivity of OPT imaging for this type of assessment, we have developed a protocol implementing a computational statistical approach: contrast limited adaptive histogram equalization (CLAHE). We demonstrate that this protocol significantly increases the sensitivity of OPT imaging for islet detection, helps preserve islet morphology and diminish subjectivity in thresholding for tomographic reconstruction. When applied to studies of the pancreas from healthy C57BL/6 mice, our data reveal that, at least in this strain, the pancreas harbors substantially more islets than has previously been reported. Further, we provide evidence that the gastric, duodenal and splenic lobes of the pancreas display dramatic differences in total and relative islet and β-cell mass distribution. This includes a 75% higher islet density in the gastric lobe as compared to the splenic lobe and a higher relative volume of insulin producing cells in the duodenal lobe as compared to the other lobes. Altogether, our data show that CLAHE substantially improves OPT based assessments of the islets of Langerhans and that lobular origin must be taken into careful consideration in quantitative and spatial assessments of the pancreas. PMID:21633198

The Hierarchical Distribution of the Young Stellar Clusters in Six Local Star-forming Galaxies

NASA Astrophysics Data System (ADS)

Grasha, K.; Calzetti, D.; Adamo, A.; Kim, H.; Elmegreen, B. G.; Gouliermis, D. A.; Dale, D. A.; Fumagalli, M.; Grebel, E. K.; Johnson, K. E.; Kahre, L.; Kennicutt, R. C.; Messa, M.; Pellerin, A.; Ryon, J. E.; Smith, L. J.; Shabani, F.; Thilker, D.; Ubeda, L.

2017-05-01

We present a study of the hierarchical clustering of the young stellar clusters in six local (3-15 Mpc) star-forming galaxies using Hubble Space Telescope broadband WFC3/UVIS UV and optical images from the Treasury Program LEGUS (Legacy ExtraGalactic UV Survey). We identified 3685 likely clusters and associations, each visually classified by their morphology, and we use the angular two-point correlation function to study the clustering of these stellar systems. We find that the spatial distribution of the young clusters and associations are clustered with respect to each other, forming large, unbound hierarchical star-forming complexes that are in general very young. The strength of the clustering decreases with increasing age of the star clusters and stellar associations, becoming more homogeneously distributed after ˜40-60 Myr and on scales larger than a few hundred parsecs. In all galaxies, the associations exhibit a global behavior that is distinct and more strongly correlated from compact clusters. Thus, populations of clusters are more evolved than associations in terms of their spatial distribution, traveling significantly from their birth site within a few tens of Myr, whereas associations show evidence of disruption occurring very quickly after their formation. The clustering of the stellar systems resembles that of a turbulent interstellar medium that drives the star formation process, correlating the components in unbound star-forming complexes in a hierarchical manner, dispersing shortly after formation, suggestive of a single, continuous mode of star formation across all galaxies.

Tectonic resurfacing of Venus

NASA Technical Reports Server (NTRS)

Malin, Michael C.; Grimm, Robert E.; Herrick, Robert R.

1993-01-01

Impact crater distributions and morphologies have traditionally played an important role in unraveling the geologic histories of terrestrial objects, and Venus has proved no exception. The key observations are: mean crater retention age about 500 Ma; apparently random spatial distribution; modest proportion (17 percent) of modified craters; and preferential association of modified craters with areas of low crater density. The simplest interpretation of these data alone is that Venus experienced global resurfacing (assumed to be largely volcanic) prior to 500 Ma, after which time resurfacing rates decreased dramatically. This scenario does not totally exclude present geological activity: some resurfacing and crater obliteration is occurring on part of the planet, but at rates much smaller than on Earth. An alternative endmember model holds that resurfacing is also spatially randomly distributed. Resurfacing of about 1 sq km/yr eliminates craters such that a typical portion of the surface has an age of 500 Ma, but actual ages range from zero to about 1000 Ma. Monte Carlo simulation indicates that the typical resurfacing 'patch' cannot exceed about 500 km in diameter without producing a crater distribution more heterogeneous than observed. Volcanic or tectonic processes within these patches must be locally intense to be able to obliterate craters completely and leave few modified. In this abstract, we describe how global geologic mapping may be used to test resurfacing hypotheses. We present preliminary evidence that the dominant mode of resurfacing on Venus is tectonism, not volcanism, and that this process must be ongoing today. Lastly, we outline a conceptual model in which to understand the relationship between global tectonics and crater distribution and preservation.

Balancing the spatial demands of the developing dentition with the mechanical demands of the catarrhine mandibular symphysis

PubMed Central

Cobb, Samuel N; Panagiotopoulou, Olga

2011-01-01

The superior transverse torus of the catarrhine mandible has been shown to effectively reduce bending at the symphysis during unilateral postcanine biting. While the adult superior transverse torus contains trabecular bone, the juvenile one is almost entirely filled by developing permanent incisors until their eruption. This study uses finite elements analysis (FEA) to investigate whether the presence of developing incisors in the juvenile symphysis increases strains on the superior transverse torus. Two FE models of a juvenile Macaca fascicularis mandible were created: one included all the developing teeth; the second was modified to remove the incisor tooth crypts by filling them with trabecular bone. The models were loaded identically to simulate static physiological unilateral biting on dp4 and strain magnitudes, patterns and distributions of the two FE models were compared. The FEA results show a notable increase in strain magnitudes by up to 40% when the developing incisors are present. The results indicate that, in order to maintain the same symphyseal strain magnitudes during chewing, the presence of the incisors in the symphysis necessitates a larger superior transverse torus in the juvenile than would be required if the superior transverse torus did not house the developing incisors. These results highlight the adaptational balance of the symphyseal morphology throughout ontogeny between biomechanics and the spatial demands of the developing dentition. Based on the findings we therefore propose that the spatial requirements of the developing incisors during ontogeny can act as a constraint on the functional adaptation and subsequent adult morphology observed in the catarrhine mandibular symphysis. PMID:21158857

Spatially modulated structural colour in bird feathers.

PubMed

Parnell, Andrew J; Washington, Adam L; Mykhaylyk, Oleksandr O; Hill, Christopher J; Bianco, Antonino; Burg, Stephanie L; Dennison, Andrew J C; Snape, Mary; Cadby, Ashley J; Smith, Andrew; Prevost, Sylvain; Whittaker, David M; Jones, Richard A L; Fairclough, J Patrick A; Parker, Andrew R

2015-12-21

Eurasian Jay (Garrulus glandarius) feathers display periodic variations in the reflected colour from white through light blue, dark blue and black. We find the structures responsible for the colour are continuous in their size and spatially controlled by the degree of spinodal phase separation in the corresponding region of the feather barb. Blue structures have a well-defined broadband ultra-violet (UV) to blue wavelength distribution; the corresponding nanostructure has characteristic spinodal morphology with a lengthscale of order 150 nm. White regions have a larger 200 nm nanostructure, consistent with a spinodal process that has coarsened further, yielding broader wavelength white reflectance. Our analysis shows that nanostructure in single bird feather barbs can be varied continuously by controlling the time the keratin network is allowed to phase separate before mobility in the system is arrested. Dynamic scaling analysis of the single barb scattering data implies that the phase separation arrest mechanism is rapid and also distinct from the spinodal phase separation mechanism i.e. it is not gelation or intermolecular re-association. Any growing lengthscale using this spinodal phase separation approach must first traverse the UV and blue wavelength regions, growing the structure by coarsening, resulting in a broad distribution of domain sizes.

The effects of the spatial influence function on orthotropic femur remodelling.

PubMed

Shang, Y; Bai, J; Peng, L

2008-07-01

The morphology and internal structure of bone are modulated by the mechanical stimulus. The osteocytes can sense the stimulus signals from the adjacent regions and respond to them through bone growth or bone absorption. This mechanism can be modelled as the spatial influence function (SIF) in bone adaptation algorithm. In this paper, the remodelling process was simulated in human femurs using an adaptation algorithm with and without SIF, and the trabecular bone was assumed to be orthotropic. A different influence radius and weighting factor were adopted to study the effects of the SIF on the bone density distribution and trabecular alignment. The results have shown that the mean density and L-T ratio (the ratio of longitudinal modulus to transverse modulus) had an excellent linear relationship with the weighting factor when the influence radius was small. The characteristics of density distribution and L-T ratio accorded with the actual observation or measurement when a small weighting factor was used. The large influence radius and weighting factor led to unrealistic results. In contrast, the SIF hardly affected the trabecular alignment, as the mean variation angles of principal axes were less than 1.0 degree for any influence radius and weighting factor.

Lateral weathering gradients in glaciated catchments

NASA Astrophysics Data System (ADS)

McGuire, K. J.; Bailey, S. W.; Ross, D. S.; Strahm, B. D.; Schreiber, M. E.

2016-12-01

Mineral dissolution and the distribution of weathering products are fundamental processes that drive development and habitability of the Earth's critical zone; yet, the spatial configuration of these processes in some systems is not well understood. Feedbacks between hydrologic flows and weathering fluxes are necessary to understanding how the critical zone develops. In upland glaciated catchments of the northeastern USA, primary mineral dissolution and the distribution of weathering products are spatially distinct and predictable over short distances. Hillslopes, where shallow soils force lateral hydrologic fluxes through accumulated organic matter, produce downslope gradients in mineral depletion, weathering product accumulation, soil development, and solute chemistry. We propose that linked gradients in hydrologic flow paths, soil depth, and vegetation lead to predictable differences in the location and extent of mineral dissolution in regolith (soil, subsoil, and rock fragments) and bedrock, and that headwater catchments within the upland glaciated northeast show a common architecture across hillslopes as a result. Examples of these patterns and processes will be illustrated using observations from the Hubbard Brook Experimental Forest in New Hampshire where laterally distinct soils with strong morphological and biogeochemical gradients have been documented. Patterns in mineral depletion and product accumulation are essential in predicting how ecosystems will respond to stresses, disturbance, and management.

Small-angle x-ray scattering in amorphous silicon: A computational study

NASA Astrophysics Data System (ADS)

Paudel, Durga; Atta-Fynn, Raymond; Drabold, David A.; Elliott, Stephen R.; Biswas, Parthapratim

2018-05-01

We present a computational study of small-angle x-ray scattering (SAXS) in amorphous silicon (a -Si) with particular emphasis on the morphology and microstructure of voids. The relationship between the scattering intensity in SAXS and the three-dimensional structure of nanoscale inhomogeneities or voids is addressed by generating large high-quality a -Si networks with 0.1%-0.3% volume concentration of voids, as observed in experiments using SAXS and positron annihilation spectroscopy. A systematic study of the variation of the scattering intensity in the small-angle scattering region with the size, shape, number density, and the spatial distribution of the voids in the networks is presented. Our results suggest that the scattering intensity in the small-angle region is particularly sensitive to the size and the total volume fraction of the voids, but the effect of the geometry or shape of the voids is less pronounced in the intensity profiles. A comparison of the average size of the voids obtained from the simulated values of the intensity, using the Guinier approximation and Kratky plots, with that of the same from the spatial distribution of the atoms in the vicinity of void surfaces is presented.

Spatially modulated structural colour in bird feathers

PubMed Central

Parnell, Andrew J.; Washington, Adam L.; Mykhaylyk, Oleksandr O.; Hill, Christopher J.; Bianco, Antonino; Burg, Stephanie L.; Dennison, Andrew J. C.; Snape, Mary; Cadby, Ashley J.; Smith, Andrew; Prevost, Sylvain; Whittaker, David M.; Jones, Richard A. L.; Fairclough, J. Patrick. A.; Parker, Andrew R.

2015-01-01

Eurasian Jay (Garrulus glandarius) feathers display periodic variations in the reflected colour from white through light blue, dark blue and black. We find the structures responsible for the colour are continuous in their size and spatially controlled by the degree of spinodal phase separation in the corresponding region of the feather barb. Blue structures have a well-defined broadband ultra-violet (UV) to blue wavelength distribution; the corresponding nanostructure has characteristic spinodal morphology with a lengthscale of order 150 nm. White regions have a larger 200 nm nanostructure, consistent with a spinodal process that has coarsened further, yielding broader wavelength white reflectance. Our analysis shows that nanostructure in single bird feather barbs can be varied continuously by controlling the time the keratin network is allowed to phase separate before mobility in the system is arrested. Dynamic scaling analysis of the single barb scattering data implies that the phase separation arrest mechanism is rapid and also distinct from the spinodal phase separation mechanism i.e. it is not gelation or intermolecular re-association. Any growing lengthscale using this spinodal phase separation approach must first traverse the UV and blue wavelength regions, growing the structure by coarsening, resulting in a broad distribution of domain sizes. PMID:26686280

Spatial and temporal correlation between beach and wave processes: implications for bar-berm sediment transition

NASA Astrophysics Data System (ADS)

Joevivek, V.; Chandrasekar, N.; Saravanan, S.; Anandakumar, H.; Thanushkodi, K.; Suguna, N.; Jaya, J.

2018-06-01

Investigation of a beach and its wave conditions is highly requisite for understanding the physical processes in a coast. This study composes spatial and temporal correlation between beach and nearshore processes along the extensive sandy beach of Nagapattinam coast, southeast peninsular India. The data collection includes beach profile, wave data, and intertidal sediment samples for 2 years from January 2011 to January 2013. The field data revealed significant variability in beach and wave morphology during the northeast (NE) and southwest (SW) monsoon. However, the beach has been stabilized by the reworking of sediment distribution during the calm period. The changes in grain sorting and longshore sediment transport serve as a clear evidence of the sediment migration that persevered between foreshore and nearshore regions. The Empirical Orthogonal Function (EOF) analysis and Canonical Correlation Analysis (CCA) were utilized to investigate the spatial and temporal linkages between beach and nearshore criterions. The outcome of the multivariate analysis unveiled that the seasonal variations in the wave climate tends to influence the bar-berm sediment transition that is discerned in the coast.

Strain-induced formation of fourfold symmetric SiGe quantum dot molecules.

PubMed

Zinovyev, V A; Dvurechenskii, A V; Kuchinskaya, P A; Armbrister, V A

2013-12-27

The strain field distribution at the surface of a multilayer structure with disklike SiGe nanomounds formed by heteroepitaxy is exploited to arrange the symmetric quantum dot molecules typically consisting of four elongated quantum dots ordered along the [010] and [100] directions. The morphological transition from fourfold quantum dot molecules to continuous fortresslike quantum rings with an increasing amount of deposited Ge is revealed. We examine key mechanisms underlying the formation of lateral quantum dot molecules by using scanning tunneling microscopy and numerical calculations of the strain energy distribution on the top of disklike SiGe nanomounds. Experimental data are well described by a simple thermodynamic model based on the accurate evaluation of the strain dependent part of the surface chemical potential. The spatial arrangement of quantum dots inside molecules is attributed to the effect of elastic property anisotropy.

Mars Global Surveyor Data Analysis Program. Origins of Small Volcanic Cones: Eruption Mechanisms and Implications for Water on Mars

NASA Technical Reports Server (NTRS)

Fagents, Sarah A.; Greeley, Ronald; Thordarson, Thorvaldur

2002-01-01

The goal of the proposed work was to determine the origins of small volcanic cones observed in Mars Global Surveyor (MGS) data, and their implications for regolith ice stores and magma volatile contents. For this 1-year study, our approach involved a combination of: Quantitative morphologic analysis and interpretation of Mars Orbiter Camera (MOC) and Mars Orbiter Laser Altimeter (MOLA) data; Numerical modeling of eruption processes responsible for producing the observed features; Fieldwork on terrestrial analogs in Iceland. Following this approach, this study succeeded in furthering our understanding of (i) the spatial and temporal distribution of near-surface water ice, as defined by the distribution and sizes of rootless volcanic cones ("pseudocraters"), and (ii) the properties, eruption conditions, and volatile contents of magmas producing primary vent cones.

Relation between clinical mature and immature lymphocyte cells in human peripheral blood and their spatial label free scattering patterns

NASA Astrophysics Data System (ADS)

Zhang, Lu; Zhao, Xin; Zhang, Zhenxi; Zhao, Hong; Chen, Wei; Yuan, Li

2016-07-01

A single living cell's light scattering pattern (LSP) in the horizontal plane, which has been denoted as the cell's "2D fingerprint," may provide a powerful label-free detection tool in clinical applications. We have recently studied the LSP in spatial scattering planes, denoted as the cell's "3D fingerprint," for mature and immature lymphocyte cells in human peripheral blood. The effects of membrane size, morphology, and the existence of the nucleus on the spatial LSP are discussed. In order to distinguish clinical label-free mature and immature lymphocytes, the special features of the spatial LSP are studied by statistical method in both the spatial and frequency domains. Spatial LSP provides rich information on the cell's morphology and contents, which can distinguish mature from immature lymphocyte cells and hence ultimately it may be a useful label-free technique for clinical leukemia diagnosis.

Construction of Green Tide Monitoring System and Research on its Key Techniques

NASA Astrophysics Data System (ADS)

Xing, B.; Li, J.; Zhu, H.; Wei, P.; Zhao, Y.

2018-04-01

As a kind of marine natural disaster, Green Tide has been appearing every year along the Qingdao Coast, bringing great loss to this region, since the large-scale bloom in 2008. Therefore, it is of great value to obtain the real time dynamic information about green tide distribution. In this study, methods of optical remote sensing and microwave remote sensing are employed in Green Tide Monitoring Research. A specific remote sensing data processing flow and a green tide information extraction algorithm are designed, according to the optical and microwave data of different characteristics. In the aspect of green tide spatial distribution information extraction, an automatic extraction algorithm of green tide distribution boundaries is designed based on the principle of mathematical morphology dilation/erosion. And key issues in information extraction, including the division of green tide regions, the obtaining of basic distributions, the limitation of distribution boundary, and the elimination of islands, have been solved. The automatic generation of green tide distribution boundaries from the results of remote sensing information extraction is realized. Finally, a green tide monitoring system is built based on IDL/GIS secondary development in the integrated environment of RS and GIS, achieving the integration of RS monitoring and information extraction.

In vitro degradation of ZnO flowered coated Zn-Mg alloys in simulated physiological conditions.

PubMed

Alves, Marta M; Prosek, Tomas; Santos, Catarina F; Montemor, Maria F

2017-01-01

Flowered coatings composed by ZnO crystals were successfully electrodeposited on Zn-Mg alloys. The distinct coatings morphologies were found to be dependent upon the solid interfaces distribution, with the smaller number of bigger flowers (ø 46μm) obtained on Zn-Mg alloy containing 1wt.% Mg (Zn-1Mg) contrasting with the higher number of smaller flowers (ø 38μm) achieved on Zn-Mg alloy with 2wt.% Mg (Zn-2Mg). To assess the in vitro behaviour of these novel resorbable materials, a detailed evaluation of the degradation behaviour, in simulated physiological conditions, was performed by electrochemical impedance spectroscopy (EIS). The opposite behaviours observed in the corrosion resistances resulted in the build-up of distinct corrosion layers. The products forming these layers, preferentially detected at the flowers, were identified and their spatial distribution disclosed by EDS and Raman spectroscopy techniques. The presence of smithsonite, simonkolleite, hydrozincite, skorpionite and hydroxyapatite were assigned to both corrosion layers. However the distinct spatial distributions depicted may impact the biocompatibility of these resorbable materials, with the bone analogue compounds (hydroxyapatite and skorpionite) depicted in-between the ZnO crystals and on the top corrosion layer of Zn-1Mg flowers clearly contrasting with the hindered layer formed at the interface of the substrate with the flowers on Zn-2Mg. Copyright © 2016 Elsevier B.V. All rights reserved.

Global morphological analysis of marine viruses shows minimal regional variation and dominance of non-tailed viruses

PubMed Central

Brum, Jennifer R; Schenck, Ryan O; Sullivan, Matthew B

2013-01-01

Viruses influence oceanic ecosystems by causing mortality of microorganisms, altering nutrient and organic matter flux via lysis and auxiliary metabolic gene expression and changing the trajectory of microbial evolution through horizontal gene transfer. Limited host range and differing genetic potential of individual virus types mean that investigations into the types of viruses that exist in the ocean and their spatial distribution throughout the world's oceans are critical to understanding the global impacts of marine viruses. Here we evaluate viral morphological characteristics (morphotype, capsid diameter and tail length) using a quantitative transmission electron microscopy (qTEM) method across six of the world's oceans and seas sampled through the Tara Oceans Expedition. Extensive experimental validation of the qTEM method shows that neither sample preservation nor preparation significantly alters natural viral morphological characteristics. The global sampling analysis demonstrated that morphological characteristics did not vary consistently with depth (surface versus deep chlorophyll maximum waters) or oceanic region. Instead, temperature, salinity and oxygen concentration, but not chlorophyll a concentration, were more explanatory in evaluating differences in viral assemblage morphological characteristics. Surprisingly, given that the majority of cultivated bacterial viruses are tailed, non-tailed viruses appear to numerically dominate the upper oceans as they comprised 51–92% of the viral particles observed. Together, these results document global marine viral morphological characteristics, show that their minimal variability is more explained by environmental conditions than geography and suggest that non-tailed viruses might represent the most ecologically important targets for future research. PMID:23635867

3D granulometry: grain-scale shape and size distribution from point cloud dataset of river environments

NASA Astrophysics Data System (ADS)

Steer, Philippe; Lague, Dimitri; Gourdon, Aurélie; Croissant, Thomas; Crave, Alain

2016-04-01

The grain-scale morphology of river sediments and their size distribution are important factors controlling the efficiency of fluvial erosion and transport. In turn, constraining the spatial evolution of these two metrics offer deep insights on the dynamics of river erosion and sediment transport from hillslopes to the sea. However, the size distribution of river sediments is generally assessed using statistically-biased field measurements and determining the grain-scale shape of river sediments remains a real challenge in geomorphology. Here we determine, with new methodological approaches based on the segmentation and geomorphological fitting of 3D point cloud dataset, the size distribution and grain-scale shape of sediments located in river environments. Point cloud segmentation is performed using either machine-learning algorithms or geometrical criterion, such as local plan fitting or curvature analysis. Once the grains are individualized into several sub-clouds, each grain-scale morphology is determined using a 3D geometrical fitting algorithm applied on the sub-cloud. If different geometrical models can be conceived and tested, only ellipsoidal models were used in this study. A phase of results checking is then performed to remove grains showing a best-fitting model with a low level of confidence. The main benefits of this automatic method are that it provides 1) an un-biased estimate of grain-size distribution on a large range of scales, from centimeter to tens of meters; 2) access to a very large number of data, only limited by the number of grains in the point-cloud dataset; 3) access to the 3D morphology of grains, in turn allowing to develop new metrics characterizing the size and shape of grains. The main limit of this method is that it is only able to detect grains with a characteristic size greater than the resolution of the point cloud. This new 3D granulometric method is then applied to river terraces both in the Poerua catchment in New-Zealand and along the Laonong river in Taiwan, which point clouds were obtained using both terrestrial lidar scanning and structure from motion photogrammetry.

At least some meiofaunal species are not everywhere. Indication of geographic, ecological and geological barriers affecting the dispersion of species of Ototyphlonemertes (Nemertea, Hoplonemertea).

PubMed

Leasi, Francesca; Andrade, Sónia Cristina da Silva; Norenburg, Jon

2016-03-01

Most meiofaunal species are known to have a broad distribution with no apparent barriers to their dispersion. However, different morphological and/or molecular methods supported patterns of diversity and distribution that may be different among taxa while also conflicting within the same group. We accurately assessed the patterns of geographic distribution in actual genetic species of a marine meiofaunal animal model: Ototyphlonemertes. Specimens were collected from several sites around Europe, Northern and Central America, Southern America, Pacific Islands and Asia. We sequenced regions of two mitochondrial and two nuclear genes. Using single-gene, a concatenated data set, multilocus approaches and different DNA taxonomy methods, we disentangled the actual diversity and the spatial structures of haplotypes and tested the possible correlation between genetic diversity and geographic distance. The results show (i) the importance of using several genes to uncover both diversity and highlight phylogeographic relationships among species and that (ii) independent genetic evolutionary entities have a narrower distribution than morphological species. Moreover, (iii) a Mantel test supported a positive correlation between genetic and geographical distance. By sampling from the two sides of Isthmus of Panama, we were additionally able to identify lineage divergence times that are concordant with vicariance mechanisms caused by the geological closure of the seaway across the Isthmus. We therefore propose that in addition to distance, other geological and ecological conditions are also barriers to the dispersion of and gene flow in marine meiofaunal organisms. © 2016 John Wiley & Sons Ltd.

Investigation of multimodal forward scatter phenotyping from bacterial colonies

NASA Astrophysics Data System (ADS)

Kim, Huisung

A rapid, label-free, and elastic light scattering (ELS) based bacterial colony phenotyping technology, bacterial rapid detection using optical scattering technology (BARDOT) provides a successful classification of several bacterial genus and species. For a thorough understanding of the phenomena and overcoming the limitations of the previous design, five additional modalities from a bacterial colony: 3D morphology, spatial optical density (OD) distribution, spectral forward scattering pattern, spectral OD, and surface backward reflection pattern are proposed to enhance the classification/identification ratio, and the feasibilities of each modality are verified. For the verification, three different instruments: integrated colony morphology analyzer (ICMA), multi-spectral BARDOT (MS-BARDOT) , and multi-modal BARDOT (MM-BARDOT) are proposed and developed. The ICMA can measure 3D morphology and spatial OD distribution of the colony simultaneously. A commercialized confocal displacement meter is used to measure the profiles of the bacterial colonies, together with a custom built optical density measurement unit to interrogate the biophysics behind the collective behavior of a bacterial colony. The system delivers essential information related to the quantitative growth dynamics (height, diameter, aspect ratio, optical density) of the bacterial colony, as well as, a relationship in between the morphological characteristics of the bacterial colony and its forward scattering pattern. Two different genera: Escherichia coli O157:H7 EDL933, and Staphylococcus aureus ATCC 25923 are selected for the analysis of the spatially resolved growth dynamics, while, Bacillus spp. such as B. subtilis ATCC 6633, B. cereus ATCC 14579, B. thuringiensis DUP6044, B. polymyxa B719W, and B. megaterium DSP 81319, are interrogated since some of the Bacillus spp. provides strikingly different characteristics of ELS patterns, and the origin of the speckle patterns are successfully correlated with the 2-D spatial density map from the ICMA. The MS-BARDOT can measure multispectral elastic-light-scatter patterns of the bacterial colony and its spectral OD to overcome the inherent limits of the single-wavelength BARDOT. A theoretical model for spectral forward scatter patterns from a bacterial colony based on elastic light scatter is presented. The spectral forward scatter patterns are computed by scalar diffraction theory, and compared with experimental results of three discrete wavelengths (405 nm, 635 nm, and 904 nm). Both model and experiment results show an excellent agreement; a longer wavelength induces a wider ring width, a wider ring gap, a smaller pattern size, and smaller numbers of rings. Further analysis using spatial fast Fourier transform (SFFT) shows a good agreement; the spatial frequencies are increasing towards the inward direction, and the slope is inversely proportional to the incoming wavelength. Four major pathogenic bacterial genera (Escherichia coli O157:H7 EDL933, Listeria monocytogenes F4244, Salmonella enterica serovar Enteritidis PT21, and Staphylococcus aureus ATCC 25923) and the seven major Escherichia coli serovar (O26, O45, O103, O111, O121, O145, and O157) with 3-4 strains each are measured and analyzed with the proposed instrument and algorithm. The MM-BARDOT can measure six different modalities: 1) light microscopy, 2) 3D morphology map from confocal microscopy, 3) 3D optical density map, 4) spectral forward scattering pattern, 5) spectral OD, 6) surface backward reflection pattern, and 7) fluorescence of a bacterial colony without moving the specimen. A custom-built confocal microscope with a controller which can be easily attached to an infinity-corrected commercial microscope is designed and built. Since the current BARDOT needs additional information from a bacterial colony to enhance the identification/classification ratio for a lower hierarchy of bacterial taxonomy such as serovar or strain level, the approach can offer a series of coordinates matched and correlated bio-optical characteristics of a colony and enhance the classification accuracy of the previously introduced BARDOT system. Four major pathogenic bacterial genera: Escherichia coli O157:H7 EDL933, Listeria monocytogenes F4244, Salmonella enterica serovar Enteritidis PT21, and Staphylococcus aureus ATCC 25923 are measured and analyzed with the proposed instrument and algorithm. Also, a feasibility test for a smaller colony (up to 500 mum) classification utilizing a surface backward reflection pattern from the measurement is done, and shows a potential as an additional modality for the bacterial phenotyping.

Channel morphology and patterns of bedload transport in fluvial, formerly-glaciated, forested headwater streams of the Columbia Mountains, Canada

NASA Astrophysics Data System (ADS)

Green, Kim; Brardinoni, Francesco; Alila, Younes

2013-04-01

This study examines channel-reach morphology and bedload transport dynamics in relation to landscape structure and snowmelt hydrology in Cotton and Elk Creek, two headwater streams of the southern Columbia Mountains, Canada. Data collection is based on field surveys and GIS analysis in conjunction with a nested monitoring network of water discharge and bed load transfer. The nested monitoring network is designed to examine the effects of channel bed texture, and the influence of free-formed (i.e., boulder cascades, step pools, and riffle pools) and forced-alluvial morphologies (i.e., forced step pools) on bedload entrainment and transport. The landscape is characterized by subdued glaciated topography in which sediment is primarily supplied by bank failures and fluvial transfer dominates the channelized sediment cascade. The spatial distribution of channel types is mainly controlled by glacially imposed local slope together with availability of wood and glacigenic materials. Interestingly, downstream hydraulic geometry as well as downstream patterns of the coarse channel bed fraction and stream power are all insensitive to systematic changes of local slope along the typically stepped longitudinal profiles. An indication that the study alluvial systems are adjusted to the contemporary hydrologic and sedimentary regimes, and as such through post-LGM times have been able to compensate for the glacially-imposed boundary conditions. Stepwise multiple regression indicates that annual bedload yield is chiefly controlled by the number of peak events over threshold discharge. During such high flows, repeated destabilization of channel bed armouring and re-mobilization of sediment stored behind logjams can ensure sediment supply for bedload transport across the entire snowmelt season. In particular, channel morphology affects distinctively the variability of bed load response to hydrologic forcing. The observed spatial variability in annual bedload yield appears to correlate with inter-basin differences in basic morphometric attributes, among which slope aspect plays a prominent role.

Evolution of Body Elongation in Gymnophthalmid Lizards: Relationships with Climate

PubMed Central

Grizante, Mariana B.; Brandt, Renata; Kohlsdorf, Tiana

2012-01-01

The evolution of elongated body shapes in vertebrates has intrigued biologists for decades and is particularly recurrent among squamates. Several aspects might explain how the environment influences the evolution of body elongation, but climate needs to be incorporated in this scenario to evaluate how it contributes to morphological evolution. Climatic parameters include temperature and precipitation, two variables that likely influence environmental characteristics, including soil texture and substrate coverage, which may define the selective pressures acting during the evolution of morphology. Due to development of geographic information system (GIS) techniques, these variables can now be included in evolutionary biology studies and were used in the present study to test for associations between variation in body shape and climate in the tropical lizard family Gymnophthalmidae. We first investigated how the morphological traits that define body shape are correlated in these lizards and then tested for associations between a descriptor of body elongation and climate. Our analyses revealed that the evolution of body elongation in Gymnophthalmidae involved concomitant changes in different morphological traits: trunk elongation was coupled with limb shortening and a reduction in body diameter, and the gradual variation along this axis was illustrated by less-elongated morphologies exhibiting shorter trunks and longer limbs. The variation identified in Gymnophthalmidae body shape was associated with climate, with the species from more arid environments usually being more elongated. Aridity is associated with high temperatures and low precipitation, which affect additional environmental features, including the habitat structure. This feature may influence the evolution of body shape because contrasting environments likely impose distinct demands for organismal performance in several activities, such as locomotion and thermoregulation. The present study establishes a connection between morphology and a broader natural component, climate, and introduces new questions about the spatial distribution of morphological variation among squamates. PMID:23166767

Galaxy Zoo: Morphological Classification of Galaxy Images from the Illustris  Simulation

NASA Astrophysics Data System (ADS)

Dickinson, Hugh; Fortson, Lucy; Lintott, Chris; Scarlata, Claudia; Willett, Kyle; Bamford, Steven; Beck, Melanie; Cardamone, Carolin; Galloway, Melanie; Simmons, Brooke; Keel, William; Kruk, Sandor; Masters, Karen; Vogelsberger, Mark; Torrey, Paul; Snyder, Gregory F.

2018-02-01

Modern large-scale cosmological simulations model the universe with increasing sophistication and at higher spatial and temporal resolutions. These ongoing enhancements permit increasingly detailed comparisons between the simulation outputs and real observational data. Recent projects such as Illustris are capable of producing simulated images that are designed to be comparable to those obtained from local surveys. This paper tests the degree to which Illustris achieves this goal across a diverse population of galaxies using visual morphologies derived from Galaxy Zoo citizen scientists. Morphological classifications provided by these volunteers for simulated galaxies are compared with similar data for a compatible sample of images drawn from the Sloan Digital Sky Survey (SDSS) Legacy Survey. This paper investigates how simple morphological characterization by human volunteers asked to distinguish smooth from featured systems differs between simulated and real galaxy images. Significant differences are identified, which are most likely due to the limited resolution of the simulation, but which could be revealing real differences in the dynamical evolution of populations of galaxies in the real and model universes. Specifically, for stellar masses {M}\\star ≲ {10}11 {M}ȯ , a substantially larger proportion of Illustris galaxies that exhibit disk-like morphology or visible substructure, relative to their SDSS counterparts. Toward higher masses, the visual morphologies for simulated and observed galaxies converge and exhibit similar distributions. The stellar mass threshold indicated by this divergent behavior confirms recent works using parametric measures of morphology from Illustris simulated images. When {M}\\star ≳ {10}11 {M}ȯ , the Illustris data set contains substantially fewer galaxies that classifiers regard as unambiguously featured. In combination, these results suggest that comparison between the detailed properties of observed and simulated galaxies, even when limited to reasonably massive systems, may be misleading.

Morphological classification and spatial distribution of Philippine volcanoes

NASA Astrophysics Data System (ADS)

Paguican, E. M. R.; Kervyn, M.; Grosse, P.

2016-12-01

The Philippines is an island arc composed of two major blocks: the aseismic Palawan microcontinental block and the Philippine mobile belt. It is bounded by opposing subduction zones, with the left-lateral Philippine Fault running north-south. This setting is ideal for volcano formation and growth, making it one of the best places to study the controls on island arc volcano morphometry and evolution. In this study, we created a database of volcanic edifices and structures identified on the SRTM 30 m digital elevation models (DEM). We computed the morphometry of each edifice using MORVOLC, an IDL code for generating quantitative parameters based on a defined volcano base and DEM. Morphometric results illustrate the large range of sizes and volumes of Philippine volcanoes. Heirarchical classification by principal component analysis distinguishes between large massifs, large cones/sub-cones, small shields/sub-cones, and small cones, based mainly on size (volume, basal width) and steepness (height/basal width ratio, average slopes). Poisson Nearest Neighbor analysis was used to examine the spatial distribution of volcano centroids. Spatial distribution of the different types of volcanoes suggests that large volcanic massifs formed on thickened crust. Although all the volcanic fields and arcs are a response to tectonic activity such as subduction or rifting, only West Luzon, North and South Mindanao, and Eastern Philippines volcanic arcs and Basilan, Macolod, and Maramag volcanic fields present a statistical clustering of volcanic centers. Spatial distribution and preferential alignment of edifices in all volcanic fields confirm that regional structures had some control on their formation. Volcanoes start either as steep cones or as less steep sub-cones and shields. They then grow into large cones, sub-cones and eventually into massifs as eruption focus shifts within the volcano and new eruptive material is deposited on the slopes. Examination of the directions of volcano collapse scars and erosional amphitheater valleys suggests that, during their development, volcano growth is affected by movement of underlying tectonic structures, weight and stability of the growing edifice, structure and composition of the substrata, and intense erosion associated with tropical rainfall.

Jupiter's atmospheric composition from the Cassini thermal infrared spectroscopy experiment

NASA Technical Reports Server (NTRS)

Kunde, V. G.; Flasar, F. M.; Jennings, D. E.; Bezard, B.; Strobel, D. F.; Conrath, B. J.; Nixon, C. A.; Bjoraker, G. L.; Romani, P. N.; Achterberg, R. K.;

Characterization of Protein-Excipient Microheterogeneity in Biopharmaceutical Solid-State Formulations by Confocal Fluorescence Microscopy.

PubMed

Koshari, Stijn H S; Ross, Jean L; Nayak, Purnendu K; Zarraga, Isidro E; Rajagopal, Karthikan; Wagner, Norman J; Lenhoff, Abraham M

2017-02-06

Protein-stabilizer microheterogeneity is believed to influence long-term protein stability in solid-state biopharmaceutical formulations and its characterization is therefore essential for the rational design of stable formulations. However, the spatial distribution of the protein and the stabilizer in a solid-state formulation is, in general, difficult to characterize because of the lack of a functional, simple, and reliable characterization technique. We demonstrate the use of confocal fluorescence microscopy with fluorescently labeled monoclonal antibodies (mAbs) and antibody fragments (Fabs) to directly visualize three-dimensional particle morphologies and protein distributions in dried biopharmaceutical formulations, without restrictions on processing conditions or the need for extensive data analysis. While industrially relevant lyophilization procedures of a model IgG1 mAb generally lead to uniform protein-excipient distribution, the method shows that specific spray-drying conditions lead to distinct protein-excipient segregation. Therefore, this method can enable more definitive optimization of formulation conditions than has previously been possible.

Modelled drift patterns of fish larvae link coastal morphology to seabird colony distribution

PubMed Central

Sandvik, Hanno; Barrett, Robert T.; Erikstad, Kjell Einar; Myksvoll, Mari S.; Vikebø, Frode; Yoccoz, Nigel G.; Anker-Nilssen, Tycho; Lorentsen, Svein-Håkon; Reiertsen, Tone K.; Skarðhamar, Jofrid; Skern-Mauritzen, Mette; Systad, Geir Helge

2016-01-01

Colonial breeding is an evolutionary puzzle, as the benefits of breeding in high densities are still not fully explained. Although the dynamics of existing colonies are increasingly understood, few studies have addressed the initial formation of colonies, and empirical tests are rare. Using a high-resolution larval drift model, we here document that the distribution of seabird colonies along the Norwegian coast can be explained by variations in the availability and predictability of fish larvae. The modelled variability in concentration of fish larvae is, in turn, predicted by the topography of the continental shelf and coastline. The advection of fish larvae along the coast translates small-scale topographic characteristics into a macroecological pattern, viz. the spatial distribution of top-predator breeding sites. Our findings provide empirical corroboration of the hypothesis that seabird colonies are founded in locations that minimize travel distances between breeding and foraging locations, thereby enabling optimal foraging by central-place foragers. PMID:27173005

Shallow Investigations of the Deep Seafloor: Quantitative Morphology in the Levant Basin, Eastern Mediterranean

NASA Astrophysics Data System (ADS)

Kanari, M.; Ketter, T.; Tibor, G.; Schattner, U.

