Wave and setup dynamics on steeply-sloping reefs with large bottom roughness

NASA Astrophysics Data System (ADS)

Buckley, M. L.; Hansen, J.; Lowe, R.

2016-12-01

High-resolution observations from a wave flume were used to investigate the dynamics of wave setup over a steeply-sloping fringing reef profile with the effect of bottom roughness modeled using roughness elements scaled to mimic a coral reef. Results with roughness were compared with smooth bottom runs across sixteen offshore wave and still water level conditions. The time-averaged and depth-integrated force balance was evaluated from observations collected at seventeen locations across the flume, which was found to consist of cross-shore pressure and radiation stress gradients whose sum was balanced by mean quadratic bottom stresses. We found that when radiation stress gradients were calculated from observations of the radiation stress derived from linear wave theory, both wave setdown and setup were under predicted for the majority of wave and water level conditions tested. Inaccuracies in the predicted setdown and setup were improved by including a wave roller model, which provides a correction to the kinetic energy predicted by linear wave theory for breaking waves and produces a spatial delay in the wave forcing that was consistent with the observations. The introduction of roughness had two primary effects. First, the amount of wave energy dissipated during wave breaking was reduced due to frictional wave dissipation that occurred on the reef slope offshore of the breakpoint. Second, offshore directed mean bottom stresses were generated by the interaction of the combined wave-current velocity field with the roughness elements. These two mechanisms acted counter to one another. As a result, setup on the reef flat was comparable (7% mean difference) between corresponding rough and smooth runs. These findings are used to assess prior results from numerical modelling studies of reefs, and also to discuss the broader implications for how steep slopes and large roughness influences setup dynamics for general nearshore systems.

ENKI - An Open Source environmental modelling platfom

NASA Astrophysics Data System (ADS)

Kolberg, S.; Bruland, O.

2012-04-01

The ENKI software framework for implementing spatio-temporal models is now released under the LGPL license. Originally developed for evaluation and comparison of distributed hydrological model compositions, ENKI can be used for simulating any time-evolving process over a spatial domain. The core approach is to connect a set of user specified subroutines into a complete simulation model, and provide all administrative services needed to calibrate and run that model. This includes functionality for geographical region setup, all file I/O, calibration and uncertainty estimation etc. The approach makes it easy for students, researchers and other model developers to implement, exchange, and test single routines and various model compositions in a fixed framework. The open-source license and modular design of ENKI will also facilitate rapid dissemination of new methods to institutions engaged in operational water resource management. ENKI uses a plug-in structure to invoke separately compiled subroutines, separately built as dynamic-link libraries (dlls). The source code of an ENKI routine is highly compact, with a narrow framework-routine interface allowing the main program to recognise the number, types, and names of the routine's variables. The framework then exposes these variables to the user within the proper context, ensuring that distributed maps coincide spatially, time series exist for input variables, states are initialised, GIS data sets exist for static map data, manually or automatically calibrated values for parameters etc. By using function calls and memory data structures to invoke routines and facilitate information flow, ENKI provides good performance. For a typical distributed hydrological model setup in a spatial domain of 25000 grid cells, 3-4 time steps simulated per second should be expected. Future adaptation to parallel processing may further increase this speed. New modifications to ENKI include a full separation of API and user interface, making it possible to run ENKI from GIS programs and other software environments. ENKI currently compiles under Windows and Visual Studio only, but ambitions exist to remove the platform and compiler dependencies.

Coevolution of Vertex Weights Resolves Social Dilemma in Spatial Networks.

PubMed

Shen, Chen; Chu, Chen; Guo, Hao; Shi, Lei; Duan, Jiangyan

2017-11-09

In realistic social system, the role or influence of each individual varies and adaptively changes in time in the population. Inspired by this fact, we thus consider a new coevolution setup of game strategy and vertex weight on a square lattice. In detail, we model the structured population on a square lattice, on which the role or influence of each individual is depicted by vertex weight, and the prisoner's dilemma game has been applied to describe the social dilemma of pairwise interactions of players. Through numerical simulation, we conclude that our coevolution setup can promote the evolution of cooperation effectively. Especially, there exists a moderate value of δ for each ε that can warrant an optimal resolution of social dilemma. For a further understanding of these results, we find that intermediate value of δ enables the strongest heterogeneous distribution of vertex weight. We hope our coevolution setup of vertex weight will provide new insight for the future research.

A versatile setup using femtosecond adaptive spectroscopic techniques for coherent anti-Stokes Raman scattering

DOE Office of Scientific and Technical Information (OSTI.GOV)

Shen, Yujie, E-mail: styojm@physics.tamu.edu; Voronine, Dmitri V.; Sokolov, Alexei V.

2015-08-15

We report a versatile setup based on the femtosecond adaptive spectroscopic techniques for coherent anti-Stokes Raman scattering. The setup uses a femtosecond Ti:Sapphire oscillator source and a folded 4f pulse shaper, in which the pulse shaping is carried out through conventional optical elements and does not require a spatial light modulator. Our setup is simple in alignment, and can be easily switched between the collinear single-beam and the noncollinear two-beam configurations. We demonstrate the capability for investigating both transparent and highly scattering samples by detecting transmitted and reflected signals, respectively.

Comparison of different statistical modelling approaches for deriving spatial air temperature patterns in an urban environment

NASA Astrophysics Data System (ADS)

Straub, Annette; Beck, Christoph; Breitner, Susanne; Cyrys, Josef; Geruschkat, Uta; Jacobeit, Jucundus; Kühlbach, Benjamin; Kusch, Thomas; Richter, Katja; Schneider, Alexandra; Umminger, Robin; Wolf, Kathrin

2017-04-01

Frequently spatial variations of air temperature of considerable magnitude occur within urban areas. They correspond to varying land use/land cover characteristics and vary with season, time of day and synoptic conditions. These temperature differences have an impact on human health and comfort directly by inducing thermal stress as well as indirectly by means of affecting air quality. Therefore, knowledge of the spatial patterns of air temperature in cities and the factors causing them is of great importance, e.g. for urban planners. A multitude of studies have shown statistical modelling to be a suitable tool for generating spatial air temperature patterns. This contribution presents a comparison of different statistical modelling approaches for deriving spatial air temperature patterns in the urban environment of Augsburg, Southern Germany. In Augsburg there exists a measurement network for air temperature and humidity currently comprising 48 stations in the city and its rural surroundings (corporately operated by the Institute of Epidemiology II, Helmholtz Zentrum München, German Research Center for Environmental Health and the Institute of Geography, University of Augsburg). Using different datasets for land surface characteristics (Open Street Map, Urban Atlas) area percentages of different types of land cover were calculated for quadratic buffer zones of different size (25, 50, 100, 250, 500 m) around the stations as well for source regions of advective air flow and used as predictors together with additional variables such as sky view factor, ground level and distance from the city centre. Multiple Linear Regression and Random Forest models for different situations taking into account season, time of day and weather condition were applied utilizing selected subsets of these predictors in order to model spatial distributions of mean hourly and daily air temperature deviations from a rural reference station. Furthermore, the different model setups were evaluated and the relative importance of individual predictors was examined via averaging over orderings (for MLR) and permutation importance (for RF) respectively. The results indicate that MLR is superior to RF with mean squared skill scores reaching up to 0.85 and R2 in leave-one-out cross validation up to 65% for individual situations and setups. The best performing models are obtained for situations with low to medium wind velocities before sunrise and after sunset. Important predictor variables for these situations are percentage of built-up area, sky view factor, and distance from the city centre.

Magnetoacoustic Tomography with Magnetic Induction (MAT-MI) for Breast Tumor Imaging: Numerical Modeling and Simulation

PubMed Central

Zhou, Lian; Li, Xu; Zhu, Shanan; He, Bin

2011-01-01

Magnetoacoustic tomography with magnetic induction (MAT-MI) was recently introduced as a noninvasive electrical conductivity imaging approach with high spatial resolution close to ultrasound imaging. In the present study, we test the feasibility of the MAT-MI method for breast tumor imaging using numerical modeling and computer simulation. Using the finite element method, we have built three dimensional numerical breast models with varieties of embedded tumors for this simulation study. In order to obtain an accurate and stable forward solution that does not have numerical errors caused by singular MAT-MI acoustic sources at conductivity boundaries, we first derive an integral forward method for calculating MAT-MI acoustic sources over the entire imaging volume. An inverse algorithm for reconstructing the MAT-MI acoustic source is also derived with spherical measurement aperture, which simulates a practical setup for breast imaging. With the numerical breast models, we have conducted computer simulations under different imaging parameter setups and all the results suggest that breast tumors that have large conductivity contrast to its surrounding tissues as reported in literature may be readily detected in the reconstructed MAT-MI images. In addition, our simulations also suggest that the sensitivity of imaging breast tumors using the presented MAT-MI setup depends more on the tumor location and the conductivity contrast between the tumor and its surrounding tissues than on the tumor size. PMID:21364262

Multimodal optical setup based on spectrometer and cameras combination for biological tissue characterization with spatially modulated illumination

NASA Astrophysics Data System (ADS)

Baruch, Daniel; Abookasis, David

2017-04-01

The application of optical techniques as tools for biomedical research has generated substantial interest for the ability of such methodologies to simultaneously measure biochemical and morphological parameters of tissue. Ongoing optimization of optical techniques may introduce such tools as alternative or complementary to conventional methodologies. The common approach shared by current optical techniques lies in the independent acquisition of tissue's optical properties (i.e., absorption and reduced scattering coefficients) from reflected or transmitted light. Such optical parameters, in turn, provide detailed information regarding both the concentrations of clinically relevant chromophores and macroscopic structural variations in tissue. We couple a noncontact optical setup with a simple analysis algorithm to obtain absorption and scattering coefficients of biological samples under test. Technically, a portable picoprojector projects serial sinusoidal patterns at low and high spatial frequencies, while a spectrometer and two independent CCD cameras simultaneously acquire the reflected diffuse light through a single spectrometer and two separate CCD cameras having different bandpass filters at nonisosbestic and isosbestic wavelengths in front of each. This configuration fills the gaps in each other's capabilities for acquiring optical properties of tissue at high spectral and spatial resolution. Experiments were performed on both tissue-mimicking phantoms as well as hands of healthy human volunteers to quantify their optical properties as proof of concept for the present technique. In a separate experiment, we derived the optical properties of the hand skin from the measured diffuse reflectance, based on a recently developed camera model. Additionally, oxygen saturation levels of tissue measured by the system were found to agree well with reference values. Taken together, the present results demonstrate the potential of this integrated setup for diagnostic and research applications.

A method for determining average beach slope and beach slope variability for U.S. sandy coastlines

USGS Publications Warehouse

Doran, Kara S.; Long, Joseph W.; Overbeck, Jacquelyn R.

2015-01-01

The U.S. Geological Survey (USGS) National Assessment of Hurricane-Induced Coastal Erosion Hazards compares measurements of beach morphology with storm-induced total water levels to produce forecasts of coastal change for storms impacting the Gulf of Mexico and Atlantic coastlines of the United States. The wave-induced water level component (wave setup and swash) is estimated by using modeled offshore wave height and period and measured beach slope (from dune toe to shoreline) through the empirical parameterization of Stockdon and others (2006). Spatial and temporal variability in beach slope leads to corresponding variability in predicted wave setup and swash. For instance, seasonal and storm-induced changes in beach slope can lead to differences on the order of 1 meter (m) in wave-induced water level elevation, making accurate specification of this parameter and its associated uncertainty essential to skillful forecasts of coastal change. A method for calculating spatially and temporally averaged beach slopes is presented here along with a method for determining total uncertainty for each 200-m alongshore section of coastline.

Mobility, fitness collection, and the breakdown of cooperation

NASA Astrophysics Data System (ADS)

Gelimson, Anatolij; Cremer, Jonas; Frey, Erwin

2013-04-01

The spatial arrangement of individuals is thought to overcome the dilemma of cooperation: When cooperators engage in clusters, they might share the benefit of cooperation while being more protected against noncooperating individuals, who benefit from cooperation but save the cost of cooperation. This is paradigmatically shown by the spatial prisoner's dilemma model. Here, we study this model in one and two spatial dimensions, but explicitly take into account that in biological setups, fitness collection and selection are separated processes occurring mostly on vastly different time scales. This separation is particularly important to understand the impact of mobility on the evolution of cooperation. We find that even small diffusive mobility strongly restricts cooperation since it enables noncooperative individuals to invade cooperative clusters. Thus, in most biological scenarios, where the mobility of competing individuals is an irrefutable fact, the spatial prisoner's dilemma alone cannot explain stable cooperation, but additional mechanisms are necessary for spatial structure to promote the evolution of cooperation. The breakdown of cooperation is analyzed in detail. We confirm the existence of a phase transition, here controlled by mobility and costs, which distinguishes between purely cooperative and noncooperative absorbing states. While in one dimension the model is in the class of the voter model, it belongs to the directed percolation universality class in two dimensions.

Auralization of vibroacoustic models in engineering using Wave Field Synthesis: Application to plates and transmission loss

NASA Astrophysics Data System (ADS)

Bolduc, A.; Gauthier, P.-A.; Berry, A.

2017-12-01

While perceptual evaluation and sound quality testing with jury are now recognized as essential parts of acoustical product development, they are rarely implemented with spatial sound field reproduction. Instead, monophonic, stereophonic or binaural presentations are used. This paper investigates the workability and interest of a method to use complete vibroacoustic engineering models for auralization based on 2.5D Wave Field Synthesis (WFS). This method is proposed in order that spatial characteristics such as directivity patterns and direction-of-arrival are part of the reproduced sound field while preserving the model complete formulation that coherently combines frequency and spatial responses. Modifications to the standard 2.5D WFS operators are proposed for extended primary sources, affecting the reference line definition and compensating for out-of-plane elementary primary sources. Reported simulations and experiments of reproductions of two physically-accurate vibroacoustic models of thin plates show that the proposed method allows for an effective reproduction in the horizontal plane: Spatial and frequency domains features are recreated. Application of the method to the sound rendering of a virtual transmission loss measurement setup shows the potential of the method for use in virtual acoustical prototyping for jury testing.

A space-time multiscale modelling of Earth's gravity field variations

NASA Astrophysics Data System (ADS)

Wang, Shuo; Panet, Isabelle; Ramillien, Guillaume; Guilloux, Frédéric

2017-04-01

The mass distribution within the Earth varies over a wide range of spatial and temporal scales, generating variations in the Earth's gravity field in space and time. These variations are monitored by satellites as the GRACE mission, with a 400 km spatial resolution and 10 days to 1 month temporal resolution. They are expressed in the form of gravity field models, often with a fixed spatial or temporal resolution. The analysis of these models allows us to study the mass transfers within the Earth system. Here, we have developed space-time multi-scale models of the gravity field, in order to optimize the estimation of gravity signals resulting from local processes at different spatial and temporal scales, and to adapt the time resolution of the model to its spatial resolution according to the satellites sampling. For that, we first build a 4D wavelet family combining spatial Poisson wavelets with temporal Haar wavelets. Then, we set-up a regularized inversion of inter-satellites gravity potential differences in a bayesian framework, to estimate the model parameters. To build the prior, we develop a spectral analysis, localized in time and space, of geophysical models of mass transport and associated gravity variations. Finally, we test our approach to the reconstruction of space-time variations of the gravity field due to hydrology. We first consider a global distribution of observations along the orbit, from a simplified synthetic hydrology signal comprising only annual variations at large spatial scales. Then, we consider a regional distribution of observations in Africa, and a larger number of spatial and temporal scales. We test the influence of an imperfect prior and discuss our results.

Super-resolution with an SLM and two intensity images

NASA Astrophysics Data System (ADS)

Alcalá Ochoa, Noé; de León, Y. Ponce

2018-06-01

It is reported a method which may simplify the optical setups used to achieve super-resolution through the amplitude multiplication of two waves. For this end we decompose a super-resolving pupil into two complex masks and with the aid of a Spatial Light Modulator (LCoS) we obtain two intensity images that are subtracted. With this proposal, the traditional experimental optical setups are considerably simplified, with the additional benefit that different masks can be utilized without needing to perform the setup alignment each time.

Evaluation of wave runup predictions from numerical and parametric models

USGS Publications Warehouse

Stockdon, Hilary F.; Thompson, David M.; Plant, Nathaniel G.; Long, Joseph W.

2014-01-01

Wave runup during storms is a primary driver of coastal evolution, including shoreline and dune erosion and barrier island overwash. Runup and its components, setup and swash, can be predicted from a parameterized model that was developed by comparing runup observations to offshore wave height, wave period, and local beach slope. Because observations during extreme storms are often unavailable, a numerical model is used to simulate the storm-driven runup to compare to the parameterized model and then develop an approach to improve the accuracy of the parameterization. Numerically simulated and parameterized runup were compared to observations to evaluate model accuracies. The analysis demonstrated that setup was accurately predicted by both the parameterized model and numerical simulations. Infragravity swash heights were most accurately predicted by the parameterized model. The numerical model suffered from bias and gain errors that depended on whether a one-dimensional or two-dimensional spatial domain was used. Nonetheless, all of the predictions were significantly correlated to the observations, implying that the systematic errors can be corrected. The numerical simulations did not resolve the incident-band swash motions, as expected, and the parameterized model performed best at predicting incident-band swash heights. An assimilated prediction using a weighted average of the parameterized model and the numerical simulations resulted in a reduction in prediction error variance. Finally, the numerical simulations were extended to include storm conditions that have not been previously observed. These results indicated that the parameterized predictions of setup may need modification for extreme conditions; numerical simulations can be used to extend the validity of the parameterized predictions of infragravity swash; and numerical simulations systematically underpredict incident swash, which is relatively unimportant under extreme conditions.

Automatized set-up procedure for transcranial magnetic stimulation protocols.

PubMed

Harquel, S; Diard, J; Raffin, E; Passera, B; Dall'Igna, G; Marendaz, C; David, O; Chauvin, A

2017-06-01

Transcranial Magnetic Stimulation (TMS) established itself as a powerful technique for probing and treating the human brain. Major technological evolutions, such as neuronavigation and robotized systems, have continuously increased the spatial reliability and reproducibility of TMS, by minimizing the influence of human and experimental factors. However, there is still a lack of efficient set-up procedure, which prevents the automation of TMS protocols. For example, the set-up procedure for defining the stimulation intensity specific to each subject is classically done manually by experienced practitioners, by assessing the motor cortical excitability level over the motor hotspot (HS) of a targeted muscle. This is time-consuming and introduces experimental variability. Therefore, we developed a probabilistic Bayesian model (AutoHS) that automatically identifies the HS position. Using virtual and real experiments, we compared the efficacy of the manual and automated procedures. AutoHS appeared to be more reproducible, faster, and at least as reliable as classical manual procedures. By combining AutoHS with robotized TMS and automated motor threshold estimation methods, our approach constitutes the first fully automated set-up procedure for TMS protocols. The use of this procedure decreases inter-experimenter variability while facilitating the handling of TMS protocols used for research and clinical routine. Copyright © 2017 Elsevier Inc. All rights reserved.

Absolute shape measurements using high-resolution optoelectronic holography methods

NASA Astrophysics Data System (ADS)

Furlong, Cosme; Pryputniewicz, Ryszard J.

2000-01-01

Characterization of surface shape and deformation is of primary importance in a number of testing and metrology applications related to the functionality, performance, and integrity of components. In this paper, a unique, compact, and versatile state-of-the-art fiber-optic-based optoelectronic holography (OEH) methodology is described. This description addresses apparatus and analysis algorithms, especially developed to perform measurements of both absolute surface shape and deformation. The OEH can be arranged in multiple configurations, which include the three-camera, three-illumination, and in-plane speckle correlation setups. With the OEH apparatus and analysis algorithms, absolute shape measurements can be made, using present setup, with a spatial resolution and accuracy of better than 30 and 10 micrometers , respectively, for volumes characterized by a 300-mm length. Optimizing the experimental setup and incorporating equipment, as it becomes available, having superior capabilities to the ones utilized in the present investigations can further increase resolution and accuracy in the measurements. The particular feature of this methodology is its capability to export the measurements data directly into CAD environments for subsequent processing, analysis, and definition of CAD/CAE models.

Fast Magnetotail Reconnection: Challenge to Global MHD Modeling

NASA Astrophysics Data System (ADS)

Kuznetsova, M. M.; Hesse, M.; Rastaetter, L.; Toth, G.; de Zeeuw, D.; Gombosi, T.

2005-05-01

Representation of fast magnetotail reconnection rates during substorm onset is one of the major challenges to global MHD modeling. Our previous comparative study of collisionless magnetic reconnection in GEM Challenge geometry demonstrated that the reconnection rate is controlled by ion nongyrotropic behavior near the reconnection site and that it can be described in terms of nongyrotropic corrections to the magnetic induction equation. To further test the approach we performed MHD simulations with nongyrotropic corrections of forced reconnection for the Newton Challenge setup. As a next step we employ the global MHD code BATSRUS and test different methods to model fast magnetotail reconnection rates by introducing non-ideal corrections to the induction equation in terms of nongyrotropic corrections, spatially localized resistivity, or current dependent resistivity. The BATSRUS adaptive grid structure allows to perform global simulations with spatial resolution near the reconnection site comparable with spatial resolution of local MHD simulations for the Newton Challenge. We select solar wind conditions which drive the accumulation of magnetic field in the tail lobes and subsequent magnetic reconnection and energy release. Testing the ability of global MHD models to describe magnetotail evolution during substroms is one of the elements of science based validation efforts at the Community Coordinated Modeling Center.

Pairwise graphical models for structural health monitoring with dense sensor arrays

NASA Astrophysics Data System (ADS)

Mohammadi Ghazi, Reza; Chen, Justin G.; Büyüköztürk, Oral

2017-09-01

Through advances in sensor technology and development of camera-based measurement techniques, it has become affordable to obtain high spatial resolution data from structures. Although measured datasets become more informative by increasing the number of sensors, the spatial dependencies between sensor data are increased at the same time. Therefore, appropriate data analysis techniques are needed to handle the inference problem in presence of these dependencies. In this paper, we propose a novel approach that uses graphical models (GM) for considering the spatial dependencies between sensor measurements in dense sensor networks or arrays to improve damage localization accuracy in structural health monitoring (SHM) application. Because there are always unobserved damaged states in this application, the available information is insufficient for learning the GMs. To overcome this challenge, we propose an approximated model that uses the mutual information between sensor measurements to learn the GMs. The study is backed by experimental validation of the method on two test structures. The first is a three-story two-bay steel model structure that is instrumented by MEMS accelerometers. The second experimental setup consists of a plate structure and a video camera to measure the displacement field of the plate. Our results show that considering the spatial dependencies by the proposed algorithm can significantly improve damage localization accuracy.

Modeled and monitored variation in space and time of PCB-153 concentrations in air, sediment, soil and aquatic biota on a European scale.

PubMed

Hauck, Mara; Huijbregts, Mark A J; Hollander, Anne; Hendriks, A Jan; van de Meent, Dik

2010-08-15

We evaluated various modeling options for estimating concentrations of PCB-153 in the environment and in biota across Europe, using a nested multimedia fate model coupled with a bioaccumulation model. The most detailed model set up estimates concentrations in air, soil, fresh water sediment and fresh water biota with spatially explicit environmental characteristics and spatially explicit emissions to air and water in the period 1930-2005. Model performance was evaluated with the root mean square error (RMSE(log)), based on the difference between estimated and measured concentrations. The RMSE(log) was 5.4 for air, 5.6-6.3 for sediment and biota, and 5.5 for soil in the most detailed model scenario. Generally, model estimations tended to underestimate observed values for all compartments, except air. The decline in observed concentrations was also slightly underestimated by the model for the period where measurements were available (1989-2002). Applying a generic model setup with averaged emissions and averaged environmental characteristics, the RMSE(log) increased to 21 for air and 49 for sediment. For soil the RMSE(log) decreased to 3.5. We found that including spatial variation in emissions was most relevant for all compartments, except soil, while including spatial variation in environmental characteristics was less influential. For improving predictions of concentrations in sediment and aquatic biota, including emissions to water was found to be relevant as well. Copyright 2009 Elsevier B.V. All rights reserved.

Modelling rapid subsurface flow at the hillslope scale with explicit representation of preferential flow paths

NASA Astrophysics Data System (ADS)

Wienhöfer, J.; Zehe, E.

2012-04-01

Rapid lateral flow processes via preferential flow paths are widely accepted to play a key role for rainfall-runoff response in temperate humid headwater catchments. A quantitative description of these processes, however, is still a major challenge in hydrological research, not least because detailed information about the architecture of subsurface flow paths are often impossible to obtain at a natural site without disturbing the system. Our study combines physically based modelling and field observations with the objective to better understand how flow network configurations influence the hydrological response of hillslopes. The system under investigation is a forested hillslope with a small perennial spring at the study area Heumöser, a headwater catchment of the Dornbirnerach in Vorarlberg, Austria. In-situ points measurements of field-saturated hydraulic conductivity and dye staining experiments at the plot scale revealed that shrinkage cracks and biogenic macropores function as preferential flow paths in the fine-textured soils of the study area, and these preferential flow structures were active in fast subsurface transport of artificial tracers at the hillslope scale. For modelling of water and solute transport, we followed the approach of implementing preferential flow paths as spatially explicit structures of high hydraulic conductivity and low retention within the 2D process-based model CATFLOW. Many potential configurations of the flow path network were generated as realisations of a stochastic process informed by macropore characteristics derived from the plot scale observations. Together with different realisations of soil hydraulic parameters, this approach results in a Monte Carlo study. The model setups were used for short-term simulation of a sprinkling and tracer experiment, and the results were evaluated against measured discharges and tracer breakthrough curves. Although both criteria were taken for model evaluation, still several model setups produced acceptable matches to the observed behaviour. These setups were selected for long-term simulation, the results of which were compared against water level measurements at two piezometers along the hillslope and the integral discharge response of the spring to reject some non-behavioural model setups and further reduce equifinality. The results of this study indicate that process-based modelling can provide a means to distinguish preferential flow networks on the hillslope scale when complementary measurements to constrain the range of behavioural model setups are available. These models can further be employed as a virtual reality to investigate the characteristics of flow path architectures and explore effective parameterisations for larger scale applications.

High visual acuity revealed in dogs

PubMed Central

Lind, Olle; Milton, Ida; Andersson, Elin; Jensen, Per

2017-01-01

Humans have selectively bred and used dogs over a period of thousands of years, and more recently the dog has become an important model animal for studies in ethology, cognition and genetics. These broad interests warrant careful descriptions of the senses of dogs. Still there is little known about dog vision, especially what dogs can discriminate in different light conditions. We trained and tested whippets, pugs, and a Shetland sheepdog in a two-choice discrimination set-up and show that dogs can discriminate patterns with spatial frequencies between 5.5 and 19.5 cycle per degree (cpd) in the bright light condition (43 cd m-2). This is a higher spatial resolution than has been previously reported although the individual variation in our tests was large. Humans tested in the same set-up reached acuities corresponding to earlier studies, ranging between 32.1 and 44.2 cpd. In the dim light condition (0.0087 cd m-2) the acuity of dogs ranged between 1.8 and 3.5 cpd while in humans, between 5.9 and 9.9 cpd. Thus, humans make visual discrimination of objects from roughly a threefold distance compared to dogs in both bright and dim light. PMID:29206864

High visual acuity revealed in dogs.

PubMed

Lind, Olle; Milton, Ida; Andersson, Elin; Jensen, Per; Roth, Lina S V

2017-01-01

Humans have selectively bred and used dogs over a period of thousands of years, and more recently the dog has become an important model animal for studies in ethology, cognition and genetics. These broad interests warrant careful descriptions of the senses of dogs. Still there is little known about dog vision, especially what dogs can discriminate in different light conditions. We trained and tested whippets, pugs, and a Shetland sheepdog in a two-choice discrimination set-up and show that dogs can discriminate patterns with spatial frequencies between 5.5 and 19.5 cycle per degree (cpd) in the bright light condition (43 cd m-2). This is a higher spatial resolution than has been previously reported although the individual variation in our tests was large. Humans tested in the same set-up reached acuities corresponding to earlier studies, ranging between 32.1 and 44.2 cpd. In the dim light condition (0.0087 cd m-2) the acuity of dogs ranged between 1.8 and 3.5 cpd while in humans, between 5.9 and 9.9 cpd. Thus, humans make visual discrimination of objects from roughly a threefold distance compared to dogs in both bright and dim light.

Brillouin Optical Correlation Domain Analysis in Composite Material Beams

PubMed Central

Stern, Yonatan; London, Yosef; Preter, Eyal; Antman, Yair; Diamandi, Hilel Hagai; Silbiger, Maayan; Adler, Gadi; Shalev, Doron; Zadok, Avi

2017-01-01

Structural health monitoring is a critical requirement in many composites. Numerous monitoring strategies rely on measurements of temperature or strain (or both), however these are often restricted to point-sensing or to the coverage of small areas. Spatially-continuous data can be obtained with optical fiber sensors. In this work, we report high-resolution distributed Brillouin sensing over standard fibers that are embedded in composite structures. A phase-coded, Brillouin optical correlation domain analysis (B-OCDA) protocol was employed, with spatial resolution of 2 cm and sensitivity of 1 °K or 20 micro-strain. A portable measurement setup was designed and assembled on the premises of a composite structures manufacturer. The setup was successfully utilized in several structural health monitoring scenarios: (a) monitoring the production and curing of a composite beam over 60 h; (b) estimating the stiffness and Young’s modulus of a composite beam; and (c) distributed strain measurements across the surfaces of a model wing of an unmanned aerial vehicle. The measurements are supported by the predictions of structural analysis calculations. The results illustrate the potential added values of high-resolution, distributed Brillouin sensing in the structural health monitoring of composites. PMID:28974041

Brillouin Optical Correlation Domain Analysis in Composite Material Beams.

PubMed

Stern, Yonatan; London, Yosef; Preter, Eyal; Antman, Yair; Diamandi, Hilel Hagai; Silbiger, Maayan; Adler, Gadi; Levenberg, Eyal; Shalev, Doron; Zadok, Avi

2017-10-02

Structural health monitoring is a critical requirement in many composites. Numerous monitoring strategies rely on measurements of temperature or strain (or both), however these are often restricted to point-sensing or to the coverage of small areas. Spatially-continuous data can be obtained with optical fiber sensors. In this work, we report high-resolution distributed Brillouin sensing over standard fibers that are embedded in composite structures. A phase-coded, Brillouin optical correlation domain analysis (B-OCDA) protocol was employed, with spatial resolution of 2 cm and sensitivity of 1 °K or 20 micro-strain. A portable measurement setup was designed and assembled on the premises of a composite structures manufacturer. The setup was successfully utilized in several structural health monitoring scenarios: (a) monitoring the production and curing of a composite beam over 60 h; (b) estimating the stiffness and Young's modulus of a composite beam; and (c) distributed strain measurements across the surfaces of a model wing of an unmanned aerial vehicle. The measurements are supported by the predictions of structural analysis calculations. The results illustrate the potential added values of high-resolution, distributed Brillouin sensing in the structural health monitoring of composites.

Performance of velocity vector estimation using an improved dynamic beamforming setup

NASA Astrophysics Data System (ADS)

Munk, Peter; Jensen, Joergen A.

2001-05-01

Estimation of velocity vectors using transverse spatial modulation has previously been presented. Initially, the velocity estimation was improved using an approximated dynamic beamformer setup instead of a static combined with a new velocity estimation scheme. A new beamformer setup for dynamic control of the acoustic field, based on the Pulsed Plane Wave Decomposition (PPWD), is presented. The PPWD gives an unambiguous relation between a given acoustic field and the time functions needed on an array transducer for transmission. Applying this method for the receive beamformation results in a setup of the beamformer with different filters for each channel for each estimation depth. The method of the PPWD is illustrated by analytical expressions of the decomposed acoustic field and these results are used for simulation. Results of velocity estimates using the new setup are given on the basis of simulated and experimental data. The simulation setup is an attempt to approximate the situation present when performing a scanning of the carotid artery with a linear array. Measurement of the flow perpendicular to the emission direction is possible using the approach of transverse spatial modulation. This is most often the case in a scanning of the carotid artery, where the situation is handled by an angled Doppler setup in the present ultrasound scanners. The modulation period of 2 mm is controlled for a range of 20-40 mm which covers the typical range of the carotid artery. A 6 MHz array on a 128-channel system is simulated. The flow setup in the simulation is based on a vessel with a parabolic flow profile for a 60 and 90-degree flow angle. The experimental results are based on the backscattered signal from a sponge mounted in a stepping device. The bias and std. Dev. Of the velocity estimate are calculated for four different flow angles (50,60,75 and 90 degrees). The velocity vector is calculated using the improved 2D estimation approach at a range of depths.

Implementation of AN Agricultural Environmental Information System (aeis) for the Sanjiang Plain, Ne-China

NASA Astrophysics Data System (ADS)

Zhao, Q.; Brocks, S.; Lenz-Wiedemann, V.; Miao, Y.; Jiang, R.; Chen, X.; Zhang, F.; Bareth, G.

2012-07-01

The Sino-German Project between the China Agricultural University and the University of Cologne, Germany, focuses on regional agro-ecosystem modelling. One major focus of the cooperation activity is the establishment of joint rice field experiment research in Jiansanjiang, located in the Sanjiang Plain (Heilongjiang Province, north-eastern part of China), to investigate the different agricultural practices and their impact on yield and environment. An additional task is to set-up an Agricultural Environmental Information System (AEIS) for the Sanjiang Plain (SJP), which covers more than 100 000 km2. Research groups from Geography (e.g. GIS & Remote Sensing) and Plant Nutrition (e.g. Precision Agriculture) are involved in the project. The major aim of the AEIS for the SJP is to provide information about (i) agriculture in the region, (ii) the impact of agricultural practices on the environment, and (iii) simulation scenarios for sustainable strategies. Consequently, the AEIS for the SJP provides information for decision support and therefore could be regarded as a Spatial Decision Support System (SDSS), too. The investigation of agricultural and environmental issues has a spatial context, which requires the management, handling, and analysis of spatial data. The use of GIS enables the capture, storage, analysis and presentation of spatial data. Therefore, GIS is the major tool for the set-up of the AEIS for the SJP. This contribution presents the results of linking agricultural statistics with GIS to provide information about agriculture in the SJP and discusses the benefits of this method as well as the integration of methods to produce new data.

Explicit validation of a surface shortwave radiation balance model over snow-covered complex terrain

NASA Astrophysics Data System (ADS)

Helbig, N.; Löwe, H.; Mayer, B.; Lehning, M.

2010-09-01

A model that computes the surface radiation balance for all sky conditions in complex terrain is presented. The spatial distribution of direct and diffuse sky radiation is determined from observations of incident global radiation, air temperature, and relative humidity at a single measurement location. Incident radiation under cloudless sky is spatially derived from a parameterization of the atmospheric transmittance. Direct and diffuse sky radiation for all sky conditions are obtained by decomposing the measured global radiation value. Spatial incident radiation values under all atmospheric conditions are computed by adjusting the spatial radiation values obtained from the parametric model with the radiation components obtained from the decomposition model at the measurement site. Topographic influences such as shading are accounted for. The radiosity approach is used to compute anisotropic terrain reflected radiation. Validations of the shortwave radiation balance model are presented in detail for a day with cloudless sky. For a day with overcast sky a first validation is presented. Validation of a section of the horizon line as well as of individual radiation components is performed with high-quality measurements. A new measurement setup was designed to determine terrain reflected radiation. There is good agreement between the measurements and the modeled terrain reflected radiation values as well as with incident radiation values. A comparison of the model with a fully three-dimensional radiative transfer Monte Carlo model is presented. That validation reveals a good agreement between modeled radiation values.

Automated quantum operations in photonic qutrits

NASA Astrophysics Data System (ADS)

Borges, G. F.; Baldijão, R. D.; Condé, J. G. L.; Cabral, J. S.; Marques, B.; Terra Cunha, M.; Cabello, A.; Pádua, S.

2018-02-01

We report an experimental implementation of automated state transformations on spatial photonic qutrits following the theoretical proposal made by Baldijão et al. [Phys. Rev. A 96, 032329 (2017), 10.1103/PhysRevA.96.032329]. A qutrit state is simulated by using three Gaussian beams, and after some state operations, the transformed state is available in the end in terms of the basis state. The state transformation setup uses a spatial light modulator and a calcite-based interferometer. The results reveal the usefulness of the operation method. The experimental data show a good agreement with theoretical predictions, opening possibilities for explorations in higher dimensions and in a wide range of applications. This is a necessary step in qualifying spatial photonic qudits as a competitive setup for experimental research in the implementation of quantum algorithms which demand a large number of steps.

State updating of a distributed hydrological model with Ensemble Kalman Filtering: effects of updating frequency and observation network density on forecast accuracy

NASA Astrophysics Data System (ADS)

Rakovec, O.; Weerts, A. H.; Hazenberg, P.; Torfs, P. J. J. F.; Uijlenhoet, R.

2012-09-01

This paper presents a study on the optimal setup for discharge assimilation within a spatially distributed hydrological model. The Ensemble Kalman filter (EnKF) is employed to update the grid-based distributed states of such an hourly spatially distributed version of the HBV-96 model. By using a physically based model for the routing, the time delay and attenuation are modelled more realistically. The discharge and states at a given time step are assumed to be dependent on the previous time step only (Markov property). Synthetic and real world experiments are carried out for the Upper Ourthe (1600 km2), a relatively quickly responding catchment in the Belgian Ardennes. We assess the impact on the forecasted discharge of (1) various sets of the spatially distributed discharge gauges and (2) the filtering frequency. The results show that the hydrological forecast at the catchment outlet is improved by assimilating interior gauges. This augmentation of the observation vector improves the forecast more than increasing the updating frequency. In terms of the model states, the EnKF procedure is found to mainly change the pdfs of the two routing model storages, even when the uncertainty in the discharge simulations is smaller than the defined observation uncertainty.

Calculation comparison of an additive and subtractive light modulator for high-resolution pixellight headlamps

NASA Astrophysics Data System (ADS)

Held, Marcel Philipp; Ley, Peer-Phillip; Lachmayer, Roland

2018-02-01

High-resolution vehicle headlamps represent a future-oriented technology that increases traffic safety and driving comfort in the dark. A further development to current matrix beam headlamps are LED-based pixellight systems which enable additional lighting functions (e.g. the projection of navigation information on the road) to be activated for given driving scenarios. The image generation is based on spatial light modulators (SLM) such as digital micromirror devices (DMD), liquid crystal displays (LCD), liquid crystal on silicon (LCoS) devices or LED arrays. For DMD-, LCD- and LCoSbased headlamps, the optical system uses illumining optics to ensure a precise illumination of the corresponding SLM. LED arrays, however, have to use imaging optics to project the LED die onto an intermediate image plane and thus create the light distribution via an apposition of gapless juxtapositional LED die images. Nevertheless, the lambertian radiation characteristics complex the design of imaging optics regarding a highefficiency setup with maximum resolution and luminous flux. Simplifying the light source model and its emitting characteristics allows to determine a balanced setup between these parameters by using the Etendue and to ´ calculate the maximum possible efficacy and luminous flux for each technology in an early designing stage. Therefore, we present a calculation comparison of how simplifying the light source model can affect the Etendue ´ conservation and the setup design for two high-resolution technologies. The shown approach is evaluated and compared to simulation models to show the occurring deviation and its applicability.

Six dimensional X-ray Tensor Tomography with a compact laboratory setup

NASA Astrophysics Data System (ADS)

Sharma, Y.; Wieczorek, M.; Schaff, F.; Seyyedi, S.; Prade, F.; Pfeiffer, F.; Lasser, T.

2016-09-01

Attenuation based X-ray micro computed tomography (XCT) provides three-dimensional images with micrometer resolution. However, there is a trade-off between the smallest size of the structures that can be resolved and the measurable sample size. In this letter, we present an imaging method using a compact laboratory setup that reveals information about micrometer-sized structures within samples that are several orders of magnitudes larger. We combine the anisotropic dark-field signal obtained in a grating interferometer and advanced tomographic reconstruction methods to reconstruct a six dimensional scattering tensor at every spatial location in three dimensions. The scattering tensor, thus obtained, encodes information about the orientation of micron-sized structures such as fibres in composite materials or dentinal tubules in human teeth. The sparse acquisition schemes presented in this letter enable the measurement of the full scattering tensor at every spatial location and can be easily incorporated in a practical, commercially feasible laboratory setup using conventional X-ray tubes, thus allowing for widespread industrial applications.

Comparison of new generation low-complexity flood inundation mapping tools with a hydrodynamic model

NASA Astrophysics Data System (ADS)

Afshari, Shahab; Tavakoly, Ahmad A.; Rajib, Mohammad Adnan; Zheng, Xing; Follum, Michael L.; Omranian, Ehsan; Fekete, Balázs M.

2018-01-01

The objective of this study is to compare two new generation low-complexity tools, AutoRoute and Height Above the Nearest Drainage (HAND), with a two-dimensional hydrodynamic model (Hydrologic Engineering Center-River Analysis System, HEC-RAS 2D). The assessment was conducted on two hydrologically different and geographically distant test-cases in the United States, including the 16,900 km2 Cedar River (CR) watershed in Iowa and a 62 km2 domain along the Black Warrior River (BWR) in Alabama. For BWR, twelve different configurations were set up for each of the models, including four different terrain setups (e.g. with and without channel bathymetry and a levee), and three flooding conditions representing moderate to extreme hazards at 10-, 100-, and 500-year return periods. For the CR watershed, models were compared with a simplistic terrain setup (without bathymetry and any form of hydraulic controls) and one flooding condition (100-year return period). Input streamflow forcing data representing these hypothetical events were constructed by applying a new fusion approach on National Water Model outputs. Simulated inundation extent and depth from AutoRoute, HAND, and HEC-RAS 2D were compared with one another and with the corresponding FEMA reference estimates. Irrespective of the configurations, the low-complexity models were able to produce inundation extents similar to HEC-RAS 2D, with AutoRoute showing slightly higher accuracy than the HAND model. Among four terrain setups, the one including both levee and channel bathymetry showed lowest fitness score on the spatial agreement of inundation extent, due to the weak physical representation of low-complexity models compared to a hydrodynamic model. For inundation depth, the low-complexity models showed an overestimating tendency, especially in the deeper segments of the channel. Based on such reasonably good prediction skills, low-complexity flood models can be considered as a suitable alternative for fast predictions in large-scale hyper-resolution operational frameworks, without completely overriding hydrodynamic models' efficacy.

An Integrated Ecological Modeling System for Assessing ...

EPA Pesticide Factsheets

We demonstrate a novel, spatially explicit assessment of the current condition of aquatic ecosystem services, with limited sensitivity analysis for the atmospheric contaminant mercury. The Integrated Ecological Modeling System (IEMS) forecasts water quality and quantity, habitat suitability for aquatic biota, fish biomasses, population densities, productivities, and contamination by methylmercury across headwater watersheds. We applied this IEMS to the Coal River Basin (CRB), West Virginia (USA), an 8-digit hydrologic unit watershed, by simulating a network of 97 stream segments using the SWAT watershed model, a watershed mercury loading model, the WASP water quality model, the PiSCES fish community estimation model, a fish habitat suitability model, the BASS fish community and bioaccumulation model, and an ecoservices post-processer. Model application was facilitated by automated data retrieval and model setup and updated model wrappers and interfaces for data transfers between these models from a prior study. This companion study evaluates baseline predictions of ecoservices provided for 1990 – 2010 for the population of streams in the CRB and serves as a foundation for future model development. Published in the journal, Ecological Modeling. Highlights: • Demonstrate a spatially-explicit IEMS for multiple scales. • Design a flexible IEMS for

Practical considerations for coil-wrapped Distributed Temperature Sensing setups

NASA Astrophysics Data System (ADS)

Solcerova, Anna; van Emmerik, Tim; Hilgersom, Koen; van de Giesen, Nick

2015-04-01

Fiber-optic Distributed Temperature Sensing (DTS) has been applied widely in hydrological and meteorological systems. For example, DTS has been used to measure streamflow, groundwater, soil moisture and temperature, air temperature, and lake energy fluxes. Many of these applications require a spatial monitoring resolution smaller than the minimum resolution of the DTS device. Therefore, measuring with these resolutions requires a custom made setup. To obtain both high temporal and high spatial resolution temperature measurements, fiber-optic cable is often wrapped around, and glued to, a coil, for example a PVC conduit. For these setups, it is often assumed that the construction characteristics (e.g., the coil material, shape, diameter) do not influence the DTS temperature measurements significantly. This study compares DTS datasets obtained during four measurement campaigns. The datasets were acquired using different setups, allowing to investigate the influence of the construction characteristics on the monitoring results. This comparative study suggests that the construction material, shape, diameter, and way of attachment can have a significant influence on the results. We present a qualitative and quantitative approximation of errors introduced through the selection of the construction, e.g., choice of coil material, influence of solar radiation, coil diameter, and cable attachment method. Our aim is to provide insight in factors that influence DTS measurements, which designers of future DTS measurements setups can take into account. Moreover, we present a number of solutions to minimize these errors for improved temperature retrieval using DTS.

Impact of a Moving Noise Masker on Speech Perception in Cochlear Implant Users

PubMed Central

Weissgerber, Tobias; Rader, Tobias; Baumann, Uwe

2015-01-01

Objectives Previous studies investigating speech perception in noise have typically been conducted with static masker positions. The aim of this study was to investigate the effect of spatial separation of source and masker (spatial release from masking, SRM) in a moving masker setup and to evaluate the impact of adaptive beamforming in comparison with fixed directional microphones in cochlear implant (CI) users. Design Speech reception thresholds (SRT) were measured in S0N0 and in a moving masker setup (S0Nmove) in 12 normal hearing participants and 14 CI users (7 subjects bilateral, 7 bimodal with a hearing aid in the contralateral ear). Speech processor settings were a moderately directional microphone, a fixed beamformer, or an adaptive beamformer. The moving noise source was generated by means of wave field synthesis and was smoothly moved in a shape of a half-circle from one ear to the contralateral ear. Noise was presented in either of two conditions: continuous or modulated. Results SRTs in the S0Nmove setup were significantly improved compared to the S0N0 setup for both the normal hearing control group and the bilateral group in continuous noise, and for the control group in modulated noise. There was no effect of subject group. A significant effect of directional sensitivity was found in the S0Nmove setup. In the bilateral group, the adaptive beamformer achieved lower SRTs than the fixed beamformer setting. Adaptive beamforming improved SRT in both CI user groups substantially by about 3 dB (bimodal group) and 8 dB (bilateral group) depending on masker type. Conclusions CI users showed SRM that was comparable to normal hearing subjects. In listening situations of everyday life with spatial separation of source and masker, directional microphones significantly improved speech perception with individual improvements of up to 15 dB SNR. Users of bilateral speech processors with both directional microphones obtained the highest benefit. PMID:25970594

Power-law decay of the spatial correlation function in exciton-polariton condensates

PubMed Central

Roumpos, Georgios; Lohse, Michael; Nitsche, Wolfgang H.; Keeling, Jonathan; Szymańska, Marzena Hanna; Littlewood, Peter B.; Löffler, Andreas; Höfling, Sven; Worschech, Lukas; Forchel, Alfred; Yamamoto, Yoshihisa

2012-01-01

We create a large exciton-polariton condensate and employ a Michelson interferometer setup to characterize the short- and long-distance behavior of the first order spatial correlation function. Our experimental results show distinct features of both the two-dimensional and nonequilibrium characters of the condensate. We find that the gaussian short-distance decay is followed by a power-law decay at longer distances, as expected for a two-dimensional condensate. The exponent of the power law is measured in the range 0.9–1.2, larger than is possible in equilibrium. We compare the experimental results to a theoretical model to understand the features required to observe a power law and to clarify the influence of external noise on spatial coherence in nonequilibrium phase transitions. Our results indicate that Berezinskii–Kosterlitz–Thouless-like phase order survives in open-dissipative systems. PMID:22496595

Rapid Material Appearance Acquisition Using Consumer Hardware

PubMed Central

Filip, Jiří; Vávra, Radomír; Krupička, Mikuláš

2014-01-01

A photo-realistic representation of material appearance can be achieved by means of bidirectional texture function (BTF) capturing a material’s appearance for varying illumination, viewing directions, and spatial pixel coordinates. BTF captures many non-local effects in material structure such as inter-reflections, occlusions, shadowing, or scattering. The acquisition of BTF data is usually time and resource-intensive due to the high dimensionality of BTF data. This results in expensive, complex measurement setups and/or excessively long measurement times. We propose an approximate BTF acquisition setup based on a simple, affordable mechanical gantry containing a consumer camera and two LED lights. It captures a very limited subset of material surface images by shooting several video sequences. A psychophysical study comparing captured and reconstructed data with the reference BTFs of seven tested materials revealed that results of our method show a promising visual quality. Speed of the setup has been demonstrated on measurement of human skin and measurement and modeling of a glue dessication time-varying process. As it allows for fast, inexpensive, acquisition of approximate BTFs, this method can be beneficial to visualization applications demanding less accuracy, where BTF utilization has previously been limited. PMID:25340451

Entrainment and Control of Bacterial Populations: An in Silico Study over a Spatially Extended Agent Based Model.

PubMed

Mina, Petros; Tsaneva-Atanasova, Krasimira; Bernardo, Mario di

2016-07-15

We extend a spatially explicit agent based model (ABM) developed previously to investigate entrainment and control of the emergent behavior of a population of synchronized oscillating cells in a microfluidic chamber. Unlike most of the work in models of control of cellular systems which focus on temporal changes, we model individual cells with spatial dependencies which may contribute to certain behavioral responses. We use the model to investigate the response of both open loop and closed loop strategies, such as proportional control (P-control), proportional-integral control (PI-control) and proportional-integral-derivative control (PID-control), to heterogeinities and growth in the cell population, variations of the control parameters and spatial effects such as diffusion in the spatially explicit setting of a microfluidic chamber setup. We show that, as expected from the theory of phase locking in dynamical systems, open loop control can only entrain the cell population in a subset of forcing periods, with a wide variety of dynamical behaviors obtained outside these regions of entrainment. Closed-loop control is shown instead to guarantee entrainment in a much wider region of control parameter space although presenting limitations when the population size increases over a certain threshold. In silico tracking experiments are also performed to validate the ability of classical control approaches to achieve other reference behaviors such as a desired constant output or a linearly varying one. All simulations are carried out in BSim, an advanced agent-based simulator of microbial population which is here extended ad hoc to include the effects of control strategies acting onto the population.

Pressure-gradient-driven nearshore circulation on a beach influenced by a large inlet-tidal shoal system

USGS Publications Warehouse

Shi, F.; Hanes, D.M.; Kirby, J.T.; Erikson, L.; Barnard, P.; Eshleman, J.

2011-01-01

The nearshore circulation induced by a focused pattern of surface gravity waves is studied at a beach adjacent to a major inlet with a large ebb tidal shoal. Using a coupled wave and wave-averaged nearshore circulation model, it is found that the nearshore circulation is significantly affected by the heterogeneous wave patterns caused by wave refraction over the ebb tidal shoal. The model is used to predict waves and currents during field experiments conducted near the mouth of San Francisco Bay and nearby Ocean Beach. The field measurements indicate strong spatial variations in current magnitude and direction and in wave height and direction along Ocean Beach and across the ebb tidal shoal. Numerical simulations suggest that wave refraction over the ebb tidal shoal causes wave focusing toward a narrow region at Ocean Beach. Due to the resulting spatial variation in nearshore wave height, wave-induced setup exhibits a strong alongshore nonuniformity, resulting in a dramatic change in the pressure field compared to a simulation with only tidal forcing. The analysis of momentum balances inside the surf zone shows that, under wave conditions with intensive wave focusing, the alongshore pressure gradient associated with alongshore nonuniform wave setup can be a dominant force driving circulation, inducing heterogeneous alongshore currents. Pressure-gradient- forced alongshore currents can exhibit flow reversals and flow convergence or divergence, in contrast to the uniform alongshore currents typically caused by tides or homogeneous waves.

A multiprojection noncontact fluorescence tomography setup for imaging arbitrary geometries

NASA Astrophysics Data System (ADS)

Meyer, H.; Garofalakis, A.; Zacharakis, G.; Economou, E. N.; Mamalaki, C.; Kioussis, D.; Ntziachristos, V.; Ripoll, J.

2005-04-01

Optical imaging and tomography in tissues can facilitate the quantitative study of several important chromophores and fluorophores in-vivo. Due to this fact, there has been great interest in developing imaging systems offering quantitative information on the location and concentration of chromophores and fluorescent probes. However, most imaging systems currently used in research make use of fiber technology for delivery and detection, which restricts the size of the photon collecting arrays leading to insufficient spatial sampling and field of view. To enable large data sets and full 360o angular measurements, we developed a novel imaging system that enables 3D imaging of fluorescent signals in bodies of arbitrary shapes in a non-contact geometry in combination with a 3D surface reconstruction algorithm. The system consists of a rotating subject holder and a lens coupled Charge Coupled Device (CCD) camera in combination with a fiber coupled laser scanning device. An Argon ion laser is used as the source and different filters are used for the detection of various fluorophores or fluorescing proteins. With this new setup a large measurements dataset can be achieved while the use of inversion models give a high capacity for quantitative 3D reconstruction of fluorochrome distributions as well as high spatial resolution. The system is currently being tested in the observation of the distribution of Green Fluorescent Protein (GFP) expressing T-lymphocytes in order to study the function of the immune system in a murine model.

Observations of IO hot-spots at coastal sites with the combination of a mobile CE- and LP- DOAS

NASA Astrophysics Data System (ADS)

Pöhler, D.; Horbanski, M.; Schmitt, S.; Anthofer, M.; Tschritter, J.; Platt, U.

2012-04-01

Reactive iodine species are emitted by seaweed in the intertidal zone of coastal sites during low tide. Beside their oxidation to iodine oxide (IO) and reduction of ozone, they act as precursors for particle formation and therefore have a potential impact on climate. A correlation between iodine oxide and particle formation could be observed in several field studies. However, modelling studies suggest that the so far observed mixing ratios of iodine oxide are too low to explain the observed particle formation. This may be caused by the so far applied measurement techniques which either average over a long measurement path of several km (LP-DOAS) or by immobile in-situ techniques (LIF or BB-CEAS) located typically few 10-100m of the intertidal area. Thus both techniques could not observe local "hot-spots", locations with locally elevated IO levels above the background with small spatial extend (e.g. above a source). We present a new developed Cavity Enhanced Differential Optical Absorption Spectroscopy (CE- DOAS) instrument for the direct identification of IO down to 1ppt. This technique gives the possibility to achieve long absorption light paths in a compact setup (<2.0m) and thus apply the DOAS principle to in-situ measurements. The resonator of the cavity is formed by two high reflective mirrors in the spectral window from 430-460nm. To avoid any interference of reactive iodine compounds with tubes, walls or filters, the resonator is open similar to a LP-DOAS setup. A blue LED is used as light source. The total instrument setup is relatively light (25kg) and can easily be located at different locations. Hence it is possible to setup this instrument directly over the macro algae in the intertidal area during low tide to investigate the IO spatial distribution and "hot-spots". As IO concentrations vary strongly due to different meteorological parameters, the CE-DOAS measurements are combined with LP-DOAS in the same area. Thus the combination allows deriving a spatial variability. The results from the first application during the HaloCave2010 campaign on Cape Verde will be presented. Opposite to former measurements both instruments could not observe IO at any coastal site close to the CVAO station. Recently measurements were performed along the Irish west coast (partly at the research station Mace Head during MaCloud field campaign) to investigate the IO levels emitted by macro algae. During low tide the CE-DOAS instrument was regularly set-up directly in the intertidal area above the macro algae. Results of different coastal sites will be presented in detail. Elevated IO concentrations up to several 10ppt could be observed with the CE-DOAS instrument regularly, but LP-DOAS concentrations are typically more than an order of magnitude lower. The data will be discussed according to the IO "hot-spot" theory. Even at unfavorable meteorological conditions (clouds, strong wind) the CE-DOAS instrument could regularly observe enhanced IO levels. Different coastal sites show different IO emission strength and spatial distribution. The spatial distribution of IO at different coastal sites and its impact on atmospheric chemistry will be discussed.