2017-12-01

We aim to characterize the seafloor morphology and its shallow sub-surface structures and deformations in the deep part of the Levant basin (eastern Mediterranean) using recently acquired high-resolution shallow seismic reflection data and multibeam bathymetry, which allow quantitative analysis of morphology and structure. The Levant basin at the eastern Mediterranean is considered a passive continental margin, where most of the recent geological processes were related in literature to salt tectonics rooted at the Messinian deposits from 6Ma. We analyzed two sets of recently acquired high-resolution data from multibeam bathymetry and 3.5 kHz Chirp sub-bottom seismic reflection in the deep basin of the continental shelf offshore Israel (water depths up to 2100 m). Semi-automatic mapping of seafloor features and seismic data interpretation resulted in quantitative morphological analysis of the seafloor and its underlying sediment with penetration depth up to 60 m. The quantitative analysis and its interpretation are still in progress. Preliminary results reveal distinct morphologies of four major elements: channels, faults, folds and sediment waves, validated by seismic data. From the spatial distribution and orientation analyses of these phenomena, we identify two primary process types which dominate the formation of the seafloor in the Levant basin: structural and sedimentary. Characterization of the geological and geomorphological processes forming the seafloor helps to better understand the transport mechanisms and the relations between sediment transport and deposition in deep water and the shallower parts of the shelf and slope.

Directed fusion of cardiac spheroids into larger heterocellular microtissues enables investigation of cardiac action potential propagation via cardiac fibroblasts

PubMed Central

Markes, Alexander R.; Okundaye, Amenawon O.; Qu, Zhilin; Mende, Ulrike; Choi, Bum-Rak

2018-01-01

Multicellular spheroids generated through cellular self-assembly provide cytoarchitectural complexities of native tissue including three-dimensionality, extensive cell-cell contacts, and appropriate cell-extracellular matrix interactions. They are increasingly suggested as building blocks for larger engineered tissues to achieve shapes, organization, heterogeneity, and other biomimetic complexities. Application of these tissue culture platforms is of particular importance in cardiac research as the myocardium is comprised of distinct but intermingled cell types. Here, we generated scaffold-free 3D cardiac microtissue spheroids comprised of cardiac myocytes (CMs) and/or cardiac fibroblasts (CFs) and used them as building blocks to form larger microtissues with different spatial distributions of CMs and CFs. Characterization of fusing homotypic and heterotypic spheroid pairs revealed an important influence of CFs on fusion kinetics, but most strikingly showed rapid fusion kinetics between heterotypic pairs consisting of one CF and one CM spheroid, indicating that CMs and CFs self-sort in vitro into the intermixed morphology found in the healthy myocardium. We then examined electrophysiological integration of fused homotypic and heterotypic microtissues by mapping action potential propagation. Heterocellular elongated microtissues which recapitulate the disproportionate CF spatial distribution seen in the infarcted myocardium showed that action potentials propagate through CF volumes albeit with significant delay. Complementary computational modeling revealed an important role of CF sodium currents and the spatial distribution of the CM-CF boundary in action potential conduction through CF volumes. Taken together, this study provides useful insights for the development of complex, heterocellular engineered 3D tissue constructs and their engraftment via tissue fusion and has implications for arrhythmogenesis in cardiac disease and repair. PMID:29715271

The spatial extent and distribution of star formation in 3D-HST mergers at z ˜ 1.5

NASA Astrophysics Data System (ADS)

Schmidt, Kasper B.; Rix, Hans-Walter; da Cunha, Elisabete; Brammer, Gabriel B.; Cox, Thomas J.; van Dokkum, Pieter; Förster Schreiber, Natascha M.; Franx, Marijn; Fumagalli, Mattia; Jonsson, Patrik; Lundgren, Britt; Maseda, Michael V.; Momcheva, Ivelina; Nelson, Erica J.; Skelton, Rosalind E.; van der Wel, Arjen; Whitaker, Katherine E.

2013-06-01

We present an analysis of the spatial distribution of star formation in a sample of 60 visually identified galaxy merger candidates at z > 1. Our sample, drawn from the 3D-HST survey, is flux limited and was selected to have high star formation rates based on fits of their broad-band, low spatial resolution spectral energy distributions. It includes plausible pre-merger (close pairs) and post-merger (single objects with tidal features) systems, with total stellar masses and star formation rates derived from multiwavelength photometry. Here we use near-infrared slitless spectra from 3D-HST which produce Hα or [O III] emission line maps as proxies for star formation maps. This provides a first comprehensive high-resolution, empirical picture of where star formation occurred in galaxy mergers at the epoch of peak cosmic star formation rate. We find that detectable star formation can occur in one or both galaxy centres, or in tidal tails. The most common case (58 per cent) is that star formation is largely concentrated in a single, compact region, coincident with the centre of (one of) the merger components. No correlations between star formation morphology and redshift, total stellar mass or star formation rate are found. A restricted set of hydrodynamical merger simulations between similarly massive and gas-rich objects implies that star formation should be detectable in both merger components, when the gas fractions of the individual components are the same. This suggests that z ˜ 1.5 mergers typically occur between galaxies whose gas fractions, masses and/or star formation rates are distinctly different from one another.

Differences in aquatic habitat quality as an impact of one- and two-dimensional hydrodynamic model simulated flow variables

NASA Astrophysics Data System (ADS)

Benjankar, R. M.; Sohrabi, M.; Tonina, D.; McKean, J. A.

2013-12-01

Aquatic habitat models utilize flow variables which may be predicted with one-dimensional (1D) or two-dimensional (2D) hydrodynamic models to simulate aquatic habitat quality. Studies focusing on the effects of hydrodynamic model dimensionality on predicted aquatic habitat quality are limited. Here we present the analysis of the impact of flow variables predicted with 1D and 2D hydrodynamic models on simulated spatial distribution of habitat quality and Weighted Usable Area (WUA) for fall-spawning Chinook salmon. Our study focuses on three river systems located in central Idaho (USA), which are a straight and pool-riffle reach (South Fork Boise River), small pool-riffle sinuous streams in a large meadow (Bear Valley Creek) and a steep-confined plane-bed stream with occasional deep forced pools (Deadwood River). We consider low and high flows in simple and complex morphologic reaches. Results show that 1D and 2D modeling approaches have effects on both the spatial distribution of the habitat and WUA for both discharge scenarios, but we did not find noticeable differences between complex and simple reaches. In general, the differences in WUA were small, but depended on stream type. Nevertheless, spatially distributed habitat quality difference is considerable in all streams. The steep-confined plane bed stream had larger differences between aquatic habitat quality defined with 1D and 2D flow models compared to results for streams with well defined macro-topographies, such as pool-riffle bed forms. KEY WORDS: one- and two-dimensional hydrodynamic models, habitat modeling, weighted usable area (WUA), hydraulic habitat suitability, high and low discharges, simple and complex reaches

The Spatial Extent and Distribution of Star Formation in 3D-HST Mergers at z is approximately 1.5

NASA Technical Reports Server (NTRS)

Schmidt, Kasper B.; Rix, Hans-Walter; da Cunha, Elisabete; Brammer, Gabriel B.; Cox, Thomas J.; Van Dokkum, Pieter; Foerster Schreiber, Natascha M.; Franx, Marijn; Fumagalli, Mattia; Jonsson, Patrik;

Mapping the spatial distribution of star formation in cluster galaxies at z ~0.5 with the Grism Lens-Amplified Survey from Space (GLASS)

NASA Astrophysics Data System (ADS)

Vulcani, B.; Treu, T.; Schmidt, K. B.; Poggianti, B. M.; Dressler, A.; Fontana, A.; Bradač, M.; Brammer, G. B.; Hoag, A.; Huang, K.; Malkan, M.; Pentericci, L.; Trenti, M.; von der Linden, A.; Abramson, L.; He, J.; Morris, G.

2016-06-01

What physical processes regulate star formation in dense environments? Understanding why galaxy evolution is environment dependent is one of the key questions of current astrophysics. I will present the first characterization of the spatial distribution of star formation in cluster galaxies at z~0.5, and compare to a field control sample, in order to quantify the role of different physical processes that are believed to be responsible for shutting down star formation (Vulcani et al. 2015, Vulcani et al. in prep). The analysis makes use of data from the Grism Lens-Amplified Survey from Space (GLASS), a large HST cycle-21 program targeting 10 massive galaxy clusters with extensive HST imaging from CLASH and the Frontier Field Initiative. The program consists of 140 primary and 140 parallel orbits of near-infrared WCF3 and optical ACS slitless grism observations, which result in 3D spectroscopy of hundreds of galaxies. The grism data are used to produce spatially resolved maps of the star formation density, while the stellar mass density and optical surface brightness are obtained from multiband imaging. I will describe quantitative measures of the spatial location and extent of the star formation rate. I will show that both in clusters and in the field, Hα is more extended than the rest-frame UV continuum in 60% of the cases, consistent with diffuse star formation and inside out growth. The Hα emission appears more extended in cluster galaxies than in the field, pointing perhaps to ionized gas being stripped and/or star formation being enhanced at large radii. The peak of the Hα emission and that of the continuum are offset by less than 1 kpc. I will also correlate the properties of the Hα maps to the cluster global properties, such as the hot gas density, and the surface mass density. The characterization of the spatial distribution of Halpha provides a new window, yet poorly exploited, on the mechanisms that regulate star formation and morphological transformation in dense environments.

[Life forms of organisms as patterns of organization and spatial ecological factors].

PubMed

Kirpotin, S N

2005-01-01

Tectological and archaetectonical approaches which are conventionally used in morphology are discussed. The similarity of these approaches to some views on the structure and organization of nature systems was shown. These wiews were originated within the framework of the modern system-cybernetic conception. The morphology particularities of natural object of any rank (from organism to biosphere) allow determination of environment influence character. In some cases intensity of the influence can be determined. This, morphological-geometrical approach of nature investigation acquires high prognostic value. The aspects of "pattern organization" concept and its perspectives are discussed. The patterns of organization of organisms could be characterized only in the context of their interactions with environment. Therefore it is necessary to distinguish new group of ecological factors: spatial or chorological one. It was suggested that spatial ecological factors is predominant if all other physical factors have no extreme values.

Spatial distribution of FIR rotationally excited CH+ and OH emission lines in the Orion Bar PDR⋆

PubMed Central

Parikka, A.; Habart, E.; Bernard-Salas, J.; Goicoechea, J. R.; Abergel, A.; Pilleri, P.; Dartois, E.; Joblin, C.; Gerin, M.; Godard, B.

2016-01-01

Context The methylidyne cation (CH+) and hydroxyl (OH) are key molecules in the warm interstellar chemistry, but their formation and excitation mechanisms are not well understood. Their abundance and excitation are predicted to be enhanced by the presence of vibrationally excited H2 or hot gas (~500–1000 K) in photodissociation regions with high incident FUV radiation field. The excitation may also originate in dense gas (> 105 cm−3) followed by nonreactive collisions with H2, H, and electrons. Previous observations of the Orion Bar suggest that the rotationally excited CH+ and OH correlate with the excited CO, a tracer of dense and warm gas, and formation pumping contributes to CH+ excitation. Aims Our goal is to examine the spatial distribution of the rotationally excited CH+ and OH emission lines in the Orion Bar in order to establish their physical origin and main formation and excitation mechanisms. Methods We present spatially sampled maps of the CH+ J=3-2 transition at 119.8 µm and the OH Λ-doublet at 84 µm in the Orion Bar over an area of 110″×110″ with Herschel (PACS). We compare the spatial distribution of these molecules with those of their chemical precursors, C+, O and H2, and tracers of warm and dense gas (high-J CO). We assess the spatial variation of CH+ J=2-1 velocity-resolved line profile at 1669 GHz with Herschel HIFI spectrometer observations. Results The OH and especially CH+ lines correlate well with the high-J CO emission and delineate the warm and dense molecular region at the edge of the Bar. While notably similar, the differences in the CH+ and OH morphologies indicate that CH+ formation and excitation are strongly related to the observed vibrationally excited H2. This, together with the observed broad CH+ line widths, indicates that formation pumping contributes to the excitation of this reactive molecular ion. Interestingly, the peak of the rotationally excited OH 84 µm emission coincides with a bright young object, proplyd 244-440, which shows that OH can be an excellent tracer of UV-irradiated dense gas. Conclusions The spatial distribution of CH+ and OH revealed in our maps is consistent with previous modeling studies. Both formation pumping and nonreactive collisions in a UV-irradiated dense gas are important CH+ J=3-2 excitation processes. The excitation of the OH Λ-doublet at 84 µm is mainly sensitive to the temperature and density. PMID:28260804

Characterizing Englacial Attenuation and Grounding Zone Geometry Using Airborne Radar Sounding

NASA Astrophysics Data System (ADS)

Schroeder, D. M.; Grima, C.; Blankenship, D. D.

2014-12-01

The impact of warm ocean water on ice sheet retreat and stability is a one of the primary drivers and sources of uncertainty for the rate of global sea level rise. One critical but challenging observation required to understand and model this impact is the location and extent of grounding ice sheet zones. However, existing surface topography based techniques do not directly detect the location where ocean water reaches (or breaches) grounded ice at the bed, which can significantly affect ice sheet stability. The primary geophysical tool for directly observing the basal properties of ice sheets is airborne radar sounding. However, uncertainty in englacial attenuation from unknown ice temperature and chemistry can lead to erroneous interpretation of subglacial conditions from bed echo strengths alone . Recently developed analysis techniques for radar sounding data have overcome this challenge by taking advantage of information in the angular distribution of bed echo energy and joint modeling of radar returns and water routing. We have developed similar approaches to analyze the spatial pattern and character of echoes to address the problems of improved characterization of grounding zone geometry and englacial attenuation. The spatial signal of the transition from an ice-bed interface to an ice-ocean interface is an increase in bed echo strength. However, rapidly changing attenuation near the grounding zone prevents the unambiguous interpretation of this signal in typical echo strength profiles and violates the assumptions of existing empirical attenuation correction techniques. We present a technique that treat bed echoes as continuous signals to take advantage of along-profile ice thickness and echo strength variations to constrain the spatial pattern of attenuation and detect the grounding zone transition. The transition from an ice-bed interface to an ice-ocean interface will also result in a change in the processes that determine basal interface morphology (e.g. melt/freeze processes for floating ice vs. erosion/deformation processes for grounded ice). This morphology change will be expressed in the angular distribution and coherency of bed echo energy. We also present techniques that exploit this character of bed echoes to further improve the detection and characterization of grounding zones.

Morphological Changes Along a Dike Landside Slope Sampled by 4d High Resolution Terrestrial Laser Scanning

NASA Astrophysics Data System (ADS)

Herrero-Huertaa, Mónica; Lindenbergh, Roderik; Ponsioen, Luc; van Damme, Myron

2016-06-01

Emergence of light detection and ranging (LiDAR) technology provides new tools for geomorphologic studies improving spatial and temporal resolution of data sampling hydrogeological instability phenomena. Specifically, terrestrial laser scanning (TLS) collects high resolution 3D point clouds allowing more accurate monitoring of erosion rates and processes, and thus, quantify the geomorphologic change on vertical landforms like dike landside slopes. Even so, TLS captures observations rapidly and automatically but unselectively. In this research, we demonstrate the potential of TLS for morphological change detection, profile creation and time series analysis in an emergency simulation for characterizing and monitoring slope movements in a dike. The experiment was performed near Schellebelle (Belgium) in November 2015, using a Leica Scan Station C10. Wave overtopping and overflow over a dike were simulated whereby the loading conditions were incrementally increased and 14 successful scans were performed. The aim of the present study is to analyse short-term morphological dynamic processes and the spatial distribution of erosion and deposition areas along a dike landside slope. As a result, we are able to quantify the eroded material coming from the impact on the terrain induced by wave overtopping which caused the dike failure in a few minutes in normal storm scenarios (Q = 25 l/s/m) as 1.24 m3. As this shows that the amount of erosion is measurable using close range techniques; the amount and rate of erosion could be monitored to predict dike collapse in emergency situation. The results confirm the feasibility of the proposed methodology, providing scalability to a comprehensive analysis over a large extension of a dike (tens of meters).

Mesoscale behavior study of collector aggregations in a wet dust scrubber.

PubMed

Li, Xiaochuan; Wu, Xiang; Hu, Haibin; Jiang, Shuguang; Wei, Tao; Wang, Dongxue

2018-01-01

In order to address the bottleneck problem of low fine-particle removal efficiency of self-excited dust scrubbers, this paper is focused on the influence of the intermittent gas-liquid two-phase flow on the mesoscale behavior of collector aggregations. The latter is investigated by the application of high-speed dynamic image technology to the self-excited dust scrubber experimental setup. The real-time-scale monitoring of the dust removal process is provided to clarify its operating mechanism at the mesoscale level. The results obtained show that particulate capturing in self-excited dust scrubber is provided by liquid droplets, liquid films/curtains, bubbles, and their aggregations. Complex spatial and temporal structures are intrinsic to each kind of collector morphology, and these are considered as the major factors controlling the dust removal mechanism of self-excited dust scrubbers. For the specific parameters of gas-liquid two-phase flow under study, the evolution patterns of particular collectors reflect the intrinsic, intermittent, and complex characteristics of the temporal structure. The intermittent initiation of the collector and the air hole formation-collapse cyclic processes provide time and space for the fine dust to escape from being trapped by the collectors. The above mesoscale experimental data provide more insight into the factors reducing the dust removal efficiency of self-excited dust scrubbers. This paper focuses on the reconsideration of the capturer aggregations of self-excited dust scrubbers from the mesoscale. Complex structures in time and space scales exist in each kind of capturer morphology. With changes of operating parameters, the morphology and spatial distributions of capturers diversely change. The change of the capturer over time presents remarkable, intermittent, and complex characteristics of the temporal structure.

Hybrid zone formation and contrasting outcomes of secondary contact over transects in common toads.

PubMed

Arntzen, Jan W; de Vries, Wouter; Canestrelli, Daniele; Martínez-Solano, Iñigo

2017-10-01

Much progress in speciation research stems from documenting patterns of morphological and genetic variation in hybrid zones. Contrasting patterns of marker introgression in different sections of the contact can provide valuable insights on the relative importance of various evolutionary mechanisms maintaining species differences in the face of hybridization and gene flow and on hybrid zone temporal and spatial dynamics. We studied species interactions in the common toads Bufo bufo and B. spinosus in France and northwestern Italy using morphological and molecular data from the mitochondrial and nuclear genomes in an extensive survey, including two independent transects west and east of the Alps. At both, we found sharp, coincident and concordant nuclear genetic transitions. However, morphological clines were wider or absent and mtDNA introgression was asymmetric. We discuss alternative, nonexclusive hypotheses about evolutionary processes generating these patterns, including drift, selection, long-distance dispersal and spatial shifts in hybrid zone location and structure. The distribution of intraspecific mtDNA lineages supports a scenario in which B. bufo held a local refugium during the last glacial maximum. Present-day genetic profiles are best explained by an advance of B. spinosus from a nearby Iberian refugium, largely superseding the local B. bufo population, followed by an advance of B. bufo from the Balkans, with prongs north and south of the Alps, driving B. spinosus southwards. A pendulum moving hybrid zone, first northwards and then southwards, explains the wide areas of introgression at either side of the current position of the contact zones. © 2017 The Authors. Molecular Ecology Published by John Wiley & Sons Ltd.

The Urban Fabric of the City as Its Affects Thermal Energy Responses Derived from Remote Sensing Data

NASA Technical Reports Server (NTRS)

Quattrochi, Dale A.; Luvall, Jeffrey C.; Estes, Maurice G., Jr.

2000-01-01

The physical geography of the city affects numerous aspects of its interlinked biophysical, social, and land-atmosphere characteristics - those attributes that come together to form the total urban environment. One approach to studying the multitude of interactions that occur as a result of urbanization is to view the city from a systems ecology perspective, where energy and material cycle into and out of the urban milieu. Thus, the urban ecosystem is synergistic in linking land, air, water, and living organisms in a vast network of interrelated physical, human, and biological process. Given the number and the shear complexity of the exchanges and, ultimately, their effects, that occur within the urban environment, we are focusing our research on looking at how the morphology or urban fabric of the city, drives thermal energy exchanges across the urban landscape. The study of thermal energy attributes for different cities provides insight into how thermal fluxes and characteristics are partitioned across the city landscape in response to each city's morphology. We are using thermal infrared remote sensing data obtained at a high spatial resolution from aircraft, along with satellite data, to identify and quantify thermal energy characteristics for 4 U.S. cities: Atlanta, GA, Baton Rouge, LA, Salt Lake City, UT, and Sacramento, CA. Analysis of how thermal energy is spatially distributed across the urban landscapes for these cities provides a unique perspective for understanding how the differing morphology of cities forces land-atmosphere exchanges, such as the urban heat island effect, as well as related meteorological and air quality interactions. Keyword: urban ecosystems, remote sensing, urban heat island

New evidence on the spatiotemporal distribution and evolution of the Uto-Aztecan premolar.

PubMed

Johnson, Kent M; Stojanowski, Christopher M; Miyar, Kathryn O'D; Doran, Glen H; Ricklis, Robert A

2011-11-01

Uto-Aztecan premolar (UAP) is a rare morphological feature of the maxillary first premolar that occurs in Native American populations with frequencies ranging 0-16.7%. A recent summary of UAP by Delgado-Burbano et al. (2010) suggests the trait evolved around 4,000 BP in the American Southwest where the earliest cases occur and where the trait exists at the highest frequencies among contemporary populations. In this article, we present new data on UAP prevalence from an Archaic North American sample from Buckeye Knoll, Texas (circa 7,500-6,200 cal BP). Buckeye Knoll preserves a single case of UAP, and a sample frequency of 3.6%. In addition, we confirm the presence of UAP in other eastern North American Archaic skeletal samples from the Windover and Harris Creek at Tick Island sites in Florida. We also review the dental morphological literature to assess: 1) whether UAP prevalence is limited to New World populations, and 2) whether the trait's antiquity can be extended further into the Early Holocene Paleoindian period. Additional cases of UAP are presented from the Pacific coast of South America, Europe, Asia, and Australia. Combined, these data greatly expand the spatial and temporal distribution of UAP and suggest the trait evolved considerably earlier than previously thought. Copyright © 2011 Wiley-Liss, Inc.

Slowly dispersing neotenic beetles can speciate on a penny coin and generate space-limited diversity in the tropical mountains

NASA Astrophysics Data System (ADS)

Bray, Timothy C.; Bocak, Ladislav

2016-09-01

We demonstrate the controversial origin of a biological species within an area of a few kilometres in the absence of physical barriers. We employed nuclear rRNA/mitochondrial and genome-wide SNP approaches to infer relationships of four species of net-winged beetles characterised by female neoteny. Three species are distributed at low elevations and a single population colonised a 40 km2 highland plateau and established distinct biological species despite incomplete genetic isolation. The speciation process is extreme in the highly localised spatial scale, due to the low dispersal power of neotenics, and provides clear support for a microallopatric model based on ecological conditions. In contrast with neutral evolution in a homogenous environment, as demonstrated by the genetic divergence and morphological similarity of two widely distributed low-mountain species, the environmental characteristics of the high-mountain plateau led to the origin of a species adapted to the local mimetic pattern and characterised by morphologically distinct genitalia. We conclude that the low dispersal propensity promotes neutral genetic differentiation in the first stage, but environmental characteristics play an important role the final phase of the speciation process. The unexpected speciation at such an extreme geographic scale points to the in situ origin and uniqueness of the mountain fauna.

A climate for speciation: rapid spatial diversification within the Sorex cinereus complex of shrews

USGS Publications Warehouse

Hope, Andrew G.; Speer, Kelly A.; Demboski, John R.; Talbot, Sandra L.; Cook, Joseph A.

2012-01-01

The cyclic climate regime of the late Quaternary caused dramatic environmental change at high latitudes. Although these events may have been brief in periodicity from an evolutionary standpoint, multiple episodes of allopatry and divergence have been implicated in rapid radiations of a number of organisms. Shrews of the Sorex cinereus complex have long challenged taxonomists due to similar morphology and parapatric geographic ranges. Here, multi-locus phylogenetic and demographic assessments using a coalescent framework were combined to investigate spatiotemporal evolution of 13 nominal species with a widespread distribution throughout North America and across Beringia into Siberia. For these species, we first test a hypothesis of recent differentiation in response to Pleistocene climate versus more ancient divergence that would coincide with pre-Pleistocene perturbations. We then investigate the processes driving diversification over multiple continents. Our genetic analyses highlight novel diversity within these morphologically conserved mammals and clarify relationships between geographic distribution and evolutionary history. Demography within and among species indicates both regional stability and rapid expansion. Ancestral ecological differentiation coincident with early cladogenesis within the complex enabled alternating and repeated episodes of allopatry and expansion where successive glacial and interglacial phases each promoted divergence. The Sorex cinereus complex constitutes a valuable model for future comparative assessments of evolution in response to cyclic environmental change.

Characterization of multifocal T2*-weighted MRI hypointensities in the basal ganglia of elderly, community-dwelling subjects☆

PubMed Central

Glatz, Andreas; Valdés Hernández, Maria C.; Kiker, Alexander J.; Bastin, Mark E.; Deary, Ian J.; Wardlaw, Joanna M.

2013-01-01

Multifocal T2*-weighted (T2*w) hypointensities in the basal ganglia, which are believed to arise predominantly from mineralized small vessels and perivascular spaces, have been proposed as a biomarker for cerebral small vessel disease. This study provides baseline data on their appearance on conventional structural MRI for improving and automating current manual segmentation methods. Using a published thresholding method, multifocal T2*w hypointensities were manually segmented from whole brain T2*w volumes acquired from 98 community-dwelling subjects in their early 70s. Connected component analysis was used to derive the average T2*w hypointensity count and load per basal ganglia nucleus, as well as the morphology of their connected components, while nonlinear spatial probability mapping yielded their spatial distribution. T1-weighted (T1w), T2-weighted (T2w) and T2*w intensity distributions of basal ganglia T2*w hypointensities and their appearance on T1w and T2w MRI were investigated to gain further insights into the underlying tissue composition. In 75/98 subjects, on average, 3 T2*w hypointensities with a median total volume per intracranial volume of 50.3 ppm were located in and around the globus pallidus. Individual hypointensities appeared smooth and spherical with a median volume of 12 mm3 and median in-plane area of 4 mm2. Spatial probability maps suggested an association between T2*w hypointensities and the point of entry of lenticulostriate arterioles into the brain parenchyma. T1w and T2w and especially the T2*w intensity distributions of these hypointensities, which were negatively skewed, were generally not normally distributed indicating an underlying inhomogeneous tissue structure. Globus pallidus T2*w hypointensities tended to appear hypo- and isointense on T1w and T2w MRI, whereas those from other structures appeared iso- and hypointense. This pattern could be explained by an increased mineralization of the globus pallidus. In conclusion, the characteristic spatial distribution and appearance of multifocal basal ganglia T2*w hypointensities in our elderly cohort on structural MRI appear to support the suggested association with mineralized proximal lenticulostriate arterioles and perivascular spaces. PMID:23769704

Regular Topographic Patterning of Karst Depressions Suggests Landscape Self-Organization

NASA Astrophysics Data System (ADS)

Quintero, C.; Cohen, M. J.

2017-12-01

Thousands of wetland depressions that are commonly host to cypress domes dot the sub-tropical limestone landscape of South Florida. The origin of these depression features has been the topic of debate. Here we build upon the work of previous surveyors of this landscape to analyze the morphology and spatial distribution of depressions on the Big Cypress landscape. We took advantage of the emergence and availability of high resolution Light Direction and Ranging (LiDAR) technology and ArcMap GIS software to analyze the structure and regularity of landscape features with methods unavailable to past surveyors. Six 2.25 km2 LiDAR plots within the preserve were selected for remote analysis and one depression feature within each plot was selected for more intensive sediment and water depth surveying. Depression features on the Big Cypress landscape were found to show strong evidence of regular spatial patterning. Periodicity, a feature of regularly patterned landscapes, is apparent in both Variograms and Radial Spectrum Analyses. Size class distributions of the identified features indicate constrained feature sizes while Average Nearest Neighbor analyses support the inference of dispersed features with non-random spacing. The presence of regular patterning on this landscape strongly implies biotic reinforcement of spatial structure by way of the scale dependent feedback. In characterizing the structure of this wetland landscape we add to the growing body of work dedicated to documenting how water, life and geology may interact to shape the natural landscapes we see today.

An analytical method for assessing the spatial and temporal variation of juvenile Atlantic salmon habitat in an upland Scottish river.

NASA Astrophysics Data System (ADS)

Buddendorf, B.; Fabris, L.; Malcolm, I.; Lazzaro, G.; Tetzlaff, D.; Botter, G.; Soulsby, C.

2016-12-01

Wild Atlantic salmon populations in Scottish rivers constitute an important economic and recreational resource, as well as being a key component of biodiversity. Salmon have specific habitat requirements at different life stages and their distribution is therefore strongly influenced by a complex suite of biological and physical controls. Stream hydrodynamics have a strong influence on habitat quality and affect the distribution and density of juvenile salmon. As stream hydrodynamics directly relate to stream flow variability and channel morphology, the effects of hydroclimatic drivers on the spatial and temporal variability of habitat suitability can be assessed. Critical Displacement Velocity (CDV), which describes the velocity at which fish can no longer hold station, is one potential approach for characterising habitat suitability. CDV is obtained using an empirical formula that depends on fish size and stream temperature. By characterising the proportion of a reach below CDV it is possible to assess the suitable area. We demonstrate that a generic analytical approach based on field survey and hydraulic modelling can provide insights on the interactions between flow regime and average suitable area (SA) for juvenile salmon that could be extended to other aquatic species. Analytical functions are used to model the pdf of stream flow p(q) and the relationship between flow and suitable area SA(q). Theoretically these functions can assume any form. Here we used a gamma distribution to model p(q) and a gamma function to model SA(q). Integrating the product of these functions we obtain an analytical expression of SA. Since parameters of p(q) can be estimated from meteorological and flow measurements, they can be used directly to predict the effect of flow regime on SA. We show the utility of the approach with reference to 6 electrofishing sites in a single river system where long term (50 years) data on spatially distributed juvenile salmon densities are available.

The impacts of Segura River (Spain) channelization on the coastal seabed.

PubMed

Aragonés, L; Pagán, J I; López, M P; García-Barba, J

2016-02-01

Human actions over rivers and coasts have generated great changes along seaboard. In order to know future development of those changes, it is necessary to understand the development of the coast during the past. When there is a complex morphologic system as a result of the combination of natural elements with human construction elements, the study of the abovementioned changes requires a wider perspective than the one provided by traditional two-dimensional methods. Thus, the Geographic Information Systems (GIS) become a suitable tool for that kind of studies. In this work, GIS are used to understand changes in bathymetry, sediments properties and transport, as well as surface variations of plant species occurred in the Segura River mouth (Spain) within a period of 17 years due to the channelization of the river low course. The methodology followed here implies the integration of data coming from different sources and with different formats in a GIS, what allows for a spatial analysis. Results obtained show the grain-size spatial distribution for every period of time studied, as well as bathymetry changes and seabed morphology. It can be concluded that the construction works carried out in the riverbed have affected sediment grain-size in the area. Clays have nearly disappeared and consequently there is a descent of seabed level that affects plant species, such as Posidonia oceanica. Copyright © 2015 Elsevier B.V. All rights reserved.

High-spatial-resolution mapping of the oxygen concentration in cortical tissue (Conference Presentation)

NASA Astrophysics Data System (ADS)

Jaswal, Rajeshwer S.; Yaseen, Mohammad A.; Fu, Buyin; Boas, David A.; Sakadžic, Sava

2016-03-01

Due to a lack of imaging tools for high-resolution imaging of cortical tissue oxygenation, the detailed maps of the oxygen partial pressure (PO2) around arterioles, venules, and capillaries remain largely unknown. Therefore, we have limited knowledge about the mechanisms that secure sufficient oxygen delivery in microvascular domains during brain activation, and provide some metabolic reserve capacity in diseases that affect either microvascular networks or the regulation of cerebral blood flow (CBF). To address this challenge, we applied a Two-Photon PO2 Microscopy to map PO2 at different depths in mice cortices. Measurements were performed through the cranial window in the anesthetized healthy mice as well as in the mouse models of microvascular dysfunctions. In addition, microvascular morphology was recorded by the two-photon microscopy at the end of each experiment and subsequently segmented. Co-registration of the PO2 measurements and exact microvascular morphology enabled quantification of the tissue PO2 dependence on distance from the arterioles, capillaries, and venules at various depths. Our measurements reveal significant spatial heterogeneity of the cortical tissue PO2 distribution that is dominated by the high oxygenation in periarteriolar spaces. In cases of impaired oxygen delivery due to microvascular dysfunction, significant reduction in tissue oxygenation away from the arterioles was observed. These tissue domains may be the initial sites of cortical injury that can further exacerbate the progression of the disease.

Virtual Embryo: Cell-Agent Based Modeling of Developmental Processes and Toxicities (CSS BOSC)

EPA Science Inventory

Spatial regulation of cellular dynamics is fundamental to morphological development. As such, chemical disruption of spatial dynamics is a determinant of developmental toxicity. Incorporating spatial dynamics into AOPs for developmental toxicity is desired but constrained by the ...

Structural features of resorcinol-formaldehyde resin chars and interfacial behavior of water co-adsorbed with low-molecular weight organics

NASA Astrophysics Data System (ADS)

Gun'ko, Vladimir M.; Bogatyrov, Viktor M.; Turov, Vladimir V.; Leboda, Roman; Skubiszewska-Zięba, Jadwiga; Urubkov, Iliya V.

2013-10-01

Products of resorcinol-formaldehyde resin carbonization (chars) are characterized by different morphology (particle shape and sizes) and texture (specific surface area, pore volume and pore size distribution) depending on water content during resin polymerization. At a low amount of water (Cw = 37.8 wt.%) during synthesis resulting in strongly cross-linked polymers, carbonization gives nonporous particles. An increase in the water content to 62.7 wt.% results in a nano/mesoporous char, but if Cw = 73.3 wt.%, a char is purely nanoporous. Despite these textural differences, the Raman spectra of all the chars are similar because of the similarity in the structure of their carbon sheets with a significant contribution of sp3 C atoms. However, the difference in the spatial organization of the carbon sheet stacks in the particles results in the significant differences in the textural and morphological characteristics and in the adsorption properties of chars with respect to water, methane, benzene, hydrogen, methylene chloride, and dimethylsulfoxide.

Three-dimensional mapping of crystalline ceramic waste form materials

DOE Office of Scientific and Technical Information (OSTI.GOV)

Cocco, Alex P.; DeGostin, Matthew B.; Wrubel, Jacob A.

Here, we demonstrate the use of synchrotron-based, transmission X-ray microscopy (TXM) and scanning electron microscopy to image the 3-D morphologies and spatial distributions of Ga-doped phases within model, single- and two-phase waste form material systems. Gallium doping levels consistent with those commonly used for nuclear waste immobilization (e.g., Ba 1.04Cs 0.24Ga 2.32Ti 5.68O 16) could be readily imaged. This analysis suggests that a minority phase with different stoichiometry/composition from the primary hollandite phase can be formed by the solid-state ceramic processing route with varying morphology (globular vs. cylindrical) as a function of Cs content. Our results represent a crucial stepmore » in developing the tools necessary to gain an improved understanding of the microstructural and chemical properties of waste form materials that influence their resistance to aqueous corrosion. This understanding will aid in the future design of higher durability waste form materials.« less

Three-dimensional mapping of crystalline ceramic waste form materials

DOE PAGES

Cocco, Alex P.; DeGostin, Matthew B.; Wrubel, Jacob A.; ...

2017-04-21

Here, we demonstrate the use of synchrotron-based, transmission X-ray microscopy (TXM) and scanning electron microscopy to image the 3-D morphologies and spatial distributions of Ga-doped phases within model, single- and two-phase waste form material systems. Gallium doping levels consistent with those commonly used for nuclear waste immobilization (e.g., Ba 1.04Cs 0.24Ga 2.32Ti 5.68O 16) could be readily imaged. This analysis suggests that a minority phase with different stoichiometry/composition from the primary hollandite phase can be formed by the solid-state ceramic processing route with varying morphology (globular vs. cylindrical) as a function of Cs content. Our results represent a crucial stepmore » in developing the tools necessary to gain an improved understanding of the microstructural and chemical properties of waste form materials that influence their resistance to aqueous corrosion. This understanding will aid in the future design of higher durability waste form materials.« less

Hydrate morphology: Physical properties of sands with patchy hydrate saturation

USGS Publications Warehouse

Dai, S.; Santamarina, J.C.; Waite, William F.; Kneafsey, T.J.

2012-01-01

The physical properties of gas hydrate-bearing sediments depend on the volume fraction and spatial distribution of the hydrate phase. The host sediment grain size and the state of effective stress determine the hydrate morphology in sediments; this information can be used to significantly constrain estimates of the physical properties of hydrate-bearing sediments, including the coarse-grained sands subjected to high effective stress that are of interest as potential energy resources. Reported data and physical analyses suggest hydrate-bearing sands contain a heterogeneous, patchy hydrate distribution, whereby zones with 100% pore-space hydrate saturation are embedded in hydrate-free sand. Accounting for patchy rather than homogeneous hydrate distribution yields more tightly constrained estimates of physical properties in hydrate-bearing sands and captures observed physical-property dependencies on hydrate saturation. For example, numerical modeling results of sands with patchy saturation agree with experimental observation, showing a transition in stiffness starting near the series bound at low hydrate saturations but moving toward the parallel bound at high hydrate saturations. The hydrate-patch size itself impacts the physical properties of hydrate-bearing sediments; for example, at constant hydrate saturation, we find that conductivity (electrical, hydraulic and thermal) increases as the number of hydrate-saturated patches increases. This increase reflects the larger number of conductive flow paths that exist in specimens with many small hydrate-saturated patches in comparison to specimens in which a few large hydrate saturated patches can block flow over a significant cross-section of the specimen.

Detection of tumorigenesis in urinary bladder with optical coherence tomography: optical characterization of morphological changes

NASA Astrophysics Data System (ADS)

Xie, T.-Q.; Zeidel, M. L.; Pan, Yingtian

2002-12-01

Most transitional cell tumorigenesis involves three stages of subcellular morphological changes: hyperplasia, dysplasia and neoplasia. Previous studies demonstrated that owing to its high spatial resolution and intermediate penetration depth, current OCT technology including endoscopic OCT could delineate the urothelium, submucosa and the upper muscular layers of the bladder wall. In this paper, we will discuss the sensitivity and limitations of OCT in diagnosing and staging bladder cancer. Based on histomorphometric evaluations of nuclear morphology, we modeled the resultant backscattering changes and the characteristic changes in OCT image contrast. In the theoretical modeling, we assumed that nuclei were the primary sources of scattering and were uniformly distributed in the uroepithelium, and compared with the results of the corresponding prior OCT measurements. According to our theoretical modeling, normal bladder shows a thin, uniform and low scattering urothelium, so does an inflammatory lesion except thickening in the submucosa. Compared with a normal bladder, a hyperplastic lesion exhibits a thickened, low scattering urothelium whereas a neoplastic lesion shows a thickened urothelium with increased backscattering. These results support our previous animal study that OCT has the potential to differentiate inflammation, hyperplasia, and neoplasia by quantifying the changes in urothelial thickening and backscattering. The results also suggest that OCT might not have the sensitivity to differentiate the subtle morphological changes between hyperplasia and dysplasia based on minor backscattering differences.

Morphological response to competition for light in the clonal Trifolium repens (Fabaceae).

PubMed

Bittebiere, Anne-Kristel; Renaud, Nolwenn; Clément, Bernard; Mony, Cendrine

2012-04-01

Plant communities in temperate zones are dominated by clonal plants that can plastically modify their growth characteristics in response to competition. Given that plants compete with one another, and the implications this has for species coexistence, we conducted a study to assess how clonal species morphologically respond to competition for light depending on its intensity and heterogeneity, which are determined by the competitor species. We assessed the morphological response to competition for light of the clonal species Trifolium repens L. by measuring its growth performance, and vertical and horizontal growth traits. We used five competitive environments, i.e., one without competitor and four differing by their competitor species creating different conditions of competition intensity and heterogeneity. The morphological response of Trifolium repens to competition for light depended on the competitor identity. Competition intensity and heterogeneity, determined by competitor identity, had an interactive effect on most traits. The increase in petiole elongation and specific leaf area due to increased competition intensity was observed only at low to intermediate competition heterogeneity. Competition heterogeneity promoted the elongation of clone connections allowing space exploration. Our results demonstrated that the intensity and heterogeneity of competition, which depended on competitor identity, are of primary importance in determining the plastic response of Trifolium repens. This emphasizes that it is important to consider the fine-scale spatial distribution of individuals when studying their interactions within plant communities.

Detection of tumorigenesis in urinary bladder with optical coherence tomography: optical characterization of morphological changes.

PubMed

Xie, T; Zeidel, M; Pan, Yingtian

2002-12-02

Most transitional cell tumorigenesis involves three stages of subcellular morphological changes: hyperplasia, dysplasia and neoplasia. Previous studies demonstrated that owing to its high spatial resolution and intermediate penetration depth, current OCT technology including endoscopic OCT could delineate the urothelium, submucosa and the upper muscular layers of the bladder wall. In this paper, we will discuss the sensitivity and limitations of OCT in diagnosing and staging bladder cancer. Based on histomorphometric evaluations of nuclear morphology, we modeled the resultant backscattering changes and the characteristic changes in OCT image contrast. In the theoretical modeling, we assumed that nuclei were the primary sources of scattering and were uniformly distributed in the uroepithelium, and compared with the results of the corresponding prior OCT measurements. According to our theoretical modeling, normal bladder shows a thin, uniform and low scattering urothelium, so does an inflammatory lesion except thickening in the submucosa. Compared with a normal bladder, a hyperplastic lesion exhibits a thickened, low scattering urothelium whereas a neoplastic lesion shows a thickened urothelium with increased backscattering. These results support our previous animal study that OCT has the potential to differentiate inflammation, hyperplasia, and neoplasia by quantifying the changes in urothelial thickening and backscattering. The results also suggest that OCT might not have the sensitivity to differentiate the subtle morphological changes between hyperplasia and dysplasia based on minor backscattering differences.

Paving the seafloor: Volcanic emplacement processes during the 2005-2006 eruptions at the fast spreading East Pacific Rise, 9°50‧N

NASA Astrophysics Data System (ADS)

Fundis, A. T.; Soule, S. A.; Fornari, D. J.; Perfit, M. R.

2010-08-01

The 2005-2006 eruptions near 9°50'N at the East Pacific Rise (EPR) marked the first observed repeat eruption at a mid-ocean ridge and provided a unique opportunity to deduce the emplacement dynamics of submarine lava flows. Since these new flows were documented in April 2006, a total of 40 deep-towed imaging surveys have been conducted with the Woods Hole Oceanographic Institution's (WHOI) TowCam system. More than 60,000 digital color images and high-resolution bathymetric profiles of the 2005-2006 flows from the TowCam surveys were analyzed for lava flow morphology and for the presence of kipukas, collapse features, faults and fissures. We use these data to quantify the spatial distributions of lava flow surface morphologies and to investigate how they relate to the physical characteristics of the ridge crest, such as seafloor slope, and inferred dynamics of flow emplacement. We conclude that lava effusion rate was the dominant factor controlling the observed morphological variations in the 2005-2006 flows. We also show that effusion rates were higher than in previously studied eruptions at this site and varied systematically along the length of the eruptive fissure. This is the first well-documented study in which variations in seafloor lava morphology can be directly related to a well documented ridge-crest eruption where effusion rate varied significantly.

CHARACTERIZATION OF THE COMPLETE FIBER NETWORK TOPOLOGY OF PLANAR FIBROUS TISSUES AND SCAFFOLDS

PubMed Central

D'Amore, Antonio; Stella, John A.; Wagner, William R.; Sacks, Michael S.

2010-01-01

Understanding how engineered tissue scaffold architecture affects cell morphology, metabolism, phenotypic expression, as well as predicting material mechanical behavior have recently received increased attention. In the present study, an image-based analysis approach that provides an automated tool to characterize engineered tissue fiber network topology is presented. Micro-architectural features that fully defined fiber network topology were detected and quantified, which include fiber orientation, connectivity, intersection spatial density, and diameter. Algorithm performance was tested using scanning electron microscopy (SEM) images of electrospun poly(ester urethane)urea (ES-PEUU) scaffolds. SEM images of rabbit mesenchymal stem cell (MSC) seeded collagen gel scaffolds and decellularized rat carotid arteries were also analyzed to further evaluate the ability of the algorithm to capture fiber network morphology regardless of scaffold type and the evaluated size scale. The image analysis procedure was validated qualitatively and quantitatively, comparing fiber network topology manually detected by human operators (n=5) with that automatically detected by the algorithm. Correlation values between manual detected and algorithm detected results for the fiber angle distribution and for the fiber connectivity distribution were 0.86 and 0.93 respectively. Algorithm detected fiber intersections and fiber diameter values were comparable (within the mean ± standard deviation) with those detected by human operators. This automated approach identifies and quantifies fiber network morphology as demonstrated for three relevant scaffold types and provides a means to: (1) guarantee objectivity, (2) significantly reduce analysis time, and (3) potentiate broader analysis of scaffold architecture effects on cell behavior and tissue development both in vitro and in vivo. PMID:20398930

[Effects of tree species diversity on fine-root biomass and morphological characteristics in subtropical Castanopsis carlesii forests].

PubMed

Wang, Wei-Wei; Huang, Jin-Xue; Chen, Feng; Xiong, De-Cheng; Lu, Zheng-Li; Huang, Chao-Chao; Yang, Zhi-Jie; Chen, Guang-Shui

2014-02-01

Fine roots in the Castanopsis carlesii plantation forest (MZ), the secondary forest of C. carlesii through natural regeneration with anthropogenic promotion (AR), and the secondary forest of C. carlesii through natural regeneration (NR) in Sanming City, Fujian Province, were estimated by soil core method to determine the influence of tree species diversity on biomass, vertical distribution and morphological characteristics of fine roots. The results showed that fine root biomass for the 0-80 cm soil layer in the MZ, AR and NR were (182.46 +/- 10.81), (242.73 +/- 17.85) and (353.11 +/- 16.46) g x m(-2), respectively, showing an increased tendency with increasing tree species diversity. In the three forests, fine root biomass was significantly influenced by soil depth, and fine roots at the 0-10 cm soil layer accounted for more than 35% of the total fine root biomass. However, the interaction of stand type and soil depth on fine-root distribution was not significant, indicating no influence of tree species diversity on spatial niche segregation in fine roots. Root surface area density and root length density were the highest in NR and lowest in the MZ. Specific root length was in the order of AR > MZ > NR, while specific root surface area was in the order of NR > MZ > AR. There was no significant interaction of stand type and soil depth on specific root length and specific root surface area. Fine root morphological plasticity at the stand level had no significant response to tree species diversity.

The role of selection and historical factors in driving population differentiation along an elevational gradient in an island bird.

PubMed

Bertrand, J A M; Delahaie, B; Bourgeois, Y X C; Duval, T; García-Jiménez, R; Cornuault, J; Pujol, B; Thébaud, C; Milá, B

2016-04-01

Adaptation to local environmental conditions and the range dynamics of populations can influence evolutionary divergence along environmental gradients. Thus, it is important to investigate patterns of both phenotypic and genetic variations among populations to reveal the respective roles of these two types of factors in driving population differentiation. Here, we test for evidence of phenotypic and genetic structure across populations of a passerine bird (Zosterops borbonicus) distributed along a steep elevational gradient on the island of Réunion. Using 11 microsatellite loci screened in 401 individuals from 18 localities distributed along the gradient, we found that genetic differentiation occurred at two spatial levels: (i) between two main population groups corresponding to highland and lowland areas, respectively, and (ii) within each of these two groups. In contrast, several morphological traits varied gradually along the gradient. Comparison of neutral genetic differentiation (FST ) and phenotypic differentiation (PST ) showed that PST largely exceeds FST at several morphological traits, which is consistent with a role for local adaptation in driving morphological divergence along the gradient. Overall, our results revealed an area of secondary contact midway up the gradient between two major, cryptic, population groups likely diverged in allopatry. Remarkably, local adaptation has shaped phenotypic differentiation irrespective of population history, resulting in different patterns of variation along the elevational gradient. Our findings underscore the importance of understanding both historical and selective factors when trying to explain variation along environmental gradients. © 2016 European Society For Evolutionary Biology. Journal of Evolutionary Biology © 2016 European Society For Evolutionary Biology.

Distribution of late gadolinium enhancement in various types of cardiomyopathies: Significance in differential diagnosis, clinical features and prognosis.

PubMed

Satoh, Hiroshi; Sano, Makoto; Suwa, Kenichiro; Saitoh, Takeji; Nobuhara, Mamoru; Saotome, Masao; Urushida, Tsuyoshi; Katoh, Hideki; Hayashi, Hideharu

2014-07-26

The recent development of cardiac magnetic resonance (CMR) techniques has allowed detailed analyses of cardiac function and tissue characterization with high spatial resolution. We review characteristic CMR features in ischemic and non-ischemic cardiomyopathies (ICM and NICM), especially in terms of the location and distribution of late gadolinium enhancement (LGE). CMR in ICM shows segmental wall motion abnormalities or wall thinning in a particular coronary arterial territory, and the subendocardial or transmural LGE. LGE in NICM generally does not correspond to any particular coronary artery distribution and is located mostly in the mid-wall to subepicardial layer. The analysis of LGE distribution is valuable to differentiate NICM with diffusely impaired systolic function, including dilated cardiomyopathy, end-stage hypertrophic cardiomyopathy (HCM), cardiac sarcoidosis, and myocarditis, and those with diffuse left ventricular (LV) hypertrophy including HCM, cardiac amyloidosis and Anderson-Fabry disease. A transient low signal intensity LGE in regions of severe LV dysfunction is a particular feature of stress cardiomyopathy. In arrhythmogenic right ventricular cardiomyopathy/dysplasia, an enhancement of right ventricular (RV) wall with functional and morphological changes of RV becomes apparent. Finally, the analyses of LGE distribution have potentials to predict cardiac outcomes and response to treatments.

Fiber diameter distributions in the chinchilla's ampullary nerves

NASA Technical Reports Server (NTRS)

Hoffman, Larry F.; Honrubia, Vicente

2002-01-01

A morphometric study of the chinchilla's ampullary nerves was conducted to produce an unbiased accounting of the diameter distribution of their constituent fibers. Diameter analyses were determined from 1 microm plastic-embedded nerve sections taken at a plane immediately proximal to the sensory epithelium. We found these nerves to be composed of 2094+/-573 fibers, having diameters that ranged from 0.5 to 8 microm. The distributions of diameters were positively skewed, where approximately 75% of the fibers were found to have diameters less than 3.5 microm. An analysis of the spatial distribution of diameters within the nerve section revealed that the lateralmost areas of the nerve contained larger fractions of fibers within the smallest diameter quintiles, and the central area harbored greater proportions of the larger diameter quintiles. However, significant fractions of all quintiles were found in all areas. These data were integrated with available data of Fernandez et al. (1998) to produce diameter estimates of calyx, dimorphic, and bouton morphology subpopulations. In view of a general relationship between diameter, innervation locus, and an afferent's physiologic characteristics, these data provide the basis for developing a perspective for the in situ distribution of afferent response dynamics.

Spatial Variability of Streambed Hydraulic Conductivity of a Lowland River

NASA Astrophysics Data System (ADS)

Schneidewind, Uwe; Thornton, Steven; Van De Vijver, Ellen; Joris, Ingeborg; Seuntjens, Piet

2015-04-01

Streambed hydraulic conductivity K is a key physical parameter, which describes flow processes in the hyporheic zone (HZ), i.e. the dynamic interface between aquifers and streams or rivers. Knowledge of the spatial variability of K is also important for the interpretation of contaminant transport processes in the HZ. Streambed K can vary over several magnitudes at small spatial scales. It depends mostly on streambed sediment characteristics (e.g. effective porosity, grain size, packing), streambed processes (e.g. sedimentation, colmation and erosion) and the development of stream channel geometry and streambed morphology (e.g. dunes, anti-dunes, pool-riffle sequences, etc.). Although heterogeneous in natural streambeds, streambed K is often considered to be a constant parameter due to a lack of information on its spatial distribution. Here we show the spatial variability of streambed K for a small section of the River Tern, a lowland river in the UK. Streambed K was determined for more than 120 vertically and horizontally distributed locations from grain size analyses using four empirical approaches (Hazen, Beyer, Kozeny and the USBR model). Additionally, streambed K was estimated from falling head tests in 36 piezometers installed into the streambed on a 4 m by 16 m grid, by applying the Springer-Gelhar Model. For both methods streambed K followed a log-normal distribution. Variogram analysis was used to deduce the spatial variability of the streambed K values within several streambed profiles parallel and perpendicular to the main flow direction in the stream. Hydraulic conductivity Kg estimated from grain size analyses varied between 1 m/d and 155 m/d with standard deviations of 79% to 99% depending on the empirical approach used. Kh estimated from falling head tests varied between 1 m/d and 22 m/d with a standard deviation of about 50%, depending on the degree of anisotropy assumed. After rescaling the data to obtain a common sample support, Pearson correlation coefficients r were calculated between Kg and Kh. Overall, a relatively weak correlation (r < 0.3) was found between both parameters. This is most probably a result from soil coring that destroys the original sediment structure and any anisotropy within it. Analysis of streambed K improved our understanding of the flow behavior in the HZ on a local scale. This will be of importance for the subsequent assessment of nitrate transport and attenuation in the river section.

Current Status and Future Perspectives of Mass Spectrometry Imaging

PubMed Central

Nimesh, Surendra; Mohottalage, Susantha; Vincent, Renaud; Kumarathasan, Prem

2013-01-01

Mass spectrometry imaging is employed for mapping proteins, lipids and metabolites in biological tissues in a morphological context. Although initially developed as a tool for biomarker discovery by imaging the distribution of protein/peptide in tissue sections, the high sensitivity and molecular specificity of this technique have enabled its application to biomolecules, other than proteins, even in cells, latent finger prints and whole organisms. Relatively simple, with no requirement for labelling, homogenization, extraction or reconstitution, the technique has found a variety of applications in molecular biology, pathology, pharmacology and toxicology. By discriminating the spatial distribution of biomolecules in serial sections of tissues, biomarkers of lesions and the biological responses to stressors or diseases can be better understood in the context of structure and function. In this review, we have discussed the advances in the different aspects of mass spectrometry imaging processes, application towards different disciplines and relevance to the field of toxicology. PMID:23759983

Studies of the Virgo cluster. VI - Morphological and kinematical structure of the Virgo cluster

NASA Technical Reports Server (NTRS)

Binggeli, Bruno; Tammann, G. A.; Sandage, Allan

1987-01-01

The structure of the Virgo cluster is analyzed on the basis of the positions, Hubble types, and radial velocities of 1277 Virgo cluster galaxies. The surface distribution of galaxies is considered according to type, and is discussed using maps, isopleths, strip counts, and radial-density distributions. It is found that the Virgo cluster shows pronounced double structure. The main concentration has a large velocity dispersion and is made up predominantly of early-type galaxies, while the secondary concentration has a much smaller velocity dispersion and contains late types. There is a strong spatial segregation of the Hubble types, the early-type galaxies being more concentrated toward the cluster center. There is significant substructure in the cluster core. The irregularity of the Virgo cluster in both configuration and velocity space shows that the core and the envelope are still forming, and hence that the cluster is young.

Sources of lead and zinc associated with metal smelting activities in the Trail area, British Columbia, Canada.

PubMed

Goodarzi, Fariborz; Sanei, Hamed; Labonté, Marcel; Duncan, William F

2002-06-01

The spatial distribution and deposition of lead and zinc emitted from the Trail smelter, British Columbia, Canada, was studied by strategically locating moss bags in the area surrounding the smelter and monitoring the deposition of elements every three months. A combined diffusion/distribution model was applied to estimate the relative contribution of stack-emitted material and material emitted from the secondary sources (e.g., wind-blown dust from ore/slag storage piles, uncovered transportation/trucking of ore, and historical dust). The results indicate that secondary sources are the major contributor of lead and zinc deposited within a short distance from the smelter. Gradually, the stack emissions become the main source of Pb and Zn at greater distances from the smelter. Typical material originating from each source was characterized by SEM/EDX, which indicated a marked difference in their morphology and chemical composition.

Tight coupling between coral reef morphology and mapped resilience in the Red Sea.

PubMed

Rowlands, Gwilym; Purkis, Sam; Bruckner, Andrew

2016-04-30

Lack of knowledge on the conservation value of different reef types can stymie decision making, and result in less optimal management solutions. Addressing the information gap of coral reef resilience, we produce a map-based Remote Sensed Resilience Index (RSRI) from data describing the spatial distribution of stressors, and properties of reef habitats on the Farasan Banks, Saudi Arabia. We contrast the distribution of this index among fourteen reef types, categorized on a scale of maturity that includes juvenile (poorly aggraded), mature (partially aggraded), and senile (fully aggraded) reefs. Sites with high reef resilience can be found in most detached reef types; however they are most common in mature reefs. We aim to stimulate debate on the coupling that exists between geomorphology and conservation biology, and consider how such information can be used to inform management decisions. Copyright © 2015 Elsevier Ltd. All rights reserved.

Understanding relationships between morphology and ecosystem structure in a shallow tidal basins of Venice lagoon

NASA Astrophysics Data System (ADS)

Giuseppina Persichillo, Maria; Taramelli, Andrea; Valentini, Emiliana; Filipponi, Federico; Meisina, Claudia; Zucca, Francesco

2014-05-01

Coastal wetlands represent complex ecosystems prone to continue fluctuation of their internal equilibrium. They are valuable natural resources characterized by the continue interactions between geomorphological and biological components. Their adaptation to changing conditions is highly dependent on the rate and extent of spatial and temporal processes and their responses are still poorly understood. According to this, the vulnerability assessment to natural and human made hazard have became fundamental to analyse the resilience of these areas, their ability to cope with the impacts from externally driven forces or the efforts needed to minimize the impacts (Gitay et al., 2011). The objective of this research is to develop a comprehensive and replicable method through the application of Multi-Source data analysis, based on the integration of Earth Observation data and field survey, to analyse a shallow tidal basin of salt marshes, located in the northern part of the Venice lagoon. The study site is characterised by relatively elevated areas colonized by halophytic vegetation, and tidal flats, with not vegetated areas, characterized by lower elevations. Sub-pixel processing techniques (Spectral Mixing Analysis - SMA) were used to analyse the spatial distribution of both vegetation and sediments typology. Furthermore the classifications were assayed in terms of spatial (Power law) and temporal (Empirical Orthogonal Functions) patterns, in order to find the main characteristics of the aforementioned spatial trends and their variation over time. The principal aim is to study the spatio-temporal evolution of this coastal wetland area, in order to indentify tipping points, namely thresholds, beyond which the system reaches critical state and the main climatic, hydrodynamic and morphological variables that may influence and increase this behaviour. This research represents a new approach to study the geomorphological processes and to improve the management and conservation planning for coastal areas. Reference: Gitay H., Finlayson C.M. and Davidson N.(2011) - A Framework for assessing the vulnerability of wetlands to climate change, Ramsar Technical Report No. 5, 1-18.

The Hierarchical Distribution of the Young Stellar Clusters in Six Local Star-forming Galaxies

DOE Office of Scientific and Technical Information (OSTI.GOV)

Grasha, K.; Calzetti, D.; Adamo, A.

We present a study of the hierarchical clustering of the young stellar clusters in six local (3–15 Mpc) star-forming galaxies using Hubble Space Telescope broadband WFC3/UVIS UV and optical images from the Treasury Program LEGUS (Legacy ExtraGalactic UV Survey). We identified 3685 likely clusters and associations, each visually classified by their morphology, and we use the angular two-point correlation function to study the clustering of these stellar systems. We find that the spatial distribution of the young clusters and associations are clustered with respect to each other, forming large, unbound hierarchical star-forming complexes that are in general very young. Themore » strength of the clustering decreases with increasing age of the star clusters and stellar associations, becoming more homogeneously distributed after ∼40–60 Myr and on scales larger than a few hundred parsecs. In all galaxies, the associations exhibit a global behavior that is distinct and more strongly correlated from compact clusters. Thus, populations of clusters are more evolved than associations in terms of their spatial distribution, traveling significantly from their birth site within a few tens of Myr, whereas associations show evidence of disruption occurring very quickly after their formation. The clustering of the stellar systems resembles that of a turbulent interstellar medium that drives the star formation process, correlating the components in unbound star-forming complexes in a hierarchical manner, dispersing shortly after formation, suggestive of a single, continuous mode of star formation across all galaxies.« less

Deducing Electron Properties from Hard X-Ray Observations

NASA Technical Reports Server (NTRS)

Kontar, E. P.; Brown, J. C.; Emslie, A. G.; Hajdas, W.; Holman, G. D.; Hurford, G. J.; Kasparova, J.; Mallik, P. C. V.; Massone, A. M.; McConnell, M. L.;

On the representation of cells in bone marrow pathology by a scalar field: propagation through serial sections, co-localization and spatial interaction analysis.

PubMed

Weis, Cleo-Aron; Grießmann, Benedict Walter; Scharff, Christoph; Detzner, Caecilia; Pfister, Eva; Marx, Alexander; Zoellner, Frank Gerrit

2015-09-02

Immunohistochemical analysis of cellular interactions in the bone marrow in situ is demanding, due to its heterogeneous cellular composition, the poor delineation and overlap of functional compartments and highly complex immunophenotypes of several cell populations (e.g. regulatory T-cells) that require immunohistochemical marker sets for unambiguous characterization. To overcome these difficulties, we herein present an approach to describe objects (e.g. cells, bone trabeculae) by a scalar field that can be propagated through registered images of serial histological sections. The transformation of objects within images (e.g. cells) to a scalar field was performed by convolution of the object's centroids with differently formed radial basis function (e.g. for direct or indirect spatial interaction). On the basis of such a scalar field, a summation field described distributed objects within an image. After image registration i) colocalization analysis could be performed on basis scalar field, which is propagated through registered images, and - due to the shape of the field - were barely prone to matching errors and morphological changes by different cutting levels; ii) furthermore, depending on the field shape the colocalization measurements could also quantify spatial interaction (e.g. direct or paracrine cellular contact); ii) the field-overlap, which represents the spatial distance, of different objects (e.g. two cells) could be calculated by the histogram intersection. The description of objects (e.g. cells, cell clusters, bone trabeculae etc.) as a field offers several possibilities: First, co-localization of different markers (e.g. by immunohistochemical staining) in serial sections can be performed in an automatic, objective and quantifiable way. In contrast to multicolour staining (e.g. 10-colour immunofluorescence) the financial and technical requirements are fairly minor. Second, the approach allows searching for different types of spatial interactions (e.g. direct and indirect cellular interaction) between objects by taking field shape into account (e.g. thin vs. broad). Third, by describing spatially distributed groups of objects as summation field, it gives cluster definition that relies rather on the bare object distance than on the modelled spatial cellular interaction.

Size-associated morphological variation in the red tree vole (Arborimus longicaudus)

Treesearch

Mark P. Miller; Eric D. Forsman; James K. Swingle; Stephanie A. Miller; Susan M. Haig

2010-01-01

We examined patterns of size-associated morphological variation within the Red Tree Vole (Arborimus longicaudus) for the purposes of 1) identifying differences between the Red Tree Vole and the Dusky Tree Vole (A. l. silvicola), a putative subspecies of the Red Tree Vole; and 2) examining spatial patterns of morphological...

Fast and Furious: Shock Heated Gas as the Origin of Spatially Resolved Hard X-Ray Emission in the Central 5 kpc of the Galaxy Merger NGC 6240

NASA Astrophysics Data System (ADS)

Wang, Junfeng; Nardini, Emanuele; Fabbiano, Giuseppina; Karovska, Margarita; Elvis, Martin; Pellegrini, Silvia; Max, Claire; Risaliti, Guido; U, Vivian; Zezas, Andreas

2014-01-01

We have obtained a deep, subarcsecond resolution X-ray image of the nuclear region of the luminous galaxy merger NGC 6240 with Chandra, which resolves the X-ray emission from the pair of active nuclei and the diffuse hot gas in great detail. We detect extended hard X-ray emission from kT ~ 6 keV (~70 MK) hot gas over a spatial scale of 5 kpc, indicating the presence of fast shocks with a velocity of ~2200 km s-1. For the first time, we obtain the spatial distribution of this highly ionized gas emitting Fe XXV, which shows a remarkable correspondence to the large-scale morphology of H2(1-0) S(1) line emission and Hα filaments. Propagation of fast shocks originating in the starburst-driven wind into the ambient dense gas can account for this morphological correspondence. With an observed L 0.5-8 keV = 5.3 × 1041 erg s-1, the diffuse hard X-ray emission is ~100 times more luminous than that observed in the classic starburst galaxy M82. Assuming a filling factor of 1% for the 70 MK temperature gas, we estimate its total mass (M hot = 1.8 × 108 M ⊙) and thermal energy (E th = 6.5 × 1057 erg). The total iron mass in the highly ionized plasma is M Fe = 4.6 × 105 M ⊙. Both the energetics and the iron mass in the hot gas are consistent with the expected injection from the supernovae explosion during the starburst that is commensurate with its high star formation rate. No evidence for fluorescent Fe I emission is found in the CO filament connecting the two nuclei.

Star Formation at z = 2.481 in the Lensed Galaxy SDSS J1110+6459. II. What is Missed at the Normal Resolution of the Hubble Space Telescope?

NASA Astrophysics Data System (ADS)

Rigby, J. R.; Johnson, T. L.; Sharon, K.; Whitaker, K.; Gladders, M. D.; Florian, M.; Lotz, J.; Bayliss, M.; Wuyts, E.

2017-07-01

For lensed galaxy SGAS J111020.0+645950.8 at redshift z = 2.481, which is magnified by a factor of 28 ± 8, we analyze the morphology of star formation, as traced by rest-frame ultraviolet emission, in both the highly magnified source plane and simulations of how this galaxy would appear without lensing magnification. Were this galaxy not lensed, but rather drawn from a Hubble Space Telescope deep field, we would conclude that almost all its star formation arises from an exponential disk (Sérsic index of 1.0 ± 0.4) with an effective radius of {r}e=2.7+/- 0.3 {kpc} measured from two-dimensional fitting to F606W using Galfit, and {r}e=1.9+/- 0.1 {kpc} measured by fitting a radial profile to F606W elliptical isophotes. At the normal spatial resolution of the deep fields, there is no sign of clumpy star formation within SGAS J111020.0+645950.8. However, the enhanced spatial resolution enabled by gravitational lensing tells a very different story; much of the star formation arises in two dozen clumps with sizes of r = 30-50 pc spread across the 7 kpc length of the galaxy. The color and spatial distribution of the diffuse component suggests that still-smaller clumps are unresolved. Despite this clumpy, messy morphology, the radial profile is still well-characterized by an exponential profile. In this lensed galaxy, stars are forming in complexes with sizes well below 100 pc such sizes are wholly unexplored by surveys of galaxy evolution at 1< z< 3.

Interhemispheric Asymmetry in the Mesosphere and Lower Thermosphere Observed by SABER/TIMED

NASA Astrophysics Data System (ADS)

Yee, J. H.

2017-12-01

In this paper we analyze nearly 15 years of satellite observations of temperature, airglow, and composition in the Mesosphere and Lower Thermosphere (MLT) to quantify their interhemispheric asymmetries ao one can provide quantitative links between observed asymmetries and the spatial and temporal variations of the gravity wave activity. Two processes are believed to be responsible for observed interhemispheric differences in the MLT. The first is the direct radiation effect from the eccentricity of the Earth orbit amd the other is the difference in gravity wave source distribution and filtering due to asymmetries in mean winds of the lower atmosphere. Both processes have been theoretically investigated to explain the observed asymmetry in some of the atmospheric parameters, but not self-consistently in all observed parameters together. In this paper we will show the asymmetry in the time-varying zonal-mean latitudinal structures of temperature, airglow emission rate, and composition observed by TIMED/SABER. We will quantify their interhemispheric asymmetries for different seasons under different solar activity conditions. In addition, temperature measurements will also be used to obtain temporal and spatial morphology of gravity wave potential energies. We will interpret the asymmetry in the observed fields and examine qualitatively their consistency with the two responsible processes, especially the one due to gravity wave filtering process. Our goal is to introduce and to share the spatial and temporal morphologies of all the observed fields to the modeling community so, together self-consistently, they be can be used to gain physical insights into the relative importance of various drivers responsible for the observed asymmetry, especially the role of gravity wave induced eddy drag and mixing, a critical, but least quantitatively understood process.

Landscape Metrics to Predict Soil Spatial Patterns

NASA Astrophysics Data System (ADS)

Gillin, C. P.; McGuire, K. J.; Bailey, S.; Prisley, S.

2012-12-01

Recent literature has advocated the application of hydropedology, or the integration of hydrology and pedology, to better understand hydrologic flowpaths and soil spatial heterogeneity in a landscape. Hydropedology can be used to describe soil units affected by distinct topography, geology, and hydrology. Such a method has not been applied to digital soil mapping in the context of spatial variations in hydrological and biogeochemical processes. The purpose of this study is to use field observations of soil morphology, geospatial information technology, and a multinomial logistic regression model to predict the distribution of five hydropedological units (HPUs) across a 41-hectare forested headwater catchment in New England. Each HPU reflects varying degrees of lateral flow influence on soil development. Ninety-six soil characterization pits were located throughout the watershed, and HPU type was identified at each pit based on the presence and thickness of genetic soil horizons. Digital terrain analysis was conducted using ArcGIS and SAGA software to compute topographic and landscape metrics. Results indicate that each HPU occurs under specific topographic settings that influence subsurface hydrologic conditions. Among the most important landscape metrics are distance from stream, distance from bedrock outcrop, upslope accumulated area, the topographic wetness index, the downslope index, and curvature. Our project is unique in that it delineates high resolution soil units using a process-based morphological approach rather than a traditional taxonomical method taken by conventional soil surveys. Hydropedological predictor models can be a valuable tool for informing forest and land management decisions, water quality planning, soil carbon accounting, and understanding subsurface hydrologic dynamics. They can also be readily calibrated for regions of differing geology, topography, and climate regimes.

Beneath the Surface: Understanding Patterns of Intra-Domain Orientational Order

NASA Astrophysics Data System (ADS)

Prasad, Ishan; Seo, Youngmi; Hall, Lisa; Grason, Gregory

Block copolymers (BCP) self assemble into a rich spectrum of ordered phases due to asymmetry in copolymer architecture. Despite extensive study of spatially-ordered composition patterns of BCP, knowledge of orientational order of chain segments that underlie these spatial patterns is evidently missing. We show using self consistent field (SCF) theory and coarse-grained molecular dynamics (MD) simulations that, even without explicit orientational interactions between segments, BCP exhibit generic patterns of intra-domain segment orientation, which vary both within a given morphology and from morphology to morphology. We find that segment alignment is usually both normal and parallel to the interface within different local regions of a BCP sub-domain. We describe principles that control relative strength and directionality of alignment in different morphologies and report a surprising yet generic emergence of biaxial segment order in morphologies with anisotropic curved interfaces, such as cylinders and gyroid phases. Finally, we focus our study on cholesteric textures that pervade mesochiral BCP morphologies, specifically alternating double gyroid (aDG) and helical cylinder (H*) phases, and analyze patterns of twisted (nematic and polar) segment order within these domains.

Intraspecific Genetic Admixture and the Morphological Diversification of an Estuarine Fish Population Complex

PubMed Central

Legault, Michel

2015-01-01

The North-east American Rainbow smelt (Osmerus mordax) is composed of two glacial races first identified through the spatial distribution of two distinct mtDNA lineages. Contemporary breeding populations of smelt in the St. Lawrence estuary comprise contrasting mixtures of both lineages, suggesting that the two races came into secondary contact in this estuary. The overall objective of this study was to assess the role of intraspecific genetic admixture in the morphological diversification of the estuarine rainbow smelt population complex. The morphology of mixed-ancestry populations varied as a function of the relative contribution of the two races to estuarine populations, supporting the hypothesis of genetic admixture. Populations comprising both ancestral mtDNA races did not exhibit intermediate morphologies relative to pure populations but rather exhibited many traits that exceeded the parental trait values, consistent with the hypothesis of transgressive segregation. Evidence for genetic admixture at the level of the nuclear gene pool, however, provided only partial support for this hypothesis. Variation at nuclear AFLP markers revealed clear evidence of the two corresponding mtDNA glacial races. The admixture of the two races at the nuclear level is only pronounced in mixed-ancestry populations dominated by one of the mtDNA lineages, the same populations showing the greatest degree of morphological diversification and population structure. In contrast, mixed-ancestry populations dominated by the alternate mtDNA lineage showed little evidence of introgression of the nuclear genome, little morphological diversification and little contemporary population genetic structure. These results only partially support the hypothesis of transgressive segregation and may be the result of the differential effects of natural selection acting on admixed genomes from different sources. PMID:25856193

Seasonal to interannual morphodynamics along a high-energy dissipative littoral cell

USGS Publications Warehouse

Ruggiero, P.; Kaminsky, G.M.; Gelfenbaum, G.; Voigt, B.

2005-01-01

A beach morphology monitoring program was initiated during summer 1997 along the Columbia River littoral cell (CRLC) on the coasts of northwest Oregon and southwest Washington, USA. This field program documents the seasonal through interannual morphological variability of these high-energy dissipative beaches over a variety of spatial scales. Following the installation of a dense network of geodetic control monuments, a nested sampling scheme consisting of cross-shore topographic beach profiles, three-dimensional topographic beach surface maps, nearshore bathymetric surveys, and sediment size distribution analyses was initiated. Beach monitoring is being conducted with state-of-the-art real-time kinematic differential global positioning system survey methods that combine both high accuracy and speed of measurement. Sampling methods resolve variability in beach morphology at alongshore length scales of approximately 10 meters to approximately 100 kilometers and cross-shore length scales of approximately 1 meter to approximately 2 kilometers. During the winter of 1997/1998, coastal change in the US Pacific Northwest was greatly influenced by one of the strongest El Nin??o events on record. Steeper than typical southerly wave angles resulted in alongshore sediment transport gradients and shoreline reorientation on a regional scale. The La Nin??a of 1998/1999, dominated by cross-shore processes associated with the largest recorded wave year in the region, resulted in net beach erosion along much of the littoral cell. The monitoring program successfully documented the morphological response to these interannual forcing anomalies as well as the subsequent beach recovery associated with three consecutive moderate wave years. These morphological observations within the CRLC can be generalized to explain overall system patterns; however, distinct differences in large-scale coastal behavior (e.g., foredune ridge morphology, sandbar morphometrics, and nearshore beach slopes) are not readily explained or understood.

Cryptic Speciation Patterns in Iranian Rock Lizards Uncovered by Integrative Taxonomy

PubMed Central

Ahmadzadeh, Faraham; Flecks, Morris; Carretero, Miguel A.; Mozaffari, Omid; Böhme, Wolfgang; Harris, D. James; Freitas, Susana; Rödder, Dennis

2013-01-01

While traditionally species recognition has been based solely on morphological differences either typological or quantitative, several newly developed methods can be used for a more objective and integrative approach on species delimitation. This may be especially relevant when dealing with cryptic species or species complexes, where high overall resemblance between species is coupled with comparatively high morphological variation within populations. Rock lizards, genus Darevskia, are such an example, as many of its members offer few diagnostic morphological features. Herein, we use a combination of genetic, morphological and ecological criteria to delimit cryptic species within two species complexes, D. chlorogaster and D. defilippii, both distributed in northern Iran. Our analyses are based on molecular information from two nuclear and two mitochondrial genes, morphological data (15 morphometric, 16 meristic and four categorical characters) and eleven newly calculated spatial environmental predictors. The phylogeny inferred for Darevskia confirmed monophyly of each species complex, with each of them comprising several highly divergent clades, especially when compared to other congeners. We identified seven candidate species within each complex, of which three and four species were supported by Bayesian species delimitation within D. chlorogaster and D. defilippii, respectively. Trained with genetically determined clades, Ecological Niche Modeling provided additional support for these cryptic species. Especially those within the D. defilippii-complex exhibit well-differentiated niches. Due to overall morphological resemblance, in a first approach PCA with mixed variables only showed the separation between the two complexes. However, MANCOVA and subsequent Discriminant Analysis performed separately for both complexes allowed for distinction of the species when sample size was large enough, namely within the D. chlorogaster-complex. In conclusion, the results support four new species, which are described herein. PMID:24324611

Comparative Roughness Characteristics of the Subducting Seafloor and Statistical Relationships with Seismogenic Potential, with Special Emphasis on Great Earthquakes

NASA Astrophysics Data System (ADS)

Lallemand, S.; Peyret, M.; van Rijsingen, E.; Arcay, D.

2017-12-01

Do some topographic features or morphological characteristics promote earthquake nucleation, large coseismic slip or creep ? To answer this question, we have developed a new database called "SubRough" which provides few roughness parameters at selected spatial wavelengths. Since the currently subducting topography is generally unknown, we assume that the bathymetry of the oceanic plates, a few hundreds of km seaward of the trench, is a reasonable proxy for determining the roughness of the subduction interface. Given the selected wavelengths in our roughness study (detailed below), we do not expect major changes when entering the subduction zone, even though the presence of a subduction channel or significant sediment offscrapping may alter it. Morphological objects characterized by high spatial frequencies (isolated seamounts or fracture zones) are likely to play a role in large events initiation or termination. Similarly, wide "smooth" areas may likely favor rupture propagation and thus large events, while ridges or plateaus may also play a specific role in seismic behavior. Consequently, we only retain the roughness components Rsw and Rlw that are comprised respectively within 2 wavelength bands: [12-20 km] and [80-100 km]. The choice of these wavelengths is constrained by the resolution of the bathymetry, the size of the studied area and the characteristic wavelengths of the seafloor topography. This new morphological information is then statistically analyzed to better understand how topographic features are modeled by roughness data. From a worldwide statistical point of view, fracture zones show similar amplitudes as mean seafloor at both wavelengths, which indicates that it is not possible to distinguish them from the background signal. Conversely, seamounts show roughness amplitudes about two times larger than the averaged ones at both wavelengths. Ridges and plateaus show Rlw amplitudes similar to seamounts but lower Rsw than seamounts. Finally, the roughness information is confronted to the spatial characteristics of earthquakes (epicenter location, slip distribution) along all subduction zones. We observe that most M>8.3 subduction earthquakes occurred in areas characterized by low Rsw and Rlw.