How a European network may help with estimating methane emissions on the French national scale

NASA Astrophysics Data System (ADS)

Pison, Isabelle; Berchet, Antoine; Saunois, Marielle; Bousquet, Philippe; Broquet, Grégoire; Conil, Sébastien; Delmotte, Marc; Ganesan, Anita; Laurent, Olivier; Martin, Damien; O'Doherty, Simon; Ramonet, Michel; Spain, T. Gerard; Vermeulen, Alex; Yver Kwok, Camille

2018-03-01

Methane emissions on the national scale in France in 2012 are inferred by assimilating continuous atmospheric mixing ratio measurements from nine stations of the European network ICOS located in France and surrounding countries. To assess the robustness of the fluxes deduced by our inversion system based on an objectified quantification of uncertainties, two complementary inversion set-ups are computed and analysed: (i) a regional run correcting for the spatial distribution of fluxes in France and (ii) a sectorial run correcting fluxes for activity sectors on the national scale. In addition, our results for the two set-ups are compared with fluxes produced in the framework of the inversion inter-comparison exercise of the InGOS project. The seasonal variability in fluxes is consistent between different set-ups, with maximum emissions in summer, likely due to agricultural activity. However, very high monthly posterior uncertainties (up to ≈ 65 to 74 % in the sectorial run in May and June) make it difficult to attribute maximum emissions to a specific sector. On the yearly and national scales, the two inversions range from 3835 to 4050 Gg CH4 and from 3570 to 4190 Gg CH4 for the regional and sectorial runs, respectively, consistently with the InGOS products. These estimates are 25 to 55 % higher than the total national emissions from bottom-up approaches (biogeochemical models from natural emissions, plus inventories for anthropogenic ones), consistently pointing at missing or underestimated sources in the inventories and/or in natural sources. More specifically, in the sectorial set-up, agricultural emissions are inferred as 66% larger than estimates reported to the UNFCCC. Uncertainties in the total annual national budget are 108 and 312 Gg CH4, i.e, 3 to 8 %, for the regional and sectorial runs respectively, smaller than uncertainties in available bottom-up products, proving the added value of top-down atmospheric inversions. Therefore, even though the surface network used in 2012 does not allow us to fully constrain all regions in France accurately, a regional inversion set-up makes it possible to provide estimates of French methane fluxes with an uncertainty in the total budget of less than 10 % on the yearly timescale. Additional sites deployed since 2012 would help to constrain French emissions on finer spatial and temporal scales and attributing missing emissions to specific sectors.

Validation of WRF-Chem air quality simulations in the Netherlands at high resolution

NASA Astrophysics Data System (ADS)

Hilboll, A.; Lowe, D.; Kuenen, J. J. P.; Denier Van Der Gon, H.; Vrekoussis, M.

2017-12-01

Air pollution is the single most important environmental hazard for publichealth, and especially nitrogen dioxide (NO2) plays a key role in air qualityresearch. With the aim of improving the quality and reproducibility ofmeasurements of NO2 vertical distribution from MAX-DOAS instruments, theCINDI-2 campaign was held in Cabauw (NL) in September 2016.The measurement site was rural, but surrounded by several major pollutioncenters. Due to this spatial heterogeneity of emissions, as well as themeteorological conditions, high spatial and temporal variability in NO2 mixingratios were observed.Air quality models used in the analysis of the measured data must have highspatial resolution in order to resolve this fine spatial structure. Thisremains a challenge even today, mostly due to the uncertainties and largespatial heterogeneity of emission data, and the need to parameterize small-scaleprocesses.In this study, we use the state-of-the-art version 3.9 of the Weather Researchand Forecasting Model with Chemistry (WRF-Chem) to simulate air pollutantconcentrations over the Netherlands, to facilitate the analysis of the CINDI-2NO2 measurements. The model setup contains three nested domains withhorizontal resolutions of 15, 3, and 1 km. Anthropogenic emissions are takenfrom the TNO-MACC III inventory and, where available, from the Dutch PollutantRelease and Transfer Register (Emissieregistratie), at a spatial resolution of 7and 1 km, respectively. We use the Common Reactive Intermediates gas-phasechemical mechanism (CRIv2-R5) with the MOSAIC aerosol module.The high spatial resolution of model and emissions will allow us to resolve thestrong spatial gradients in the NO2 concentrations measured during theCINDI-2 campaign, allowing for an unprecedented level of detail in theanalysis of individual pollution sources.

Environment-induced decoherence II. Effect of decoherence on Bell's inequality for an EPR pair

NASA Astrophysics Data System (ADS)

Venugopalan, A.; Kumar, Deepak; Ghosh, R.

1995-02-01

According to Bell's theorem, the degree of correlation between spatially separated measurements on a quantum system is limited by certain inequalities if one assumes the condition of locality. Quantum mechanics predicts that this limit can be exceeded, making it nonlocal. We analyse the effect of an environment modelled by a fluctuating magnetic field on the quantum correlations in an EPR singlet as seen in the Bell inequality. We show that in an EPR setup, the system goes from the usual ‘violation’ of Bell's inequality to a ‘non-violation’ for times larger than a characteristic time scale which is related to the parameters of the fluctuating field. We also look at these inequalities as a function of the spatial separation between the EPR pair.

AQUATOX Setup Guide

EPA Pesticide Factsheets

The new Guidance in AQUATOX Setup and Application provides a quick start guide to introduce major model features, as well as being a type of cookbook to guide basic model setup, calibration, and validation.

Optical Imaging and Radiometric Modeling and Simulation

NASA Technical Reports Server (NTRS)

Ha, Kong Q.; Fitzmaurice, Michael W.; Moiser, Gary E.; Howard, Joseph M.; Le, Chi M.

2010-01-01

OPTOOL software is a general-purpose optical systems analysis tool that was developed to offer a solution to problems associated with computational programs written for the James Webb Space Telescope optical system. It integrates existing routines into coherent processes, and provides a structure with reusable capabilities that allow additional processes to be quickly developed and integrated. It has an extensive graphical user interface, which makes the tool more intuitive and friendly. OPTOOL is implemented using MATLAB with a Fourier optics-based approach for point spread function (PSF) calculations. It features parametric and Monte Carlo simulation capabilities, and uses a direct integration calculation to permit high spatial sampling of the PSF. Exit pupil optical path difference (OPD) maps can be generated using combinations of Zernike polynomials or shaped power spectral densities. The graphical user interface allows rapid creation of arbitrary pupil geometries, and entry of all other modeling parameters to support basic imaging and radiometric analyses. OPTOOL provides the capability to generate wavefront-error (WFE) maps for arbitrary grid sizes. These maps are 2D arrays containing digital sampled versions of functions ranging from Zernike polynomials to combination of sinusoidal wave functions in 2D, to functions generated from a spatial frequency power spectral distribution (PSD). It also can generate optical transfer functions (OTFs), which are incorporated into the PSF calculation. The user can specify radiometrics for the target and sky background, and key performance parameters for the instrument s focal plane array (FPA). This radiometric and detector model setup is fairly extensive, and includes parameters such as zodiacal background, thermal emission noise, read noise, and dark current. The setup also includes target spectral energy distribution as a function of wavelength for polychromatic sources, detector pixel size, and the FPA s charge diffusion modulation transfer function (MTF).

Microchannel plate cross-talk mitigation for spatial autocorrelation measurements

NASA Astrophysics Data System (ADS)

Lipka, Michał; Parniak, Michał; Wasilewski, Wojciech

2018-05-01

Microchannel plates (MCP) are the basis for many spatially resolved single-particle detectors such as ICCD or I-sCMOS cameras employing image intensifiers (II), MCPs with delay-line anodes for the detection of cold gas particles or Cherenkov radiation detectors. However, the spatial characterization provided by an MCP is severely limited by cross-talk between its microchannels, rendering MCP and II ill-suited for autocorrelation measurements. Here, we present a cross-talk subtraction method experimentally exemplified for an I-sCMOS based measurement of pseudo-thermal light second-order intensity autocorrelation function at the single-photon level. The method merely requires a dark counts measurement for calibration. A reference cross-correlation measurement certifies the cross-talk subtraction. While remaining universal for MCP applications, the presented cross-talk subtraction, in particular, simplifies quantum optical setups. With the possibility of autocorrelation measurements, the signal needs no longer to be divided into two camera regions for a cross-correlation measurement, reducing the experimental setup complexity and increasing at least twofold the simultaneously employable camera sensor region.

The characteristics and dynamics of wave-driven flow across a platform coral reef in the Red Sea

NASA Astrophysics Data System (ADS)

Lentz, S. J.; Churchill, J. H.; Davis, K. A.; Farrar, J. T.; Pineda, J.; Starczak, V.

2016-02-01

Current dynamics across a platform reef in the Red Sea near Jeddah, Saudi Arabia, are examined using 18 months of current profile, pressure, surface wave, and wind observations. The platform reef is 700 m long, 200 m across with spatial and temporal variations in water depth over the reef ranging from 0.6 to 1.6 m. Surface waves breaking at the seaward edge of the reef cause a 2-10 cm setup of sea level that drives cross-reef currents of 5-20 cm s-1. Bottom stress is a significant component of the wave setup balance in the surf zone. Over the reef flat, where waves are not breaking, the cross-reef pressure gradient associated with wave setup is balanced by bottom stress. The quadratic drag coefficient for the depth-average flow decreases with increasing water depth from Cda = 0.17 in 0.4 m of water to Cda = 0.03 in 1.2 m of water. The observed dependence of the drag coefficient on water depth is consistent with open-channel flow theory and a hydrodynamic roughness of zo = 0.06 m. A simple one-dimensional model driven by incident surface waves and wind stress accurately reproduces the observed depth-averaged cross-reef currents and a portion of the weaker along-reef currents over the focus reef and two other Red Sea platform reefs. The model indicates the cross-reef current is wave forced and the along-reef current is partially wind forced.

The possibility of identifying the spatial location of single dislocations by topo-tomography on laboratory setups

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zolotov, D. A., E-mail: zolotovden@crys.ras.ru; Buzmakov, A. V.; Elfimov, D. A.

2017-01-15

The spatial arrangement of single linear defects in a Si single crystal (input surface (111)) has been investigated by X-ray topo-tomography using laboratory X-ray sources. The experimental technique and the procedure of reconstructing a 3D image of dislocation half-loops near the Si crystal surface are described. The sizes of observed linear defects with a spatial resolution of about 10 μm are estimated.

Multimodal hyperspectral optical microscopy

DOE PAGES

Novikova, Irina V.; Smallwood, Chuck R.; Gong, Yu; ...

2017-09-02

We describe a unique and convenient approach to multimodal hyperspectral optical microscopy, herein achieved by coupling a portable and transferable hyperspectral imager to various optical microscopes. The experimental and data analysis schemes involved in recording spectrally and spatially resolved fluorescence, dark field, and optical absorption micrographs are illustrated through prototypical measurements targeting selected model systems. Namely, hyperspectral fluorescence micrographs of isolated fluorescent beads are employed to ensure spectral calibration of our detector and to gauge the attainable spatial resolution of our measurements; the recorded images are diffraction-limited. Moreover, spatially over-sampled absorption spectroscopy of a single lipid (18:1 Liss Rhod PE)more » layer reveals that optical densities on the order of 10-3 may be resolved by spatially averaging the recorded optical signatures. We also briefly illustrate two applications of our setup in the general areas of plasmonics and cell biology. Most notably, we deploy hyperspectral optical absorption microscopy to identify and image algal pigments within a single live Tisochrysis lutea cell. Overall, this work paves the way for multimodal multidimensional spectral imaging measurements spanning the realms of several scientific disciples.« less

High-order harmonic generation driven by inhomogeneous plasmonics fields spatially bounded: influence on the cut-off law

NASA Astrophysics Data System (ADS)

Neyra, E.; Videla, F.; Ciappina, M. F.; Pérez-Hernández, J. A.; Roso, L.; Lewenstein, M.; Torchia, G. A.

2018-03-01

We study high-order harmonic generation (HHG) in model atoms driven by plasmonic-enhanced fields. These fields result from the illumination of plasmonic nanostructures by few-cycle laser pulses. We demonstrate that the spatial inhomogeneous character of the laser electric field, in a form of Gaussian-shaped functions, leads to an unexpected relationship between the HHG cutoff and the laser wavelength. Precise description of the spatial form of the plasmonic-enhanced field allows us to predict this relationship. We combine the numerical solutions of the time-dependent Schrödinger equation (TDSE) with the plasmonic-enhanced electric fields obtained from 3D finite element simulations. We additionally employ classical simulations to supplement the TDSE outcomes and characterize the extended HHG spectra by means of their associated electron trajectories. A proper definition of the spatially inhomogeneous laser electric field is instrumental to accurately describe the underlying physics of HHG driven by plasmonic-enhanced fields. This characterization opens up new perspectives for HHG control with various experimental nano-setups.

Multimodal hyperspectral optical microscopy

DOE Office of Scientific and Technical Information (OSTI.GOV)

Novikova, Irina V.; Smallwood, Chuck R.; Gong, Yu

We describe a unique and convenient approach to multimodal hyperspectral optical microscopy, herein achieved by coupling a portable and transferable hyperspectral imager to various optical microscopes. The experimental and data analysis schemes involved in recording spectrally and spatially resolved fluorescence, dark field, and optical absorption micrographs are illustrated through prototypical measurements targeting selected model systems. Namely, hyperspectral fluorescence micrographs of isolated fluorescent beads are employed to ensure spectral calibration of our detector and to gauge the attainable spatial resolution of our measurements; the recorded images are diffraction-limited. Moreover, spatially over-sampled absorption spectroscopy of a single lipid (18:1 Liss Rhod PE)more » layer reveals that optical densities on the order of 10-3 may be resolved by spatially averaging the recorded optical signatures. We also briefly illustrate two applications of our setup in the general areas of plasmonics and cell biology. Most notably, we deploy hyperspectral optical absorption microscopy to identify and image algal pigments within a single live Tisochrysis lutea cell. Overall, this work paves the way for multimodal multidimensional spectral imaging measurements spanning the realms of several scientific disciples.« less

Fourier ptychographic reconstruction using Poisson maximum likelihood and truncated Wirtinger gradient.

PubMed

Bian, Liheng; Suo, Jinli; Chung, Jaebum; Ou, Xiaoze; Yang, Changhuei; Chen, Feng; Dai, Qionghai

2016-06-10

Fourier ptychographic microscopy (FPM) is a novel computational coherent imaging technique for high space-bandwidth product imaging. Mathematically, Fourier ptychographic (FP) reconstruction can be implemented as a phase retrieval optimization process, in which we only obtain low resolution intensity images corresponding to the sub-bands of the sample's high resolution (HR) spatial spectrum, and aim to retrieve the complex HR spectrum. In real setups, the measurements always suffer from various degenerations such as Gaussian noise, Poisson noise, speckle noise and pupil location error, which would largely degrade the reconstruction. To efficiently address these degenerations, we propose a novel FP reconstruction method under a gradient descent optimization framework in this paper. The technique utilizes Poisson maximum likelihood for better signal modeling, and truncated Wirtinger gradient for effective error removal. Results on both simulated data and real data captured using our laser-illuminated FPM setup show that the proposed method outperforms other state-of-the-art algorithms. Also, we have released our source code for non-commercial use.

Impact of surrounding environment evolution on long-term gas flux measurements in a temperate mixed forest

NASA Astrophysics Data System (ADS)

Hurdebise, Quentin; Rixen, Toma; De Ligne, Anne; Vincke, Caroline; Heinesch, Bernard; Aubinet, Marc

2016-04-01

With the development of eddy covariance networks like Fluxnet, ICOS or NEON, long-term data series of carbon dioxide, water vapor and other gas exchanges between terrestrial ecosystems and atmosphere will become more and more numerous. However, long-term analyses of such exchanges require a good understanding of measurement conditions during the investigated period. Independently of climate drivers, measurements may indeed be influenced by measurement conditions themselves subjected to long-term variability due to vegetation growth or set-up changes. The present research refers to the Vielsalm Terrestrial Observatory (VTO) where fluxes of momentum, carbon dioxide, latent and sensible heat have been continuously measured by eddy covariance during twenty years. VTO is an ICOS site installed in a mixed forest (beech, silver fir, Douglas fir, Norway spruce) in the Belgian Ardennes. A multidisciplinary approach was developed in order to investigate the spatial and temporal evolution of several site characteristics: -displacement height (d) and relative measurement height (z-d) were determined using a spectral approach that compared observed and theoretical cospectra; -turbulence statistics were analyzed in the context of Monin-Obukhov similarity theory; -tree height during the measurement period was obtained by combining tree height inventories, a LIDAR survey and tree growth models; -measurement footprint was determined by using a footprint model. A good agreement was found between the three first approaches. Results show notably that z-d was subjected to both temporal and spatial evolution. Temporal evolution resulted from continuous tree growth as well as from a tower raise, achieved in 2009. Spatial evolution, due to canopy heterogeneity, was also observed. The impacts of these changes on measurements are investigated. In particular, it was shown that they affect measurement footprint, flux spectral corrections and flux quality. All these effects must be taken into consideration in order to disentangle long-term flux evolutions due to climate or phenology from changes resulting from measurement set-up changes.

Complementary aspects of spatial resolution and signal-to-noise ratio in computational imaging

NASA Astrophysics Data System (ADS)

Gureyev, T. E.; Paganin, D. M.; Kozlov, A.; Nesterets, Ya. I.; Quiney, H. M.

2018-05-01

A generic computational imaging setup is considered which assumes sequential illumination of a semitransparent object by an arbitrary set of structured coherent illumination patterns. For each incident illumination pattern, all transmitted light is collected by a photon-counting bucket (single-pixel) detector. The transmission coefficients measured in this way are then used to reconstruct the spatial distribution of the object's projected transmission. It is demonstrated that the square of the spatial resolution of such a setup is usually equal to the ratio of the image area to the number of linearly independent illumination patterns. If the noise in the measured transmission coefficients is dominated by photon shot noise, then the ratio of the square of the mean signal to the noise variance is proportional to the ratio of the mean number of registered photons to the number of illumination patterns. The signal-to-noise ratio in a reconstructed transmission distribution is always lower if the illumination patterns are nonorthogonal, because of spatial correlations in the measured data. Examples of imaging methods relevant to the presented analysis include conventional imaging with a pixelated detector, computational ghost imaging, compressive sensing, super-resolution imaging, and computed tomography.

Determination of the Interaction Position of Gamma Photons in Monolithic Scintillators Using Neural Network Fitting

NASA Astrophysics Data System (ADS)

Conde, P.; Iborra, A.; González, A. J.; Hernández, L.; Bellido, P.; Moliner, L.; Rigla, J. P.; Rodríguez-Álvarez, M. J.; Sánchez, F.; Seimetz, M.; Soriano, A.; Vidal, L. F.; Benlloch, J. M.

2016-02-01

In Positron Emission Tomography (PET) detectors based on monolithic scintillators, the photon interaction position needs to be estimated from the light distribution (LD) on the photodetector pixels. Due to the finite size of the scintillator volume, the symmetry of the LD is truncated everywhere except for the crystal center. This effect produces a poor estimation of the interaction positions towards the edges, an especially critical situation when linear algorithms, such as Center of Gravity (CoG), are used. When all the crystal faces are painted black, except the one in contact with the photodetector, the LD can be assumed to behave as the inverse square law, providing a simple theoretical model. Using this LD model, the interaction coordinates can be determined by means of fitting each event to a theoretical distribution. In that sense, the use of neural networks (NNs) has been shown to be an effective alternative to more traditional fitting techniques as nonlinear least squares (LS). The multilayer perceptron is one type of NN which can model non-linear functions well and can be trained to accurately generalize when presented with new data. In this work we have shown the capability of NNs to approximate the LD and provide the interaction coordinates of γ-photons with two different photodetector setups. One experimental setup was based on analog Silicon Photomultipliers (SiPMs) and a charge division diode network, whereas the second setup was based on digital SiPMs (dSiPMs). In both experiments NNs minimized border effects. Average spatial resolutions of 1.9 ±0.2 mm and 1.7 ±0.2 mm for the entire crystal surface were obtained for the analog and dSiPMs approaches, respectively.

A comprehensive sensitivity analysis of the WRF model for air quality applications over the Iberian Peninsula

NASA Astrophysics Data System (ADS)

Borge, Rafael; Alexandrov, Vassil; José del Vas, Juan; Lumbreras, Julio; Rodríguez, Encarnacion

Meteorological inputs play a vital role on regional air quality modelling. An extensive sensitivity analysis of the Weather Research and Forecasting (WRF) model was performed, in the framework of the Integrated Assessment Modelling System for the Iberian Peninsula (SIMCA) project. Up to 23 alternative model configurations, including Planetary Boundary Layer schemes, Microphysics, Land-surface models, Radiation schemes, Sea Surface Temperature and Four-Dimensional Data Assimilation were tested in a 3 km spatial resolution domain. Model results for the most significant meteorological variables, were assessed through a series of common statistics. The physics options identified to produce better results (Yonsei University Planetary Boundary Layer, WRF Single-Moment 6-class microphysics, Noah Land-surface model, Eta Geophysical Fluid Dynamics Laboratory longwave radiation and MM5 shortwave radiation schemes) along with other relevant user settings (time-varying Sea Surface Temperature and combined grid-observational nudging) where included in a "best case" configuration. This setup was tested and found to produce more accurate estimation of temperature, wind and humidity fields at surface level than any other configuration for the two episodes simulated. Planetary Boundary Layer height predictions showed a reasonable agreement with estimations derived from routine atmospheric soundings. Although some seasonal and geographical differences were observed, the model showed an acceptable behaviour overall. Despite being useful to define the most appropriate setup of the WRF model for air quality modelling over the Iberian Peninsula, this study provides a general overview of WRF sensitivity and can constitute a reference for future mesoscale meteorological modelling exercises.

Electric field stimulation setup for photoemission electron microscopes.

PubMed

Buzzi, M; Vaz, C A F; Raabe, J; Nolting, F

2015-08-01

Manipulating magnetisation by the application of an electric field in magnetoelectric multiferroics represents a timely issue due to the potential applications in low power electronics and the novel physics involved. Thanks to its element sensitivity and high spatial resolution, X-ray photoemission electron microscopy is a uniquely suited technique for the investigation of magnetoelectric coupling in multiferroic materials. In this work, we present a setup that allows for the application of in situ electric and magnetic fields while the sample is analysed in the microscope. As an example of the performances of the setup, we present measurements on Ni/Pb(Mg(0.66)Nb(0.33))O3-PbTiO3 and La(0.7)Sr(0.3)MnO3/PMN-PT artificial multiferroic nanostructures.

Validating a spatially distributed hydrological model with soil morphology data

NASA Astrophysics Data System (ADS)

Doppler, T.; Honti, M.; Zihlmann, U.; Weisskopf, P.; Stamm, C.

2013-10-01

Spatially distributed hydrological models are popular tools in hydrology and they are claimed to be useful to support management decisions. Despite the high spatial resolution of the computed variables, calibration and validation is often carried out only on discharge time-series at specific locations due to the lack of spatially distributed reference data. Because of this restriction, the predictive power of these models, with regard to predicted spatial patterns, can usually not be judged. An example of spatial predictions in hydrology is the prediction of saturated areas in agricultural catchments. These areas can be important source areas for the transport of agrochemicals to the stream. We set up a spatially distributed model to predict saturated areas in a 1.2 km2 catchment in Switzerland with moderate topography. Around 40% of the catchment area are artificially drained. We measured weather data, discharge and groundwater levels in 11 piezometers for 1.5 yr. For broadening the spatially distributed data sets that can be used for model calibration and validation, we translated soil morphological data available from soil maps into an estimate of the duration of soil saturation in the soil horizons. We used redox-morphology signs for these estimates. This resulted in a data set with high spatial coverage on which the model predictions were validated. In general, these saturation estimates corresponded well to the measured groundwater levels. We worked with a model that would be applicable for management decisions because of its fast calculation speed and rather low data requirements. We simultaneously calibrated the model to the groundwater levels in the piezometers and discharge. The model was able to reproduce the general hydrological behavior of the catchment in terms of discharge and absolute groundwater levels. However, the accuracy of the groundwater level predictions was not high enough to be used for the prediction of saturated areas. The groundwater level dynamics were not adequately reproduced and the predicted spatial patterns of soil saturation did not correspond to the patterns estimated from the soil map. Our results indicate that an accurate prediction of the groundwater level dynamics of the shallow groundwater in our catchment that is subject to artificial drainage would require a more complex model. Especially high spatial resolution and very detailed process representations at the boundary between the unsaturated and the saturated zone are expected to be crucial. The data needed for such a detailed model are not generally available. The high computational demand and the complex model setup would require more resources than the direct identification of saturated areas in the field. This severely hampers the practical use of such models despite their usefulness for scientific purposes.

Magnetic field `flyby' measurement using a smartphone's magnetometer and accelerometer simultaneously

NASA Astrophysics Data System (ADS)

Monteiro, Martín; Stari, Cecilia; Cabeza, Cecilia; Marti, Arturo C.

2017-12-01

The spatial dependence of magnetic fields in simple configurations is a common topic in introductory electromagnetism lessons, both in high school and in university courses. In typical experiments, magnetic fields and distances are obtained taking point-by-point values using a Hall sensor and a ruler, respectively. Here, we show how to take advantage of the smartphone capabilities to get simultaneous measures with the built-in accelerometer and magnetometer and to obtain the spatial dependence of magnetic fields. We consider a simple setup consisting of a smartphone mounted on a track whose direction coincides with the axis of a coil. While the smartphone is moving on the track, both the magnetic field and the distance from the center of the coil (integrated numerically from the acceleration values) are simultaneously obtained. This methodology can easily be extended to more complicated setups.

Development of a New Optical Measuring Set-Up

NASA Astrophysics Data System (ADS)

Miroshnichenko, I. P.; Parinov, I. A.

2018-06-01

The paper proposes a description of the developed optical measuring set-up for the contactless recording and processing of measurement results for small spatial (linear and angular) displacements of control surfaces based on the use of laser technologies and optical interference methods. The proposed set-up is designed to solve all the arising measurement tasks in the study of the physical and mechanical properties of new materials and in the process of diagnosing the state of structural materials by acoustic active methods of nondestructive testing. The structure of the set-up, its constituent parts are described, and the features of construction and functioning during measurements are discussed. New technical solutions for the implementation of the components of the set-up under consideration are obtained. The purpose and description of the original specialized software, used to perform a priori analysis of measurement results, are present, while performing measurements, for a posteriori analysis of measurement results. Moreover, the influences of internal and external disturbance effects on the measurement results and correcting measurement results directly in their implementation are determined. The technical solutions, used in the set-up, are protected by the patents of the Russian Federation for inventions, and software is protected by the certificates of state registration of computer programs. The proposed set-up is intended for use in instrumentation, mechanical engineering, shipbuilding, aviation, energy sector, etc.

x-y curvature wavefront sensor.

PubMed

Cagigal, Manuel P; Valle, Pedro J

2015-04-15

In this Letter, we propose a new curvature wavefront sensor based on the principles of optical differentiation. The theoretically modeled setup consists of a diffractive optical mask placed at the intermediate plane of a classical two-lens coherent optical processor. The resulting image is composed of a number of local derivatives of the entrance pupil function whose proper combination provides the wavefront curvature. In contrast to the common radial curvature sensors, this one is able to provide the x and y wavefront curvature maps simultaneously. The sensor offers other additional advantages like having high spatial resolution, adjustable dynamic range, and not being sensitive to misalignment.

On the value of surface saturated area dynamics mapped with thermal infrared imagery for modeling the hillslope-riparian-stream continuum

NASA Astrophysics Data System (ADS)

Glaser, Barbara; Klaus, Julian; Frei, Sven; Frentress, Jay; Pfister, Laurent; Hopp, Luisa

2016-10-01

The highly dynamic processes within a hillslope-riparian-stream (HRS) continuum are known to affect streamflow generation, but are yet not fully understood. Within this study, we simulated a headwater HRS continuum in western Luxembourg with an integrated hydrologic surface subsurface model (HydroGeoSphere). The model was setup with thorough consideration of catchment-specific attributes and we performed a multicriteria model evaluation (4 years) with special focus on the temporally varying spatial patterns of surface saturation. We used a portable thermal infrared (TIR) camera to map surface saturation with a high spatial resolution and collected 20 panoramic snapshots of the riparian zone (approx. 10 m × 20 m) under different hydrologic conditions. Qualitative and quantitative comparison of the processed TIR panoramas and the corresponding model output panoramas revealed a good agreement between spatiotemporal dynamic model and field surface saturation patterns. A double logarithmic linear relationship between surface saturation extent and discharge was similar for modeled and observed data. This provided confidence in the capability of an integrated hydrologic surface subsurface model to represent temporal and spatial water flux dynamics at small (HRS continuum) scales. However, model scenarios with different parameterizations of the riparian zone showed that discharge and surface saturation were controlled by different parameters and hardly influenced each other. Surface saturation only affected very fast runoff responses with a small volumetric contribution to stream discharge, indicating that the dynamic surface saturation in the riparian zone does not necessarily imply a major control on runoff generation.

Numerical modeling of the near-field hydraulics of water wells.

PubMed

Houben, Georg J; Hauschild, Sarah

2011-01-01

Numerical flow models can be a useful tool for dimensioning water wells and to investigate the hydraulics in their near-field. Fully laminar flow can be assumed for all models calculated up to the screen. Therefore models can be used to predict--at least qualitatively, neglecting turbulent losses inside the well--the spatial distribution of inflow into the well and the overall hydraulic performance of different combinations of aquifer parameters and technical installations. Models for both horizontal (plan view) and vertical flow (cross section) to wells were calculated for a variety of setups. For the latter, this included variations of hydraulic conductivity of the screen, pump position, and aquifer heterogeneity. Models of suction flow control devices showed that they indeed can homogenize inflow, albeit at the cost of elevated entrance losses. Copyright © 2010 The Author(s). Journal compilation © 2010 National Ground Water Association.

Revisiting Temporal Markov Chains for Continuum modeling of Transport in Porous Media

NASA Astrophysics Data System (ADS)

Delgoshaie, A. H.; Jenny, P.; Tchelepi, H.

2017-12-01

The transport of fluids in porous media is dominated by flow­-field heterogeneity resulting from the underlying permeability field. Due to the high uncertainty in the permeability field, many realizations of the reference geological model are used to describe the statistics of the transport phenomena in a Monte Carlo (MC) framework. There has been strong interest in working with stochastic formulations of the transport that are different from the standard MC approach. Several stochastic models based on a velocity process for tracer particle trajectories have been proposed. Previous studies have shown that for high variances of the log-conductivity, the stochastic models need to account for correlations between consecutive velocity transitions to predict dispersion accurately. The correlated velocity models proposed in the literature can be divided into two general classes of temporal and spatial Markov models. Temporal Markov models have been applied successfully to tracer transport in both the longitudinal and transverse directions. These temporal models are Stochastic Differential Equations (SDEs) with very specific drift and diffusion terms tailored for a specific permeability correlation structure. The drift and diffusion functions devised for a certain setup would not necessarily be suitable for a different scenario, (e.g., a different permeability correlation structure). The spatial Markov models are simple discrete Markov chains that do not require case specific assumptions. However, transverse spreading of contaminant plumes has not been successfully modeled with the available correlated spatial models. Here, we propose a temporal discrete Markov chain to model both the longitudinal and transverse dispersion in a two-dimensional domain. We demonstrate that these temporal Markov models are valid for different correlation structures without modification. Similar to the temporal SDEs, the proposed model respects the limited asymptotic transverse spreading of the plume in two-dimensional problems.

On the Fidelity of Semi-distributed Hydrologic Model Simulations for Large Scale Catchment Applications

NASA Astrophysics Data System (ADS)

Ajami, H.; Sharma, A.; Lakshmi, V.

2017-12-01

Application of semi-distributed hydrologic modeling frameworks is a viable alternative to fully distributed hyper-resolution hydrologic models due to computational efficiency and resolving fine-scale spatial structure of hydrologic fluxes and states. However, fidelity of semi-distributed model simulations is impacted by (1) formulation of hydrologic response units (HRUs), and (2) aggregation of catchment properties for formulating simulation elements. Here, we evaluate the performance of a recently developed Soil Moisture and Runoff simulation Toolkit (SMART) for large catchment scale simulations. In SMART, topologically connected HRUs are delineated using thresholds obtained from topographic and geomorphic analysis of a catchment, and simulation elements are equivalent cross sections (ECS) representative of a hillslope in first order sub-basins. Earlier investigations have shown that formulation of ECSs at the scale of a first order sub-basin reduces computational time significantly without compromising simulation accuracy. However, the implementation of this approach has not been fully explored for catchment scale simulations. To assess SMART performance, we set-up the model over the Little Washita watershed in Oklahoma. Model evaluations using in-situ soil moisture observations show satisfactory model performance. In addition, we evaluated the performance of a number of soil moisture disaggregation schemes recently developed to provide spatially explicit soil moisture outputs at fine scale resolution. Our results illustrate that the statistical disaggregation scheme performs significantly better than the methods based on topographic data. Future work is focused on assessing the performance of SMART using remotely sensed soil moisture observations using spatially based model evaluation metrics.

Speed of sound and photoacoustic imaging with an optical camera based ultrasound detection system

NASA Astrophysics Data System (ADS)

Nuster, Robert; Paltauf, Guenther

2017-07-01

CCD camera based optical ultrasound detection is a promising alternative approach for high resolution 3D photoacoustic imaging (PAI). To fully exploit its potential and to achieve an image resolution <50 μm, it is necessary to incorporate variations of the speed of sound (SOS) in the image reconstruction algorithm. Hence, in the proposed work the idea and a first implementation are shown how speed of sound imaging can be added to a previously developed camera based PAI setup. The current setup provides SOS-maps with a spatial resolution of 2 mm and an accuracy of the obtained absolute SOS values of about 1%. The proposed dual-modality setup has the potential to provide highly resolved and perfectly co-registered 3D photoacoustic and SOS images.

First steps towards dual-modality 3D photoacoustic and speed of sound imaging with optical ultrasound detection

NASA Astrophysics Data System (ADS)

Nuster, Robert; Wurzinger, Gerhild; Paltauf, Guenther

2017-03-01

CCD camera based optical ultrasound detection is a promising alternative approach for high resolution 3D photoacoustic imaging (PAI). To fully exploit its potential and to achieve an image resolution <50 μm, it is necessary to incorporate variations of the speed of sound (SOS) in the image reconstruction algorithm. Hence, in the proposed work the idea and a first implementation are shown how speed of sound imaging can be added to a previously developed camera based PAI setup. The current setup provides SOS-maps with a spatial resolution of 2 mm and an accuracy of the obtained absolute SOS values of about 1%. The proposed dual-modality setup has the potential to provide highly resolved and perfectly co-registered 3D photoacoustic and SOS images.

The future of structural fieldwork - UAV assisted aerial photogrammetry

NASA Astrophysics Data System (ADS)

Vollgger, Stefan; Cruden, Alexander

2015-04-01

Unmanned aerial vehicles (UAVs), commonly referred to as drones, are opening new and low cost possibilities to acquire high-resolution aerial images and digital surface models (DSM) for applications in structural geology. UAVs can be programmed to fly autonomously along a user defined grid to systematically capture high-resolution photographs, even in difficult to access areas. The photographs are subsequently processed using software that employ SIFT (scale invariant feature transform) and SFM (structure from motion) algorithms. These photogrammetric routines allow the extraction of spatial information (3D point clouds, digital elevation models, 3D meshes, orthophotos) from 2D images. Depending on flight altitude and camera setup, sub-centimeter spatial resolutions can be achieved. By "digitally mapping" georeferenced 3D models and images, orientation data can be extracted directly and used to analyse the structural framework of the mapped object or area. We present UAV assisted aerial mapping results from a coastal platform near Cape Liptrap (Victoria, Australia), where deformed metasediments of the Palaeozoic Lachlan Fold Belt are exposed. We also show how orientation and spatial information of brittle and ductile structures extracted from the photogrammetric model can be linked to the progressive development of folds and faults in the region. Even though there are both technical and legislative limitations, which might prohibit the use of UAVs without prior commercial licensing and training, the benefits that arise from the resulting high-resolution, photorealistic models can substantially contribute to the collection of new data and insights for applications in structural geology.

Spatially distributed potential evapotranspiration modeling and climate projections.

PubMed

Gharbia, Salem S; Smullen, Trevor; Gill, Laurence; Johnston, Paul; Pilla, Francesco

2018-08-15

Evapotranspiration integrates energy and mass transfer between the Earth's surface and atmosphere and is the most active mechanism linking the atmosphere, hydrosphsophere, lithosphere and biosphere. This study focuses on the fine resolution modeling and projection of spatially distributed potential evapotranspiration on the large catchment scale as response to climate change. Six potential evapotranspiration designed algorithms, systematically selected based on a structured criteria and data availability, have been applied and then validated to long-term mean monthly data for the Shannon River catchment with a 50m 2 cell size. The best validated algorithm was therefore applied to evaluate the possible effect of future climate change on potential evapotranspiration rates. Spatially distributed potential evapotranspiration projections have been modeled based on climate change projections from multi-GCM ensembles for three future time intervals (2020, 2050 and 2080) using a range of different Representative Concentration Pathways producing four scenarios for each time interval. Finally, seasonal results have been compared to baseline results to evaluate the impact of climate change on the potential evapotranspiration and therefor on the catchment dynamical water balance. The results present evidence that the modeled climate change scenarios would have a significant impact on the future potential evapotranspiration rates. All the simulated scenarios predicted an increase in potential evapotranspiration for each modeled future time interval, which would significantly affect the dynamical catchment water balance. This study addresses the gap in the literature of using GIS-based algorithms to model fine-scale spatially distributed potential evapotranspiration on the large catchment systems based on climatological observations and simulations in different climatological zones. Providing fine-scale potential evapotranspiration data is very crucial to assess the dynamical catchment water balance to setup management scenarios for the water abstractions. This study illustrates a transferable systematic method to design GIS-based algorithms to simulate spatially distributed potential evapotranspiration on the large catchment systems. Copyright © 2018 Elsevier B.V. All rights reserved.

Automated laser guidance of neuronal growth cones using a spatial light modulator.

PubMed

Carnegie, David J; Cizmár, Tomás; Baumgartl, Jörg; Gunn-Moore, Frank J; Dholakia, Kishan

2009-11-01

The growth cone of a developing neuron can be guided using a focused infra-red (IR) laser beam [1]. In previous setups this process has required a significant amount of user intervention to adjust continuously the laser beam to guide the growing neuron. Previously, a system using an acousto-optical deflector (AOD) has been developed to steer the beam [2]. However, to enhance the controllability of this system, here we demonstrate the use of a computer controlled spatial light modulator (SLM) to steer and manipulate the shape of a laser beam for use in guided neuronal growth. This new experimental setup paves the way to enable a comprehensive investigation into beam shaping effects on neuronal growth and we show neuronal growth initiated by a Bessel light mode. This is a robust platform to explore the biochemistry of this novel phenomenon. (c) 2009 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim

Accuracy in breast shape alignment with 3D surface fitting algorithms.

PubMed

Riboldi, Marco; Gierga, David P; Chen, George T Y; Baroni, Guido

2009-04-01

Surface imaging is in use in radiotherapy clinical practice for patient setup optimization and monitoring. Breast alignment is accomplished by searching for a tentative spatial correspondence between the reference and daily surface shape models. In this study, the authors quantify whole breast shape alignment by relying on texture features digitized on 3D surface models. Texture feature localization was validated through repeated measurements in a silicone breast phantom, mounted on a high precision mechanical stage. Clinical investigations on breast shape alignment included 133 fractions in 18 patients treated with accelerated partial breast irradiation. The breast shape was detected with a 3D video based surface imaging system so that breathing was compensated. An in-house algorithm for breast alignment, based on surface fitting constrained by nipple matching (constrained surface fitting), was applied. Results were compared with a commercial software where no constraints are utilized (unconstrained surface fitting). Texture feature localization was validated within 2 mm in each anatomical direction. Clinical data show that unconstrained surface fitting achieves adequate accuracy in most cases, though nipple mismatch is considerably higher than residual surface distances (3.9 mm vs 0.6 mm on average). Outliers beyond 1 cm can be experienced as the result of a degenerate surface fit, where unconstrained surface fitting is not sufficient to establish spatial correspondence. In the constrained surface fitting algorithm, average surface mismatch within 1 mm was obtained when nipple position was forced to match in the [1.5; 5] mm range. In conclusion, optimal results can be obtained by trading off the desired overall surface congruence vs matching of selected landmarks (constraint). Constrained surface fitting is put forward to represent an improvement in setup accuracy for those applications where whole breast positional reproducibility is an issue.

Inflationary preheating dynamics with two-species condensates

NASA Astrophysics Data System (ADS)

Zache, T. V.; Kasper, V.; Berges, J.

2017-06-01

We investigate both analytically and numerically a two-component ultracold atom system in one spatial dimension. The model features a tachyonic instability, which incorporates characteristic aspects of the mechanisms for particle production in early universe inflaton models. We establish a direct correspondence between measurable macroscopic growth rates for occupation numbers of the ultracold Bose gas and the underlying microscopic processes in terms of Feynman loop diagrams. We analyze several existing ultracold atom setups featuring dynamical instabilities and propose optimized protocols for their experimental realization. We demonstrate that relevant dynamical processes can be enhanced using a seeding procedure for unstable modes and clarify the role of initial quantum fluctuations and the generation of a nonlinear secondary stage for the amplification of modes.

Characterization and Modeling of Dust Emissions from an Instrumented Mine Tailings Site

NASA Astrophysics Data System (ADS)

Betterton, E. A.; Stovern, M.; Saez, A.; Csavina, J. L.; Felix Villar, O. I.; Field, J. P.; Rine, K. P.; Russell, M. R.; Saliba, P.

2012-12-01

Mining operations are potential sources of airborne particulate metal and metalloid contaminants through both direct smelter emissions and wind erosion of mine tailings. The warmer, drier conditions predicted for the Southwestern US by climate models may make contaminated atmospheric dust and aerosols increasingly important, due to potential deleterious effects on human health and ecology. Dust emissions and dispersion of contaminants from the Iron King Mine tailings in Dewey-Humboldt, Arizona, a Superfund site, are currently being investigated through in situ field measurements and computational fluid dynamics modeling. These tailings are heavily contaminated with lead and arsenic. We report on the chemical characterization of atmospheric dust and aerosol sampled near the mine tailings. Instrumented eddy flux towers were also setup on the mine tailings to give both spatial and temporal dust observations. The eddy flux towers have multiple DUSTTRAK monitors as well as weather stations. These in situ observations allow us to assess spatial distribution of suspended particulate. Using the DUSTTRAK flux tower observations at 10-second resolution in conjunction with a computational fluid dynamics model, we have been able to model dust transport from the mine tailings to downwind areas. In order to improve the accuracy of the dust transport simulations both regional topographical features and local weather patterns have been incorporated into the model simulations.

Analysis of dispatching rules in a stochastic dynamic job shop manufacturing system with sequence-dependent setup times

NASA Astrophysics Data System (ADS)

Sharma, Pankaj; Jain, Ajai

2014-12-01

Stochastic dynamic job shop scheduling problem with consideration of sequence-dependent setup times are among the most difficult classes of scheduling problems. This paper assesses the performance of nine dispatching rules in such shop from makespan, mean flow time, maximum flow time, mean tardiness, maximum tardiness, number of tardy jobs, total setups and mean setup time performance measures viewpoint. A discrete event simulation model of a stochastic dynamic job shop manufacturing system is developed for investigation purpose. Nine dispatching rules identified from literature are incorporated in the simulation model. The simulation experiments are conducted under due date tightness factor of 3, shop utilization percentage of 90% and setup times less than processing times. Results indicate that shortest setup time (SIMSET) rule provides the best performance for mean flow time and number of tardy jobs measures. The job with similar setup and modified earliest due date (JMEDD) rule provides the best performance for makespan, maximum flow time, mean tardiness, maximum tardiness, total setups and mean setup time measures.

Hybrid Seminumerical Simulation Scheme to Predict Transducer Outputs of Acoustic Microscopes.

PubMed

Nierla, Michael; Rupitsch, Stefan J

2016-02-01

We present a seminumerical simulation method called SIRFEM, which enables the efficient prediction of high-frequency transducer outputs. In particular, this is important for acoustic microscopy where the specimen under investigation is immersed in a coupling fluid. Conventional finite-element (FE) simulations for such applications would consume too much computational power due to the required spatial and temporal discretization, especially for the coupling fluid between ultrasonic transducer and specimen. However, FE simulations are in most cases essential to consider the mode conversion at and inside the solid specimen as well as the wave propagation in its interior. SIRFEM reduces the computational effort of pure FE simulations by treating only the solid specimen and a small part of the fluid layer with FE. The propagation in the coupling fluid from transducer to specimen and back is processed by the so-called spatial impulse response (SIR). Through this hybrid approach, the number of elements as well as the number of time steps for the FE simulation can be reduced significantly, as it is presented for an axis-symmetric setup. Three B-mode images of a plane 2-D setup-computed at a transducer center frequency of 20 MHz-show that SIRFEM is, furthermore, able to predict reflections at inner structures as well as multiple reflections between those structures and the specimen's surface. For the purpose of a pure 2-D setup, the SIR of a curved-line transducer is derived and compared to the response function of a cylindrically focused aperture of negligible extend in the third spatial dimension.

CALIFA, the Calar Alto Legacy Integral Field Area survey. III. Second public data release

NASA Astrophysics Data System (ADS)

García-Benito, R.; Zibetti, S.; Sánchez, S. F.; Husemann, B.; de Amorim, A. L.; Castillo-Morales, A.; Cid Fernandes, R.; Ellis, S. C.; Falcón-Barroso, J.; Galbany, L.; Gil de Paz, A.; González Delgado, R. M.; Lacerda, E. A. D.; López-Fernandez, R.; de Lorenzo-Cáceres, A.; Lyubenova, M.; Marino, R. A.; Mast, D.; Mendoza, M. A.; Pérez, E.; Vale Asari, N.; Aguerri, J. A. L.; Ascasibar, Y.; Bekeraitė, S.; Bland-Hawthorn, J.; Barrera-Ballesteros, J. K.; Bomans, D. J.; Cano-Díaz, M.; Catalán-Torrecilla, C.; Cortijo, C.; Delgado-Inglada, G.; Demleitner, M.; Dettmar, R.-J.; Díaz, A. I.; Florido, E.; Gallazzi, A.; García-Lorenzo, B.; Gomes, J. M.; Holmes, L.; Iglesias-Páramo, J.; Jahnke, K.; Kalinova, V.; Kehrig, C.; Kennicutt, R. C.; López-Sánchez, Á. R.; Márquez, I.; Masegosa, J.; Meidt, S. E.; Mendez-Abreu, J.; Mollá, M.; Monreal-Ibero, A.; Morisset, C.; del Olmo, A.; Papaderos, P.; Pérez, I.; Quirrenbach, A.; Rosales-Ortega, F. F.; Roth, M. M.; Ruiz-Lara, T.; Sánchez-Blázquez, P.; Sánchez-Menguiano, L.; Singh, R.; Spekkens, K.; Stanishev, V.; Torres-Papaqui, J. P.; van de Ven, G.; Vilchez, J. M.; Walcher, C. J.; Wild, V.; Wisotzki, L.; Ziegler, B.; Alves, J.; Barrado, D.; Quintana, J. M.; Aceituno, J.

2015-04-01

This paper describes the Second Public Data Release (DR2) of the Calar Alto Legacy Integral Field Area (CALIFA) survey. The data for 200 objects are made public, including the 100 galaxies of the First Public Data Release (DR1). Data were obtained with the integral-field spectrograph PMAS/PPak mounted on the 3.5 m telescope at the Calar Alto observatory. Two different spectral setups are available for each galaxy, (i) a low-resolution V500 setup covering the wavelength range 3745-7500 Å with a spectral resolution of 6.0 Å (FWHM); and (ii) a medium-resolution V1200 setup covering the wavelength range 3650-4840 Å with a spectral resolution of 2.3 Å (FWHM). The sample covers a redshift range between 0.005 and 0.03, with a wide range of properties in the color-magnitude diagram, stellar mass, ionization conditions, and morphological types. All the cubes in the data release were reduced with the latest pipeline, which includes improvedspectrophotometric calibration, spatial registration, and spatial resolution. The spectrophotometric calibration is better than 6% and the median spatial resolution is 2.̋4. In total, the second data release contains over 1.5 million spectra. Based on observations collected at the Centro Astronómico Hispano Alemán (CAHA) at Calar Alto, operated jointly by the Max-Planck-Institut für Astronomie (MPIA) and the Instituto de Astrofísica de Andalucía (CSIC).The second data release is available at http://califa.caha.es/DR2

A Local to National Scale Catchment Model Simulation Framework for Hydrological Predictions and Impact Assessments Under Uncertainty

NASA Astrophysics Data System (ADS)

Freer, Jim; Coxon, Gemma; Quinn, Niall; Dunne, Toby; Lane, Rosie; Bates, Paul; Wagener, Thorsten; Woods, Ross; Neal, Jeff; Howden, Nicholas; Musuuza, Jude

2017-04-01

There is a huge challenge in developing hydrological model structures that can be used for hypothesis testing, prediction, impact assessment and risk analyses over a wide range of spatial scales. There are many reasons why this is the case, from computational demands, to how we define and characterize different features and pathway connectivities in the landscape, that differ depending on the objectives of the study. However there is certainly a need more than ever to explore the trade-offs between the complexity of modelling applied (i.e. spatial discretization, levels of process representation, complexity of landscape representation) compared to the benefits realized in terms of predictive capability and robustness of these predictions during hydrological extremes and during change. Furthermore, there is a further balance, particularly associated with prediction uncertainties, in that it is not desirable to have modelling systems that are too complex compared to the observed data that would ever be available to apply them. This is particularly the case when models are applied to quantify national impact assessments, especially if these are based on validation assessments from smaller more detailed case studies. Therefore the hydrological community needs modelling tools and approaches that enable these trade-offs to be explored and to understand the level of representation needed in models to be 'fit-for-purpose' for a given application. This paper presents a catchment scale national modelling framework based on Dynamic-TOPMODEL specifically setup to fulfil these aims. A key component of the modelling framework is it's structural flexibility, as is the ability to assess model outputs using Monte Carlo simulation techniques. The model build has been automated to work at any spatial scale to the national scale, and within that to control the level of spatial discretisation and connectivity of locally accounted landscape elements in the form of hydrological response units (HRU's). This allows for the explicit consideration of spatial rainfall fields, landscape, soils and geological attributes and the spatial connectivity of hydrological flow pathways to explore what level of modelling complexity we need for different prediction problems. We shall present this framework and show how it can be used in flood and drought risk analyses as well as include attributes and features within the landscape to explore societal and climate impacts effectively within an uncertainty analyses framework.

Comparing apples with apples: Using spatially distributed time series of monitoring data for model evaluation

NASA Astrophysics Data System (ADS)

Solazzo, E.; Galmarini, S.

2015-07-01

A more sensible use of monitoring data for the evaluation and development of regional-scale atmospheric models is proposed. The motivation stems from observing current practices in this realm where the quality of monitoring data is seldom questioned and model-to-data deviation is uniquely attributed to model deficiency. Efforts are spent to quantify the uncertainty intrinsic to the measurement process, but aspects connected to model evaluation and development have recently emerged that remain obscure, such as the spatial representativeness and the homogeneity of signals subjects of our investigation. By using time series of hourly records of ozone for a whole year (2006) collected by the European AirBase network the area of representativeness is firstly analysed showing, for similar class of stations (urban, suburban, rural), large heterogeneity and high sensitivity to the density of the network and to the noise of the signal, suggesting the mere station classification to be not a suitable candidate to help select the pool of stations used in model evaluation. Therefore a novel, more robust technique is developed based on the spatial properties of the associativity of the spectral components of the ozone time series, in an attempt to determine the level of homogeneity. The spatial structure of the associativity among stations is informative of the spatial representativeness of that specific component and automatically tells about spatial anisotropy. Time series of ozone data from North American networks have also been analysed to support the methodology. We find that the low energy components (especially the intra-day signal) suffer from a too strong influence of country-level network set-up in Europe, and different networks in North America, showing spatial heterogeneity exactly at the administrative border that separates countries in Europe and at areas separating different networks in North America. For model evaluation purposes these elements should be treated as purely stochastic and discarded, while retaining the portion of the signal useful to the evaluation process. Trans-boundary discontinuity of the intra-day signal along with cross-network grouping has been found to be predominant. Skills of fifteen regional chemical-transport modelling systems have been assessed in light of this result, finding an improved accuracy of up to 5% when the intra-day signal is removed with respect to the case where all components are analysed.

Estimating spatially distributed soil texture using time series of thermal remote sensing - a case study in central Europe

NASA Astrophysics Data System (ADS)

Müller, Benjamin; Bernhardt, Matthias; Jackisch, Conrad; Schulz, Karsten

2016-09-01

For understanding water and solute transport processes, knowledge about the respective hydraulic properties is necessary. Commonly, hydraulic parameters are estimated via pedo-transfer functions using soil texture data to avoid cost-intensive measurements of hydraulic parameters in the laboratory. Therefore, current soil texture information is only available at a coarse spatial resolution of 250 to 1000 m. Here, a method is presented to derive high-resolution (15 m) spatial topsoil texture patterns for the meso-scale Attert catchment (Luxembourg, 288 km2) from 28 images of ASTER (advanced spaceborne thermal emission and reflection radiometer) thermal remote sensing. A principle component analysis of the images reveals the most dominant thermal patterns (principle components, PCs) that are related to 212 fractional soil texture samples. Within a multiple linear regression framework, distributed soil texture information is estimated and related uncertainties are assessed. An overall root mean squared error (RMSE) of 12.7 percentage points (pp) lies well within and even below the range of recent studies on soil texture estimation, while requiring sparser sample setups and a less diverse set of basic spatial input. This approach will improve the generation of spatially distributed topsoil maps, particularly for hydrologic modeling purposes, and will expand the usage of thermal remote sensing products.

Delft Dashboard: a quick setup tool for coastal and estuarine models

NASA Astrophysics Data System (ADS)

Nederhoff, C., III; Van Dongeren, A.; Van Ormondt, M.; Veeramony, J.

2016-02-01

We developed easy-to-use Delft DashBoard (DDB) software for the rapid set-up of coastal and estuarine hydrodynamic and basic morphological numerical models. In the "Model Maker" toolbox, users have the capability to set-up Delft3D models, in a minimal amount of time (in the order of a hour), for any location in the world. DDB draws upon public internet data sources of bathymetry and tidesto construct the model. With additional toolboxes, these models can be forced with parameterized hurricane wind fields, uplift of the sea surface due to tsunamis nested in publically available ocean models and forced with meteo data (wind speed, pressure, temperature) In this presentation we will show the skill of a model which is setup with Delft Dashboard and compare it to well-calibrated benchmark models. These latter models have been set-up using detailed input data and boundary conditions. We have tested the functionality of Delft DashBoard and evaluate the performance and robustness of the DDB model system on a variety of cases, ranging from a coastal to basin models. Furthermore, we have performed a sensitivity study to investigate the most critical physical and numerical processes. The software can benefit operational modellers, as well as scientists and consultants.

Land use patterns and urbanization in the holy city of Varanasi, India: a scenario.

PubMed

Kumar, Manoj; Mukherjee, Nivedita; Sharma, Gyan Prakash; Raghubanshi, A S

2010-08-01

Rapid urbanization and increasing land use changes due to population and economic growth in selected landscapes is being witnessed of late in India and other developing countries. The cities are expanding in all directions resulting in large-scale urban sprawl and changes in urban land use. The spatial pattern of such changes is clearly noticed on the urban fringes or city peripheral rural areas than in the city center. In fact, this is reflected in changing urban land use patterns. There is an urgent need to accurately describe land use changes for planning and sustainable management. In the recent times, remote sensing is gaining importance as vital tool in the analysis and integration of spatial data. This study intends to estimate land use pattern in a planned and unplanned urban setup and also to analyze the impact of change in land use pattern in the Varanasi urban environment. The results indicate that the planned urban setup had a higher tree cover to that of unplanned area in the Varanasi City, although a considerable disparity existed within the planned urban setups. The results emphasize the need to critically review concepts of urban planning and give more consideration to the preservation and management of urban tree cover/greenspace.

Evaluation of a numerical model's ability to predict bed load transport observed in braided river experiments

NASA Astrophysics Data System (ADS)

Javernick, Luke; Redolfi, Marco; Bertoldi, Walter

2018-05-01

New data collection techniques offer numerical modelers the ability to gather and utilize high quality data sets with high spatial and temporal resolution. Such data sets are currently needed for calibration, verification, and to fuel future model development, particularly morphological simulations. This study explores the use of high quality spatial and temporal data sets of observed bed load transport in braided river flume experiments to evaluate the ability of a two-dimensional model, Delft3D, to predict bed load transport. This study uses a fixed bed model configuration and examines the model's shear stress calculations, which are the foundation to predict the sediment fluxes necessary for morphological simulations. The evaluation is conducted for three flow rates, and model setup used highly accurate Structure-from-Motion (SfM) topography and discharge boundary conditions. The model was hydraulically calibrated using bed roughness, and performance was evaluated based on depth and inundation agreement. Model bed load performance was evaluated in terms of critical shear stress exceedance area compared to maps of observed bed mobility in a flume. Following the standard hydraulic calibration, bed load performance was tested for sensitivity to horizontal eddy viscosity parameterization and bed morphology updating. Simulations produced depth errors equal to the SfM inherent errors, inundation agreement of 77-85%, and critical shear stress exceedance in agreement with 49-68% of the observed active area. This study provides insight into the ability of physically based, two-dimensional simulations to accurately predict bed load as well as the effects of horizontal eddy viscosity and bed updating. Further, this study highlights how using high spatial and temporal data to capture the physical processes at work during flume experiments can help to improve morphological modeling.