Roots Revealed - Neutron imaging insight of spatial distribution, morphology, growth and function

NASA Astrophysics Data System (ADS)

Warren, J.; Bilheux, H.; Kang, M.; Voisin, S.; Cheng, C.; Horita, J.; Perfect, E.

2013-05-01

Root production, distribution and turnover are not easily measured, yet their dynamics are an essential part of understanding and modeling ecosystem response to changing environmental conditions. Root age, order, morphology and mycorrhizal associations all regulate root uptake of water and nutrients, which along with along with root distribution determines plant response to, and impact on its local environment. Our objectives were to demonstrate the ability to non-invasively monitor fine root distribution, root growth and root functionality in Zea mays L. (maize) and Panicum virgatum L. (switchgrass) seedlings using neutron imaging. Plants were propagated in aluminum chambers containing sand then placed into a high flux cold neutron beam line. Dynamics of root distribution and growth were assessed by collecting consecutive CCD radiographs through time. Root functionality was assessed by tracking individual root uptake of water (H2O) or deuterium oxide (D2O) through time. Since neutrons strongly scatter H atoms, but not D atoms, biological materials such as plants are prime candidates for neutron imaging. 2D and 3D neutron radiography readily illuminated root structure, root growth, and relative plant and soil water content. Fungal hyphae associated with the roots were also visible and appeared as dark masses since their diameter was likely several orders of magnitude less than ~100 μm resolution of the detector. The 2D pulse-chase irrigation experiments with H2O and D2O successfully allowed observation of uptake and mass flow of water within the root system. Water flux within individual roots responded differentially to foliar illumination based on internal water potential gradients, illustrating the ability to track root functionality based on root size, order and distribution within the soil. (L) neutron image of switchgrass growing in sandy soil with 100 μm diameter roots (R) 3D reconstruction of maize seedling following neutron tomography

Effects of geometrical structure on spatial distribution of thermal energy in two-dimensional triangular lattices

NASA Astrophysics Data System (ADS)

Liu, Yong-Yang; Xu, Yu-Liang; Liu, Zhong-Qiang; Li, Jing; Wang, Chun-Yang; Kong, Xiang-Mu

2018-07-01

Employing the correlation matrix technique, the spatial distribution of thermal energy in two-dimensional triangular lattices in equilibrium, interacting with linear springs, is studied. It is found that the spatial distribution of thermal energy varies with the included angle of the springs. In addition, the average thermal energy of the longer springs is lower. Springs with different included angle and length will lead to an inhomogeneous spatial distribution of thermal energy. This suggests that the spatial distribution of thermal energy is affected by the geometrical structure of the system: the more asymmetric the geometrical structure of the system is, the more inhomogeneous is the spatial distribution of thermal energy.

PROBING THE IONIZATION STATES OF POLYCYCLIC AROMATIC HYDROCARBONS VIA THE 15–20 μm EMISSION BANDS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Shannon, M. J.; Stock, D. J.; Peeters, E., E-mail: mshann3@uwo.ca

2015-10-01

We report new correlations between ratios of band intensities of the 15–20 μm emission bands of polycyclic aromatic hydrocarbons (PAHs) in a sample of 57 sources observed with the Spitzer/Infrared Spectrograph. This sample includes Large Magellanic Cloud point sources from the SAGE-Spec survey, nearby galaxies from the Spitzer Infrared Nearby Galaxies Survey survey, two Galactic interstellar medium cirrus sources, and the spectral maps of the Galactic reflection nebulae NGC 2023 and NGC 7023. We find that the 16.4, 17.4, and 17.8 μm band intensities are inter-correlated in all environments. In NGC 2023 and NGC 7023 these bands also correlate withmore » the 11.0 and 12.7 μm band intensities. The 15.8 μm band correlates only with the 15–18 μm plateau and the 11.2 μm emission. We examine the spatial morphology of these bands and introduce radial cuts. We find that these bands can be spatially organized into three sets: the 12.7, 16.4, and 17.8 μm bands; the 11.2, 15.8 μm bands and the 15–18 μm plateau; and the 11.0 and 17.4 μm bands. We also find that the spatial distribution of the 12.7, 16.4, and 17.8 μm bands can be reconstructed by averaging the spatial distributions of the cationic 11.0 μm and neutral 11.2 μm bands. We conclude that the 17.4 μm band is dominated by cations, the 15.8 μm band by neutral species, and the 12.7, 16.4, and 17.8 μm bands by a combination of the two. These results highlight the importance of PAH ionization for spatially differentiating sub-populations by their 15–20 μm emission variability.« less

Fluorescent silica nanoparticles with chemically reactive surface: Controlling spatial distribution in one-step synthesis.

PubMed

Vera, María L; Cánneva, Antonela; Huck-Iriart, Cristián; Requejo, Felix G; Gonzalez, Mónica C; Dell'Arciprete, María L; Calvo, Alejandra

2017-06-15

The encapsulation of fluorescent dyes inside silica nanoparticles is advantageous to improve their quality as probes. Inside the particle, the fluorophore is protected from the external conditions and its main emission parameters remains unchanged even in the presence of quenchers. On the other hand, the amine-functionalized nanoparticle surface enables a wide range of applications, as amino groups could be easily linked with different biomolecules for targeting purposes. This kind of nanoparticle is regularly synthesized by methods that employ templates, additional nanoparticle formation or multiple pathway process. However, a one-step synthesis will be an efficient approach in this sort of bifunctional hybrid nanoparticles. A co-condensation sol-gel synthesis of hybrid fluorescent silica nanoparticle where developed. The chemical and morphological characterization of the particles where investigated by DRIFTS, XPS, SEM and SAXS. The nanoparticle fluorescent properties were also assessed by excitation-emission matrices and time resolved experiments. We have developed a one-pot synthesis method that enables the simultaneous incorporation of functionalities, the fluorescent molecule and the amino group, by controlling co-condensation process. An exhaustive characterization allows the definition of the spatial distribution of the fluorescent probe, fluorescein isothiocyanate, inside the particle and reactive amino groups on the surface of the nanoparticle with diameter about 100nm. Copyright © 2017 Elsevier Inc. All rights reserved.

Understanding of the Geomorphological Elements in Discrimination of Typical Mediterranean Land Cover Types

NASA Astrophysics Data System (ADS)

Elhag, Mohamed; Boteva, Silvena

2017-12-01

Quantification of geomorphometric features is the keystone concern of the current study. The quantification was based on the statistical approach in term of multivariate analysis of local topographic features. The implemented algorithm utilizes the Digital Elevation Model (DEM) to categorize and extract the geomorphometric features embedded in the topographic dataset. The morphological settings were exercised on the central pixel of 3x3 per-defined convolution kernel to evaluate the surrounding pixels under the right directional pour point model (D8) of the azimuth viewpoints. Realization of unsupervised classification algorithm in term of Iterative Self-Organizing Data Analysis Technique (ISODATA) was carried out on ASTER GDEM within the boundary of the designated study area to distinguish 10 morphometric classes. The morphometric classes expressed spatial distribution variation in the study area. The adopted methodology is successful to appreciate the spatial distribution of the geomorphometric features under investigation. The conducted results verified the superimposition of the delineated geomorphometric elements over a given remote sensing imagery to be further analyzed. Robust relationship between different Land Cover types and the geomorphological elements was established in the context of the study area. The domination and the relative association of different Land Cover types in corresponding to its geomorphological elements were demonstrated.

At limits of life: multidisciplinary insights reveal environmental constraints on biotic diversity in continental Antarctica.

PubMed

Magalhães, Catarina; Stevens, Mark I; Cary, S Craig; Ball, Becky A; Storey, Bryan C; Wall, Diana H; Türk, Roman; Ruprecht, Ulrike

2012-01-01

Multitrophic communities that maintain the functionality of the extreme Antarctic terrestrial ecosystems, while the simplest of any natural community, are still challenging our knowledge about the limits to life on earth. In this study, we describe and interpret the linkage between the diversity of different trophic level communities to the geological morphology and soil geochemistry in the remote Transantarctic Mountains (Darwin Mountains, 80°S). We examined the distribution and diversity of biota (bacteria, cyanobacteria, lichens, algae, invertebrates) with respect to elevation, age of glacial drift sheets, and soil physicochemistry. Results showed an abiotic spatial gradient with respect to the diversity of the organisms across different trophic levels. More complex communities, in terms of trophic level diversity, were related to the weakly developed younger drifts (Hatherton and Britannia) with higher soil C/N ratio and lower total soluble salts content (thus lower conductivity). Our results indicate that an increase of ion concentration from younger to older drift regions drives a succession of complex to more simple communities, in terms of number of trophic levels and diversity within each group of organisms analysed. This study revealed that integrating diversity across multi-trophic levels of biotic communities with abiotic spatial heterogeneity and geological history is fundamental to understand environmental constraints influencing biological distribution in Antarctic soil ecosystems.

Outer satellite atmospheres: Their nature and planetary interactions

NASA Technical Reports Server (NTRS)

Smyth, W. H.; Combi, M. R.

1984-01-01

Significant insights regarding the nature and interactions of Io and the planetary magnetosphere were gained through modeling studies of the spatial morphology and brightness of the Io sodium cloud. East-west intensity asymmetries in Region A are consistent with an east-west electric field and the offset of the magnetic and planetary-spin axes. East-west orbital asymmetries and the absolute brightness of Region B suggest a low-velocity (3 km/sec) satellite source of 1 to 2 x 10(26) sodium atoms/sec. The time-varying spatial structure of the sodium directional features in near Region C provides direct evidence for a magnetospheric-wind-driven escape mechanism with a high-velocity (20 km/sec) source of 1 x 10(26) atoms/sec and a flux distribution enhanced at the equator relative to the poles. A model for the Io potassium cloud is presented and analysis of data suggests a low velocity source rate of 5 x 10(24) atoms/sec. To understand the role of Titan and non-Titan sources for H atoms in the Saturn system, the lifetime of hydrogen in the planetary magnetosphere was incorporated into the earlier Titan torus model of Smyth (1981) and its expected impact discussed. A particle trajectory model for cometary hydrogen is presented and applied to the Lyman-alpha distribution of Comet Kohoutek (1973XII).

Workplace exposure to nanoparticles from gas metal arc welding process

NASA Astrophysics Data System (ADS)

Zhang, Meibian; Jian, Le; Bin, Pingfan; Xing, Mingluan; Lou, Jianlin; Cong, Liming; Zou, Hua

2013-11-01

Workplace exposure to nanoparticles from gas metal arc welding (GMAW) process in an automobile manufacturing factory was investigated using a combination of multiple metrics and a comparison with background particles. The number concentration (NC), lung-deposited surface area concentration (SAC), estimated SAC and mass concentration (MC) of nanoparticles produced from the GMAW process were significantly higher than those of background particles before welding ( P < 0.01). A bimodal size distribution by mass for welding particles with two peak values (i.e., 10,000-18,000 and 560-320 nm) and a unimodal size distribution by number with 190.7-nm mode size or 154.9-nm geometric size were observed. Nanoparticles by number comprised 60.7 % of particles, whereas nanoparticles by mass only accounted for 18.2 % of the total particles. The morphology of welding particles was dominated by the formation of chain-like agglomerates of primary particles. The metal composition of these welding particles consisted primarily of Fe, Mn, and Zn. The size distribution, morphology, and elemental compositions of welding particles were significantly different from background particles. Working activities, sampling distances from the source, air velocity, engineering control measures, and background particles in working places had significant influences on concentrations of airborne nanoparticle. In addition, SAC showed a high correlation with NC and a relatively low correlation with MC. These findings indicate that the GMAW process is able to generate significant levels of nanoparticles. It is recommended that a combination of multiple metrics is measured as part of a well-designed sampling strategy for airborne nanoparticles. Key exposure factors, such as particle agglomeration/aggregation, background particles, working activities, temporal and spatial distributions of the particles, air velocity, engineering control measures, should be investigated when measuring workplace exposure to nanoparticles.

Mapping the properties of blue compact dwarf galaxies: integral field spectroscopy with PMAS

NASA Astrophysics Data System (ADS)

Cairós, L. M.; Caon, N.; Zurita, C.; Kehrig, C.; Roth, M.; Weilbacher, P.

2010-09-01

Context. Blue compact dwarf (BCD) galaxies are low-luminosity, low-metal content dwarf systems undergoing violent bursts of star formation. They present a unique opportunity to probe galaxy formation and evolution and to investigate the process of star formation in a relatively simple scenario. Spectrophotometric studies of BCDs are essential to disentangle and characterize their stellar populations. Aims: We perform integral field spectroscopy of a sample of BCDs with the aim of analyzing their morphology, the spatial distribution of some of their physical properties (excitation, extinction, and electron density) and their relationship with the distribution and evolutionary state of the stellar populations. Methods: Integral field spectroscopy observations of the sample galaxies were carried out with the Potsdam Multi-Aperture Spectrophotometer (PMAS) at the 3.5 m telescope at Calar Alto Observatory. An area 16 arcsec × 16 arcsec in size was mapped with a spatial sampling of 1 arcsec × 1 arcsec. We obtained data in the 3590-6996 Å spectral range, with a linear dispersion of 3.2 Å per pixel. From these data we built two-dimensional maps of the flux of the most prominent emission lines, of two continuum bands, of the most relevant line ratios, and of the gas velocity field. Integrated spectra of the most prominent star-forming regions and of whole objects within the FOV were used to derive their physical parameters and the gas metal abundances. Results: Six galaxies display the same morphology both in emission line and in continuum maps; only in two objects, Mrk 32 and Tololo 1434+032, the distributions of the ionized gas and of the stars differ considerably. In general the different excitation maps for a same object display the same pattern and trace the star-forming regions, as expected for objects ionized by hot stars; only the outer regions of Mrk 32, I Zw 123 and I Zw 159 display higher [S II]/Hα values, suggestive of shocks. Six galaxies display an inhomogeneous dust distribution. Regarding the kinematics, Mrk 750, Mrk 206 and I Zw 159 display a clear rotation pattern, while in Mrk 32, Mrk 475 and I Zw 123 the velocity fields are flat. Tables 3-6 and Figs. 3-9 are only available in electronic form at http://www.aanda.org

Complementing data-driven and physically-based approaches for predictive morphologic modeling: Results and implication from the Red River Basin, Vietnam

NASA Astrophysics Data System (ADS)

Schmitt, R. J.; Bernardi, D.; Bizzi, S.; Castelletti, A.; Soncini-Sessa, R.

2013-12-01

During the last 30 years, the delta of the Red River (Song Hong) in northern Vietnam experienced grave morphologic degradation processes which severely impact economic activities and endanger region-wide livelihoods. Rapidly progressing river bed incision, for example, threatens the irrigation of the delta's paddy rice crops which constitute 20% of Vietnam's annual rice production. Morphologic alteration is related to a drastically changed sediment balance due to major upstream impoundments, sediment mining and land use changes, further aggravated by changing hydro-meteorological conditions. Despite the severe impacts, river morphology was so far not included into the current efforts to optimize basin wide water resource planning for a lack of suitable, not overly resource demanding modeling strategies. This paper assesses the suitability of data-driven models to provide insights into complex hydromorphologic processes and to complement and enrich physically-based modeling strategies. Hence, to identify key drivers of morphological change while evaluating impacts of future socio-economic, management and climate scenarios on river morphology and the resulting effects on key social needs (e.g. water supply, energy production and flood mitigation). Most relevant drivers and time-scales for the considered processes (e.g. incision) - from days to decades - were identified from hydrologic and sedimentologic time-series using a feature ranking algorithm based on random trees. The feature ranking pointed out bimodal response characteristics, with important contributions of long-to-medium (5 - 15 yrs.) and rather short (10d - 6 months) timescales. An artificial neural network (ANN), built from identified variables, subsequently quantified in detail how these temporal components control long term trends, inter-seasonal fluctuations and day to day variations in morphologic processes. Whereas the general trajectory of incision relates, for example, to the overall regional sediment balance over an extended time-horizon (>15 yrs.), upstream impoundments induce a much more rapid adaptation (1-5 yrs.). The applicability of the ANN as predictive model was evaluated by comparing its results with a traditional, 1D bed evolution model. The next decade's morphologic evolution under an ensemble of scenarios, considering uncertainties in climatic change, socio-economic development and upstream reservoir release policies was derived from both models. The ANN greatly outperforms the 1D model in computational requirements and presents a powerful tool for effective assessment of scenario ensembles and quantification of uncertainties in river hydro-morphology. In contrast, the processes-based model provides detailed, spatio-temporally distributed outputs and validation of the ANN's results for selected scenarios. We conclude that the application of both approaches constitutes a mutually enriching strategy for modern, quantitative catchment management. We argue that physically based modeling can have specific spatial and temporal constrains (e.g. in terms of identifying key drivers and associated temporal and spatial domains) and that linking physically-based with data-driven approaches largely increases the potential for including hydro-morphology into basin-scale water resource management.

Land use, spatial scale, and stream systems: Lessons from an agricultural region

USGS Publications Warehouse

Vondracek, B.; Blann, K.L.; Cox, C.B.; Nerbonne, J.F.; Mumford, K.G.; Nerbonne, B.A.; Sovell, L.A.; Zimmerman, J.K.H.

2005-01-01

We synthesized nine studies that examined the influence of land use at different spatial scales in structuring biotic assemblages and stream channel characteristics in southeastern Minnesota streams. Recent studies have disagreed about the relative importance of catchment versus local characteristics in explaining variation in fish assemblages. Our synthesis indicates that both riparian- and catchment-scale land use explained significant variation in water quality, channel morphology, and fish distribution and density. Fish and macroinvertebrate assemblages can be positively affected by increasing the extent of perennial riparian and upland vegetation. Our synthesis is robust; more than 425 stream reaches were examined in an area that includes a portion of three ecoregions. Fishes ranged from coldwater to warmwater adapted. We suggest that efforts to rehabilitate stream system form and function over the long term should focus on increasing perennial vegetation in both riparian areas and uplands and on managing vegetation in large, contiguous blocks. ?? 2005 Springer Science+Business Media, Inc.

Effects of boundaries and geometry on the spatial distribution of action potential duration in cardiac tissue

PubMed Central

Cherry, Elizabeth M.; Fenton, Flavio H.

2011-01-01

Increased dispersion of action potential duration across cardiac tissue has long been considered an important substrate for the development of most electrical arrhythmias. Although this dispersion has been studied previously by characterizing the static intrinsic gradients in cellular electrophysiology and dynamical gradients generated by fast pacing, few studies have concentrated on dispersions generated solely by structural effects. Here we show how boundaries and geometry can produce spatially dependent changes in action potential duration (APD) in homogeneous and isotropic tissue, where all the cells have the same APD in the absence of diffusion. Electrotonic currents due to coupling within the tissue and at the tissue boundaries can generate dispersion, and the profile of this dispersion can change dramatically depending on tissue size and shape, action potential morphology, tissue dimensionality, and stimulus frequency and location. The dispersion generated by pure geometrical effects can be on the order of tens of milliseconds, enough under certain conditions to produce conduction blocks and initiate reentrant waves. PMID:21762703

Infrared observations of Jovian aurora from Juno's first orbits: Main oval and satellite footprints

NASA Astrophysics Data System (ADS)

Mura, A.; Adriani, A.; Altieri, F.; Connerney, J. E. P.; Bolton, S. J.; Moriconi, M. L.; Gérard, J.-C.; Kurth, W. S.; Dinelli, B. M.; Fabiano, F.; Tosi, F.; Atreya, S. K.; Bagenal, F.; Gladstone, G. R.; Hansen, C.; Levin, S. M.; Mauk, B. H.; McComas, D. J.; Sindoni, G.; Filacchione, G.; Migliorini, A.; Grassi, D.; Piccioni, G.; Noschese, R.; Cicchetti, A.; Turrini, D.; Stefani, S.; Amoroso, M.; Olivieri, A.

2017-06-01

The Jovian Infrared Auroral Mapper (JIRAM) is an imager/spectrometer on board NASA/Juno mission for the study of the Jovian aurorae. The first results of JIRAM's imager channel observations of the H3+ infrared emission, collected around the first Juno perijove, provide excellent spatial and temporal distribution of the Jovian aurorae, and show the morphology of the main ovals, the polar regions, and the footprints of Io, Europa and Ganymede. The extended Io "tail" persists for 3 h after the passage of the satellite flux tube. Multi-arc structures of varied spatial extent appear in both main auroral ovals. Inside the main ovals, intense, localized emissions are observed. In the southern aurora, an evident circular region of strong depletion of H3+ emissions is partially surrounded by an intense emission arc. The southern aurora is brighter than the north one in these observations. Similar, probably conjugate emission patterns are distinguishable in both polar regions.

Continental Drift and Speciation of the Cryptococcus neoformans and Cryptococcus gattii Species Complexes

PubMed Central

Freij, Joudeh B.; Hann-Soden, Christopher; Taylor, John

2017-01-01

ABSTRACT Genomic analysis has placed the origins of two human-pathogenic fungi, the Cryptococcus gattii species complex and the Cryptococcus neoformans species complex, in South America and Africa, respectively. Molecular clock calculations suggest that the two species separated ~80 to 100 million years ago. This time closely approximates the breakup of the supercontinent Pangea, which gave rise to South America and Africa. On the basis of the geographic distribution of these two species complexes and the coincidence of the evolutionary divergence and Pangea breakup times, we propose that a spatial separation caused by continental drift resulted in the emergence of the C. gattii and C. neoformans species complexes from a Pangean ancestor. We note that, despite the spatial and temporal separation that occurred approximately 100 million years ago, these two species complexes are morphologically similar, share virulence factors, and cause very similar diseases. Continuation of these phenotypic characteristics despite ancient separation suggests the maintenance of similar selection pressures throughout geologic ages. PMID:28435888

Continental Drift and Speciation of the Cryptococcus neoformans and Cryptococcus gattii Species Complexes.

PubMed

Casadevall, Arturo; Freij, Joudeh B; Hann-Soden, Christopher; Taylor, John

2017-01-01

Genomic analysis has placed the origins of two human-pathogenic fungi, the Cryptococcus gattii species complex and the Cryptococcus neoformans species complex, in South America and Africa, respectively. Molecular clock calculations suggest that the two species separated ~80 to 100 million years ago. This time closely approximates the breakup of the supercontinent Pangea, which gave rise to South America and Africa. On the basis of the geographic distribution of these two species complexes and the coincidence of the evolutionary divergence and Pangea breakup times, we propose that a spatial separation caused by continental drift resulted in the emergence of the C. gattii and C. neoformans species complexes from a Pangean ancestor. We note that, despite the spatial and temporal separation that occurred approximately 100 million years ago, these two species complexes are morphologically similar, share virulence factors, and cause very similar diseases. Continuation of these phenotypic characteristics despite ancient separation suggests the maintenance of similar selection pressures throughout geologic ages.

Large-Scale Structure of the Molecular Gas in Taurus Revealed by High Spatial Dynamic Range Spectral Line Mapping

NASA Technical Reports Server (NTRS)

Goldsmith, Paul F.

2008-01-01

Viewgraph topics include: optical image of Taurus; dust extinction in IR has provided a new tool for probing cloud morphology; observations of the gas can contribute critical information on gas temperature, gas column density and distribution, mass, and kinematics; the Taurus molecular cloud complex; average spectra in each mask region; mas 2 data; dealing with mask 1 data; behavior of mask 1 pixels; distribution of CO column densities; conversion to H2 column density; variable CO/H2 ratio with values much less than 10(exp -4) at low N indicated by UV results; histogram of N(H2) distribution; H2 column density distribution in Taurus; cumulative distribution of mass and area; lower CO fractional abundance in mask 0 and 1 regions greatly increases mass determined in the analysis; masses determined with variable X(CO) and including diffuse regions agrees well with the found from L(CO); distribution of young stars as a function of molecular column density; star formation efficiency; star formation rate and gas depletion; and enlarged images of some of the regions with numerous young stars. Additional slides examine the origin of the Taurus molecular cloud, evolution from HI gas, kinematics as a clue to its origin, and its relationship to star formation.

Fossils of reionization in the local group

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gnedin, Nickolay Y.; /Fermilab /KICP, Chicago /Chicago U., EFI; Kravtsov, Andrey V.

We use a combination of high-resolution gas dynamics simulations of high-redshift dwarf galaxies and dissipationless simulations of a Milky Way sized halo to estimate the expected abundance and spatial distribution of the dwarf satellite galaxies that formed most of their stars around z {approx} 8 and evolved only little since then. Such galaxies can be considered as fossils of the reionization era, and studying their properties could provide a direct window into the early, pre-reionization stages of galaxy formation. We show that 5-15% of the objects existing at z {approx} 8 do indeed survive until the present in the MWmore » like environment without significant evolution. This implies that it is plausible that the fossil dwarf galaxies do exist in the Local Group. Because such galaxies form their stellar systems early during the period of active merging and accretion, they should have spheroidal morphology regardless of their current distance from the host galaxy. We show that both the expected luminosity function and spatial distribution of dark matter halos which are likely to host fossil galaxies agree reasonably well with the observed distributions of the luminous (L{sub V} > 10{sup 6} Lsun) Local Group fossil candidates near the host galaxy (d<200 kpc). However, the predicted abundance is substantially larger (by a factor of 2-3) for fainter galaxies (L{sub V} < 10{sup 6} Lsun) at larger distances (d>300 kpc). We discuss several possible explanations for this discrepancy.« less

Quantifying urban river-aquifer fluid exchange processes: a multi-scale problem.

PubMed

Ellis, Paul A; Mackay, Rae; Rivett, Michael O

2007-04-01

Groundwater-river exchanges in an urban setting have been investigated through long term field monitoring and detailed modelling of a 7 km reach of the Tame river as it traverses the unconfined Triassic Sandstone aquifer that lies beneath the City of Birmingham, UK. Field investigations and numerical modelling have been completed at a range of spatial and temporal scales from the metre to the kilometre scale and from event (hourly) to multi-annual time scales. The objective has been to quantify the spatial and temporal flow distributions governing mixing processes at the aquifer-river interface that can affect the chemical activity in the hyporheic zone of this urbanised river. The hyporheic zone is defined to be the zone of physical mixing of river and aquifer water. The results highlight the multi-scale controls that govern the fluid exchange distributions that influence the thickness of the mixing zone between urban rivers and groundwater and the patterns of groundwater flow through the bed of the river. The morphologies of the urban river bed and the adjacent river bank sediments are found to be particularly influential in developing the mixing zone at the interface between river and groundwater. Pressure transients in the river are also found to exert an influence on velocity distribution in the bed material. Areas of significant mixing do not appear to be related to the areas of greatest groundwater discharge and therefore this relationship requires further investigation to quantify the actual remedial capacity of the physical hyporheic zone.

Internal tectonic structure of the Central American Wadati-Benioff zone based on analysis of aftershock sequences

NASA Astrophysics Data System (ADS)

Å PičáK, Aleš; Hanuš, VáClav; VaněK, JiřÃ.­; BěHounková, Marie

2007-09-01

Relocated Engdahl et al. (1998) global seismological data for 10 aftershock sequences were used to analyze the internal tectonic structure of the Central American subduction zone; the main shocks of several of these were the most destructive and often referenced earthquakes in the region (e.g., the 1970 Chiapas, 1983 Osa, 1992 Nicaragua, 1999 Quepos, 2001 El Salvador earthquakes). The spatial analysis of aftershock foci distribution was performed in a rotated Cartesian coordinate system (x, y, z) related to the Wadati-Benioff zone, and not in a standard coordinate system (ϕ, λ, h are latitude, longitude, focal depth, respectively). Available fault plane solutions were also transformed into the plane approximating the Wadati-Benioff zone. The spatial distribution of earthquakes in each aftershock sequence was modeled as either a plane fit using a least squares approximation or a volume fit with a minimum thickness rectangular box. The analysis points to a quasi-planar distribution of earthquake foci in all aftershock sequences, manifesting the appurtenance of aftershocks to fracture zones. Geometrical parameters of fracture zones (strike, dip, and dimensions) hosting individual sequences were calculated and compared with the seafloor morphology of the Cocos Plate. The smooth character of the seafloor correlates with the aftershock fracture zones oriented parallel to the trench and commonly subparallel to the subducting slab, whereas subduction of the Cocos Ridge and seamounts around the Quepos Plateau coincides with steeply dipping fracture zones. Transformed focal mechanisms are almost exclusively (>90%) of normal character.

Internal tectonic structure of the Central American Wadati-Benioff zone based on analysis of aftershock sequences

NASA Astrophysics Data System (ADS)

Špičák, Aleš; Hanuš, Václav; Vaněk, Jiří; Běhounková, Marie

2007-09-01

Relocated Engdahl et al. (1998) global seismological data for 10 aftershock sequences were used to analyze the internal tectonic structure of the Central American subduction zone; the main shocks of several of these were the most destructive and often referenced earthquakes in the region (e.g., the 1970 Chiapas, 1983 Osa, 1992 Nicaragua, 1999 Quepos, 2001 El Salvador earthquakes). The spatial analysis of aftershock foci distribution was performed in a rotated Cartesian coordinate system (x, y, z) related to the Wadati-Benioff zone, and not in a standard coordinate system ($\\varphi$, λ, h are latitude, longitude, focal depth, respectively). Available fault plane solutions were also transformed into the plane approximating the Wadati-Benioff zone. The spatial distribution of earthquakes in each aftershock sequence was modeled as either a plane fit using a least squares approximation or a volume fit with a minimum thickness rectangular box. The analysis points to a quasi-planar distribution of earthquake foci in all aftershock sequences, manifesting the appurtenance of aftershocks to fracture zones. Geometrical parameters of fracture zones (strike, dip, and dimensions) hosting individual sequences were calculated and compared with the seafloor morphology of the Cocos Plate. The smooth character of the seafloor correlates with the aftershock fracture zones oriented parallel to the trench and commonly subparallel to the subducting slab, whereas subduction of the Cocos Ridge and seamounts around the Quepos Plateau coincides with steeply dipping fracture zones. Transformed focal mechanisms are almost exclusively (>90%) of normal character.

Spatial distribution of endogenous retinoids in the murine embryonic mandible.

PubMed

Kronmiller, J E; Beeman, C S

1994-12-01

Retinoids play an important part in pattern formation during embryonic development. Exogenous retinoids alter the pattern of skeletal, neural and odontogenic tissues. Endogenous retinoids have been demonstrated previously in the murine embryonic mandible, reaching a concentration peak during the initiation of odontogenesis. It was now found that endogenous retinoids are present in a concentration gradient in the embryonic mouse mandible at the time of the initiation of the dental lamina. All-trans-retinoic acid was more concentrated in the incisor region and retinol in the molar region. These results, and the fact that exogenous retinoids produce supernumerary incisors and missing molars, suggest that all-trans-retinoic acid may instruct incisor morphology.

Multi-scale learning based segmentation of glands in digital colonrectal pathology images.

PubMed

Gao, Yi; Liu, William; Arjun, Shipra; Zhu, Liangjia; Ratner, Vadim; Kurc, Tahsin; Saltz, Joel; Tannenbaum, Allen

2016-02-01

Digital histopathological images provide detailed spatial information of the tissue at micrometer resolution. Among the available contents in the pathology images, meso-scale information, such as the gland morphology, texture, and distribution, are useful diagnostic features. In this work, focusing on the colon-rectal cancer tissue samples, we propose a multi-scale learning based segmentation scheme for the glands in the colon-rectal digital pathology slides. The algorithm learns the gland and non-gland textures from a set of training images in various scales through a sparse dictionary representation. After the learning step, the dictionaries are used collectively to perform the classification and segmentation for the new image.

Multi-scale learning based segmentation of glands in digital colonrectal pathology images

NASA Astrophysics Data System (ADS)

Gao, Yi; Liu, William; Arjun, Shipra; Zhu, Liangjia; Ratner, Vadim; Kurc, Tahsin; Saltz, Joel; Tannenbaum, Allen

2016-03-01

Digital histopathological images provide detailed spatial information of the tissue at micrometer resolution. Among the available contents in the pathology images, meso-scale information, such as the gland morphology, texture, and distribution, are useful diagnostic features. In this work, focusing on the colon-rectal cancer tissue samples, we propose a multi-scale learning based segmentation scheme for the glands in the colon-rectal digital pathology slides. The algorithm learns the gland and non-gland textures from a set of training images in various scales through a sparse dictionary representation. After the learning step, the dictionaries are used collectively to perform the classification and segmentation for the new image.

The morphology of human hyoid bone in relation to sex, age and body proportions.

PubMed

Urbanová, P; Hejna, P; Zátopková, L; Šafr, M

2013-06-01

Morphological aspects of the human hyoid bone are, like many other skeletal elements in human body, greatly affected by individual's sex, age and body proportions. Still, the known sex-dependent bimodality of a number of body size characteristics overshadows the true within-group patterns. Given the ambiguity of the causal effects of age, sex and body size upon hyoid morphology the present study puts the relationship between shape of human hyoid bone and body proportions (height and weight) under scrutiny of a morphological study. Using 211 hyoid bones and landmark-based methods of geometric morphometrics, it was shown that the size of hyoid bones correlated positively with measured body dimensions but showed no correlation if the individual's sex was controlled for. For shape variables, our results revealed that hyoid morphology is clearly related to body size as expressed in terms of the height and weight. Yet, the hyoid shape was shown to result primarily from the sex-related bimodal distribution of studied body size descriptors which, in the case of the height-dependent model, exhibited opposite trends for males and females. Apart from the global hyoid shape given by spatial arrangements of the greater horns, body size dependency was translated into size and position of the hyoid body. None of the body size characters had any impact on hyoid asymmetry. Ultimately, sexually dimorphic variation was revealed for age-dependent changes in both size and shape of hyoid bones as male hyoids tend to be more susceptible to modifications with age than female bones. Copyright © 2013 Elsevier GmbH. All rights reserved.

Voxel-Wise Comparisons of the Morphology of Diffusion Tensors Across Groups of Experimental Subjects

PubMed Central

Bansal, Ravi; Staib, Lawrence H.; Plessen, Kerstin J.; Xu, Dongrong; Royal, Jason; Peterson, Bradley S.

2007-01-01

Water molecules in the brain diffuse preferentially along the fiber tracts within white matter, which form the anatomical connections across spatially distant brain regions. A diffusion tensor (DT) is a probabilistic ellipsoid composed of 3 orthogonal vectors, each having a direction and an associated scalar magnitude, that represent the probability of water molecules diffusing in each of those directions. The 3D morphologies of DTs can be compared across groups of subjects to reveal disruptions in structural organization and neuroanatomical connectivity of the brains of persons with various neuropsychiatric illnesses. Comparisons of tensor morphology across groups have typically been performed on scalar measures of diffusivity, such as Fractional Anisotropy (FA), rather than directly on the complex 3D morphologies of DTs. Scalar measures, however, are related in nonlinear ways to the eigenvalues and eigenvectors that create the 3D morphologies of DTs. We present a mathematical framework that permits the direct comparison across groups of mean eigenvalues and eigenvectors of individual DTs. We show that group-mean eigenvalues and eigenvectors are multivariate Gaussian distributed, and we use the Delta method to compute their approximate covariance matrices. Our results show that the theoretically computed Mean Tensor (MT) eigenvectors and eigenvalues match well with their respective true values. Furthermore, a comparison of synthetically generated groups of DTs highlights the limitations of using FA to detect group differences. Finally, analyses of in vivo DT data using our method reveal significant between-group differences in diffusivity along fiber tracts within white matter, whereas analyses based on FA values failed to detect some of these differences. PMID:18006284

Morphological Innovation in the Acquisition of American Sign Language.

ERIC Educational Resources Information Center

van Hoek, Karen; And Others

A study examined aspects of the acquisition of spatialized morphology and syntax in American Sign Language (ASL) learned natively by deaf children of deaf parents. Children aged 2 to 8 were shown story books to elicit narratives, and the resulting use of verbs contained morphological forms not appearing in adult grammar. Analysis of the creative…

Electronic and Morphological Inhomogeneities in Pristine and Deteriorated Perovskite Photovoltaic Films

DOE PAGES

Berweger, Samuel; MacDonald, Gordon A.; Yang, Mengjin; ...

2017-02-02

We perform scanning microwave microscopy (SMM) to study the spatially varying electronic properties and related morphology of pristine and degraded methylammonium lead-halide (MAPI) perovskite films fabricated under different ambient humidity. Here, we find that higher processing humidity leads to the emergence of increased conductivity at the grain boundaries but also correlates with the appearance of resistive grains that contain PbI 2. Deteriorated films show larger and increasingly insulating grain boundaries as well as spatially localized regions of reduced conductivity within grains. These results suggest that while humidity during film fabrication primarily benefits device properties due to the passivation of trapsmore » at the grain boundaries and self-doping, it also results in the emergence of PbI 2-containing grains. We further establish that MAPI film deterioration under ambient conditions proceeds via the spatially localized breakdown of film conductivity, both at grain boundaries and within grains, due to local variations in susceptibility to deterioration. These results confirm that PbI 2 has both beneficial and adverse effects on device performance and provide new means for device optimization by revealing spatial variations in sample conductivity as well as morphological differences in resistance to sample deterioration.« less

Distribution and biophysical processes of beaded streams in Arctic permafrost landscapes

NASA Astrophysics Data System (ADS)

Arp, C. D.; Whitman, M. S.; Jones, B. M.; Grosse, G.; Gaglioti, B. V.; Heim, K. C.

2015-01-01

Beaded streams are widespread in permafrost regions and are considered a common thermokarst landform. However, little is known about their distribution, how and under what conditions they form, and how their intriguing morphology translates to ecosystem functions and habitat. Here we report on a circum-Arctic survey of beaded streams and a watershed-scale analysis in northern Alaska using remote sensing and field studies. We mapped over 400 channel networks with beaded morphology throughout the continuous permafrost zone of northern Alaska, Canada, and Russia and found the highest abundance associated with medium to high ground-ice content permafrost in moderately sloping terrain. In one Arctic coastal plain watershed, beaded streams accounted for half of the drainage density, occurring primarily as low-order channels initiating from lakes and drained lake basins. Beaded streams predictably transition to alluvial channels with increasing drainage area and decreasing channel slope, although this transition is modified by local controls on water and sediment delivery. The comparisons of one beaded channel using repeat photography between 1948 and 2013 indicate a relatively stable landform, and 14C dating of basal sediments suggest channel formation may be as early as the Pleistocene-Holocene transition. Contemporary processes, such as deep snow accumulation in riparian zones, effectively insulate channel ice and allows for perennial liquid water below most beaded stream pools. Because of this, mean annual temperatures in pool beds are greater than 2 °C, leading to the development of perennial thaw bulbs or taliks underlying these thermokarst features that range from 0.7 to 1.6 m. In the summer, some pools thermally stratify, which reduces permafrost thaw and maintains cold-water habitats. Snowmelt-generated peak flows decrease rapidly by two or more orders of magnitude to summer low flows with slow reach-scale velocity distributions ranging from 0.01 to 0.1 m s-1, yet channel runs still move water rapidly between pools. The repeating spatial pattern associated with beaded stream morphology and hydrological dynamics may provide abundant and optimal foraging habitat for fish. Beaded streams may create important ecosystem functions and habitat in many permafrost landscapes and their distribution and dynamics are only beginning to be recognized in Arctic research.