Constraining regional scale carbon budgets at the US West Coast using a high-resolution atmospheric inverse modeling approach

NASA Astrophysics Data System (ADS)

Goeckede, M.; Michalak, A. M.; Vickers, D.; Turner, D.; Law, B.

2009-04-01

The study presented is embedded within the NACP (North American Carbon Program) West Coast project ORCA2, which aims at determining the regional carbon balance of the US states Oregon, California and Washington. Our work specifically focuses on the effect of disturbance history and climate variability, aiming at improving our understanding of e.g. drought stress and stand age on carbon sources and sinks in complex terrain with fine-scale variability in land cover types. The ORCA2 atmospheric inverse modeling approach has been set up to capture flux variability on the regional scale at high temporal and spatial resolution. Atmospheric transport is simulated coupling the mesoscale model WRF (Weather Research and Forecast) with the STILT (Stochastic Time Inverted Lagrangian Transport) footprint model. This setup allows identifying sources and sinks that influence atmospheric observations with highly resolved mass transport fields and realistic turbulent mixing. Terrestrial biosphere carbon fluxes are simulated at spatial resolutions of up to 1km and subdaily timesteps, considering effects of ecoregion, land cover type and disturbance regime on the carbon budgets. Our approach assimilates high-precision atmospheric CO2 concentration measurements and eddy-covariance data from several sites throughout the model domain, as well as high-resolution remote sensing products (e.g. LandSat, MODIS) and interpolated surface meteorology (DayMet, SOGS, PRISM). We present top-down modeling results that have been optimized using Bayesian inversion, reflecting the information on regional scale carbon processes provided by the network of high-precision CO2 observations. We address the level of detail (e.g. spatial and temporal resolution) that can be resolved by top-down modeling on the regional scale, given the uncertainties introduced by various sources for model-data mismatch. Our results demonstrate the importance of accurate modeling of carbon-water coupling, with the representation of water availability and drought stress playing a dominant role to capture spatially variable CO2 exchange rates in a region characterized by strong climatic gradients.

Infragravity waves on fringing reefs in the tropical Pacific: Dynamic setup

NASA Astrophysics Data System (ADS)

Becker, J. M.; Merrifield, M. A.; Yoon, H.

2016-05-01

Cross-shore pressure and current observations from four fringing reefs of lengths ranging from 135 to 420 m reveal energetic low-frequency (˜0.001-0.05 Hz) motions. The spatial structure and temporal amplitudes of an empirical orthogonal function analysis of the pressure measurements suggest the dominant low-frequency variability is modal. Incoming and outgoing linear flux estimates also support partially standing modes on the reef flat during energetic events. A cross-covariance analysis suggests that breakpoint forcing excites these partially standing modes, similar to previous findings at other steep reefs. The dynamics of Symonds et al. (1982) with damping are applied to a step reef, with forcing obtained by extending a point break model of Vetter et al. (2010) for breaking wave setup to the low-frequency band using the shoaled envelope of the incident free surface elevation. A one parameter, linear analytical model for the reef flat free surface elevation is presented, which describes between 75% and 97% of the variance of the observed low-frequency shoreline significant wave height for all reefs considered over a range of conditions. The linear model contains a single dimensionless parameter that is the ratio of the inertial to dissipative time scales, and the observations from this study exhibit more low-frequency variability when the dissipative time scale is greater than the inertial time scale for the steep reefs considered.

Optimization of a constrained linear monochromator design for neutral atom beams.

PubMed

Kaltenbacher, Thomas

2016-04-01

A focused ground state, neutral atom beam, exploiting its de Broglie wavelength by means of atom optics, is used for neutral atom microscopy imaging. Employing Fresnel zone plates as a lens for these beams is a well established microscopy technique. To date, even for favorable beam source conditions a minimal focus spot size of slightly below 1μm was reached. This limitation is essentially given by the intrinsic spectral purity of the beam in combination with the chromatic aberration of the diffraction based zone plate. Therefore, it is important to enhance the monochromaticity of the beam, enabling a higher spatial resolution, preferably below 100nm. We propose to increase the monochromaticity of a neutral atom beam by means of a so-called linear monochromator set-up - a Fresnel zone plate in combination with a pinhole aperture - in order to gain more than one order of magnitude in spatial resolution. This configuration is known in X-ray microscopy and has proven to be useful, but has not been applied to neutral atom beams. The main result of this work is optimal design parameters based on models for this linear monochromator set-up followed by a second zone plate for focusing. The optimization was performed for minimizing the focal spot size and maximizing the centre line intensity at the detector position for an atom beam simultaneously. The results presented in this work are for, but not limited to, a neutral helium atom beam. Copyright © 2016 Elsevier B.V. All rights reserved.

Dual Etalon Cross Tilt Order Sorted Spectrometer (DECTOSS)

NASA Astrophysics Data System (ADS)

Kumer, John B.; Rairden, Richard L.; Mitchell, Keith E.; Roche, Aidan E.; Mergenthaler, John L.

2002-11-01

The Dual Etalon Cross Tilt Order Sorted Spectrometer (DECTOSS) uses relatively inexpensive off the shelf components in a small and simple package to provide ultra high spectral resolution over a limited spectral range. For example, the modest first try laboratory test setup DECTOSS we describe in this presentation achieves resolving power ~ 105 on a spectral range of about 1 nm centered near 760 nm. This ultra high spectral resolution facilitates some important atmospheric remote sensing applications including profiling cirrus and/or aerosol above bright reflective surfaces in the O2 A-band and the column measurements of CO and CO2 utilizing solar reflectance spectra. We show details of the how the use of ultra high spectral resolution in the O2 A-band improves the profiling of cirrus and aerosol. The DECTOSS utilizes a Narrow Band Spectral Filter (NBSF), a Low Resolution Etalon (LRE) and a High Resolution Etalon (HRE). Light passing through these elements is focused on to a 2 Dimensional Array Detector (2DAD). Off the shelf, solid etalons with airgap or solid spacer gap are used in this application. In its simplest application this setup utilizes a spatially uniform extended source so that spatial and spectral structure are not confused. In this presentation we'll show 2D spectral data obtained in a desktop test configuration, and in the first try laboratory test setup. These were obtained by illuminating a Lambertian screen with (1) monochromatic light, and (2) with atmospheric absorption spectra in the oxygen (O2) A-band. Extracting the 1D spectra from these data is a work in progress and we show preliminary results compared with (1) solar absorption data obtained with a large Echelle grating spectrometer, and (2) theoretical spectra. We point out areas for improvement in our laboratory test setup, and general improvements in spectral range and sensitivity that are planned for our next generation field test setup.

DMI's Baltic Sea Coastal operational forecasting system

NASA Astrophysics Data System (ADS)

Murawski, Jens; Berg, Per; Weismann Poulsen, Jacob

2017-04-01

Operational forecasting is challenged with bridging the gap between the large scales of the driving weather systems and the local, human scales of the model applications. The limit of what can be represented by local model has been continuously shifted to higher and higher spatial resolution, with the aim to better resolve the local dynamic and to make it possible to describe processes that could only be parameterised in older versions, with the ultimate goal to improve the quality of the forecast. Current hardware trends demand a str onger focus on the development of efficient, highly parallelised software and require a refactoring of the code with a solid focus on portable performance. The gained performance can be used for running high resolution model with a larger coverage. Together with the development of efficient two-way nesting routines, this has made it possible to approach the near-coastal zone with model applications that can run in a time effective way. Denmarks Meteorological Institute uses the HBM(1) ocean circulation model for applications that covers the entire Baltic Sea and North Sea with an integrated model set-up that spans the range of horizontal resolution from 1nm for the entire Baltic Sea to approx. 200m resolution in local fjords (Limfjord). For the next model generation, the high resolution set-ups are going to be extended and new high resolution domains in coastal zones are either implemented or tested for operational use. For the first time it will be possible to cover large stretches of the Baltic coastal zone with sufficiently high resolution to model the local hydrodynamic adequately. (1) HBM stands for HIROMB-BOOS-Model, whereas HIROMB stands for "High Resolution Model for the Baltic Sea" and BOOS stands for "Baltic Operational Oceanography System".

State updating of a distributed hydrological model with Ensemble Kalman Filtering: Effects of updating frequency and observation network density on forecast accuracy

NASA Astrophysics Data System (ADS)

Rakovec, O.; Weerts, A.; Hazenberg, P.; Torfs, P.; Uijlenhoet, R.

2012-12-01

This paper presents a study on the optimal setup for discharge assimilation within a spatially distributed hydrological model (Rakovec et al., 2012a). The Ensemble Kalman filter (EnKF) is employed to update the grid-based distributed states of such an hourly spatially distributed version of the HBV-96 model. By using a physically based model for the routing, the time delay and attenuation are modelled more realistically. The discharge and states at a given time step are assumed to be dependent on the previous time step only (Markov property). Synthetic and real world experiments are carried out for the Upper Ourthe (1600 km2), a relatively quickly responding catchment in the Belgian Ardennes. The uncertain precipitation model forcings were obtained using a time-dependent multivariate spatial conditional simulation method (Rakovec et al., 2012b), which is further made conditional on preceding simulations. We assess the impact on the forecasted discharge of (1) various sets of the spatially distributed discharge gauges and (2) the filtering frequency. The results show that the hydrological forecast at the catchment outlet is improved by assimilating interior gauges. This augmentation of the observation vector improves the forecast more than increasing the updating frequency. In terms of the model states, the EnKF procedure is found to mainly change the pdfs of the two routing model storages, even when the uncertainty in the discharge simulations is smaller than the defined observation uncertainty. Rakovec, O., Weerts, A. H., Hazenberg, P., Torfs, P. J. J. F., and Uijlenhoet, R.: State updating of a distributed hydrological model with Ensemble Kalman Filtering: effects of updating frequency and observation network density on forecast accuracy, Hydrol. Earth Syst. Sci. Discuss., 9, 3961-3999, doi:10.5194/hessd-9-3961-2012, 2012a. Rakovec, O., Hazenberg, P., Torfs, P. J. J. F., Weerts, A. H., and Uijlenhoet, R.: Generating spatial precipitation ensembles: impact of temporal correlation structure, Hydrol. Earth Syst. Sci. Discuss., 9, 3087-3127, doi:10.5194/hessd-9-3087-2012, 2012b.

Barnes Maze Procedure for Spatial Learning and Memory in Mice.

PubMed

Pitts, Matthew W

2018-03-05

The Barnes maze is a dry-land based rodent behavioral paradigm for assessing spatial learning and memory that was originally developed by its namesake, Carol Barnes. It represents a well-established alternative to the more popular Morris Water maze and offers the advantage of being free from the potentially confounding influence of swimming behavior. Herein, the Barnes maze experimental setup and corresponding procedures for testing and analysis in mice are described in detail.

Quantum random number generator based on quantum nature of vacuum fluctuations

NASA Astrophysics Data System (ADS)

Ivanova, A. E.; Chivilikhin, S. A.; Gleim, A. V.

2017-11-01

Quantum random number generator (QRNG) allows obtaining true random bit sequences. In QRNG based on quantum nature of vacuum, optical beam splitter with two inputs and two outputs is normally used. We compare mathematical descriptions of spatial beam splitter and fiber Y-splitter in the quantum model for QRNG, based on homodyne detection. These descriptions were identical, that allows to use fiber Y-splitters in practical QRNG schemes, simplifying the setup. Also we receive relations between the input radiation and the resulting differential current in homodyne detector. We experimentally demonstrate possibility of true random bits generation by using QRNG based on homodyne detection with Y-splitter.

Thermal magnetic field noise: electron optics and decoherence.

PubMed

Uhlemann, Stephan; Müller, Heiko; Zach, Joachim; Haider, Max

2015-04-01

Thermal magnetic field noise from magnetic and non-magnetic conductive parts close to the electron beam recently has been identified as a reason for decoherence in high-resolution transmission electron microscopy (TEM). Here, we report about new experimental results from measurements for a layered structure of magnetic and non-magnetic materials. For a simplified version of this setup and other situations we derive semi-analytical models in order to predict the strength, bandwidth and spatial correlation of the noise fields. The results of the simulations are finally compared to previous and new experimental data in a quantitative manner. Copyright © 2014 Elsevier B.V. All rights reserved.

Effect diffraction on a viewed object has on improvement of object optical image quality in a turbulent medium

NASA Astrophysics Data System (ADS)

Banakh, Viktor A.; Sazanovich, Valentina M.; Tsvik, Ruvim S.

1997-09-01

The influence of diffraction on the object, coherently illuminated and viewed through a random medium from the same point, on the image quality betterment caused by the counter wave correlation is studied experimentally. The measurements were carried out with the use of setup modeling artificial convective turbulence. It is shown that in the case of spatially limited reflector with the Fresnel number of the reflector surface radius r ranging from 3 to 12 the contribution of the counter wave correlation into image intensity distribution is maximal as compared with the point objects (r U.

Towards improved hydrologic predictions using data assimilation techniques for water resource management at the continental scale

NASA Astrophysics Data System (ADS)

Naz, Bibi; Kurtz, Wolfgang; Kollet, Stefan; Hendricks Franssen, Harrie-Jan; Sharples, Wendy; Görgen, Klaus; Keune, Jessica; Kulkarni, Ketan

2017-04-01

More accurate and reliable hydrologic simulations are important for many applications such as water resource management, future water availability projections and predictions of extreme events. However, simulation of spatial and temporal variations in the critical water budget components such as precipitation, snow, evaporation and runoff is highly uncertain, due to errors in e.g. model structure and inputs (hydrologic parameters and forcings). In this study, we use data assimilation techniques to improve the predictability of continental-scale water fluxes using in-situ measurements along with remotely sensed information to improve hydrologic predications for water resource systems. The Community Land Model, version 3.5 (CLM) integrated with the Parallel Data Assimilation Framework (PDAF) was implemented at spatial resolution of 1/36 degree (3 km) over the European CORDEX domain. The modeling system was forced with a high-resolution reanalysis system COSMO-REA6 from Hans-Ertel Centre for Weather Research (HErZ) and ERA-Interim datasets for time period of 1994-2014. A series of data assimilation experiments were conducted to assess the efficiency of assimilation of various observations, such as river discharge data, remotely sensed soil moisture, terrestrial water storage and snow measurements into the CLM-PDAF at regional to continental scales. This setup not only allows to quantify uncertainties, but also improves streamflow predictions by updating simultaneously model states and parameters utilizing observational information. The results from different regions, watershed sizes, spatial resolutions and timescales are compared and discussed in this study.

A spatially-variant deconvolution method based on total variation for optical coherence tomography images

NASA Astrophysics Data System (ADS)

Almasganj, Mohammad; Adabi, Saba; Fatemizadeh, Emad; Xu, Qiuyun; Sadeghi, Hamid; Daveluy, Steven; Nasiriavanaki, Mohammadreza

2017-03-01

Optical Coherence Tomography (OCT) has a great potential to elicit clinically useful information from tissues due to its high axial and transversal resolution. In practice, an OCT setup cannot reach to its theoretical resolution due to imperfections of its components, which make its images blurry. The blurriness is different alongside regions of image; thus, they cannot be modeled by a unique point spread function (PSF). In this paper, we investigate the use of solid phantoms to estimate the PSF of each sub-region of imaging system. We then utilize Lucy-Richardson, Hybr and total variation (TV) based iterative deconvolution methods for mitigating occurred spatially variant blurriness. It is shown that the TV based method will suppress the so-called speckle noise in OCT images better than the two other approaches. The performance of proposed algorithm is tested on various samples, including several skin tissues besides the test image blurred with synthetic PSF-map, demonstrating qualitatively and quantitatively the advantage of TV based deconvolution method using spatially-variant PSF for enhancing image quality.

Users guide for the hydroacoustic coverage assessment model (HydroCAM)

DOE Office of Scientific and Technical Information (OSTI.GOV)

Farrell, T., LLNL

1997-12-01

A model for predicting the detection and localization performance of hydroacoustic monitoring networks has been developed. The model accounts for major factors affecting global-scale acoustic propagation in the ocean. including horizontal refraction, travel time variability due to spatial and temporal fluctuations in the ocean, and detailed characteristics of the source. Graphical user interfaces are provided to setup the models and visualize the results. The model produces maps of network detection coverage and localization area of uncertainty, as well as intermediate results such as predicted path amplitudes, travel time and travel time variance. This Users Guide for the model is organizedmore » into three sections. First a summary of functionality available in the model is presented, including example output products. The second section provides detailed descriptions of each of models contained in the system. The last section describes how to run the model, including a summary of each data input form in the user interface.« less

From Dynamic Global Vegetation Modelling to Real-World regional and local Application

NASA Astrophysics Data System (ADS)

Steinkamp, J.; Forrest, M.; Kamm, K.; Leiblein-Wild, M.; Pachzelt, A.; Werner, C.; Hickler, T.

2015-12-01

Dynamic (global) vegetation models (DGVM) can be applied to any spatial resolution on the local, national, continental and global scale given suitable climatic and geographic input forcing data. LPJ-GUESS, the main DGVM applied in our research group, uses the plant functional type (PFT) concept in the global setup with typically about 10-20 tree PFTs (subdivided into tropical, temperate and boreal) and two herbaceous PFTs by default. When modelling smaller spatial extents, such as continental (e.g. Europe/North America) national domains, or individual sites (e.g. Frankfurt, Germany), i.e. the scale of decision making, it becomes necessary to refine the PFT representation, the model initialization and validation and, in some case, to include additional processes. I will present examples of LPJ-GUESS applications at the continental to local scale performed by our working group including i.) a European simulation representing the main tree species and Mediterranean shrubs, ii.) a climate impact study for Turkey, iii.) coupled dynamic large grazer-vegetation modelling across Africa and, iv.) modelling an allergenic and in Europe invasive shrub (Ambrosia artemisiifolia), iv.) simulating water usage by an oak-pine forest stand near Frankfurt, and v.) stand specific differences in modelling at the FACE sites. Finally, I will present some thoughts on how to advance the models in terms of more detailed and realistic PFT or species parameterizations accounting for adaptive functional trait responses also within species.

Proof of principle study of the use of a CMOS active pixel sensor for proton radiography.

PubMed

Seco, Joao; Depauw, Nicolas

2011-02-01

Proof of principle study of the use of a CMOS active pixel sensor (APS) in producing proton radiographic images using the proton beam at the Massachusetts General Hospital (MGH). A CMOS APS, previously tested for use in s-ray radiation therapy applications, was used for proton beam radiographic imaging at the MGH. Two different setups were used as a proof of principle that CMOS can be used as proton imaging device: (i) a pen with two metal screws to assess spatial resolution of the CMOS and (ii) a phantom with lung tissue, bone tissue, and water to assess tissue contrast of the CMOS. The sensor was then traversed by a double scattered monoenergetic proton beam at 117 MeV, and the energy deposition inside the detector was recorded to assess its energy response. Conventional x-ray images with similar setup at voltages of 70 kVp and proton images using commercial Gafchromic EBT 2 and Kodak X-Omat V films were also taken for comparison purposes. Images were successfully acquired and compared to x-ray kVp and proton EBT2/X-Omat film images. The spatial resolution of the CMOS detector image is subjectively comparable to the EBT2 and Kodak X-Omat V film images obtained at the same object-detector distance. X-rays have apparent higher spatial resolution than the CMOS. However, further studies with different commercial films using proton beam irradiation demonstrate that the distance of the detector to the object is important to the amount of proton scatter contributing to the proton image. Proton images obtained with films at different distances from the source indicate that proton scatter significantly affects the CMOS image quality. Proton radiographic images were successfully acquired at MGH using a CMOS active pixel sensor detector. The CMOS demonstrated spatial resolution subjectively comparable to films at the same object-detector distance. Further work will be done in order to establish the spatial and energy resolution of the CMOS detector for protons. The development and use of CMOS in proton radiography could allow in vivo proton range checks, patient setup QA, and real-time tumor tracking.

Temporal Dynamics and Persistence of Spatial Patterns: from Groundwater to Soil Moisture to Transpiration

NASA Astrophysics Data System (ADS)

Blume, T.; Hassler, S. K.; Weiler, M.

2017-12-01

Hydrological science still struggles with the fact that while we wish for spatially continuous images or movies of state variables and fluxes at the landscape scale, most of our direct measurements are point measurements. To date regional measurements resolving landscape scale patterns can only be obtained by remote sensing methods, with the common drawback that they remain near the earth surface and that temporal resolution is generally low. However, distributed monitoring networks at the landscape scale provide the opportunity for detailed and time-continuous pattern exploration. Even though measurements are spatially discontinuous, the large number of sampling points and experimental setups specifically designed for the purpose of landscape pattern investigation open up new avenues of regional hydrological analyses. The CAOS hydrological observatory in Luxembourg offers a unique setup to investigate questions of temporal stability, pattern evolution and persistence of certain states. The experimental setup consists of 45 sensor clusters. These sensor clusters cover three different geologies, two land use classes, five different landscape positions, and contrasting aspects. At each of these sensor clusters three soil moisture/soil temperature profiles, basic climate variables, sapflow, shallow groundwater, and stream water levels were measured continuously for the past 4 years. We will focus on characteristic landscape patterns of various hydrological state variables and fluxes, studying their temporal stability on the one hand and the dependence of patterns on hydrological states on the other hand (e.g. wet vs dry). This is extended to time-continuous pattern analysis based on time series of spatial rank correlation coefficients. Analyses focus on the absolute values of soil moisture, soil temperature, groundwater levels and sapflow, but also investigate the spatial pattern of the daily changes of these variables. The analysis aims at identifying hydrologic signatures of the processes or landscape characteristics acting as major controls. While groundwater, soil water and transpiration are closely linked by the water cycle, they are controlled by different processes and we expect this to be reflected in interlinked but not necessarily congruent patterns and responses.

A High-Performance Cellular Automaton Model of Tumor Growth with Dynamically Growing Domains

PubMed Central

Poleszczuk, Jan; Enderling, Heiko

2014-01-01

Tumor growth from a single transformed cancer cell up to a clinically apparent mass spans many spatial and temporal orders of magnitude. Implementation of cellular automata simulations of such tumor growth can be straightforward but computing performance often counterbalances simplicity. Computationally convenient simulation times can be achieved by choosing appropriate data structures, memory and cell handling as well as domain setup. We propose a cellular automaton model of tumor growth with a domain that expands dynamically as the tumor population increases. We discuss memory access, data structures and implementation techniques that yield high-performance multi-scale Monte Carlo simulations of tumor growth. We discuss tumor properties that favor the proposed high-performance design and present simulation results of the tumor growth model. We estimate to which parameters the model is the most sensitive, and show that tumor volume depends on a number of parameters in a non-monotonic manner. PMID:25346862

DOE Office of Scientific and Technical Information (OSTI.GOV)

Liu, Derek; Mutanga, Theodore

Purpose: An end-to-end testing methodology was designed to evaluate the overall SRS treatment fidelity, incorporating all steps in the linac-based frameless radiosurgery treatment delivery process. The study details our commissioning experience of the Steev (CIRS, Norfolk, VA) stereotactic anthropomorphic head phantom including modification, test design, and baseline measurements. Methods: Repeated MR and CT scans were performed with interchanging inserts. MR-CT fusion accuracy was evaluated and the insert spatial coincidence was verified on CT. Five non-coplanar arcs delivered a prescription dose to a 15 mm spherical CTV with 2 mm PTV margin. Following setup, CBCT-based shifts were applied as per protocol.more » Sequential measurements were performed by interchanging inserts without disturbing the setup. Spatial and dosimetric accuracy was assessed by a combination of CBCT hidden target, radiochromic film, and ion chamber measurements. To facilitate film registration, the film insert was modified in-house by etching marks. Results: MR fusion error and insert spatial coincidences were within 0.3 mm. Both CBCT and film measurements showed spatial displacements of 1.0 mm in similar directions. Both coronal and sagittal films reported 2.3 % higher target dose relative to the treatment plan. The corrected ion chamber measurement was similarly greater by 1.0 %. The 3 %/2 mm gamma pass rate was 99% for both films Conclusions: A comprehensive end-to-end testing methodology was implemented for our SRS QA program. The Steev phantom enabled realistic evaluation of the entire treatment process. Overall spatial and dosimetric accuracy of the delivery were 1 mm and 3 % respectively.« less

[Analysis of Cr in soil by LIBS based on conical spatial confinement of plasma].

PubMed

Lin, Yong-Zeng; Yao, Ming-Yin; Chen, Tian-Bing; Li, Wen-Bing; Zheng, Mei-Lan; Xu, Xue-Hong; Tu, Jian-Ping; Liu, Mu-Hua

2013-11-01

The present study is to improve the sensitivity of detection and reduce the limit of detection in detecting heavy metal of soil by laser induced breakdown spectroscopy (LIBS). The Cr element of national standard soil was regarded as the research object. In the experiment, a conical cavity with small diameter end of 20 mm and large diameter end of 45 mm respectively was installed below the focusing lens near the experiment sample to mainly confine the signal transmitted by plasma and to some extent to confine the plasma itself in the LIBS setup. In detecting Cr I 425.44 nm, the beast delay time gained from experiment is 1.3 micros, and the relative standard deviation is below 10%. Compared with the setup of non-spatial confinement, the spectral intensity of Cr in the soil sample was enhanced more than 7%. Calibration curve was established in the Cr concentration range from 60 to 400 microg x g(-1). Under the condition of spatial confinement, the liner regression coefficient and the limit of detection were 0.997 71 and 18.85 microg x g(-1) respectively, however, the regression coefficient and the limit of detection were 0.991 22 and 36.99 microg x g(-1) without spatial confinement. So, this shows that conical spatial confinement can/improve the sensitivity of detection and enhance the spectral intensity. And it is a good auxiliary function in detecting Cr in the soil by laser induced breakdown spectroscopy.

Electron energy loss spectroscopy on semiconductor heterostructures for optoelectronics and photonics applications.

PubMed

Eljarrat, A; López-Conesa, L; Estradé, S; Peiró, F

2016-05-01

In this work, we present characterization methods for the analysis of nanometer-sized devices, based on silicon and III-V nitride semiconductor materials. These methods are devised in order to take advantage of the aberration corrected scanning transmission electron microscope, equipped with a monochromator. This set-up ensures the necessary high spatial and energy resolution for the characterization of the smallest structures. As with these experiments, we aim to obtain chemical and structural information, we use electron energy loss spectroscopy (EELS). The low-loss region of EELS is exploited, which features fundamental electronic properties of semiconductor materials and facilitates a high data throughput. We show how the detailed analysis of these spectra, using theoretical models and computational tools, can enhance the analytical power of EELS. In this sense, initially, results from the model-based fit of the plasmon peak are presented. Moreover, the application of multivariate analysis algorithms to low-loss EELS is explored. Finally, some physical limitations of the technique, such as spatial delocalization, are mentioned. © 2015 The Authors Journal of Microscopy © 2015 Royal Microscopical Society.

Linear perturbations in spherically symmetric dust cosmologies including a cosmological constant

NASA Astrophysics Data System (ADS)

Meyer, Sven; Bartelmann, Matthias

2017-12-01

We study the dynamical behaviour of gauge-invariant linear perturbations in spherically symmetric dust cosmologies including a cosmological constant. In contrast to spatially homogeneous FLRW models, the reduced degree of spatial symmetry causes a non-trivial dynamical coupling of gauge-invariant quantities already at first order perturbation theory and the strength and influence of this coupling on the spacetime evolution is investigated here. We present results on the underlying dynamical equations augmented by a cosmological constant and integrate them numerically. We also present a method to derive cosmologically relevant initial variables for this setup. Estimates of angular power spectra for each metric variable are computed and evaluated on the central observer's past null cone. By comparing the full evolution to the freely evolved initial profiles, the coupling strength will be determined for a best fit radially inhomogeneous patch obtained in previous works (see [1]). We find that coupling effects are not noticeable within the cosmic variance limit and can therefore safely be neglected for a relevant cosmological scenario. On the contrary, we find very strong coupling effects in a best fit spherical void model matching the distance redshift relation of SNe which is in accordance with previous findings using parametric void models.

Real-time and sub-wavelength ultrafast coherent diffraction imaging in the extreme ultraviolet.

PubMed

Zürch, M; Rothhardt, J; Hädrich, S; Demmler, S; Krebs, M; Limpert, J; Tünnermann, A; Guggenmos, A; Kleineberg, U; Spielmann, C

2014-12-08

Coherent Diffraction Imaging is a technique to study matter with nanometer-scale spatial resolution based on coherent illumination of the sample with hard X-ray, soft X-ray or extreme ultraviolet light delivered from synchrotrons or more recently X-ray Free-Electron Lasers. This robust technique simultaneously allows quantitative amplitude and phase contrast imaging. Laser-driven high harmonic generation XUV-sources allow table-top realizations. However, the low conversion efficiency of lab-based sources imposes either a large scale laser system or long exposure times, preventing many applications. Here we present a lensless imaging experiment combining a high numerical aperture (NA = 0.8) setup with a high average power fibre laser driven high harmonic source. The high flux and narrow-band harmonic line at 33.2 nm enables either sub-wavelength spatial resolution close to the Abbe limit (Δr = 0.8λ) for long exposure time, or sub-70 nm imaging in less than one second. The unprecedented high spatial resolution, compactness of the setup together with the real-time capability paves the way for a plethora of applications in fundamental and life sciences.

The Effect of Vegetation on Sea-Swell Waves, Infragravity Waves and Wave-Induced Setup

NASA Astrophysics Data System (ADS)

Roelvink, J. A.; van Rooijen, A.; McCall, R. T.; Van Dongeren, A.; Reniers, A.; van Thiel de Vries, J.

2016-02-01

Aquatic vegetation in the coastal zone (e.g. mangrove trees) attenuates wave energy and thereby reduces flood risk along many shorelines worldwide. However, in addition to the attenuation of incident-band (sea-swell) waves, vegetation may also affect infragravity-band (IG) waves and the wave-induced water level setup (in short: wave setup). Currently, knowledge on the effect of vegetation on IG waves and wave setup is lacking, while they are they are key parameters for coastal risk assessment. In this study, the process-based storm impact model XBeach was extended with formulations for attenuation of sea-swell and IG waves as well as the effect on the wave setup, in two modes: the sea-swell wave phase-resolving (non-hydrostatic) and the phase-averaged (surfbeat) mode. In surfbeat mode a wave shape model was implemented to estimate the wave phase and to capture the intra-wave scale effect of emergent vegetation and nonlinear waves on the wave setup. Both modeling modes were validated using data from two flume experiments and show good skill in computing the attenuation of both sea-swell and IG waves as well as the effect on the wave-induced water level setup. In surfbeat mode, the prediction of nearshore mean water levels greatly improved when using the wave shape model, while in non-hydrostatic mode this effect is directly accounted for. Subsequently, the model was used to study the influence of the bottom profile slope and the location of the vegetation field on the computed wave setup with and without vegetation. It was found that the reduction is wave setup is strongly related to the location of vegetation relative to the wave breaking point, and that the wave setup is lower for milder slopes. The extended version of XBeach developed within this study can be used to study the nearshore hydrodynamics on coasts fronted by vegetation such as mangroves. It can also serve as tool for storm impact studies on coasts with aquatic vegetation, and can help to quantify the coastal protection function of vegetation.

3D near-infrared imaging based on a single-photon avalanche diode array sensor

NASA Astrophysics Data System (ADS)

Mata Pavia, Juan; Wolf, Martin; Charbon, Edoardo

2012-10-01

Near-infrared light can be used to determine the optical properties (absorption and scattering) of human tissue. Optical tomography uses this principle to image the internal structure of parts of the body by measuring the light that is scattered in the tissue. An imager for optical tomography was designed based on a detector with 128x128 single photon pixels that included a bank of 32 time-to-digital converters. Due to the high spatial resolution and the possibility of performing time resolved measurements, a new contactless setup has been conceived. The setup has a resolution of 97ps and operates with a laser source with an average power of 3mW. This new setup generated an high amount of data that could not be processed by established methods, therefore new concepts and algorithms were developed to take advantage of it. Simulations show that the potential resolution of the new setup would be much higher than previous designs. Measurements have been performed showing its potential. Images derived from the measurements showed that it is possible to reach a resolution of at least 5mm.

Cluster secondary ion mass spectrometry microscope mode mass spectrometry imaging.

PubMed

Kiss, András; Smith, Donald F; Jungmann, Julia H; Heeren, Ron M A

2013-12-30

Microscope mode imaging for secondary ion mass spectrometry is a technique with the promise of simultaneous high spatial resolution and high-speed imaging of biomolecules from complex surfaces. Technological developments such as new position-sensitive detectors, in combination with polyatomic primary ion sources, are required to exploit the full potential of microscope mode mass spectrometry imaging, i.e. to efficiently push the limits of ultra-high spatial resolution, sample throughput and sensitivity. In this work, a C60 primary source was combined with a commercial mass microscope for microscope mode secondary ion mass spectrometry imaging. The detector setup is a pixelated detector from the Medipix/Timepix family with high-voltage post-acceleration capabilities. The system's mass spectral and imaging performance is tested with various benchmark samples and thin tissue sections. The high secondary ion yield (with respect to 'traditional' monatomic primary ion sources) of the C60 primary ion source and the increased sensitivity of the high voltage detector setup improve microscope mode secondary ion mass spectrometry imaging. The analysis time and the signal-to-noise ratio are improved compared with other microscope mode imaging systems, all at high spatial resolution. We have demonstrated the unique capabilities of a C60 ion microscope with a Timepix detector for high spatial resolution microscope mode secondary ion mass spectrometry imaging. Copyright © 2013 John Wiley & Sons, Ltd.

Dynamic Time Multiplexing Fabrication of Holographic Polymer Dispersed Liquid Crystals for Increased Wavelength Sensitivity

NASA Technical Reports Server (NTRS)

Fontecchio, Adam K. (Inventor); Rai, Kashma (Inventor)

2017-01-01

Described herein is a new holographic polymer dispersed liquid crystal (HPDLC) medium with broadband reflective properties, and a new technique for fabrication of broadband HPDLC mediums. The new technique involves dynamic variation of the holography setup during HPDLC formation, enabling the broadening of the HPDLC medium's wavelength response. Dynamic variation of the holography setup may include the rotation and/or translation of one or more motorized stages, allowing for time and spatial, or angular, multiplexing through variation of the incident angles of one or more laser beams on a pre-polymer mixture during manufacture. An HPDLC medium manufactured using these techniques exhibits improved optical response by reflecting a broadband spectrum of wavelengths. A new broadband holographic polymer dispersed liquid crystal thin film polymeric mirror stack with electrically-switchable beam steering capability is disclosed. XXXX Described herein is a new holographic polymer dispersed liquid crystal (HPDLC) medium with broadband reflective properties, and a new technique for fabrication of broadband 10 HPDLC mediums. The new technique involves dynamic variation of the holography setup during HPDLC formation, enabling the broadening of the HPDLC medium's wavelength response. Dynamic variation of the holography setup may include the rotation and/or translation of one or more 15 motorized stages, allowing for time and spatial, or angular, multiplexing through variation of the incident angles of one or more laser beams on a pre-polymer mixture during manufacture. An HPDLC medium manufactured using these techniques exhibits improved optical response by reflecting 20 a broadband spectrum of wavelengths. A new broadband holographic polymer dispersed liquid crystal thin film polymeric mirror stack with electrically switchable beam steering capability is disclosed.

Hebbian Plasticity Realigns Grid Cell Activity with External Sensory Cues in Continuous Attractor Models

PubMed Central

Mulas, Marcello; Waniek, Nicolai; Conradt, Jörg

2016-01-01

After the discovery of grid cells, which are an essential component to understand how the mammalian brain encodes spatial information, three main classes of computational models were proposed in order to explain their working principles. Amongst them, the one based on continuous attractor networks (CAN), is promising in terms of biological plausibility and suitable for robotic applications. However, in its current formulation, it is unable to reproduce important electrophysiological findings and cannot be used to perform path integration for long periods of time. In fact, in absence of an appropriate resetting mechanism, the accumulation of errors over time due to the noise intrinsic in velocity estimation and neural computation prevents CAN models to reproduce stable spatial grid patterns. In this paper, we propose an extension of the CAN model using Hebbian plasticity to anchor grid cell activity to environmental landmarks. To validate our approach we used as input to the neural simulations both artificial data and real data recorded from a robotic setup. The additional neural mechanism can not only anchor grid patterns to external sensory cues but also recall grid patterns generated in previously explored environments. These results might be instrumental for next generation bio-inspired robotic navigation algorithms that take advantage of neural computation in order to cope with complex and dynamic environments. PMID:26924979

SU-E-J-88: The Study of Setup Error Measured by CBCT in Postoperative Radiotherapy for Cervical Carcinoma

DOE Office of Scientific and Technical Information (OSTI.GOV)

Runxiao, L; Aikun, W; Xiaomei, F

2015-06-15

Purpose: To compare two registration methods in the CBCT guided radiotherapy for cervical carcinoma, analyze the setup errors and registration methods, determine the margin required for clinical target volume(CTV) extending to planning target volume(PTV). Methods: Twenty patients with cervical carcinoma were enrolled. All patients were underwent CT simulation in the supine position. Transfering the CT images to the treatment planning system and defining the CTV, PTV and the organs at risk (OAR), then transmit them to the XVI workshop. CBCT scans were performed before radiotherapy and registered to planning CT images according to bone and gray value registration methods. Comparedmore » two methods and obtain left-right(X), superior-inferior(Y), anterior-posterior (Z) setup errors, the margin required for CTV to PTV were calculated. Results: Setup errors were unavoidable in postoperative cervical carcinoma irradiation. The setup errors measured by method of bone (systemic ± random) on X(1eft.right),Y(superior.inferior),Z(anterior.posterior) directions were(0.24±3.62),(0.77±5.05) and (0.13±3.89)mm, respectively, the setup errors measured by method of grey (systemic ± random) on X(1eft-right), Y(superior-inferior), Z(anterior-posterior) directions were(0.31±3.93), (0.85±5.16) and (0.21±4.12)mm, respectively.The spatial distributions of setup error was maximum in Y direction. The margins were 4 mm in X axis, 6 mm in Y axis, 4 mm in Z axis respectively.These two registration methods were similar and highly recommended. Conclusion: Both bone and grey registration methods could offer an accurate setup error. The influence of setup errors of a PTV margin would be suggested by 4mm, 4mm and 6mm on X, Y and Z directions for postoperative radiotherapy for cervical carcinoma.« less

High resolution modelling of soil moisture patterns with TerrSysMP: A comparison with sensor network data

NASA Astrophysics Data System (ADS)

Gebler, S.; Hendricks Franssen, H.-J.; Kollet, S. J.; Qu, W.; Vereecken, H.

2017-04-01

The prediction of the spatial and temporal variability of land surface states and fluxes with land surface models at high spatial resolution is still a challenge. This study compares simulation results using TerrSysMP including a 3D variably saturated groundwater flow model (ParFlow) coupled to the Community Land Model (CLM) of a 38 ha managed grassland head-water catchment in the Eifel (Germany), with soil water content (SWC) measurements from a wireless sensor network, actual evapotranspiration recorded by lysimeters and eddy covariance stations and discharge observations. TerrSysMP was discretized with a 10 × 10 m lateral resolution, variable vertical resolution (0.025-0.575 m), and the following parameterization strategies of the subsurface soil hydraulic parameters: (i) completely homogeneous, (ii) homogeneous parameters for different soil horizons, (iii) different parameters for each soil unit and soil horizon and (iv) heterogeneous stochastic realizations. Hydraulic conductivity and Mualem-Van Genuchten parameters in these simulations were sampled from probability density functions, constructed from either (i) soil texture measurements and Rosetta pedotransfer functions (ROS), or (ii) estimated soil hydraulic parameters by 1D inverse modelling using shuffle complex evolution (SCE). The results indicate that the spatial variability of SWC at the scale of a small headwater catchment is dominated by topography and spatially heterogeneous soil hydraulic parameters. The spatial variability of the soil water content thereby increases as a function of heterogeneity of soil hydraulic parameters. For lower levels of complexity, spatial variability of the SWC was underrepresented in particular for the ROS-simulations. Whereas all model simulations were able to reproduce the seasonal evapotranspiration variability, the poor discharge simulations with high model bias are likely related to short-term ET dynamics and the lack of information about bedrock characteristics and an on-site drainage system in the uncalibrated model. In general, simulation performance was better for the SCE setups. The SCE-simulations had a higher inverse air entry parameter resulting in SWC dynamics in better correspondence with data than the ROS simulations during dry periods. This illustrates that small scale measurements of soil hydraulic parameters cannot be transferred to the larger scale and that interpolated 1D inverse parameter estimates result in an acceptable performance for the catchment.

Estimating Setup of Driven Piles into Louisiana Clayey Soils

DOT National Transportation Integrated Search

2009-11-15

Two types of mathematical models for pile setup prediction, the Skov-Denver model and the newly developed rate-based model, have been established from all the dynamic and static testing data, including restrikes of the production piles, restrikes, st...

Estimating setup of driven piles into Louisiana clayey soils.

DOT National Transportation Integrated Search

2010-11-15

Two types of mathematical models for pile setup prediction, the Skov-Denver model and the newly developed rate-based model, have been established from all the dynamic and static testing data, including restrikes of the production piles, restrikes, st...

X-ray penumbral imaging diagnostic developments at the National Ignition Facility

NASA Astrophysics Data System (ADS)

Bachmann, B.; Abu-Shawareb, H.; Alexander, N.; Ayers, J.; Bailey, C. G.; Bell, P.; Benedetti, L. R.; Bradley, D.; Collins, G.; Divol, L.; Döppner, T.; Felker, S.; Field, J.; Forsman, A.; Galbraith, J. D.; Hardy, C. M.; Hilsabeck, T.; Izumi, N.; Jarrot, C.; Kilkenny, J.; Kramer, S.; Landen, O. L.; Ma, T.; MacPhee, A.; Masters, N.; Nagel, S. R.; Pak, A.; Patel, P.; Pickworth, L. A.; Ralph, J. E.; Reed, C.; Rygg, J. R.; Thorn, D. B.

2017-08-01

X-ray penumbral imaging has been successfully fielded on a variety of inertial confinement fusion (ICF) capsule implosion experiments on the National Ignition Facility (NIF). We have demonstrated sub-5 μm resolution imaging of stagnated plasma cores (hot spots) at x-ray energies from 6 to 30 keV. These measurements are crucial for improving our understanding of the hot deuterium-tritium fuel assembly, which can be affected by various mechanisms, including complex 3-D perturbations caused by the support tent, fill tube or capsule surface roughness. Here we present the progress on several approaches to improve x-ray penumbral imaging experiments on the NIF. We will discuss experimental setups that include penumbral imaging from multiple lines-of-sight, target mounted penumbral apertures and variably filtered penumbral images. Such setups will improve the signal-to-noise ratio and the spatial imaging resolution, with the goal of enabling spatially resolved measurements of the hot spot electron temperature and material mix in ICF implosions.

Passive microlesion detection and mapping for treatment of hypertrophic cardiomyopathy

NASA Astrophysics Data System (ADS)

Zhu, Yiying I.; Miller, Douglas L.; Dou, Chunyan; Kripfgans, Oliver D.

2017-03-01

Intermittent high intensity ultrasound pulses with circulating contrast agent microbubbles can induce scattered microlesions of potential value for myocardial reduction therapy. This paper presents an in vitro setup imitating the treatment for monitoring development. A preclinical imaging system with a single element transducer, synchronization and receive-only imaging transducer array has been implemented on a research platform. Contrast agent microbubbles pumped in a dialysis tubing setup were exposed to high intensity focused ultrasound at 1.0/3.5 MHz center frequencies. Polystyrene spheres were employed as linear scatterers compared to contrast agents for system transfer function equalization. A cavitation mapping technique was employed to spatially locate and depict microbubble activity during treatment. For high acoustic pressure amplitudes a 5 dB difference between contrast agent and solid spheres was observed and spatially mapped. The in-plane resolution was 4.5 mm for axial and 1.5 mm laterally. In the future, this cavitation detection scheme will be applied to monitor in vivo microlesioning in real-time.

All-Solid-State UV Transmitter Development for Ozone Sensing Applications

NASA Technical Reports Server (NTRS)

Prasad, Narasimha S.; Singh, Upendra N.; Armstrong, Darrell Jr.

2009-01-01

In this paper, recent progress made in the development of an all-solid-state UV transmitter suitable for ozone sensing applications from space based platforms is discussed. A nonlinear optics based UV setup based on Rotated Image Singly Resonant Twisted Rectangle (RISTRA) optical parametric oscillator (OPO) module was effectively coupled to a diode pumped, single longitudinal mode, conductively cooled, short-pulsed, high-energy Nd:YAG laser operating at 1064 nm with 50 Hz PRF. An estimated 10 mJ/pulse with 10% conversion efficiency at 320 nm has been demonstrated limited only by the pump pulse spatial profile. The current arrangement has the potential for obtaining greater than 200 mJ/pulse. Previously, using a flash-lamp pumped Nd:YAG laser with round, top-hat profile, up to 24% IR-UV conversion efficiency was achieved with the same UV module. Efforts are underway to increase the IR-UV conversion efficiency of the all solid-state setup by modifying the pump laser spatial profile along with incorporating improved OPO crystals.

Optimizing dynamic downscaling in one-way nesting using a regional ocean model

NASA Astrophysics Data System (ADS)

Pham, Van Sy; Hwang, Jin Hwan; Ku, Hyeyun

2016-10-01

Dynamical downscaling with nested regional oceanographic models has been demonstrated to be an effective approach for both operationally forecasted sea weather on regional scales and projections of future climate change and its impact on the ocean. However, when nesting procedures are carried out in dynamic downscaling from a larger-scale model or set of observations to a smaller scale, errors are unavoidable due to the differences in grid sizes and updating intervals. The present work assesses the impact of errors produced by nesting procedures on the downscaled results from Ocean Regional Circulation Models (ORCMs). Errors are identified and evaluated based on their sources and characteristics by employing the Big-Brother Experiment (BBE). The BBE uses the same model to produce both nesting and nested simulations; so it addresses those error sources separately (i.e., without combining the contributions of errors from different sources). Here, we focus on discussing errors resulting from the spatial grids' differences, the updating times and the domain sizes. After the BBE was separately run for diverse cases, a Taylor diagram was used to analyze the results and recommend an optimal combination of grid size, updating period and domain sizes. Finally, suggested setups for the downscaling were evaluated by examining the spatial correlations of variables and the relative magnitudes of variances between the nested model and the original data.

Development of a pyramidal wavefront sensor test-bench at INO

NASA Astrophysics Data System (ADS)

Turbide, Simon; Wang, Min; Gauvin, Jonny; Martin, Olivier; Savard, Maxime; Bourqui, Pascal; Veran, Jean-Pierre; Deschenes, William; Anctil, Genevieve; Chateauneuf, François

2013-12-01

The key technical element of the adaptive optics in astronomy is the wavefront sensing (WFS). One of the advantages of the pyramid wavefront sensor (P-WFS) over the widely used Shack-Hartmann wavefront sensor seems to be the increased sensitivity in closed-loop applications. A high-sensitivity and large dynamic-range WFS, such as P-WFS technology, still needs to be further investigated for proper justification in future Extremely Large Telescopes application. At INO, we have recently carried out the optical design, testing and performance evaluation of a P-WFS bench setup. The optical design of the bench setup mainly consists of the super-LED fiber source, source collimator, spatial light modulator (SLM), relay lenses, tip-tilt mirror, Fourier-transforming lens, and a four-faceted glass pyramid with a large vertex angle as well as pupil re-imaged optics. The phase-only SLM has been introduced in the bench setup to generate atmospheric turbulence with a maximum phase shift of more than 2π at each pixel (256 grey levels). Like a modified Foucault knife-edge test, the refractive pyramid element is used to produce four images of the entrance pupil on a CCD camera. The Fourier-transforming lens, which is used before the pyramid prism, is designed for telecentric output to allow dynamic modulation (rotation of the beam around the pyramid-prism center) from a tip-tilt mirror. Furthermore, a P-WFS diffraction-based model has been developed. This model includes most of the system limitations such as the SLM discrete voltage steps and the CCD pixel pitch. The pyramid effects (edges and tip) are considered as well. The modal wavefront reconstruction algorithm relies on the construction of an interaction matrix (one for each modulation's amplitude). Each column of the interaction matrix represents the combination of the four pupil images for a given wavefront aberration. The nice agreement between the data and the model suggest that the limitation of the system is not the P-WFS itself, but rather its environment such as source intensity fluctuation and vibration of the optical bench. Finally, the phase-reconstruction errors of the P-WFS have been compared to those of a Shack-Hartmann, showing the regions of interest of the former system. The bench setup will be focusing on the astronomy application as well as commercial applications, such as bio-medical application etc.

Photoacoustic physio-chemical analysis and its implementation in deep tissue with a catheter setup

NASA Astrophysics Data System (ADS)

Xu, Guan; Meng, Zhou-xian; Lin, Jian-die D.; Cheng, Qian; Wang, Xueding

2015-03-01

Photoacoustic (PA) measurements encode the information associated with both physical microstructures and chemical contents in biological tissues. A two-dimensional physio-chemical spectrogram (PCS) can be formulated by combining the power spectra of PA signals acquired at a series of optical wavelengths. The analysis of PCS, or namely PA physio-chemical analysis (PAPCA), enables the quantification of the relative concentrations and the spatial distributions of a variety of chemical components in the tissue. This study validated the feasibility of PAPCA in characterizing liver conditions during the progression of non-alcoholic fatty liver disease. A catheter based setup facilitating measurement in deep tissues was also tested.

Investigating a compact phantom and setup for testing body sound transducers

PubMed Central

Mansy, Hansen A; Grahe, Joshua; Royston, Thomas J; Sandler, Richard H

2011-01-01

Contact transducers are a key element in experiments involving body sounds. The characteristics of these devices are often not known with accuracy. There are no standardized calibration setups or procedures for testing these sensors. This study investigated the characteristics of a new computer-controlled sound source phantom for testing sensors. Results suggested that sensors with different sizes require special phantom requirements. The effectiveness of certain approaches on increasing the spatial and spectral uniformity of the phantom surface signal was studied. Non-uniformities >20 dB were removable, which can be particularly helpful in comparing the characteristics of different size sensors more accurately. PMID:21496795

Numerical study of a confocal ultrasonic setup for creation of cavitation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lafond, Maxime, E-mail: maxime.lafond@inserm.fr; Chavrier, Françoise; Prieur, Fabrice

2015-10-28

Acoustic cavitation is used for various therapeutic applications such as local enhancement of drug delivery, histotripsy or hyperthermia. One of the utmost important parameter for cavitation creation is the rarefaction pressure. The typical magnitude of the rarefaction pressure required to initiate cavitation from gas dissolved in tissue is beyond the range of the megapascal. Because nonlinear effects need to be taken into account, a numerical simulator based on the Westervelt equation was used to study the pressure waveform and the acoustic field generated by a setup for creation of cavitation consisting of two high intensity focused ultrasound transducers mounted confocally.more » At constant acoustic power, simulations with only one and both transducers from the confocal setup showed that the distortion of the pressure waveform due to the combined effects of nonlinearity and diffraction is less pronounced when both confocal transducers are used. Consequently, the confocal setup generates a greater peak negative pressure at focus which is more favorable for cavitation initiation. Comparison between the confocal setup and a single transducer with the same total emitting surface puts in evidence the role of the spatial separation of the two beams. Furthermore, it has been previously shown that the location of the peak negative pressure created by a single transducer shifts from focus towards the transducers in the presence of nonlinear effects. The simulator was used to study a configuration where the acoustical axes of transducers intersect on the peak negative pressure instead of the geometrical focus. For a representative confocal setup, namely moderate nonlinear effects, a 2% increase of the peak negative pressure and 8% decrease of the peak positive pressure resulted from this configuration. These differences tend to increase by increasing nonlinear effects. Although the optimal position of the transducers varies with the nonlinear regimen, the intersection point remains the location of the peak negative pressure in any case. Thus, unlike the location of the peak negative pressure for a single transducer can shift by a few millimeters, the focal point of a confocal device is independent of the power. This point is particularly important for therapeutic applications, frequently requiring high spatial accuracy. An experiment conducted shows that cavitation creation can be achieved easier with confocal ultrasound.« less

Laser speckle reduction due to spatial and angular diversity introduced by fast scanning micromirror.

PubMed

Akram, M Nadeem; Tong, Zhaomin; Ouyang, Guangmin; Chen, Xuyuan; Kartashov, Vladimir

2010-06-10

We utilize spatial and angular diversity to achieve speckle reduction in laser illumination. Both free-space and imaging geometry configurations are considered. A fast two-dimensional scanning micromirror is employed to steer the laser beam. A simple experimental setup is built to demonstrate the application of our technique in a two-dimensional laser picture projection. Experimental results show that the speckle contrast factor can be reduced down to 5% within the integration time of the detector.

Confocal shift interferometry of coherent emission from trapped dipolar excitons

DOE Office of Scientific and Technical Information (OSTI.GOV)

Repp, J.; Nanosystems Initiative Munich; Center for NanoScience and Fakultät für Physik, Ludwig-Maximilians-Universität, Geschwister-Scholl-Platz 1, 80539 München

2014-12-15

We introduce a confocal shift-interferometer based on optical fibers. The presented spectroscopy allows measuring coherence maps of luminescent samples with a high spatial resolution even at cryogenic temperatures. We apply the spectroscopy onto electrostatically trapped, dipolar excitons in a semiconductor double quantum well. We find that the measured spatial coherence length of the excitonic emission coincides with the point spread function of the confocal setup. The results are consistent with a temporal coherence of the excitonic emission down to temperatures of 250 mK.

Water level effects on breaking wave setup for Pacific Island fringing reefs

NASA Astrophysics Data System (ADS)

Becker, J. M.; Merrifield, M. A.; Ford, M.

2014-02-01

The effects of water level variations on breaking wave setup over fringing reefs are assessed using field measurements obtained at three study sites in the Republic of the Marshall Islands and the Mariana Islands in the western tropical Pacific Ocean. At each site, reef flat setup varies over the tidal range with weaker setup at high tide and stronger setup at low tide for a given incident wave height. The observed water level dependence is interpreted in the context of radiation stress gradients specified by an idealized point break model generalized for nonnormally incident waves. The tidally varying setup is due in part to depth-limited wave heights on the reef flat, as anticipated from previous reef studies, but also to tidally dependent breaking on the reef face. The tidal dependence of the breaking is interpreted in the context of the point break model in terms of a tidally varying wave height to water depth ratio at breaking. Implications for predictions of wave-driven setup at reef-fringed island shorelines are discussed.

Drainage area characterization for evaluating green infrastructure using the Storm Water Management Model

NASA Astrophysics Data System (ADS)

Lee, Joong Gwang; Nietch, Christopher T.; Panguluri, Srinivas

2018-05-01

Urban stormwater runoff quantity and quality are strongly dependent upon catchment properties. Models are used to simulate the runoff characteristics, but the output from a stormwater management model is dependent on how the catchment area is subdivided and represented as spatial elements. For green infrastructure modeling, we suggest a discretization method that distinguishes directly connected impervious area (DCIA) from the total impervious area (TIA). Pervious buffers, which receive runoff from upgradient impervious areas should also be identified as a separate subset of the entire pervious area (PA). This separation provides an improved model representation of the runoff process. With these criteria in mind, an approach to spatial discretization for projects using the US Environmental Protection Agency's Storm Water Management Model (SWMM) is demonstrated for the Shayler Crossing watershed (SHC), a well-monitored, residential suburban area occupying 100 ha, east of Cincinnati, Ohio. The model relies on a highly resolved spatial database of urban land cover, stormwater drainage features, and topography. To verify the spatial discretization approach, a hypothetical analysis was conducted. Six different representations of a common urbanscape that discharges runoff to a single storm inlet were evaluated with eight 24 h synthetic storms. This analysis allowed us to select a discretization scheme that balances complexity in model setup with presumed accuracy of the output with respect to the most complex discretization option considered. The balanced approach delineates directly and indirectly connected impervious areas (ICIA), buffering pervious area (BPA) receiving impervious runoff, and the other pervious area within a SWMM subcatchment. It performed well at the watershed scale with minimal calibration effort (Nash-Sutcliffe coefficient = 0.852; R2 = 0.871). The approach accommodates the distribution of runoff contributions from different spatial components and flow pathways that would impact green infrastructure performance. A developed SWMM model using the discretization approach is calibrated by adjusting parameters per land cover component, instead of per subcatchment and, therefore, can be applied to relatively large watersheds if the land cover components are relatively homogeneous and/or categorized appropriately in the GIS that supports the model parameterization. Finally, with a few model adjustments, we show how the simulated stream hydrograph can be separated into the relative contributions from different land cover types and subsurface sources, adding insight to the potential effectiveness of planned green infrastructure scenarios at the watershed scale.

Test Setup For Model Landing Investigation of a Winged Space Vehicle

NASA Image and Video Library

1960-07-20

Test Setup For Model Landing Investigation of a Winged Space Vehicle Image used in NASA Document TN-D-1496 1960-L-04633.01 is Figure 9a for NASA Document L-2064 Photograph of model on launcher and landing on runway.

Picosecond Acoustics in Single Quantum Wells of Cubic GaN /(Al ,Ga )N

NASA Astrophysics Data System (ADS)

Czerniuk, T.; Ehrlich, T.; Wecker, T.; As, D. J.; Yakovlev, D. R.; Akimov, A. V.; Bayer, M.

2017-01-01

A picosecond acoustic pulse is used to study the photoelastic interaction in single zinc-blende GaN /AlxGa1 -x N quantum wells. We use an optical time-resolved pump-probe setup and demonstrate that tuning the photon energy to the quantum well's lowest electron-hole transition makes the experiment sensitive to the quantum well only. Because of the small width, its temporal and spatial resolution allows us to track the few-picosecond-long transit of the acoustic pulse. We further deploy a model to analyze the unknown photoelastic coupling strength of the quantum well for different photon energies and find good agreement with the experiments.

Lacan’s Construction and Deconstruction of the Double-Mirror Device

PubMed Central

Vanheule, Stijn

2011-01-01

In the 1950s Jacques Lacan developed a set-up with a concave mirror and a plane mirror, based on which he described the nature of human identification. He also formulated ideas on how psychoanalysis, qua clinical practice, responds to identification. In this paper Lacan’s schema of the two mirrors is described in detail and the theoretical line of reasoning he aimed to articulate with aid of this spatial model is discussed. It is argued that Lacan developed his double-mirror device to clarify the relationship between the drive, the ego, the ideal ego, the ego-ideal, the other, and the Other. This model helped Lacan describe the dynamics of identification and explain how psychoanalytic treatment works. He argued that by working with free association, psychoanalysis aims to articulate unconscious desire, and bypass the tendency of the ego for misrecognition. The reasons why Lacan stressed the limits of his double-mirror model and no longer considered it useful from the early 1960s onward are examined. It is argued that his concept of the gaze, which he qualifies as a so-called “object a,” prompted Lacan move away from his double-mirror set-up. In those years Lacan gradually began to study the tension between drive and signifier. The schema of the two mirrors, by contrast, focused on the tension between image and signifier, and missed the point Lacan aimed to address in this new era of his work. PMID:21949511

The Offshore New European Wind Atlas

NASA Astrophysics Data System (ADS)

Karagali, I.; Hahmann, A. N.; Badger, M.; Hasager, C.; Mann, J.

2017-12-01

The New European Wind Atlas (NEWA) is a joint effort of research agencies from eight European countries, co-funded under the ERANET Plus Program. The project is structured around two areas of work: development of dynamical downscaling methodologies and measurement campaigns to validate these methodologies, leading to the creation and publication of a European wind atlas in electronic form. This atlas will contain an offshore component extending 100 km from the European coasts. To achieve this, mesoscale models along with various observational datasets are utilised. Scanning lidars located at the coastline were used to compare the coastal wind gradient reproduced by the meso-scale model. Currently, an experimental campaign is occurring in the Baltic Sea, with a lidar located in a commercial ship sailing from Germany to Lithuania, thus covering the entire span of the south Baltic basin. In addition, satellite wind retrievals from scatterometers and Synthetic Aperture Radar (SAR) instruments were used to generate mean wind field maps and validate offshore modelled wind fields and identify the optimal model set-up parameters.The aim of this study is to compare the initial outputs from the offshore wind atlas produced by the Weather & Research Forecasting (WRF) model, still in pre-operational phase, and the METOP-A/B Advanced Scatterometer (ASCAT) wind fields, reprocessed to stress equivalent winds at 10m. Different experiments were set-up to evaluate the model sensitivity for the various domains covered by the NEWA offshore atlas. ASCAT winds were utilised to assess the performance of the WRF offshore atlases. In addition, ASCAT winds were used to create an offshore atlas covering the years 2007 to 2016, capturing the signature of various spatial wind features, such as channelling and lee effects from complex coastal topographical elements.

An Open Source modular platform for hydrological model implementation

NASA Astrophysics Data System (ADS)

Kolberg, Sjur; Bruland, Oddbjørn

2010-05-01

An implementation framework for setup and evaluation of spatio-temporal models is developed, forming a highly modularized distributed model system. The ENKI framework allows building space-time models for hydrological or other environmental purposes, from a suite of separately compiled subroutine modules. The approach makes it easy for students, researchers and other model developers to implement, exchange, and test single routines in a fixed framework. The open-source license and modular design of ENKI will also facilitate rapid dissemination of new methods to institutions engaged in operational hydropower forecasting or other water resource management. Written in C++, ENKI uses a plug-in structure to build a complete model from separately compiled subroutine implementations. These modules contain very little code apart from the core process simulation, and are compiled as dynamic-link libraries (dll). A narrow interface allows the main executable to recognise the number and type of the different variables in each routine. The framework then exposes these variables to the user within the proper context, ensuring that time series exist for input variables, initialisation for states, GIS data sets for static map data, manually or automatically calibrated values for parameters etc. ENKI is designed to meet three different levels of involvement in model construction: • Model application: Running and evaluating a given model. Regional calibration against arbitrary data using a rich suite of objective functions, including likelihood and Bayesian estimation. Uncertainty analysis directed towards input or parameter uncertainty. o Need not: Know the model's composition of subroutines, or the internal variables in the model, or the creation of method modules. • Model analysis: Link together different process methods, including parallel setup of alternative methods for solving the same task. Investigate the effect of different spatial discretization schemes. o Need not: Write or compile computer code, handle file IO for each modules, • Routine implementation and testing. Implementation of new process-simulating methods/equations, specialised objective functions or quality control routines, testing of these in an existing framework. o Need not: Implement user or model interface for the new routine, IO handling, administration of model setup and run, calibration and validation routines etc. From being developed for Norway's largest hydropower producer Statkraft, ENKI is now being turned into an Open Source project. At the time of writing, the licence and the project administration is not established. Also, it remains to port the application to other compilers and computer platforms. However, we hope that ENKI will prove useful for both academic and operational users.

Simulating air quality in the Netherlands with WRF-Chem 3.8.1 at high resolution

NASA Astrophysics Data System (ADS)

Hilboll, Andreas; Kuenen, Jeroen; Denier van der Gon, Hugo; Vrekoussis, Mihalis

2017-04-01

Air pollution is the single most important environmental hazard for public health. Especially nitrogen dioxide (NO(2)) plays a key role in air quality research, both due to its immediate importance for the production of tropospheric ozone and acid rain, and as a general indicator of fossil fuel burning. To improve the quality and reproducibility of measurements of NO(2) vertical distribution from MAX-DOAS instruments, the CINDI-2 campaign was held in Cabauw (NL) in September 2016, featuring instruments from many of the leading atmospheric research institutions in the world. The measurement site in Cabauw is located in a rather rural region, surrounded by several major pollution centers (Utrecht, Rotterdam, Amsterdam). Since the instruments measure in several azimuthal directions, the measurements are able to provide information about the high spatial and temporal variability in pollutant concentrations, caused by both the spatial heterogeneity of emissions and meteorological conditions. When using air quality models in the analysis of the measured data to identify pollution sources, this mandates high spatial resolution in order to resolve the expected fine spatial structure in NO(2) concentrations. In spite of constant advances in computing power, this remains a challenge, mostly due to the uncertainties and large spatial heterogeneity of emissions and the need to parameterize small-scale processes. In this study, we use the most recent version 3.8.1 of the Weather Research and Forecasting Model with Chemistry (WRF-Chem) to simulate air pollutant concentrations over the Netherlands, to facilitate the analysis of the CINDI-2 NO(2}) measurements. The model setup contains three nested domains with horizontal resolutions of 15, 3, and 1 km. Anthropogenic emissions are taken from the TNO-MACC III inventory and, where available, from the Dutch Pollutant Release and Transfer Register (Emissieregistratie), at a spatial resolution of 7 and 1 km, respectively. We use the Common Reactive Intermediates gas-phase chemical mechanism (CRIv2-R5) with the MOSAIC aerosol module. The high spatial resolution of model and emissions will allow us to resolve the strong spatial gradients in the NO(2) concentrations measured during the CINDI-2 campaign, allowing for an unprecedented level of detail in the analysis of individual pollution sources.

Precision assessment of model-based RSA for a total knee prosthesis in a biplanar set-up.

PubMed

Trozzi, C; Kaptein, B L; Garling, E H; Shelyakova, T; Russo, A; Bragonzoni, L; Martelli, S

2008-10-01

Model-based Roentgen Stereophotogrammetric Analysis (RSA) was recently developed for the measurement of prosthesis micromotion. Its main advantage is that markers do not need to be attached to the implants as traditional marker-based RSA requires. Model-based RSA has only been tested in uniplanar radiographic set-ups. A biplanar set-up would theoretically facilitate the pose estimation algorithm, since radiographic projections would show more different shape features of the implants than in uniplanar images. We tested the precision of model-based RSA and compared it with that of the traditional marker-based method in a biplanar set-up. Micromotions of both tibial and femoral components were measured with both the techniques from double examinations of patients participating in a clinical study. The results showed that in the biplanar set-up model-based RSA presents a homogeneous distribution of precision for all the translation directions, but an inhomogeneous error for rotations, especially internal-external rotation presented higher errors than rotations about the transverse and sagittal axes. Model-based RSA was less precise than the marker-based method, although the differences were not significant for the translations and rotations of the tibial component, with the exception of the internal-external rotations. For both prosthesis components the precisions of model-based RSA were below 0.2 mm for all the translations, and below 0.3 degrees for rotations about transverse and sagittal axes. These values are still acceptable for clinical studies aimed at evaluating total knee prosthesis micromotion. In a biplanar set-up model-based RSA is a valid alternative to traditional marker-based RSA where marking of the prosthesis is an enormous disadvantage.

Evaluating RGB photogrammetry and multi-temporal digital surface models for detecting soil erosion

NASA Astrophysics Data System (ADS)

Anders, Niels; Keesstra, Saskia; Seeger, Manuel

2013-04-01

Photogrammetry is a widely used tool for generating high-resolution digital surface models. Unmanned Aerial Vehicles (UAVs), equipped with a Red Green Blue (RGB) camera, have great potential in quickly acquiring multi-temporal high-resolution orthophotos and surface models. Such datasets would ease the monitoring of geomorphological processes, such as local soil erosion and rill formation after heavy rainfall events. In this study we test a photogrammetric setup to determine data requirements for soil erosion studies with UAVs. We used a rainfall simulator (5 m2) and above a rig with attached a Panasonic GX1 16 megapixel digital camera and 20mm lens. The soil material in the simulator consisted of loamy sand at an angle of 5 degrees. Stereo pair images were taken before and after rainfall simulation with 75-85% overlap. Acquired images were automatically mosaicked to create high-resolution orthorectified images and digital surface models (DSM). We resampled the DSM to different spatial resolutions to analyze the effect of cell size to the accuracy of measured rill depth and soil loss estimations, and determined an optimal cell size (thus flight altitude). Furthermore, the high spatial accuracy of the acquired surface models allows further analysis of rill formation and channel initiation related to e.g. surface roughness. We suggest implementing near-infrared and temperature sensors to combine soil moisture and soil physical properties with surface morphology for future investigations.

Multi-scale hydrometeorological observation and modelling for flash flood understanding

NASA Astrophysics Data System (ADS)

Braud, I.; Ayral, P.-A.; Bouvier, C.; Branger, F.; Delrieu, G.; Le Coz, J.; Nord, G.; Vandervaere, J.-P.; Anquetin, S.; Adamovic, M.; Andrieu, J.; Batiot, C.; Boudevillain, B.; Brunet, P.; Carreau, J.; Confoland, A.; Didon-Lescot, J.-F.; Domergue, J.-M.; Douvinet, J.; Dramais, G.; Freydier, R.; Gérard, S.; Huza, J.; Leblois, E.; Le Bourgeois, O.; Le Boursicaud, R.; Marchand, P.; Martin, P.; Nottale, L.; Patris, N.; Renard, B.; Seidel, J.-L.; Taupin, J.-D.; Vannier, O.; Vincendon, B.; Wijbrans, A.

2014-09-01

This paper presents a coupled observation and modelling strategy aiming at improving the understanding of processes triggering flash floods. This strategy is illustrated for the Mediterranean area using two French catchments (Gard and Ardèche) larger than 2000 km2. The approach is based on the monitoring of nested spatial scales: (1) the hillslope scale, where processes influencing the runoff generation and its concentration can be tackled; (2) the small to medium catchment scale (1-100 km2), where the impact of the network structure and of the spatial variability of rainfall, landscape and initial soil moisture can be quantified; (3) the larger scale (100-1000 km2), where the river routing and flooding processes become important. These observations are part of the HyMeX (HYdrological cycle in the Mediterranean EXperiment) enhanced observation period (EOP), which will last 4 years (2012-2015). In terms of hydrological modelling, the objective is to set up regional-scale models, while addressing small and generally ungauged catchments, which represent the scale of interest for flood risk assessment. Top-down and bottom-up approaches are combined and the models are used as "hypothesis testing" tools by coupling model development with data analyses in order to incrementally evaluate the validity of model hypotheses. The paper first presents the rationale behind the experimental set-up and the instrumentation itself. Second, we discuss the associated modelling strategy. Results illustrate the potential of the approach in advancing our understanding of flash flood processes on various scales.

Delayed-matching-to-place Task in a Dry Maze to Measure Spatial Working Memory in Mice.

PubMed

Feng, Xi; Krukowski, Karen; Jopson, Timothy; Rosi, Susanna

2017-07-05

The delayed-matching-to-place (DMP) dry maze test is a variant of DMP water maze (Steele and Morris, 1999; Faizi et al. , 2012) which measures spatial working/episodic-like learning and memory that depends on both hippocampal and cortical functions (Wang and Morris, 2010; Euston et al. , 2012). Using this test we can detect normal aging related spatial working memory decline, as well as trauma induced working memory deficits. Furthermore, we recently reported that fractionated whole brain irradiation does not affect working memory in mice (Feng et al. , 2016). Here we describe the experimental setup and procedures of this behavioral test.

Modulating complex beams in amplitude and phase using fast tilt-micromirror arrays and phase masks.

PubMed

Roth, Matthias; Heber, Jörg; Janschek, Klaus

2018-06-15

The Letter proposes a system for the spatial modulation of light in amplitude and phase at kilohertz frame rates and high spatial resolution. The focus is fast spatial light modulators (SLMs) consisting of continuously tiltable micromirrors. We investigate the utilization of such SLMs in combination with a static phase mask in a 4f setup. The phase mask enables the complex beam modulation in a linear optical arrangement. Furthermore, adding so-called phase steps to the phase mask increases both the number of image pixels at constant SLM resolution and the optical efficiency. We illustrate our concept based on numerical simulations.

Dosimetric challenges of small animal irradiation with a commercial X-ray unit.

PubMed

Kuess, Peter; Bozsaky, Eva; Hopfgartner, Johannes; Seifritz, Gerhard; Dörr, Wolfgang; Georg, Dietmar

2014-12-01

A commercial X-ray unit was recently installed at the Medical University Vienna for partial and whole body irradiation of small experimental animals. For 200 kV X-rays the dose deviations with respect to the reference dose measured in the geometrical center of the potential available field size was investigated for various experimental setup plates used for mouse irradiations. Furthermore, the HVL was measured in mm Al and mm Cu at 200 kV for two types of filtration. Three different setup constructions for small animal irradiation were dosimetrically characterized, covering field sizes from 9×20 mm2 to 210×200 mm2. Different types of detectors were investigated. Additionally LiF:MG,Ti TLD chips were used for mouse in-vivo dosimetry. The use of an additional 0.5 mm Cu filter reduced the deviation of the dose between each irradiation position on the setup plates. Multiple animals were irradiated at the same time using an individual setup plate for each experimental purpose. The dose deviations of each irradiation position to the center was measured to be ±4% or better. The depth dose curve measured in a solid water phantom was more pronounced for smaller field sizes. The comparison between estimated dose and measured dose in a PMMA phantom regarding the dose decline yielded in a difference of 3.9% at 20 mm depth. In-vivo measurements in a mouse snouts irradiation model confirmed the reference dosimetry, accomplished in PMMA phantoms, in terms of administered dose and deviation within different points of measurement. The outlined experiments dealt with a wide variety of dosimetric challenges during the installation of a new X-ray unit in the laboratory. The depth dose profiles measured for different field sizes were in good agreement with literature data. Different field sizes and spatial arrangement of the animals (depending on each purpose) provide additional challenges for the dosimetric measurements. Thorough dosimetric commissioning has to be performed before a new experimental setup is approved for biological experiments. Copyright © 2014. Published by Elsevier GmbH.

Low LET proton microbeam to understand high-LET RBE by shaping spatial dose distribution

NASA Astrophysics Data System (ADS)

Greubel, Christoph; Ilicic, Katarina; Rösch, Thomas; Reindl, Judith; Siebenwirth, Christian; Moser, Marcus; Girst, Stefanie; Walsh, Dietrich W. M.; Schmid, Thomas E.; Dollinger, Günther

2017-08-01

High LET radiation, like heavy ions, are known to have a higher biological effectiveness (RBE) compared to low LET radiation, like X- or γ -rays. Theories and models attribute these higher effectiveness mostly to their extremely inhomogeneous dose deposition, which is concentrated in only a few micron sized spots. At the ion microprobe SNAKE, low LET 20 MeV protons (LET in water of 2.6 keV/μm) can be applied to cells either randomly distributed or focused to submicron spots, approximating heavy ion dose deposition. Thus, the transition between low and high LET energy deposition is experimentally accessible and the effect of different spatial dose distributions can be analysed. Here, we report on the technical setup to cultivate and irradiate 104 cells with submicron spots of low LET protons to measure cell survival in unstained cells. In addition we have taken special care to characterise the beam spot of the 20 MeV proton microbeam with fluorescent nuclear track detectors.

Cryo-optical testing of large aspheric reflectors operating in the sub mm range

NASA Astrophysics Data System (ADS)

Roose, S.; Houbrechts, Y.; Mazzoli, A.; Ninane, N.; Stockman, Y.; Daddato, R.; Kirschner, V.; Venacio, L.; de Chambure, D.

2006-02-01

The cryo-optical testing of the PLANCK primary reflector (elliptical off-axis CFRP reflector of 1550 mm x 1890 mm) is one of the major issue in the payload development program. It is requested to measure the changes of the Surface Figure Error (SFE) with respect to the best ellipsoid, between 293 K and 50 K, with a 1 μm RMS accuracy. To achieve this, Infra Red interferometry has been used and a dedicated thermo mechanical set-up has been constructed. This paper summarises the test activities, the test methods and results on the PLANCK Primary Reflector - Flight Model (PRFM) achieved in FOCAL 6.5 at Centre Spatial de Liege (CSL). Here, the Wave Front Error (WFE) will be considered, the SFE can be derived from the WFE measurement. After a brief introduction, the first part deals with the general test description. The thermo-elastic deformations will be addressed: the surface deformation in the medium frequency range (spatial wavelength down to 60 mm) and core-cell dimpling.

Sensitivity study of the UHI in the city of Szeged (Hungary) to different offline simulation set-ups using SURFEX/TEB

NASA Astrophysics Data System (ADS)

Zsebeházi, Gabriella; Hamdi, Rafiq; Szépszó, Gabriella

2015-04-01

Urbanised areas modify the local climate due to the physical properties of surface subjects and their morphology. The urban effect on local climate and regional climate change interact, resulting in more serious climate change impacts (e.g., more heatwave events) over cities. Majority of people are now living in cities and thus, affected by these enhanced changes. Therefore, targeted adaptation and mitigation strategies in cities are of high importance. Regional climate models (RCMs) are sufficient tools for estimating future climate change of an area in detail, although most of them cannot represent the urban climate characteristics, because their spatial resolution is too coarse (in general 10-50 km) and they do not use a specific urban parametrization over urbanized areas. To describe the interactions between the urban surface and atmosphere on few km spatial scale, we use the externalised SURFEX land surface scheme including the TEB urban canopy model in offline mode (i.e. the interaction is only one-way). The driving atmospheric conditions highly influence the impact results, thus the good quality of these data is particularly essential. The overall aim of our research is to understand the behaviour of the impact model and its interaction with the forcing coming from the atmospheric model in order to reduce the biases, which can lead to qualified impact studies of climate change over urban areas. As a preliminary test, several short (few-day) 1 km resolution simulations are carried out over a domain covering a Hungarian town, Szeged, which is located at the flat southern part of Hungary. The atmospheric forcing is provided by ALARO (a new version of the limited-area model of the ARPEGE-IFS system running at the Royal Meteorological Institute of Belgium) applied over Hungary. The focal point of our investigations is the ability of SURFEX to simulate the diurnal evolution and spatial pattern of urban heat island (UHI). Different offline simulation set-ups have been tested: 1. Atmospheric forcing at 4km and 10km resolutions; 2. Atmospheric forcing prepared with and without TEB; 3. Coupling of forcings on 3h and 1h temporal frequencies; 4. Different forcing levels on 50m, 40m, 30m, 20m, 10m; 5. Different computation method of 2m temperature using CANOPY, Paulson, and Geleyn schemes. Finally, some outcomes are also compared to the results obtained using ALADIN-Climate RCM (adapted and used at the Hungarian Meteorological Service on 10 km resolution) as driving atmospheric model. The presentation is dedicated to show the results and main conclusions of our studies.

Dental Optical Coherence Tomography

PubMed Central

Hsieh, Yao-Sheng; Ho, Yi-Ching; Lee, Shyh-Yuan; Chuang, Ching-Cheng; Tsai, Jui-che; Lin, Kun-Feng; Sun, Chia-Wei

2013-01-01

This review paper describes the applications of dental optical coherence tomography (OCT) in oral tissue images, caries, periodontal disease and oral cancer. The background of OCT, including basic theory, system setup, light sources, spatial resolution and system limitations, is provided. The comparisons between OCT and other clinical oral diagnostic methods are also discussed. PMID:23857261

The pre-launch characterization of SIMBIO-SYS/VIHI imaging spectrometer for the BepiColombo mission to Mercury. I. Linearity, radiometry, and geometry calibrations.

PubMed

Filacchione, Gianrico; Capaccioni, Fabrizio; Altieri, Francesca; Carli, Cristian; Ficai Veltroni, Iacopo; Dami, Michele; Tommasi, Leonardo; Aroldi, Gianluca; Borrelli, Donato; Barbis, Alessandra; Baroni, Marco; Pastorini, Guia; Mugnuolo, Raffaele

2017-09-01

Before integration aboard European Space Agency BepiColombo mission to Mercury, the visible and near infrared hyperspectral imager underwent an intensive calibration campaign. We report in Paper I about the radiometric and linearity responses of the instrument including the optical setups used to perform them. Paper II [F. Altieri et al., Rev. Sci. Instrum. 88, 094503 (2017)] will describe complementary spectral response calibration. The responsivity is used to calculate the expected instrumental signal-to-noise ratio for typical observation scenarios of the BepiColombo mission around Mercury. A description is provided of the internal calibration unit that will be used to verify the relative response during the instrument's lifetime. The instrumental spatial response functions as measured along and across the spectrometer's slit direction were determined by means of spatial scans performed with illuminated test slits placed at the focus of a collimator. The dedicated optical setup used for these measurements is described together with the methods used to derive the instrumental spatial responses at different positions within the 3.5 ° field of view and at different wavelengths in the 0.4-2.0 μm spectral range. Finally, instrument imaging capabilities and Modulated Transfer Function are tested by using a standard mask as a target.

A novel control software that improves the experimental workflow of scanning photostimulation experiments.

PubMed

Bendels, Michael H K; Beed, Prateep; Leibold, Christian; Schmitz, Dietmar; Johenning, Friedrich W

2008-10-30

Optical uncaging of caged compounds is a well-established method to study the functional anatomy of a brain region on the circuit level. We present an alternative approach to existing experimental setups. Using a low-magnification objective we acquire images for planning the spatial patterns of stimulation. Then high-magnification objectives are used during laser stimulation providing a laser spot between 2 microm and 20 microm size. The core of this system is a video-based control software that monitors and controls the connected devices, allows for planning of the experiment, coordinates the stimulation process and manages automatic data storage. This combines a high-resolution analysis of neuronal circuits with flexible and efficient online planning and execution of a grid of spatial stimulation patterns on a larger scale. The software offers special optical features that enable the system to achieve a maximum degree of spatial reliability. The hardware is mainly built upon standard laboratory devices and thus ideally suited to cost-effectively complement existing electrophysiological setups with a minimal amount of additional equipment. Finally, we demonstrate the performance of the system by mapping the excitatory and inhibitory connections of entorhinal cortex layer II stellate neurons and present an approach for the analysis of photo-induced synaptic responses in high spontaneous activity.

Technical Note: Introduction of variance component analysis to setup error analysis in radiotherapy

DOE Office of Scientific and Technical Information (OSTI.GOV)

Matsuo, Yukinori, E-mail: ymatsuo@kuhp.kyoto-u.ac.

Purpose: The purpose of this technical note is to introduce variance component analysis to the estimation of systematic and random components in setup error of radiotherapy. Methods: Balanced data according to the one-factor random effect model were assumed. Results: Analysis-of-variance (ANOVA)-based computation was applied to estimate the values and their confidence intervals (CIs) for systematic and random errors and the population mean of setup errors. The conventional method overestimates systematic error, especially in hypofractionated settings. The CI for systematic error becomes much wider than that for random error. The ANOVA-based estimation can be extended to a multifactor model considering multiplemore » causes of setup errors (e.g., interpatient, interfraction, and intrafraction). Conclusions: Variance component analysis may lead to novel applications to setup error analysis in radiotherapy.« less

Optimization-based manufacturing scheduling with multiple resources and setup requirements

NASA Astrophysics Data System (ADS)

Chen, Dong; Luh, Peter B.; Thakur, Lakshman S.; Moreno, Jack, Jr.

1998-10-01

The increasing demand for on-time delivery and low price forces manufacturer to seek effective schedules to improve coordination of multiple resources and to reduce product internal costs associated with labor, setup and inventory. This study describes the design and implementation of a scheduling system for J. M. Product Inc. whose manufacturing is characterized by the need to simultaneously consider machines and operators while an operator may attend several operations at the same time, and the presence of machines requiring significant setup times. The scheduling problem with these characteristics are typical for many manufacturers, very difficult to be handled, and have not been adequately addressed in the literature. In this study, both machine and operators are modeled as resources with finite capacities to obtain efficient coordination between them, and an operator's time can be shared by several operations at the same time to make full use of the operator. Setups are explicitly modeled following our previous work, with additional penalties on excessive setups to reduce setup costs and avoid possible scraps. An integer formulation with a separable structure is developed to maximize on-time delivery of products, low inventory and small number of setups. Within the Lagrangian relaxation framework, the problem is decomposed into individual subproblems that are effectively solved by using dynamic programming with additional penalties embedded in state transitions. Heuristics is then developed to obtain a feasible schedule following on our previous work with new mechanism to satisfy operator capacity constraints. The method has been implemented using the object-oriented programming language C++ with a user-friendly interface, and numerical testing shows that the method generates high quality schedules in a timely fashion. Through simultaneous consideration of machines and operators, machines and operators are well coordinated to facilitate the smooth flow of parts through the system. The explicit modeling of setups and the associated penalties let parts with same setup requirements clustered together to avoid excessive setups.

Measurement of the secondary electron emission from CVD diamond films using phosphor screen detectors

NASA Astrophysics Data System (ADS)

Vaz, R.; May, P. W.; Fox, N. A.; Harwood, C. J.; Chatterjee, V.; Smith, J. A.; Horsfield, C. J.; Lapington, J. S.; Osbourne, S.

2015-03-01

Diamond-based photomultipliers have the potential to provide a significant improvement over existing devices due to diamond's high secondary electron yield and narrow energy distribution of secondary electrons which improves energy resolution creating extremely fast response times. In this paper we describe an experimental apparatus designed to study secondary electron emission from diamond membranes only 400 nm thick, observed in reflection and transmission configurations. The setup consists of a system of calibrated P22 green phosphor screens acting as radiation converters which are used in combination with photomultiplier tubes to acquire secondary emission yield data from the diamond samples. The superior signal voltage sampling of the phosphor screen setup compared with traditional Faraday Cup detection allows the variation in the secondary electron yield across the sample to be visualised, allowing spatial distributions to be obtained. Preliminary reflection and transmission yield data are presented as a function of primary electron energy for selected CVD diamond films and membranes. Reflection data were also obtained from the same sample set using a Faraday Cup detector setup. In general, the curves for secondary electron yield versus primary energy for both measurement setups were comparable. On average a 15-20% lower signal was recorded on our setup compared to the Faraday Cup, which was attributed to the lower photoluminescent efficiency of the P22 phosphor screens when operated at sub-kilovolt bias voltages.

Transferable Calibration Standard Developed for Quantitative Raman Scattering Diagnostics in High-Pressure Flames

NASA Technical Reports Server (NTRS)

Nguyen, Quang-Viet; Kojima, Jun

2005-01-01

Researchers from NASA Glenn Research Center s Combustion Branch and the Ohio Aerospace Institute (OAI) have developed a transferable calibration standard for an optical technique called spontaneous Raman scattering (SRS) in high-pressure flames. SRS is perhaps the only technique that provides spatially and temporally resolved, simultaneous multiscalar measurements in turbulent flames. Such measurements are critical for the validation of numerical models of combustion. This study has been a combined experimental and theoretical effort to develop a spectral calibration database for multiscalar diagnostics using SRS in high-pressure flames. However, in the past such measurements have used a one-of-a-kind experimental setup and a setup-dependent calibration procedure to empirically account for spectral interferences, or crosstalk, among the major species of interest. Such calibration procedures, being non-transferable, are prohibitively expensive to duplicate. A goal of this effort is to provide an SRS calibration database using transferable standards that can be implemented widely by other researchers for both atmospheric-pressure and high-pressure (less than 30 atm) SRS studies. A secondary goal of this effort is to provide quantitative multiscalar diagnostics in high pressure environments to validate computational combustion codes.

Optimal arrangements of fiber optic probes to enhance the spatial resolution in depth for 3D reflectance diffuse optical tomography with time-resolved measurements performed with fast-gated single-photon avalanche diodes

NASA Astrophysics Data System (ADS)

Puszka, Agathe; Di Sieno, Laura; Dalla Mora, Alberto; Pifferi, Antonio; Contini, Davide; Boso, Gianluca; Tosi, Alberto; Hervé, Lionel; Planat-Chrétien, Anne; Koenig, Anne; Dinten, Jean-Marc

2014-02-01

Fiber optic probes with a width limited to a few centimeters can enable diffuse optical tomography (DOT) in intern organs like the prostate or facilitate the measurements on extern organs like the breast or the brain. We have recently shown on 2D tomographic images that time-resolved measurements with a large dynamic range obtained with fast-gated single-photon avalanche diodes (SPADs) could push forward the imaged depth range in a diffusive medium at short source-detector separation compared with conventional non-gated approaches. In this work, we confirm these performances with the first 3D tomographic images reconstructed with such a setup and processed with the Mellin- Laplace transform. More precisely, we investigate the performance of hand-held probes with short interfiber distances in terms of spatial resolution and specifically demonstrate the interest of having a compact probe design featuring small source-detector separations. We compare the spatial resolution obtained with two probes having the same design but different scale factors, the first one featuring only interfiber distances of 15 mm and the second one, 10 mm. We evaluate experimentally the spatial resolution obtained with each probe on the setup with fast-gated SPADs for optical phantoms featuring two absorbing inclusions positioned at different depths and conclude on the potential of short source-detector separations for DOT.

Spatial Estimation of Evapotranspiration in an Irrigated Semi-arid Region Using LSMs Driven by Remote Sensing Data.

NASA Astrophysics Data System (ADS)

Etchanchu, J.; Delogu, E.; Saadi, S.; Chebbi, W.; Trapon, D.; Rivalland, V.; Boulet, G.; Boone, A. A.; Fanise, P.; Mougenot, B.; LE Dantec, V.

2017-12-01

Evapotranspiration and sensible-latent heat flux partition are important decision critera to manage crops, detect water stress and plan irrigation, particularly in a semi-arid context. Nowadays, remote sensing information (at medium -MODIS- and high resolution -LANDSAT, SPOT-) allows us to spatially estimate the different terms of the energy balance at daily and infra-daily time step through various approaches, either by forcing data in an energy balance model (EVASPA, Gallego-Elvira et al., 2013, and SPARSE, Boulet et al., 2015) or data assimilation in coupled water/energy balance models (SURFEX-ISBA, Noilhan et Planton, 1989). However, these different methods of flux estimations still require an evaluation through comparison to in-situ measurements and inter-comparison.The area selected for this study is the Kairouan agricultural plain, a semi-arid region in central Tunisia. Different flux datasets were acquired over two years, on an extensive rainfed oliveyard with very low vegetation cover, and on irrigated and rainfed wheat plots. In the same time, a third dataset has been acquired over a complex agricultural landscape with an eXtra-Large Aperture Scintillometer (XLAS) set-up on a 4 km transect.First, EC fluxes from towers are compared to the different model simulations at plot scale. Then a spatial comparison with retrievals of sensible and latent heat fluxes from XLAS is performed which allows to take into account the heterogeneity of the landscape (mix of wheat, irrigated oliveyards and bare soil). Effects on irrigation scenarios, through an automatic irrigation triggering method are tested and discussed. Finally, we cross-compare the different modeling approaches.We tackle the various issues: the accuracy of the measurements, the temporal frequency of remote sensing data, and the difficulty to calibrate the models.

Proof of principle study of the use of a CMOS active pixel sensor for proton radiography

DOE Office of Scientific and Technical Information (OSTI.GOV)

Seco, Joao; Depauw, Nicolas

2011-02-15

Purpose: Proof of principle study of the use of a CMOS active pixel sensor (APS) in producing proton radiographic images using the proton beam at the Massachusetts General Hospital (MGH). Methods: A CMOS APS, previously tested for use in s-ray radiation therapy applications, was used for proton beam radiographic imaging at the MGH. Two different setups were used as a proof of principle that CMOS can be used as proton imaging device: (i) a pen with two metal screws to assess spatial resolution of the CMOS and (ii) a phantom with lung tissue, bone tissue, and water to assess tissuemore » contrast of the CMOS. The sensor was then traversed by a double scattered monoenergetic proton beam at 117 MeV, and the energy deposition inside the detector was recorded to assess its energy response. Conventional x-ray images with similar setup at voltages of 70 kVp and proton images using commercial Gafchromic EBT 2 and Kodak X-Omat V films were also taken for comparison purposes. Results: Images were successfully acquired and compared to x-ray kVp and proton EBT2/X-Omat film images. The spatial resolution of the CMOS detector image is subjectively comparable to the EBT2 and Kodak X-Omat V film images obtained at the same object-detector distance. X-rays have apparent higher spatial resolution than the CMOS. However, further studies with different commercial films using proton beam irradiation demonstrate that the distance of the detector to the object is important to the amount of proton scatter contributing to the proton image. Proton images obtained with films at different distances from the source indicate that proton scatter significantly affects the CMOS image quality. Conclusion: Proton radiographic images were successfully acquired at MGH using a CMOS active pixel sensor detector. The CMOS demonstrated spatial resolution subjectively comparable to films at the same object-detector distance. Further work will be done in order to establish the spatial and energy resolution of the CMOS detector for protons. The development and use of CMOS in proton radiography could allow in vivo proton range checks, patient setup QA, and real-time tumor tracking.« less

Recent progress on air-bearing slumping of segmented thin-shell mirrors for x-ray telescopes: experiments and numerical analysis

NASA Astrophysics Data System (ADS)

Zuo, Heng E.; Yao, Youwei; Chalifoux, Brandon D.; DeTienne, Michael D.; Heilmann, Ralf K.; Schattenburg, Mark L.

2017-08-01

Slumping (or thermal-shaping) of thin glass sheets onto high precision mandrels was used successfully by NASA Goddard Space Flight Center to fabricate the NuSTAR telescope. But this process requires long thermal cycles and produces mid-range spatial frequency errors due to the anti-stick mandrel coatings. Over the last few years, we have designed and tested non-contact horizontal slumping of round flat glass sheets floating on thin layers of nitrogen between porous air-bearings using fast position control algorithms and precise fiber sensing techniques during short thermal cycles. We recently built a finite element model with ADINA to simulate the viscoelastic behavior of glass during the slumping process. The model utilizes fluid-structure interaction (FSI) to understand the deformation and motion of glass under the influence of air flow. We showed that for the 2D axisymmetric model, experimental and numerical approaches have comparable results. We also investigated the impact of bearing permeability on the resulting shape of the wafers. A novel vertical slumping set-up is also under development to eliminate the undesirable influence of gravity. Progress towards generating mirrors for good angular resolution and low mid-range spatial frequency errors is reported.

Spatially varying geometric phase in classically entangled vector beams of light

NASA Astrophysics Data System (ADS)

King-Smith, Andrew; Leary, Cody

We present theoretical results describing a spatially varying geometric (Pancharatnam) phase present in vector modes of light, in which the polarization and transverse spatial mode degrees of freedom exhibit classical entanglement. We propose an experimental setup capable of characterizing this effect, in which a vector mode propagates through a Mach-Zehnder interferometer with a birefringent phase retarder present in one arm. Since the polarization state of a classically entangled light beam exhibits spatial variation across the transverse mode profile, the phase retarder gives rise to a spatially varying geometric phase in the beam propagating through it. When recombined with the reference beam from the other interferometer arm, the presence of the geometric phase is exhibited in the resulting interference pattern. We acknowledge funding from the Research Corporation for Science Advancement by means of a Cottrell College Science Award.

Understanding Variability in Beach Slope to Improve Forecasts of Storm-induced Water Levels

NASA Astrophysics Data System (ADS)

Doran, K. S.; Stockdon, H. F.; Long, J.

2014-12-01

The National Assessment of Hurricane-Induced Coastal Erosion Hazards combines measurements of beach morphology with storm hydrodynamics to produce forecasts of coastal change during storms for the Gulf of Mexico and Atlantic coastlines of the United States. Wave-induced water levels are estimated using modeled offshore wave height and period and measured beach slope (from dune toe to shoreline) through the empirical parameterization of Stockdon et al. (2006). Spatial and temporal variability in beach slope leads to corresponding variability in predicted wave setup and swash. Seasonal and storm-induced changes in beach slope can lead to differences on the order of a meter in wave runup elevation, making accurate specification of this parameter essential to skillful forecasts of coastal change. Spatial variation in beach slope is accounted for through alongshore averaging, but temporal variability in beach slope is not included in the final computation of the likelihood of coastal change. Additionally, input morphology may be years old and potentially very different than the conditions present during forecast storm. In order to improve our forecasts of hurricane-induced coastal erosion hazards, the temporal variability of beach slope must be included in the final uncertainty of modeled wave-induced water levels. Frequently collected field measurements of lidar-based beach morphology are examined for study sites in Duck, North Carolina, Treasure Island, Florida, Assateague Island, Virginia, and Dauphin Island, Alabama, with some records extending over a period of 15 years. Understanding the variability of slopes at these sites will help provide estimates of associated water level uncertainty which can then be applied to other areas where lidar observations are infrequent, and improve the overall skill of future forecasts of storm-induced coastal change. Stockdon, H. F., Holman, R. A., Howd, P. A., and Sallenger Jr, A. H. (2006). Empirical parameterization of setup,swash, and runup. Coastal engineering, 53(7), 573-588.

Sensitivity analysis of Repast computational ecology models with R/Repast.

PubMed

Prestes García, Antonio; Rodríguez-Patón, Alfonso

2016-12-01

Computational ecology is an emerging interdisciplinary discipline founded mainly on modeling and simulation methods for studying ecological systems. Among the existing modeling formalisms, the individual-based modeling is particularly well suited for capturing the complex temporal and spatial dynamics as well as the nonlinearities arising in ecosystems, communities, or populations due to individual variability. In addition, being a bottom-up approach, it is useful for providing new insights on the local mechanisms which are generating some observed global dynamics. Of course, no conclusions about model results could be taken seriously if they are based on a single model execution and they are not analyzed carefully. Therefore, a sound methodology should always be used for underpinning the interpretation of model results. The sensitivity analysis is a methodology for quantitatively assessing the effect of input uncertainty in the simulation output which should be incorporated compulsorily to every work based on in-silico experimental setup. In this article, we present R/Repast a GNU R package for running and analyzing Repast Simphony models accompanied by two worked examples on how to perform global sensitivity analysis and how to interpret the results.

A practical model for pressure probe system response estimation (with review of existing models)

NASA Astrophysics Data System (ADS)

Hall, B. F.; Povey, T.

2018-04-01

The accurate estimation of the unsteady response (bandwidth) of pneumatic pressure probe systems (probe, line and transducer volume) is a common practical problem encountered in the design of aerodynamic experiments. Understanding the bandwidth of the probe system is necessary to capture unsteady flow features accurately. Where traversing probes are used, the desired traverse speed and spatial gradients in the flow dictate the minimum probe system bandwidth required to resolve the flow. Existing approaches for bandwidth estimation are either complex or inaccurate in implementation, so probes are often designed based on experience. Where probe system bandwidth is characterized, it is often done experimentally, requiring careful experimental set-up and analysis. There is a need for a relatively simple but accurate model for estimation of probe system bandwidth. A new model is presented for the accurate estimation of pressure probe bandwidth for simple probes commonly used in wind tunnel environments; experimental validation is provided. An additional, simple graphical method for air is included for convenience.

Experimental Investigation of the Flow Structure over a Delta Wing Via Flow Visualization Methods.

PubMed

Shen, Lu; Chen, Zong-Nan; Wen, Chihyung

2018-04-23

It is well known that the flow field over a delta wing is dominated by a pair of counter rotating leading edge vortices (LEV). However, their mechanism is not well understood. The flow visualization technique is a promising non-intrusive method to illustrate the complex flow field spatially and temporally. A basic flow visualization setup consists of a high-powered laser and optic lenses to generate the laser sheet, a camera, a tracer particle generator, and a data processor. The wind tunnel setup, the specifications of devices involved, and the corresponding parameter settings are dependent on the flow features to be obtained. Normal smoke wire flow visualization uses a smoke wire to demonstrate the flow streaklines. However, the performance of this method is limited by poor spatial resolution when it is conducted in a complex flow field. Therefore, an improved smoke flow visualization technique has been developed. This technique illustrates the large-scale global LEV flow field and the small-scale shear layer flow structure at the same time, providing a valuable reference for later detailed particle image velocimetry (PIV) measurement. In this paper, the application of the improved smoke flow visualization and PIV measurement to study the unsteady flow phenomena over a delta wing is demonstrated. The procedure and cautions for conducting the experiment are listed, including wind tunnel setup, data acquisition, and data processing. The representative results show that these two flow visualization methods are effective techniques for investigating the three-dimensional flow field qualitatively and quantitatively.

Ultrashort polarization-tailored bichromatic fields

NASA Astrophysics Data System (ADS)

Kerbstadt, Stefanie; Englert, Lars; Bayer, Tim; Wollenhaupt, Matthias

2017-06-01

We present a novel concept for the generation of ultrashort polarization-shaped bichromatic laser fields. The scheme utilizes a 4f polarization pulse shaper based on a liquid crystal spatial light modulator for independent amplitude and phase modulation of femtosecond laser pulses. By choice of either a conventional (p) or a composite (p-s) polarizer in the Fourier plane, the shaper setup enables the generation of parallel linearly and orthogonal linearly polarized bichromatic fields. Additional use of a ? wave plate behind the setup yields co-rotating and counter-rotating circularly polarized bichromatic fields. The scheme allows to independently control the spectral amplitude, phase and polarization profile of the output fields, offering an enormous versatility of bichromatic waveforms.

[Comparison of four identical electronic noses and three measurement set-ups].

PubMed

Koczulla, R; Hattesohl, A; Biller, H; Hofbauer, J; Hohlfeld, J; Oeser, C; Wirtz, H; Jörres, R A

2011-08-01

Volatile organic compounds (VOCs) can be used as biomarkers in exhaled air. VOC profiles can be detected by an array of nanosensors of an electronic nose. These profiles can be analysed using bioinformatics. It is, however, not known whether different devices of the same model measure identically and to which extent different set-ups and the humidity of the inhaled air influence the VOC profile. Three different measuring set-ups were designed and three healthy control subjects were measured with each of them, using four devices of the same model (Cyranose 320™, Smiths Detection). The exhaled air was collected in a plastic bag. Either ambient air was used as reference (set-up Leipzig), or the reference air was humidified (100% relative humidity) (set-up Marburg and set-up Munich). In the set-up Marburg the subjects inhaled standardised medical air (Aer medicinalis Linde, AGA AB) out of a compressed air bottle through a demand valve; this air (after humidification) was also used as reference. In the set-up Leipzig the subjects inhaled VOC-filtered ambient air, in the set-up Munich unfiltered room air. The data were evaluated using either the real-time data or the changes in resistance as calculated by the device. The results were clearly dependent on the set-up. Apparently, humidification of the reference air could reduce the variance between devices, but this result was also dependent on the evaluation method used. When comparing the three subjects, the set-ups Munich and Marburg mapped these in a similar way, whereas not only the signals but also the variance of the set-up Leipzig were larger. Measuring VOCs with an electronic nose has not yet been standardised and the set-up significantly affects the results. As other researchers use further methods, it is currently not possible to draw generally accepted conclusions. More systematic tests are required to find the most sensitive and reliable but still feasible set-up so that comparability is improved. © Georg Thieme Verlag KG Stuttgart · New York.

Measuring uncertainty in dose delivered to the cochlea due to setup error during external beam treatment of patients with cancer of the head and neck.

PubMed

Yan, M; Lovelock, D; Hunt, M; Mechalakos, J; Hu, Y; Pham, H; Jackson, A

2013-12-01

To use Cone Beam CT scans obtained just prior to treatments of head and neck cancer patients to measure the setup error and cumulative dose uncertainty of the cochlea. Data from 10 head and neck patients with 10 planning CTs and 52 Cone Beam CTs taken at time of treatment were used in this study. Patients were treated with conventional fractionation using an IMRT dose painting technique, most with 33 fractions. Weekly radiographic imaging was used to correct the patient setup. The authors used rigid registration of the planning CT and Cone Beam CT scans to find the translational and rotational setup errors, and the spatial setup errors of the cochlea. The planning CT was rotated and translated such that the cochlea positions match those seen in the cone beam scans, cochlea doses were recalculated and fractional doses accumulated. Uncertainties in the positions and cumulative doses of the cochlea were calculated with and without setup adjustments from radiographic imaging. The mean setup error of the cochlea was 0.04 ± 0.33 or 0.06 ± 0.43 cm for RL, 0.09 ± 0.27 or 0.07 ± 0.48 cm for AP, and 0.00 ± 0.21 or -0.24 ± 0.45 cm for SI with and without radiographic imaging, respectively. Setup with radiographic imaging reduced the standard deviation of the setup error by roughly 1-2 mm. The uncertainty of the cochlea dose depends on the treatment plan and the relative positions of the cochlea and target volumes. Combining results for the left and right cochlea, the authors found the accumulated uncertainty of the cochlea dose per fraction was 4.82 (0.39-16.8) cGy, or 10.1 (0.8-32.4) cGy, with and without radiographic imaging, respectively; the percentage uncertainties relative to the planned doses were 4.32% (0.28%-9.06%) and 10.2% (0.7%-63.6%), respectively. Patient setup error introduces uncertainty in the position of the cochlea during radiation treatment. With the assistance of radiographic imaging during setup, the standard deviation of setup error reduced by 31%, 42%, and 54% in RL, AP, and SI direction, respectively, and consequently, the uncertainty of the mean dose to cochlea reduced more than 50%. The authors estimate that the effects of these uncertainties on the probability of hearing loss for an individual patient could be as large as 10%.

Measuring uncertainty in dose delivered to the cochlea due to setup error during external beam treatment of patients with cancer of the head and neck

PubMed Central

Yan, M.; Lovelock, D.; Hunt, M.; Mechalakos, J.; Hu, Y.; Pham, H.; Jackson, A.

2013-01-01

Purpose: To use Cone Beam CT scans obtained just prior to treatments of head and neck cancer patients to measure the setup error and cumulative dose uncertainty of the cochlea. Methods: Data from 10 head and neck patients with 10 planning CTs and 52 Cone Beam CTs taken at time of treatment were used in this study. Patients were treated with conventional fractionation using an IMRT dose painting technique, most with 33 fractions. Weekly radiographic imaging was used to correct the patient setup. The authors used rigid registration of the planning CT and Cone Beam CT scans to find the translational and rotational setup errors, and the spatial setup errors of the cochlea. The planning CT was rotated and translated such that the cochlea positions match those seen in the cone beam scans, cochlea doses were recalculated and fractional doses accumulated. Uncertainties in the positions and cumulative doses of the cochlea were calculated with and without setup adjustments from radiographic imaging. Results: The mean setup error of the cochlea was 0.04 ± 0.33 or 0.06 ± 0.43 cm for RL, 0.09 ± 0.27 or 0.07 ± 0.48 cm for AP, and 0.00 ± 0.21 or −0.24 ± 0.45 cm for SI with and without radiographic imaging, respectively. Setup with radiographic imaging reduced the standard deviation of the setup error by roughly 1–2 mm. The uncertainty of the cochlea dose depends on the treatment plan and the relative positions of the cochlea and target volumes. Combining results for the left and right cochlea, the authors found the accumulated uncertainty of the cochlea dose per fraction was 4.82 (0.39–16.8) cGy, or 10.1 (0.8–32.4) cGy, with and without radiographic imaging, respectively; the percentage uncertainties relative to the planned doses were 4.32% (0.28%–9.06%) and 10.2% (0.7%–63.6%), respectively. Conclusions: Patient setup error introduces uncertainty in the position of the cochlea during radiation treatment. With the assistance of radiographic imaging during setup, the standard deviation of setup error reduced by 31%, 42%, and 54% in RL, AP, and SI direction, respectively, and consequently, the uncertainty of the mean dose to cochlea reduced more than 50%. The authors estimate that the effects of these uncertainties on the probability of hearing loss for an individual patient could be as large as 10%. PMID:24320510

Stability, ghost, and strong coupling in nonrelativistic general covariant theory of gravity with {lambda}{ne}1

DOE Office of Scientific and Technical Information (OSTI.GOV)

Huang Yongqing; Wang Anzhong

2011-05-15

In this paper, we investigate three important issues: stability, ghost, and strong coupling, in the Horava-Melby-Thompson setup of the Horava-Lifshitz theory with {lambda}{ne}1, generalized recently by da Silva. We first develop the general linear scalar perturbations of the Friedmann-Robertson-Walker (FRW) universe with arbitrary spatial curvature and find that an immediate by-product of the setup is that, in all the inflationary models described by a scalar field, the FRW universe is necessarily flat. Applying them to the case of the Minkowski background, we find that it is stable, and, similar to the case {lambda}=1, the spin-0 graviton is eliminated. The vectormore » perturbations vanish identically in the Minkowski background. Thus, similar to general relativity, a free gravitational field in this setup is completely described by a spin-2 massless graviton, even with {lambda}{ne}1. We also study the ghost problem in the FRW background and find explicitly the ghost-free conditions. To study the strong coupling problem, we consider two different kinds of spacetimes, all with the presence of matter: one is cosmological, and the other is static. We find that the coupling becomes strong for a process with energy higher than M{sub pl}|c{sub {psi}|}{sup 5/2} in the flat FRW background and M{sub pl}|c{sub {psi}|}{sup 3} in a static weak gravitational field, where |c{sub {psi}|{identical_to}}|(1-{lambda})/(3{lambda}-1)|{sup 1/2}.« less

Optical scanner system for high resolution measurement of lubricant distributions on metal strips based on laser induced fluorescence

NASA Astrophysics Data System (ADS)

Holz, Philipp; Lutz, Christian; Brandenburg, Albrecht

2017-06-01

We present a new optical setup, which uses scanning mirrors in combination with laser induced fluorescence to monitor the spatial distribution of lubricant on metal sheets. Current trends in metal processing industry require forming procedures with increasing deformations. Thus a welldefined amount of lubricant is necessary to prevent the material from rupture, to reduce the wearing of the manufacturing tool as well as to prevent problems in post-deforming procedures. Therefore spatial resolved analysis of the thickness of lubricant layers is required. Current systems capture the lubricant distribution by moving sensor heads over the object along a linear axis. However the spatial resolution of these systems is insufficient at high strip speeds, e.g. at press plants. The presented technology uses fast rotating scanner mirrors to deflect a laser beam on the surface. This 405 nm laser light excites the autofluorescence of the investigated lubricants. A coaxial optic collects the fluorescence signal which is then spectrally filtered and recorded using a photomultiplier. From the acquired signal a two dimensional image is reconstructed in real time. This paper presents the sensor setup as well as its characterization. For the calibration of the system reference targets were prepared using an ink jet printer. The presented technology for the first time allows a spatial resolution in the millimetre range at production speed. The presented test system analyses an area of 300 x 300 mm² at a spatial resolution of 1.1 mm in less than 20 seconds. Despite this high speed of the measurement the limit of detection of the system described in this paper is better than 0.05 g/m² for the certified lubricant BAM K-009.

Minimum-norm cortical source estimation in layered head models is robust against skull conductivity error☆☆☆

PubMed Central

Stenroos, Matti; Hauk, Olaf

2013-01-01

The conductivity profile of the head has a major effect on EEG signals, but unfortunately the conductivity for the most important compartment, skull, is only poorly known. In dipole modeling studies, errors in modeled skull conductivity have been considered to have a detrimental effect on EEG source estimation. However, as dipole models are very restrictive, those results cannot be generalized to other source estimation methods. In this work, we studied the sensitivity of EEG and combined MEG + EEG source estimation to errors in skull conductivity using a distributed source model and minimum-norm (MN) estimation. We used a MEG/EEG modeling set-up that reflected state-of-the-art practices of experimental research. Cortical surfaces were segmented and realistically-shaped three-layer anatomical head models were constructed, and forward models were built with Galerkin boundary element method while varying the skull conductivity. Lead-field topographies and MN spatial filter vectors were compared across conductivities, and the localization and spatial spread of the MN estimators were assessed using intuitive resolution metrics. The results showed that the MN estimator is robust against errors in skull conductivity: the conductivity had a moderate effect on amplitudes of lead fields and spatial filter vectors, but the effect on corresponding morphologies was small. The localization performance of the EEG or combined MEG + EEG MN estimator was only minimally affected by the conductivity error, while the spread of the estimate varied slightly. Thus, the uncertainty with respect to skull conductivity should not prevent researchers from applying minimum norm estimation to EEG or combined MEG + EEG data. Comparing our results to those obtained earlier with dipole models shows that general judgment on the performance of an imaging modality should not be based on analysis with one source estimation method only. PMID:23639259

Rainfall estimation using microwave links. Results from an experimental setup in Luxembourg

NASA Astrophysics Data System (ADS)

Fenicia, Fabrizio; Matgen, Patrick; Pfister, Laurent

2010-05-01

Microwave links represent a valid alternative to traditional rainfall estimation methods. They are commonly used in mobile phone communication, and they constitute built-in widely distributed networks. Due to their ability of providing high temporal and spatial resolution measurements, their use is particularly suitable in urban settings. We here show results from an experimental setup in Luxembourg City, where two dual frequency links have been installed. The links cover a distance of about 4km, and measure power attenuation at 1 min. timestep. The links have been equipped with several recording raingauges, which measure rainfall in real-time communicating through a wireless connection. This set-up has been used to analyze in detail the mapping between attenuation and rainfall intensity, and gain insights into the potential accuracy of these instruments. In addition, we investigated the relation between rainfall and discharge response of the urban area of Luxembourg, which shows the potential utility of high frequency rainfall measurements for urban environments.

Laboratory-based micro-X-ray fluorescence setup using a von Hamos crystal spectrometer and a focused beam X-ray tube

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kayser, Y., E-mail: yves.kayser@psi.ch; Paul Scherrer Institut, 5232 Villigen-PSI; Błachucki, W.