Distribution and biophysical processes of beaded streams in Arctic permafrost landscapes

USGS Publications Warehouse

Arp, Christopher D.; Whitman, Matthew S.; Jones, Benjamin M.; Grosse, Guido; Gaglioti, Benjamin V.; Heim, Kurt C.

2015-01-01

Beaded streams are widespread in permafrost regions and are considered a common thermokarst landform. However, little is known about their distribution, how and under what conditions they form, and how their intriguing morphology translates to ecosystem functions and habitat. Here we report on a Circum-Arctic survey of beaded streams and a watershed-scale analysis in northern Alaska using remote sensing and field studies. We mapped over 400 channel networks with beaded morphology throughout the continuous permafrost zone of northern Alaska, Canada, and Russia and found the highest abundance associated with medium- to high- ground ice content permafrost in moderately sloping terrain. In the Fish Creek watershed, beaded streams accounted for half of the drainage density, occurring primarily as low-order channels initiating from lakes and drained lake basins. Beaded streams predictably transition to alluvial channels with increasing drainage area and decreasing channel slope, although this transition is modified by local controls on water and sediment delivery. Comparison of one beaded channel using repeat photography between 1948 and 2013 indicate a relatively stable landform and 14C dating of basal sediments suggest channel formation may be as early as the Pleistocene-Holocene transition. Contemporary processes, such as deep snow accumulation in riparian zones effectively insulates channel ice and allows for perennial liquid water below most beaded stream pools. Because of this, mean annual temperatures in pool beds are greater than 2°C, leading to the development of perennial thaw bulbs or taliks underlying these thermokarst features. In the summer, some pools thermally stratify, which reduces permafrost thaw and maintains coldwater habitats. Snowmelt generated peak-flows decrease rapidly by two or more orders of magnitude to summer low flows with slow reach-scale velocity distributions ranging from 0.1 to 0.01 m/s, yet channel runs still move water rapidly between pools. The repeating spatial pattern associated with beaded stream morphology and hydrological dynamics may provide abundant and optimal foraging habitat for fish. Thus, beaded streams may create important ecosystem functions and habitat in many permafrost landscapes and their distribution and dynamics are only beginning to be recognized in Arctic research.

Separating Bulk and Surface Contributions to Electronic Excited-State Processes in Hybrid Mixed Perovskite Thin Films via Multimodal All-Optical Imaging.

PubMed

Simpson, Mary Jane; Doughty, Benjamin; Das, Sanjib; Xiao, Kai; Ma, Ying-Zhong

2017-07-20

A comprehensive understanding of electronic excited-state phenomena underlying the impressive performance of solution-processed hybrid halide perovskite solar cells requires access to both spatially resolved electronic processes and corresponding sample morphological characteristics. Here, we demonstrate an all-optical multimodal imaging approach that enables us to obtain both electronic excited-state and morphological information on a single optical microscope platform with simultaneous high temporal and spatial resolution. Specifically, images were acquired for the same region of interest in thin films of chloride containing mixed lead halide perovskites (CH 3 NH 3 PbI 3-x Cl x ) using femtosecond transient absorption, time-integrated photoluminescence, confocal reflectance, and transmission microscopies. Comprehensive image analysis revealed the presence of surface- and bulk-dominated contributions to the various images, which describe either spatially dependent electronic excited-state properties or morphological variations across the probed region of the thin films. These results show that PL probes effectively the species near or at the film surface.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lucero, D. M.; Young, L. M.

We present an analysis of new and archival Very Large Array H I observations of a sample of 11 early-type galaxies rich in CO, with detailed comparisons of CO and H I distributions and kinematics. The early-type sample consists of both lenticular and elliptical galaxies in a variety of environments. A range of morphologies and environments were selected in order to give a broader understanding of the origins, distribution, and fate of the cold gas in early-type galaxies. Six of the eleven galaxies in the sample are detected in both H I and CO. The H{sub 2} to H Imore » mass ratios for this sample range from 0.2 to 120. The H I morphologies of the sample are consistent with that of recent H I surveys of early-type galaxies, which also find a mix of H I morphologies and masses, low H I peak surface densities, and a lack of H I in early-type galaxies that reside in high-density environments. The HI-detected galaxies have a wide range of H I masses (1.4 Multiplication-Sign 10{sup 6} to 1.1 Multiplication-Sign 10{sup 10} M{sub Sun }). There does not appear to be any correlation between the H I mass and morphology (E versus S0). When H I is detected, it is centrally peaked-there are no central kiloparsec-scale central H I depressions like those observed for early-type spiral galaxies at similar spatial resolutions and scales. A kinematic comparison between the H I and CO indicates that both cold gas components share the same origin. The primary goal of this and a series of future papers is to better understand the relationship between the atomic and molecular gas in early-type galaxies, and to compare the observed relationships with those of spiral galaxies where this relationship has been studied in depth.« less

Spatial distribution of traffic in a cellular mobile data network

NASA Astrophysics Data System (ADS)

Linnartz, J. P. M. G.

1987-02-01

The use of integral transforms of the probability density function for the received power to analyze the relation between the spatial distributions of offered and throughout packet traffic in a mobile radio network with Rayleigh fading channels and ALOHA multiple access was assessed. A method to obtain the spatial distribution of throughput traffic from a prescribed spatial distribution of offered traffic is presented. Incoherent and coherent addition of interference signals is considered. The channel behavior for heavy traffic loads is studied. In both the incoherent and coherent case, the spatial distribution of offered traffic required to ensure a prescribed spatially uniform throughput is synthesized numerically.

Experimental Bedrock Channel Incision: Scaling, Sculpture and Sediment Transport

NASA Astrophysics Data System (ADS)

Johnson, J. P.; Whipple, K. X.

2004-12-01

Abrasion by sediment in turbulent flows often sculpts bedrock channels into dramatic forms; quantifying the feedbacks between fluid flow, sediment impacts, and channel morphology is needed to refine models of fluvial incision into bedrock. We present data from laboratory flume experiments funded by the National Center for Earth-Surface Dynamics and conducted at St. Anthony Falls Laboratory, University of Minnesota that show how the spatial and temporal distribution of erosion is strongly coupled to the evolving topography of the bed. These experiments focus on the high Froude number and tool-starved end of parameter space, where bed cover tends to be negligible. Independent variables include flume slope, water flux and sediment flux and size distribution. Sediment moves energetically as bedload, suspended load, or locally transitional between transport modes. Quantitative measurements of the evolving bed topography show that the synthetic brittle "bedrock" in the flume (cured sand-cement mixture) eroded to form narrow incised channels with tight scoops and potholes. The experimental erosional forms are similar in morphology, and sometimes in scale, to those observed in natural bedrock rivers in southeast Utah and other field settings. The experiments demonstrate that both the mean and distribution of measured erosion rates change as the bed topography evolves, even with constant water and sediment discharges. Even starting with a plane bed geometry, erosion and sediment transport very quickly become localized in interconnected topographic lows. Positive feedback develops between the evolving topography and the fluid velocity and sediment transport fields, resulting in the incision of an inner channel. Once formed, the erosion rate in the axis of the inner channel decreases as local bed shear stresses and fluid velocities are reduced by increasing wall drag, and sediment fluxes through the channel but causes less incision (no deposition). Decreasing the sediment flux (all else held equal) causes renewed incision, but of an even narrower inner channel; increasing the sediment flux leads to inner channel deposition. Where erosion is most vigorous, sediment generally moving as saltating bedload becomes locally suspended by upward-directed mean flow. For example, swirling clouds of "bedload" particles are continuously suspended by vortices developed within potholes such that the upward flux of particles out of the potholes balance the total sediment flux through the flume. Potholes spontaneously form where average bed slope and fluid velocities were highest, dramatically accelerating the local erosion rate. Our experimental potholes are smaller in scale but morphologically strikingly similar to many observed in the field, and include features such as corkscrew grooves down the outside walls and a protruding horn at the pothole center. More generally, abrasion becomes focused in places where the flow is spatially accelerated, such as in scoops and bends with high curvature. The knife-edge margins and spatial distribution of erosional forms indicate abrupt transitions in erosional efficiency that are tightly coupled to near-bed fluid flow patterns, which in turn are strongly influenced by the erosional forms themselves. Our experiments suggest that, in highly sculpted bedrock channels, naturally developed bed roughness presents a physical length scale that is important to controlling the interaction between sediment impacts and the bed, rather than a length scale based explicitly on sediment transport and average flow conditions such as the saltation hop length.

Modelling rate distributions using character compatibility: implications for morphological evolution among fossil invertebrates.

PubMed

Wagner, Peter J

2012-02-23

Rate distributions are important considerations when testing hypotheses about morphological evolution or phylogeny. They also have implications about general processes underlying character evolution. Molecular systematists often assume that rates are Poisson processes with gamma distributions. However, morphological change is the product of multiple probabilistic processes and should theoretically be affected by hierarchical integration of characters. Both factors predict lognormal rate distributions. Here, a simple inverse modelling approach assesses the best single-rate, gamma and lognormal models given observed character compatibility for 115 invertebrate groups. Tests reject the single-rate model for nearly all cases. Moreover, the lognormal outperforms the gamma for character change rates and (especially) state derivation rates. The latter in particular is consistent with integration affecting morphological character evolution.

Quantitative Clinical Imaging Methods for Monitoring Intratumoral Evolution.

PubMed

Kim, Joo Yeun; Gatenby, Robert A

2017-01-01

Solid tumors are multiscale, open, complex, dynamic systems: complex because they have many interacting components, dynamic because both the components and their interactions can change with time, and open because the tumor freely communicates with surrounding and even distant host tissue. Thus, it is not surprising that striking intratumoral variations are commonly observed in clinical imaging such as MRI and CT and that several recent studies found striking regional variations in the molecular properties of cancer cells from the same tumor. Interestingly, this spatial heterogeneity in molecular properties of tumor cells is typically ascribed to branching clonal evolution due to accumulating mutations while macroscopic variations observed in, for example, clinical MRI scans are usually viewed as functions of blood flow. The clinical significance of spatial heterogeneity has not been fully determined but there is a general consensus that the varying intratumoral landscape along with patient factors such as age, morbidity and lifestyle, contributes significantly to the often unpredictable response of individual patients within a disease cohort treated with the same standard-of-care therapy.Here we investigate the potential link between macroscopic tumor heterogeneity observed by clinical imaging and spatial variations in the observed molecular properties of cancer cells. We build on techniques developed in landscape ecology to link regional variations in the distribution of species with local environmental conditions that define their habitat. That is, we view each region of the tumor as a local ecosystem consisting of environmental conditions such as access to nutrients, oxygen, and means of waste clearance related to blood flow and the local population of tumor cells that both adapt to these conditions and, to some extent, change them through, for example, production of angiogenic factors. Furthermore, interactions among neighboring habitats can produce broader regional dynamics so that the internal diversity of tumors is the net result of complex multiscale somatic Darwinian interactions.Methods in landscape ecology harness Darwinian dynamics to link the environmental properties of a given region to the local populations which are assumed to represent maximally fit phenotypes within those conditions. Consider a common task of a landscape ecologist: defining the spatial distribution of species in a large region, e.g., in a satellite image. Clearly the most accurate approach requires a meter by meter survey of the multiple square kilometers in the region of interest. However, this is both impractical and potentially destructive. Instead, landscape ecology breaks the task into component parts relying on the Darwinian interdependence of environmental properties and fitness of specific species' phenotypic and genotypic properties. First, the satellite map is carefully analyzed to define the number and distribution of habitats. Then the species distribution in a representative sampling of each habitat is empirically determined. Ultimately, this permits sufficient bridging of spatial scales to accurately predict spatial distribution of plant and animal species within large regions.Currently, identifying intratumoral subpopulations requires detailed histological and molecular studies that are expensive and time consuming. Furthermore, this method is subject to sampling bias, is invasive for vital organs such as the brain, and inherently destructive precluding repeated assessments for monitoring post-treatment response and proteogenomic evolution. In contrast, modern cross-sectional imaging can interrogate the entire tumor noninvasively, allowing repeated analysis without disrupting the region of interest. In particular, magnetic resonance imaging (MRI) provides exceptional spatial resolution and generates signals that are unique to the molecular constituents of tissue. Here we propose that MRI scans may be the equivalent of satellite images in landscape ecology and, with appropriate application of Darwinian first principles and sophisticated image analytic methods, can be used to estimate regional variations in the molecular properties of cancer cells.We have initially examined this technique in glioblastoma, a malignant brain neoplasm which is morphologically complex and notorious for a fast progression from diagnosis to recurrence and death, making a suitable subject of noninvasive, rapidly repeated assessment of intratumoral evolution. Quantitative imaging analysis of routine clinical MRIs from glioblastoma has identified macroscopic morphologic characteristics which correlate with proteogenomics and prognosis. The key to the accurate detection and forecasting of intratumoral evolution using quantitative imaging analysis is likely to be in the understanding of the synergistic interactions between observable intratumoral subregions and the resulting tumor behavior.

Predicting the morphologies of γ' precipitates in cobalt-based superalloys

DOE PAGES

Jokisaari, Andrea M.; Naghavi, S. S.; Wolverton, C.; ...

2017-09-06

Cobalt-based alloys with γ/γ' microstructures have the potential to become the next generation of superalloys, but alloy compositions and processing steps must be optimized to improve coarsening, creep, and rafting behavior. While these behaviors are different than in nickel-based superalloys, alloy development can be accelerated by understanding the thermodynamic factors influencing microstructure evolution. In this work, we develop a phase field model informed by first-principles density functional theory and experimental data to predict the equilibrium shapes of Co-Al-W γ' precipitates. Three-dimensional simulations of single and multiple precipitates are performed to understand the effect of elastic and interfacial energy on coarsenedmore » and rafted microstructures; the elastic energy is dependent on the elastic stiffnesses, misfit strain, precipitate size, applied stress, and precipitate spatial distribution. We observe characteristic microstructures dependent on the type of applied stress that have the same γ' morphology and orientation seen in experiments, indicating that the elastic stresses arising from coherent γ/γ' interfaces are important for morphological evolution during creep. Here, the results also indicate that the narrow γ channels between γ' precipitates are energetically favored, and provide an explanation for the experimentally observed directional coarsening that occurs without any applied stress.« less

Controlling Molecular Doping in Organic Semiconductors.

PubMed

Jacobs, Ian E; Moulé, Adam J

2017-11-01

The field of organic electronics thrives on the hope of enabling low-cost, solution-processed electronic devices with mechanical, optoelectronic, and chemical properties not available from inorganic semiconductors. A key to the success of these aspirations is the ability to controllably dope organic semiconductors with high spatial resolution. Here, recent progress in molecular doping of organic semiconductors is summarized, with an emphasis on solution-processed p-type doped polymeric semiconductors. Highlighted topics include how solution-processing techniques can control the distribution, diffusion, and density of dopants within the organic semiconductor, and, in turn, affect the electronic properties of the material. Research in these areas has recently intensified, thanks to advances in chemical synthesis, improved understanding of charged states in organic materials, and a focus on relating fabrication techniques to morphology. Significant disorder in these systems, along with complex interactions between doping and film morphology, is often responsible for charge trapping and low doping efficiency. However, the strong coupling between doping, solubility, and morphology can be harnessed to control crystallinity, create doping gradients, and pattern polymers. These breakthroughs suggest a role for molecular doping not only in device function but also in fabrication-applications beyond those directly analogous to inorganic doping. © 2017 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Prevalence and spatial distribution of intraerythrocytic parasite(s) in Puget Sound rockfish (Sebastes emphaeus) from the San Juan Archipelago, Washington (USA)

USGS Publications Warehouse

Van Der Straaten, N.; Jacobson, A.; Halos, D.; Hershberger, P.; Kocan, A.A.; Kocan, R.

2005-01-01

Two morphologically distinct forms of an intraerythrocytic parasite(s) were detected by microscopic observation of Giemsa-stained blood films in 45.7% of 119 rockfish (Sebastes emphaeus) from the San Juan Archipelago (Washington State, U.S.A.). Infection prevalence for both forms was 53% in males, 44% in females, and 33% in fish of undetermined gender. A binucleate "ring-stage" was present at all 4 geographic sites, with a mean prevalence of 45.7%, while mean prevalence of a larger gamont-like form from the same sites was 5.1%. The relationship of the 2 forms to each other could not be determined. Neither schizogony nor binary fission was evident in any of the infected erythrocytes and the parasites contained no obvious pigment. The possibility of the 2 morphologic forms being 2 distinct species is supported by the observation that no difference in parasitemia was seen in the binucleate form among sites (1.6-1.9%), while parasitemia of the gamont-like form varied significantly among sites, ranging from a high of 4% to a low of 0.1%. Taxonomic status of either form could not be determined at this time based on limited existing morphologic data. ?? American Society of Parasitologists 2005.

Spatial patterns of distribution and abundance of Harrisia portoricensis, an endangered Caribbean cactus

Treesearch

J. Rojas-Sandoval; E. J. Melendez-Ackerman; NO-VALUE

2013-01-01

Aims The spatial distribution of biotic and abiotic factors may play a dominant role in determining the distribution and abundance of plants in arid and semiarid environments. In this study, we evaluated how spatial patterns of microhabitat variables and the degree of spatial dependence of these variables influence the distribution and abundance of the endangered...

[Spatial distribution pattern of Chilo suppressalis analyzed by classical method and geostatistics].

PubMed

Yuan, Zheming; Fu, Wei; Li, Fangyi

2004-04-01

Two original samples of Chilo suppressalis and their grid, random and sequence samples were analyzed by classical method and geostatistics to characterize the spatial distribution pattern of C. suppressalis. The limitations of spatial distribution analysis with classical method, especially influenced by the original position of grid, were summarized rather completely. On the contrary, geostatistics characterized well the spatial distribution pattern, congregation intensity and spatial heterogeneity of C. suppressalis. According to geostatistics, the population was up to Poisson distribution in low density. As for higher density population, its distribution was up to aggregative, and the aggregation intensity and dependence range were 0.1056 and 193 cm, respectively. Spatial heterogeneity was also found in the higher density population. Its spatial correlativity in line direction was more closely than that in row direction, and the dependence ranges in line and row direction were 115 and 264 cm, respectively.

Importance of spatial autocorrelation in modeling bird distributions at a continental scale

USGS Publications Warehouse

Bahn, V.; O'Connor, R.J.; Krohn, W.B.

2006-01-01

Spatial autocorrelation in species' distributions has been recognized as inflating the probability of a type I error in hypotheses tests, causing biases in variable selection, and violating the assumption of independence of error terms in models such as correlation or regression. However, it remains unclear whether these problems occur at all spatial resolutions and extents, and under which conditions spatially explicit modeling techniques are superior. Our goal was to determine whether spatial models were superior at large extents and across many different species. In addition, we investigated the importance of purely spatial effects in distribution patterns relative to the variation that could be explained through environmental conditions. We studied distribution patterns of 108 bird species in the conterminous United States using ten years of data from the Breeding Bird Survey. We compared the performance of spatially explicit regression models with non-spatial regression models using Akaike's information criterion. In addition, we partitioned the variance in species distributions into an environmental, a pure spatial and a shared component. The spatially-explicit conditional autoregressive regression models strongly outperformed the ordinary least squares regression models. In addition, partialling out the spatial component underlying the species' distributions showed that an average of 17% of the explained variation could be attributed to purely spatial effects independent of the spatial autocorrelation induced by the underlying environmental variables. We concluded that location in the range and neighborhood play an important role in the distribution of species. Spatially explicit models are expected to yield better predictions especially for mobile species such as birds, even in coarse-grained models with a large extent. ?? Ecography.

Evaluation of illumination system uniformity for wide-field biomedical hyperspectral imaging

NASA Astrophysics Data System (ADS)

Sawyer, Travis W.; Siri Luthman, A.; E Bohndiek, Sarah

2017-04-01

Hyperspectral imaging (HSI) systems collect both spatial (morphological) and spectral (chemical) information from a sample. HSI can provide sensitive analysis for biological and medical applications, for example, simultaneously measuring reflectance and fluorescence properties of a tissue, which together with structural information could improve early cancer detection and tumour characterisation. Illumination uniformity is a critical pre-condition for quantitative data extraction from an HSI system. Non-uniformity can cause glare, specular reflection and unwanted shading, which negatively impact statistical analysis procedures used to extract abundance of different chemical species. Here, we model and evaluate several illumination systems frequently used in wide-field biomedical imaging to test their potential for HSI. We use the software LightTools and FRED. The analysed systems include: a fibre ring light; a light emitting diode (LED) ring; and a diffuse scattering dome. Each system is characterised for spectral, spatial, and angular uniformity, as well as transfer efficiency. Furthermore, an approach to measure uniformity using the Kullback-Leibler divergence (KLD) is introduced. The KLD is generalisable to arbitrary illumination shapes, making it an attractive approach for characterising illumination distributions. Although the systems are quite comparable in their spatial and spectral uniformity, the most uniform angular distribution is achieved using a diffuse scattering dome, yielding a contrast of 0.503 and average deviation of 0.303 over a ±60° field of view with a 3.9% model error in the angular domain. Our results suggest that conventional illumination sources can be applied in HSI, but in the case of low light levels, bespoke illumination sources may offer improved performance.

Effects of uncertain topographic input data on two-dimensional flow modeling in a gravel-bed river

USGS Publications Warehouse

Legleiter, C.J.; Kyriakidis, P.C.; McDonald, R.R.; Nelson, J.M.

2011-01-01

Many applications in river research and management rely upon two-dimensional (2D) numerical models to characterize flow fields, assess habitat conditions, and evaluate channel stability. Predictions from such models are potentially highly uncertain due to the uncertainty associated with the topographic data provided as input. This study used a spatial stochastic simulation strategy to examine the effects of topographic uncertainty on flow modeling. Many, equally likely bed elevation realizations for a simple meander bend were generated and propagated through a typical 2D model to produce distributions of water-surface elevation, depth, velocity, and boundary shear stress at each node of the model's computational grid. Ensemble summary statistics were used to characterize the uncertainty associated with these predictions and to examine the spatial structure of this uncertainty in relation to channel morphology. Simulations conditioned to different data configurations indicated that model predictions became increasingly uncertain as the spacing between surveyed cross sections increased. Model sensitivity to topographic uncertainty was greater for base flow conditions than for a higher, subbankfull flow (75% of bankfull discharge). The degree of sensitivity also varied spatially throughout the bend, with the greatest uncertainty occurring over the point bar where the flow field was influenced by topographic steering effects. Uncertain topography can therefore introduce significant uncertainty to analyses of habitat suitability and bed mobility based on flow model output. In the presence of such uncertainty, the results of these studies are most appropriately represented in probabilistic terms using distributions of model predictions derived from a series of topographic realizations. Copyright 2011 by the American Geophysical Union.

Mapping of hemoglobin in erythrocytes and erythrocyte ghosts using two photon excitation fluorescence microscopy

NASA Astrophysics Data System (ADS)

Bukara, Katarina; Jovanić, Svetlana; Drvenica, Ivana T.; Stančić, Ana; Ilić, Vesna; Rabasović, Mihailo D.; Pantelić, Dejan; Jelenković, Branislav; Bugarski, Branko; Krmpot, Aleksandar J.

2017-02-01

The present study describes utilization of two photon excitation fluorescence (2PE) microscopy for visualization of the hemoglobin in human and porcine erythrocytes and their empty membranes (i.e., ghosts). High-quality, label- and fixation-free visualization of hemoglobin was achieved at excitation wavelength 730 nm by detecting visible autofluorescence. Localization in the suspension and spatial distribution (i.e., mapping) of residual hemoglobin in erythrocyte ghosts has been resolved by 2PE. Prior to the 2PE mapping, the presence of residual hemoglobin in the bulk suspension of erythrocyte ghosts was confirmed by cyanmethemoglobin assay. 2PE analysis revealed that the distribution of hemoglobin in intact erythrocytes follows the cells' shape. Two types of erythrocytes, human and porcine, characterized with discocyte and echinocyte morphology, respectively, showed significant differences in hemoglobin distribution. The 2PE images have revealed that despite an extensive washing out procedure after gradual hypotonic hemolysis, a certain amount of hemoglobin localized on the intracellular side always remains bound to the membrane and cannot be eliminated. The obtained results open the possibility to use 2PE microscopy to examine hemoglobin distribution in erythrocytes and estimate the purity level of erythrocyte ghosts in biotechnological processes.

Using genetic and phenotypic comparisons to evaluate apparent segregation among Kokanee spawning groups

USGS Publications Warehouse

Whitlock, Steven L.; Campbell, Matthew R.; Quist, Michael C.; Dux, Andrew M.

2018-01-01

Genetic and phenotypic traits of spatially and temporally segregated kokanee Oncorhynchus nerka spawning groups in Lake Pend Oreille, Idaho, were compared to test for evidence of divergence on the basis of ecotype (stream spawners versus shoreline spawners) and spawn timing and to describe morphological, life history, and reproductive variation within and among groups. Early and late spawning runs were found to be reproductively isolated; however, there was no clear evidence of genetic differentiation between ecotypes. Spawning groups within the same ecotype differed in length, age distribution, mean length at age, fecundity, and egg size. Variation in reproductive attributes was due primarily to differences in length distributions. Larger‐bodied shore‐spawning kokanee were located in areas where egg survival is known to be enhanced by downwelling, suggesting that the distribution of shore‐spawning kokanee may be partly structured by competition for spawning habitats with groundwater influence. This study contributes to other research indicating that introduced kokanee populations are unlikely to undergo adaptive divergence if they have a history of population fluctuations and are supplemented regularly.

Mid-late Holocene climate variability in the Indian monsoon: Evidence from continental shelf sediments adjacent to Rushikulya river, eastern India

NASA Astrophysics Data System (ADS)

Ankit, Yadav; Kumar, Prem; Anoop, Ambili; Mishra, Praveen K.; Varghese, Saju

2017-04-01

We present elemental and grain-size distributions obtained from the sediment core of the continental shelf adjacent to the Rushikulya river mouth, eastern India to quantify the paleoclimatic changes. The retrieved 1.60 m long well-dated core spans the past ca. 6800 cal BP. The modern spatial distribution of grain size and geochemistry of the inner-mid shelf sediments has been carried out to understand the seafloor morphology and sedimentary processes. Based on the mod- ern investigations, the proportion of particle size (clay vs sand) and variation in elemental values (TiO2 vs Al2O3) has been used to interpret the changes in terrigenous supply. The grain-size and elemental distribution data from the core sediments indicates a period of enhanced surface water runoff from 6800 to 3100 cal BP followed by a drier condition (3100 cal BP to present) suggesting weakening of monsoon. The weakening of the monsoonal strength is coeval with other records from the Indian sub-continent and suggests response of Indian monsoon to changing solar insolation during late Holocene.

Taxonomy and Distribution of Freshwater Pearl Mussels (Unionoida: Margaritiferidae) of the Russian Far East

PubMed Central

Bolotov, Ivan N.; Bespalaya, Yulia V.; Vikhrev, Ilya V.; Aksenova, Olga V.; Aspholm, Paul E.; Gofarov, Mikhail Y.; Klishko, Olga K.; Kolosova, Yulia S.; Kondakov, Alexander V.; Lyubas, Artyom A.; Paltser, Inga S.; Konopleva, Ekaterina S.; Tumpeesuwan, Sakboworn; Bolotov, Nikita I.; Voroshilova, Irina S.

2015-01-01

The freshwater pearl mussel family Margaritiferidae includes 13 extant species, which are all listed by IUCN as endangered or vulnerable taxa. In this study, an extensive spatial sampling of Margaritifera spp. across the Russian Far East (Amur Basin, Kamchatka Peninsula, Kurile Archipelago and Sakhalin Island) was conducted for a revision of their taxonomy and distribution ranges. Based on their DNA sequences, shell and soft tissue morphology, three valid species were identified: Margaritifera dahurica (Middendorff, 1850), M. laevis (Haas, 1910) and M. middendorffi (Rosén, 1926). M. dahurica ranges across the Amur basin and some of the nearest river systems. M. laevis is distributed in Japan, Sakhalin Island and the Kurile Archipelago. M. middendorffi was previously considered an endemic species of the Kamchatka. However, it is widespread in the rivers of Kamchatka, Sakhalin Island, the Kurile Islands (across the Bussol Strait, which is the most significant biogeographical boundary within the archipelago), and, likely, in Japan. The Japanese species M. togakushiensis Kondo & Kobayashi, 2005 seems to be conspecific with M. middendorffi because of similar morphological patterns, small shell size (<100 mm long) and overlapped ranges, but it is in need of a separate revision. Phylogenetic analysis reveals that two NW Pacific margaritiferid species, M. laevis and M. middendorffi, formed a monophyletic 18S rDNA clade together with the North American species M. marrianae and M. falcata. The patterns that were found in these Margaritifera spp. are similar to those of freshwater fishes, indicating multiple colonizations of Eastern Asia by different mitochondrial lineages, including an ancient Beringian exchange between freshwater faunas across the Pacific. PMID:26011762

Biophysics Model of Heavy-Ion Degradation of Neuron Morphology in Mouse Hippocampal Granular Cell Layer Neurons.

PubMed

Alp, Murat; Cucinotta, Francis A

2018-03-01

Exposure to heavy-ion radiation during cancer treatment or space travel may cause cognitive detriments that have been associated with changes in neuron morphology and plasticity. Observations in mice of reduced neuronal dendritic complexity have revealed a dependence on radiation quality and absorbed dose, suggesting that microscopic energy deposition plays an important role. In this work we used morphological data for mouse dentate granular cell layer (GCL) neurons and a stochastic model of particle track structure and microscopic energy deposition (ED) to develop a predictive model of high-charge and energy (HZE) particle-induced morphological changes to the complex structures of dendritic arbors. We represented dendrites as cylindrical segments of varying diameter with unit aspect ratios, and developed a fast sampling method to consider the stochastic distribution of ED by δ rays (secondary electrons) around the path of heavy ions, to reduce computational times. We introduce probabilistic models with a small number of parameters to describe the induction of precursor lesions that precede dendritic snipping, denoted as snip sites. Predictions for oxygen ( 16 O, 600 MeV/n) and titanium ( 48 Ti, 600 MeV/n) particles with LET of 16.3 and 129 keV/μm, respectively, are considered. Morphometric parameters to quantify changes in neuron morphology are described, including reduction in total dendritic length, number of branch points and branch numbers. Sholl analysis is applied for single neurons to elucidate dose-dependent reductions in dendritic complexity. We predict important differences in measurements from imaging of tissues from brain slices with single neuron cell observations due to the role of neuron death through both soma apoptosis and excessive dendritic length reduction. To further elucidate the role of track structure, random segment excision (snips) models are introduced and a sensitivity study of the effects of the modes of neuron death in predictions of morphometric parameters is described. An important conclusion of this study is that δ rays play a major role in neuron morphological changes due to the large spatial distribution of damage sites, which results in a reduced dependence on LET, including modest difference between 16 O and 48 Ti, compared to damages resulting from ED in localized damage sites.

Intra-flow morphology variations within a single submarine flow: the 2005-2006 East Pacific Rise eruption

NASA Astrophysics Data System (ADS)

Fundis, A. T.; Soule, S.; Fornari, D. J.; Perfit, M. R.

2009-12-01

The 2005-2006 eruption near 9°50‧N marked the first observed repeat eruption at a mid-ocean ridge and provided a unique opportunity to deduce the emplacement dynamics of a single eruptive event. Since this new flow was documented in April 2006, a total of 41 deep-towed imaging surveys have been conducted with the Woods Hole Oceanographic Institution’s (WHOI) TowCam system. These surveys collected more than 60,000 digital color images and high-resolution (+ 10 cm) bathymetric profiles. We have analyzed the surface morphology of the flow using this data at a level of detail that has never before been possible. Pre-existing slope has been determined using bathymetric data previously collected with WHOI’s Autonomous Benthic Explorer and 30 kHz Simrad EM300 multibeam system. Our analyses quantify the spatial distributions of lava flow surface morphologies and allow us to investigate how these various morphologies relate to the physical characteristics of the ridge and dynamics of flow emplacement. Images of the 2005-2006 flow from each of the TowCam surveys were analyzed for lava flow morphology, the orientation of flow direction indicators, and for the presence of kipukas, collapse, faults and fissures. Our results support previous studies (Fornari et al., 1998, 2004; Soule et al., 2005) that suggest most of the 2005-2006 flows originated from nearly continuous fissures as discrete flow units and subsequently followed pre-existing bathymetric lows and flow channels away from the AST. These flow channels, found predominantly on the eastern flank of the ridge axis at ~9°50‧N, are primarily composed of transitions between sheet and hackly flows. The flows north of 9°53‧ and south of 9°49‧ are predominantly lobate flows with a high abundance of kipukas (<1 - 5 m diameter). The centers of lava channels that served as distribution pathways during the eruption tend to be characterized by sheet flows, while hackly flows that transition into lobate define the edges of the channels. Pillows, that are relatively rare, are concentrated at the termini of the flow lobes. The data indicate that the pre-existing slope did not influence the development of various morphologies of the 2005-2006 eruption.

STATISTICAL PROPERTIES OF SOLAR ACTIVE REGIONS OBTAINED FROM AN AUTOMATIC DETECTION SYSTEM AND THE COMPUTATIONAL BIASES

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zhang Jie; Wang Yuming; Liu Yang, E-mail: jzhang7@gmu.ed

We have developed a computational software system to automate the process of identifying solar active regions (ARs) and quantifying their physical properties based on high-resolution synoptic magnetograms constructed from Michelson Doppler Imager (MDI; on board the SOHO spacecraft) images from 1996 to 2008. The system, based on morphological analysis and intensity thresholding, has four functional modules: (1) intensity segmentation to obtain kernel pixels, (2) a morphological opening operation to erase small kernels, which effectively remove ephemeral regions and magnetic fragments in decayed ARs, (3) region growing to extend kernels to full AR size, and (4) the morphological closing operation tomore » merge/group regions with a small spatial gap. We calculate the basic physical parameters of the 1730 ARs identified by the auto system. The mean and maximum magnetic flux of individual ARs are 1.67 x 10{sup 22} Mx and 1.97 x 10{sup 23} Mx, while that per Carrington rotation are 1.83 x 10{sup 23} Mx and 6.96 x 10{sup 23} Mx, respectively. The frequency distributions of ARs with respect to both area size and magnetic flux follow a log-normal function. However, when we decrease the detection thresholds and thus increase the number of detected ARs, the frequency distribution largely follows a power-law function. We also find that the equatorward drifting motion of the AR bands with solar cycle can be described by a linear function superposed with intermittent reverse driftings. The average drifting speed over one solar cycle is 1{sup o}.83{+-}0{sup o}.04 yr{sup -1} or 0.708 {+-} 0.015 m s{sup -1}.« less

Integrating Sediment Connectivity into Water Resources Management Trough a Graph Theoretic, Stochastic Modeling Framework.

NASA Astrophysics Data System (ADS)

Schmitt, R. J. P.; Castelletti, A.; Bizzi, S.

2014-12-01

Understanding sediment transport processes at the river basin scale, their temporal spectra and spatial patterns is key to identify and minimize morphologic risks associated to channel adjustments processes. This work contributes a stochastic framework for modeling bed-load connectivity based on recent advances in the field (e.g., Bizzi & Lerner, 2013; Czubas & Foufoulas-Georgiu, 2014). It presents river managers with novel indicators from reach scale vulnerability to channel adjustment in large river networks with sparse hydrologic and sediment observations. The framework comprises three steps. First, based on a distributed hydrological model and remotely sensed information, the framework identifies a representative grain size class for each reach. Second, sediment residence time distributions are calculated for each reach in a Monte-Carlo approach applying standard sediment transport equations driven by local hydraulic conditions. Third, a network analysis defines the up- and downstream connectivity for various travel times resulting in characteristic up/downstream connectivity signatures for each reach. Channel vulnerability indicators quantify the imbalance between up/downstream connectivity for each travel time domain, representing process dependent latency of morphologic response. Last, based on the stochastic core of the model, a sensitivity analysis identifies drivers of change and major sources of uncertainty in order to target key detrimental processes and to guide effective gathering of additional data. The application, limitation and integration into a decision analytic framework is demonstrated for a major part of the Red River Basin in Northern Vietnam (179.000 km2). Here, a plethora of anthropic alterations ranging from large reservoir construction to land-use changes results in major downstream deterioration and calls for deriving concerted sediment management strategies to mitigate current and limit future morphologic alterations.

Spatial bedrock erosion distribution in a natural gorge

NASA Astrophysics Data System (ADS)

Beer, A. R.; Turowski, J. M.; Kirchner, J. W.

2015-12-01

Quantitative analysis of morphological evolution both in terrestrial and planetary landscapes is of increasing interest in the geosciences. In mountainous regions, bedrock channel formation as a consequence of the interaction of uplift and erosion processes is fundamental for the entire surface evolution. Hence, the accurate description of bedrock channel development is important for landscape modelling. To verify existing concepts developed in the lab and to analyse how in situ channel erosion rates depend on the interrelations of discharge, sediment transport and topography, there is a need of highly resolved topographic field data. We analyse bedrock erosion over two years in a bedrock gorge downstream of the Gorner glacier above the town of Zermatt, Switzerland. At the study site, the Gornera stream cuts through a roche moutonnée in serpentine rock of 25m length, 5m width and 8m depth. We surveyed bedrock erosion rates using repeat terrestrial laser scanning (TLS) with an average point spacing of 5mm. Bedrock erosion rates in direction of the individual surface normals were studied directly on the scanned point clouds applying the M3C2 algorithm (Lague et al., 2013, ISPRS). The surveyed erosion patterns were compared to a simple stream erosivity visualisation obtained from painted bedrock sections at the study location. Spatially distributed erosion rates on bedrock surfaces based on millions of scan points allow deduction of millimeter-scale mean annual values of lateral erosion, incision and downstream erosion on protruding streambed surfaces. The erosion rate on a specific surface point is shown to depend on the position of this surface point in the channel's cross section, its height above the streambed and its spatial orientation to the streamflow. Abrasion by impacting bedload was likely the spatially dominant erosion process, as confirmed by the observed patterns along the painted bedrock sections. However, a single plucking event accounted for the half of the total eroded material. Our results demonstrate the practicability of TLS for highly resolved spatio-temporal erosion monitoring in the field and quantitatively confirm concepts of spatially varying erosion rates based current thinking. Furthermore, we introduce an easy-to-apply method for qualitative spatial erosion detection by paint.

The Syntax-Semantics Interface in Distributed Morphology

ERIC Educational Resources Information Center

Kelly, Justin Robert

2013-01-01

Distributed Morphology (DM; Halle & Marantz 1993; Marantz 1997) is founded on the premise that the syntax is the only computational component of the grammar. Much research focuses on how this premise is relevant to the syntax-morphology interface in DM. In this dissertation, I examine theory-internal issues related to the syntax-semantics…

Models and simulation of 3D neuronal dendritic trees using Bayesian networks.