2014-04-15

The high-resolution von Hamos bent crystal spectrometer of the University of Fribourg was upgraded with a focused X-ray beam source with the aim of performing micro-sized X-ray fluorescence (XRF) measurements in the laboratory. The focused X-ray beam source integrates a collimating optics mounted on a low-power micro-spot X-ray tube and a focusing polycapillary half-lens placed in front of the sample. The performances of the setup were probed in terms of spatial and energy resolution. In particular, the fluorescence intensity and energy resolution of the von Hamos spectrometer equipped with the novel micro-focused X-ray source and a standard high-power water-cooled X-raymore » tube were compared. The XRF analysis capability of the new setup was assessed by measuring the dopant distribution within the core of Er-doped SiO{sub 2} optical fibers.« less

Experimental setup for camera-based measurements of electrically and optically stimulated luminescence of silicon solar cells and wafers.

PubMed

Hinken, David; Schinke, Carsten; Herlufsen, Sandra; Schmidt, Arne; Bothe, Karsten; Brendel, Rolf

2011-03-01

We report in detail on the luminescence imaging setup developed within the last years in our laboratory. In this setup, the luminescence emission of silicon solar cells or silicon wafers is analyzed quantitatively. Charge carriers are excited electrically (electroluminescence) using a power supply for carrier injection or optically (photoluminescence) using a laser as illumination source. The luminescence emission arising from the radiative recombination of the stimulated charge carriers is measured spatially resolved using a camera. We give details of the various components including cameras, optical filters for electro- and photo-luminescence, the semiconductor laser and the four-quadrant power supply. We compare a silicon charged-coupled device (CCD) camera with a back-illuminated silicon CCD camera comprising an electron multiplier gain and a complementary metal oxide semiconductor indium gallium arsenide camera. For the detection of the luminescence emission of silicon we analyze the dominant noise sources along with the signal-to-noise ratio of all three cameras at different operation conditions.

Mobile measurement setup according to IEC 62220-1-2 for DQE determination on digital mammography systems

NASA Astrophysics Data System (ADS)

Greiter, Matthias B.; Hoeschen, Christoph

2010-04-01

The international standard IEC 62220-1-2 defines the measurement procedure for determination of the detective quantum efficiency (DQE) of digital x-ray imaging devices used in mammography. A mobile setup complying to this standard and adaptable to most current systems was constructed in the Helmholtz Zentrum München to allow for an objective technical comparison of current full field digital mammography units employed in mammography screening in Germany. This article demonstrates the setup's capabilities with a focus on the measurement uncertainties of all quantities contributing to DQE measurements. Evaluation of uncertainties encompasses results from measurements on a Sectra Microdose Mammography in clinical use, as well as on a prototype of a Fujifilm Amulet system at various radiation qualities. Both systems have a high spatial resolution of 50 μm × 50 μm. The modulation transfer function (MTF), noise power spectrum (NPS) and DQE of the Sectra MDM are presented in comparison to results previously published by other authors.

Field instrumentation and testing to study set-up phenomenon of piles driven into Louisiana clayey soils : final report.

DOT National Transportation Integrated Search

2016-07-01

This research study aims to investigate the pile set-up phenomenon for clayey soils and develop empirical models to predict pile set-up : resistance at certain time after end of driving (EOD). To fulfill the objective, a total number of twelve prestr...

Non-local currents and the structure of eigenstates in planar discrete systems with local symmetries

DOE Office of Scientific and Technical Information (OSTI.GOV)

Röntgen, M., E-mail: mroentge@physnet.uni-hamburg.de; Morfonios, C.V., E-mail: christian.morfonios@physnet.uni-hamburg.de; Diakonos, F.K., E-mail: fdiakono@phys.uoa.gr

Local symmetries are spatial symmetries present in a subdomain of a complex system. By using and extending a framework of so-called non-local currents that has been established recently, we show that one can gain knowledge about the structure of eigenstates in locally symmetric setups through a Kirchhoff-type law for the non-local currents. The framework is applicable to all discrete planar Schrödinger setups, including those with non-uniform connectivity. Conditions for spatially constant non-local currents are derived and we explore two types of locally symmetric subsystems in detail, closed-loops and one-dimensional open ended chains. We find these systems to support locally similarmore » or even locally symmetric eigenstates. - Highlights: • We extend the framework of non-local currents to discrete planar systems. • Structural information about the eigenstates is gained. • Conditions for the constancy of non-local currents are derived. • We use the framework to design two types of example systems featuring locally symmetric eigenstates.« less

Two-phase SLIPI for instantaneous LIF and Mie imaging of transient fuel sprays.

PubMed

Storch, Michael; Mishra, Yogeshwar Nath; Koegl, Matthias; Kristensson, Elias; Will, Stefan; Zigan, Lars; Berrocal, Edouard

2016-12-01

We report in this Letter a two-phase structured laser illumination planar imaging [two-pulse SLIPI (2p-SLIPI)] optical setup where the "lines structure" is spatially shifted by exploiting the birefringence property of a calcite crystal. By using this optical component and two cross-polarized laser pulses, the shift of the modulated pattern is not "time-limited" anymore. Consequently, two sub-images with spatially mismatched phases can be recorded within a few hundred of nanoseconds only, freezing the motion of the illuminated transient flow. In comparison with previous setups for instantaneous imaging based on structured illumination, the current optical design presents the advantage of having a single optical path, greatly simplifying its complexity. Due to its virtue of suppressing the effects from multiple light scattering, the 2p-SLIPI technique is applied here in an optically dense multi-jet direct-injection spark-ignition (DISI) ethanol spray. The fast formation of polydispersed droplets and appearance of voids after fuel injection are investigated by simultaneous detection of Mie scattering and liquid laser-induced fluorescence. The results allow for significantly improved analysis of the spray structure.

Detecting Forest Disturbance Events from MODIS and Landsat Time Series for the Conterminous United States

NASA Astrophysics Data System (ADS)

Zhang, G.; Ganguly, S.; Saatchi, S. S.; Hagen, S. C.; Harris, N.; Yu, Y.; Nemani, R. R.

2013-12-01

Spatial and temporal patterns of forest disturbance and regrowth processes are key for understanding aboveground terrestrial vegetation biomass and carbon stocks at regional-to-continental scales. The NASA Carbon Monitoring System (CMS) program seeks key input datasets, especially information related to impacts due to natural/man-made disturbances in forested landscapes of Conterminous U.S. (CONUS), that would reduce uncertainties in current carbon stock estimation and emission models. This study provides a end-to-end forest disturbance detection framework based on pixel time series analysis from MODIS (Moderate Resolution Imaging Spectroradiometer) and Landsat surface spectral reflectance data. We applied the BFAST (Breaks for Additive Seasonal and Trend) algorithm to the Normalized Difference Vegetation Index (NDVI) data for the time period from 2000 to 2011. A harmonic seasonal model was implemented in BFAST to decompose the time series to seasonal and interannual trend components in order to detect abrupt changes in magnitude and direction of these components. To apply the BFAST for whole CONUS, we built a parallel computing setup for processing massive time-series data using the high performance computing facility of the NASA Earth Exchange (NEX). In the implementation process, we extracted the dominant deforestation events from the magnitude of abrupt changes in both seasonal and interannual components, and estimated dates for corresponding deforestation events. We estimated the recovery rate for deforested regions through regression models developed between NDVI values and time since disturbance for all pixels. A similar implementation of the BFAST algorithm was performed over selected Landsat scenes (all Landsat cloud free data was used to generate NDVI from atmospherically corrected spectral reflectances) to demonstrate the spatial coherence in retrieval layers between MODIS and Landsat. In future, the application of this largely parallel disturbance detection setup will facilitate large scale processing and wall-to-wall mapping of forest disturbance and regrowth of Landsat data for the whole of CONUS. This exercise will aid in improving the present capabilities of the NASA CMS effort in reducing uncertainties in national-level estimates of biomass and carbon stocks.

Delayed-matching-to-place Task in a Dry Maze to Measure Spatial Working Memory in Mice

PubMed Central

Feng, Xi; Krukowski, Karen; Jopson, Timothy; Rosi, Susanna

2017-01-01

The delayed-matching-to-place (DMP) dry maze test is a variant of DMP water maze (Steele and Morris, 1999; Faizi et al., 2012) which measures spatial working/episodic-like learning and memory that depends on both hippocampal and cortical functions (Wang and Morris, 2010; Euston et al., 2012). Using this test we can detect normal aging related spatial working memory decline, as well as trauma induced working memory deficits. Furthermore, we recently reported that fractionated whole brain irradiation does not affect working memory in mice (Feng et al., 2016). Here we describe the experimental setup and procedures of this behavioral test. PMID:28944261

Geophysics in INSPIRE

NASA Astrophysics Data System (ADS)

Sőrés, László

2013-04-01

INSPIRE is a European directive to harmonize spatial data in Europe. Its' aim is to establish a transparent, multidisciplinary network of environmental information by using international standards and OGC web services. Spatial data themes defined in the annex of the directive cover 34 domains that are closely bundled to environment and spatial information. According to the INSPIRE roadmap all data providers must setup discovery, viewing and download services and restructure data stores to provide spatial data as defined by the underlying specifications by 2014 December 1. More than 3000 institutions are going to be involved in the progress. During the data specification process geophysics as an inevitable source of geo information was introduced to Annex II Geology. Within the Geology theme Geophysics is divided into core and extended model. The core model contains specifications for legally binding data provisioning and is going to be part of the Implementation Rules of the INSPIRE directives. To minimize the work load of obligatory data transformations the scope of the core model is very limited and simple. It covers the most essential geophysical feature types that are relevant in economic and environmental context. To fully support the use cases identified by the stake holders the extended model was developed. It contains a wide range of spatial object types for geophysical measurements, processed and interpreted results, and wrapper classes to help data providers in using the Observation and Measurements (O&M) standard for geophysical data exchange. Instead of introducing the traditional concept of "geophysical methods" at a high structural level the data model classifies measurements and geophysical models based on their spatial characteristics. Measurements are classified as geophysical station (point), geophysical profile (curve) and geophysical swath (surface). Generic classes for processing results and interpretation models are curve model (1D), surface model (2D), and solid model (3D). Both measurements and models are derived from O&M sampling features that may be linked to sampling procedures and observation results. Geophysical products are output of complex procedures and can precisely be described as chains of consecutive O&M observations. For describing geophysical processes and results the data model both supports the use of OGC standard XML encoding (SensorML, SWE, GML) and traditional industry standards (SPS, UKOOA, SEG formats). To control the scope of the model and to harmonize terminology an initial set of extendable code lists was developed. The attempt to create a hierarchical SKOS vocabulary of terms for geophysical methods, resource types, processes, properties and technical parameters was partly based on the work done in the eContentPlus GEOMIND project. The result is far from being complete, and the work must be continued in the future.

Numerical Weather Predictions Evaluation Using Spatial Verification Methods

NASA Astrophysics Data System (ADS)

Tegoulias, I.; Pytharoulis, I.; Kotsopoulos, S.; Kartsios, S.; Bampzelis, D.; Karacostas, T.

2014-12-01

During the last years high-resolution numerical weather prediction simulations have been used to examine meteorological events with increased convective activity. Traditional verification methods do not provide the desired level of information to evaluate those high-resolution simulations. To assess those limitations new spatial verification methods have been proposed. In the present study an attempt is made to estimate the ability of the WRF model (WRF -ARW ver3.5.1) to reproduce selected days with high convective activity during the year 2010 using those feature-based verification methods. Three model domains, covering Europe, the Mediterranean Sea and northern Africa (d01), the wider area of Greece (d02) and central Greece - Thessaly region (d03) are used at horizontal grid-spacings of 15km, 5km and 1km respectively. By alternating microphysics (Ferrier, WSM6, Goddard), boundary layer (YSU, MYJ) and cumulus convection (Kain-­-Fritsch, BMJ) schemes, a set of twelve model setups is obtained. The results of those simulations are evaluated against data obtained using a C-Band (5cm) radar located at the centre of the innermost domain. Spatial characteristics are well captured but with a variable time lag between simulation results and radar data. Acknowledgements: This research is co­financed by the European Union (European Regional Development Fund) and Greek national funds, through the action "COOPERATION 2011: Partnerships of Production and Research Institutions in Focused Research and Technology Sectors" (contract number 11SYN_8_1088 - DAPHNE) in the framework of the operational programme "Competitiveness and Entrepreneurship" and Regions in Transition (OPC II, NSRF 2007-­-2013).

Setup calibration and optimization for comparative digital holography

NASA Astrophysics Data System (ADS)

Baumbach, Torsten; Osten, Wolfgang; Kebbel, Volker; von Kopylow, Christoph; Jueptner, Werner

2004-08-01

With increasing globalization many enterprises decide to produce the components of their products at different locations all over the world. Consequently, new technologies and strategies for quality control are required. In this context the remote comparison of objects with regard to their shape or response on certain loads is getting more and more important for a variety of applications. For such a task the novel method of comparative digital holography is a suitable tool with interferometric sensitivity. With this technique the comparison in shape or deformation of two objects does not require the presence of both objects at the same place. In contrast to the well known incoherent techniques based on inverse fringe projection this new approach uses a coherent mask for the illumination of the sample object. The coherent mask is created by digital holography to enable the instant access to the complete optical information of the master object at any wanted place. The reconstruction of the mask is done by a spatial light modulator (SLM). The transmission of the digital master hologram to the place of comparison can be done via digital telecommunication networks. Contrary to other interferometric techniques this method enables the comparison of objects with different microstructure. In continuation of earlier reports our investigations are focused here on the analysis of the constraints of the setup with respect to the quality of the hologram reconstruction with a spatial light modulator. For successful measurements the selection of the appropriate reconstruction method and the adequate optical set-up is mandatory. In addition, the use of a SLM for the reconstruction requires the knowledge of its properties for the accomplishment of this method. The investigation results for the display properties such as display curvature, phase shift and the consequences for the technique will be presented. The optimization and the calibration of the set-up and its components lead to improved results in comparative digital holography with respect to the resolution. Examples of measurements before and after the optimization and calibration will be presented.

Introduction of a deformable x-ray CT polymer gel dosimetry system

NASA Astrophysics Data System (ADS)

Maynard, E.; Heath, E.; Hilts, M.; Jirasek, A.

2018-04-01

This study introduces the first 3D deformable dosimetry system based on x-ray computed tomography (CT) polymer gel dosimetry and establishes the setup reproducibility, deformation characteristics and dose response of the system. A N-isopropylacrylamide (NIPAM)-based gel formulation optimized for x-ray CT gel dosimetry was used, with a latex balloon serving as the deformable container and low-density polyethylene and polyvinyl alcohol providing additional oxygen barrier. Deformable gels were irradiated with a 6 MV calibration pattern to determine dosimetric response and a dosimetrically uniform plan to determine the spatial uniformity of the response. Wax beads were added to each gel as fiducial markers to track the deformation and setup of the gel dosimeters. From positions of the beads on CT images the setup reproducibility and the limits and reproducibility of gel deformation were determined. Comparison of gel measurements with Monte Carlo dose calculations found excellent dosimetric accuracy, comparable to that of an established non-deformable dosimetry system, with a mean dose discrepancy of 1.5% in the low-dose gradient region and a gamma pass rate of 97.9% using a 3%/3 mm criterion. The deformable dosimeter also showed good overall spatial dose uniformity throughout the dosimeter with some discrepancies within 20 mm of the edge of the container. Tracking of the beads within the dosimeter found that sub-millimetre setup accuracy is achievable with this system. The dosimeter was able to deform and relax when externally compressed by up to 30 mm without sustaining any permanent damage. Internal deformations in 3D produced average marker movements of up to 12 mm along the direction of compression. These deformations were also shown to be reproducible over 100 consecutive deformations. This work has established several important characteristics of a new deformable dosimetry system which shows promise for future clinical applications, including the validation of deformable dose accumulation algorithms.

Using Synchrotron Radiation Microtomography to Investigate Multi-scale Three-dimensional Microelectronic Packages.

PubMed

Carlton, Holly D; Elmer, John W; Li, Yan; Pacheco, Mario; Goyal, Deepak; Parkinson, Dilworth Y; MacDowell, Alastair A

2016-04-13

Synchrotron radiation micro-tomography (SRµT) is a non-destructive three-dimensional (3D) imaging technique that offers high flux for fast data acquisition times with high spatial resolution. In the electronics industry there is serious interest in performing failure analysis on 3D microelectronic packages, many which contain multiple levels of high-density interconnections. Often in tomography there is a trade-off between image resolution and the volume of a sample that can be imaged. This inverse relationship limits the usefulness of conventional computed tomography (CT) systems since a microelectronic package is often large in cross sectional area 100-3,600 mm(2), but has important features on the micron scale. The micro-tomography beamline at the Advanced Light Source (ALS), in Berkeley, CA USA, has a setup which is adaptable and can be tailored to a sample's properties, i.e., density, thickness, etc., with a maximum allowable cross-section of 36 x 36 mm. This setup also has the option of being either monochromatic in the energy range ~7-43 keV or operating with maximum flux in white light mode using a polychromatic beam. Presented here are details of the experimental steps taken to image an entire 16 x 16 mm system within a package, in order to obtain 3D images of the system with a spatial resolution of 8.7 µm all within a scan time of less than 3 min. Also shown are results from packages scanned in different orientations and a sectioned package for higher resolution imaging. In contrast a conventional CT system would take hours to record data with potentially poorer resolution. Indeed, the ratio of field-of-view to throughput time is much higher when using the synchrotron radiation tomography setup. The description below of the experimental setup can be implemented and adapted for use with many other multi-materials.

Optimal marker placement in hadrontherapy: intelligent optimization strategies with augmented Lagrangian pattern search.

PubMed

Altomare, Cristina; Guglielmann, Raffaella; Riboldi, Marco; Bellazzi, Riccardo; Baroni, Guido

2015-02-01

In high precision photon radiotherapy and in hadrontherapy, it is crucial to minimize the occurrence of geometrical deviations with respect to the treatment plan in each treatment session. To this end, point-based infrared (IR) optical tracking for patient set-up quality assessment is performed. Such tracking depends on external fiducial points placement. The main purpose of our work is to propose a new algorithm based on simulated annealing and augmented Lagrangian pattern search (SAPS), which is able to take into account prior knowledge, such as spatial constraints, during the optimization process. The SAPS algorithm was tested on data related to head and neck and pelvic cancer patients, and that were fitted with external surface markers for IR optical tracking applied for patient set-up preliminary correction. The integrated algorithm was tested considering optimality measures obtained with Computed Tomography (CT) images (i.e. the ratio between the so-called target registration error and fiducial registration error, TRE/FRE) and assessing the marker spatial distribution. Comparison has been performed with randomly selected marker configuration and with the GETS algorithm (Genetic Evolutionary Taboo Search), also taking into account the presence of organs at risk. The results obtained with SAPS highlight improvements with respect to the other approaches: (i) TRE/FRE ratio decreases; (ii) marker distribution satisfies both marker visibility and spatial constraints. We have also investigated how the TRE/FRE ratio is influenced by the number of markers, obtaining significant TRE/FRE reduction with respect to the random configurations, when a high number of markers is used. The SAPS algorithm is a valuable strategy for fiducial configuration optimization in IR optical tracking applied for patient set-up error detection and correction in radiation therapy, showing that taking into account prior knowledge is valuable in this optimization process. Further work will be focused on the computational optimization of the SAPS algorithm toward fast point-of-care applications. Copyright © 2014 Elsevier Inc. All rights reserved.

Experimental investigation of concentration and stable isotopes signals during organic contaminants back diffusion

NASA Astrophysics Data System (ADS)

Jin, Biao; Nika, Chrysanthi-Elisabeth; Rolle, Massimo

2017-04-01

Back diffusion of organic contaminants is often the cause of groundwater plumes' persistence and can significantly hinder cleanup interventions [1, 2]. In this study we perform a high-resolution investigation of back diffusion in a well-controlled flow-through laboratory setup. We considered cis-dichloroethene (cis-DCE) as model contaminant and we investigated its back diffusion from an impermeable source into a permeable saturated layer, in which advection-dominated flow conditions were established. We used concentration and stable chlorine isotope measurements to investigate the plumes originated by cis-DCE back diffusion in a series of flow-through experiments, performed in porous media with different hydraulic conductivity and at different seepage velocities (i.e., 0.4, 0.8 and 1.2 m/day). A two-centimeter thick agarose gel layer was placed at the bottom of the setup to simulate the source of cis-DCE back diffusion from an impervious layer. Intensive sampling (>1000 measurements) was carried out, including the withdrawal of aqueous samples at closely spaced (1 cm) outlet ports, as well as the high-resolution sampling of the source zone (agarose gel) at the end of each experiment. The transient behavior of the plumes originated by back diffusion was investigated by sampling the outlet ports at regular intervals in the experiments, each run for a total time corresponding to 15 pore volumes. The high-resolution sampling allowed us to resolve the spatial and temporal evolution of concentration and stable isotope gradients in the flow-through setup. In particular, steep concentration and stable isotope gradients were observed at the outlet. Lateral isotope gradients corresponding to chlorine isotope fractionation up to 20‰ were induced by cis-DCE back diffusion and subsequent advection-dominated transport in all flow-through experiments. A numerical modeling approach, tracking individually all chlorine isotopologues, based on the accurate parameterization of local dispersion, as well as on the values of aqueous diffusion coefficients and diffusion-induced isotope fractionation from a previous study [3], provided a good agreement with the experimental data. References [1] Mackay, D. M.; Cherry, J. A. Groundwater contamination: Pumpand-treat remediation. Environ. Sci. Technol. 1989, 23, 630-636. [2] Parker, B. L.; Chapman, S. W.; Guilbeault, M. A. Plume persistence caused by back diffusion from thin clay layers in a sand aquifer following TCE source-zone hydraulic isolation. J. Contam. Hydrol. 2008, 102, 19-19. [3] Jin, B., Rolle, M., Li, T., Haderlein, S.B., 2014. Diffusive fractionation of BTEX and chlorinated ethenes in aqueous solution: quantification of spatial isotope gradients. Environ. Sci. Technol. 48, 6141-6150.

Feedforward operation of a lens setup for large defocus and astigmatism correction

NASA Astrophysics Data System (ADS)

Verstraete, Hans R. G. W.; Almasian, MItra; Pozzi, Paolo; Bilderbeek, Rolf; Kalkman, Jeroen; Faber, Dirk J.; Verhaegen, Michel

2016-04-01

In this manuscript, we present a lens setup for large defocus and astigmatism correction. A deformable defocus lens and two rotational cylindrical lenses are used to control the defocus and astigmatism. The setup is calibrated using a simple model that allows the calculation of the lens inputs so that a desired defocus and astigmatism are actuated on the eye. The setup is tested by determining the feedforward prediction error, imaging a resolution target, and removing introduced aberrations.

Real-time 2D spatially selective MRI experiments: Comparative analysis of optimal control design methods

NASA Astrophysics Data System (ADS)

Maximov, Ivan I.; Vinding, Mads S.; Tse, Desmond H. Y.; Nielsen, Niels Chr.; Shah, N. Jon

2015-05-01

There is an increasing need for development of advanced radio-frequency (RF) pulse techniques in modern magnetic resonance imaging (MRI) systems driven by recent advancements in ultra-high magnetic field systems, new parallel transmit/receive coil designs, and accessible powerful computational facilities. 2D spatially selective RF pulses are an example of advanced pulses that have many applications of clinical relevance, e.g., reduced field of view imaging, and MR spectroscopy. The 2D spatially selective RF pulses are mostly generated and optimised with numerical methods that can handle vast controls and multiple constraints. With this study we aim at demonstrating that numerical, optimal control (OC) algorithms are efficient for the design of 2D spatially selective MRI experiments, when robustness towards e.g. field inhomogeneity is in focus. We have chosen three popular OC algorithms; two which are gradient-based, concurrent methods using first- and second-order derivatives, respectively; and a third that belongs to the sequential, monotonically convergent family. We used two experimental models: a water phantom, and an in vivo human head. Taking into consideration the challenging experimental setup, our analysis suggests the use of the sequential, monotonic approach and the second-order gradient-based approach as computational speed, experimental robustness, and image quality is key. All algorithms used in this work were implemented in the MATLAB environment and are freely available to the MRI community.

High Speed Computational Ghost Imaging via Spatial Sweeping

NASA Astrophysics Data System (ADS)

Wang, Yuwang; Liu, Yang; Suo, Jinli; Situ, Guohai; Qiao, Chang; Dai, Qionghai

2017-03-01

Computational ghost imaging (CGI) achieves single-pixel imaging by using a Spatial Light Modulator (SLM) to generate structured illuminations for spatially resolved information encoding. The imaging speed of CGI is limited by the modulation frequency of available SLMs, and sets back its practical applications. This paper proposes to bypass this limitation by trading off SLM’s redundant spatial resolution for multiplication of the modulation frequency. Specifically, a pair of galvanic mirrors sweeping across the high resolution SLM multiply the modulation frequency within the spatial resolution gap between SLM and the final reconstruction. A proof-of-principle setup with two middle end galvanic mirrors achieves ghost imaging as fast as 42 Hz at 80 × 80-pixel resolution, 5 times faster than state-of-the-arts, and holds potential for one magnitude further multiplication by hardware upgrading. Our approach brings a significant improvement in the imaging speed of ghost imaging and pushes ghost imaging towards practical applications.

Experimental investigation of the impact of compound-specific dispersion and electrostatic interactions on transient transport and solute breakthrough

NASA Astrophysics Data System (ADS)

Muniruzzaman, Muhammad; Rolle, Massimo

2017-02-01

This study investigates the effects of compound-specific diffusion/dispersion and electrochemical migration on transient solute transport in saturated porous media. We conducted laboratory bench-scale experiments, under advection-dominated regimes (seepage velocity: 0.5, 5, 25 m/d), in a quasi two-dimensional flow-through setup using pulse injection of multiple tracers (both uncharged and ionic species). Extensive sampling and measurement of solutes' concentrations (˜1500 samples; >3000 measurements) were performed at the outlet of the flow-through setup, at high spatial and temporal resolution. The experimental results show that compound-specific effects and charge-induced Coulombic interactions are important not only at low velocities and/or for steady state plumes but also for transient transport under high flow velocities. Such effects can lead to a remarkably different behavior of measured breakthrough curves also at very high Péclet numbers. To quantitatively interpret the experimental results, we used four modeling approaches: classical advection-dispersion equation (ADE), continuous time random walk (CTRW), dual-domain mass transfer model (DDMT), and a multicomponent ionic dispersion model. The latter is based on the multicomponent formulation of coupled diffusive/dispersive fluxes and was used to describe and explain the electrostatic effects of charged species. Furthermore, we determined experimentally the temporal profiles of the flux-related dilution index. This metric of mixing, used in connection with the traditional solute breakthrough curves, proved to be useful to correctly distinguish between plume spreading and mixing, particularly for the cases in which the sole analysis of integrated concentration breakthrough curves may lead to erroneous interpretation of plume dilution.

An 8-channel transceiver 7-channel receive RF coil setup for high SNR ultrahigh-field MRI of the shoulder at 7T.

PubMed

Rietsch, Stefan H G; Pfaffenrot, Viktor; Bitz, Andreas K; Orzada, Stephan; Brunheim, Sascha; Lazik-Palm, Andrea; Theysohn, Jens M; Ladd, Mark E; Quick, Harald H; Kraff, Oliver

2017-12-01

In this work, we present an 8-channel transceiver (Tx/Rx) 7-channel receive (Rx) radiofrequency (RF) coil setup for 7 T ultrahigh-field MR imaging of the shoulder. A C-shaped 8-channel Tx/Rx coil was combined with an anatomically close-fitting 7-channel Rx-only coil. The safety and performance parameters of this coil setup were evaluated on the bench and in phantom experiments. The 7 T MR imaging performance of the shoulder RF coil setup was evaluated in in vivo measurements using a 3D DESS, a 2D PD-weighted TSE sequence, and safety supervision based on virtual observation points. Distinct SNR gain and acceleration capabilities provided by the additional 7-channel Rx-only coil were demonstrated in phantom and in vivo measurements. The power efficiency indicated good performance of each channel and a maximum B 1 + of 19 μT if the hardware RF power limits of the MR system were exploited. MR imaging of the shoulder was demonstrated with clinically excellent image quality and submillimeter spatial resolution. The presented 8-channel transceiver 7-channel receive RF coil setup was successfully applied for in vivo 7 T MRI of the shoulder providing a clear SNR gain vs the transceiver array without the additional receive array. Homogeneous images across the shoulder region were obtained using 8-channel subject-specific phase-only RF shimming. © 2017 American Association of Physicists in Medicine.

Compact LED-based full-field optical coherence microscopy for high-resolution high-speed in vivo imaging

NASA Astrophysics Data System (ADS)

Ogien, Jonas; Dubois, Arnaud

2017-02-01

This work reports on a compact full-field optical coherence microscopy (FF-OCM) setup specifically designed to meet the needs for in vivo imaging, illuminated by a high-brightness broadband light emitting diode (LED). Broadband LEDs have spectra potentially large enough to provide imaging spatial resolutions similar to those reached using conventional halogen lamps, but their radiance can be much higher, which leads to high speed acquisition and makes in vivo imaging possible. We introduce a FF-OCM setup using a 2.3 W broadband LED, with an interferometer designed to be as compact as possible in order to provide the basis for a portable system that will make it possible to fully benefit from the capacity for in vivo imaging by providing the ability to image any region of interest in real-time. The interferometer part of the compact FF-OCM setup weighs 210 g for a size of 11x11x5 cm3. Using this setup, a sub-micron axial resolution was reached, with a detection sensitivity of 68 dB at an imaging rate of 250 Hz. Due to the high imaging rate, the sensitivity could be improved by accumulation while maintaining an acquisition time short enough for in vivo imaging. It was possible to reach a sensitivity of 75 dB at a 50 Hz imaging rate. High resolution in vivo human skin images were obtained with this setup and compared with images of excised human skin, showing high similarity.

Modelling of Dictyostelium discoideum movement in a linear gradient of chemoattractant.

PubMed

Eidi, Zahra; Mohammad-Rafiee, Farshid; Khorrami, Mohammad; Gholami, Azam

2017-11-15

Chemotaxis is a ubiquitous biological phenomenon in which cells detect a spatial gradient of chemoattractant, and then move towards the source. Here we present a position-dependent advection-diffusion model that quantitatively describes the statistical features of the chemotactic motion of the social amoeba Dictyostelium discoideum in a linear gradient of cAMP (cyclic adenosine monophosphate). We fit the model to experimental trajectories that are recorded in a microfluidic setup with stationary cAMP gradients and extract the diffusion and drift coefficients in the gradient direction. Our analysis shows that for the majority of gradients, both coefficients decrease over time and become negative as the cells crawl up the gradient. The extracted model parameters also show that besides the expected drift in the direction of the chemoattractant gradient, we observe a nonlinear dependency of the corresponding variance on time, which can be explained by the model. Furthermore, the results of the model show that the non-linear term in the mean squared displacement of the cell trajectories can dominate the linear term on large time scales.

Assessing the spatial and temporal variations of water quality in lowland areas, Northern Germany

NASA Astrophysics Data System (ADS)

Lam, Q. D.; Schmalz, B.; Fohrer, N.

2012-05-01

SummaryThe pollution of rivers and streams with agro-chemical contaminants has become one of the most crucial environmental problems in the world. The assessment of spatial and temporal variations of water quality influenced by point and diffuse source pollution is necessary to manage the environment sustainably in various watershed scales. The overall objectives of this study were to assess the transferability of parameter sets between lowland catchments on different scales using the ecohydrological model SWAT (Soil and Water Assessment Tool) and to evaluate the temporal and spatial patterns of water quality in the whole catchments before and after implementation of best management practices (BMPs). The study area Kielstau catchment is located in Northern Germany as typical example of lowland - flood plain landscape. Sandy, loamy and peat soils are characteristic for this area. Land use is dominated by arable land and pasture. In this study we examined two catchment areas including Kielstau catchment 50 km2 and its subcatchment, namely Moorau, with the area of 7.6 km2. The water quality of these catchments is not only influenced by diffuse sources from agricultural areas but also by point sources from municipal wastewater treatment plants (WWTPs). Diffuse sources as well as punctual entries from the WWTPs are considered in the model set-up. For this study, the calibration and validation of the model were carried out in a daily time step for flow and nutrients. The results indicate that the parameter sets could be transferred in lowland catchments with similar environmental conditions. Shallow groundwater is the major contributor to total nitrate load in the stream accounting for about 93% of the total nitrate load, while only about 7% originates in surface runoff and lateral flow. The study also indicates that applying a spatially distributed modeling approach was an appropriate method to generate source maps showing the spatial distribution of TN load from hydrologic response units (HRUs) as well as from subbasins and to identify the crucial pollution areas within a watershed whose management practices can be improved to control more effectively nitrogen loading to water bodies.

Conceptualizing the self organization of cloud cells, cold pools and soil moisture

NASA Astrophysics Data System (ADS)

Henneberg, O.; Härter, J. O. M.

2017-12-01

Convective-type cloud is the cause of extreme, short-duration precipitation, challenging weather forecasting and climate modeling. Such extremes are ultimately tied to the uneven redistribution of water in the course of convective self organization and possibly the interaction between clouds [1]. Over land, moisture is organized through: cloud cells, cold pools, and the land surface. Each of these generally capture and release moisture at different rates, e.g. cold pools form quickly but dissipate slowly. Such distinct timescales have implications for the emergent dynamics.Incorporating such distinct time scales, we here present a conceptual model for the spatio-temporal self organization within the diurnal cycle of convection and describe the possible role of soil moisture memory in serving as a predisposition for extremes.We bolster our findings by high resolution, large eddy simulations: Sensible and latent heat fluxes, which are determined by the soil moisture content, can influence the stability of the atmosphere. The onset of initial precipitation is affected by such heat release, which in turn is modified by previous precipitation. Starting from static heat sources, we quantify how their spatial distribution affects the self organization and thus onset, duration and strength of precipitation events in an idealized model setup. Furthermore, an extended model setup with inhomogeneous, self organized distributions of latent and sensible heat fluxes is used to contrast how emergent soil moisture patterns impact on the selforganization structure of convection. Our findings may have implications for the role of land use changes regarding the development of extreme convective precipitation.Reference[1] Moseley et al. (2016) "Intensification of convective extremes driven by cloud-cloud interaction", Nature Geosc. , 9, 748-752

Non-invasive measurement of frog skin reflectivity in high spatial resolution using a dual hyperspectral approach.

PubMed

Pinto, Francisco; Mielewczik, Michael; Liebisch, Frank; Walter, Achim; Greven, Hartmut; Rascher, Uwe

2013-01-01

Most spectral data for the amphibian integument are limited to the visible spectrum of light and have been collected using point measurements with low spatial resolution. In the present study a dual camera setup consisting of two push broom hyperspectral imaging systems was employed, which produces reflectance images between 400 and 2500 nm with high spectral and spatial resolution and a high dynamic range. We briefly introduce the system and document the high efficiency of this technique analyzing exemplarily the spectral reflectivity of the integument of three arboreal anuran species (Litoria caerulea, Agalychnis callidryas and Hyla arborea), all of which appear green to the human eye. The imaging setup generates a high number of spectral bands within seconds and allows non-invasive characterization of spectral characteristics with relatively high working distance. Despite the comparatively uniform coloration, spectral reflectivity between 700 and 1100 nm differed markedly among the species. In contrast to H. arborea, L. caerulea and A. callidryas showed reflection in this range. For all three species, reflectivity above 1100 nm is primarily defined by water absorption. Furthermore, the high resolution allowed examining even small structures such as fingers and toes, which in A. callidryas showed an increased reflectivity in the near infrared part of the spectrum. Hyperspectral imaging was found to be a very useful alternative technique combining the spectral resolution of spectrometric measurements with a higher spatial resolution. In addition, we used Digital Infrared/Red-Edge Photography as new simple method to roughly determine the near infrared reflectivity of frog specimens in field, where hyperspectral imaging is typically difficult.

Optical encryption of digital data in form of quick response code using spatially incoherent illumination

NASA Astrophysics Data System (ADS)

Cheremkhin, Pavel A.; Krasnov, Vitaly V.; Rodin, Vladislav G.; Starikov, Rostislav S.

2016-11-01

Applications of optical methods for encryption purposes have been attracting interest of researchers for decades. The most popular are coherent techniques such as double random phase encoding. Its main advantage is high security due to transformation of spectrum of image to be encrypted into white spectrum via use of first phase random mask which allows for encrypted images with white spectra. Downsides are necessity of using holographic registration scheme and speckle noise occurring due to coherent illumination. Elimination of these disadvantages is possible via usage of incoherent illumination. In this case, phase registration no longer matters, which means that there is no need for holographic setup, and speckle noise is gone. Recently, encryption of digital information in form of binary images has become quite popular. Advantages of using quick response (QR) code in capacity of data container for optical encryption include: 1) any data represented as QR code will have close to white (excluding zero spatial frequency) Fourier spectrum which have good overlapping with encryption key spectrum; 2) built-in algorithm for image scale and orientation correction which simplifies decoding of decrypted QR codes; 3) embedded error correction code allows for successful decryption of information even in case of partial corruption of decrypted image. Optical encryption of digital data in form QR codes using spatially incoherent illumination was experimentally implemented. Two liquid crystal spatial light modulators were used in experimental setup for QR code and encrypting kinoform imaging respectively. Decryption was conducted digitally. Successful decryption of encrypted QR codes is demonstrated.

Estimating Function Approaches for Spatial Point Processes

NASA Astrophysics Data System (ADS)

Deng, Chong

Spatial point pattern data consist of locations of events that are often of interest in biological and ecological studies. Such data are commonly viewed as a realization from a stochastic process called spatial point process. To fit a parametric spatial point process model to such data, likelihood-based methods have been widely studied. However, while maximum likelihood estimation is often too computationally intensive for Cox and cluster processes, pairwise likelihood methods such as composite likelihood, Palm likelihood usually suffer from the loss of information due to the ignorance of correlation among pairs. For many types of correlated data other than spatial point processes, when likelihood-based approaches are not desirable, estimating functions have been widely used for model fitting. In this dissertation, we explore the estimating function approaches for fitting spatial point process models. These approaches, which are based on the asymptotic optimal estimating function theories, can be used to incorporate the correlation among data and yield more efficient estimators. We conducted a series of studies to demonstrate that these estmating function approaches are good alternatives to balance the trade-off between computation complexity and estimating efficiency. First, we propose a new estimating procedure that improves the efficiency of pairwise composite likelihood method in estimating clustering parameters. Our approach combines estimating functions derived from pairwise composite likeli-hood estimation and estimating functions that account for correlations among the pairwise contributions. Our method can be used to fit a variety of parametric spatial point process models and can yield more efficient estimators for the clustering parameters than pairwise composite likelihood estimation. We demonstrate its efficacy through a simulation study and an application to the longleaf pine data. Second, we further explore the quasi-likelihood approach on fitting second-order intensity function of spatial point processes. However, the original second-order quasi-likelihood is barely feasible due to the intense computation and high memory requirement needed to solve a large linear system. Motivated by the existence of geometric regular patterns in the stationary point processes, we find a lower dimension representation of the optimal weight function and propose a reduced second-order quasi-likelihood approach. Through a simulation study, we show that the proposed method not only demonstrates superior performance in fitting the clustering parameter but also merits in the relaxation of the constraint of the tuning parameter, H. Third, we studied the quasi-likelihood type estimating funciton that is optimal in a certain class of first-order estimating functions for estimating the regression parameter in spatial point process models. Then, by using a novel spectral representation, we construct an implementation that is computationally much more efficient and can be applied to more general setup than the original quasi-likelihood method.

Grating-based tomography applications in biomedical engineering

NASA Astrophysics Data System (ADS)

Schulz, Georg; Thalmann, Peter; Khimchenko, Anna; Müller, Bert

2017-10-01

For the investigation of soft tissues or tissues consisting of soft and hard tissues on the microscopic level, hard X-ray phase tomography has become one of the most suitable imaging techniques. Besides other phase contrast methods grating interferometry has the advantage of higher sensitivity than inline methods and the quantitative results. One disadvantage of the conventional double-grating setup (XDGI) compared to inline methods is the limitation of the spatial resolution. This limitation can be overcome by removing the analyser grating resulting in a single-grating setup (XSGI). In order to verify the performance of XSGI concerning contrast and spatial resolution, a quantitative comparison of XSGI and XDGI tomograms of a human nerve was performed. Both techniques provide sufficient contrast to allow for the distinction of tissue types. The spatial resolution of the two-fold binned XSGI data set is improved by a factor of two in comparison to XDGI which underlies its performance in tomography of soft tissues. Another application for grating-based X-ray phase tomography is the simultaneous visualization of soft and hard tissues of a plaque-containing coronary artery. The simultaneous visualization of both tissues is important for the segmentation of the lumen. The segmented data can be used for flow simulations in order to obtain information about the three-dimensional wall shear stress distribution needed for the optimization of mechano-sensitive nanocontainers used for drug delivery.

Reducing errors in aircraft atmospheric inversion estimates of point-source emissions: the Aliso Canyon natural gas leak as a natural tracer experiment

NASA Astrophysics Data System (ADS)

Gourdji, S. M.; Yadav, V.; Karion, A.; Mueller, K. L.; Conley, S.; Ryerson, T.; Nehrkorn, T.; Kort, E. A.

2018-04-01

Urban greenhouse gas (GHG) flux estimation with atmospheric measurements and modeling, i.e. the ‘top-down’ approach, can potentially support GHG emission reduction policies by assessing trends in surface fluxes and detecting anomalies from bottom-up inventories. Aircraft-collected GHG observations also have the potential to help quantify point-source emissions that may not be adequately sampled by fixed surface tower-based atmospheric observing systems. Here, we estimate CH4 emissions from a known point source, the Aliso Canyon natural gas leak in Los Angeles, CA from October 2015–February 2016, using atmospheric inverse models with airborne CH4 observations from twelve flights ≈4 km downwind of the leak and surface sensitivities from a mesoscale atmospheric transport model. This leak event has been well-quantified previously using various methods by the California Air Resources Board, thereby providing high confidence in the mass-balance leak rate estimates of (Conley et al 2016), used here for comparison to inversion results. Inversions with an optimal setup are shown to provide estimates of the leak magnitude, on average, within a third of the mass balance values, with remaining errors in estimated leak rates predominantly explained by modeled wind speed errors of up to 10 m s‑1, quantified by comparing airborne meteorological observations with modeled values along the flight track. An inversion setup using scaled observational wind speed errors in the model-data mismatch covariance matrix is shown to significantly reduce the influence of transport model errors on spatial patterns and estimated leak rates from the inversions. In sum, this study takes advantage of a natural tracer release experiment (i.e. the Aliso Canyon natural gas leak) to identify effective approaches for reducing the influence of transport model error on atmospheric inversions of point-source emissions, while suggesting future potential for integrating surface tower and aircraft atmospheric GHG observations in top-down urban emission monitoring systems.

The spectral imaging facility: Setup characterization

DOE Office of Scientific and Technical Information (OSTI.GOV)

De Angelis, Simone, E-mail: simone.deangelis@iaps.inaf.it; De Sanctis, Maria Cristina; Manzari, Paola Olga

2015-09-15

The SPectral IMager (SPIM) facility is a laboratory visible infrared spectrometer developed to support space borne observations of rocky bodies of the solar system. Currently, this laboratory setup is used to support the DAWN mission, which is in its journey towards the asteroid 1-Ceres, and to support the 2018 Exo-Mars mission in the spectral investigation of the Martian subsurface. The main part of this setup is an imaging spectrometer that is a spare of the DAWN visible infrared spectrometer. The spectrometer has been assembled and calibrated at Selex ES and then installed in the facility developed at the INAF-IAPS laboratorymore » in Rome. The goal of SPIM is to collect data to build spectral libraries for the interpretation of the space borne and in situ hyperspectral measurements of planetary materials. Given its very high spatial resolution combined with the imaging capability, this instrument can also help in the detailed study of minerals and rocks. In this paper, the instrument setup is first described, and then a series of test measurements, aimed to the characterization of the main subsystems, are reported. In particular, laboratory tests have been performed concerning (i) the radiation sources, (ii) the reference targets, and (iii) linearity of detector response; the instrumental imaging artifacts have also been investigated.« less

SU-E-T-657: Quantitative Assessment of Plan Robustness for Helical Tomotherapy for Head and Neck Cancer Radiotherapy

DOE Office of Scientific and Technical Information (OSTI.GOV)

Matney, J; Lian, J; Chera, B

2015-06-15

Introduction: Geometric uncertainties in daily patient setup can lead to variations in the planned dose, especially when using highly conformal techniques such as helical Tomotherapy. To account for the potential effect of geometric uncertainty, our clinical practice is to expand critical structures by 3mm expansion into planning risk volumes (PRV). The PRV concept assumes the spatial dose cloud is insensitive to patient positioning. However, no tools currently exist to determine if a Tomotherapy plan is robust to the effects of daily setup variation. We objectively quantified the impact of geometric uncertainties on the 3D doses to critical normal tissues duringmore » helical Tomotherapy. Methods: Using a Matlab-based program created and validated by Accuray (Madison, WI), the planned Tomotherapy delivery sinogram recalculated dose on shifted CT datasets. Ten head and neck patients were selected for analysis. To simulate setup uncertainty, the patient anatomy was shifted ±3mm in the longitudinal, lateral and vertical axes. For each potential shift, the recalculated doses to various critical normal tissues were compared to the doses delivered to the PRV in the original plan Results: 18 shifted scenarios created from Tomotherapy plans for three patients with head and neck cancers were analyzed. For all simulated setup errors, the maximum doses to the brainstem, spinal cord, parotids and cochlea were no greater than 0.6Gy of the respective original PRV maximum. Despite 3mm setup shifts, the minimum dose delivered to 95% of the CTVs and PTVs were always within 0.4Gy of the original plan. Conclusions: For head and neck sites treated with Tomotherapy, the use of a 3mm PRV expansion provide a reasonable estimate of the dosimetric effects of 3mm setup uncertainties. Similarly, target coverage appears minimally effected by a 3mm setup uncertainty. Data from a larger number of patients will be presented. Future work will include other anatomical sites.« less

Analysis of image sharpness reproducibility on a novel engineered micro-CT scanner with variable geometry and embedded recalibration software.

PubMed

Panetta, D; Belcari, N; Del Guerra, A; Bartolomei, A; Salvadori, P A

2012-04-01

This study investigates the reproducibility of the reconstructed image sharpness, after modifications of the geometry setup, for a variable magnification micro-CT (μCT) scanner. All the measurements were performed on a novel engineered μCT scanner for in vivo imaging of small animals (Xalt), which has been recently built at the Institute of Clinical Physiology of the National Research Council (IFC-CNR, Pisa, Italy), in partnership with the University of Pisa. The Xalt scanner is equipped with an integrated software for on-line geometric recalibration, which will be used throughout the experiments. In order to evaluate the losses of image quality due to modifications of the geometry setup, we have made 22 consecutive acquisitions by changing alternatively the system geometry between two different setups (Large FoV - LF, and High Resolution - HR). For each acquisition, the tomographic images have been reconstructed before and after the on-line geometric recalibration. For each reconstruction, the image sharpness was evaluated using two different figures of merit: (i) the percentage contrast on a small bar pattern of fixed frequency (f = 5.5 lp/mm for the LF setup and f = 10 lp/mm for the HR setup) and (ii) the image entropy. We have found that, due to the small-scale mechanical uncertainty (in the order of the voxel size), a recalibration is necessary for each geometric setup after repositioning of the system's components; the resolution losses due to the lack of recalibration are worse for the HR setup (voxel size = 18.4 μm). The integrated on-line recalibration algorithm of the Xalt scanner allowed to perform the recalibration quickly, by restoring the spatial resolution of the system to the reference resolution obtained after the initial (off-line) calibration. Copyright © 2011 Associazione Italiana di Fisica Medica. Published by Elsevier Ltd. All rights reserved.

Commissioning of the PRIOR proton microscope

DOE PAGES

Varentsov, D.; Antonov, O.; Bakhmutova, A.; ...

2016-02-18

Recently, a new high energy proton microscopy facility PRIOR (Proton Microscope for FAIR Facility for Anti-proton and Ion Research) has been designed, constructed, and successfully commissioned at GSI Helmholtzzentrum für Schwerionenforschung (Darmstadt, Germany). As a result of the experiments with 3.5–4.5 GeV proton beams delivered by the heavy ion synchrotron SIS-18 of GSI, 30 μm spatial and 10 ns temporal resolutions of the proton microscope have been demonstrated. A new pulsed power setup for studying properties of matter under extremes has been developed for the dynamic commissioning of the PRIOR facility. This study describes the PRIOR setup as well asmore » the results of the first static and dynamic protonradiography experiments performed at GSI.« less

Commissioning of the PRIOR proton microscope

DOE Office of Scientific and Technical Information (OSTI.GOV)

Varentsov, D.; Antonov, O.; Bakhmutova, A.

Recently, a new high energy proton microscopy facility PRIOR (Proton Microscope for FAIR Facility for Anti-proton and Ion Research) has been designed, constructed, and successfully commissioned at GSI Helmholtzzentrum für Schwerionenforschung (Darmstadt, Germany). As a result of the experiments with 3.5–4.5 GeV proton beams delivered by the heavy ion synchrotron SIS-18 of GSI, 30 μm spatial and 10 ns temporal resolutions of the proton microscope have been demonstrated. A new pulsed power setup for studying properties of matter under extremes has been developed for the dynamic commissioning of the PRIOR facility. This study describes the PRIOR setup as well asmore » the results of the first static and dynamic protonradiography experiments performed at GSI.« less

A Flexible Spatio-Temporal Model for Air Pollution with Spatial and Spatio-Temporal Covariates.

PubMed

Lindström, Johan; Szpiro, Adam A; Sampson, Paul D; Oron, Assaf P; Richards, Mark; Larson, Tim V; Sheppard, Lianne

2014-09-01

The development of models that provide accurate spatio-temporal predictions of ambient air pollution at small spatial scales is of great importance for the assessment of potential health effects of air pollution. Here we present a spatio-temporal framework that predicts ambient air pollution by combining data from several different monitoring networks and deterministic air pollution model(s) with geographic information system (GIS) covariates. The model presented in this paper has been implemented in an R package, SpatioTemporal, available on CRAN. The model is used by the EPA funded Multi-Ethnic Study of Atherosclerosis and Air Pollution (MESA Air) to produce estimates of ambient air pollution; MESA Air uses the estimates to investigate the relationship between chronic exposure to air pollution and cardiovascular disease. In this paper we use the model to predict long-term average concentrations of NO x in the Los Angeles area during a ten year period. Predictions are based on measurements from the EPA Air Quality System, MESA Air specific monitoring, and output from a source dispersion model for traffic related air pollution (Caline3QHCR). Accuracy in predicting long-term average concentrations is evaluated using an elaborate cross-validation setup that accounts for a sparse spatio-temporal sampling pattern in the data, and adjusts for temporal effects. The predictive ability of the model is good with cross-validated R 2 of approximately 0.7 at subject sites. Replacing four geographic covariate indicators of traffic density with the Caline3QHCR dispersion model output resulted in very similar prediction accuracy from a more parsimonious and more interpretable model. Adding traffic-related geographic covariates to the model that included Caline3QHCR did not further improve the prediction accuracy.

Wave characteristics and hydrodynamics at a reef island on Dongsha Atoll in the South China Sea

NASA Astrophysics Data System (ADS)

Su, Shih-Feng; Chiang, Te-Yun; Lin, Yi-Hao; Chen, Jia-Lin

2017-04-01

An inhabited coral reef island, located at the Dongsha Atoll in the northern South China Sea, is frequently attacked by typhoon waves. Coastline has suffered severe erosion and coastal inundation during certain typhoon paths. Groins were therefore built surround the island to stabilize the shoreline. However, the engineering structures redistributed the characteristics of hydrodynamics, which resulted in the disappearance of seasonal sediment movements on the reef flat. Additionally, infragravity waves (20-200 sec) on reefs have be found to generate strong resonance during energetic wave events. To understand wave characteristics and nearshore circulations around the reef under typical waves and typhoon waves, a phase-averaged and a phase-resolving wave models validated with previous field experiments are used to simulate significant wave height, wave setup and reef circulations. The phase-resolving model is specially applied to investigate infragravity motions around the island. Model results will illustrate the spatial variations of infragravity-wave field and wave-induced nearshore circulation and can provide information for coastal management and protection.

FAST TRACK COMMUNICATION: \\ {P}\\ {T}-symmetry, Cartan decompositions, Lie triple systems and Krein space-related Clifford algebras

NASA Astrophysics Data System (ADS)

Günther, Uwe; Kuzhel, Sergii

2010-10-01

Gauged \\ {P}\\ {T} quantum mechanics (PTQM) and corresponding Krein space setups are studied. For models with constant non-Abelian gauge potentials and extended parity inversions compact and noncompact Lie group components are analyzed via Cartan decompositions. A Lie-triple structure is found and an interpretation as \\ {P}\\ {T}-symmetrically generalized Jaynes-Cummings model is possible with close relation to recently studied cavity QED setups with transmon states in multilevel artificial atoms. For models with Abelian gauge potentials a hidden Clifford algebra structure is found and used to obtain the fundamental symmetry of Krein space-related J-self-adjoint extensions for PTQM setups with ultra-localized potentials.

Modeling the interaction between sedimentary organic carbon and infaunal macrobenthos and their temporal (1980-2000) variation in the southern North Sea

NASA Astrophysics Data System (ADS)

Zhang, Wenyan; Daewel, Ute; Schrum, Corinna; Wirtz, Kai

2017-04-01

The mutual dependency between sedimentary total organic carbon (TOC) and benthic macrofauna is here for the first time quantified by a mechanistic model. The model describes (i) the vertical distribution of infaunal biomass resulting from a trade-off between nutritional benefit (quantity and quality of TOC) and the costs of burial (respiration), and (ii) the variable distribution of TOC being in turn shaped by bioturbation of local macrobenthos. In contrast to state-of-the-art diagenetic models, our approach resolves variations of bioturbation both in space and time, which depend on the macrobenthic community structure and biomass. Our implementation of the dynamic interaction between sedimentary organic carbon and infaunal macrobenthos is able to capture a real-time benthic response to both depositional and erosional events and provides improved estimates of the material exchange flux at the sediment-water interface. Applications to literature data for the North Sea demonstrate the robustness and accuracy of the model and its potential as an analysis tool for the status of TOC as well as benthic infauna in marine sediments. The model was coupled to two different 3D hydrodynamic-ecological models (ECOSMO and MOSSCO for 10 x 10 and 1 x 1 km setups, respectively) to evaluate the robustness of the estimates with respect to variable forcings on different spatial scales. Hindcast simulations of the benthic status in the southern North Sea from 1980 to 2000 indicate a relatively stable pattern at large temporal and spatial scales but significant variations at small scales.

A self-consistent transport model for molecular conduction based on extended Hückel theory with full three-dimensional electrostatics

NASA Astrophysics Data System (ADS)

Zahid, F.; Paulsson, M.; Polizzi, E.; Ghosh, A. W.; Siddiqui, L.; Datta, S.

2005-08-01

We present a transport model for molecular conduction involving an extended Hückel theoretical treatment of the molecular chemistry combined with a nonequilibrium Green's function treatment of quantum transport. The self-consistent potential is approximated by CNDO (complete neglect of differential overlap) method and the electrostatic effects of metallic leads (bias and image charges) are included through a three-dimensional finite element method. This allows us to capture spatial details of the electrostatic potential profile, including effects of charging, screening, and complicated electrode configurations employing only a single adjustable parameter to locate the Fermi energy. As this model is based on semiempirical methods it is computationally inexpensive and flexible compared to ab initio models, yet at the same time it is able to capture salient qualitative features as well as several relevant quantitative details of transport. We apply our model to investigate recent experimental data on alkane dithiol molecules obtained in a nanopore setup. We also present a comparison study of single molecule transistors and identify electronic properties that control their performance.

Numerical modelling of distributed vibration sensor based on phase-sensitive OTDR

NASA Astrophysics Data System (ADS)

Masoudi, A.; Newson, T. P.

2017-04-01

A Distributed Vibration Sensor Based on Phase-Sensitive OTDR is numerically modeled. The advantage of modeling the building blocks of the sensor individually and combining the blocks to analyse the behavior of the sensing system is discussed. It is shown that the numerical model can accurately imitate the response of the experimental setup to dynamic perturbations a signal processing procedure similar to that used to extract the phase information from sensing setup.

A spatio-temporally compensated acousto-optic scanner for two-photon microscopy providing large field of view.

PubMed

Kremer, Y; Léger, J-F; Lapole, R; Honnorat, N; Candela, Y; Dieudonné, S; Bourdieu, L

2008-07-07

Acousto-optic deflectors (AOD) are promising ultrafast scanners for non-linear microscopy. Their use has been limited until now by their small scanning range and by the spatial and temporal dispersions of the laser beam going through the deflectors. We show that the use of AOD of large aperture (13mm) compared to standard deflectors allows accessing much larger field of view while minimizing spatio-temporal distortions. An acousto-optic modulator (AOM) placed at distance of the AOD is used to compensate spatial and temporal dispersions. Fine tuning of the AOM-AOD setup using a frequency-resolved optical gating (GRENOUILLE) allows elimination of pulse front tilt whereas spatial chirp is minimized thanks to the large aperture AOD.

Note: Laser beam scanning using a ferroelectric liquid crystal spatial light modulator

NASA Astrophysics Data System (ADS)

Das, Abhijit; Boruah, Bosanta R.

2014-04-01

In this work we describe laser beam scanning using a ferroelectric liquid crystal spatial light modulator. Commercially available ferroelectric liquid crystal spatial light modulators are capable of displaying 85 colored images in 1 s using a time dithering technique. Each colored image, in fact, comprises 24 single bit (black and white) images displayed sequentially. We have used each single bit image to write a binary phase hologram. For a collimated laser beam incident on the hologram, one of the diffracted beams can be made to travel along a user defined direction. We have constructed a beam scanner employing the above arrangement and demonstrated its use to scan a single laser beam in a laser scanning optical sectioning microscope setup.

Recent Experiments Conducted with the Wide-Field Imaging Interferometry Testbed (WIIT)

NASA Technical Reports Server (NTRS)

Leisawitz, David T.; Juanola-Parramon, Roser; Bolcar, Matthew; Iacchetta, Alexander S.; Maher, Stephen F.; Rinehart, Stephen A.

2016-01-01

The Wide-field Imaging Interferometry Testbed (WIIT) was developed at NASA's Goddard Space Flight Center to demonstrate and explore the practical limitations inherent in wide field-of-view double Fourier (spatio-spectral) interferometry. The testbed delivers high-quality interferometric data and is capable of observing spatially and spectrally complex hyperspectral test scenes. Although WIIT operates at visible wavelengths, by design the data are representative of those from a space-based far-infrared observatory. We used WIIT to observe a calibrated, independently characterized test scene of modest spatial and spectral complexity, and an astronomically realistic test scene of much greater spatial and spectral complexity. This paper describes the experimental setup, summarizes the performance of the testbed, and presents representative data.

Spatially resolved, in-situ monitoring of crack growth via the coupling current in aluminum alloy 5083

NASA Astrophysics Data System (ADS)

Williams, Krystaufeux D.

The work discussed in this dissertation is an experimental validation of a body of research that was created to model stress corrosion cracking phenomenon for 304 stainless steels in boiling water reactors. This coupled environment fracture model (CEFM) incorporates the natural laws of the conservation of charge and the differential aeration hypothesis to predict the amount of stress corrosion crack growth as a function of many external environmental variables, including potential, stress intensity, solution conductivity, oxidizer concentrations, and various other environmental parameters. Out of this approach came the concept of the coupling current; a local corrosion current that flows from within cracks, crevices, pits, etc... of a metal or alloy to the external surface. Because of the deterministic approach taken in the mentioned research, the coupling current analysis and CEFM model can be applied to the specific problem of SCC in aluminum alloy 5083 (the alloy of interest for this dissertation that is highly sought after today because of its corrosion resistance and high strength to weight ratio). This dissertation research is specifically devoted to the experimental verification of the coupling current, which results from a coupling between the crack's internal and external environments, by spatially resolving them using the scanning vibrating probe (SVP) as a tool. Hence, through the use of a unique fracture mechanics setup, simultaneous mechanical and local electrochemical data may be obtained, in situ..

Optical fiber sensors-based temperature distribution measurement in ex vivo radiofrequency ablation with submillimeter resolution.

PubMed

Macchi, Edoardo Gino; Tosi, Daniele; Braschi, Giovanni; Gallati, Mario; Cigada, Alfredo; Busca, Giorgio; Lewis, Elfed

2014-01-01

Radiofrequency thermal ablation (RFTA) induces a high-temperature field in a biological tissue having steep spatial (up to 6°C∕mm) and temporal (up to 1°C∕s) gradients. Applied in cancer care, RFTA produces a localized heating, cytotoxic for tumor cells, and is able to treat tumors with sizes up to 3 to 5 cm in diameter. The online measurement of temperature distribution at the RFTA point of care has been previously carried out with miniature thermocouples and optical fiber sensors, which exhibit problems of size, alteration of RFTA pattern, hysteresis, and sensor density worse than 1 sensor∕cm. In this work, we apply a distributed temperature sensor (DTS) with a submillimeter spatial resolution for the monitoring of RFTA in porcine liver tissue. The DTS demodulates the chaotic Rayleigh backscattering pattern with an interferometric setup to obtain the real-time temperature distribution. A measurement chamber has been set up with the fiber crossing the tissue along different diameters. Several experiments have been carried out measuring the space-time evolution of temperature during RFTA. The present work showcases the temperature monitoring in RFTA with an unprecedented spatial resolution and is exportable to in vivo measurement; the acquired data can be particularly useful for the validation of RFTA computational models.

Simultaneous measurement of dynamic strain and temperature distribution using high birefringence PANDA fiber Bragg grating

NASA Astrophysics Data System (ADS)

Zhu, Mengshi; Murayama, Hideaki

2017-04-01

New approach in simultaneous measurement of dynamic strain and temperature has been done by using a high birefringence PANDA fiber Bragg grating sensor. By this technique, we have succeeded in discriminating dynamic strain and temperature distribution at the sampling rate of 800 Hz and the spatial resolution of 1 mm. The dynamic distribution of strain and temperature were measured with the deviation of 5mm spatially. In addition, we have designed an experimental setup by which we can apply quantitative dynamic strain and temperature distribution to the fiber under testing without bounding it to a specimen.

Imaging through scattering media by Fourier filtering and single-pixel detection

NASA Astrophysics Data System (ADS)

Jauregui-Sánchez, Y.; Clemente, P.; Lancis, J.; Tajahuerce, E.

2018-02-01

We present a novel imaging system that combines the principles of Fourier spatial filtering and single-pixel imaging in order to recover images of an object hidden behind a turbid medium by transillumination. We compare the performance of our single-pixel imaging setup with that of a conventional system. We conclude that the introduction of Fourier gating improves the contrast of images in both cases. Furthermore, we show that the combination of single-pixel imaging and Fourier spatial filtering techniques is particularly well adapted to provide images of objects transmitted through scattering media.

Genetic evolutionary taboo search for optimal marker placement in infrared patient setup

NASA Astrophysics Data System (ADS)

Riboldi, M.; Baroni, G.; Spadea, M. F.; Tagaste, B.; Garibaldi, C.; Cambria, R.; Orecchia, R.; Pedotti, A.

2007-09-01

In infrared patient setup adequate selection of the external fiducial configuration is required for compensating inner target displacements (target registration error, TRE). Genetic algorithms (GA) and taboo search (TS) were applied in a newly designed approach to optimal marker placement: the genetic evolutionary taboo search (GETS) algorithm. In the GETS paradigm, multiple solutions are simultaneously tested in a stochastic evolutionary scheme, where taboo-based decision making and adaptive memory guide the optimization process. The GETS algorithm was tested on a group of ten prostate patients, to be compared to standard optimization and to randomly selected configurations. The changes in the optimal marker configuration, when TRE is minimized for OARs, were specifically examined. Optimal GETS configurations ensured a 26.5% mean decrease in the TRE value, versus 19.4% for conventional quasi-Newton optimization. Common features in GETS marker configurations were highlighted in the dataset of ten patients, even when multiple runs of the stochastic algorithm were performed. Including OARs in TRE minimization did not considerably affect the spatial distribution of GETS marker configurations. In conclusion, the GETS algorithm proved to be highly effective in solving the optimal marker placement problem. Further work is needed to embed site-specific deformation models in the optimization process.

New Experimental Results of Simulating Micrometeoroid Ablation in the Laboratory

NASA Astrophysics Data System (ADS)

Sternovsky, Zoltan; Thomas, Evan; DeLuca, Michael; Janches, Diego; Munsat, Tobin; Plane, John

2017-04-01

A facility is developed to simulate the ablation of micrometeoroids in laboratory conditions, which also allows measuring the ionization probability of the ablated material. An electrostatic dust accelerator is used to generate iron, aluminum and meteoric analog particles with velocities 10-50 km/s. The particles are then introduced into a cell filled with nitrogen, air or carbon dioxide gas with pressures adjustable in the 0.02 - 0.5 Torr range, where the partial or complete ablation of the particle occurs over a short distance. An array of biased electrodes is used to collect the ionized products with spatial resolution along the ablating particles' path, allowing thus the study of the temporal resolution of the process. A new optical observation setup using a 64 channel PMT system was added to the setup to allow the observation of the ablating particle and deceleration of the particle from the neutral drag. A simple ablation model is used to match the observations. For completely ablated particles the total collected charge directly yields the ionization efficiency. The measurements using iron particles in N2 and air are in relatively good agreement with earlier data. The new experimental data using aluminum particles suggest that the neutral drag acting of the particle is smaller than expected.

Computational fluid dynamics modeling of laboratory flames and an industrial flare.

PubMed

Singh, Kanwar Devesh; Gangadharan, Preeti; Chen, Daniel H; Lou, Helen H; Li, Xianchang; Richmond, Peyton

2014-11-01

A computational fluid dynamics (CFD) methodology for simulating the combustion process has been validated with experimental results. Three different types of experimental setups were used to validate the CFD model. These setups include an industrial-scale flare setups and two lab-scale flames. The CFD study also involved three different fuels: C3H6/CH/Air/N2, C2H4/O2/Ar and CH4/Air. In the first setup, flare efficiency data from the Texas Commission on Environmental Quality (TCEQ) 2010 field tests were used to validate the CFD model. In the second setup, a McKenna burner with flat flames was simulated. Temperature and mass fractions of important species were compared with the experimental data. Finally, results of an experimental study done at Sandia National Laboratories to generate a lifted jet flame were used for the purpose of validation. The reduced 50 species mechanism, LU 1.1, the realizable k-epsilon turbulence model, and the EDC turbulence-chemistry interaction model were usedfor this work. Flare efficiency, axial profiles of temperature, and mass fractions of various intermediate species obtained in the simulation were compared with experimental data and a good agreement between the profiles was clearly observed. In particular the simulation match with the TCEQ 2010 flare tests has been significantly improved (within 5% of the data) compared to the results reported by Singh et al. in 2012. Validation of the speciated flat flame data supports the view that flares can be a primary source offormaldehyde emission.

Free Molecular Heat Transfer Programs for Setup and Dynamic Updating the Conductors in Thermal Desktop

NASA Technical Reports Server (NTRS)

Malroy, Eric T.

2007-01-01

The programs, arrays and logic structure were developed to enable the dynamic update of conductors in thermal desktop. The MatLab program FMHTPRE.m processes the Thermal Desktop conductors and sets up the arrays. The user needs to manually copy portions of the output to different input regions in Thermal Desktop. Also, Fortran subroutines are provided that perform the actual updates to the conductors. The subroutines are setup for helium gas, but the equations can be modified for other gases. The maximum number of free molecular conductors allowed is 10,000 for a given radiation task. Additional radiation tasks for FMHT can be generated to account for more conductors. Modifications to the Fortran subroutines may be warranted, when the mode of heat transfer is in the mixed or continuum mode. The FMHT Thermal Desktop model should be activated by using the "Case Set Manager" once the model is setup. Careful setup of the model is needed to avoid excessive solve times.

Flight Test Results of a Synthetic Vision Elevation Database Integrity Monitor

NASA Technical Reports Server (NTRS)

deHaag, Maarten Uijt; Sayre, Jonathon; Campbell, Jacob; Young, Steve; Gray, Robert

2001-01-01

This paper discusses the flight test results of a real-time Digital Elevation Model (DEM) integrity monitor for Civil Aviation applications. Providing pilots with Synthetic Vision (SV) displays containing terrain information has the potential to improve flight safety by improving situational awareness and thereby reducing the likelihood of Controlled Flight Into Terrain (CFIT). Utilization of DEMs, such as the digital terrain elevation data (DTED), requires a DEM integrity check and timely integrity alerts to the pilots when used for flight-critical terrain-displays, otherwise the DEM may provide hazardous misleading terrain information. The discussed integrity monitor checks the consistency between a terrain elevation profile synthesized from sensor information, and the profile given in the DEM. The synthesized profile is derived from DGPS and radar altimeter measurements. DEMs of various spatial resolutions are used to illustrate the dependency of the integrity monitor s performance on the DEMs spatial resolution. The paper will give a description of proposed integrity algorithms, the flight test setup, and the results of a flight test performed at the Ohio University airport and in the vicinity of Asheville, NC.

Performance Evaluation of 18F Radioluminescence Microscopy Using Computational Simulation

PubMed Central

Wang, Qian; Sengupta, Debanti; Kim, Tae Jin; Pratx, Guillem

2017-01-01

Purpose Radioluminescence microscopy can visualize the distribution of beta-emitting radiotracers in live single cells with high resolution. Here, we perform a computational simulation of 18F positron imaging using this modality to better understand how radioluminescence signals are formed and to assist in optimizing the experimental setup and image processing. Methods First, the transport of charged particles through the cell and scintillator and the resulting scintillation is modeled using the GEANT4 Monte-Carlo simulation. Then, the propagation of the scintillation light through the microscope is modeled by a convolution with a depth-dependent point-spread function, which models the microscope response. Finally, the physical measurement of the scintillation light using an electron-multiplying charge-coupled device (EMCCD) camera is modeled using a stochastic numerical photosensor model, which accounts for various sources of noise. The simulated output of the EMCCD camera is further processed using our ORBIT image reconstruction methodology to evaluate the endpoint images. Results The EMCCD camera model was validated against experimentally acquired images and the simulated noise, as measured by the standard deviation of a blank image, was found to be accurate within 2% of the actual detection. Furthermore, point-source simulations found that a reconstructed spatial resolution of 18.5 μm can be achieved near the scintillator. As the source is moved away from the scintillator, spatial resolution degrades at a rate of 3.5 μm per μm distance. These results agree well with the experimentally measured spatial resolution of 30–40 μm (live cells). The simulation also shows that the system sensitivity is 26.5%, which is also consistent with our previous experiments. Finally, an image of a simulated sparse set of single cells is visually similar to the measured cell image. Conclusions Our simulation methodology agrees with experimental measurements taken with radioluminescence microscopy. This in silico approach can be used to guide further instrumentation developments and to provide a framework for improving image reconstruction. PMID:28273348

Simulating wind energy resources with mesoscale models: Intercomparison of state-of-the-art models over Northern Europe

NASA Astrophysics Data System (ADS)

Hahmann, A. N.

2015-12-01

Mesoscale models are increasingly being used to estimate wind conditions to identify perspective areas and sites where to develop wind farm projects. Mesoscale models are useful because they give information over extensive areas with various terrain complexities where measurements are scarce and measurement campaigns costly. Various mesoscale models and families of mesoscale models are being used, with thousands of setup options. Since long-term integrations are expensive and tedious to carry out, only limited comparisons exist. We have carried out a blind benchmarking study to evaluate the capabilities of mesoscale models used in wind energy to estimate site wind conditions: to highlight common issues on mesoscale modeling of wind conditions on sites with different characteristics, and to identify gaps and strengths of models and understand the root conditions for further evaluating uncertainties. Three experimental sites with tall mast measurements were selected: FINO3 (offshore), Høvsøre (coastal), and Cabauw (land-based). The participants were asked to provide hourly time series of wind speed and direction, temperature, etc., at various heights for 2011. The methods used were left to the choice of the participants, but they were asked for a detailed description of their model and many other parameters (e.g., horizontal and vertical resolution, model parameterizations, surface roughness length) that could be used to group the models and interpret the results of the intercomparison. The analysis of the time series includes comparison to observations, summarized with well-known measures such as biases, RMSE, correlations, and of sector-wise statistics, and the temporal spectra. The statistics were grouped by the models, their spatial resolution, forcing data, various integration methods, etc. The results show high fidelity of the various entries in simulating the wind climate at the offshore and coastal site. Over land and the statistics of other derived fields (e.g. wind shear distributions) show much less similarities among the models and with the observations. Cloud computing now allows the use of mesoscale models by non-experts for site assessment. This tool is very useful and powerful, but users must be aware of the different issues that might be encountered in working with different setups.

Influence of the set-up on the recording of diffractive optical elements into photopolymers

NASA Astrophysics Data System (ADS)

Gallego, S.; Fernández, R.; Márquez, A.; Neipp, C.; Beléndez, A.; Pascual, I.

2014-05-01

Photopolymers are often used as a base of holographic memories displays. Recently the capacity of photopolymers to record diffractive optical elements (DOE's) has been demonstrated. To fabricate diffractive optical elements we use a hybrid setup that is composed by three different parts: LCD, optical system and the recording material. The DOE pattern is introduced by a liquid crystal display (LCD) working in the amplitude only mode to work as a master to project optically the DOE onto the recording material. The main advantage of this display is that permit us modify the DOE automatically, we use the electronics of the video projector to send the voltage to the pixels of the LCD. The LCD is used in the amplitude-mostly modulation regime by proper orientation of the external polarizers (P); then the pattern is imaged onto the material with an increased spatial frequency (a demagnifying factor of 2) by the optical system. The use of the LCD allows us to change DOE recorded in the photopolymer without moving any mechanical part of the set-up. A diaphragm is placed in the focal plane of the relay lens so as to eliminate the diffraction orders produced by the pixelation of the LCD. It can be expected that the final pattern imaged onto the recording material will be low filtered due to the finite aperture of the imaging system and especially due to the filtering process produced by the diaphragm. In this work we analyze the effect of the visibility achieved with the LCD and the high frequency cut-off due to the diaphragm in the final DOE recorded into the photopolymer. To simulate the recording we have used the fitted values parameters obtained for PVA/AA based photopolymers and the 3 dimensional models presented in previous works.

Digital holographic interferometry: a novel optical calorimetry technique for radiation dosimetry.

PubMed

Cavan, Alicia; Meyer, Juergen

2014-02-01

To develop and demonstrate the proof-of-principle of a novel optical calorimetry method to determine radiation absorbed dose in a transparent medium. The calorimetric property of water is measured during irradiation by means of an interferometer, which detects temperature-induced changes in the refractive index that can be mathematically related to absorbed dose. The proposed method uses a technique called digital holographic interferometry (DHI), which comprises an optical laser interferometer setup and consecutive physical reconstruction of the recorded wave fronts by means of the Fresnel transform. This paper describes the conceptual framework and provides the mathematical basis for DHI dosimetry. Dose distributions from a high dose rate Brachytherapy source were measured by a prototype optical setup to demonstrate the feasibility of the approach. The developed DHI dosimeter successfully determined absorbed dose distributions in water in the region adjacent to a high dose rate Brachytherapy source. A temperature change of 0.0381 K across a distance of 6.8 mm near the source was measured, corresponding to a dose of 159.3 Gy. The standard deviation in a typical measurement set was ± 3.45 Gy (corresponding to an uncertainty in the temperature value of ± 8.3 × 10(-4) K). The relative dose fall off was in agreement with treatment planning system modeled data. First results with a prototype optical setup and a Brachytherapy source demonstrate the proof-of-principle of the approach. The prototype achieves high spatial resolution of approximately 3 × 10(-4) m. The general approach is fundamentally independent of the radiation type and energy. The sensitivity range determined indicates that the method is predominantly suitable for high dose rate applications. Further work is required to determine absolute dose in all three dimensions.

Taking the CCDs to the ultimate performance for low threshold experiments

DOE Office of Scientific and Technical Information (OSTI.GOV)

Haro, Miguel; Moroni, Guillermo; Tiffenberg, Javier

2016-11-14

Scientific grade CCDs show atractive capabilities for the detection of particles with small energy deposition in matter. Their very low threshold of approximately 40 eV and their good spatial reconstruction of the event are key properties for currently running experiments: CONNIE and DAMIC. Both experiments can benefit from any increase of the detection efficiency of nuclear recoils at low energy. In this work we present two different approaches to increase this efficiency by increasing the SNR of events. The first one is based on the reduction of the readout noise of the device, which is the main contribution of uncertaintymore » to the signal measurement. New studies on the electronic noise from the integrated output amplifier and the readout electronics will be presented together with result of a new configuration showing a lower limit on the readout noise which can be implemented on the current setup of the CCD based experiments. A second approach to increase the SNR of events at low energy that will be presented is the studies of the spatial conformation of nuclear recoil events at different depth in the active volume by studies of new effects that differ from expected models based on not interacting diffusion model of electrons in the semiconductor.« less

Hotspot of accelerated sea-level rise on the Atlantic coast of North America

USGS Publications Warehouse

Sallenger,, Asbury H.; Doran, Kara S.; Howd, Peter A.

2012-01-01

Climate warming does not force sea-level rise (SLR) at the same rate everywhere. Rather, there are spatial variations of SLR superimposed on a global average rise. These variations are forced by dynamic processes, arising from circulation and variations in temperature and/or salinity, and by static equilibrium processes, arising from mass redistributions changing gravity and the Earth's rotation and shape. These sea-level variations form unique spatial patterns, yet there are very few observations verifying predicted patterns or fingerprints. Here, we present evidence of recently accelerated SLR in a unique 1,000-km-long hotspot on the highly populated North American Atlantic coast north of Cape Hatteras and show that it is consistent with a modelled fingerprint of dynamic SLR. Between 1950–1979 and 1980–2009, SLR rate increases in this northeast hotspot were ~ 3–4 times higher than the global average. Modelled dynamic plus steric SLR by 2100 at New York City ranges with Intergovernmental Panel on Climate Change scenario from 36 to 51 cm (ref. 3); lower emission scenarios project 24–36 cm (ref. 7). Extrapolations from data herein range from 20 to 29 cm. SLR superimposed on storm surge, wave run-up and set-up will increase the vulnerability of coastal cities to flooding, and beaches and wetlands to deterioration.

Pattern formation in Dictyostelium discoideum aggregates in confined microenvironments

NASA Astrophysics Data System (ADS)

Hallou, Adrien; Hersen, Pascal; di Meglio, Jean-Marc; Kabla, Alexandre

Dictyostelium Discoideum (Dd) is often viewed as a model system to study the complex collective cell behaviours which shape an embryo. Under starvation, Dd cells form multicellular aggregates which soon elongate, starting to display an anterior-posterior axis by differentiating into two distinct cell populations; prestalk (front) and prespore (rear) cells zones. Different models, either based on positional information or on differentiation followed up by cell sorting, have been proposed to explain the origin and the regulation of this spatial pattern.To decipher between the proposed hypotheses, we have developed am experimental platform where aggregates, made of genetically engineered Dd cells to express fluorescent reporters of cell differentiation in either prestalk or prespore cells, are allowed to develop in 20 to 400 μm wide hydrogel channels. Such a setup allows us to both mimic Dd confined natural soil environment and to follow the patterning dynamics using time-lapse microscopy. Tracking cell lineage commitments and positions in space and time, we demonstrate that Dd cells differentiate first into prestalk and prespore cells prior to sorting into an organized spatial pattern on the basis of collective motions based on differential motility and adhesion mechanisms. A. Hallou would like to thank the University of Cambridge for the Award of an ``Oliver Gatty Studentship in Biophysical and Colloid Science''.

Evaluation of remotely sensed actual evapotranspiration data for modeling small scale irrigation in Ethiopia.

NASA Astrophysics Data System (ADS)

Taddele, Y. D.; Ayana, E.; Worqlul, A. W.; Srinivasan, R.; Gerik, T.; Clarke, N.

2017-12-01

The research presented in this paper is conducted in Ethiopia, which is located in the horn of Africa. Ethiopian economy largely depends on rainfed agriculture, which employs 80% of the labor force. The rainfed agriculture is frequently affected by droughts and dry spells. Small scale irrigation is considered as the lifeline for the livelihoods of smallholder farmers in Ethiopia. Biophysical models are highly used to determine the agricultural production, environmental sustainability, and socio-economic outcomes of small scale irrigation in Ethiopia. However, detailed spatially explicit data is not adequately available to calibrate and validate simulations from biophysical models. The Soil and Water Assessment Tool (SWAT) model was setup using finer resolution spatial and temporal data. The actual evapotranspiration (AET) estimation from the SWAT model was compared with two remotely sensed data, namely the Advanced Very High Resolution Radiometer (AVHRR) and Moderate Resolution Imaging Spectrometer (MODIS). The performance of the monthly satellite data was evaluated with correlation coefficient (R2) over the different land use groups. The result indicated that over the long term and monthly the AVHRR AET captures the pattern of SWAT simulated AET reasonably well, especially on agricultural dominated landscapes. A comparison between SWAT simulated AET and AVHRR AET provided mixed results on grassland dominated landscapes and poor agreement on forest dominated landscapes. Results showed that the AVHRR AET products showed superior agreement with the SWAT simulated AET than MODIS AET. This suggests that remotely sensed products can be used as valuable tool in properly modeling small scale irrigation.

Modelling rapid flow response of a tile drained hillslope with explicit representation of preferential flow paths and consideration of equifinal model structures

NASA Astrophysics Data System (ADS)

Klaus, Julian; Zehe, Erwin

2010-05-01

Rapid water flow along spatially connected - often biologically mediated - flow paths of minimum flow resistance is widely acknowledged to play a key role in runoff generation at the hillslope and small catchment scales but also in the transport of solutes like agro chemicals and nutrients in cohesive soils. Especially at tile drained fields site connected vertical flow structures such as worm burrows, roots or shrinkage cracks act as short cuts allowing water flow to bypass the soil matrix. In the present study we propose a spatially explicit approach to represent worm burrows as connected structures of high conductivity and low retention capacity in a 2D physically model. With this approach tile drain discharge and preferential flow patterns in soil observed during the irrigation of a tile drained hillslope in the Weiherbach catchment were modelled. The model parameters derived from measurements and are considered to be uncertain. Given this uncertainty of key factors that organise flow and transport at tile drained sites the main objectives of the present studies are to shed light on the following three questions: 1. Does a simplified approach that explicitly represents worm burrows as continuous flow paths of small flow resistance and low retention properties in a 2D physically model allow successful reproduction of event flow response at a tile drained field site in the Weiherbach catchment? 2. Does the above described uncertainty in key factors cause equifinality i.e. are there several model structural setups that reproduce event flow response in an acceptable manner without compromising our physical understanding of the system? 3. If so, what are the key factors that have to be known at high accuracy to reduce the equifinality of model structures? The issue of equifinality is usually discussed in catchment modelling to indicate that often a large set of conceptual model parameter sets allows acceptable reproduction of the behaviour of the system of interest - in many cases catchment stream flow response. Beven and Binley (1992) suggest that these model structures should be considered to be equally likely to account for predictive uncertainty. In this study we show that the above outline approach allows successful prediction of the tile drain discharge and preferential flow patterns in soil observed during the irrigation of a tile drained hillslope in the Weiherbach catchment flow event. Strikingly we a found a considerable equifinality in the model structural setup, when key parameters such as the area density of worm burrows, their hydraulic conductivity and the conductivity of the tile drains were varied within the ranges of either our measurements or measurements reported in the literature. Thirteen different model setups yielded a normalised time-shifted Nash-Sutcliffe of more than 0.9, which means that more than 90% of the flow variability is explained by the model. Also the flow volumes were in good accordance and timing errors were less or equal than 20 min (which corresponds to two simulation output time steps). It is elaborated that this uncertainty/equifinality could be reduced when more precise data on initial states of the subsurface and on the drainage area of a single drainage tube could be made available. However, such data are currently most difficult to assess even at very well investigated site as the one that is dealt with here. We thus suggest non uniqueness of process based model structures seems thus to be an important factor causing predictive uncertainty at many sites where preferential flow dominates systems response. References Beven, K.J. and Binley, A.M., 1992. The future of distributed models: model calibration and uncertainty prediction, Hydrological Processes, 6, p.279-298.

Absolute and convective instabilities and their roles in the forecasting of large frontal meanderings

NASA Astrophysics Data System (ADS)

Liang, X. San; Robinson, Allan R.

2013-10-01

Frontal meanderings are generally difficult to predict. In this study, we demonstrate through an exercise with the Iceland-Faeroe Front (IFF) that satisfactory predictions may be achieved with the aid of hydrodynamic instability analysis. As discovered earlier on, underlying the IFF meandering is a convective instability in the western boundary region followed by an absolute instability in the interior; correspondingly the disturbance growth reveals a switch of pattern from spatial amplification to temporal amplification. To successfully forecast the meandering, the two instability processes must be faithfully reproduced. This sets stringent constraints for the tunable model parameters, e.g., boundary relaxation, temporal relaxation, eddy diffusivity, etc. By analyzing the instability dispersion properties, these parameters can be rather accurately set and their respective ranges of sensitivity estimated. It is shown that too much relaxation inhibits the front from varying; on the other hand, too little relaxation may have the model completely skip the spatial growth phase, leading to a meandering way more upstream along the front. Generally speaking, dissipation/diffusion tends to stabilize the simulation, but unrealistically large dissipation/diffusion could trigger a spurious absolute instability, and hence a premature meandering intrusion. The belief that taking in more data will improve the forecast does not need to be true; it depends on whether the model setup admits the two instabilities. This study may help relieve modelers from the laborious and tedious work of parameter tuning; it also provides us criteria to distinguish a physically relevant forecast from numerical artifacts.

High spatial resolution mapping of folds and fractures using Unmanned Aerial Vehicle (UAV) photogrammetry

NASA Astrophysics Data System (ADS)

Cruden, A. R.; Vollgger, S.

2016-12-01

The emerging capability of UAV photogrammetry combines a simple and cost-effective method to acquire digital aerial images with advanced computer vision algorithms that compute spatial datasets from a sequence of overlapping digital photographs from various viewpoints. Depending on flight altitude and camera setup, sub-centimeter spatial resolution orthophotographs and textured dense point clouds can be achieved. Orientation data can be collected for detailed structural analysis by digitally mapping such high-resolution spatial datasets in a fraction of time and with higher fidelity compared to traditional mapping techniques. Here we describe a photogrammetric workflow applied to a structural study of folds and fractures within alternating layers of sandstone and mudstone at a coastal outcrop in SE Australia. We surveyed this location using a downward looking digital camera mounted on commercially available multi-rotor UAV that autonomously followed waypoints at a set altitude and speed to ensure sufficient image overlap, minimum motion blur and an appropriate resolution. The use of surveyed ground control points allowed us to produce a geo-referenced 3D point cloud and an orthophotograph from hundreds of digital images at a spatial resolution < 10 mm per pixel, and cm-scale location accuracy. Orientation data of brittle and ductile structures were semi-automatically extracted from these high-resolution datasets using open-source software. This resulted in an extensive and statistically relevant orientation dataset that was used to 1) interpret the progressive development of folds and faults in the region, and 2) to generate a 3D structural model that underlines the complex internal structure of the outcrop and quantifies spatial variations in fold geometries. Overall, our work highlights how UAV photogrammetry can contribute to new insights in structural analysis.

Modeling and Model Identification of Autonomous Underwater Vehicles

DTIC Science & Technology

2015-06-01

setup, based on a quadrifilar pendulum , is developed to measure the moments of inertia of the vehicle. System identification techniques, based on...parametric models of the platforms: an individual channel excitation approach and a free decay pendulum test. The former is applied to THAUS, which can...excite the system in individual channels in four degrees of freedom. These results are verified in the free decay pendulum setup, which has the

Evaluation of the fidelity of feature descriptor-based specimen tracking for automatic NDE data integration

NASA Astrophysics Data System (ADS)

Radkowski, Rafael; Holland, Stephen; Grandin, Robert

2018-04-01

This research addresses inspection location tracking in the field of nondestructive evaluation (NDE) using a computer vision technique to determine the position and orientation of typical NDE equipment in a test setup. The objective is the tracking accuracy for typical NDE equipment to facilitate automatic NDE data integration. Since the employed tracking technique relies on surface curvatures of an object of interest, the accuracy can be only experimentally determined. We work with flash-thermography and conducted an experiment in which we tracked a specimen and a thermography flash hood, measured the spatial relation between both, and used the relation as input to map thermography data onto a 3D model of the specimen. The results indicate an appropriate accuracy, however, unveiled calibration challenges.

MO-FG-CAMPUS-TeP1-04: Pseudo-In-Vivo Dose Verification of a New Mono-Isocentric Technique for the Treatment of Multiple Brain Metastases

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pappas, E P; Makris, D; Lahanas, V

2016-06-15

Purpose: To validate dose calculation and delivery accuracy of a recently introduced mono-isocentric technique for the treatment of multiple brain metastases in a realistic clinical case. Methods: Anonymized CT scans of a patient were used to model a hollow phantom that duplicates anatomy of the skull. A 3D printer was used to construct the phantom of a radiologically bone-equivalent material. The hollow phantom was subsequently filled with a polymer gel 3D dosimeter which also acted as a water-equivalent material. Irradiation plan consisted of 5 targets and was identical to the one delivered to the specific patient except for the prescriptionmore » dose which was optimized to match the gel dose-response characteristics. Dose delivery was performed using a single setup isocenter dynamic conformal arcs technique. Gel dose read-out was carried out by a 1.5 T MRI scanner. All steps of the corresponding patient’s treatment protocol were strictly followed providing an end-to-end quality assurance test. Pseudo-in-vivo measured 3D dose distribution and calculated one were compared in terms of spatial agreement, dose profiles, 3D gamma indices (5%/2mm, 20% dose threshold), DVHs and DVH metrics. Results: MR-identified polymerized areas and calculated high dose regions were found to agree within 1.5 mm for all targets, taking into account all sources of spatial uncertainties involved (i.e., set-up errors, MR-related geometric distortions and registration inaccuracies). Good dosimetric agreement was observed in the vast majority of the examined profiles. 3D gamma index passing rate reached 91%. DVH and corresponding metrics comparison resulted in a satisfying agreement between measured and calculated datasets within targets and selected organs-at-risk. Conclusion: A novel, pseudo-in-vivo QA test was implemented to validate spatial and dosimetric accuracy in treatment of multiple metastases. End-to-end testing demonstrated that our gel dosimetry phantom is suited for such QA procedures, allowing for 3D analysis of both targeting placement and dose.« less

Spatial frequency domain imaging using a snap-shot filter mosaic camera with multi-wavelength sensitive pixels

NASA Astrophysics Data System (ADS)

Strömberg, Tomas; Saager, Rolf B.; Kennedy, Gordon T.; Fredriksson, Ingemar; Salerud, Göran; Durkin, Anthony J.; Larsson, Marcus

2018-02-01

Spatial frequency domain imaging (SFDI) utilizes a digital light processing (DLP) projector for illuminating turbid media with sinusoidal patterns. The tissue absorption (μa) and reduced scattering coefficient (μ,s) are calculated by analyzing the modulation transfer function for at least two spatial frequencies. We evaluated different illumination strategies with a red, green and blue light emitting diodes (LED) in the DLP, while imaging with a filter mosaic camera, XiSpec, with 16 different multi-wavelength sensitive pixels in the 470-630 nm wavelength range. Data were compared to SFDI by a multispectral camera setup (MSI) consisting of four cameras with bandpass filters centered at 475, 560, 580 and 650 nm. A pointwise system for comprehensive microcirculation analysis was used (EPOS) for comparison. A 5-min arterial occlusion and release protocol on the forearm of a Caucasian male with fair skin was analyzed by fitting the absorption spectra of the chromophores HbO2, Hb and melanin to the estimatedμa. The tissue fractions of red blood cells (fRBC), melanin (/mel) and the Hb oxygenation (S02 ) were calculated at baseline, end of occlusion, early after release and late after release. EPOS results showed a decrease in S02 during the occlusion and hyperemia during release (S02 = 40%, 5%, 80% and 51%). The fRBC showed an increase during occlusion and release phases. The best MSI resemblance to the EPOS was for green LED illumination (S02 = 53%, 9%, 82%, 65%). Several illumination and analysis strategies using the XiSpec gave un-physiological results (e.g. negative S02 ). XiSpec with green LED illumination gave the expected change in /RBC , while the dynamics in S02 were less than those for EPOS. These results may be explained by the calculation of modulation using an illumination and detector setup with a broad spectral transmission bandwidth, with considerable variation in μa of included chromophores. Approaches for either reducing the effective bandwidth of the XiSpec filters or by including their characteristic in a light transport model for SFDI modulation, are proposed.

Ghost imaging of phase objects with classical incoherent light

DOE Office of Scientific and Technical Information (OSTI.GOV)

Shirai, Tomohiro; Setaelae, Tero; Friberg, Ari T.

2011-10-15

We describe an optical setup for performing spatial Fourier filtering in ghost imaging with classical incoherent light. This is achieved by a modification of the conventional geometry for lensless ghost imaging. It is shown on the basis of classical coherence theory that with this technique one can realize what we call phase-contrast ghost imaging to visualize pure phase objects.

Development of Adaptive Tilt Tracker that Utilizes QUAD-cell Detector to Track Extended Objects

DTIC Science & Technology

2014-03-17

telescopes. When incident light encounters the atmosphere , it experiences a turbulent medium that distorts optical wavefronts. Without the AO...fluctuations which randomize optical path lengths. Figure 2 - The temporal and spatial aspects of atmospheric turbulence [6] Consider...the PTS are determined by atmospheric turbulence , optical set-up, and object characteristics such as size, shape, motion, and intensity

On the Use of FOSS4G in Land Cover Fraction Estimation with Unmixing Algorithms

NASA Astrophysics Data System (ADS)

Kumar, U.; Milesi, C.; Raja, K.; Ganguly, S.; Wang, W.; Zhang, G.; Nemani, R. R.

2014-12-01

The popularity and usage of FOSS4G (FOSS for Geoinformatics) has increased drastically in the last two decades with increasing benefits that facilitate spatial data analysis, image processing, graphics and map production, spatial modeling and visualization. The objective of this paper is to use FOSS4G to implement and perform a quantitative analysis of three different unmixing algorithms: Constraint Least-Square (CLS), Unconstraint Least-Square, and Orthogonal Subspace Projection to estimate land cover (LC) fraction estimates from RS data. The LC fractions obtained by unmixing of mixed pixels represent mixture of more than one class per pixel rendering more accurate LC abundance estimates. The algorithms were implemented in C++ programming language with OpenCV package (http://opencv.org/) and boost C++ libraries (www.boost.org) in the NASA Earth Exchange at the NASA Advanced Supercomputing Facility. GRASS GIS was used for visualization of results and statistical analysis was carried in R in a Linux system environment. A set of global endmembers for substrate, vegetation and dark objects were used to unmix the data using the three algorithms and were compared with Singular Value decomposition unmixed outputs available in ENVI image processing software. First, computer simulated data of different signal to noise ratio were used to evaluate the algorithms. The second set of experiments was carried out in an agricultural set-up with a spectrally diverse collection of 11 Landsat-5 scenes (acquired in 2008) for an agricultural setup in Frenso, California and the ground data were collected on those specific dates when the satellite passed through the site. Finally, in the third set of experiments, a pair of coincident clear sky Landsat and World View 2 data for an urbanized area of San Francisco were used to assess the algorithm. Validation of the results using descriptive statistics, correlation coefficient (cc), RMSE, boxplot and bivariate distribution function indicated that with the computer simulated data, CLS was better than other techniques. With the real world data of an agricultural landscape, CLS was superior to other techniques with a mean absolute error for all four methods close to 7.3%. For the urban setup, CLS demonstrated highest average cc of 0.64 and lowest average RMSE of 0.19 for all the endmembers.

CALIFA, the Calar Alto Legacy Integral Field Area survey. II. First public data release

NASA Astrophysics Data System (ADS)

Husemann, B.; Jahnke, K.; Sánchez, S. F.; Barrado, D.; Bekeraitė, S.; Bomans, D. J.; Castillo-Morales, A.; Catalán-Torrecilla, C.; Cid Fernandes, R.; Falcón-Barroso, J.; García-Benito, R.; González Delgado, R. M.; Iglesias-Páramo, J.; Johnson, B. D.; Kupko, D.; López-Fernandez, R.; Lyubenova, M.; Marino, R. A.; Mast, D.; Miskolczi, A.; Monreal-Ibero, A.; Gil de Paz, A.; Pérez, E.; Pérez, I.; Rosales-Ortega, F. F.; Ruiz-Lara, T.; Schilling, U.; van de Ven, G.; Walcher, J.; Alves, J.; de Amorim, A. L.; Backsmann, N.; Barrera-Ballesteros, J. K.; Bland-Hawthorn, J.; Cortijo, C.; Dettmar, R.-J.; Demleitner, M.; Díaz, A. I.; Enke, H.; Florido, E.; Flores, H.; Galbany, L.; Gallazzi, A.; García-Lorenzo, B.; Gomes, J. M.; Gruel, N.; Haines, T.; Holmes, L.; Jungwiert, B.; Kalinova, V.; Kehrig, C.; Kennicutt, R. C.; Klar, J.; Lehnert, M. D.; López-Sánchez, Á. R.; de Lorenzo-Cáceres, A.; Mármol-Queraltó, E.; Márquez, I.; Mendez-Abreu, J.; Mollá, M.; del Olmo, A.; Meidt, S. E.; Papaderos, P.; Puschnig, J.; Quirrenbach, A.; Roth, M. M.; Sánchez-Blázquez, P.; Spekkens, K.; Singh, R.; Stanishev, V.; Trager, S. C.; Vilchez, J. M.; Wild, V.; Wisotzki, L.; Zibetti, S.; Ziegler, B.

2013-01-01

We present the first public data release (DR1) of the Calar Alto Legacy Integral Field Area (CALIFA) survey. It consists of science-grade optical datacubes for the first 100 of eventually 600 nearby (0.005 < z < 0.03) galaxies, obtained with the integral-field spectrograph PMAS/PPak mounted on the 3.5 m telescope at the Calar Alto observatory. The galaxies in DR1 already cover a wide range of properties in color-magnitude space, morphological type, stellar mass, and gas ionization conditions. This offers the potential to tackle a variety of open questions in galaxy evolution using spatially resolved spectroscopy. Two different spectral setups are available for each galaxy, (i) a low-resolution V500 setup covering the nominal wavelength range 3745-7500 Å with a spectral resolution of 6.0 Å (FWHM), and (ii) a medium-resolution V1200 setup covering the nominal wavelength range 3650-4840 Å with a spectral resolution of 2.3 Å (FWHM). We present the characteristics and data structure of the CALIFA datasets that should be taken into account for scientific exploitation of the data, in particular the effects of vignetting, bad pixels and spatially correlated noise. The data quality test for all 100 galaxies showed that we reach a median limiting continuum sensitivity of 1.0 × 10-18 erg s-1 cm-2 Å-1 arcsec-2 at 5635 Å and 2.2 × 10-18 erg s-1 cm-2 Å-1 arcsec-2 at 4500 Å for the V500 and V1200 setup respectively, which corresponds to limiting r and g band surface brightnesses of 23.6 mag arcsec-2 and 23.4 mag arcsec-2, or an unresolved emission-line flux detection limit of roughly 1 × 10-17 erg s-1 cm-2 arcsec-2 and 0.6 × 10-17 erg s-1 cm-2 arcsec-2, respectively. The median spatial resolution is 3farcs7, and the absolute spectrophotometric calibration is better than 15% (1σ). We also describe the available interfaces and tools that allow easy access to this first publicCALIFA data at http://califa.caha.es/DR1 Based on observations collected at the Centro Astronómico Hispano Alemán (CAHA) at Calar Alto, operated jointly by the Max- Planck-Institut für Astronomie (MPIA) and the Instituto de Astrofísica de Andalucía (CSIC).

Non-Invasive Measurement of Frog Skin Reflectivity in High Spatial Resolution Using a Dual Hyperspectral Approach

PubMed Central

Liebisch, Frank; Walter, Achim; Greven, Hartmut; Rascher, Uwe

2013-01-01

Background Most spectral data for the amphibian integument are limited to the visible spectrum of light and have been collected using point measurements with low spatial resolution. In the present study a dual camera setup consisting of two push broom hyperspectral imaging systems was employed, which produces reflectance images between 400 and 2500 nm with high spectral and spatial resolution and a high dynamic range. Methodology/Principal Findings We briefly introduce the system and document the high efficiency of this technique analyzing exemplarily the spectral reflectivity of the integument of three arboreal anuran species (Litoria caerulea, Agalychnis callidryas and Hyla arborea), all of which appear green to the human eye. The imaging setup generates a high number of spectral bands within seconds and allows non-invasive characterization of spectral characteristics with relatively high working distance. Despite the comparatively uniform coloration, spectral reflectivity between 700 and 1100 nm differed markedly among the species. In contrast to H. arborea, L. caerulea and A. callidryas showed reflection in this range. For all three species, reflectivity above 1100 nm is primarily defined by water absorption. Furthermore, the high resolution allowed examining even small structures such as fingers and toes, which in A. callidryas showed an increased reflectivity in the near infrared part of the spectrum. Conclusion/Significance Hyperspectral imaging was found to be a very useful alternative technique combining the spectral resolution of spectrometric measurements with a higher spatial resolution. In addition, we used Digital Infrared/Red-Edge Photography as new simple method to roughly determine the near infrared reflectivity of frog specimens in field, where hyperspectral imaging is typically difficult. PMID:24058464

Coupling LaGrit unstructured mesh generation and model setup with TOUGH2 flow and transport: A case study

DOE PAGES

Sentis, Manuel Lorenzo; Gable, Carl W.

2017-06-15

Furthermore, there are many applications in science and engineering modeling where an accurate representation of a complex model geometry in the form of a mesh is important. In applications of flow and transport in subsurface porous media, this is manifest in models that must capture complex geologic stratigraphy, structure (faults, folds, erosion, deposition) and infrastructure (tunnels, boreholes, excavations). Model setup, defined as the activities of geometry definition, mesh generation (creation, optimization, modification, refine, de-refine, smooth), assigning material properties, initial conditions and boundary conditions requires specialized software tools to automate and streamline the process. In addition, some model setup tools willmore » provide more utility if they are designed to interface with and meet the needs of a particular flow and transport software suite. A control volume discretization that uses a two point flux approximation is for example most accurate when the underlying control volumes are 2D or 3D Voronoi tessellations. In this paper we will present the coupling of LaGriT, a mesh generation and model setup software suite and TOUGH2 to model subsurface flow problems and we show an example of how LaGriT can be used as a model setup tool for the generation of a Voronoi mesh for the simulation program TOUGH2. To generate the MESH file for TOUGH2 from the LaGriT output a standalone module Lagrit2Tough2 was developed, which is presented here and will be included in a future release of LaGriT. Here in this paper an alternative method to generate a Voronoi mesh for TOUGH2 with LaGriT is presented and thanks to the modular and command based structure of LaGriT this method is well suited to generating a mesh for complex models.« less

Coupling LaGrit unstructured mesh generation and model setup with TOUGH2 flow and transport: A case study

NASA Astrophysics Data System (ADS)

Sentís, Manuel Lorenzo; Gable, Carl W.

2017-11-01

There are many applications in science and engineering modeling where an accurate representation of a complex model geometry in the form of a mesh is important. In applications of flow and transport in subsurface porous media, this is manifest in models that must capture complex geologic stratigraphy, structure (faults, folds, erosion, deposition) and infrastructure (tunnels, boreholes, excavations). Model setup, defined as the activities of geometry definition, mesh generation (creation, optimization, modification, refine, de-refine, smooth), assigning material properties, initial conditions and boundary conditions requires specialized software tools to automate and streamline the process. In addition, some model setup tools will provide more utility if they are designed to interface with and meet the needs of a particular flow and transport software suite. A control volume discretization that uses a two point flux approximation is for example most accurate when the underlying control volumes are 2D or 3D Voronoi tessellations. In this paper we will present the coupling of LaGriT, a mesh generation and model setup software suite and TOUGH2 (Pruess et al., 1999) to model subsurface flow problems and we show an example of how LaGriT can be used as a model setup tool for the generation of a Voronoi mesh for the simulation program TOUGH2. To generate the MESH file for TOUGH2 from the LaGriT output a standalone module Lagrit2Tough2 was developed, which is presented here and will be included in a future release of LaGriT. In this paper an alternative method to generate a Voronoi mesh for TOUGH2 with LaGriT is presented and thanks to the modular and command based structure of LaGriT this method is well suited to generating a mesh for complex models.

Cavity-Enhanced Raman Spectroscopy for Food Chain Management

PubMed Central

Sandfort, Vincenz; Goldschmidt, Jens; Wöllenstein, Jürgen

2018-01-01

Comprehensive food chain management requires the monitoring of many parameters including temperature, humidity, and multiple gases. The latter is highly challenging because no low-cost technology for the simultaneous chemical analysis of multiple gaseous components currently exists. This contribution proposes the use of cavity enhanced Raman spectroscopy to enable online monitoring of all relevant components using a single laser source. A laboratory scale setup is presented and characterized in detail. Power enhancement of the pump light is achieved in an optical resonator with a Finesse exceeding 2500. A simulation for the light scattering behavior shows the influence of polarization on the spatial distribution of the Raman scattered light. The setup is also used to measure three relevant showcase gases to demonstrate the feasibility of the approach, including carbon dioxide, oxygen and ethene. PMID:29495501

DOE Office of Scientific and Technical Information (OSTI.GOV)

Buzzi, M.; Vaz, C. A. F.; Raabe, J.

Manipulating magnetisation by the application of an electric field in magnetoelectric multiferroics represents a timely issue due to the potential applications in low power electronics and the novel physics involved. Thanks to its element sensitivity and high spatial resolution, X-ray photoemission electron microscopy is a uniquely suited technique for the investigation of magnetoelectric coupling in multiferroic materials. In this work, we present a setup that allows for the application of in situ electric and magnetic fields while the sample is analysed in the microscope. As an example of the performances of the setup, we present measurements on Ni/Pb(Mg{sub 0.66}Nb{sub 0.33})O{submore » 3}-PbTiO{sub 3} and La{sub 0.7}Sr{sub 0.3}MnO{sub 3}/PMN-PT artificial multiferroic nanostructures.« less

Hyperspectral imaging spectro radiometer improves radiometric accuracy

NASA Astrophysics Data System (ADS)

Prel, Florent; Moreau, Louis; Bouchard, Robert; Bullis, Ritchie D.; Roy, Claude; Vallières, Christian; Levesque, Luc

2013-06-01

Reliable and accurate infrared characterization is necessary to measure the specific spectral signatures of aircrafts and associated infrared counter-measures protections (i.e. flares). Infrared characterization is essential to improve counter measures efficiency, improve friend-foe identification and reduce the risk of friendly fire. Typical infrared characterization measurement setups include a variety of panchromatic cameras and spectroradiometers. Each instrument brings essential information; cameras measure the spatial distribution of targets and spectroradiometers provide the spectral distribution of the emitted energy. However, the combination of separate instruments brings out possible radiometric errors and uncertainties that can be reduced with Hyperspectral imagers. These instruments combine both spectral and spatial information into the same data. These instruments measure both the spectral and spatial distribution of the energy at the same time ensuring the temporal and spatial cohesion of collected information. This paper presents a quantitative analysis of the main contributors of radiometric uncertainties and shows how a hyperspectral imager can reduce these uncertainties.

Real-time 2D spatially selective MRI experiments: Comparative analysis of optimal control design methods.

PubMed

Maximov, Ivan I; Vinding, Mads S; Tse, Desmond H Y; Nielsen, Niels Chr; Shah, N Jon

2015-05-01

There is an increasing need for development of advanced radio-frequency (RF) pulse techniques in modern magnetic resonance imaging (MRI) systems driven by recent advancements in ultra-high magnetic field systems, new parallel transmit/receive coil designs, and accessible powerful computational facilities. 2D spatially selective RF pulses are an example of advanced pulses that have many applications of clinical relevance, e.g., reduced field of view imaging, and MR spectroscopy. The 2D spatially selective RF pulses are mostly generated and optimised with numerical methods that can handle vast controls and multiple constraints. With this study we aim at demonstrating that numerical, optimal control (OC) algorithms are efficient for the design of 2D spatially selective MRI experiments, when robustness towards e.g. field inhomogeneity is in focus. We have chosen three popular OC algorithms; two which are gradient-based, concurrent methods using first- and second-order derivatives, respectively; and a third that belongs to the sequential, monotonically convergent family. We used two experimental models: a water phantom, and an in vivo human head. Taking into consideration the challenging experimental setup, our analysis suggests the use of the sequential, monotonic approach and the second-order gradient-based approach as computational speed, experimental robustness, and image quality is key. All algorithms used in this work were implemented in the MATLAB environment and are freely available to the MRI community. Copyright © 2015 Elsevier Inc. All rights reserved.

Strategy for long-term 3D cloud-resolving simulations over the ARM SGP site and preliminary results

NASA Astrophysics Data System (ADS)

Lin, W.; Liu, Y.; Song, H.; Endo, S.

2011-12-01

Parametric representations of cloud/precipitation processes continue having to be adopted in climate simulations with increasingly higher spatial resolution or with emerging adaptive mesh framework; and it is only becoming more critical that such parameterizations have to be scale aware. Continuous cloud measurements at DOE's ARM sites have provided a strong observational basis for novel cloud parameterization research at various scales. Despite significant progress in our observational ability, there are important cloud-scale physical and dynamical quantities that are either not currently observable or insufficiently sampled. To complement the long-term ARM measurements, we have explored an optimal strategy to carry out long-term 3-D cloud-resolving simulations over the ARM SGP site using Weather Research and Forecasting (WRF) model with multi-domain nesting. The factors that are considered to have important influences on the simulated cloud fields include domain size, spatial resolution, model top, forcing data set, model physics and the growth of model errors. The hydrometeor advection that may play a significant role in hydrological process within the observational domain but is often lacking, and the limitations due to the constraint of domain-wide uniform forcing in conventional cloud system-resolving model simulations, are at least partly accounted for in our approach. Conventional and probabilistic verification approaches are employed first for selected cases to optimize the model's capability of faithfully reproducing the observed mean and statistical distributions of cloud-scale quantities. This then forms the basis of our setup for long-term cloud-resolving simulations over the ARM SGP site. The model results will facilitate parameterization research, as well as understanding and dissecting parameterization deficiencies in climate models.

TURBULENT TRANSPORT IN A STRONGLY STRATIFIED FORCED SHEAR LAYER WITH THERMAL DIFFUSION

DOE Office of Scientific and Technical Information (OSTI.GOV)

Garaud, Pascale

2016-04-10

This work presents numerical results on the transport of heat and chemical species by shear-induced turbulence in strongly stratified, thermally diffusive environments. The shear instabilities driven in this regime are sometimes called “secular” shear instabilities, and can take place when the Richardson number of the flow is large, provided the Péclet number is small. We have identified a set of simple criteria to determine whether these instabilities can take place or not. Generally speaking, we find that they may be relevant whenever the thermal diffusivity of the fluid is very large (typically larger than 10{sup 14} cm{sup 2} s{sup −1}),more » which is the case in the outer layers of high-mass stars (M ≥ 10 M{sub ⊙}), for instance. Using a simple model setup in which the shear is forced by a spatially sinusoidal, constant-amplitude body-force, we have identified several regimes ranging from effectively unstratified to very strongly stratified, each with its own set of dynamical properties. Unless the system is in one of the two extreme regimes (effectively unstratified or completely stable), however, we find that (1) only about 10% of the input power is used toward heat transport, while the remaining 90% is viscously dissipated; (2) that the effective compositional mixing coefficient is well-approximated by the model of Zahn, with D ≃ 0.02κ{sub T}/J where κ{sub T} is the thermal diffusivity and J is the Richardson number. These results need to be confirmed, however, with simulations in different model setups and at higher effective Reynolds number.« less

The performance of cleaner wrasse, Labroides dimidiatus, in a reversal learning task varies across experimental paradigms.

PubMed

Gingins, Simon; Marcadier, Fanny; Wismer, Sharon; Krattinger, Océane; Quattrini, Fausto; Bshary, Redouan; Binning, Sandra A

2018-01-01

Testing performance in controlled laboratory experiments is a powerful tool for understanding the extent and evolution of cognitive abilities in non-human animals. However, cognitive testing is prone to a number of potential biases, which, if unnoticed or unaccounted for, may affect the conclusions drawn. We examined whether slight modifications to the experimental procedure and apparatus used in a spatial task and reversal learning task affected performance outcomes in the bluestreak cleaner wrasse, Labroides dimidiatus (hereafter "cleaners"). Using two-alternative forced-choice tests, fish had to learn to associate a food reward with a side (left or right) in their holding aquarium. Individuals were tested in one of four experimental treatments that differed slightly in procedure and/or physical set-up. Cleaners from all four treatment groups were equally able to solve the initial spatial task. However, groups differed in their ability to solve the reversal learning task: no individuals solved the reversal task when tested in small tanks with a transparent partition separating the two options, whereas over 50% of individuals solved the task when performed in a larger tank, or with an opaque partition. These results clearly show that seemingly insignificant details to the experimental set-up matter when testing performance in a spatial task and might significantly influence the outcome of experiments. These results echo previous calls for researchers to exercise caution when designing methodologies for cognition tasks to avoid misinterpretations.