PubMed

López-Cruz, Pedro L; Bielza, Concha; Larrañaga, Pedro; Benavides-Piccione, Ruth; DeFelipe, Javier

2011-12-01

Neuron morphology is crucial for neuronal connectivity and brain information processing. Computational models are important tools for studying dendritic morphology and its role in brain function. We applied a class of probabilistic graphical models called Bayesian networks to generate virtual dendrites from layer III pyramidal neurons from three different regions of the neocortex of the mouse. A set of 41 morphological variables were measured from the 3D reconstructions of real dendrites and their probability distributions used in a machine learning algorithm to induce the model from the data. A simulation algorithm is also proposed to obtain new dendrites by sampling values from Bayesian networks. The main advantage of this approach is that it takes into account and automatically locates the relationships between variables in the data instead of using predefined dependencies. Therefore, the methodology can be applied to any neuronal class while at the same time exploiting class-specific properties. Also, a Bayesian network was defined for each part of the dendrite, allowing the relationships to change in the different sections and to model heterogeneous developmental factors or spatial influences. Several univariate statistical tests and a novel multivariate test based on Kullback-Leibler divergence estimation confirmed that virtual dendrites were similar to real ones. The analyses of the models showed relationships that conform to current neuroanatomical knowledge and support model correctness. At the same time, studying the relationships in the models can help to identify new interactions between variables related to dendritic morphology.

A statistical approach to root system classification

PubMed Central

Bodner, Gernot; Leitner, Daniel; Nakhforoosh, Alireza; Sobotik, Monika; Moder, Karl; Kaul, Hans-Peter

2013-01-01

Plant root systems have a key role in ecology and agronomy. In spite of fast increase in root studies, still there is no classification that allows distinguishing among distinctive characteristics within the diversity of rooting strategies. Our hypothesis is that a multivariate approach for “plant functional type” identification in ecology can be applied to the classification of root systems. The classification method presented is based on a data-defined statistical procedure without a priori decision on the classifiers. The study demonstrates that principal component based rooting types provide efficient and meaningful multi-trait classifiers. The classification method is exemplified with simulated root architectures and morphological field data. Simulated root architectures showed that morphological attributes with spatial distribution parameters capture most distinctive features within root system diversity. While developmental type (tap vs. shoot-borne systems) is a strong, but coarse classifier, topological traits provide the most detailed differentiation among distinctive groups. Adequacy of commonly available morphologic traits for classification is supported by field data. Rooting types emerging from measured data, mainly distinguished by diameter/weight and density dominated types. Similarity of root systems within distinctive groups was the joint result of phylogenetic relation and environmental as well as human selection pressure. We concluded that the data-define classification is appropriate for integration of knowledge obtained with different root measurement methods and at various scales. Currently root morphology is the most promising basis for classification due to widely used common measurement protocols. To capture details of root diversity efforts in architectural measurement techniques are essential. PMID:23914200

A statistical approach to root system classification.

PubMed

Bodner, Gernot; Leitner, Daniel; Nakhforoosh, Alireza; Sobotik, Monika; Moder, Karl; Kaul, Hans-Peter

2013-01-01

Plant root systems have a key role in ecology and agronomy. In spite of fast increase in root studies, still there is no classification that allows distinguishing among distinctive characteristics within the diversity of rooting strategies. Our hypothesis is that a multivariate approach for "plant functional type" identification in ecology can be applied to the classification of root systems. The classification method presented is based on a data-defined statistical procedure without a priori decision on the classifiers. The study demonstrates that principal component based rooting types provide efficient and meaningful multi-trait classifiers. The classification method is exemplified with simulated root architectures and morphological field data. Simulated root architectures showed that morphological attributes with spatial distribution parameters capture most distinctive features within root system diversity. While developmental type (tap vs. shoot-borne systems) is a strong, but coarse classifier, topological traits provide the most detailed differentiation among distinctive groups. Adequacy of commonly available morphologic traits for classification is supported by field data. Rooting types emerging from measured data, mainly distinguished by diameter/weight and density dominated types. Similarity of root systems within distinctive groups was the joint result of phylogenetic relation and environmental as well as human selection pressure. We concluded that the data-define classification is appropriate for integration of knowledge obtained with different root measurement methods and at various scales. Currently root morphology is the most promising basis for classification due to widely used common measurement protocols. To capture details of root diversity efforts in architectural measurement techniques are essential.

Linkages Between Upwelling and Shell Characteristics of Mytilus californianus: Morphology and Stable Isotope (δ13C, δ18O) Signatures of a Carbonate Archive from the California Current

NASA Astrophysics Data System (ADS)

Hosfelt, J. D.; Hill, T. M.; Russell, A. D.; Bean, J. R.; Sanford, E.; Gaylord, B.

2014-12-01

Many calcareous organisms are known to record the ambient environmental conditions in which they grow, and their calcium carbonate skeletons are often valuable archives of climate records. Mytilus californianus, a widely distributed species of intertidal mussel, experiences a spatial mosaic of oceanographic conditions as it grows within the California Current System. Periodic episodes of upwelling bring high-CO2 waters to the surface, during which California coastal waters are similar to projected conditions and act as a natural analogue to future ocean acidification. To examine the link between upwelling and shell characteristics of M. californianus, we analyzed the morphology and stable isotope (δ13C, δ18O) signatures of mussel specimens collected live from seven study sites within the California Current System. Morphometric analyses utilized a combination of elliptic Fourier analysis and shell thickness measurements to determine the influence of low pH waters on the growth morphology and ecological fitness of M. californianus. These geochemical and morphological analyses were compared with concurrent high-resolution environmental (T, S, pH, TA, DIC) records from these seven study sites from 2010-2013. With appropriate calibration, new archives from modern M. californianus shells could provide a valuable tool to enable environmental reconstructions within the California Current System. These archives could in turn be used to predict the future consequences of continuing ocean acidification, as well as reconstruct past (archeological) conditions.

Experimental simulation and morphological quantification of volcano growth

NASA Astrophysics Data System (ADS)

Grosse, Pablo; Kervyn, Matthieu; Gallland, Olivier; Delcamp, Audray; Poppe, Sam

2016-04-01

Volcanoes display very diverse morphologies as a result of a complex interplay of several constructive and destructive processes. Here the role played by the spatial distribution of eruption centre and by an underlying strike-slip fault in controlling the long term growth of volcanoes is investigated with analogue models. Volcano growth was simulated by depositing loads of granular material (sand-kaolin mixtures) from a point source. An individual load deposited at a fixed location produces a simple symmetrical cone with flank slopes at the angle of repose of the granular material (~33°) that can be considered as the building-block for the experiments. Two sets of experiments were undertaken: (1) the location of deposition of the granular material (i.e. the volcano growth location) was shifted with time following specific probability density functions simulating shifts or migrations in vent location; (2) the location of deposition was kept fixed, but the deposition rate (i.e. the volcano growth rate) was varied coupled with the movement of a basal plate attached to a step-motor simulating a strike-slip displacement under the growing cone (and hence deformation of the cone). During the progression of the experiments, the models were photographed at regular time intervals using four digital cameras positioned at slightly different angles over the models. The photographs were used to generate synthetic digital elevation models (DEMs) with 0.2 mm spatial resolution of each step of the models by applying the MICMAC digital stereo-photogrammetry software. Morphometric data were extracted from the DEMs by applying two IDL-language algorithms: NETVOLC, used to automatically calculate the volcano edifice basal outline, and MORVOLC, used to extract a set of morphometric parameters that characterize the volcano edifice in terms of size, plan shape, profile shape and slopes. Analysis of the DEM-derived morphometric parameters allows to quantitatively characterize the growth evolution of the volcano models in terms of vent distribution and growth rate-deformation rate ratios.

MODELING SNR CASSIOPEIA A FROM THE SUPERNOVA EXPLOSION TO ITS CURRENT AGE: THE ROLE OF POST-EXPLOSION ANISOTROPIES OF EJECTA

DOE Office of Scientific and Technical Information (OSTI.GOV)

Orlando, S.; Miceli, M.; Pumo, M. L.

The remnants of core-collapse supernovae (SNe) have complex morphologies that may reflect asymmetries and structures developed during the progenitor SN explosion. Here we investigate how the morphology of the supernova remnant Cassiopeia A (Cas A) reflects the characteristics of the progenitor SN with the aim of deriving the energies and masses of the post-explosion anisotropies responsible for the observed spatial distribution of Fe and Si/S. We model the evolution of Cas A from the immediate aftermath of the progenitor SN to the three-dimensional interaction of the remnant with the surrounding medium. The post-explosion structure of the ejecta is described bymore » small-scale clumping of material and larger-scale anisotropies. The hydrodynamic multi-species simulations consider an appropriate post-explosion isotopic composition of the ejecta. The observed average expansion rate and shock velocities can be well reproduced by models with ejecta mass M {sub ej} ≈ 4 M {sub ⊙} and explosion energy E {sub SN} ≈ 2.3 × 10{sup 51} erg. The post-explosion anisotropies (pistons) reproduce the observed distributions of Fe and Si/S if they had a total mass of ≈0.25 M {sub ⊙} and a total kinetic energy of ≈1.5 × 10{sup 50} erg. The pistons produce a spatial inversion of ejecta layers at the epoch of Cas A, leading to the Si/S-rich ejecta physically interior to the Fe-rich ejecta. The pistons are also responsible for the development of the bright rings of Si/S-rich material which form at the intersection between the reverse shock and the material accumulated around the pistons during their propagation. Our result supports the idea that the bulk of asymmetries observed in Cas A are intrinsic to the explosion.« less

A young bipolar outflow from IRAS 15398-3359

NASA Astrophysics Data System (ADS)

Bjerkeli, P.; Jørgensen, J. K.; Brinch, C.

2016-03-01

Context. Changing physical conditions in the vicinity of protostars allow for a rich and interesting chemistry to occur. Heating and cooling of the gas allows molecules to be released from and frozen out on dust grains. These changes in physics, traced by chemistry as well as the kinematical information, allows us to distinguish between different scenarios describing the infall of matter and the launching of molecular outflows and jets. Aims: We aim to determine the spatial distribution of different species that are of different chemical origin. This is to examine the physical processes in play in the observed region. From the kinematical information of the emission lines we aim to determine the nature of the infalling and outflowing gas in the system. We also aim to determine the physical properties of the outflow. Methods: Maps from the Submillimeter Array (SMA) reveal the spatial distribution of the gaseous emission towards IRAS 15398-3359. The line radiative transfer code LIME is used to construct a full 3D model of the system taking all relevant components and scales into account. Results: CO, HCO+, and N2H+ are detected and shown to trace the motions of the outflow. For CO, the circumstellar envelope and the surrounding cloud also have a profound impact on the observed line profiles. N2H+ is detected in the outflow, but is suppressed towards the central region, perhaps because of the competing reaction between CO and H3+ in the densest regions as well as the destruction of N2H+ by CO. N2D+ is detected in a ridge south-west of the protostellar condensation and is not associated with the outflow. The morphology and kinematics of the CO emission suggests that the source is younger than ~1000 years. The mass, momentum, momentum rate, mechanical luminosity, kinetic energy, and mass-loss rate are also all estimated to be low. A full 3D radiative transfer model of the system can explain all the kinematical and morphological features in the system.

Bioelectric patterning during oogenesis: stage-specific distribution of membrane potentials, intracellular pH and ion-transport mechanisms in Drosophila ovarian follicles.

PubMed

Krüger, Julia; Bohrmann, Johannes

2015-01-16

Bioelectric phenomena have been found to exert influence on various developmental and regenerative processes. Little is known about their possible functions and the cellular mechanisms by which they might act during Drosophila oogenesis. In developing follicles, characteristic extracellular current patterns and membrane-potential changes in oocyte and nurse cells have been observed that partly depend on the exchange of protons, potassium ions and sodium ions. These bioelectric properties have been supposed to be related to various processes during oogenesis, e. g. pH-regulation, osmoregulation, cell communication, cell migration, cell proliferation, cell death, vitellogenesis and follicle growth. Analysing in detail the spatial distribution and activity of the relevant ion-transport mechanisms is expected to elucidate the roles that bioelectric phenomena play during oogenesis. To obtain an overview of bioelectric patterning along the longitudinal and transversal axes of the developing follicle, the spatial distributions of membrane potentials (Vmem), intracellular pH (pHi) and various membrane-channel proteins were studied systematically using fluorescent indicators, fluorescent inhibitors and antisera. During mid-vitellogenic stages 9 to 10B, characteristic, stage-specific Vmem-patterns in the follicle-cell epithelium as well as anteroposterior pHi-gradients in follicle cells and nurse cells were observed. Corresponding distribution patterns of proton pumps (V-ATPases), voltage-dependent L-type Ca(2+)-channels, amiloride-sensitive Na(+)-channels and Na(+),H(+)-exchangers (NHE) and gap-junction proteins (innexin 3) were detected. In particular, six morphologically distinguishable follicle-cell types are characterized on the bioelectric level by differences concerning Vmem and pHi as well as specific compositions of ion channels and carriers. Striking similarities between Vmem-patterns and activity patterns of voltage-dependent Ca(2+)-channels were found, suggesting a mechanism for transducing bioelectric signals into cellular responses. Moreover, gradients of electrical potential and pH were observed within single cells. Our data suggest that spatial patterning of Vmem, pHi and specific membrane-channel proteins results in bioelectric signals that are supposed to play important roles during oogenesis, e. g. by influencing spatial coordinates, regulating migration processes or modifying the cytoskeletal organization. Characteristic stage-specific changes of bioelectric activity in specialized cell types are correlated with various developmental processes.

Quantification of soil structure based on Minkowski functions

NASA Astrophysics Data System (ADS)

Vogel, H.-J.; Weller, U.; Schlüter, S.

2010-10-01

The structure of soils and other geologic media is a complex three-dimensional object. Most of the physical material properties including mechanical and hydraulic characteristics are immediately linked to the structure given by the pore space and its spatial distribution. It is an old dream and still a formidable challenge to relate structural features of porous media to their functional properties. Using tomographic techniques, soil structure can be directly observed at a range of spatial scales. In this paper we present a scale-invariant concept to quantify complex structures based on a limited set of meaningful morphological functions. They are based on d+1 Minkowski functionals as defined for d-dimensional bodies. These basic quantities are determined as a function of pore size or aggregate size obtained by filter procedures using mathematical morphology. The resulting Minkowski functions provide valuable information on the size of pores and aggregates, the pore surface area and the pore topology having the potential to be linked to physical properties. The theoretical background and the related algorithms are presented and the approach is demonstrated for the pore structure of an arable soil and the pore structure of a sand both obtained by X-ray micro-tomography. We also analyze the fundamental problem of limited resolution which is critical for any attempt to quantify structural features at any scale using samples of different size recorded at different resolutions. The results demonstrate that objects smaller than 5 voxels are critical for quantitative analysis.

Solute transport in streams of varying morphology inferred from a high resolution network of potentiometric wireless chloride sensors

NASA Astrophysics Data System (ADS)

Klaus, Julian; Smettem, Keith; Pfister, Laurent; Harris, Nick

2017-04-01

There is ongoing interest in understanding and quantifying the travel times and dispersion of solutes moving through stream environments, including the hyporheic zone and/or in-channel dead zones where retention affects biogeochemical cycling processes that are critical to stream ecosystem functioning. Modelling these transport and retention processes requires acquisition of tracer data from injection experiments where the concentrations are recorded downstream. Such experiments are often time consuming and costly, which may be the reason many modelling studies of chemical transport have tended to rely on relatively few well documented field case studies. This leads to the need of fast and cheap distributed sensor arrays that respond instantly and record chemical transport at points of interest on timescales of seconds at various locations in the stream environment. To tackle this challenge we present data from several tracer experiments carried out in the Attert river catchment in Luxembourg employing low-cost (in the order of a euro per sensor) potentiometric chloride sensors in a distributed array. We injected NaCl under various baseflow conditions in streams of different morphologies and observed solute transport at various distances and locations. This data is used to benchmark the sensors to data obtained from more expensive electrical conductivity meters. Furthermore, the data allowed spatial resolution of hydrodynamic mixing processes and identification of chemical 'dead zones' in the study reaches.

Analysis of geometric and electrochemical characteristics of lithium cobalt oxide electrode with different packing densities

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lim, Cheolwoong; Yan, Bo; Kang, Huixiao

2016-08-06

In order to investigate geometric and electrochemical characteristics of Li ion battery electrode with different packing densities, lithium cobalt oxide (LiCoO 2) cathode electrodes were fabricated from a 94:3:3 (wt%) mixture of LiCoO 2, polymeric binder, and super-P carbon black and calendered to different densities. A synchrotron X-ray nano-computed tomography system with a spatial resolution of 58.2 nm at the Advanced Photon Source of the Argonne National Laboratory was employed to obtain three dimensional morphology data of the electrodes. The morphology data were then quantitatively analyzed to characterize their geometric properties, such as porosity, tortuosity, specific surface area, and poremore » size distribution. The geometric and electrochemical analysis reveal that high packing density electrodes have smaller average pore size and narrower pore size distribution, which improves the electrical contact between carbon-binder matrix and LiCoO 2 particles. The better contact improves the capacity and rate capability by reducing the possibility of electrically isolated LiCoO 2 particles and increasing the electrochemically active area. The results show that increase of packing density results in higher tortuosity, but electrochemically active area is more crucial to cell performance than tortuosity at up to 3.6 g/cm 3 packing density and 4 C rate.« less

Galactic star formation enhanced and quenched by ram pressure in groups and clusters

NASA Astrophysics Data System (ADS)

Bekki, Kenji

2014-02-01

We investigate how ram pressure of intragroup and intracluster medium can influence the spatial and temporal variations of star formation (SF) of disc galaxies with halo masses (Mh) ranging from 1010 to 1012 M⊙ (i.e. from dwarf irregular to Milky Way-type) in groups and clusters with 1013 ≤ Mh/M⊙ ≤ 1015 by using numerical simulations with a new model for time-varying ram pressure. The long-term evolution of SF rates and Hα morphologies corresponding to the distributions of star-forming regions are particularly investigated for different model parameters. The principal results are as follows. Whether ram pressure can enhance or reduce SF depends on Mh of disc galaxies and inclination angles of gas discs with respect to their orbital directions for a given orbit and a given environment. For example, SF can be moderately enhanced in disc galaxies with Mh = 1012 M⊙ at the pericentre passages in a cluster with Mh = 1014 M⊙ whereas it can be completely shut down (`quenching') for low-mass discs with Mh = 1010 M⊙. Ram pressure can reduce the Hα-to-optical-disc-size ratios of discs and the level of the reduction depends on Mh and orbits of disc galaxies for a given environment. Disc galaxies under strong ram pressure show characteristic Hα morphologies such as ring-like, one-sided and crescent-like distributions.

Property Improvement in CZT via Modeling and Processing Innovations . Te-particles in vertical gradient freeze CZT: Size and Spatial Distributions and Constitutional Supercooling

DOE Office of Scientific and Technical Information (OSTI.GOV)

Henager, Charles H.; Alvine, Kyle J.; Bliss, Mary

2014-10-01

A section of a vertical gradient freeze CZT boule approximately 2100-mm 3 with a planar area of 300-mm 2 was prepared and examined using transmitted IR microscopy at various magnifications to determine the three-dimensional spatial and size distributions of Te-particles over large longitudinal and radial length scales. The boule section was approximately 50-mm wide by 60-mm in length by 7-mm thick and was doubly polished for TIR work. Te-particles were imaged through the thickness using extended focal imaging to locate the particles in thickness planes spaced 15-µm apart and then in plane of the image using xy-coordinates of the particlemore » center of mass so that a true three dimensional particle map was assembled for a 1-mm by 45-mm longitudinal strip and for a 1-mm by 50-mm radial strip. Te-particle density distributions were determined as a function of longitudinal and radial positions in these strips, and treating the particles as vertices of a network created a 3D image of the particle spatial distribution. Te-particles exhibited a multi-modal log-normal size density distribution that indicated a slight preference for increasing size with longitudinal growth time, while showing a pronounced cellular network structure throughout the boule that can be correlated to dislocation network sizes in CZT. Higher magnification images revealed a typical Rayleigh-instability pearl string morphology with large and small satellite droplets. This study includes solidification experiments in small crucibles of 30:70 mixtures of Cd:Te to reduce the melting point below 1273 K (1000°C). These solidification experiments were performed over a wide range of cooling rates and clearly demonstrated a growth instability with Te-particle capture that is suggested to be responsible for one of the peaks in the size distribution using size discrimination visualization. The results are discussed with regard to a manifold Te-particle genesis history as 1) Te-particle direct capture from melt-solid growth instabilities, 2) Te-particle formation from dislocation core diffusion and the formation and breakup of Te-tubes, and 3) Te-particle formation due to classical nucleation and growth as precipitates.« less

Ice under cover: Using bulk spatial and physical properties of probable ground ice driven mass wasting features on Ceres to better understand its surface

NASA Astrophysics Data System (ADS)

Hughson, K.; Russell, C.; Schmidt, B. E.; Chilton, H.; Scully, J. E. C.; Castillo, J. C.; Combe, J. P.; Ammannito, E.; Sizemore, H.; Platz, T.; Byrne, S.; Nathues, A.; Raymond, C. A.

2016-12-01

NASA's Dawn spacecraft arrived at Ceres on March 6, 2015, and has been studying the dwarf planet through a series of successively lower orbits, obtaining morphological and topographical image, mineralogical, elemental composition, and gravity data (Russell et al., 2016). Images taken by Dawn's Framing Camera show a multitude of flow features that were broadly interpreted as ground ice related structures either similar to ice cored/ice cemented flows (as seen on Earth and Mars), long run-out landslides, or fluidized ejecta (as seen on Mars) by Schmidt et al. (2016a and 2016b) and Buczkowski et al. (2016). The aforementioned ice cored/ice cemented-like flows are present only at high latitudes. Results from Dawn's Gamma Ray and Neutron Detector (GRaND) indicate a shallow ice table on Ceres above 45-50°N/S, which supports the interpretation that these flows are ice-rich (Prettyman et al., 2016). A near coincident spectral detection of H2O ice with one of these ice cored/ice cemented-like flows in Oxo crater by Dawn's Visual and Infrared spectrometer (VIR) further bolsters this claim (Combe et al., 2016). We use aggregate spatial and physical properties of these ice attributed cerean flows, such as flow orientation, inclination, preference for north or south facing slopes, drop height to run-out length ratio, geographical location, and areal number density to better understand the rheology and distribution of ground ice in Ceres' uppermost layer. By combining these data with local spectroscopic, global elemental abundance, experimentally derived physical properties of cerean analogue material, and other morphological information (such as the morphologies of flow hosting craters) we intend to further test the ground ice hypothesis for the formation of these flows and constrain the global distribution of near surface ground ice on Ceres to a higher fidelity than what would be possible using GRaND and VIR observations alone. References: Buczkowski et al., (2016) Science, AcceptedCombe, J-P., et al. (2016) Science, AcceptedPrettyman, T. H., et al. (2016) LPSC XVII, Abstract #2228 Russell, et al. (2016) Science, AcceptedSchmidt, B. E., et al. (2016a) LPSC XVII, Abstract #2677 Schmidt, B. E., et al. (2016b), Nature Geoscience, In Review

Yalongjiang River Has Had an Important Role in the Dispersal and Divergence of Rosa soulieana in the Hengduan Mountains of China.

PubMed

Jian, Hongying; Zhang, Yonghong; Qiu, Xianqin; Yan, Huijun; Wang, Qigang; Zhang, Hao; Sun, Hang

2016-01-01

The Hengduan Mountains are the core of the Sino-Himalayan Floristic Region. Rosa soulieana Crép. is an important wild rose species that is widely distributed in the Hengduan Mountains. To provide better future utilization of this wild rose, and also to add some possible proof of the effect of geomorphological and ecological characteristics of the Hengduan Mountains on the current spatial distribution and genetic diversity of local species, the genetic diversity and genetic structure of 556 individuals from 37 populations of R. soulieana were studied using fluorescent amplified fragment length polymorphisms (AFLPs). R. soulieana showed a moderately high level of genetic diversity and a high level of genetic differentiation at the species level. The total percentage of polymorphic loci, total heterozygosity (Ht), Shannon index (I), and heterozygosity value within populations (Hs) were 97.8%, 0.253, 0.339, and 0.139, respectively. More than half of the total genetic variation (54.0%) occurred within populations, and the overall gene differentiation coefficient (Gst) was 0.451. The genetic differentiation among populations was positively and significantly correlated with geographic distance. The neighbor-joining cluster and the Bayesian analysis divided all the populations and individuals into 3 groups, and did not support the morphology based intraspecific varieties. The results confirmed that the ancient R. soulieana of the third group survived in northwestern Yunnan and Yalongjiang valley and then moved upnorth along the valley. The spatial distribution of the other two groups was the result of allopatric divergence due to long period of adaptation to the different climatic conditions of its distribution at either side of the Yalongjiang River.

Discrete Element Method Modeling of Bedload Transport: Towards a physics-based link between bed surface variability and particle entrainment statistics

NASA Astrophysics Data System (ADS)

Ghasemi, A.; Borhani, S.; Viparelli, E.; Hill, K. M.

2017-12-01

The Exner equation provides a formal mathematical link between sediment transport and bed morphology. It is typically represented in a discrete formulation where there is a sharp geometric interface between the bedload layer and the bed, below which no particles are entrained. For high temporally and spatially resolved models, this is strictly correct, but typically this is applied in such a way that spatial and temporal fluctuations in the bed surface (bedforms and otherwise) are not captured. This limits the extent to which the exchange between particles in transport and the sediment bed are properly represented, particularly problematic for mixed grain size distributions that exhibit segregation. Nearly two decades ago, Parker (2000) provided a framework for a solution to this dilemma in the form of a probabilistic Exner equation, partially experimentally validated by Wong et al. (2007). We present a computational study designed to develop a physics-based framework for understanding the interplay between physical parameters of the bed and flow and parameters in the Parker (2000) probabilistic formulation. To do so we use Discrete Element Method simulations to relate local time-varying parameters to long-term macroscopic parameters. These include relating local grain size distribution and particle entrainment and deposition rates to long- average bed shear stress and the standard deviation of bed height variations. While relatively simple, these simulations reproduce long-accepted empirically determined transport behaviors such as the Meyer-Peter and Muller (1948) relationship. We also find that these simulations reproduce statistical relationships proposed by Wong et al. (2007) such as a Gaussian distribution of bed heights whose standard deviation increases with increasing bed shear stress. We demonstrate how the ensuing probabilistic formulations provide insight into the transport and deposition of both narrow and wide grain size distribution.

Modelling rate distributions using character compatibility: implications for morphological evolution among fossil invertebrates

PubMed Central

Wagner, Peter J.

2012-01-01

Rate distributions are important considerations when testing hypotheses about morphological evolution or phylogeny. They also have implications about general processes underlying character evolution. Molecular systematists often assume that rates are Poisson processes with gamma distributions. However, morphological change is the product of multiple probabilistic processes and should theoretically be affected by hierarchical integration of characters. Both factors predict lognormal rate distributions. Here, a simple inverse modelling approach assesses the best single-rate, gamma and lognormal models given observed character compatibility for 115 invertebrate groups. Tests reject the single-rate model for nearly all cases. Moreover, the lognormal outperforms the gamma for character change rates and (especially) state derivation rates. The latter in particular is consistent with integration affecting morphological character evolution. PMID:21795266

Retinal ganglion cell topography and spatial resolving power in penguins.

PubMed

Coimbra, João Paulo; Nolan, Paul M; Collin, Shaun P; Hart, Nathan S

2012-01-01

Penguins are a group of flightless seabirds that exhibit numerous morphological, behavioral and ecological adaptations to their amphibious lifestyle, but little is known about the topographic organization of neurons in their retinas. In this study, we used retinal wholemounts and stereological methods to estimate the total number and topographic distribution of retinal ganglion cells in addition to an anatomical estimate of spatial resolving power in two species of penguins: the little penguin, Eudyptula minor, and the king penguin, Aptenodytes patagonicus. The total number of ganglion cells per retina was approximately 1,200,000 in the little penguin and 1,110,000 in the king penguin. The topographic distribution of retinal ganglion cells in both species revealed the presence of a prominent horizontal visual streak with steeper gradients in the little penguin. The little penguin retinas showed ganglion cell density peaks of 21,867 cells/mm², affording spatial resolution in water of 17.07-17.46 cycles/degree (12.81-13.09 cycles/degree in air). In contrast, the king penguin showed a relatively lower peak density of ganglion cells of 14,222 cells/mm², but--due to its larger eye--slightly higher spatial resolution in water of 20.40 cycles/degree (15.30 cycles/degree in air). In addition, we mapped the distribution of giant ganglion cells in both penguin species using Nissl-stained wholemounts. In both species, topographic mapping of this cell type revealed the presence of an area gigantocellularis with a concentric organization of isodensity contours showing a peak in the far temporal retina of approximately 70 cells/mm² in the little penguin and 39 cells/mm² in the king penguin. Giant ganglion cell densities gradually fall towards the outermost isodensity contours revealing the presence of a vertically organized streak. In the little penguin, we confirmed our cytological characterization of giant ganglion cells using immunohistochemistry for microtubule-associated protein 2. This suite of retinal specializations, which is also observed in the closely related procellariiform seabirds, affords the eyes of the little and king penguins panoramic surveillance of the horizon and motion detection in the frontal visual field. Copyright © 2012 S. Karger AG, Basel.

A dental perspective on the taxonomic affinity of the Balanica mandible (BH-1).

PubMed

Skinner, Matthew M; de Vries, Dorien; Gunz, Philipp; Kupczik, Kornelius; Klassen, R Paul; Hublin, Jean-Jacques; Roksandic, Mirjana

2016-04-01

The Middle Pleistocene represents a period of critical importance in human evolution, marked by encephalisation and dental reduction, and increasing diversification of temporally and spatially distributed hominin lineages in Africa, Asia and Europe. New specimens, especially from areas less well represented in the fossil record, can inform the debate on morphological changes to the skeleton and teeth and the phylogenetic course of human evolution during this period. The mandible from the cave of Mala Balanica, Serbia has recently been re-dated to at least 400 ka, and its well-preserved dentition presents an excellent opportunity to characterize molar crown morphology at this time period, and re-examine claims for a lack of Neandertal affinities in the specimen. In this study we employ microtomography to image the internal structure of the mandibular molars (focusing on the morphology of the enamel-dentine junction, or EDJ) of the BH-1 specimen and a comparative sample (n = 141) of Homo erectus sensu lato, Homo neanderthalensis, Pleistocene Homo sapiens, and recent H. sapiens. We quantitatively assess EDJ morphology using 3D geometric morphometrics and examine the expression of discrete dental traits at the dentine surface. We also compare third molar enamel thickness in BH-1 to those of H. neanderthalensis and both Pleistocene and recent H. sapiens, and document previously unreported morphology of the BH-1 premolar and molar roots. Our results highlight the reliability of the EDJ surface for classifying hominin taxa, indicate a primitive dental morphology for BH-1 molars, and confirm a general lack of derived Neandertal features for the Balanica individual. The plesiomorphic character of BH-1 is consistent with several competing models of Middle Pleistocene hominin evolution and provides an important regional and temporal example for reconstructing morphological changes in the mandible and teeth during this time period. Copyright © 2016 Elsevier Ltd. All rights reserved.

A dynamic monitoring approach for the surface morphology evolution measurement of plasma facing components by means of speckle interferometry

NASA Astrophysics Data System (ADS)

Wang, Hongbei; Cui, Xiaoqian; Feng, Chunlei; Li, Yuanbo; Zhao, Mengge; Luo, Guangnan; Ding, Hongbin

2017-11-01

Plasma Facing Components (PFCs) in a magnetically confined fusion plasma device will be exposed to high heat load and particle fluxes, and it would cause PFCs' surface morphology to change due to material erosion and redeposition from plasma wall interactions. The state of PFCs' surface condition will seriously affect the performance of long-pulse or steady state plasma discharge in a tokamak; it will even constitute an enormous threat to the operation and the safety of fusion plasma devices. The PFCs' surface morphology evolution measurement could provide important information about PFCs' real-time status or damage situation and it would help to a better understanding of the plasma wall interaction process and mechanism. Meanwhile through monitoring the distribution of dust deposition in a tokamak and providing an upper limit on the amount of loose dust, the PFCs' surface morphology measurement could indirectly contribute to keep fusion operational limits and fusion device safety. Aiming at in situ dynamic monitoring PFCs' surface morphology evolution, a laboratory experimental platform DUT-SIEP (Dalian University of Technology-speckle interferometry experimental platform) based on the speckle interferometry technique has been constructed at Dalian University of Technology (DUT) in China. With directional specific designing and focusing on the real detection condition of EAST (Experimental Advanced Superconducting Tokamak), the DUT-SIEP could realize a variable measurement range, widely increased from 0.1 μm to 300 μm, with high spatial resolution (<1 mm) and ultra-high time resolution (<2 s for EAST measuring conditions). Three main components of the DUT-SIEP are all integrated and synchronized by a time schedule control and data acquisition terminal and coupled with a three-dimensional phase unwrapping algorithm, the surface morphology information of target samples can be obtained and reconstructed in real-time. A local surface morphology of the real divertor tiles adopted from EAST has been measured, and the feasibility and reliability of this new experimental platform have been demonstrated.

Juvenile Taiep rats have shorter dendritic trees in the dorsal field of the hippocampus without spatial learning disabilities.

PubMed

Silva-Gómez, Adriana B; Bravo-Duran, Dolores A; Eguibar, Jose R; Cortes, Carmen

2018-06-01

Myelin mutant taiep rats show a progressive demyelination in the central nervous system due to an abnormal accumulation of microtubules in the cytoplasm and the processes on their oligodendrocytes. Demyelination is associated with electrophysiological alterations and the mutant had a progressive astrocytosis. The illness is associated with change in cytokine levels and in the expression of different nitric oxide synthase and concomitantly lipoperoxidation in several areas of the brain. However, until now there has been no detailed anatomical analysis of neurons in this mutant. The aim of this study was to analyze the dendritic morphology in the hippocampus using Golgi-Cox staining and spatial memory through Morris water maze test in young adult (3 months old) taiep rats and compare them with normal Sprague-Dawley. Our results showed that taiep rats have altered dendritic tree morphology in pyramidal neurons in the CA1 field of the hippocampus, but not in the CA3 region. These morphological changes did not produce a concomitant deficit in spatial memory acquisition or recall at this early stage of the disease. Our results suggest that impairment of dendritic morphology in the CA1 field of the hippocampus is a landmark of the pathology of this progressive multiple sclerosis model. © 2018 Wiley Periodicals, Inc.

Distribution of late gadolinium enhancement in various types of cardiomyopathies: Significance in differential diagnosis, clinical features and prognosis

PubMed Central

Satoh, Hiroshi; Sano, Makoto; Suwa, Kenichiro; Saitoh, Takeji; Nobuhara, Mamoru; Saotome, Masao; Urushida, Tsuyoshi; Katoh, Hideki; Hayashi, Hideharu

2014-01-01

The recent development of cardiac magnetic resonance (CMR) techniques has allowed detailed analyses of cardiac function and tissue characterization with high spatial resolution. We review characteristic CMR features in ischemic and non-ischemic cardiomyopathies (ICM and NICM), especially in terms of the location and distribution of late gadolinium enhancement (LGE). CMR in ICM shows segmental wall motion abnormalities or wall thinning in a particular coronary arterial territory, and the subendocardial or transmural LGE. LGE in NICM generally does not correspond to any particular coronary artery distribution and is located mostly in the mid-wall to subepicardial layer. The analysis of LGE distribution is valuable to differentiate NICM with diffusely impaired systolic function, including dilated cardiomyopathy, end-stage hypertrophic cardiomyopathy (HCM), cardiac sarcoidosis, and myocarditis, and those with diffuse left ventricular (LV) hypertrophy including HCM, cardiac amyloidosis and Anderson-Fabry disease. A transient low signal intensity LGE in regions of severe LV dysfunction is a particular feature of stress cardiomyopathy. In arrhythmogenic right ventricular cardiomyopathy/dysplasia, an enhancement of right ventricular (RV) wall with functional and morphological changes of RV becomes apparent. Finally, the analyses of LGE distribution have potentials to predict cardiac outcomes and response to treatments. PMID:25068019

Sediment transport dynamics linked to morphological evolution of the Selenga River delta, Lake Baikal, Russia

NASA Astrophysics Data System (ADS)

Dong, T. Y.; Nittrouer, J.; McElroy, B. J.; Czapiga, M. J.; Il'icheva, E.; Pavolv, M.; Parker, G.

2014-12-01

The Selenga River delta, Lake Baikal, Russia, is approximately 700 km2 in size and contains three active lobes that receive varying amounts of water and sediment discharge. This delta represents a unique end-member in so far that the system is positioned along the deep-water (~1500 m) margin of Lake Baikal and therefore exists as a shelf-edge delta. In order to evaluate the morphological dynamics of the Selenga delta, field expeditions were undertaken during July 2013 and 2014, to investigate the morphologic, sedimentologic, and hydraulic nature of this delta system. Single-beam bathymetry data, sidescan sonar data, sediment samples, and aerial survey data were collected and analyzed to constrain: 1) channel geometries within the delta, 2) bedform sizes and spatial distributions, 3) grain size composition of channel bed sediment as well as bank sediment, collected from both major and minor distributary channels, and 4) elevation range of the subaerial portion of the delta. Our data indicate that the delta possesses downstream sediment fining, ranging from predominantly gravel and sand near the delta apex to silt and sand at the delta-lake interface. Field surveys also indicate that the Selenga delta has both eroding and aggrading banks, and that the delta is actively incising into some banks that consist of terraces, which are defined as regions that are not inundated by typical 2- to 4-year flood discharge events. Therefore the terraces are distinct from the actively accreting regions of the delta that receive sedimentation via water inundation during regular river floods. We spatially constrain the regions of the Selenga delta that are inundated during floods versus terraced using a 1-D water-surface hydrodynamic model that produces estimates of stage for flood water discharges, whereby local water surface elevations produced with the model are compared to the measured terrestrial elevations. Our analyses show that terrace elevations steadily decrease downstream for all lobes, and that the delta is undergoing an active phase of erosion, characterized by channel incision and extensive lateral erosion of terraces; this process of delta 'self-cannibalization' contributes to the downstream sediment flux and morphological evolution of the delta.

Multi-wavelength Study of the Supernova Remnant Kes 79 (G33.6+0.1): On Its Supernova Properties and Expansion into a Molecular Environment

NASA Astrophysics Data System (ADS)

Zhou, Ping; Chen, Yang; Safi-Harb, Samar; Zhou, Xin; Sun, Ming; Zhang, Zhi-Yu; Zhang, Gao-Yuan

2016-11-01

Kes 79 (G33.6+0.1) is an aspherical thermal composite supernova remnant (SNR) observed across the electromagnetic spectrum and showing an unusual highly structured morphology, in addition to harboring a central compact object (CCO). Using the CO J = 1-0, J = 2-1, and J = 3-2 data, we provide the first direct evidence and new morphological evidence to support the physical interaction between the SNR and the molecular cloud in the local standard of rest velocity ˜ 105 {km} {{{s}}}-1. We revisit the 380 ks XMM-Newton observations and perform a dedicated spatially resolved X-ray spectroscopic study with careful background subtraction. The overall X-ray-emitting gas is characterized by an under-ionized ({τ }{{c}}˜ 6× {10}11 {{cm}}-3) cool ({{kT}}{{c}}≈ 0.20 keV) plasma with solar abundances, plus an under-ionized ({τ }{{h}}˜ 8× {10}10 {{cm}}-3) hot ({{kT}}{{h}}≈ 0.80 keV) plasma with elevated Ne, Mg, Si, S, and Ar abundances. The X-ray filaments, spatially correlated with the 24 μ {{m}} IR filaments, are suggested to be due to the SNR shock interaction with dense gas, while the halo forms from SNR breaking out into a tenuous medium. Kes 79 appears to have a double-hemisphere morphology viewed along the symmetric axis. Projection effect can explain the multiple-shell structures and the thermal composite morphology. The high-velocity, hot ({{kT}}{{h}}˜ 1.4{--}1.6 keV) ejecta patch with high metal abundances, together with the non-uniform metal distribution across the SNR, indicate an asymmetric SN explosion of Kes 79. We refine the Sedov age to 4.4-6.7 kyr and the mean shock velocity to 730 {km} {{{s}}}-1. Our multi-wavelength study suggests a progenitor mass of ˜15-20 solar masses for the core-collapse explosion that formed Kes 79 and its CCO, PSR J1852+0040.

Forebrain CRHR1 deficiency attenuates chronic stress-induced cognitive deficits and dendritic remodeling

PubMed Central

Wang, Xiao-Dong; Chen, Yuncai; Wolf, Miriam; Wagner, Klaus V.; Liebl, Claudia; Scharf, Sebastian H.; Harbich, Daniela; Mayer, Bianca; Wurst, Wolfgang; Holsboer, Florian; Deussing, Jan M.; Baram, Tallie Z.; Müller, Marianne B.; Schmidt, Mathias V.

2011-01-01

Chronic stress evokes profound structural and molecular changes in the hippocampus, which may underlie spatial memory deficits. Corticotropin-releasing hormone (CRH) and CRH receptor 1 (CRHR1) mediate some of the rapid effects of stress on dendritic spine morphology and modulate learning and memory, thus providing a potential molecular basis for impaired synaptic plasticity and spatial memory by repeated stress exposure. Using adult male mice with CRHR1 conditionally inactivated in the forebrain regions, we investigated the role of CRH-CRHR1 signaling in the effects of chronic social defeat stress on spatial memory, the dendritic morphology of hippocampal CA3 pyramidal neurons, and the hippocampal expression of nectin-3, a synaptic cell adhesion molecule important in synaptic remodeling. In chronically stressed wild-type mice, spatial memory was disrupted, and the complexity of apical dendrites of CA3 neurons reduced. In contrast, stressed mice with forebrain CRHR1 deficiency exhibited normal dendritic morphology of CA3 neurons and mild impairments in spatial memory. Additionally, we showed that the expression of nectin-3 in the CA3 area was regulated by chronic stress in a CRHR1-dependent fashion and associated with spatial memory and dendritic complexity. Moreover, forebrain CRHR1 deficiency prevented the down-regulation of hippocampal glucocorticoid receptor expression by chronic stress but induced increased body weight gain during persistent stress exposure. These findings underscore the important role of forebrain CRH-CRHR1 signaling in modulating chronic stress-induced cognitive, structural and molecular adaptations, with implications for stress-related psychiatric disorders. PMID:21296667

Characterizing the Morphology, Distribution, and Formation Geometry of Mercury's Pyroclastic Vents

NASA Astrophysics Data System (ADS)

Jozwiak, L. M.; Head, J. W.; Wilson, L.

2018-05-01

We present a final catalog of pyroclastic vents on Mercury, identifying 104 candidate pyroclastic vents. We then assess the vent distribution, morphologic variation, and probable formation geometries.

The Potential for Spatial Distribution Indices to Signal Thresholds in Marine Fish Biomass

PubMed Central

Reuchlin-Hugenholtz, Emilie

2015-01-01

The frequently observed positive relationship between fish population abundance and spatial distribution suggests that changes in distribution can be indicative of trends in abundance. If contractions in spatial distribution precede declines in spawning stock biomass (SSB), spatial distribution reference points could complement the SSB reference points that are commonly used in marine conservation biology and fisheries management. When relevant spatial distribution information is integrated into fisheries management and recovery plans, risks and uncertainties associated with a plan based solely on the SSB criterion would be reduced. To assess the added value of spatial distribution data, we examine the relationship between SSB and four metrics of spatial distribution intended to reflect changes in population range, concentration, and density for 10 demersal populations (9 species) inhabiting the Scotian Shelf, Northwest Atlantic. Our primary purpose is to assess their potential to serve as indices of SSB, using fisheries independent survey data. We find that metrics of density offer the best correlate of spawner biomass. A decline in the frequency of encountering high density areas is associated with, and in a few cases preceded by, rapid declines in SSB in 6 of 10 populations. Density-based indices have considerable potential to serve both as an indicator of SSB and as spatially based reference points in fisheries management. PMID:25789624

Design and implementation of a distributed large-scale spatial database system based on J2EE

NASA Astrophysics Data System (ADS)

Gong, Jianya; Chen, Nengcheng; Zhu, Xinyan; Zhang, Xia

2003-03-01

With the increasing maturity of distributed object technology, CORBA, .NET and EJB are universally used in traditional IT field. However, theories and practices of distributed spatial database need farther improvement in virtue of contradictions between large scale spatial data and limited network bandwidth or between transitory session and long transaction processing. Differences and trends among of CORBA, .NET and EJB are discussed in details, afterwards the concept, architecture and characteristic of distributed large-scale seamless spatial database system based on J2EE is provided, which contains GIS client application, web server, GIS application server and spatial data server. Moreover the design and implementation of components of GIS client application based on JavaBeans, the GIS engine based on servlet, the GIS Application server based on GIS enterprise JavaBeans(contains session bean and entity bean) are explained.Besides, the experiments of relation of spatial data and response time under different conditions are conducted, which proves that distributed spatial database system based on J2EE can be used to manage, distribute and share large scale spatial data on Internet. Lastly, a distributed large-scale seamless image database based on Internet is presented.

Effects of Distributed Practice on the Proceduralization of Morphology

ERIC Educational Resources Information Center

Suzuki, Yuichi; DeKeyser, Robert

2017-01-01

The present study aimed to examine whether distributed practice works better than massed practice for proceduralization of grammatical knowledge. Learners of Japanese as a second language were trained on an element of Japanese morphology under either massed or distributed practice conditions. Results showed that massed practice led to accurate…

Sonic morphology: Aesthetic dimensional auditory spatial awareness

NASA Astrophysics Data System (ADS)

Whitehouse, Martha M.

The sound and ceramic sculpture installation, " Skirting the Edge: Experiences in Sound & Form," is an integration of art and science demonstrating the concept of sonic morphology. "Sonic morphology" is herein defined as aesthetic three-dimensional auditory spatial awareness. The exhibition explicates my empirical phenomenal observations that sound has a three-dimensional form. Composed of ceramic sculptures that allude to different social and physical situations, coupled with sound compositions that enhance and create a three-dimensional auditory and visual aesthetic experience (see accompanying DVD), the exhibition supports the research question, "What is the relationship between sound and form?" Precisely how people aurally experience three-dimensional space involves an integration of spatial properties, auditory perception, individual history, and cultural mores. People also utilize environmental sound events as a guide in social situations and in remembering their personal history, as well as a guide in moving through space. Aesthetically, sound affects the fascination, meaning, and attention one has within a particular space. Sonic morphology brings art forms such as a movie, video, sound composition, and musical performance into the cognitive scope by generating meaning from the link between the visual and auditory senses. This research examined sonic morphology as an extension of musique concrete, sound as object, originating in Pierre Schaeffer's work in the 1940s. Pointing, as John Cage did, to the corporeal three-dimensional experience of "all sound," I composed works that took their total form only through the perceiver-participant's participation in the exhibition. While contemporary artist Alvin Lucier creates artworks that draw attention to making sound visible, "Skirting the Edge" engages the perceiver-participant visually and aurally, leading to recognition of sonic morphology.

Visuospatial learning and memory in the Cebus apella and microglial morphology in the molecular layer of the dentate gyrus and CA1 lacunosum molecular layer.

PubMed

Santos-Filho, Carlos; de Lima, Camila M; Fôro, César A R; de Oliveira, Marcus A; Magalhães, Nara G M; Guerreiro-Diniz, Cristovam; Diniz, Daniel G; Vasconcelos, Pedro F da C; Diniz, Cristovam W P

2014-11-01

We investigated whether the morphology of microglia in the molecular layer of the dentate gyrus (DG-Mol) or in the lacunosum molecular layer of CA1 (CA1-LMol) was correlated with spatial learning and memory in the capuchin monkey (Cebus apella). Learning and memory was tested in 4 monkeys with visuo-spatial, paired associated learning (PAL) tasks from the Cambridge battery of neuropsychological tests. After testing, monkeys were sacrificed, and hippocampi were sectioned. We specifically immunolabeled microglia with an antibody against the adapter binding, ionized calcium protein. Microglia were selected from the middle and outer thirds of the DG-Mol (n=268) and the CA1-LMol (n=185) for three-dimensional reconstructions created with Neurolucida and Neuroexplorer software. Cluster and discriminant analyses, based on microglial morphometric parameters, identified two major morphological microglia phenotypes (types I and II) found in both the CA1-LMol and DG-Mol of all individuals. Compared to type II, type I microglia were significantly smaller, thinner, more tortuous and ramified, and less complex (lower fractal dimensions). PAL performance was both linearly and non-linearly correlated with type I microglial morphological features from the rostral and caudal DG-Mol, but not with microglia from the CA1-LMol. These differences in microglial morphology and correlations with PAL performance were consistent with previous proposals of hippocampal regional contributions for spatial learning and memory. Our results suggested that at least two morphological microglial phenotypes provided distinct physiological roles to learning-associated activity in the rostral and caudal DG-Mol of the monkey brain. Copyright © 2014 Elsevier B.V. All rights reserved.

Adhesion and formation of microbial biofilms in complex microfluidic devices

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kumar, Aloke; Karig, David K; Neethirajan, Suresh

2012-01-01

Shewanella oneidensis is a metal reducing bacterium, which is of interest for bioremediation and clean energy applications. S. oneidensis biofilms play a critical role in several situations such as in microbial energy harvesting devices. Here, we use a microfluidic device to quantify the effects of hydrodynamics on the biofilm morphology of S. oneidensis. For different rates of fluid flow through a complex microfluidic device, we studied the spatiotemporal dynamics of biofilms, and we quantified several morphological features such as spatial distribution, cluster formation and surface coverage. We found that hydrodynamics resulted in significant differences in biofilm dynamics. The baffles inmore » the device created regions of low and high flow in the same device. At higher flow rates, a nonuniform biofilm develops, due to unequal advection in different regions of the microchannel. However, at lower flow rates, a more uniform biofilm evolved. This depicts competition between adhesion events, growth and fluid advection. Atomic force microscopy (AFM) revealed that higher production of extra-cellular polymeric substances (EPS) occurred at higher flow velocities.« less

Marine geophysical data collected in a shallow back-barrier estuary, Barnegat Bay, New Jersey

USGS Publications Warehouse

Andrews, Brian D.; Miselis, Jennifer L.; Danforth, William W.; Irwin, Barry J.; Worley, Charles R.; Bergeron, Emile M.; Blackwood, Dann S.

2015-06-26

In 2011, the U.S. Geological Survey, in cooperation with the New Jersey Department of Environmental Protection, began a multidisciplinary research project to better understand the water quality in Barnegat Bay, New Jersey. This back-barrier estuary is experiencing degraded water quality, algal blooms, loss of seagrass, and increases in oxygen stress, macroalgae, stinging nettles, and brown tide. The spatial scale of the estuary and the scope of challenges within it necessitate a multidisciplinary approach that includes establishing the regional geology and the estuary’s physical characteristics and modeling how the estuary’s morphology interacts to affect its water quality. This report presents the data collected during this project for use in understanding the morphology and the distribution of sea-floor and sub-sea-floor sediments within Barnegat Bay, describes the methods used to collect and process those data, and includes links to the final processed datasets. These data can be used by scientists to understand the links between geomorphology, geologic framework, sediment transport, and estuarine water quality and circulation.

Influence of Substrate Bonding and Surface Morphology on Dynamic Organic Layer Growth: Perylenetetracarboxylic Dianhydride on Au(111).

PubMed

Schmidt, Thomas; Marchetto, Helder; Groh, Ullrich; Fink, Rainer H; Freund, Hans-Joachim; Umbach, Eberhard

2018-05-15

We investigated the dynamics of the initial growth of the first epitaxial layers of perylenetetracarboxylic dianhydride (PTCDA) on the Au(111) surface with high lateral resolution using the aberration-corrected spectro-microscope SMART. With this instrument, we could simultaneously study the different adsorption behaviors and layer growth on various surface areas consisting of either a distribution of flat (111) terraces, separated by single atomic steps ("ideal surface"), or on areas with a high density of step bunches and defects ("realistic surface"). The combined use of photoemission electron microscopy, low-energy electron microscopy, and μ-spot X-ray absorption provided a wealth of new information, showing that the growth of the archetype molecule PTCDA not only has similarities but also has significant differences when comparing Au(111) and Ag(111) substrate surfaces. For instance, under otherwise identical preparation conditions, we observed different growth mechanisms on different surface regions, depending on the density of step bunches. In addition, we studied the spatially resolved desorption behavior which also depends on the substrate morphology.

Effect of surface morphology on drag and roughness sublayer in flows over regular roughness elements

NASA Astrophysics Data System (ADS)

Placidi, Marco; Ganapathisubramani, Bharathram

2014-11-01

The effects of systematically varied roughness morphology on bulk drag and on the spatial structure of turbulent boundary layers are examined by performing a series of wind tunnel experiments. In this study, rough surfaces consisting of regularly and uniformly distributed LEGO™ bricks are employed. Twelve different patterns are adopted in order to methodically examine the individual effects of frontal solidity (λF, frontal area of the roughness elements per unit wall-parallel area) and plan solidity (λP, plan area of roughness elements per unit wall-parallel area), on both the bulk drag and the turbulence structure. A floating element friction balance based on Krogstad & Efros (2010) was designed and manufactured to measure the drag generated by the different surfaces. In parallel, high resolution planar and stereoscopic Particle Image Velocimetry (PIV) was applied to investigate the flow features. This talk will focus on the effects of each solidity parameter on the bulk drag and attempt to relate the observed trends to the flow structures in the roughness sublayer. Currently at City University London.

Comparison of eye morphology and retinal topography in two species of New World vultures (Aves: Cathartidae).

PubMed

Lisney, Thomas J; Stecyk, Karyn; Kolominsky, Jeffrey; Graves, Gary R; Wylie, Douglas R; Iwaniuk, Andrew N

2013-12-01

Vultures are highly reliant on their sensory systems for the rapid detection and localization of carrion before other scavengers can exploit the resource. In this study, we compared eye morphology and retinal topography in two species of New World vultures (Cathartidae), turkey vultures (Cathartes aura), with a highly developed olfactory sense, and black vultures (Coragyps atratus), with a less developed sense of olfaction. We found that eye size relative to body mass was the same in both species, but that black vultures have larger corneas relative to eye size than turkey vultures. However, the overall retinal topography, the total number of cells in the retinal ganglion cell layer, peak and average cell densities, cell soma area frequency distributions, and the theoretical peak anatomical spatial resolving power were the same in both species. This suggests that the visual systems of these two species are similar and that vision plays an equally important role in the biology of both species, despite the apparently greater reliance on olfaction for finding carrion in turkey vultures. Copyright © 2013 Wiley Periodicals, Inc.

Anti-impulse-noise Edge Detection via Anisotropic Morphological Directional Derivatives.

PubMed

Shui, Peng-Lang; Wang, Fu-Ping

2017-07-13

Traditional differential-based edge detection suffers from abrupt degradation in performance when images are corrupted by impulse noises. The morphological operators such as the median filters and weighted median filters possess the intrinsic ability to counteract impulse noise. In this paper, by combining the biwindow configuration with weighted median filters, anisotropic morphological directional derivatives (AMDD) robust to impulse noise are proposed to measure the local grayscale variation around a pixel. For ideal step edges, the AMDD spatial response and directional representation are derived. The characteristics and edge resolution of two kinds of typical biwindows are analyzed thoroughly. In terms of the AMDD spatial response and directional representation of ideal step edges, the spatial matched filter is used to extract the edge strength map (ESM) from the AMDDs of an image. The spatial and directional matched filters are used to extract the edge direction map (EDM). Embedding the extracted ESM and EDM into the standard route of the differential-based edge detection, an anti-impulse-noise AMDD-based edge detector is constructed. It is compared with the existing state-of-the-art detectors on a recognized image dataset for edge detection evaluation. The results show that it attains competitive performance in noise-free and Gaussian noise cases and the best performance in impulse noise cases.

Analysis of skin tissues spatial fluorescence distribution by the Monte Carlo simulation

NASA Astrophysics Data System (ADS)

Y Churmakov, D.; Meglinski, I. V.; Piletsky, S. A.; Greenhalgh, D. A.

2003-07-01

A novel Monte Carlo technique of simulation of spatial fluorescence distribution within the human skin is presented. The computational model of skin takes into account the spatial distribution of fluorophores, which would arise due to the structure of collagen fibres, compared to the epidermis and stratum corneum where the distribution of fluorophores is assumed to be homogeneous. The results of simulation suggest that distribution of auto-fluorescence is significantly suppressed in the near-infrared spectral region, whereas the spatial distribution of fluorescence sources within a sensor layer embedded in the epidermis is localized at an `effective' depth.

Probing the Dynamics of Biomineralization at the Pore Scale Using X-ray Computed Tomography

NASA Astrophysics Data System (ADS)

Armstrong, R. T.; Ajo Franklin, J. B.

2009-12-01

Biomineralization is a natural subsurface process that upon stimulation can dramatically affect soil mechanics and hydraulics. This work presents the results of a study where synchrotron based X-Ray Computed Microtomography (CMT) is used to investigate temporal cementation dynamics and the spatial distribution of biogenic CaCO3 at the pore-scale, thus, shedding light on pore clogging and contact cementation. To facilitate these studies we have developed a family of flow-through bioreactors (ID 8 mm) which can be scanned continuously during precipitation experiments. The reactor is also equipped with differential pressure transducers to allow measurement of sample permeability. Porosity permeability correlations, cementation morphology, CaCO3 spatial distribution, and bulk cementation are addressed herein. Sporosarcina pasteurii (formally Bacillus pasteurii), our model organism, is a prevalent aerobic, motile, soil microbe with a very active urease enzyme. Hydrolysis of urea by the urease enzyme generates carbonate ions, ammonium and an increase in pH which favors carbonate precipitation if appropriate metal cations (e.g. Ca2+) are available. Brightfield microscope results show that precipitation occurs within close proximity of the cell membrane reducing microbial motility and forming a CaCO3 precipitate with a "fluffy" appearance. Besides providing an aqueous environment favorable for mineralization S. pasteurii also provides nucleation sites on its cell membrane. Since this microbe is very effective at inducing carbonate precipitation over a relativity short time span (2-3 days), it was used exclusively in our experiments. Prior to CMT imaging the feasibility of temporal imaging was investigated. Viable cell counts taken before and after imaging showed that a considerable amount of bacteria survived the monochromatic (30 KeV) X-ray exposure. Cementation experiments initiated with inoculation of the CMT column with microbes and urea media, cells were allowed to attach to particle surfaces, then subjected to sequential cementation treatments of urea media and calcium chloride. Current results indicate a morphological difference in formed CaCO3 depending on microbial acclimation to the system (i.e. surface attached or free floating microbes) and CaCO3 spatial arrangements within the porous matrix (i.e. pore necks or pore bodies). Our initial studies indicate that synchrotron CMT will be a powerful tool for pore-scale monitoring of biomineralization, a process relevant to geological carbon sequestration, bioremediation, enhanced oil recovery, slope stability and etc.

Impact of Martensite Spatial Distribution on Quasi-Static and Dynamic Deformation Behavior of Dual-Phase Steel

NASA Astrophysics Data System (ADS)

Singh, Manpreet; Das, Anindya; Venugopalan, T.; Mukherjee, Krishnendu; Walunj, Mahesh; Nanda, Tarun; Kumar, B. Ravi

2017-12-01

The effects of microstructure parameters of dual-phase steels on tensile high strain dynamic deformation characteristic were examined in this study. Cold-rolled steel sheets were annealed using three different annealing process parameters to obtain three different dual-phase microstructures of varied ferrite and martensite phase fraction. The volume fraction of martensite obtained in two of the steels was near identical ( 19 pct) with a subtle difference in its spatial distribution. In the first microstructure variant, martensite was mostly found to be situated at ferrite grain boundaries and in the second variant, in addition to at grain boundaries, in-grain martensite was also observed. The third microstructure was very different from the above two with respect to martensite volume fraction ( 67 pct) and its morphology. In this case, martensite packets were surrounded by a three-dimensional ferrite network giving an appearance of core and shell type microstructure. All the three steels were tensile deformed at strain rates ranging from 2.7 × 10-4 (quasi-static) to 650 s-1 (dynamic range). Field-emission scanning electron microscope was used to characterize the starting as well as post-tensile deformed microstructures. Dual-phase steel consisting of small martensite volume fraction ( 19 pct), irrespective of its spatial distribution, demonstrated high strain rate sensitivity and on the other hand, steel with large martensite volume fraction ( 67 pct) displayed a very little strain rate sensitivity. Interestingly, total elongation was found to increase with increasing strain rate in the dynamic regime for steel with core-shell type of microstructure containing large martensite volume fraction. The observed enhancement in plasticity in dynamic regime was attributed to adiabatic heating of specimen. To understand the evolving damage mechanism, the fracture surface and the vicinity of fracture ends were studied in all the three dual-phase steels.

Impact of Martensite Spatial Distribution on Quasi-Static and Dynamic Deformation Behavior of Dual-Phase Steel

NASA Astrophysics Data System (ADS)

Singh, Manpreet; Das, Anindya; Venugopalan, T.; Mukherjee, Krishnendu; Walunj, Mahesh; Nanda, Tarun; Kumar, B. Ravi

2018-02-01

The effects of microstructure parameters of dual-phase steels on tensile high strain dynamic deformation characteristic were examined in this study. Cold-rolled steel sheets were annealed using three different annealing process parameters to obtain three different dual-phase microstructures of varied ferrite and martensite phase fraction. The volume fraction of martensite obtained in two of the steels was near identical ( 19 pct) with a subtle difference in its spatial distribution. In the first microstructure variant, martensite was mostly found to be situated at ferrite grain boundaries and in the second variant, in addition to at grain boundaries, in-grain martensite was also observed. The third microstructure was very different from the above two with respect to martensite volume fraction ( 67 pct) and its morphology. In this case, martensite packets were surrounded by a three-dimensional ferrite network giving an appearance of core and shell type microstructure. All the three steels were tensile deformed at strain rates ranging from 2.7 × 10-4 (quasi-static) to 650 s-1 (dynamic range). Field-emission scanning electron microscope was used to characterize the starting as well as post-tensile deformed microstructures. Dual-phase steel consisting of small martensite volume fraction ( 19 pct), irrespective of its spatial distribution, demonstrated high strain rate sensitivity and on the other hand, steel with large martensite volume fraction ( 67 pct) displayed a very little strain rate sensitivity. Interestingly, total elongation was found to increase with increasing strain rate in the dynamic regime for steel with core-shell type of microstructure containing large martensite volume fraction. The observed enhancement in plasticity in dynamic regime was attributed to adiabatic heating of specimen. To understand the evolving damage mechanism, the fracture surface and the vicinity of fracture ends were studied in all the three dual-phase steels.

Integrating satellite actual evapotranspiration patterns into distributed model parametrization and evaluation for a mesoscale catchment

NASA Astrophysics Data System (ADS)

Demirel, M. C.; Mai, J.; Stisen, S.; Mendiguren González, G.; Koch, J.; Samaniego, L. E.

2016-12-01

Distributed hydrologic models are traditionally calibrated and evaluated against observations of streamflow. Spatially distributed remote sensing observations offer a great opportunity to enhance spatial model calibration schemes. For that it is important to identify the model parameters that can change spatial patterns before the satellite based hydrologic model calibration. Our study is based on two main pillars: first we use spatial sensitivity analysis to identify the key parameters controlling the spatial distribution of actual evapotranspiration (AET). Second, we investigate the potential benefits of incorporating spatial patterns from MODIS data to calibrate the mesoscale Hydrologic Model (mHM). This distributed model is selected as it allows for a change in the spatial distribution of key soil parameters through the calibration of pedo-transfer function parameters and includes options for using fully distributed daily Leaf Area Index (LAI) directly as input. In addition the simulated AET can be estimated at the spatial resolution suitable for comparison to the spatial patterns observed using MODIS data. We introduce a new dynamic scaling function employing remotely sensed vegetation to downscale coarse reference evapotranspiration. In total, 17 parameters of 47 mHM parameters are identified using both sequential screening and Latin hypercube one-at-a-time sampling methods. The spatial patterns are found to be sensitive to the vegetation parameters whereas streamflow dynamics are sensitive to the PTF parameters. The results of multi-objective model calibration show that calibration of mHM against observed streamflow does not reduce the spatial errors in AET while they improve only the streamflow simulations. We will further examine the results of model calibration using only multi spatial objective functions measuring the association between observed AET and simulated AET maps and another case including spatial and streamflow metrics together.

Inorganic Nanoparticle Induced Morphological Transition for Confined Self-Assembly of Block Copolymers within Emulsion Droplets.

PubMed

Zhang, Yan; He, Yun; Yan, Nan; Zhu, Yutian; Hu, Yuexin

2017-09-07

Recently, it has been reported that the incorporation of functional inorganic nanoparticles (NPs) into the three-dimensional (3D) confined self-assembly of block copolymers (BCPs) creates the unique nanostructured hybrid composites, which can not only introduce new functions to BCPs but also induce some interesting morphological transitions of BCPs. In the current study, we systematically investigate the cooperative self-assembly of a series of size-controlled and surface chemistry-tunable gold nanoparticles (AuNPs) and polystyrene-b-poly(2-vinylpyridine) (PS-b-P2VP) diblock copolymer within the emulsion droplets. The influences of the size, content, and surface chemistry of the AuNPs on the coassembled nanostructures as well as the spatial distribution of AuNPs in the hybrid particles are examined. It is found that the size and content of the AuNPs are related to the entropic interaction, while the surface chemistry of AuNPs is related to the enthalpic interaction, which can be utilized to tailor the self-assembled morphologies of block copolymer confined in the emulsion droplets. As the content of PS-coated AuNPs increases, the morphology of the resulting AuNPs/PS-b-P2VP hybrid particles changes from the pupa-like particles to the bud-like particles and then to the onion-like particles. However, a unique morphological transition from the pupa-like particles to the mushroom-like particles is observed as the content of P4VP-coated AuNPs increases. More interestingly, it is observed that the large AuNPs are expelled to the surface of the BCP particles to reduce the loss in the conformational entropy of the block segment, which can arrange into the strings of necklaces on the surfaces of the hybrid particles.

Spin disorder in maghemite nanoparticles investigated using polarized neutrons and nuclear resonant scattering

NASA Astrophysics Data System (ADS)

Herlitschke, M.; Disch, S.; Sergueev, I.; Schlage, K.; Wetterskog, E.; Bergström, L.; Hermann, R. P.

2016-04-01

The manuscript reports the investigation of spin disorder in maghemite nanoparticles of different shape by a combination of polarized small-angle neutron scattering (SANSPOL) and nuclear forward scattering (NFS) techniques. Both methods are sensitive to magnetization on the nanoscale. SANSPOL allows for investigation of the particle morphology and spatial magnetization distribution and NFS extends this nanoscale information to the atomic scale, namely the orientation of the hyperfine field experienced by the iron nuclei. The studied nanospheres and nanocubes with diameters of 7.4 nm and 10.6 nm, respectively, exhibit a significant spin disorder. This effect leads to a reduction of the magnetization to 44% and 58% of the theoretical maghemite bulk value, observed consistently by both techniques.

Phase gradient algorithm based on co-axis two-step phase-shifting interferometry and its application

NASA Astrophysics Data System (ADS)

Wang, Yawei; Zhu, Qiong; Xu, Yuanyuan; Xin, Zhiduo; Liu, Jingye

2017-12-01

A phase gradient method based on co-axis two-step phase-shifting interferometry, is used to reveal the detailed information of a specimen. In this method, the phase gradient distribution can only be obtained by calculating both the first-order derivative and the radial Hilbert transformation of the intensity difference between two phase-shifted interferograms. The feasibility and accuracy of this method were fully verified by the simulation results for a polystyrene sphere and a red blood cell. The empirical results demonstrated that phase gradient is sensitive to changes in the refractive index and morphology. Because phase retrieval and tedious phase unwrapping are not required, the calculation speed is faster. In addition, co-axis interferometry has high spatial resolution.

Bilevel thresholding of sliced image of sludge floc.

PubMed

Chu, C P; Lee, D J

2004-02-15

This work examined the feasibility of employing various thresholding algorithms to determining the optimal bilevel thresholding value for estimating the geometric parameters of sludge flocs from the microtome sliced images and from the confocal laser scanning microscope images. Morphological information extracted from images depends on the bilevel thresholding value. According to the evaluation on the luminescence-inverted images and fractal curves (quadric Koch curve and Sierpinski carpet), Otsu's method yields more stable performance than other histogram-based algorithms and is chosen to obtain the porosity. The maximum convex perimeter method, however, can probe the shapes and spatial distribution of the pores among the biomass granules in real sludge flocs. A combined algorithm is recommended for probing the sludge floc structure.

Morphological imaging and quantification of axial xylem tissue in Fraxinus excelsior L. through X-ray micro-computed tomography.

PubMed

Koddenberg, Tim; Militz, Holger

2018-05-05

The popularity of X-ray based imaging methods has continued to increase in research domains. In wood research, X-ray micro-computed tomography (XμCT) is useful for structural studies examining the three-dimensional and complex xylem tissue of trees qualitatively and quantitatively. In this study, XμCT made it possible to visualize and quantify the spatial xylem organization of the angiosperm species Fraxinus excelsior L. on the microscopic level. Through image analysis, it was possible to determine morphological characteristics of the cellular axial tissue (vessel elements, fibers, and axial parenchyma cells) three-dimensionally. X-ray imaging at high resolutions provides very distinct visual insight into the xylem structure. Numerical analyses performed through semi-automatic procedures made it possible to quickly quantify cell characteristics (length, diameter, and volume of cells). Use of various spatial resolutions (0.87-5 μm) revealed boundaries users should be aware of. Nevertheless, our findings, both qualitative and quantitative, demonstrate XμCT to be a valuable tool for studying the spatial cell morphology of F. excelsior. Copyright © 2018. Published by Elsevier Ltd.

Separating Bulk and Surface Contributions to Electronic Excited-State Processes in Hybrid Mixed Perovskite Thin Films via Multimodal All-Optical Imaging

DOE PAGES

Simpson, Mary Jane; Doughty, Benjamin; Das, Sanjib; ...

2017-07-04

A comprehensive understanding of electronic excited-state phenomena underlying the impressive performance of solution-processed hybrid halide perovskite solar cells requires access to both spatially resolved electronic processes and corresponding sample morphological characteristics. In this paper, we demonstrate an all-optical multimodal imaging approach that enables us to obtain both electronic excited-state and morphological information on a single optical microscope platform with simultaneous high temporal and spatial resolution. Specifically, images were acquired for the same region of interest in thin films of chloride containing mixed lead halide perovskites (CH 3NH 3PbI 3–xCl x) using femtosecond transient absorption, time-integrated photoluminescence, confocal reflectance, and transmissionmore » microscopies. Comprehensive image analysis revealed the presence of surface- and bulk-dominated contributions to the various images, which describe either spatially dependent electronic excited-state properties or morphological variations across the probed region of the thin films. Finally, these results show that PL probes effectively the species near or at the film surface.« less

Modelling Soil Erosion in the Densu River Basin Using RUSLE and GIS Tools.

PubMed

Ashiagbori, G; Forkuo, E K; Laari, P; Aabeyir, R

2014-07-01

Soil erosion involves detachment and transport of soil particles from top soil layers, degrading soil quality and reducing the productivity of affected lands. Soil eroded from the upland catchment causes depletion of fertile agricultural land and the resulting sediment deposited at the river networks creates river morphological change and reservoir sedimentation problems. However, land managers and policy makers are more interested in the spatial distribution of soil erosion risk than in absolute values of soil erosion loss. The aim of this paper is to model the spatial distribution of soil erosion in Densu River Basin of Ghana using RUSLE and GIS tools and to use the model to explore the relationship between erosion susceptibility, slope and land use/land cover (LULC) in the Basin. The rainfall map, digital elevation model, soil type map, and land cover map, were input data in the soil erosion model developed. This model was then categorized into four different erosion risk classes. The developed soil erosion map was then overlaid with the slope and LULC maps of the study area to explore their effects on erosion susceptibility of the soil in the Densu River Basin. The Model, predicted 88% of the basin as low erosion risk and 6% as moderate erosion risk, 3% as high erosion risk and 3% as severe risk. The high and severe erosion areas were distributed mainly within the areas of high slope gradient and also sections of the moderate forest LULC class. Also, the areas within the moderate forest LULC class found to have high erosion risk, had an intersecting high erodibility soil group.

Localization of ergot alkaloids in sclerotia of Claviceps purpurea by matrix-assisted laser desorption/ionization mass spectrometry imaging.

PubMed

Dopstadt, Julian; Vens-Cappell, Simeon; Neubauer, Lisa; Tudzynski, Paul; Cramer, Benedikt; Dreisewerd, Klaus; Humpf, Hans-Ulrich

2017-02-01

The fungus Claviceps purpurea produces highly toxic ergot alkaloids and accumulates these in the hardened bodies of fungal mycelium. These so-called sclerotia, or ergot bodies, replace the crop seed of infected plants, which can include numerous important food- and feedstuff such as rye and wheat. While several studies have explored details of the infection process and development of ergot bodies, little information is available on the spatial distribution of the mycotoxins in the sclerotia. Here we used matrix-assisted laser desorption/ionization mass spectrometry imaging (MALDI-MSI) at a lateral resolution of 35 μm to visualize the distribution of two representative alkaloids, ergocristine and ergometrine, produced by Ecc93 and Gal 310 variants of C. purpurea, respectively, after infection of rye. To improve cryosectioning of this fragile biological material tissue with complex texture, we developed a practical embedding protocol based on cellulose polymers. The MALDI-MS images recorded from the so produced intact tissues sections revealed that ergometrine exhibited a relatively homogeneous distribution throughout the ergot body, whereas ergocristine was found to be enriched in the proximal region. This finding can be correlated to the morphological development of sclerotia as ergot alkaloids are only produced in the sphacelial stage. The ability to localize toxins and other secondary metabolites in intact sections of crop-infecting fungi with high lateral resolution renders MALDI-MSI a powerful tool for investigating biosynthetic pathways and for obtaining a deeper understanding of the parasite-host interaction. Graphical abstract Workflow for identification and spatial localization of ergot alkaloids in infected rye grains.

Landslide susceptibility revealed by LIDAR imagery and historical records, Seattle, Washington

USGS Publications Warehouse

Schulz, W.H.

2007-01-01

Light detection and ranging (LIDAR) data were used to visually map landslides, headscarps, and denuded slopes in Seattle, Washington. Four times more landslides were mapped than by previous efforts that used aerial photographs. The mapped landforms (landslides, headscarps, and denuded slopes) were created by many individual landslides. The spatial distribution of mapped landforms and 1308 historical landslides show that historical landslide activity has been concentrated on the mapped landforms, and that most of the landslide activity that created the landforms was prehistoric. Thus, the spatial densities of historical landslides on the landforms provide approximations of the landforms' relative susceptibilities to future landsliding. Historical landslide characteristics appear to be closely related to landform type so relative susceptibilities were determined for landslides with various characteristics. No strong relations were identified between stratigraphy and landslide occurrence; however, landslide characteristics and slope morphology appear to be related to stratigraphic conditions. Human activity is responsible for causing about 80% of historical Seattle landslides. The distribution of mapped landforms and human-caused landslides suggests the probable characteristics of future human-caused landslides on each of the landforms. The distribution of mapped landforms and historical landslides suggests that erosion of slope-toes by surface water has been a necessary condition for causing Seattle landslides. Human activity has largely arrested this erosion, which implies that landslide activity will decrease with time as hillsides naturally stabilize. However, evaluation of glacial-age analogs of areas of recent slope-toe erosion suggests that landslide activity in Seattle will continue for the foreseeable future. ?? 2006 Elsevier B.V. All rights reserved.

Geomorphology of Triton's polar materials

NASA Technical Reports Server (NTRS)

Croft, Steven K.

1993-01-01

One of Triton's most debated puzzles is the nature, distribution, and transport of its atmospheric volatiles. The full potential of constraints provided by detailed observations of the morphology and distribution of the polar deposits has not been realized. The objective of this study is characterization of the morphology, distribution, stratigraphy, and geologic setting of Triton's polar materials.

MicroCT-based phenomics in the zebrafish skeleton reveals virtues of deep phenotyping in a distributed organ system.

PubMed

Hur, Matthew; Gistelinck, Charlotte A; Huber, Philippe; Lee, Jane; Thompson, Marjorie H; Monstad-Rios, Adrian T; Watson, Claire J; McMenamin, Sarah K; Willaert, Andy; Parichy, David M; Coucke, Paul; Kwon, Ronald Y

2017-09-08

Phenomics, which ideally involves in-depth phenotyping at the whole-organism scale, may enhance our functional understanding of genetic variation. Here, we demonstrate methods to profile hundreds of phenotypic measures comprised of morphological and densitometric traits at a large number of sites within the axial skeleton of adult zebrafish. We show the potential for vertebral patterns to confer heightened sensitivity, with similar specificity, in discriminating mutant populations compared to analyzing individual vertebrae in isolation. We identify phenotypes associated with human brittle bone disease and thyroid stimulating hormone receptor hyperactivity. Finally, we develop allometric models and show their potential to aid in the discrimination of mutant phenotypes masked by alterations in growth. Our studies demonstrate virtues of deep phenotyping in a spatially distributed organ system. Analyzing phenotypic patterns may increase productivity in genetic screens, and facilitate the study of genetic variants associated with smaller effect sizes, such as those that underlie complex diseases.

In Situ Generation of Plasmonic Nanoparticles for Manipulating Photon-Plasmon Coupling in Microtube Cavities.