Single Machine Scheduling and Due Date Assignment with Past-Sequence-Dependent Setup Time and Position-Dependent Processing Time

PubMed Central

Zhao, Chuan-Li; Hsu, Hua-Feng

2014-01-01

This paper considers single machine scheduling and due date assignment with setup time. The setup time is proportional to the length of the already processed jobs; that is, the setup time is past-sequence-dependent (p-s-d). It is assumed that a job's processing time depends on its position in a sequence. The objective functions include total earliness, the weighted number of tardy jobs, and the cost of due date assignment. We analyze these problems with two different due date assignment methods. We first consider the model with job-dependent position effects. For each case, by converting the problem to a series of assignment problems, we proved that the problems can be solved in O(n 4) time. For the model with job-independent position effects, we proved that the problems can be solved in O(n 3) time by providing a dynamic programming algorithm. PMID:25258727

Single machine scheduling and due date assignment with past-sequence-dependent setup time and position-dependent processing time.

PubMed

Zhao, Chuan-Li; Hsu, Chou-Jung; Hsu, Hua-Feng

2014-01-01

This paper considers single machine scheduling and due date assignment with setup time. The setup time is proportional to the length of the already processed jobs; that is, the setup time is past-sequence-dependent (p-s-d). It is assumed that a job's processing time depends on its position in a sequence. The objective functions include total earliness, the weighted number of tardy jobs, and the cost of due date assignment. We analyze these problems with two different due date assignment methods. We first consider the model with job-dependent position effects. For each case, by converting the problem to a series of assignment problems, we proved that the problems can be solved in O(n(4)) time. For the model with job-independent position effects, we proved that the problems can be solved in O(n(3)) time by providing a dynamic programming algorithm.

Sensory and cognitive neurophysiology in rats, Part 1: Controlled tactile stimulation and micro-ECoG recordings in freely moving animals.

PubMed

Dimitriadis, George; Fransen, Anne M M; Maris, Eric

2014-07-30

We have developed a setup for rats that allows for controlled sensory input to an animal engaged in a task while recording both electrophysiological signals and behavioral output. We record electrophysiological signals using a novel high-density micro-electrocorticography (micro-ECoG) grid that covers almost the whole somatosensory system. We dealt with the well-known difficulty that the rat uses its whisker system in an active (motor-controlled) way to explore its environment by designing a head-mounted device that stimulates the rat's snout in a way unaffected by whisker movements. We replicate the spatial specificity of early evoked responses in somatosensory and auditory cortex. In a companion paper (Cognitive Neurophysiology in Rats, Part 2: Validation and Demonstration) we validate our setup and show for the first time that the ECoG can be used to record evoked responses in a signal that reflects neural output (spiking activity). Compared with high-density wire recordings, micro-ECoG offers a much more stable signal without readjustments, and a much better scalability. Compared with head-fixed preparations, our head-mounted stimulator allows to stay closer to the rat's natural way of collecting sensory information. For perceptual and cognitive research, our setup provides a unique combination of possibilities that cannot be achieved in other setups for rodents. Copyright © 2014 Elsevier B.V. All rights reserved.

Spatially-controlled illumination with rescan confocal microscopy enhances image quality, resolution and reduces photodamage

NASA Astrophysics Data System (ADS)

Krishnaswami, Venkataraman; De Luca, Giulia M. R.; Breedijk, Ronald M. P.; Van Noorden, Cornelis J. F.; Manders, Erik M. M.; Hoebe, Ron A.

2017-02-01

Fluorescence microscopy is an important tool in biomedical imaging. An inherent trade-off lies between image quality and photodamage. Recently, we have introduced rescan confocal microscopy (RCM) that improves the lateral resolution of a confocal microscope down to 170 nm. Previously, we have demonstrated that with controlled-light exposure microscopy, spatial control of illumination reduces photodamage without compromising image quality. Here, we show that the combination of these two techniques leads to high resolution imaging with reduced photodamage without compromising image quality. Implementation of spatially-controlled illumination was carried out in RCM using a line scanning-based approach. Illumination is spatially-controlled for every line during imaging with the help of a prediction algorithm that estimates the spatial profile of the fluorescent specimen. The estimation is based on the information available from previously acquired line images. As a proof-of-principle, we show images of N1E-115 neuroblastoma cells, obtained by this new setup with reduced illumination dose, improved resolution and without compromising image quality.

Theory of a Quantum Scanning Microscope for Cold Atoms

NASA Astrophysics Data System (ADS)

Yang, D.; Laflamme, C.; Vasilyev, D. V.; Baranov, M. A.; Zoller, P.

2018-03-01

We propose and analyze a scanning microscope to monitor "live" the quantum dynamics of cold atoms in a cavity QED setup. The microscope measures the atomic density with subwavelength resolution via dispersive couplings to a cavity and homodyne detection within the framework of continuous measurement theory. We analyze two modes of operation. First, for a fixed focal point the microscope records the wave packet dynamics of atoms with time resolution set by the cavity lifetime. Second, a spatial scan of the microscope acts to map out the spatial density of stationary quantum states. Remarkably, in the latter case, for a good cavity limit, the microscope becomes an effective quantum nondemolition device, such that the spatial distribution of motional eigenstates can be measured backaction free in single scans, as an emergent quantum nondemolition measurement.

Theory of a Quantum Scanning Microscope for Cold Atoms.

PubMed

Yang, D; Laflamme, C; Vasilyev, D V; Baranov, M A; Zoller, P

2018-03-30

We propose and analyze a scanning microscope to monitor "live" the quantum dynamics of cold atoms in a cavity QED setup. The microscope measures the atomic density with subwavelength resolution via dispersive couplings to a cavity and homodyne detection within the framework of continuous measurement theory. We analyze two modes of operation. First, for a fixed focal point the microscope records the wave packet dynamics of atoms with time resolution set by the cavity lifetime. Second, a spatial scan of the microscope acts to map out the spatial density of stationary quantum states. Remarkably, in the latter case, for a good cavity limit, the microscope becomes an effective quantum nondemolition device, such that the spatial distribution of motional eigenstates can be measured backaction free in single scans, as an emergent quantum nondemolition measurement.

Industrial implementation of spatial variability control by real-time SPC

NASA Astrophysics Data System (ADS)

Roule, O.; Pasqualini, F.; Borde, M.

2016-10-01

Advanced technology nodes require more and more information to get the wafer process well setup. The critical dimension of components decreases following Moore's law. At the same time, the intra-wafer dispersion linked to the spatial non-uniformity of tool's processes is not capable to decrease in the same proportions. APC systems (Advanced Process Control) are being developed in waferfab to automatically adjust and tune wafer processing, based on a lot of process context information. It can generate and monitor complex intrawafer process profile corrections between different process steps. It leads us to put under control the spatial variability, in real time by our SPC system (Statistical Process Control). This paper will outline the architecture of an integrated process control system for shape monitoring in 3D, implemented in waferfab.

Assessing the impacts of climate change in Mediterranean catchments under conditions of data scarcity

NASA Astrophysics Data System (ADS)

Meyer, Swen; Ludwig, Ralf

2013-04-01

According to current climate projections, Mediterranean countries are at high risk for an even pronounced susceptibility to changes in the hydrological budget and extremes. While there is scientific consensus that climate induced changes on the hydrology of Mediterranean regions are presently occurring and are projected to amplify in the future, very little knowledge is available about the quantification of these changes, which is hampered by a lack of suitable and cost effective hydrological monitoring and modeling systems. The European FP7-project CLIMB is aiming to analyze climate induced changes on the hydrology of the Mediterranean Basins by investigating 7 test sites located in the countries Italy, France, Turkey, Tunisia, Gaza and Egypt. CLIMB employs a combination of novel geophysical field monitoring concepts, remote sensing techniques and integrated hydrologic modeling to improve process descriptions and understanding and to quantify existing uncertainties in climate change impact analysis. The Rio Mannu Basin, located in Sardinia; Italy, is one test site of the CLIMB project. The catchment has a size of 472.5 km2, it ranges from 62 to 946 meters in elevation, at mean annual temperatures of 16°C and precipitation of about 700 mm, the annual runoff volume is about 200 mm. The physically based Water Simulation Model WaSiM Vers. 2 (Schulla & Jasper (1999)) was setup to model current and projected future hydrological conditions. The availability of measured meteorological and hydrological data is poor as common to many Mediterranean catchments. The lack of available measured input data hampers the calibration of the model setup and the validation of model outputs. State of the art remote sensing techniques and field measuring techniques were applied to improve the quality of hydrological input parameters. In a field campaign about 250 soil samples were collected and lab-analyzed. Different geostatistical regionalization methods were tested to improve the model setup. The soil parameterization of the model was tested against publically available soil data. Results show a significant improvement of modeled soil moisture outputs. To validate WaSiMs evapotranspiration (ETact) outputs, Landsat TM images were used to calculate the actual monthly mean ETact rates using the triangle method (Jiang and Islam, 1999). Simulated spatial ETact patterns and those derived from remote sensing show a good fit especially for the growing season. WaSiM was driven with the meteorological forcing taken from 4 different ENSEMBLES climate projections for a reference (1971-2000) and a future (2041-2070) times series. Output results were analyzed for climate induced changes on selected hydrological variables. While the climate projections reveal increased precipitation rates in the spring season, first simulation results show an earlier onset and an increased duration of the dry season, imposing an increased irrigation demand and higher vulnerability of agricultural productivity.

Estimating evaporation with thermal UAV data and two-source energy balance models

NASA Astrophysics Data System (ADS)

Hoffmann, H.; Nieto, H.; Jensen, R.; Guzinski, R.; Zarco-Tejada, P.; Friborg, T.

2016-02-01

Estimating evaporation is important when managing water resources and cultivating crops. Evaporation can be estimated using land surface heat flux models and remotely sensed land surface temperatures (LST), which have recently become obtainable in very high resolution using lightweight thermal cameras and Unmanned Aerial Vehicles (UAVs). In this study a thermal camera was mounted on a UAV and applied into the field of heat fluxes and hydrology by concatenating thermal images into mosaics of LST and using these as input for the two-source energy balance (TSEB) modelling scheme. Thermal images are obtained with a fixed-wing UAV overflying a barley field in western Denmark during the growing season of 2014 and a spatial resolution of 0.20 m is obtained in final LST mosaics. Two models are used: the original TSEB model (TSEB-PT) and a dual-temperature-difference (DTD) model. In contrast to the TSEB-PT model, the DTD model accounts for the bias that is likely present in remotely sensed LST. TSEB-PT and DTD have already been well tested, however only during sunny weather conditions and with satellite images serving as thermal input. The aim of this study is to assess whether a lightweight thermal camera mounted on a UAV is able to provide data of sufficient quality to constitute as model input and thus attain accurate and high spatial and temporal resolution surface energy heat fluxes, with special focus on latent heat flux (evaporation). Furthermore, this study evaluates the performance of the TSEB scheme during cloudy and overcast weather conditions, which is feasible due to the low data retrieval altitude (due to low UAV flying altitude) compared to satellite thermal data that are only available during clear-sky conditions. TSEB-PT and DTD fluxes are compared and validated against eddy covariance measurements and the comparison shows that both TSEB-PT and DTD simulations are in good agreement with eddy covariance measurements, with DTD obtaining the best results. The DTD model provides results comparable to studies estimating evaporation with similar experimental setups, but with LST retrieved from satellites instead of a UAV. Further, systematic irrigation patterns on the barley field provide confidence in the veracity of the spatially distributed evaporation revealed by model output maps. Lastly, this study outlines and discusses the thermal UAV image processing that results in mosaics suited for model input. This study shows that the UAV platform and the lightweight thermal camera provide high spatial and temporal resolution data valid for model input and for other potential applications requiring high-resolution and consistent LST.

Using Spatial Correlations of SPDC Sources for Increasing the Signal to Noise Ratio in Images

NASA Astrophysics Data System (ADS)

Ruíz, A. I.; Caudillo, R.; Velázquez, V. M.; Barrios, E.

2017-05-01

We experimentally show that, by using spatial correlations of photon pairs produced by Spontaneous Parametric Down-Conversion, it is possible to increase the Signal to Noise Ratio in images of objects illuminated with those photons; in comparison, objects illuminated with light from a laser present a minor ratio. Our simple experimental set-up was capable to produce an average improvement in signal to noise ratio of 11dB of Parametric Down-Converted light over laser light. This simple method can be easily implemented for obtaining high contrast images of faint objects and for transmitting information with low noise.

Measurement of gamma quantum interaction point in plastic scintillator with WLS strips

NASA Astrophysics Data System (ADS)

Smyrski, J.; Alfs, D.; Bednarski, T.; Białas, P.; Czerwiński, E.; Dulski, K.; Gajos, A.; Głowacz, B.; Gupta-Sharma, N.; Gorgol, M.; Jasińska, B.; Kajetanowicz, M.; Kamińska, D.; Korcyl, G.; Kowalski, P.; Krzemień, W.; Krawczyk, N.; Kubicz, E.; Mohammed, M.; Niedźwiecki, Sz.; Pawlik-Niedźwiecka, M.; Raczyński, L.; Rudy, Z.; Salabura, P.; Silarski, M.; Strzelecki, A.; Wieczorek, A.; Wiślicki, W.; Wojnarska, J.; Zgardzińska, B.; Zieliński, M.; Moskal, P.

2017-04-01

The feasibility of measuring the aśxial coordinate of a gamma quantum interaction point in a plastic scintillator bar via the detection of scintillation photons escaping from the scintillator with an array of wavelength-shifting (WLS) strips is demonstrated. Using a test set-up comprising a BC-420 scintillator bar and an array of sixteen BC-482A WLS strips we achieved a spatial resolution of 5 mm (σ) for annihilation photons from a 22Na isotope. The studied method can be used to improve the spatial resolution of a plastic-scintillator-based PET scanner which is being developed by the J-PET collaboration.

Statistical Downscaling Of Local Climate In The Alpine Region

NASA Astrophysics Data System (ADS)

Kaspar, Severin; Philipp, Andreas; Jacobeit, Jucundus

2016-04-01

The impact of climate change on the alpine region was disproportional strong in the past decades compared to the surrounding areas, which becomes manifest in a higher increase in surface air temperature. Beside the thermal changes also implications for the hydrological cycle may be expected, acting as a very important factor not only for the ecosystem but also for mankind, in the form of water security or considering economical aspects like winter tourism etc. Therefore, in climate impact studies, it is necessary to focus on variables with high influence on the hydrological cycle, for example temperature, precipitation, wind, humidity and radiation. The aim of this study is to build statistical downscaling models which are able to reproduce temperature and precipitation at the mountainous alpine weather stations Zugspitze and Sonnblick and to further project these models into the future to identify possible changes in the behavior of these climate variables and with that in the hydrological cycle. Beside facing a in general very complex terrain in this high elevated regions, we have the advantage of a more direct atmospheric influence on the meteorology of the exposed weather stations from the large scale circulation. Two nonlinear statistical methods are developed to model the station-data series on a daily basis: On the one hand a conditional classification approach was used and on the other hand a model based on artificial neural networks (ANNs) was built. The latter is in focus of this presentation. One of the important steps of developing a new model approach is to find a reliable predictor setup with e.g. informative predictor variables or adequate location and size of the spatial domain. The question is: Can we include synoptic background knowledge to identify an optimal domain for an ANN approach? The yet developed ANN setups and configurations show promising results in downscaling both, temperature (up to 80 % of explained variance) and precipitation (up to 60 % of explained variance).

Integrated trimodal SSEP experimental setup for visual, auditory and tactile stimulation

NASA Astrophysics Data System (ADS)

Kuś, Rafał; Spustek, Tomasz; Zieleniewska, Magdalena; Duszyk, Anna; Rogowski, Piotr; Suffczyński, Piotr

2017-12-01

Objective. Steady-state evoked potentials (SSEPs), the brain responses to repetitive stimulation, are commonly used in both clinical practice and scientific research. Particular brain mechanisms underlying SSEPs in different modalities (i.e. visual, auditory and tactile) are very complex and still not completely understood. Each response has distinct resonant frequencies and exhibits a particular brain topography. Moreover, the topography can be frequency-dependent, as in case of auditory potentials. However, to study each modality separately and also to investigate multisensory interactions through multimodal experiments, a proper experimental setup appears to be of critical importance. The aim of this study was to design and evaluate a novel SSEP experimental setup providing a repetitive stimulation in three different modalities (visual, tactile and auditory) with a precise control of stimuli parameters. Results from a pilot study with a stimulation in a particular modality and in two modalities simultaneously prove the feasibility of the device to study SSEP phenomenon. Approach. We developed a setup of three separate stimulators that allows for a precise generation of repetitive stimuli. Besides sequential stimulation in a particular modality, parallel stimulation in up to three different modalities can be delivered. Stimulus in each modality is characterized by a stimulation frequency and a waveform (sine or square wave). We also present a novel methodology for the analysis of SSEPs. Main results. Apart from constructing the experimental setup, we conducted a pilot study with both sequential and simultaneous stimulation paradigms. EEG signals recorded during this study were analyzed with advanced methodology based on spatial filtering and adaptive approximation, followed by statistical evaluation. Significance. We developed a novel experimental setup for performing SSEP experiments. In this sense our study continues the ongoing research in this field. On the other hand, the described setup along with the presented methodology is a considerable improvement and an extension of methods constituting the state-of-the-art in the related field. Device flexibility both with developed analysis methodology can lead to further development of diagnostic methods and provide deeper insight into information processing in the human brain.

Establishing Information Security Systems via Optical Imaging

DTIC Science & Technology

2015-08-11

SLM, spatial light modulator; BSC, non - polarizing beam splitter cube; CCD, charge-coupled device. In computational ghost imaging, a series of...Laser Object Computer Fig. 5. A schematic setup for the proposed method using holography: BSC, Beam splitter cube; CCD, Charge-coupled device. The...interference between reference and object beams . (a) (e) (d) (c) (b) Distribution Code A: Approved for public release, distribution is unlimited

Time-to-space mapping of femtosecond pulses.

PubMed

Nuss, M C; Li, M; Chiu, T H; Weiner, A M; Partovi, A

1994-05-01

We report time-to-space mapping of femtosecond light pulses in a temporal holography setup. By reading out a temporal hologram of a short optical pulse with a continuous-wave diode laser, we accurately convert temporal pulse-shape information into a spatial pattern that can be viewed with a camera. We demonstrate real-time acquisition of electric-field autocorrelation and cross correlation of femtosecond pulses with this technique.

Entropy of space-time outcome in a movement speed-accuracy task.

PubMed

Hsieh, Tsung-Yu; Pacheco, Matheus Maia; Newell, Karl M

2015-12-01

The experiment reported was set-up to investigate the space-time entropy of movement outcome as a function of a range of spatial (10, 20 and 30 cm) and temporal (250-2500 ms) criteria in a discrete aiming task. The variability and information entropy of the movement spatial and temporal errors considered separately increased and decreased on the respective dimension as a function of an increment of movement velocity. However, the joint space-time entropy was lowest when the relative contribution of spatial and temporal task criteria was comparable (i.e., mid-range of space-time constraints), and it increased with a greater trade-off between spatial or temporal task demands, revealing a U-shaped function across space-time task criteria. The traditional speed-accuracy functions of spatial error and temporal error considered independently mapped to this joint space-time U-shaped entropy function. The trade-off in movement tasks with joint space-time criteria is between spatial error and timing error, rather than movement speed and accuracy. Copyright © 2015 Elsevier B.V. All rights reserved.

Verification and implementation of set-up empirical models in pile design : research project capsule.

DOT National Transportation Integrated Search

2016-08-01

The primary objectives of this research include: performing static and dynamic load tests on : newly instrumented test piles to better understand the set-up mechanism for individual soil : layers, verifying or recalibrating previously developed empir...

The range of attraction for light traps catching Culicoides biting midges (Diptera: Ceratopogonidae)

PubMed Central

2013-01-01

Background Culicoides are vectors of e.g. bluetongue virus and Schmallenberg virus in northern Europe. Light trapping is an important tool for detecting the presence and quantifying the abundance of vectors in the field. Until now, few studies have investigated the range of attraction of light traps. Methods Here we test a previously described mathematical model (Model I) and two novel models for the attraction of vectors to light traps (Model II and III). In Model I, Culicoides fly to the nearest trap from within a fixed range of attraction. In Model II Culicoides fly towards areas with greater light intensity, and in Model III Culicoides evaluate light sources in the field of view and fly towards the strongest. Model II and III incorporated the directionally dependent light field created around light traps with fluorescent light tubes. All three models were fitted to light trap collections obtained from two novel experimental setups in the field where traps were placed in different configurations. Results Results showed that overlapping ranges of attraction of neighboring traps extended the shared range of attraction. Model I did not fit data from any of the experimental setups. Model II could only fit data from one of the setups, while Model III fitted data from both experimental setups. Conclusions The model with the best fit, Model III, indicates that Culicoides continuously evaluate the light source direction and intensity. The maximum range of attraction of a single 4W CDC light trap was estimated to be approximately 15.25 meters. The attraction towards light traps is different from the attraction to host animals and thus light trap catches may not represent the vector species and numbers attracted to hosts. PMID:23497628

The range of attraction for light traps catching Culicoides biting midges (Diptera: Ceratopogonidae).

PubMed

Kirkeby, Carsten; Græsbøll, Kaare; Stockmarr, Anders; Christiansen, Lasse E; Bødker, René

2013-03-15

Culicoides are vectors of e.g. bluetongue virus and Schmallenberg virus in northern Europe. Light trapping is an important tool for detecting the presence and quantifying the abundance of vectors in the field. Until now, few studies have investigated the range of attraction of light traps. Here we test a previously described mathematical model (Model I) and two novel models for the attraction of vectors to light traps (Model II and III). In Model I, Culicoides fly to the nearest trap from within a fixed range of attraction. In Model II Culicoides fly towards areas with greater light intensity, and in Model III Culicoides evaluate light sources in the field of view and fly towards the strongest. Model II and III incorporated the directionally dependent light field created around light traps with fluorescent light tubes. All three models were fitted to light trap collections obtained from two novel experimental setups in the field where traps were placed in different configurations. Results showed that overlapping ranges of attraction of neighboring traps extended the shared range of attraction. Model I did not fit data from any of the experimental setups. Model II could only fit data from one of the setups, while Model III fitted data from both experimental setups. The model with the best fit, Model III, indicates that Culicoides continuously evaluate the light source direction and intensity. The maximum range of attraction of a single 4W CDC light trap was estimated to be approximately 15.25 meters. The attraction towards light traps is different from the attraction to host animals and thus light trap catches may not represent the vector species and numbers attracted to hosts.

Modeling the spatial and temporal population dynamics of the copepod Centropages typicus in the northwestern Mediterranean Sea during the year 2001 using a 3D ecosystem model

NASA Astrophysics Data System (ADS)

Carlotti, F.; Eisenhauer, L.; Campbell, R.; Diaz, F.

2014-07-01

The spatio-temporal dynamics of a simulated Centropages typicus (Kröyer) population during the year 2001 at the regional scale of the northwestern Mediterranean Sea are addressed using a 3D coupled physical-biogeochemical model. The setup of the coupled biological model comprises a pelagic plankton ecosystem model and a stage-structured population model forced by the 3D velocity and temperature fields provided by an eddy-resolving regional circulation model. The population model for C. typicus (C. t. below) represents demographic processes through five groups of developmental stages, which depend on underlying individual growth and development processes and are forced by both biotic (prey and predator fields) and abiotic (temperature, advection) factors from the coupled physical-biogeochemical model. The objective is to characterize C. t. ontogenic habitats driven by physical and trophic processes. The annual dynamics are presented for two of the main oceanographic stations in the Gulf of Lions, which are representative of shelf and open sea conditions, while the spatial distributions over the whole area are presented for three dates during the year, in early and late spring and in winter. The simulated spatial patterns of C. t. developmental stages are closely related to mesoscale hydrodynamic features and circulation patterns. The seasonal and spatial distributions on the Gulf of Lions shelf depend on the seasonal interplay between the Rhône river plume, the mesoscale eddies on the shelf and the Northern Current acting as either as a dynamic barrier between the shelf and the open sea or allowing cross-shelf exchanges. In the central gyre of the northwestern Mediterranean Sea, the patchiness of plankton is tightly linked to mesoscale frontal systems, surface eddies and filaments and deep gradients. Due to its flexibility in terms of its diet, C. t. succeeds in maintaining its population in both coastal and offshore areas year round. The simulations suggest that the winte-spring food conditions are more favorable on the shelf for C. t., whereas in late summer and fall, the offshore depth-integrated food biomasses represent a larger resource for C. t., particularly when mesoscale structures and vertical discontinuities increase food patchiness. The development and reproduction of C. t. depend on the prey field within the mesoscale structures that induce a contrasting spatial distribution of successive developmental stages on a given observation date. In late fall and winter, the results of the model suggest the existence of three refuge areas where the population maintains winter generations near the coast and within the Rhone River plume, or offshore within canyons within the shelf break, or in the frontal system related to the Northern Current. The simulated spatial and temporal distributions as well as the life cycle and physiological features of C. t. are discussed in light of recent reviews on the dynamics of C. t. in the northwestern Mediterranean Sea.

Numerical modelling of physical processes in a ballistic laboratory setup with a tapered adapter and plastic piston used for obtaining high muzzle velocities

NASA Astrophysics Data System (ADS)

Bykov, N. V.

2014-12-01

Numerical modelling of a ballistic setup with a tapered adapter and plastic piston is considered. The processes in the firing chamber are described within the framework of quasi- one-dimensional gas dynamics and a geometrical law of propellant burn by means of Lagrangian mass coordinates. The deformable piston is considered to be an ideal liquid with specific equations of state. The numerical solution is obtained by means of a modified explicit von Neumann scheme. The calculation results given show that the ballistic setup with a tapered adapter and plastic piston produces increased shell muzzle velocities by a factor of more than 1.5-2.

New education system for construction of optical holography setup - Tangible learning with Augmented Reality

NASA Astrophysics Data System (ADS)

Yamaguchi, Takeshi; Yoshikawa, Hiroshi

2013-02-01

In case of teaching optical system construction, it is difficult to prepare the optical components for the attendance student. However the tangible learning is very important to master the optical system construction. It helps learners understand easily to use an inexpensive learning system that provides optical experiments experiences. Therefore, we propose the new education system for construction of optical setup with the augmented reality. To use the augmented reality, the proposed system can simulate the optical system construction by the direct hand control. Also, this system only requires an inexpensive web camera, printed makers and a personal computer. Since this system does not require the darkroom and the expensive optical equipments, the learners can study anytime, anywhere when they want to do. In this paper, we developed the system that can teach the optical system construction of the Denisyuk hologram and 2-step transmission type hologram. For the tangible learning and the easy understanding, the proposed system displays the CG objects of the optical components on the markers which are controlled by the learner's hands. The proposed system does not only display the CG object, but also display the light beam which is controlled by the optical components. To display the light beam that is hard to be seen directly, the learners can confirm about what is happening by the own manipulation. For the construction of optical holography setup, we arrange a laser, mirrors, a PBS (polarizing beam splitter), lenses, a polarizer, half-wave plates, spatial filters, an optical power meter and a recording plate. After the construction, proposed system can check optical setup correctly. In comparison with the learners who only read a book, the learners who use the system can construct the optical holography setup more quickly and correctly.

Large scale modelling of catastrophic floods in Italy

NASA Astrophysics Data System (ADS)

Azemar, Frédéric; Nicótina, Ludovico; Sassi, Maximiliano; Savina, Maurizio; Hilberts, Arno

2017-04-01

The RMS European Flood HD model® is a suite of country scale flood catastrophe models covering 13 countries throughout continental Europe and the UK. The models are developed with the goal of supporting risk assessment analyses for the insurance industry. Within this framework RMS is developing a hydrologic and inundation model for Italy. The model aims at reproducing the hydrologic and hydraulic properties across the domain through a modeling chain. A semi-distributed hydrologic model that allows capturing the spatial variability of the runoff formation processes is coupled with a one-dimensional river routing algorithm and a two-dimensional (depth averaged) inundation model. This model setup allows capturing the flood risk from both pluvial (overland flow) and fluvial flooding. Here we describe the calibration and validation methodologies for this modelling suite applied to the Italian river basins. The variability that characterizes the domain (in terms of meteorology, topography and hydrologic regimes) requires a modeling approach able to represent a broad range of meteo-hydrologic regimes. The calibration of the rainfall-runoff and river routing models is performed by means of a genetic algorithm that identifies the set of best performing parameters within the search space over the last 50 years. We first establish the quality of the calibration parameters on the full hydrologic balance and on individual discharge peaks by comparing extreme statistics to observations over the calibration period on several stations. The model is then used to analyze the major floods in the country; we discuss the different meteorological setup leading to the historical events and the physical mechanisms that induced these floods. We can thus assess the performance of RMS' hydrological model in view of the physical mechanisms leading to flood and highlight the main controls on flood risk modelling throughout the country. The model's ability to accurately simulate antecedent conditions and discharge hydrographs over the affected area is also assessed, showing that spatio-temporal correlation is retained through the modelling chain. Results show that our modelling approach can capture a wide range of conditions leading to major floods in the Italian peninsula. Under the umbrella of the RMS European Flood HD models this constitutes, to our knowledge, the only operational flood risk model to be applied at continental scale with a coherent model methodology and a domain wide MonteCarlo stochastic set.

Adaptive reduction of constitutive model-form error using a posteriori error estimation techniques

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bishop, Joseph E.; Brown, Judith Alice

In engineering practice, models are typically kept as simple as possible for ease of setup and use, computational efficiency, maintenance, and overall reduced complexity to achieve robustness. In solid mechanics, a simple and efficient constitutive model may be favored over one that is more predictive, but is difficult to parameterize, is computationally expensive, or is simply not available within a simulation tool. In order to quantify the modeling error due to the choice of a relatively simple and less predictive constitutive model, we adopt the use of a posteriori model-form error-estimation techniques. Based on local error indicators in the energymore » norm, an algorithm is developed for reducing the modeling error by spatially adapting the material parameters in the simpler constitutive model. The resulting material parameters are not material properties per se, but depend on the given boundary-value problem. As a first step to the more general nonlinear case, we focus here on linear elasticity in which the “complex” constitutive model is general anisotropic elasticity and the chosen simpler model is isotropic elasticity. As a result, the algorithm for adaptive error reduction is demonstrated using two examples: (1) A transversely-isotropic plate with hole subjected to tension, and (2) a transversely-isotropic tube with two side holes subjected to torsion.« less

Adaptive reduction of constitutive model-form error using a posteriori error estimation techniques

DOE PAGES

Bishop, Joseph E.; Brown, Judith Alice

2018-06-15

In engineering practice, models are typically kept as simple as possible for ease of setup and use, computational efficiency, maintenance, and overall reduced complexity to achieve robustness. In solid mechanics, a simple and efficient constitutive model may be favored over one that is more predictive, but is difficult to parameterize, is computationally expensive, or is simply not available within a simulation tool. In order to quantify the modeling error due to the choice of a relatively simple and less predictive constitutive model, we adopt the use of a posteriori model-form error-estimation techniques. Based on local error indicators in the energymore » norm, an algorithm is developed for reducing the modeling error by spatially adapting the material parameters in the simpler constitutive model. The resulting material parameters are not material properties per se, but depend on the given boundary-value problem. As a first step to the more general nonlinear case, we focus here on linear elasticity in which the “complex” constitutive model is general anisotropic elasticity and the chosen simpler model is isotropic elasticity. As a result, the algorithm for adaptive error reduction is demonstrated using two examples: (1) A transversely-isotropic plate with hole subjected to tension, and (2) a transversely-isotropic tube with two side holes subjected to torsion.« less

Temperature profiles measurements in turbulent Rayleigh-Bénard convection by optical fibre system at the Barrel of II-menau

NASA Astrophysics Data System (ADS)

Drahotský, Jakub; Hanzelka, Pavel; Musilová, Věra; Macek, Michal; du Puits, Ronald; Urban, Pavel

2018-06-01

Modelling of large-scale natural (thermally-generated) turbulent flows (such as the turbulent convection in Earth's atmosphere, oceans, or Sun) is approached in laboratory experiments in the simplified model system called the Rayleigh-Bénard convection (RBC). We present preliminary measurements of vertical temperature profiles in the cell with the height of 4:7 m, 7:15m in diameter, obtained at the Barrel of Ilmenau (BOI), the worldwide largest experimental setup to study highly turbulent RBC, newly equipped with the Luna ODiSI-B optical fibre system. In our configuration, the system permits to measure the temperature with a high spatial resolution of 5mm along a very thin glass optical fibre with the length of 5m and seems to be perfectly suited for measurement of time series of instantaneous vertical temperature profiles. The system was supplemented with the two Pt100 vertically movable probes specially designed by us for reference temperature profiles measurements.

Thermal infrared spectrometer MERTIS for the BepiColumbo Mission to Mercury

NASA Astrophysics Data System (ADS)

Zeh, T.; Kaiser, S.; Lenfert, K.; Peter, G.; Walter, I.; Hirsch, H.; Knollenberg, J.; Helbert, J.; Multhaup, K.; Hiesinger, H.; Gebhardt, A.; Risse, S.; Damm, C.; Eberhardt, R.; Baier, V.; Kessler, E.

2017-11-01

The MERTIS instrument is a thermal infrared imaging spectrometer onboard of ESA's cornerstone mission BepiColombo to Mercury. MERTIS will provide detailed information about the mineralogical composition of Mercury's surface layer by measuring the spectral emittance in the spectral range from 7-14 μm with a high spatial and spectral resolution. Furthermore MERTIS will obtain radiometric measurements in the spectral range from 7-40 μm to study the thermo-physical properties of the surface material. Under the lead of the German Aerospace Center DLR (Dep. Optical Information Systems, Berlin) a development model (DM) is in development which integrates all MERTIS sub-units of later flight models. With the DM the general design and performance goals of the system shall be investigated and verified. Besides a general overview about the instrument principles the following topics are addressed: Optics setup with a Three Mirror Anastigmatic (TMA) telescope and Offner Spectrometer, Manufacturing techniques for the robust and high precision optics and Radiometer Concept and Design

Tempo-spatially resolved scattering correlation spectroscopy under dark-field illumination and its application to investigate dynamic behaviors of gold nanoparticles in live cells.

PubMed

Liu, Heng; Dong, Chaoqing; Ren, Jicun

2014-02-19

In this study, a new tempo-spatially resolved fluctuation spectroscopy under dark-field illumination is described, named dark-field illumination-based scattering correlation spectroscopy (DFSCS). DFSCS is a single-particle method, whose principle is similar to that of fluorescence correlation spectroscopy (FCS). DFSCS correlates the fluctuations of the scattered light from single nanoparticle under dark-field illumination. We developed a theoretical model for translational diffusion of nanoparticles in DFSCS system. The results of computer simulations documented that this model was able to well describe the diffusion behaviors of nanoparticles in uniformly illuminated field. The experimental setup of DFSCS was achieved by introducing a dark-field condenser to the frequently used bright-field microscope and an electron multiplying charge-coupled device (EMCCD) as the array detector. In the optimal condition, a stack of 500 000 frames were collected simultaneously on 64 detection channels for a single measurement with acquisition rate of 0.5 ms per frame. We systematically investigated the effect of certain factors such as particle concentration, viscosity of the solution, and heterogeneity of gold nanoparticles (GNPs) samples on DFSCS measurements. The experiment data confirmed theoretical model proposed. Furthermore, this new method was successfully used for investigating dynamic behaviors of GNPs in live cells. Our preliminary results demonstrate that DFSCS is a practical and affordable tool for ordinary laboratories to investigate the dynamic information of nanoparticles in vitro as well as in vivo.

Optical tweezers with 2.5 kHz bandwidth video detection for single-colloid electrophoresis

NASA Astrophysics Data System (ADS)

Otto, Oliver; Gutsche, Christof; Kremer, Friedrich; Keyser, Ulrich F.

2008-02-01

We developed an optical tweezers setup to study the electrophoretic motion of colloids in an external electric field. The setup is based on standard components for illumination and video detection. Our video based optical tracking of the colloid motion has a time resolution of 0.2ms, resulting in a bandwidth of 2.5kHz. This enables calibration of the optical tweezers by Brownian motion without applying a quadrant photodetector. We demonstrate that our system has a spatial resolution of 0.5nm and a force sensitivity of 20fN using a Fourier algorithm to detect periodic oscillations of the trapped colloid caused by an external ac field. The electrophoretic mobility and zeta potential of a single colloid can be extracted in aqueous solution avoiding screening effects common for usual bulk measurements.

A laboratory 8 keV transmission full-field x-ray microscope with a polycapillary as condenser for bright and dark field imaging

DOE Office of Scientific and Technical Information (OSTI.GOV)

Baumbach, S., E-mail: baumbach@rheinahrcampus.de; Wilhein, T.; Kanngießer, B.

2015-08-15

This article introduces a laboratory setup of a transmission full-field x-ray microscope at 8 keV photon energy. The microscope operates in bright and dark field imaging mode with a maximum field of view of 50 μm. Since the illumination geometry determines whether the sample is illuminated homogeneously and moreover, if different imaging methods can be applied, the condenser optic is one of the most significant parts. With a new type of x-ray condenser, a polycapillary optic, we realized bright field imaging and for the first time dark field imaging at 8 keV photon energy in a laboratory setup. A detectormore » limited spatial resolution of 210 nm is measured on x-ray images of Siemens star test patterns.« less

A laboratory 8 keV transmission full-field x-ray microscope with a polycapillary as condenser for bright and dark field imaging.

PubMed

Baumbach, S; Kanngießer, B; Malzer, W; Stiel, H; Wilhein, T

2015-08-01

This article introduces a laboratory setup of a transmission full-field x-ray microscope at 8 keV photon energy. The microscope operates in bright and dark field imaging mode with a maximum field of view of 50 μm. Since the illumination geometry determines whether the sample is illuminated homogeneously and moreover, if different imaging methods can be applied, the condenser optic is one of the most significant parts. With a new type of x-ray condenser, a polycapillary optic, we realized bright field imaging and for the first time dark field imaging at 8 keV photon energy in a laboratory setup. A detector limited spatial resolution of 210 nm is measured on x-ray images of Siemens star test patterns.

Characterization of a neutron imaging setup at the INES facility

NASA Astrophysics Data System (ADS)

Durisi, E. A.; Visca, L.; Albertin, F.; Brancaccio, R.; Corsi, J.; Dughera, G.; Ferrarese, W.; Giovagnoli, A.; Grassi, N.; Grazzi, F.; Lo Giudice, A.; Mila, G.; Nervo, M.; Pastrone, N.; Prino, F.; Ramello, L.; Re, A.; Romero, A.; Sacchi, R.; Salvemini, F.; Scherillo, A.; Staiano, A.

2013-10-01

The Italian Neutron Experimental Station (INES) located at the ISIS pulsed neutron source (Didcot, United Kingdom) provides a thermal neutron beam mainly used for diffraction analysis. A neutron transmission imaging system was also developed for beam monitoring and for aligning the sample under investigation. Although the time-of-flight neutron diffraction is a consolidated technique, the neutron imaging setup is not yet completely characterized and optimized. In this paper the performance for neutron radiography and tomography at INES of two scintillator screens read out by two different commercial CCD cameras is compared in terms of linearity, signal-to-noise ratio, effective dynamic range and spatial resolution. In addition, the results of neutron radiographies and a tomography of metal alloy test structures are presented to better characterize the INES imaging capabilities of metal artifacts in the cultural heritage field.

Feedback control of an interacting Bose-Einstein condensate using phase-contrast imaging

NASA Astrophysics Data System (ADS)

Szigeti, S. S.; Hush, M. R.; Carvalho, A. R. R.; Hope, J. J.

2010-10-01

The linewidth of an atom laser is limited by density fluctuations in the Bose-Einstein condensate (BEC) from which the atom laser beam is outcoupled. In this paper we show that a stable spatial mode for an interacting BEC can be generated using a realistic control scheme that includes the effects of the measurement backaction. This model extends the feedback theory, based on a phase-contrast imaging setup, presented by Szigeti, Hush, Carvalho, and Hope [Phys. Rev. APLRAAN1050-294710.1103/PhysRevA.80.013614 80, 013614 (2009)]. In particular, it is applicable to a BEC with large interatomic interactions and solves the problem of inadequacy of the mean-field (coherent state) approximation by utilizing a fixed number state approximation. Our numerical analysis shows the control to be more effective for a condensate with a large nonlinearity.

Feedback control of an interacting Bose-Einstein condensate using phase-contrast imaging

DOE Office of Scientific and Technical Information (OSTI.GOV)

Szigeti, S. S.; Hush, M. R.; Carvalho, A. R. R.

2010-10-15

The linewidth of an atom laser is limited by density fluctuations in the Bose-Einstein condensate (BEC) from which the atom laser beam is outcoupled. In this paper we show that a stable spatial mode for an interacting BEC can be generated using a realistic control scheme that includes the effects of the measurement backaction. This model extends the feedback theory, based on a phase-contrast imaging setup, presented by Szigeti, Hush, Carvalho, and Hope [Phys. Rev. A 80, 013614 (2009)]. In particular, it is applicable to a BEC with large interatomic interactions and solves the problem of inadequacy of the mean-fieldmore » (coherent state) approximation by utilizing a fixed number state approximation. Our numerical analysis shows the control to be more effective for a condensate with a large nonlinearity.« less

Innovative methods in soil phosphorus research: A review

PubMed Central

Kruse, Jens; Abraham, Marion; Amelung, Wulf; Baum, Christel; Bol, Roland; Kühn, Oliver; Lewandowski, Hans; Niederberger, Jörg; Oelmann, Yvonne; Rüger, Christopher; Santner, Jakob; Siebers, Meike; Siebers, Nina; Spohn, Marie; Vestergren, Johan; Vogts, Angela; Leinweber, Peter

2015-01-01

Phosphorus (P) is an indispensable element for all life on Earth and, during the past decade, concerns about the future of its global supply have stimulated much research on soil P and method development. This review provides an overview of advanced state-of-the-art methods currently used in soil P research. These involve bulk and spatially resolved spectroscopic and spectrometric P speciation methods (1 and 2D NMR, IR, Raman, Q-TOF MS/MS, high resolution-MS, NanoSIMS, XRF, XPS, (µ)XAS) as well as methods for assessing soil P reactions (sorption isotherms, quantum-chemical modeling, microbial biomass P, enzymes activity, DGT, 33P isotopic exchange, 18O isotope ratios). Required experimental set-ups and the potentials and limitations of individual methods present a guide for the selection of most suitable methods or combinations. PMID:26167132

Strong Spatial Influence on Colonization Rates in a Pioneer Zooplankton Metacommunity

PubMed Central

Frisch, Dagmar; Cottenie, Karl; Badosa, Anna; Green, Andy J.

2012-01-01

The magnitude of community-wide dispersal is central to metacommunity models, yet dispersal is notoriously difficult to quantify in passive and cryptic dispersers such as many freshwater invertebrates. By overcoming the problem of quantifying dispersal rates, colonization rates into new habitats can provide a useful estimate of the magnitude of effective dispersal. Here we study the influence of spatial and local processes on colonization rates into new ponds that indicate differential dispersal limitation of major zooplankton taxa, with important implications for metacommunity dynamics. We identify regional and local factors that affect zooplankton colonization rates and spatial patterns in a large-scale experimental system. Our study differs from others in the unique setup of the experimental pond area by which we were able to test spatial and environmental variables at a large spatial scale. We quantified colonization rates separately for the Copepoda, Cladocera and Rotifera from samples collected over a period of 21 months in 48 newly constructed temporary ponds of 0.18–2.95 ha distributed in a restored wetland area of 2,700 ha in Doñana National Park, Southern Spain. Species richness upon initial sampling of new ponds was about one third of that in reference ponds, although the rate of detection of new species from thereon were not significantly different, probably owing to high turnover in the dynamic, temporary reference ponds. Environmental heterogeneity had no detectable effect on colonization rates in new ponds. In contrast, connectivity, space (based on latitude and longitude) and surface area were key determinants of colonization rates for copepods and cladocerans. This suggests dispersal limitation in cladocerans and copepods, but not in rotifers, possibly due to differences in propagule size and abundance. PMID:22792241

Strong spatial influence on colonization rates in a pioneer zooplankton metacommunity.

PubMed

Frisch, Dagmar; Cottenie, Karl; Badosa, Anna; Green, Andy J

2012-01-01

The magnitude of community-wide dispersal is central to metacommunity models, yet dispersal is notoriously difficult to quantify in passive and cryptic dispersers such as many freshwater invertebrates. By overcoming the problem of quantifying dispersal rates, colonization rates into new habitats can provide a useful estimate of the magnitude of effective dispersal. Here we study the influence of spatial and local processes on colonization rates into new ponds that indicate differential dispersal limitation of major zooplankton taxa, with important implications for metacommunity dynamics. We identify regional and local factors that affect zooplankton colonization rates and spatial patterns in a large-scale experimental system. Our study differs from others in the unique setup of the experimental pond area by which we were able to test spatial and environmental variables at a large spatial scale. We quantified colonization rates separately for the Copepoda, Cladocera and Rotifera from samples collected over a period of 21 months in 48 newly constructed temporary ponds of 0.18-2.95 ha distributed in a restored wetland area of 2,700 ha in Doñana National Park, Southern Spain. Species richness upon initial sampling of new ponds was about one third of that in reference ponds, although the rate of detection of new species from thereon were not significantly different, probably owing to high turnover in the dynamic, temporary reference ponds. Environmental heterogeneity had no detectable effect on colonization rates in new ponds. In contrast, connectivity, space (based on latitude and longitude) and surface area were key determinants of colonization rates for copepods and cladocerans. This suggests dispersal limitation in cladocerans and copepods, but not in rotifers, possibly due to differences in propagule size and abundance.

Test of High-resolution Global and Regional Climate Model Projections

NASA Astrophysics Data System (ADS)

Stenchikov, Georgiy; Nikulin, Grigory; Hansson, Ulf; Kjellström, Erik; Raj, Jerry; Bangalath, Hamza; Osipov, Sergey

2014-05-01

In scope of CORDEX project we have simulated the past (1975-2005) and future (2006-2050) climates using the GFDL global high-resolution atmospheric model (HIRAM) and the Rossby Center nested regional model RCA4 for the Middle East and North Africa (MENA) region. Both global and nested runs were performed with roughly the same spatial resolution of 25 km in latitude and longitude, and were driven by the 2°x2.5°-resolution fields from GFDL ESM2M IPCC AR5 runs. The global HIRAM simulations could naturally account for interaction of regional processes with the larger-scale circulation features like Indian Summer Monsoon, which is lacking from regional model setup. Therefore in this study we specifically address the consistency of "global" and "regional" downscalings. The performance of RCA4, HIRAM, and ESM2M is tested based on mean, extreme, trends, seasonal and inter-annual variability of surface temperature, precipitation, and winds. The impact of climate change on dust storm activity, extreme precipitation and water resources is specifically addressed. We found that the global and regional climate projections appear to be quite consistent for the modeled period and differ more significantly from ESM2M than between each other.

How to handle spatial heterogeneity in hydrological models.

NASA Astrophysics Data System (ADS)

Loritz, Ralf; Neuper, Malte; Gupta, Hoshin; Zehe, Erwin

2017-04-01

The amount of data we observe in our environmental systems is larger than ever. This leads to a new kind of problem where hydrological modelers can have access to large datasets with various quantitative and qualitative observations but are uncertain about the information content with respect to the hydrological functioning of a landscape. For example digital elevation models obviously contain plenty of information about the topography of a landscape; however the question of relevance for Hydrology is how much of this information is important for the hydrological functioning of a landscape. This kind of question is not limited to topography and we can ask similar questions when handling distributed rainfall data or geophysical images. In this study we would like to show how one can separate dominant patterns in the landscape from idiosyncratic system details. We use a 2D numerical hillslope model in combination with an extensive research data set to test a variety of different model setups that are built upon different landscape characteristics and run by different rainfalls measurements. With the help of information theory based measures we can identify and learn how much heterogeneity is really necessary for successful hydrological simulations and how much of it we can neglect.

Isolated heart models: cardiovascular system studies and technological advances.

PubMed

Olejnickova, Veronika; Novakova, Marie; Provaznik, Ivo

2015-07-01

Isolated heart model is a relevant tool for cardiovascular system studies. It represents a highly reproducible model for studying broad spectrum of biochemical, physiological, morphological, and pharmaceutical parameters, including analysis of intrinsic heart mechanics, metabolism, and coronary vascular response. Results obtained in this model are under no influence of other organ systems, plasma concentration of hormones or ions and influence of autonomic nervous system. The review describes various isolated heart models, the modes of heart perfusion, and advantages and limitations of various experimental setups. It reports the improvements of perfusion setup according to Langendorff introduced by the authors.

Long term real-time GB_InSAR monitoring of a large rock slide

NASA Astrophysics Data System (ADS)

Crosta, G. B.; Agliardi, F.; Sosio, R.; Rivolta, C.; Mannucci, G.

2011-12-01

We analyze a long term monitoring dataset collected for a deep-seated rockslide (Ruinon, Lombardy, Italy). The rockslide has been actively monitored since 1997 by means of an in situ monitoring network (topographic benchmarks, GPS, wire extensometers) and since 2006 by a ground based radar. Monitoring data have been used to set-up and update the geological model, to identify rockslide extent and geometry, to analyse the sensitivity to seasonal changes and their impact on the reliability and early warning potential of monitoring data. GB-InSAR data allowed us to identify sectors characterized by different behaviours and associated to outcropping bedrock, thick debris cover, major structures. GB-Insar data have been used to set-up a "virtual monitoring network" by a posteriori selection of critical locations. Displacement time series extracted from GB-InSAR data provide a large amount of information even in debris-covered areas, when ground-based instrumentation fails. Such spatially-distributed, improved information, validated by selected ground-based measurements, allowed to establish new velocity and displacement thresholds for early warning purposes. The data are analysed to verify the dependency of the observed displacements on the line of sight orientation as well as on that of the framed resolution cell. Relationships with rainfall and morphological slope characteristics have been analysed to verify the sensitivity to rain intensity and amount and to distinguish among the different possible mechanisms.

Moving Beyond Streamflow Observations: Lessons From A Multi-Objective Calibration Experiment in the Mississippi Basin

NASA Astrophysics Data System (ADS)

Koppa, A.; Gebremichael, M.; Yeh, W. W. G.

2017-12-01

Calibrating hydrologic models in large catchments using a sparse network of streamflow gauges adversely affects the spatial and temporal accuracy of other water balance components which are important for climate-change, land-use and drought studies. This study combines remote sensing data and the concept of Pareto-Optimality to address the following questions: 1) What is the impact of streamflow (SF) calibration on the spatio-temporal accuracy of Evapotranspiration (ET), near-surface Soil Moisture (SM) and Total Water Storage (TWS)? 2) What is the best combination of fluxes that can be used to calibrate complex hydrological models such that both the accuracy of streamflow and the spatio-temporal accuracy of ET, SM and TWS is preserved? The study area is the Mississippi Basin in the United States (encompassing HUC-2 regions 5,6,7,9,10 and 11). 2003 and 2004, two climatologically average years are chosen for calibration and validation of the Noah-MP hydrologic model. Remotely sensed ET data is sourced from GLEAM, SM from ESA-CCI and TWS from GRACE. Single objective calibration is carried out using DDS Algorithm. For Multi objective calibration PA-DDS is used. First, the Noah-MP model is calibrated using a single objective function (Minimize Mean Square Error) for the outflow from the 6 HUC-2 sub-basins for 2003. Spatial correlograms are used to compare the spatial structure of ET, SM and TWS between the model and the remote sensing data. Spatial maps of RMSE and Mean Error are used to quantify the impact of calibrating streamflow on the accuracy of ET, SM and TWS estimates. Next, a multi-objective calibration experiment is setup to determine the pareto optimal parameter sets (pareto front) for the following cases - 1) SF and ET, 2) SF and SM, 3) SF and TWS, 4) SF, ET and SM, 5) SF, ET and TWS, 6) SF, SM and TWS, 7) SF, ET, SM and TWS. The best combination of fluxes that provides the optimal trade-off between accurate streamflow and preserving the spatio-temporal structure of ET, SM and TWS is then determined by validating the model outputs for the pareto-optimal parameter sets. Results from single-objective calibration experiment with streamflow shows that it does indeed negatively impact the accuracy of ET, SM and TWS estimates.

Impacts of wave-induced circulation in the surf zone on wave setup

NASA Astrophysics Data System (ADS)

Guérin, Thomas; Bertin, Xavier; Coulombier, Thibault; de Bakker, Anouk

2018-03-01

Wave setup corresponds to the increase in mean water level along the coast associated with the breaking of short-waves and is of key importance for coastal dynamics, as it contributes to storm surges and the generation of undertows. Although overall well explained by the divergence of the momentum flux associated with short waves in the surf zone, several studies reported substantial underestimations along the coastline. This paper investigates the impacts of the wave-induced circulation that takes place in the surf zone on wave setup, based on the analysis of 3D modelling results. A 3D phase-averaged modelling system using a vortex force formalism is applied to hindcast an unpublished field experiment, carried out at a dissipative beach under moderate to very energetic wave conditions (Hm 0 = 6m at breaking and Tp = 22s). When using an adaptive wave breaking parameterisation based on the beach slope, model predictions for water levels, short waves and undertows improved by about 30%, with errors reducing to 0.10 m, 0.10 m and 0.09 m/s, respectively. The analysis of model results suggests a very limited impact of the vertical circulation on wave setup at this dissipative beach. When extending this analysis to idealized simulations for different beach slopes ranging from 0.01 to 0.05, it shows that the contribution of the vertical circulation (horizontal and vertical advection and vertical viscosity terms) becomes more and more relevant as the beach slope increases. In contrast, for a given beach slope, the wave height at the breaking point has a limited impact on the relative contribution of the vertical circulation on the wave setup. For a slope of 0.05, the contribution of the terms associated with the vertical circulation accounts for up to 17% (i.e. a 20% increase) of the total setup at the shoreline, which provides a new explanation for the underestimations reported in previously published studies.

Spatial large-eddy simulations of contrail formation in the wake of an airliner

NASA Astrophysics Data System (ADS)

Paoli, R.

2015-12-01

Contrails and contrail-cirrus are the most uncertain contributors to aviation radiative forcing. In order to reduce this uncertainty one needs to gain more knowledge on the physicochemical processes occurring in the aircraft plume, which eventually lead to the transformation of contrails into cirrus. To that end, the accurate prediction of the number of activated particles and their spatial and size distributions at the end of the jet regime may be helpful to initialize simulations in the following vortex regime. We present the results from spatial large-eddy simulations (LES) of contrail formation in the near-field wake of a generic (but full-scale) airliner that is representative of those used in long-haul flights in current fleets. The flow around the aircraft has been computed using a RANS code taking into account the full geometry that include the engines and the aerodynamic set-up for cruise conditions. The data have been reconstructed at a plane closely behind the trailing edge of the wing and used as inflow boundary conditions for the LES. We employ fully compressible 3D LES coupled to Lagrangian microphysical module that tracks parcels of ice particles individually. The ice microphysical model is simple yet it contains the basic thermodynamic ingredients to model soot activation and water vapor deposition. Compared to one-dimensional models or even RANS, LES allow for more accurate predictions of the mixing between exhaust and ambient air. Hence, the number of activated particles and the ice growth rate can be also determined with higher accuracy. This is particularly crucial for particles located at the edge of the jet that experience large gradients of temperature and humidity. The results of the fully coupled LES (where the gas phase and the particles are solved together) are compared to offline simulations where the ice microphysics model is run using thermodynamic data from pre-calculated particle trajectories extracted from inert LES (where ice microphysics has been switched off).

Model-based aberration correction in a closed-loop wavefront-sensor-less adaptive optics system.

PubMed

Song, H; Fraanje, R; Schitter, G; Kroese, H; Vdovin, G; Verhaegen, M

2010-11-08

In many scientific and medical applications, such as laser systems and microscopes, wavefront-sensor-less (WFSless) adaptive optics (AO) systems are used to improve the laser beam quality or the image resolution by correcting the wavefront aberration in the optical path. The lack of direct wavefront measurement in WFSless AO systems imposes a challenge to achieve efficient aberration correction. This paper presents an aberration correction approach for WFSlss AO systems based on the model of the WFSless AO system and a small number of intensity measurements, where the model is identified from the input-output data of the WFSless AO system by black-box identification. This approach is validated in an experimental setup with 20 static aberrations having Kolmogorov spatial distributions. By correcting N=9 Zernike modes (N is the number of aberration modes), an intensity improvement from 49% of the maximum value to 89% has been achieved in average based on N+5=14 intensity measurements. With the worst initial intensity, an improvement from 17% of the maximum value to 86% has been achieved based on N+4=13 intensity measurements.

Limit Theory for Panel Data Models with Cross Sectional Dependence and Sequential Exogeneity.