PubMed

Yin, Yin; Wang, Jiawei; Lu, Xueyi; Hao, Qi; Saei Ghareh Naz, Ehsan; Cheng, Chuanfu; Ma, Libo; Schmidt, Oliver G

2018-04-24

In situ generation of silver nanoparticles for selective coupling between localized plasmonic resonances and whispering-gallery modes (WGMs) is investigated by spatially resolved laser dewetting on microtube cavities. The size and morphology of the silver nanoparticles are changed by adjusting the laser power and irradiation time, which in turn effectively tune the photon-plasmon coupling strength. Depending on the relative position of the plasmonic nanoparticles spot and resonant field distribution of WGMs, selective coupling between the localized surface plasmon resonances (LSPRs) and WGMs is experimentally demonstrated. Moreover, by creating multiple plasmonic-nanoparticle spots on the microtube cavity, the field distribution of optical axial modes is freely tuned due to multicoupling between LSPRs and WGMs. The multicoupling mechanism is theoretically investigated by a modified quasipotential model based on perturbation theory. This work provides an in situ fabrication of plasmonic nanoparticles on three-dimensional microtube cavities for manipulating photon-plasmon coupling which is of interest for optical tuning abilities and enhanced light-matter interactions.

Biofilm architecture in a novel pressurized biofilm reactor.

PubMed

Jiang, Wei; Xia, Siqing; Duan, Liang; Hermanowicz, Slawomir W

2015-01-01

A novel pure-oxygen pressurized biofilm reactor was operated at different organic loading, mechanical shear and hydrodynamic conditions to understand the relationships between biofilm architecture and its operation. The ultimate goal was to improve the performance of the biofilm reactor. The biofilm was labeled with seven stains and observed with confocal laser scanning microscopy. Unusual biofilm architecture of a ribbon embedded between two surfaces with very few points of attachment was observed. As organic loading increased, the biofilm morphology changed from a moderately rough layer into a locally smoother biomass with significant bulging protuberances, although the chemical oxygen demand (COD) removal efficiency remained unchanged at about 75%. At higher organic loadings, biofilms contained a larger fraction of active cells distributed uniformly within a proteinaceous matrix with decreasing polysaccharide content. Higher hydrodynamic shear in combination with high organic loading resulted in the collapse of biofilm structure and a substantial decrease in reactor performance (a COD removal of 16%). Moreover, the important role of proteins for the spatial distribution of active cells was demonstrated quantitatively.

Simultaneous in vivo positron emission tomography and magnetic resonance imaging.

PubMed

Catana, Ciprian; Procissi, Daniel; Wu, Yibao; Judenhofer, Martin S; Qi, Jinyi; Pichler, Bernd J; Jacobs, Russell E; Cherry, Simon R

2008-03-11

Positron emission tomography (PET) and magnetic resonance imaging (MRI) are widely used in vivo imaging technologies with both clinical and biomedical research applications. The strengths of MRI include high-resolution, high-contrast morphologic imaging of soft tissues; the ability to image physiologic parameters such as diffusion and changes in oxygenation level resulting from neuronal stimulation; and the measurement of metabolites using chemical shift imaging. PET images the distribution of biologically targeted radiotracers with high sensitivity, but images generally lack anatomic context and are of lower spatial resolution. Integration of these technologies permits the acquisition of temporally correlated data showing the distribution of PET radiotracers and MRI contrast agents or MR-detectable metabolites, with registration to the underlying anatomy. An MRI-compatible PET scanner has been built for biomedical research applications that allows data from both modalities to be acquired simultaneously. Experiments demonstrate no effect of the MRI system on the spatial resolution of the PET system and <10% reduction in the fraction of radioactive decay events detected by the PET scanner inside the MRI. The signal-to-noise ratio and uniformity of the MR images, with the exception of one particular pulse sequence, were little affected by the presence of the PET scanner. In vivo simultaneous PET and MRI studies were performed in mice. Proof-of-principle in vivo MR spectroscopy and functional MRI experiments were also demonstrated with the combined scanner.

Streamer properties and associated x-rays in perturbed air

NASA Astrophysics Data System (ADS)

Köhn, C.; Chanrion, O.; Babich, L. P.; Neubert, T.

2018-01-01

Streamers are ionization waves in electric discharges. One of the key ingredients of streamer propagation is an ambient gas that serves as a source of free electrons. Here, we explore the dependence of streamer dynamics on different spatial distributions of ambient air molecules. We vary the spatial profile of air parallel and perpendicular to the ambient electric field. We consider local sinusoidal perturbations of 5%-100%, as induced from discharge shock waves. We use a cylindrically symmetric particle-in-cell code to simulate the evolution of bidirectional streamers and compare the electron density, electric field, streamer velocity and electron energy of streamers in uniform air and in perturbed air. In all considered cases, the motion is driven along in decreasing air density and damped along increasing air density. Perturbations of at most 5%-10% change the velocity differences by up to approximately 40%. Perturbations perpendicular to the electric field additionally squeeze or branch streamers. Air variations can thus partly explain the difference of velocities and morphologies of streamer discharges. In cases with large perturbations, electrons gain energies of up to 30 keV compared to 100 eV in uniformly distributed air. For such perturbations parallel to the ambient electric field, we see the spontaneous initiation of a negative streamer; for perpendicular perturbations, x-rays with energies of up to 20 keV are emitted within 0.17 ns.

At Limits of Life: Multidisciplinary Insights Reveal Environmental Constraints on Biotic Diversity in Continental Antarctica

PubMed Central

Magalhães, Catarina; Stevens, Mark I.; Cary, S. Craig; Ball, Becky A.; Storey, Bryan C.; Wall, Diana H.; Türk, Roman; Ruprecht, Ulrike

2012-01-01

Multitrophic communities that maintain the functionality of the extreme Antarctic terrestrial ecosystems, while the simplest of any natural community, are still challenging our knowledge about the limits to life on earth. In this study, we describe and interpret the linkage between the diversity of different trophic level communities to the geological morphology and soil geochemistry in the remote Transantarctic Mountains (Darwin Mountains, 80°S). We examined the distribution and diversity of biota (bacteria, cyanobacteria, lichens, algae, invertebrates) with respect to elevation, age of glacial drift sheets, and soil physicochemistry. Results showed an abiotic spatial gradient with respect to the diversity of the organisms across different trophic levels. More complex communities, in terms of trophic level diversity, were related to the weakly developed younger drifts (Hatherton and Britannia) with higher soil C/N ratio and lower total soluble salts content (thus lower conductivity). Our results indicate that an increase of ion concentration from younger to older drift regions drives a succession of complex to more simple communities, in terms of number of trophic levels and diversity within each group of organisms analysed. This study revealed that integrating diversity across multi-trophic levels of biotic communities with abiotic spatial heterogeneity and geological history is fundamental to understand environmental constraints influencing biological distribution in Antarctic soil ecosystems. PMID:23028563

Young stellar population and star formation history ofW4 HII region/Cluster Complex

NASA Astrophysics Data System (ADS)

Panwar, Neelam

2018-04-01

The HII region/cluster complex has been a subject of numerous investigations to study the feedback effect of massive stars on their surroundings. Massive stars not only alter the morphology of the parental molecular clouds, but also influence star formation, circumstellar disks and the mass function of low-mass stars in their vicinity. However, most of the studies of low-mass stellar content of the HII regions are limited only to the nearby regions. We study the star formation in the W4 HII region using deep optical observations obtained with the archival data from Canada - France - Hawaii Telescope, Two-Micron All Sky Survey, Spitzer, Herschel and Chandra. We investigate the spatial distribution of young stellar objects in the region, their association with the remnant molecular clouds, and search for the clustering to establish the sites of recent star formation. Our analysis suggests that the influence of massive stars on circumstellar disks is significant only to thei! r immediate neighborhood. The spatial correlation of the young stars with the distribution of gas and dust of the complex indicate that the clusters would have formed in a large filamentary cloud. The observing facilities at the 3.6-m Devasthal Optical Telescope (DOT), providing high-resolution spectral and imaging capabilities, will fulfill the major objectives in the study of HII regions.

The first CO+ image: I. Probing the HI/H2 layer around the ultracompact HII region Mon R2

PubMed Central

Treviño-Morales, S. P.; Fuente, A.; Sánchez-Monge, Á.; Pilleri, P.; Goicoechea, J. R.; Ossenkopf-Okada, V.; Roueff, E.; Rizzo, J. R.; Gerin, M.; Berné, O.; Cernicharo, J.; Gónzalez-García, M.; Kramer, C.; García-Burillo, S.; Pety, J.

2016-01-01

The CO+ reactive ion is thought to be a tracer of the boundary between a HII region and the hot molecular gas. In this study, we present the spatial distribution of the CO+ rotational emission toward the Mon R2 star-forming region. The CO+ emission presents a clumpy ring-like morphology, arising from a narrow dense layer around the HII region. We compare the CO+ distribution with other species present in photon-dominated regions (PDR), such as [CII] 158 µm, H2 S(3) rotational line at 9.3 µm, polycyclic aromatic hydrocarbons (PAHs) and HCO+. We find that the CO+ emission is spatially coincident with the PAHs and [CII] emission. This confirms that the CO+ emission arises from a narrow dense layer of the HI/H2 interface. We have determined the CO+ fractional abundance, relative to C+ toward three positions. The abundances range from 0.1 to 1.9 ×10−10 and are in good agreement with previous chemical model, which predicts that the production of CO+ in PDRs only occurs in dense regions with high UV fields. The CO+ linewidth is larger than those found in molecular gas tracers, and their central velocity are blue-shifted with respect to the molecular gas velocity. We interpret this as a hint that the CO+ is probing photo-evaporating clump surfaces. PMID:27721515

The Morphological Diversity of DIG in Halos of Edge-on Spirals as Revealed by HST/ACS

NASA Astrophysics Data System (ADS)

Rossa, J.; Dahlem, M.; Dettmar, R.-J.; van der Marel, R. P.

2012-09-01

We present new results on extraplanar DIG (eDIG), based on high spatial resolution narrowband imaging observations of four late-type, actively star-forming edge-on spirals, obtained with ACS on-board HST. Our Hα observations reveal a multitude of structures on both small and large scales. Whereas all four galaxies have been studied with ground-based telescopes before, here the small scale structure of the extended emission line gas is presented for the very first time at a spatial resolution of 0.05'', corresponding to 5 pc at the mean distance to our galaxies. The eDIG morphology is very different for all four targets, as a result of their different star formation activity and galaxy mass. There is a very smooth DIG morphology observed in two of the galaxies (NGC 4634 and NGC 5775), whereas the other two (NGC 4700 and NGC 7090) show a much more complex morphology with intricate filaments, and bubbles and supershells. We find that the morphology of the eDIG, in particular the break-up of diffuse emission into filaments in galaxy halos, shows a strong dependence on the level of star formation activity per unit area, and eDIG can be arranged into a morphological sequence.

Spatial structure of morphological and neutral genetic variation in Brook Trout

USGS Publications Warehouse

Kazyak, David C.; Hilderbrand, Robert H.; Keller, Stephen R.; Colaw, Mark C.; Holloway, Amanda E.; Morgan, Raymond P.; King, Timothy L.

2015-01-01

Brook Trout Salvelinus fontinalis exhibit exceptional levels of life history variation, remarkable genetic variability, and fine-scale population structure. In many cases, neighboring populations may be highly differentiated from one another to an extent that is comparable with species-level distinctions in other taxa. Although genetic samples have been collected from hundreds of populations and tens of thousands of individuals, little is known about whether differentiation at neutral markers reflects phenotypic differences among Brook Trout populations. We compared differentiation in morphology and neutral molecular markers among populations from four geographically proximate locations (all within 24 km) to examine how genetic diversity covaries with morphology. We found significant differences among and/or within streams for all three morphological axes examined and identified the source stream of many individuals based on morphology (52.3% classification efficiency). Although molecular and morphological differentiation among streams ranged considerably (mean pairwise FST: 0.023–0.264; pairwise PST: 0.000–0.339), the two measures were not significantly correlated. While in some cases morphological characters appear to have diverged to a greater extent than expected by neutral genetic drift, many traits were conserved to a greater extent than were neutral genetic markers. Thus, while Brook Trout exhibit fine-scale spatial patterns in both morphology and neutral genetic diversity, these types of biological variabilities are being structured by different ecological and evolutionary processes. The relative influences of genetic drift versus selection and phenotypic plasticity in shaping morphology appear to vary among populations occupying nearby streams.

Titan's fluvial valleys: Morphology, distribution, and spectral properties

USGS Publications Warehouse

Langhans, M.H.; Jaumann, R.; Stephan, K.; Brown, R.H.; Buratti, B.J.; Clark, R.N.; Baines, K.H.; Nicholson, P.D.; Lorenz, R.D.; Soderblom, L.A.; Soderblom, J.M.; Sotin, Christophe; Barnes, J.W.; Nelson, R.

2012-01-01

Titan's fluvial channels have been investigated based on data obtained by the Synthetic Aperture Radar (SAR) instrument and the Visible and Infrared Mapping Spectrometer (VIMS) onboard the Cassini spacecraft. In this paper, a database of fluvial features is created based on radar-SAR data aiming to unveil the distribution and the morphologic and spectral characteristics of valleys on Titan on a global scale. It will also study the spatial relations between fluvial valleys and Titan's geologic units and spectral surface units which have become accessible thanks to Cassini-VIMS data. Several distinct morphologic types of fluvial valleys can be discerned by SAR-images. Dendritic valley networks appear to have much in common with terrestrial dendritic systems owing to a hierarchical and tree-shaped arrangement of the tributaries which is indicative of an origin from precipitation. Dry valleys constitute another class of valleys resembling terrestrial wadis, an indication of episodic and strong flow events. Other valley types, such as putative canyons, cannot be correlated with rainfall based on their morphology alone, since it cannot be ruled out that they may have originated from volcanic/tectonic action or groundwater sapping. Highly developed and complex fluvial networks with channel lengths of up to 1200 km and widths of up to 10 km are concentrated only at a few locations whereas single valleys are scattered over all latitudes. Fluvial valleys are frequently found in mountainous areas. Some terrains, such as equatorial dune fields and undifferentiated plains at mid-latitudes, are almost entirely free of valleys. Spectrally, fluvial terrains are often characterized by a high reflectance in each of Titan's atmospheric windows, as most of them are located on Titan's bright 'continents'. Nevertheless, valleys are spatially associated with a surface unit appearing blue due to its higher reflection at 1.3??m in a VIMS false color RGB composite with R: 1.59/1.27??m, G: 2.03/1.27??m, and B: 1.27/1.08??m; the channels either dissect pure bluish surface units or they are carved into terrain with a mixed spectral signature between bright and bluish surface materials. The global picture of fluvial flows clearly indicates a high diversity of parameters controlling fluvial erosion, such as climatic processes, as well as surface and bedrock types. Recent fluvial activity is very likely in the north polar region in contrast to more arid conditions at lower latitudes and at the south pole of Titan. This divergence is probably an indication of seasonal climatic asymmetries between the hemispheres. However, traces of previous fluvial activity are scattered over all latitudes of Titan, which is indicative of previous climatic conditions with at least episodic rainfall. ?? 2011 Elsevier Ltd. All rights reserved.

High-resolution 3D analyses of the shape and internal constituents of small volcanic ash particles: The contribution of SEM micro-computed tomography (SEM micro-CT)

NASA Astrophysics Data System (ADS)

Vonlanthen, Pierre; Rausch, Juanita; Ketcham, Richard A.; Putlitz, Benita; Baumgartner, Lukas P.; Grobéty, Bernard

2015-02-01

The morphology of small volcanic ash particles is fundamental to our understanding of magma fragmentation, and in transport modeling of volcanic plumes and clouds. Until recently, the analysis of 3D features in small objects (< 250 μm) was either restricted to extrapolations from 2D approaches, partial stereo-imaging, or CT methods having limited spatial resolution and/or accessibility. In this study, an X-ray computed-tomography technique known as SEM micro-CT, also called 3D X-ray ultramicroscopy (3D XuM), was used to investigate the 3D morphology of small volcanic ash particles (125-250 μm sieve fraction), as well as their vesicle and microcrystal distribution. The samples were selected from four stratigraphically well-established tephra layers of the Meerfelder Maar (West Eifel Volcanic Field, Germany). Resolution tests performed on a Beametr v1 pattern sample along with Monte Carlo simulations of X-ray emission volumes indicated that a spatial resolution of 0.65 μm was obtained for X-ray shadow projections using a standard thermionic SEM and a bulk brass target as X-ray source. Analysis of a smaller volcanic ash particle (64-125 μm sieve fraction) showed that features with volumes > 20 μm3 (~ 3.5 μm in diameter) can be successfully reconstructed and quantified. In addition, new functionalities of the Blob3D software were developed to allow the particle shape factors frequently used as input parameters in ash transport and dispersion models to be calculated. This study indicates that SEM micro-CT is very well suited to quantify the various aspects of shape in fine volcanic ash, and potentially also to investigate the 3D morphology and internal structure of any object < 0.1 mm3.

Three-dimensional flow structure and patterns of bed shear stress in an evolving compound meander bend

USGS Publications Warehouse

Engel, Frank; Rhoads, Bruce L.

2016-01-01

Compound meander bends with multiple lobes of maximum curvature are common in actively evolving lowland rivers. Interaction among spatial patterns of mean flow, turbulence, bed morphology, bank failures and channel migration in compound bends is poorly understood. In this paper, acoustic Doppler current profiler (ADCP) measurements of the three-dimensional (3D) flow velocities in a compound bend are examined to evaluate the influence of channel curvature and hydrologic variability on the structure of flow within the bend. Flow structure at various flow stages is related to changes in bed morphology over the study timeframe. Increases in local curvature within the upstream lobe of the bend reduce outer bank velocities at morphologically significant flows, creating a region that protects the bank from high momentum flow and high bed shear stresses. The dimensionless radius of curvature in the upstream lobe is one-third less than that of the downstream lobe, with average bank erosion rates less than half of the erosion rates for the downstream lobe. Higher bank erosion rates within the downstream lobe correspond to the shift in a core of high velocity and bed shear stresses toward the outer bank as flow moves through the two lobes. These erosion patterns provide a mechanism for continued migration of the downstream lobe in the near future. Bed material size distributions within the bend correspond to spatial patterns of bed shear stress magnitudes, indicating that bed material sorting within the bend is governed by bed shear stress. Results suggest that patterns of flow, sediment entrainment, and planform evolution in compound meander bends are more complex than in simple meander bends. Moreover, interactions among local influences on the flow, such as woody debris, local topographic steering, and locally high curvature, tend to cause compound bends to evolve toward increasing planform complexity over time rather than stable configurations.

The dynamics of sensory buffers: geometric, spatial, and experience-dependent shaping of iconic memory.

PubMed

Graziano, Martin; Sigman, Mariano

2008-05-23

When a stimulus is presented, its sensory trace decays rapidly, lasting for approximately 1000 ms. This brief and labile memory, referred as iconic memory, serves as a buffer before information is transferred to working memory and executive control. Here we explored the effect of different factors--geometric, spatial, and experience--with respect to the access and the maintenance of information in iconic memory and the progressive distortion of this memory. We studied performance in a partial report paradigm, a design wherein recall of only part of a stimulus array is required. Subjects had to report the identity of a letter in a location that was cued in a variable delay after the stimulus onset. Performance decayed exponentially with time, and we studied the different parameters (time constant, zero-delay value, and decay amplitude) as a function of the different factors. We observed that experience (determined by letter frequency) affected the access to iconic memory but not the temporal decay constant. On the contrary, spatial position affected the temporal course of delay. The entropy of the error distribution increased with time reflecting a progressive morphological distortion of the iconic buffer. We discuss our results on the context of a model of information access to executive control and how it is affected by learning and attention.

Combined multispectral spatial frequency domain imaging and computed tomography system for intraoperative breast tumor margin assessment

NASA Astrophysics Data System (ADS)

McClatchy, D. M.; Rizzo, E. J.; Krishnaswamy, V.; Kanick, S. C.; Wells, W. A.; Paulsen, K. D.; Pogue, B. W.

2017-02-01

There is a dire clinical need for surgical margin guidance in breast conserving therapy (BCT). We present a multispectral spatial frequency domain imaging (SFDI) system, spanning the visible and near-infrared (NIR) wavelengths, combined with a shielded X-ray computed tomography (CT) system, designed for intraoperative breast tumor margin assessment. While the CT can provide a volumetric visualization of the tumor core and its spiculations, the co-registered SFDI can provide superficial and quantitative information about localized changes tissue morphology from light scattering parameters. These light scattering parameters include both model-based parameters of sub-diffusive light scattering related to the particle size scale distribution and also textural information of the high spatial frequency reflectance. Because the SFDI and CT components are rigidly fixed, a simple transformation can be used to simultaneously display the SFDI and CT data in the same coordinate system. This is achieved through the Visualization Toolkit (vtk) file format in the open-source Slicer medical imaging software package. In this manuscript, the instrumentation, data processing, and preliminary human specimen data will be presented. The ultimate goal of this work is to evaluate this technology in a prospective clinical trial, and the current limitations and engineering solutions to meet this goal will also be discussed.

Spectral identification of geological units on the surface of Mars related to the presence of silicates from Earth-based near-infrared telescopic charge-coupled device imaging

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pinet, P.; Chevrel, S.

1990-08-30

During the September 1988 Mars opposition, the authors obtained new high spatial (100-150 km) and spectral ({Delta}{lambda}/{lambda} = 1%) resolution near-IR telescopic charge-coupled device images of Mars from Pic-du-Midi Observatory. These images allow the association of spectral units with morphologic surface units on Mars, especially within the dark regions which exhibit much greater variability than the bright regions. Mineralogical interpretation of the data leads to a global description of the surface state of alteration consistent with the spatial distribution of bright and dark regions, with the bright regions being more altered than the dark. Within the less altered regions, Fe{supmore » 2+} crystal field absorption bands are detected, indicative of the presence of mafic minerals (Opx, Cpx, O1) in agreement with a likely crustal basaltic composition. The most conspicuous Fe{sup 2+} absorption features are clearly related to the volcanic regions of the Syrtis Major Shield and Hesperia Planum unit. The strongest observed absorptions due to olivine and clinopyroxene are spatially associated with the restricted central caldera complex of Nili-Meroe Paterae (within Syrtis Major) and the Tyrrhena Patera unit (within Hesperia Planum) and indicate an ultramafic composition.« less

[Spatial distribution pattern of Pontania dolichura larvae and sampling technique].

PubMed

Zhang, Feng; Chen, Zhijie; Zhang, Shulian; Zhao, Huiyan

2006-03-01

In this paper, the spatial distribution pattern of Pontania dolichura larvae was analyzed with Taylor's power law, Iwao's distribution function, and six aggregation indexes. The results showed that the spatial distribution pattern of P. dolichura larvae was of aggregated, and the basic component of the distribution was individual colony, with the aggregation intensity increased with density. On branches, the aggregation was caused by the adult behavior of laying eggs and the spatial position of leaves, while on leaves, the aggregation was caused by the spatial position of news leaves in spring when m < 2.37, and by the spatial position of news leaves in spring and the behavior of eclosion and laying eggs when m > 2.37. By using the parameters alpha and beta in Iwao's m * -m regression equation, the optimal and sequential sampling numbers were determined.

Partial Least Square Discriminant Analysis Based on Normalized Two-Stage Vegetation Indices for Mapping Damage from Rice Diseases Using PlanetScope Datasets.

PubMed

Shi, Yue; Huang, Wenjiang; Ye, Huichun; Ruan, Chao; Xing, Naichen; Geng, Yun; Dong, Yingying; Peng, Dailiang

2018-06-11

In recent decades, rice disease co-epidemics have caused tremendous damage to crop production in both China and Southeast Asia. A variety of remote sensing based approaches have been developed and applied to map diseases distribution using coarse- to moderate-resolution imagery. However, the detection and discrimination of various disease species infecting rice were seldom assessed using high spatial resolution data. The aims of this study were (1) to develop a set of normalized two-stage vegetation indices (VIs) for characterizing the progressive development of different diseases with rice; (2) to explore the performance of combined normalized two-stage VIs in partial least square discriminant analysis (PLS-DA); and (3) to map and evaluate the damage caused by rice diseases at fine spatial scales, for the first time using bi-temporal, high spatial resolution imagery from PlanetScope datasets at a 3 m spatial resolution. Our findings suggest that the primary biophysical parameters caused by different disease (e.g., changes in leaf area, pigment contents, or canopy morphology) can be captured using combined normalized two-stage VIs. PLS-DA was able to classify rice diseases at a sub-field scale, with an overall accuracy of 75.62% and a Kappa value of 0.47. The approach was successfully applied during a typical co-epidemic outbreak of rice dwarf (Rice dwarf virus, RDV), rice blast ( Magnaporthe oryzae ), and glume blight ( Phyllosticta glumarum ) in Guangxi Province, China. Furthermore, our approach highlighted the feasibility of the method in capturing heterogeneous disease patterns at fine spatial scales over the large spatial extents.

Retinal ganglion cells in the eastern newt Notophthalmus viridescens: topography, morphology, and diversity.

PubMed

Pushchin, Igor I; Karetin, Yuriy A

2009-10-20

The topography and morphology of retinal ganglion cells (RGCs) in the eastern newt were studied. Cells were retrogradely labeled with tetramethylrhodamine-conjugated dextran amines or horseradish peroxidase and examined in retinal wholemounts. Their total number was 18,025 +/- 3,602 (mean +/- SEM). The spatial density of RGCs varied from 2,100 cells/mm(2) in the retinal periphery to 4,500 cells/mm(2) in the dorsotemporal retina. No prominent retinal specializations were found. The spatial resolution estimated from the spatial density of RGCs varied from 1.4 cycles per degree in the periphery to 1.95 cycles per degree in the region of the peak RGC density. A sample of 68 cells was camera lucida drawn and subjected to quantitative analysis. A total of 21 parameters related to RGC morphology and stratification in the retina were estimated. Partitionings obtained by using different clustering algorithms combined with automatic variable weighting and dimensionality reduction techniques were compared, and an effective solution was found by using silhouette analysis. A total of seven clusters were identified and associated with potential cell types. Kruskal-Wallis ANOVA-on-Ranks with post hoc Mann-Whitney U tests showed significant pairwise between-cluster differences in one or more of the clustering variables. The average silhouette values of the clusters were reasonably high, ranging from 0.52 to 0.79. Cells assigned to the same cluster displayed similar morphology and stratification in the retina. The advantages and limitations of the methodology adopted are discussed. The present classification is compared with known morphological and physiological RGC classifications in other salamanders.

In vivo analysis of the time and spatial activation pattern of microglia in the retina following laser-induced choroidal neovascularization.

PubMed

Crespo-Garcia, Sergio; Reichhart, Nadine; Hernandez-Matas, Carlos; Zabulis, Xenophon; Kociok, Norbert; Brockmann, Claudia; Joussen, Antonia M; Strauss, Olaf

2015-10-01

Microglia play a major role in retinal neovascularization and degeneration and are thus potential targets for therapeutic intervention. In vivo assessment of microglia behavior in disease models can provide important information to understand patho-mechanisms and develop therapeutic strategies. Although scanning laser ophthalmoscope (SLO) permits the monitoring of microglia in transgenic mice with microglia-specific GFP expression, there are fundamental limitations in reliable identification and quantification of activated cells. Therefore, we aimed to improve the SLO-based analysis of microglia using enhanced image processing with subsequent testing in laser-induced neovascularization (CNV). CNV was induced by argon laser in MacGreen mice. Microglia was visualized in vivo by SLO in the fundus auto-fluorescence (FAF) mode and verified ex vivo using retinal preparations. Three image processing algorithms based on different analysis of sequences of images were tested. The amount of recorded frames was limiting the effectiveness of the different algorithms. Best results from short recordings were obtained with a pixel averaging algorithm, further used to quantify spatial and temporal distribution of activated microglia in CNV. Morphologically, different microglia populations were detected in the inner and outer retinal layers. In CNV, the peak of microglia activation occurred in the inner layer at day 4 after laser, lacking an acute reaction. Besides, the spatial distribution of the activation changed by the time over the inner retina. No significant time and spatial changes were observed in the outer layer. An increase in laser power did not increase number of activated microglia. The SLO, in conjunction with enhanced image processing, is suitable for in vivo quantification of microglia activation. This surprisingly revealed that laser damage at the outer retina led to more reactive microglia in the inner retina, shedding light upon a new perspective to approach the immune response in the retina in vivo. Copyright © 2015 Elsevier Ltd. All rights reserved.

Strong Predictability Of Spatially Distributed Physical Habitat Preferences For O. Mykiss Spawning Across Three Spatial Scales

NASA Astrophysics Data System (ADS)

Kammel, L.; Pasternack, G. B.; Wyrick, J. R.; Massa, D.; Bratovich, P.; Johnson, T.

2012-12-01

Currently accepted perception assumes Oncorhynchus mykiss prefer different ranges of similar physical habitat elements for spawning than Chinook salmon (Oncorhynchus tshawytscha), taking into account their difference in size. While there is increasing research interest regarding O. mykiss habitat use and migratory behavior, research conducted to date distinguishing the physical habitat conditions utilized for O. mykiss spawning has not provided quantified understanding of their spawning habitat preferences. The purpose of this study was to use electivity indices and other measures to assess the physical habitat characteristics preferred for O. mykiss spawning in terms of both 1-m scale microhabitat attributes, and landforms at different spatial scales from 0.1-100 times channel width. The testbed for this study was the 37.5-km regulated gravel-cobble Lower Yuba River (LYR). Using spatially distributed 2D hydrodynamic model results, substrate mapping, and a census of O. mykiss redds from two years of observation, micro- and meso-scale representations of physical habitat were tested for their ability to predict spawning habitat preference and avoidance. Overall there was strong stratification of O. mykiss redd occurrence for all representation types of physical habitat. A strong preference of hydraulic conditions was shown for mean water column velocities of 1.18-2.25 ft/s, and water depths of 1.25-2.76 ft. There was a marked preference for the two most upstream alluvial reaches of the LYR (out of 8 total reaches), accounting for 92% of all redds observed. The preferred morphological units (MUs) for O. mykiss spawning were more variable than for Chinook salmon and changed with increasing discharge, demonstrating that O. mykiss shift spawning to different MUs in order to utilize their preferred hydraulic conditions. The substrate range preferred for O. mykiss spawning was within 32-90 mm. Overall, O. mykiss spawning behavior was highly predictable and required a holistic blend of hydraulic and geomorphic representations to explain.

Particulate Organic Matter Distribution along the Lower Amazon River: Addressing Aquatic Ecology Concepts Using Fatty Acids

PubMed Central

Mortillaro, Jean-Michel; Rigal, François; Rybarczyk, Hervé; Bernardes, Marcelo; Abril, Gwenaël; Meziane, Tarik

2012-01-01

One of the greatest challenges in understanding the Amazon basin functioning is to ascertain the role played by floodplains in the organic matter (OM) cycle, crucial for a large spectrum of ecological mechanisms. Fatty acids (FAs) were combined with environmental descriptors and analyzed through multivariate and spatial tools (asymmetric eigenvector maps, AEM and principal coordinates of neighbor matrices, PCNM). This challenge allowed investigating the distribution of suspended particulate organic matter (SPOM), in order to trace its seasonal origin and quality, along a 800 km section of the Amazon river-floodplain system. Statistical analysis confirmed that large amounts of saturated FAs (15:0, 18:0, 24:0, 25:0 and 26:0), an indication of refractory OM, were concomitantly recorded with high pCO2 in rivers, during the high water season (HW). Contrastingly, FAs marker which may be attributed in this ecosystem to aquatic plants (18:2ω6 and 18:3ω3) and cyanobacteria (16:1ω7), were correlated with higher O2, chlorophyll a and pheopigments in floodplains, due to a high primary production during low waters (LW). Decreasing concentrations of unsaturated FAs, that characterize labile OM, were recorded during HW, from upstream to downstream. Furthermore, using PCNM and AEM spatial methods, FAs compositions of SPOM displayed an upstream-downstream gradient during HW, which was attributed to OM retention and the extent of flooded forest in floodplains. Discrimination of OM quality between the Amazon River and floodplains corroborate higher autotrophic production in the latter and transfer of OM to rivers at LW season. Together, these gradients demonstrate the validity of FAs as predictors of spatial and temporal changes in OM quality. These spatial and temporal trends are explained by 1) downstream change in landscape morphology as predicted by the River Continuum Concept; 2) enhanced primary production during LW when the water level decreased and its residence time increased as predicted by the Flood Pulse Concept. PMID:23029412

Constraining the effects of permeability uncertainty for geologic CO2 sequestration in a basalt reservoir

NASA Astrophysics Data System (ADS)

Jayne, R., Jr.; Pollyea, R.

2016-12-01

Carbon capture and sequestration (CCS) in geologic reservoirs is one strategy for reducing anthropogenic CO2 emissions from large-scale point-source emitters. Recent developments at the CarbFix CCS pilot in Iceland have shown that basalt reservoirs are highly effective for permanent mineral trapping on the basis of CO2-water-rock interactions, which result in the formation of carbonates minerals. In order to advance our understanding of basalt sequestration in large igneous provinces, this research uses numerical simulation to evaluate the feasibility of industrial-scale CO2 injections in the Columbia River Basalt Group (CRBG). Although bulk reservoir properties are well constrained on the basis of field and laboratory testing from the Wallula Basalt Sequestration Pilot Project, there remains significant uncertainty in the spatial distribution of permeability at the scale of individual basalt flows. Geostatistical analysis of hydrologic data from 540 wells illustrates that CRBG reservoirs are reasonably modeled as layered heterogeneous systems on the basis of basalt flow morphology; however, the regional dataset is insufficient to constrain permeability variability at the scale of an individual basalt flow. As a result, permeability distribution for this modeling study is established by centering the lognormal permeability distribution in the regional dataset over the bulk permeability measured at Wallula site, which results in a spatially random permeability distribution within the target reservoir. In order to quantify the effects of this permeability uncertainty, CO2 injections are simulated within 50 equally probable synthetic reservoir domains. Each model domain comprises three-dimensional geometry with 530,000 grid blocks, and fracture-matrix interaction is simulated as interacting continua for the two low permeability layers (flow interiors) bounding the injection zone. Results from this research illustrate that permeability uncertainty at the scale of individual basalt flows may significantly impact both injection pressure accumulation and CO2 distribution.

Evaluation of the spatial variability of soil water content at the spatial resolution of SMAP data products : case studies in Italy and Morocco

NASA Astrophysics Data System (ADS)

Menenti, Massimo; Akdim, Nadia; Alfieri, Silvia Maria; Labbassi, Kamal; De Lorenzi, Francesca; Bonfante, Antonello; Basile, Angelo

2014-05-01

Frequent and contiguous observations of soil water content such as the ones to be provided by SMAP are potentially useful to improve distributed models of soil water balance. This requires matching of observations and model estimates provided both sample spatial patterns consistently. The spatial resolution of SMAP soil water content data products ranges from 3 km X 3 km to 40 km X 40 km. Even the highest spatial resolution may not be sufficient to capture the spatial variability due to terrain, soil properties and precipitation. We have evaluated the SMAP spatial resolution against spatial variability of soil water content in two Mediterranean landscapes: a hilly area dominated by vineyards and olive orchards in Central Italy and a large irrigation schemes (Doukkala) in Morocco. The "Valle Telesina" is a 20,000 ha complex landscape located in South Italy in the Campania region, which has a complex geology and geomorphology and it is characterised by an E-W elongated graben where the Calore river flows. The main crops are grapevine (6,448 ha) and olive (3,390 ha). Soil information was mainly derived from an existing soil map at 1:50 000 scale (Terribile et al., 1996). The area includes 47 SMUs (Soil Mapping Units) and about 60 soil typological units (STUs). (Bonfante et al., 2011). In Doukkala, the soil water retention and unsaturated capillary conductivity were estimated from grain size distribution of a number of samples (22 pilot points, each one sampled in 3 horizons of 20cm), and combined with a soil map. The land use classification was carried out using a NDVI time series at high spatial resolution (Landsat TM and SPOT HRV). We have calculated soil water content for each soil unit in each area in response to several climate cases generating daily maps of soil water content at different depths. To reproduce spatial sampling by SMAP we have filtered these spatial patterns by calculating box averages with grid sizes of 1 km X 1 km and 5 km X 5 km. We have repeated this procedure for soil water content in the 0 to 5 cm and 0 to 10 cm depths. For each case we have compared the variance of filtered soil water content with the expected accuracy of SMAP soil water content. The two areas are very different as regards morphology and soil formation. The Valle Telesina is characterized by a very significant variability of soil hydrological properties leading to complex patterns in soil water content. Contrariwise, the soil properties estimated for all soil mapping units in the Dhoukkala collapse into just two pairs of water retention and hydraulic conductivity characteristics, leading to smoother patterns of soil water content.

Morphological and Phytochemical Diversity among Hypericum Species of the Mediterranean Basin

PubMed Central

Nürk, Nicolai M.; Crockett, Sara L.

2012-01-01

The genus Hypericum L. (St. John’s wort, Hypericaceae) includes more than 450 species that occur in temperature or tropical mountain regions of the world. Monographic work on the genus has resulted in the recognition and description of 36 taxonomic sections, delineated by specific combinations of morphological characteristics and biogeographic distribution. The Mediterranean Basin has been recognized as a hot spot of diversity for the genus Hypericum, and as such is a region in which many endemic species occur. Species belonging to sections distributed in this area of the world display considerable morphological and phytochemical diversity. Results of a cladistic analysis, based on 89 morphological characters that were considered phylogenetically informative, are given here. In addition, a brief overview of morphological characteristics and the distribution of pharmaceutically relevant secondary metabolites for species native to this region of the world are presented. PMID:22662020

Estimating planktonic diversity through spatial dominance patterns in a model ocean.

PubMed

Soccodato, Alice; d'Ovidio, Francesco; Lévy, Marina; Jahn, Oliver; Follows, Michael J; De Monte, Silvia

2016-10-01

In the open ocean, the observation and quantification of biodiversity patterns is challenging. Marine ecosystems are indeed largely composed by microbial planktonic communities whose niches are affected by highly dynamical physico-chemical conditions, and whose observation requires advanced methods for morphological and molecular classification. Optical remote sensing offers an appealing complement to these in-situ techniques. Global-scale coverage at high spatiotemporal resolution is however achieved at the cost of restrained information on the local assemblage. Here, we use a coupled physical and ecological model ocean simulation to explore one possible metrics for comparing measures performed on such different scales. We show that a large part of the local diversity of the virtual plankton ecosystem - corresponding to what accessible by genomic methods - can be inferred from crude, but spatially extended, information - as conveyed by remote sensing. Shannon diversity of the local community is indeed highly correlated to a 'seascape' index, which quantifies the surrounding spatial heterogeneity of the most abundant functional group. The error implied in drastically reducing the resolution of the plankton community is shown to be smaller in frontal regions as well as in regions of intermediate turbulent energy. On the spatial scale of hundreds of kms, patterns of virtual plankton diversity are thus largely sustained by mixing communities that occupy adjacent niches. We provide a proof of principle that in the open ocean information on spatial variability of communities can compensate for limited local knowledge, suggesting the possibility of integrating in-situ and satellite observations to monitor biodiversity distribution at the global scale. Copyright © 2016 Elsevier B.V. All rights reserved.