PubMed

Kuersteiner, Guido M; Prucha, Ingmar R

2013-06-01

The paper derives a general Central Limit Theorem (CLT) and asymptotic distributions for sample moments related to panel data models with large n . The results allow for the data to be cross sectionally dependent, while at the same time allowing the regressors to be only sequentially rather than strictly exogenous. The setup is sufficiently general to accommodate situations where cross sectional dependence stems from spatial interactions and/or from the presence of common factors. The latter leads to the need for random norming. The limit theorem for sample moments is derived by showing that the moment conditions can be recast such that a martingale difference array central limit theorem can be applied. We prove such a central limit theorem by first extending results for stable convergence in Hall and Hedye (1980) to non-nested martingale arrays relevant for our applications. We illustrate our result by establishing a generalized estimation theory for GMM estimators of a fixed effect panel model without imposing i.i.d. or strict exogeneity conditions. We also discuss a class of Maximum Likelihood (ML) estimators that can be analyzed using our CLT.

A Model of Batch Scheduling for a Single Batch Processor with Additional Setups to Minimize Total Inventory Holding Cost of Parts of a Single Item Requested at Multi-due-date

NASA Astrophysics Data System (ADS)

Hakim Halim, Abdul; Ernawati; Hidayat, Nita P. A.

2018-03-01

This paper deals with a model of batch scheduling for a single batch processor on which a number of parts of a single items are to be processed. The process needs two kinds of setups, i. e., main setups required before processing any batches, and additional setups required repeatedly after the batch processor completes a certain number of batches. The parts to be processed arrive at the shop floor at the times coinciding with their respective starting times of processing, and the completed parts are to be delivered at multiple due dates. The objective adopted for the model is that of minimizing total inventory holding cost consisting of holding cost per unit time for a part in completed batches, and that in in-process batches. The formulation of total inventory holding cost is derived from the so-called actual flow time defined as the interval between arrival times of parts at the production line and delivery times of the completed parts. The actual flow time satisfies not only minimum inventory but also arrival and delivery just in times. An algorithm to solve the model is proposed and a numerical example is shown.

High current table-top setup for femtosecond gas electron diffraction.

PubMed

Zandi, Omid; Wilkin, Kyle J; Xiong, Yanwei; Centurion, Martin

2017-07-01

We have constructed an experimental setup for gas phase electron diffraction with femtosecond resolution and a high average beam current. While gas electron diffraction has been successful at determining molecular structures, it has been a challenge to reach femtosecond resolution while maintaining sufficient beam current to retrieve structures with high spatial resolution. The main challenges are the Coulomb force that leads to broadening of the electron pulses and the temporal blurring that results from the velocity mismatch between the laser and electron pulses as they traverse the sample. We present here a device that uses pulse compression to overcome the Coulomb broadening and deliver femtosecond electron pulses on a gas target. The velocity mismatch can be compensated using laser pulses with a tilted intensity front to excite the sample. The temporal resolution of the setup was determined with a streak camera to be better than 400 fs for pulses with up to half a million electrons and a kinetic energy of 90 keV. The high charge per pulse, combined with a repetition rate of 5 kHz, results in an average beam current that is between one and two orders of magnitude higher than previously demonstrated.

Thermographic measurements of high-speed metal cutting

NASA Astrophysics Data System (ADS)

Mueller, Bernhard; Renz, Ulrich

2002-03-01

Thermographic measurements of a high-speed cutting process have been performed with an infrared camera. To realize images without motion blur the integration times were reduced to a few microseconds. Since the high tool wear influences the measured temperatures a set-up has been realized which enables small cutting lengths. Only single images have been recorded because the process is too fast to acquire a sequence of images even with the frame rate of the very fast infrared camera which has been used. To expose the camera when the rotating tool is in the middle of the camera image an experimental set-up with a light barrier and a digital delay generator with a time resolution of 1 ns has been realized. This enables a very exact triggering of the camera at the desired position of the tool in the image. Since the cutting depth is between 0.1 and 0.2 mm a high spatial resolution was also necessary which was obtained by a special close-up lens allowing a resolution of app. 45 microns. The experimental set-up will be described and infrared images and evaluated temperatures of a titanium alloy and a carbon steel will be presented for cutting speeds up to 42 m/s.

Quantitative estimation of magnetic nanoparticle distributions in one dimension using low-frequency continuous wave electron paramagnetic resonance

NASA Astrophysics Data System (ADS)

Coene, A.; Crevecoeur, G.; Dupré, L.; Vaes, P.

2013-06-01

In recent years, magnetic nanoparticles (MNPs) have gained increased attention due to their superparamagnetic properties. These properties allow the development of innovative biomedical applications such as targeted drug delivery and tumour heating. However, these modalities lack effective operation arising from the inaccurate quantification of the spatial MNP distribution. This paper proposes an approach for assessing the one-dimensional (1D) MNP distribution using electron paramagnetic resonance (EPR). EPR is able to accurately determine the MNP concentration in a single volume but not the MNP distribution throughout this volume. A new approach that exploits the solution of inverse problems for the correct interpretation of the measured EPR signals, is investigated. We achieve reconstruction of the 1D distribution of MNPs using EPR. Furthermore, the impact of temperature control on the reconstructed distributions is analysed by comparing two EPR setups where the latter setup is temperature controlled. Reconstruction quality for the temperature-controlled setup increases with an average of 5% and with a maximum increase of 13% for distributions with relatively lower iron concentrations and higher resolutions. However, these measurements are only a validation of our new method and form no hard limits.

High current table-top setup for femtosecond gas electron diffraction

DOE PAGES

Zandi, Omid; Wilkin, Kyle J.; Xiong, Yanwei; ...

2017-05-08

Here, we have constructed an experimental setup for gas phase electron diffraction with femtosecond resolution and a high average beam current. While gas electron diffraction has been successful at determining molecular structures, it has been a challenge to reach femtosecond resolution while maintaining sufficient beam current to retrieve structures with high spatial resolution. The main challenges are the Coulomb force that leads to broadening of the electron pulses and the temporal blurring that results from the velocity mismatch between the laser and electron pulses as they traverse the sample. We also present here a device that uses pulse compression tomore » overcome the Coulomb broadening and deliver femtosecond electron pulses on a gas target. The velocity mismatch can be compensated using laser pulses with a tilted intensity front to excite the sample. The temporal resolution of the setup was determined with a streak camera to be better than 400 fs for pulses with up to half a million electrons and a kinetic energy of 90 keV. Finally, the high charge per pulse, combined with a repetition rate of 5 kHz, results in an average beam current that is between one and two orders of magnitude higher than previously demonstrated.« less

3D near-infrared imaging based on a single-photon avalanche diode array sensor

NASA Astrophysics Data System (ADS)

Mata Pavia, Juan; Charbon, Edoardo; Wolf, Martin

2011-07-01

An imager for optical tomography was designed based on a detector with 128×128 single-photon pixels that included a bank of 32 time-to-digital converters. Due to the high spatial resolution and the possibility of performing time resolved measurements, a new contact-less setup has been conceived in which scanning of the object is not necessary. This enables one to perform high-resolution optical tomography with much higher acquisition rate, which is fundamental in clinical applications. The setup has a resolution of 97ps and operates with a laser source with an average power of 3mW. This new imaging system generated a high amount of data that could not be processed by established methods, therefore new concepts and algorithms were developed to take full advantage of it. Images were generated using a new reconstruction algorithm that combined general inverse problem methods with Fourier transforms in order to reduce the complexity of the problem. Simulations show that the potential resolution of the new setup is in the order of millimeters. Experiments have been performed to confirm this potential. Images derived from the measurements demonstrate that we have already reached a resolution of 5mm.

An attempt at estimating Paris area CO2 emissions from atmospheric concentration measurements

NASA Astrophysics Data System (ADS)

Bréon, F. M.; Broquet, G.; Puygrenier, V.; Chevallier, F.; Xueref-Rémy, I.; Ramonet, M.; Dieudonné, E.; Lopez, M.; Schmidt, M.; Perrussel, O.; Ciais, P.

2014-04-01

Atmospheric concentration measurements are used to adjust the daily to monthly budget of CO2 emissions from the AirParif inventory of the Paris agglomeration. We use 5 atmospheric monitoring sites including one at the top of the Eiffel tower. The atmospheric inversion is based on a Bayesian approach, and relies on an atmospheric transport model with a spatial resolution of 2 km with boundary conditions from a global coarse grid transport model. The inversion tool adjusts the CO2 fluxes (anthropogenic and biogenic) with a temporal resolution of 6 h, assuming temporal correlation of emissions uncertainties within the daily cycle and from day to day, while keeping the a priori spatial distribution from the emission inventory. The inversion significantly improves the agreement between measured and modelled concentrations. However, the amplitude of the atmospheric transport errors is often large compared to the CO2 gradients between the sites that are used to estimate the fluxes, in particular for the Eiffel tower station. In addition, we sometime observe large model-measurement differences upwind from the Paris agglomeration, which confirms the large and poorly constrained contribution from distant sources and sinks included in the prescribed CO2 boundary conditions These results suggest that (i) the Eiffel measurements at 300 m above ground cannot be used with the current system and (ii) the inversion shall rely on the measured upwind-downwind gradients rather than the raw mole fraction measurements. With such setup, realistic emissions are retrieved for two 30 day periods. Similar inversions over longer periods are necessary for a proper evaluation of the results.

Simulation of Orographically-Driven Precipitation in Southern California

NASA Astrophysics Data System (ADS)

Carpenter, T. M.; Georgakakos, K. P.

2008-12-01

The proximity of the Pacific Ocean to the Transverse and Peninsular Mountain Ranges of coastal Southern California may lead to significant, orographically-enhanced precipitation in the region. With abundant moisture, such as evidenced in Pineapple Express events or atmospheric rivers, this precipitation may lead to other hydrologic hazards as flash flooding, landslides or debris flows. Available precipitation observation networks are relatively sparse in the mountainous regions and often do not capture the spatial variation of these events with high resolution. This study aims to simulate the topographically-driven precipitation over Southern California with high spatial resolution using a simplified orographic precipitation model. The model employs potential theory flow to estimate steady state three-dimensional wind fields for given free stream velocity forcing winds, atmospheric moisture advection, and cloud and precipitation microphysics proposed by Kessler (1969). The advantage of this modeling set-up is the computational efficiency as compared to regional mesoscale models such as the MM5. For this application, the Southern California region, comprised of the counties of Santa Barbara, Ventura, Los Angeles, Orange, and San Diego, and portions of San Bernardino and Riverside counties, are modeled at a 3-km resolution. The orographic precipitation model is forced by free stream wind velocities given by the 700mb winds from the NCEP Reanalysis I dataset. Atmospheric moisture initial conditions are defined also by the NCEP Reanalysis I dataset, and updated 4x- daily with the available 6-hourly NCEP Reanalysis forcing. This paper presents a comparison of the simulated precipitation to observations for over a variety of spatial scales and over the historical wet season periods from October 2000 to April 2005. The comparison is made over several performance measurements including (a) the occurrence/non-occurrence of precipitation, (b) overall bias and correlation, (c) bias and correlation for precipitation exceeding given thresholds, and (d) the frequency distributions of non-zero precipitation. The results of simulation performance are compared to reported results of other orographically-driven precipitation and regional mesoscale model studies within the Western U.S.

Huygens' inspired multi-pendulum setups: Experiments and stability analysis

NASA Astrophysics Data System (ADS)

Hoogeboom, F. N.; Pogromsky, A. Y.; Nijmeijer, H.

2016-11-01

This paper examines synchronization of a set of metronomes placed on a lightweight foam platform. Two configurations of the set of metronomes are considered: a row setup containing one-dimensional coupling and a cross setup containing two-dimensional coupling. Depending on the configuration and coupling between the metronomes, i.e., the platform parameters, in- and/or anti-phase synchronized behavior is observed in the experiments. To explain this behavior, mathematical models of a metronome and experimental setups have been derived and used in a local stability analysis. It is numerically and experimentally demonstrated that varying the coupling parameters for both configurations has a significant influence on the stability of the synchronized solutions.

Low-cost laser speckle contrast imaging of blood flow using a webcam.

PubMed

Richards, Lisa M; Kazmi, S M Shams; Davis, Janel L; Olin, Katherine E; Dunn, Andrew K

2013-01-01

Laser speckle contrast imaging has become a widely used tool for dynamic imaging of blood flow, both in animal models and in the clinic. Typically, laser speckle contrast imaging is performed using scientific-grade instrumentation. However, due to recent advances in camera technology, these expensive components may not be necessary to produce accurate images. In this paper, we demonstrate that a consumer-grade webcam can be used to visualize changes in flow, both in a microfluidic flow phantom and in vivo in a mouse model. A two-camera setup was used to simultaneously image with a high performance monochrome CCD camera and the webcam for direct comparison. The webcam was also tested with inexpensive aspheric lenses and a laser pointer for a complete low-cost, compact setup ($90, 5.6 cm length, 25 g). The CCD and webcam showed excellent agreement with the two-camera setup, and the inexpensive setup was used to image dynamic blood flow changes before and after a targeted cerebral occlusion.

Low-cost laser speckle contrast imaging of blood flow using a webcam

PubMed Central

Richards, Lisa M.; Kazmi, S. M. Shams; Davis, Janel L.; Olin, Katherine E.; Dunn, Andrew K.

2013-01-01

Laser speckle contrast imaging has become a widely used tool for dynamic imaging of blood flow, both in animal models and in the clinic. Typically, laser speckle contrast imaging is performed using scientific-grade instrumentation. However, due to recent advances in camera technology, these expensive components may not be necessary to produce accurate images. In this paper, we demonstrate that a consumer-grade webcam can be used to visualize changes in flow, both in a microfluidic flow phantom and in vivo in a mouse model. A two-camera setup was used to simultaneously image with a high performance monochrome CCD camera and the webcam for direct comparison. The webcam was also tested with inexpensive aspheric lenses and a laser pointer for a complete low-cost, compact setup ($90, 5.6 cm length, 25 g). The CCD and webcam showed excellent agreement with the two-camera setup, and the inexpensive setup was used to image dynamic blood flow changes before and after a targeted cerebral occlusion. PMID:24156082

Measurement of rabbit eardrum vibration through stroboscopic digital holography

DOE Office of Scientific and Technical Information (OSTI.GOV)

De Greef, Daniël; Dirckx, Joris J. J.

In this work, we present a setup for high-power single shot stroboscopic digital holography and demonstrate it in an application on rabbit eardrum vibration measurement. The setup is able to make full-field time-resolved measurements of vibrating surfaces with a precision in the nanometer range in a broad frequency range. The height displacement of the measured object is visualized over the entire surface as a function of time. Vibration magnitude and phase maps can be extracted from these data, the latter proving to be very useful to reveal phase delays across the surface. Such deviations from modal motion indicate energy lossesmore » due to internal damping, in contrast to purely elastic mechanics. This is of great interest in middle ear mechanics and finite element modelling. In our setup, short laser pulses are fired at selected instants within the surface vibration period and are recorded by a CCD camera. The timing of the pulses and the exposure of the camera are synchronized to the vibration phase by a microprocessor. The high-power frequency-doubled Nd:YAG laser produces pulses containing up to 5 mJ of energy, which is amply sufficient to record single-shot holograms. As the laser pulse length is 8 ns and the smallest time step of the trigger electronics is 1 μs, vibration measurements of frequencies up to 250 kHz are achievable through this method, provided that the maximum vibration amplitude exceeds a few nanometers. In our application, middle ear mechanics, measuring frequencies extend from 5 Hz to 20 kHz. The experimental setup will be presented, as well as results of measurements on a stretched circular rubber membrane and a rabbit's eardrum. Two of the challenges when measuring biological tissues, such as the eardrum, are low reflectivity and fast dehydration. To increase reflectivity, a coating is applied and to counteract the undesirable effects of tissue dehydration, the measurement setup and software have been optimized for speed without compromising on the quality. Results of a repeatability test will be presented as well. Since the method measures the membrane motion as a function of time in small time steps, we do not only measure vibration amplitude like in time-average holography, but we can also measure non-linear elastic and transient behaviour. In conclusion, the combination of good spatial, depth and time resolution with the fast data acquisition and very wide frequency range make our technique applicable in a number of fields, including biological tissue vibrations.« less

DOE Office of Scientific and Technical Information (OSTI.GOV)

Churchill, R. Michael

Apache Spark is explored as a tool for analyzing large data sets from the magnetic fusion simulation code XGCI. Implementation details of Apache Spark on the NERSC Edison supercomputer are discussed, including binary file reading, and parameter setup. Here, an unsupervised machine learning algorithm, k-means clustering, is applied to XGCI particle distribution function data, showing that highly turbulent spatial regions do not have common coherent structures, but rather broad, ring-like structures in velocity space.

A system to simulate and reproduce audio-visual environments for spatial hearing research.

PubMed

Seeber, Bernhard U; Kerber, Stefan; Hafter, Ervin R

2010-02-01

The article reports the experience gained from two implementations of the "Simulated Open-Field Environment" (SOFE), a setup that allows sounds to be played at calibrated levels over a wide frequency range from multiple loudspeakers in an anechoic chamber. Playing sounds from loudspeakers in the free-field has the advantage that each participant listens with their own ears, and individual characteristics of the ears are captured in the sound they hear. This makes an easy and accurate comparison between various listeners with and without hearing devices possible. The SOFE uses custom calibration software to assure individual equalization of each loudspeaker. Room simulation software creates the spatio-temporal reflection pattern of sound sources in rooms which is played via the SOFE loudspeakers. The sound playback system is complemented by a video projection facility which can be used to collect or give feedback or to study auditory-visual interaction. The article discusses acoustical and technical requirements for accurate sound playback against the specific needs in hearing research. An introduction to software concepts is given which allow easy, high-level control of the setup and thus fast experimental development, turning the SOFE into a "Swiss army knife" tool for auditory, spatial hearing and audio-visual research. Crown Copyright 2009. Published by Elsevier B.V. All rights reserved.

A System to Simulate and Reproduce Audio-Visual Environments for Spatial Hearing Research

PubMed Central

Seeber, Bernhard U.; Kerber, Stefan; Hafter, Ervin R.

2009-01-01

The article reports the experience gained from two implementations of the “Simulated Open-Field Environment” (SOFE), a setup that allows sounds to be played at calibrated levels over a wide frequency range from multiple loudspeakers in an anechoic chamber. Playing sounds from loudspeakers in the free-field has the advantage that each participant listens with their own ears, and individual characteristics of the ears are captured in the sound they hear. This makes an easy and accurate comparison between various listeners with and without hearing devices possible. The SOFE uses custom calibration software to assure individual equalization of each loudspeaker. Room simulation software creates the spatio-temporal reflection pattern of sound sources in rooms which is played via the SOFE loudspeakers. The sound playback system is complemented by a video projection facility which can be used to collect or give feedback or to study auditory-visual interaction. The article discusses acoustical and technical requirements for accurate sound playback against the specific needs in hearing research. An introduction to software concepts is given which allow easy, high-level control of the setup and thus fast experimental development, turning the SOFE into a “Swiss army knife” tool for auditory, spatial hearing and audio-visual research. PMID:19909802

Ultrafast random-access scanning in two-photon microscopy using acousto-optic deflectors.

PubMed

Salomé, R; Kremer, Y; Dieudonné, S; Léger, J-F; Krichevsky, O; Wyart, C; Chatenay, D; Bourdieu, L

2006-06-30

Two-photon scanning microscopy (TPSM) is a powerful tool for imaging deep inside living tissues with sub-cellular resolution. The temporal resolution of TPSM is however strongly limited by the galvanometric mirrors used to steer the laser beam. Fast physiological events can therefore only be followed by scanning repeatedly a single line within the field of view. Because acousto-optic deflectors (AODs) are non-mechanical devices, they allow access at any point within the field of view on a microsecond time scale and are therefore excellent candidates to improve the temporal resolution of TPSM. However, the use of AOD-based scanners with femtosecond pulses raises several technical difficulties. In this paper, we describe an all-digital TPSM setup based on two crossed AODs. It includes in particular an acousto-optic modulator (AOM) placed at 45 degrees with respect to the AODs to pre-compensate for the large spatial distortions of femtosecond pulses occurring in the AODs, in order to optimize the spatial resolution and the fluorescence excitation. Our setup allows recording from freely selectable point-of-interest at high speed (1kHz). By maximizing the time spent on points of interest, random-access TPSM (RA-TPSM) constitutes a promising method for multiunit recordings with millisecond resolution in biological tissues.

Scanless nonlinear optical microscope for image reconstruction and space-time correlation analysis

NASA Astrophysics Data System (ADS)

Ceffa, N. G.; Radaelli, F.; Pozzi, P.; Collini, M.; Sironi, L.; D'alfonso, L.; Chirico, G.

2017-06-01

Optical Microscopy has been applied to life science from its birth and reached widespread application due to its major advantages: limited perturbation of the biological tissue and the easy accessibility of the light sources. However, as the spatial and time resolution requirements and the time stability of the microscopes increase, researchers are struggling against some of its limitations: limited transparency and the refractivity of the living tissue to light and the field perturbations induced by the path in the tissue. We have developed a compact stand-alone, completely scan-less, optical setup that allows to acquire non-linear excitation images and to measure the sample dynamics simultaneously on an ensemble of arbitrary chosen regions of interests. The image is obtained by shining a square array of spots on the sample obtained by a spatial light modulator and by shifting it (10 ms refresh time) on the sample. The final image is computed from the superposition of (100-1000) images. Filtering procedures can be applied to the raw images of the excitation array before building the image. We discuss results that show how this setup can be used for the correction of wave front aberrations induced by turbid samples (such as living tissues) and for the computation of space-time cross-correlations in complex networks.

Infrared absorption spectroscopy and sensing of protein monolayers using high performance enhancing substrates and a mobile phone (Conference Presentation)

NASA Astrophysics Data System (ADS)

Dana, Aykutlu; Ayas, Sencer; Bakan, Gokhan; Ozgur, Erol; Guner, Hasan; Celebi, Kemal

2016-09-01

Infrared absorption spectroscopy has greatly benefited from the electromagnetic field enhancement offered by plasmonic surfaces. However, because of the localized nature of plasmonic fields, such field enhancements are limited to nm-scale volumes. Here, we demonstrate that a relatively small, but spatially-uniform field enhancement can yield a superior infrared detection performance compared to the plasmonic field enhancement exhibited by optimized infrared nanoantennas. A specifically designed CaF2/Al thin film surface is shown to enable observation of stronger vibrational signals from the probe material, with wider bandwidth and a deeper spatial extent of the field enhancement as compared to optimized plasmonic surfaces. It is demonstrated that the surface structure presented here can enable chemically specific and label-free detection of organic monolayers using surface enhanced infrared spectroscopy. Also, a low cost hand held infrared absorption measurement setup is demonstrated using a miniature bolometric sensor and a mobile phone. A specifically designed grating in combination with an IR light source yields an IR spectrometer covering 7-12 um range, with about 100 cm-1 resolution. Combining the enhancing substrates with the spectroscopy setup, low cost, high sensitivity mobile infrared sensing is enabled. The results have implications in homeland security and environmental monitoring as well as chemical analysis.

FLUXCOM - Overview and First Synthesis

NASA Astrophysics Data System (ADS)

Jung, M.; Ichii, K.; Tramontana, G.; Camps-Valls, G.; Schwalm, C. R.; Papale, D.; Reichstein, M.; Gans, F.; Weber, U.

2015-12-01

We present a community effort aiming at generating an ensemble of global gridded flux products by upscaling FLUXNET data using an array of different machine learning methods including regression/model tree ensembles, neural networks, and kernel machines. We produced products for gross primary production, terrestrial ecosystem respiration, net ecosystem exchange, latent heat, sensible heat, and net radiation for two experimental protocols: 1) at a high spatial and 8-daily temporal resolution (5 arc-minute) using only remote sensing based inputs for the MODIS era; 2) 30 year records of daily, 0.5 degree spatial resolution by incorporating meteorological driver data. Within each set-up, all machine learning methods were trained with the same input data for carbon and energy fluxes respectively. Sets of input driver variables were derived using an extensive formal variable selection exercise. The performance of the extrapolation capacities of the approaches is assessed with a fully internally consistent cross-validation. We perform cross-consistency checks of the gridded flux products with independent data streams from atmospheric inversions (NEE), sun-induced fluorescence (GPP), catchment water balances (LE, H), satellite products (Rn), and process-models. We analyze the uncertainties of the gridded flux products and for example provide a breakdown of the uncertainty of mean annual GPP originating from different machine learning methods, different climate input data sets, and different flux partitioning methods. The FLUXCOM archive will provide an unprecedented source of information for water, energy, and carbon cycle studies.

Calibration of medium-resolution monochrome cathode ray tube displays for the purpose of board examinations.

PubMed

Evanoff, M G; Roehrig, H; Giffords, R S; Capp, M P; Rovinelli, R J; Hartmann, W H; Merritt, C

2001-06-01

This report discusses calibration and set-up procedures for medium-resolution monochrome cathode ray tubes (CRTs) taken in preparation of the oral portion of the board examination of the American Board of Radiology (ABR). The board examinations took place in more than 100 rooms of a hotel. There was one display-station (a computer and the associated CRT display) in each of the hotel rooms used for the examinations. The examinations covered the radiologic specialties cardiopulmonary, musculoskeletal, gastrointestinal, vascular, pediatric, and genitourinary. The software used for set-up and calibration was the VeriLUM 4.0 package from Image Smiths in Germantown, MD. The set-up included setting minimum luminance and maximum luminance, as well as positioning of the CRT in each examination room with respect to reflections of roomlights. The calibration for the grey scale rendition was done meeting the Digital Imaging and communication in Medicine (DICOM) 14 Standard Display Function. We describe these procedures, and present the calibration data in. tables and graphs, listing initial values of minimum luminance, maximum luminance, and grey scale rendition (DICOM 14 standard display function). Changes of these parameters over the duration of the examination were observed and recorded on 11 monitors in a particular room. These changes strongly suggest that all calibrated CRTs be monitored over the duration of the examination. In addition, other CRT performance data affecting image quality such as spatial resolution should be included in set-up and image quality-control procedures.

Optimized 31P MRS in the human brain at 7 T with a dedicated RF coil setup

PubMed Central

van de Bank, Bart L.; Orzada, Stephan; Smits, Frits; Lagemaat, Miriam W.; Rodgers, Christopher T.; Bitz, Andreas K.

2015-01-01

The design and construction of a dedicated RF coil setup for human brain imaging (1H) and spectroscopy (31P) at ultra‐high magnetic field strength (7 T) is presented. The setup is optimized for signal handling at the resonance frequencies for 1H (297.2 MHz) and 31P (120.3 MHz). It consists of an eight‐channel 1H transmit–receive head coil with multi‐transmit capabilities, and an insertable, actively detunable 31P birdcage (transmit–receive and transmit only), which can be combined with a seven‐channel receive‐only 31P array. The setup enables anatomical imaging and 31P studies without removal of the coil or the patient. By separating transmit and receive channels and by optimized addition of array signals with whitened singular value decomposition we can obtain a sevenfold increase in SNR of 31P signals in the occipital lobe of the human brain compared with the birdcage alone. These signals can be further enhanced by 30 ± 9% using the nuclear Overhauser effect by B 1‐shimmed low‐power irradiation of water protons. Together, these features enable acquisition of 31P MRSI at high spatial resolutions (3.0 cm3 voxel) in the occipital lobe of the human brain in clinically acceptable scan times (~15 min). © 2015 The Authors. NMR in Biomedicine published by John Wiley & Sons Ltd. PMID:26492089

Kinesthetic and vestibular information modulate alpha activity during spatial navigation: a mobile EEG study

PubMed Central

Ehinger, Benedikt V.; Fischer, Petra; Gert, Anna L.; Kaufhold, Lilli; Weber, Felix; Pipa, Gordon; König, Peter

2014-01-01

In everyday life, spatial navigation involving locomotion provides congruent visual, vestibular, and kinesthetic information that need to be integrated. Yet, previous studies on human brain activity during navigation focus on stationary setups, neglecting vestibular and kinesthetic feedback. The aim of our work is to uncover the influence of those sensory modalities on cortical processing. We developed a fully immersive virtual reality setup combined with high-density mobile electroencephalography (EEG). Participants traversed one leg of a triangle, turned on the spot, continued along the second leg, and finally indicated the location of their starting position. Vestibular and kinesthetic information was provided either in combination, as isolated sources of information, or not at all within a 2 × 2 full factorial intra-subjects design. EEG data were processed by clustering independent components, and time-frequency spectrograms were calculated. In parietal, occipital, and temporal clusters, we detected alpha suppression during the turning movement, which is associated with a heightened demand of visuo-attentional processing and closely resembles results reported in previous stationary studies. This decrease is present in all conditions and therefore seems to generalize to more natural settings. Yet, in incongruent conditions, when different sensory modalities did not match, the decrease is significantly stronger. Additionally, in more anterior areas we found that providing only vestibular but no kinesthetic information results in alpha increase. These observations demonstrate that stationary experiments omit important aspects of sensory feedback. Therefore, it is important to develop more natural experimental settings in order to capture a more complete picture of neural correlates of spatial navigation. PMID:24616681

Kinesthetic and vestibular information modulate alpha activity during spatial navigation: a mobile EEG study.

PubMed

Ehinger, Benedikt V; Fischer, Petra; Gert, Anna L; Kaufhold, Lilli; Weber, Felix; Pipa, Gordon; König, Peter

2014-01-01

In everyday life, spatial navigation involving locomotion provides congruent visual, vestibular, and kinesthetic information that need to be integrated. Yet, previous studies on human brain activity during navigation focus on stationary setups, neglecting vestibular and kinesthetic feedback. The aim of our work is to uncover the influence of those sensory modalities on cortical processing. We developed a fully immersive virtual reality setup combined with high-density mobile electroencephalography (EEG). Participants traversed one leg of a triangle, turned on the spot, continued along the second leg, and finally indicated the location of their starting position. Vestibular and kinesthetic information was provided either in combination, as isolated sources of information, or not at all within a 2 × 2 full factorial intra-subjects design. EEG data were processed by clustering independent components, and time-frequency spectrograms were calculated. In parietal, occipital, and temporal clusters, we detected alpha suppression during the turning movement, which is associated with a heightened demand of visuo-attentional processing and closely resembles results reported in previous stationary studies. This decrease is present in all conditions and therefore seems to generalize to more natural settings. Yet, in incongruent conditions, when different sensory modalities did not match, the decrease is significantly stronger. Additionally, in more anterior areas we found that providing only vestibular but no kinesthetic information results in alpha increase. These observations demonstrate that stationary experiments omit important aspects of sensory feedback. Therefore, it is important to develop more natural experimental settings in order to capture a more complete picture of neural correlates of spatial navigation.

X-ray fluorescence beamline at the LNLS: Current instrumentation and future developments (abstract)

NASA Astrophysics Data System (ADS)

Pérez, C. A.; Bueno, M. I. S.; Neuenshwander, R. T.; Sánchez, H. J.; Tolentino, H.

2002-03-01

The x-ray fluorescence (XRF) beamline, constructed at the Brazilian National Synchrotron Radiation Laboratory (LNLS-http://www.lnls.br), has been operating for the external users since August of 1998 (C. A. Pérez et al., Proc. of the European Conference on Energy Dispersive X-Ray Spectrometry, Bologna, Italy, 1998, pp. 125-129). The synchrotron source for this beamline is the D09B (15°) dipole magnet of the LNLS storage ring. Two main experimental setups are mounted at the XRF beamline. One consists of a high vacuum chamber adapted to carry out experiments in grazing excitation conditions. This allows chemical trace and ultratrace element determination on several samples, mainly coming from environmental and biological sciences. Another setup consists of an experimental station, operated in air, in which x-ray fluorescence analysis with spatial resolution can be done. This station is equipped with a fine conical capillary, capable of achieving 20 μm spatial resolution, and with an optical microscope in order to select the region of interest on the sample surface. In this work, the main characteristic of the beamline, experimental stations as well as the description of some new experimental facilities will be given. Future development in the instrumentation focuses on an appropriate x-ray optic to be able to carry out chemical trace analysis of light elements using the total x-ray fluorescence technique. Also, chemical mapping below 10 μm spatial resolution, while keeping high flux of photon on the sample, will be achieved by using the Kirkpatrick-Baez x-ray microfocusing optic.

Stereo Refractive Imaging of Breaking Free-Surface Waves in the Surf Zone

NASA Astrophysics Data System (ADS)

Mandel, Tracy; Weitzman, Joel; Koseff, Jeffrey; Environmental Fluid Mechanics Laboratory Team

2014-11-01

Ocean waves drive the evolution of coastlines across the globe. Wave breaking suspends sediments, while wave run-up, run-down, and the undertow transport this sediment across the shore. Complex bathymetric features and natural biotic communities can influence all of these dynamics, and provide protection against erosion and flooding. However, our knowledge of the exact mechanisms by which this occurs, and how they can be modeled and parameterized, is limited. We have conducted a series of controlled laboratory experiments with the goal of elucidating these details. These have focused on quantifying the spatially-varying characteristics of breaking waves and developing more accurate techniques for measuring and predicting wave setup, setdown, and run-up. Using dynamic refraction stereo imaging, data on free-surface slope and height can be obtained over an entire plane. Wave evolution is thus obtained with high spatial precision. These surface features are compared with measures of instantaneous turbulence and mean currents within the water column. We then use this newly-developed ability to resolve three-dimensional surface features over a canopy of seagrass mimics, in order to validate theoretical formulations of wave-vegetation interactions in the surf zone.

Pulse-analysis-pulse investigation of femtosecond laser-induced periodic surface structures on silicon in air.

PubMed

Oboňa, J Vincenc; Skolski, J Z P; Römer, G R B E; in t Veld, A J Huis

2014-04-21

A new approach to experimentally investigate laser-induced periodic surface structures (LIPSSs) is introduced. Silicon was iteratively exposed to femtosecond laser pulses at λ = 800 nm and normal incidence in ambient air and at a fluence slightly over the single-pulse modification threshold. After each laser pulse, the topography of the surface was inspected by confocal microscopy. Subsequently, the sample was reproducibly repositioned in the laser setup, to be exposed to the next laser pulse. By this approach, the initiation and spatial evolution ("growth") of the LIPSSs were analyzed as function of the number of pulses applied. It was found that, after the first laser pulses, the ridges of the LIPSSs elevate, and valleys between the ridges deepen, by a few tens of nanometers relative to the initial surface. An electromagnetic model, discussed in earlier works, predicted that the spatial periodicity of LIPSSs decreases with the number of laser pulses applied. This implies material transport and reorganization of the irradiated material on the surface, due to each laser pulse. However, our experiments show a negligible shift of the lateral positions of the LIPSSs on the surface.

Experimental feasibility of multistatic holography for breast microwave radar image reconstruction.

PubMed

Flores-Tapia, Daniel; Rodriguez, Diego; Solis, Mario; Kopotun, Nikita; Latif, Saeed; Maizlish, Oleksandr; Fu, Lei; Gui, Yonsheng; Hu, Can-Ming; Pistorius, Stephen

2016-08-01

The goal of this study was to assess the experimental feasibility of circular multistatic holography, a novel breast microwave radar reconstruction approach, using experimental datasets recorded using a preclinical experimental setup. The performance of this approach was quantitatively evaluated by calculating the signal to clutter ratio (SCR), contrast to clutter ratio (CCR), tumor to fibroglandular response ratio (TFRR), spatial accuracy, and reconstruction time. Five datasets were recorded using synthetic phantoms with the dielectric properties of breast tissue in the 1-6 GHz range using a custom radar system developed by the authors. The datasets contained synthetic structures that mimic the dielectric properties of fibroglandular breast tissues. Four of these datasets the authors covered an 8 mm inclusion that emulated a tumor. A custom microwave radar system developed at the University of Manitoba was used to record the radar responses from the phantoms. The datasets were reconstructed using the proposed multistatic approach as well as with a monostatic holography approach that has been previously shown to yield the images with the highest contrast and focal quality. For all reconstructions, the location of the synthetic tumors in the experimental setup was consistent with the position in the both the monostatic and multistatic reconstructed images. The average spatial error was less than 4 mm, which is half the spatial resolution of the data acquisition system. The average SCR, CCR, and TFRR of the images reconstructed with the multistatic approach were 15.0, 9.4, and 10.0 dB, respectively. In comparison, monostatic images obtained using the datasets from the same experimental setups yielded average SCR, CCR, and TFRR values of 12.8, 4.9, and 5.9 dB. No artifacts, defined as responses generated by the reconstruction method of at least half the energy of the tumor signatures, were noted in the multistatic reconstructions. The average execution time of the images formed using the proposed approach was 4 s, which is one order of magnitude faster than the current state-of-the-art time-domain multistatic breast microwave radar reconstruction algorithms. The images generated by the proposed method show that multistatic holography is capable of forming spatially accurate images in real-time with signal to clutter levels and contrast values higher than other published monostatic and multistatic cylindrical radar reconstruction approaches. In comparison to the monostatic holographic approach, the images generated by the proposed multistatic approach had SCR values that were at least 50% higher. The multistatic images had CCR and TFRR values at least 200% greater than those formed using a monostatic approach.

A long arm for ultrasound: a combined robotic focused ultrasound setup for magnetic resonance-guided focused ultrasound surgery.

PubMed

Krafft, Axel J; Jenne, Jürgen W; Maier, Florian; Stafford, R Jason; Huber, Peter E; Semmler, Wolfhard; Bock, Michael

2010-05-01

Focused ultrasound surgery (FUS) is a highly precise noninvasive procedure to ablate pathogenic tissue. FUS therapy is often combined with magnetic resonance (MR) imaging as MR imaging offers excellent target identification and allows for continuous monitoring of FUS induced temperature changes. As the dimensions of the ultrasound (US) focus are typically much smaller than the targeted volume, multiple sonications and focus repositioning are interleaved to scan the focus over the target volume. Focal scanning can be achieved electronically by using phased-array US transducers or mechanically by using dedicated mechanical actuators. In this study, the authors propose and evaluate the precision of a combined robotic FUS setup to overcome some of the limitations of the existing MRgFUS systems. Such systems are typically integrated into the patient table of the MR scanner and thus only provide an application of the US wave within a limited spatial range from below the patient. The fully MR-compatible robotic assistance system InnoMotion (InnoMedic GmbH, Herxheim, Germany) was originally designed for MR-guided interventions with needles. It offers five pneumatically driven degrees of freedom and can be moved over a wide range within the bore of the magnet. In this work, the robotic system was combined with a fixed-focus US transducer (frequency: 1.7 MHz; focal length: 68 mm, and numerical aperture: 0.44) that was integrated into a dedicated, in-house developed treatment unit for FUS application. A series of MR-guided focal scanning procedures was performed in a polyacrylamide-egg white gel phantom to assess the positioning accuracy of the combined FUS setup. In animal experiments with a 3-month-old domestic pig, the system's potential and suitability for MRgFUS was tested. In phantom experiments, a total targeting precision of about 3 mm was found, which is comparable to that of the existing MRgFUS systems. Focus positioning could be performed within a few seconds. During in vivo experiments, a defined pattern of single thermal lesions and a therapeutically relevant confluent thermal lesion could be created. The creation of local tissue necrosis by coagulation was confirmed by post-FUS MR imaging and histological examinations on the treated tissue sample. During all sonications in phantom and in vivo, reliable MR imaging and online MR thermometry could be performed without compromises due to operation of the combined robotic FUS setup. Compared to the existing MRgFUS systems, the combined robotic FUS approach offers a wide range of spatial flexibility so that highly flexible application of the US wave would be possible, for example, to avoid risk structures within the US field. The setup might help to realize new ways of patient access in MRgFUS therapy. The setup is compatible with any closed-bore MR system and does not require an especially designed patient table.

Maxillary molar derotation and distalization by using a nickel-titanium wire fabricated on a setup model

PubMed Central

Jung, Jong Moon; Wi, Young Joo; Koo, Hyun Mo; Kim, Min Ji

2017-01-01

The purpose of this article is to introduce a simple appliance that uses a setup model and a nickel-titanium (Ni-Ti) wire for correcting the mesial rotation and drift of the permanent maxillary first molar. The technique involves bonding a Ni-Ti wire to the proper position of the target tooth on a setup model, followed by the fabrication of the transfer cap for indirect bonding and its transfer to the patient's teeth. This appliance causes less discomfort and provides better oral hygiene for the patients than do conventional appliances such as the bracket, pendulum, and distal jet. The treatment time is also shorter with the new appliance than with full-fixed appliances. Moreover, the applicability of the new appliance can be expanded to many cases by using screws or splinting with adjacent teeth to improve anchorage. PMID:28670568

Comparison of different wavefront measurement setups to judge the position tolerance of intraocular lenses in a model eye

NASA Astrophysics Data System (ADS)

Traxler, Lukas; Reutterer, Bernd; Bayer, Natascha; Drauschke, Andreas

2017-04-01

To treat cataract intraocular lenses (IOLs) are used to replace the clouded human eye lens. Due to postoperative healing processes the IOL can displace within the eye, which can lead to deteriorated quality of vision. To test and characterize these effect an IOL can be embedded into a model of the humane eye. One informative measure are wavefront aberrations. In this paper three different setups, the typical double-pass configuration (DP), a single-pass (SP1) where the measured light travels in the same direction as in DP and a single-pass (SP2) with reversed direction, are investigated. All three setups correctly measure the aberrations of the eye, where SP1 is found to be the simplest to set up and align. Because of the lowest complexity it is the proposed method for wavefront measurement in model eyes.

An optimal policy for a single-vendor and a single-buyer integrated system with setup cost reduction and process-quality improvement

NASA Astrophysics Data System (ADS)

Shu, Hui; Zhou, Xideng

2014-05-01

The single-vendor single-buyer integrated production inventory system has been an object of study for a long time, but little is known about the effect of investing in reducing setup cost reduction and process-quality improvement for an integrated inventory system in which the products are sold with free minimal repair warranty. The purpose of this article is to minimise the integrated cost by optimising simultaneously the number of shipments and the shipment quantity, the setup cost, and the process quality. An efficient algorithm procedure is proposed for determining the optimal decision variables. A numerical example is presented to illustrate the results of the proposed models graphically. Sensitivity analysis of the model with respect to key parameters of the system is carried out. The paper shows that the proposed integrated model can result in significant savings in the integrated cost.

Maxillary molar derotation and distalization by using a nickel-titanium wire fabricated on a setup model.

PubMed

Jung, Jong Moon; Wi, Young Joo; Koo, Hyun Mo; Kim, Min Ji; Chun, Youn Sic

2017-07-01

The purpose of this article is to introduce a simple appliance that uses a setup model and a nickel-titanium (Ni-Ti) wire for correcting the mesial rotation and drift of the permanent maxillary first molar. The technique involves bonding a Ni-Ti wire to the proper position of the target tooth on a setup model, followed by the fabrication of the transfer cap for indirect bonding and its transfer to the patient's teeth. This appliance causes less discomfort and provides better oral hygiene for the patients than do conventional appliances such as the bracket, pendulum, and distal jet. The treatment time is also shorter with the new appliance than with full-fixed appliances. Moreover, the applicability of the new appliance can be expanded to many cases by using screws or splinting with adjacent teeth to improve anchorage.

Analytical modeling, finite-difference simulation and experimental validation of air-coupled ultrasound beam refraction and damping through timber laminates, with application to non-destructive testing.

PubMed

Sanabria, Sergio J; Furrer, Roman; Neuenschwander, Jürg; Niemz, Peter; Schütz, Philipp

2015-12-01

Reliable non-destructive testing (NDT) ultrasound systems for timber composite structures require quantitative understanding of the propagation of ultrasound beams in wood. A finite-difference time-domain (FDTD) model is described, which incorporates local anisotropy variations of stiffness, damping and density in timber elements. The propagation of pulsed air-coupled ultrasound (ACU) beams in normal and slanted incidence configurations is reproduced by direct definition of material properties (gas, solid) at each model pixel. First, the model was quantitatively validated against analytical derivations. Time-varying wavefronts in unbounded timber with curved growth rings were accurately reproduced, as well as the acoustic properties (velocity, attenuation, beam skewing) of ACU beams transmitted through timber lamellas. An experimental sound field imaging (SFI) setup was implemented at NDT frequencies (120 kHz), which for specific beam incidence positions allows spatially resolved ACU field characterization at the receiver side. The good agreement of experimental and modeled beam shifts across timber laminates allowed extrapolation of the inner propagation paths. The modeling base is an orthotropic stiffness dataset for the desired wood species. In cross-grain planes, beam skewing leads to position-dependent wave paths. They are well-described in terms of the growth ring curvature, which is obtained by visual observation of the laminate. Extraordinary refraction phenomena were observed, which lead to well-collimated quasi-shear wave coupling at grazing beam incidence angles. The anisotropic damping in cross-grain planes is satisfactorily explained in terms of the known anisotropic stiffness dataset and a constant loss tangent. The incorporation of high-resolution density maps (X-ray computed tomography) provided insight into ultrasound scattering effects in the layered growth ring structure. Finally, the combined potential of the FDTD model and the SFI setup for material property and defect inversion in anisotropic materials was demonstrated. A portable SFI demonstrator was implemented with a multi-sensor MEMs receiver array that captures and compensates for variable wave propagation paths in glued laminated timber, and improves the imaging of lamination defects. Copyright © 2015 Elsevier B.V. All rights reserved.

An economic production model for deteriorating items and time dependent demand with rework and multiple production setups

NASA Astrophysics Data System (ADS)

Uthayakumar, R.; Tharani, S.

2017-12-01

Recently, much emphasis has given to study the control and maintenance of production inventories of the deteriorating items. Rework is one of the main issues in reverse logistic and green supply chain, since it can reduce production cost and the environmental problem. Many researchers have focused on developing rework model, but few of them have developed model for deteriorating items. Due to this fact, we take up productivity and rework with deterioration as the major concern in this paper. In this paper, a production-inventory model with deteriorative items in which one cycle has n production setups and one rework setup (n, 1) policy is considered for deteriorating items with stock-dependent demand in case 1 and exponential demand in case 2. An effective iterative solution procedure is developed to achieve optimal time, so that the total cost of the system is minimized. Numerical and sensitivity analyses are discussed to examine the outcome of the proposed solution procedure presented in this research.

Simulations of the temporal and spatial resolution for a compact time-resolved electron diffractometer

NASA Astrophysics Data System (ADS)

Robinson, Matthew S.; Lane, Paul D.; Wann, Derek A.

2016-02-01

A novel compact electron gun for use in time-resolved gas electron diffraction experiments has recently been designed and commissioned. In this paper we present and discuss the extensive simulations that were performed to underpin the design in terms of the spatial and temporal qualities of the pulsed electron beam created by the ionisation of a gold photocathode using a femtosecond laser. The response of the electron pulses to a solenoid lens used to focus the electron beam has also been studied. The simulated results show that focussing the electron beam affects the overall spatial and temporal resolution of the experiment in a variety of ways, and that factors that improve the resolution of one parameter can often have a negative effect on the other. A balance must, therefore, be achieved between spatial and temporal resolution. The optimal experimental time resolution for the apparatus is predicted to be 416 fs for studies of gas-phase species, while the predicted spatial resolution of better than 2 nm-1 compares well with traditional time-averaged electron diffraction set-ups.

Efficient single-pixel multispectral imaging via non-mechanical spatio-spectral modulation.

PubMed

Li, Ziwei; Suo, Jinli; Hu, Xuemei; Deng, Chao; Fan, Jingtao; Dai, Qionghai

2017-01-27

Combining spectral imaging with compressive sensing (CS) enables efficient data acquisition by fully utilizing the intrinsic redundancies in natural images. Current compressive multispectral imagers, which are mostly based on array sensors (e.g, CCD or CMOS), suffer from limited spectral range and relatively low photon efficiency. To address these issues, this paper reports a multispectral imaging scheme with a single-pixel detector. Inspired by the spatial resolution redundancy of current spatial light modulators (SLMs) relative to the target reconstruction, we design an all-optical spectral splitting device to spatially split the light emitted from the object into several counterparts with different spectrums. Separated spectral channels are spatially modulated simultaneously with individual codes by an SLM. This no-moving-part modulation ensures a stable and fast system, and the spatial multiplexing ensures an efficient acquisition. A proof-of-concept setup is built and validated for 8-channel multispectral imaging within 420~720 nm wavelength range on both macro and micro objects, showing a potential for efficient multispectral imager in macroscopic and biomedical applications.

Joint PET-MR respiratory motion models for clinical PET motion correction

NASA Astrophysics Data System (ADS)

Manber, Richard; Thielemans, Kris; Hutton, Brian F.; Wan, Simon; McClelland, Jamie; Barnes, Anna; Arridge, Simon; Ourselin, Sébastien; Atkinson, David

2016-09-01

Patient motion due to respiration can lead to artefacts and blurring in positron emission tomography (PET) images, in addition to quantification errors. The integration of PET with magnetic resonance (MR) imaging in PET-MR scanners provides complementary clinical information, and allows the use of high spatial resolution and high contrast MR images to monitor and correct motion-corrupted PET data. In this paper we build on previous work to form a methodology for respiratory motion correction of PET data, and show it can improve PET image quality whilst having minimal impact on clinical PET-MR protocols. We introduce a joint PET-MR motion model, using only 1 min per PET bed position of simultaneously acquired PET and MR data to provide a respiratory motion correspondence model that captures inter-cycle and intra-cycle breathing variations. In the model setup, 2D multi-slice MR provides the dynamic imaging component, and PET data, via low spatial resolution framing and principal component analysis, provides the model surrogate. We evaluate different motion models (1D and 2D linear, and 1D and 2D polynomial) by computing model-fit and model-prediction errors on dynamic MR images on a data set of 45 patients. Finally we apply the motion model methodology to 5 clinical PET-MR oncology patient datasets. Qualitative PET reconstruction improvements and artefact reduction are assessed with visual analysis, and quantitative improvements are calculated using standardised uptake value (SUVpeak and SUVmax) changes in avid lesions. We demonstrate the capability of a joint PET-MR motion model to predict respiratory motion by showing significantly improved image quality of PET data acquired before the motion model data. The method can be used to incorporate motion into the reconstruction of any length of PET acquisition, with only 1 min of extra scan time, and with no external hardware required.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sentis, Manuel Lorenzo; Gable, Carl W.

Furthermore, there are many applications in science and engineering modeling where an accurate representation of a complex model geometry in the form of a mesh is important. In applications of flow and transport in subsurface porous media, this is manifest in models that must capture complex geologic stratigraphy, structure (faults, folds, erosion, deposition) and infrastructure (tunnels, boreholes, excavations). Model setup, defined as the activities of geometry definition, mesh generation (creation, optimization, modification, refine, de-refine, smooth), assigning material properties, initial conditions and boundary conditions requires specialized software tools to automate and streamline the process. In addition, some model setup tools willmore » provide more utility if they are designed to interface with and meet the needs of a particular flow and transport software suite. A control volume discretization that uses a two point flux approximation is for example most accurate when the underlying control volumes are 2D or 3D Voronoi tessellations. In this paper we will present the coupling of LaGriT, a mesh generation and model setup software suite and TOUGH2 to model subsurface flow problems and we show an example of how LaGriT can be used as a model setup tool for the generation of a Voronoi mesh for the simulation program TOUGH2. To generate the MESH file for TOUGH2 from the LaGriT output a standalone module Lagrit2Tough2 was developed, which is presented here and will be included in a future release of LaGriT. Here in this paper an alternative method to generate a Voronoi mesh for TOUGH2 with LaGriT is presented and thanks to the modular and command based structure of LaGriT this method is well suited to generating a mesh for complex models.« less

Wave setup over a Pacific Island fringing reef

NASA Astrophysics Data System (ADS)

Vetter, O.; Becker, J. M.; Merrifield, M. A.; Pequignet, A.-C.; Aucan, J.; Boc, S. J.; Pollock, C. E.

2010-12-01

Measurements obtained across a shore-attached, fringing reef on the southeast coast of the island of Guam are examined to determine the relationship between incident waves and wave-driven setup during storm and nonstorm conditions. Wave setup on the reef flat correlates well (r > 0.95) and scales near the shore as approximately 35% of the incident root mean square wave height in 8 m water depth. Waves generated by tropical storm Man-Yi result in a 1.3 m setup during the peak of the storm. Predictions based on traditional setup theory (steady state, inviscid cross-shore momentum and depth-limited wave breaking) and an idealized model of localized wave breaking at the fore reef are in agreement with the observations. The reef flat setup is used to estimate a similarity parameter at breaking that is in agreement with observations from a steeply sloping sandy beach. A weak (˜10%) increase in setup is observed across the reef flat during wave events. The inclusion of bottom stress in the cross-shore momentum balance may account for a portion of this signal, but this assessment is inconclusive as the reef flat currents in some cases are in the wrong direction to account for the increase. An independent check of fringing reef setup dynamics is carried out for measurements at the neighboring island of Saipan with good agreement.

Crosstalk in an FDM Laboratory Setup and the Athena X-IFU End-to-End Simulator

NASA Astrophysics Data System (ADS)

den Hartog, R.; Kirsch, C.; de Vries, C.; Akamatsu, H.; Dauser, T.; Peille, P.; Cucchetti, E.; Jackson, B.; Bandler, S.; Smith, S.; Wilms, J.

2018-04-01

The impact of various crosstalk mechanisms on the performance of the Athena X-IFU instrument has been assessed with detailed end-to-end simulations. For the crosstalk in the electrical circuit, a detailed model has been developed. In this contribution, we test this model against measurements made with an FDM laboratory setup and discuss the assumption of deterministic crosstalk in the context of the weak link effect in the detectors. We conclude that crosstalk levels predicted by the model are conservative with respect to the observed levels.

Including Finite Surface Span Effects in Empirical Jet-Surface Interaction Noise Models

NASA Technical Reports Server (NTRS)

Brown, Clifford A.

2016-01-01

The effect of finite span on the jet-surface interaction noise source and the jet mixing noise shielding and reflection effects is considered using recently acquired experimental data. First, the experimental setup and resulting data are presented with particular attention to the role of surface span on far-field noise. These effects are then included in existing empirical models that have previously assumed that all surfaces are semi-infinite. This extended abstract briefly describes the experimental setup and data leaving the empirical modeling aspects for the final paper.

Quantitative comparisons of analogue models of brittle wedge dynamics

NASA Astrophysics Data System (ADS)

Schreurs, Guido

2010-05-01

Analogue model experiments are widely used to gain insights into the evolution of geological structures. In this study, we present a direct comparison of experimental results of 14 analogue modelling laboratories using prescribed set-ups. A quantitative analysis of the results will document the variability among models and will allow an appraisal of reproducibility and limits of interpretation. This has direct implications for comparisons between structures in analogue models and natural field examples. All laboratories used the same frictional analogue materials (quartz and corundum sand) and prescribed model-building techniques (sieving and levelling). Although each laboratory used its own experimental apparatus, the same type of self-adhesive foil was used to cover the base and all the walls of the experimental apparatus in order to guarantee identical boundary conditions (i.e. identical shear stresses at the base and walls). Three experimental set-ups using only brittle frictional materials were examined. In each of the three set-ups the model was shortened by a vertical wall, which moved with respect to the fixed base and the three remaining sidewalls. The minimum width of the model (dimension parallel to mobile wall) was also prescribed. In the first experimental set-up, a quartz sand wedge with a surface slope of ˜20° was pushed by a mobile wall. All models conformed to the critical taper theory, maintained a stable surface slope and did not show internal deformation. In the next two experimental set-ups, a horizontal sand pack consisting of alternating quartz sand and corundum sand layers was shortened from one side by the mobile wall. In one of the set-ups a thin rigid sheet covered part of the model base and was attached to the mobile wall (i.e. a basal velocity discontinuity distant from the mobile wall). In the other set-up a basal rigid sheet was absent and the basal velocity discontinuity was located at the mobile wall. In both types of experiments, models accommodated initial shortening by a forward- and a backward-verging thrust. Further shortening was taken up by in-sequence formation of forward-verging thrusts. In all experiments, boundary stresses created significant drag of structures along the sidewalls. We therefore compared the surface slope and the location, dip angle and spacing of thrusts in sections through the central part of the model. All models show very similar cross-sectional evolutions demonstrating reproducibility of first-order experimental observations. Nevertheless, there are significant along-strike variations of structures in map view highlighting the limits of interpretations of analogue model results. These variations may be related to the human factor, differences in model width and/or differences in laboratory temperature and especially humidity affecting the mechanical properties of the granular materials. GeoMod2008 Analogue Team: Susanne Buiter, Caroline Burberry, Jean-Paul Callot, Cristian Cavozzi, Mariano Cerca, Ernesto Cristallini, Alexander Cruden, Jian-Hong Chen, Leonardo Cruz, Jean-Marc Daniel, Victor H. Garcia, Caroline Gomes, Céline Grall, Cecilia Guzmán, Triyani Nur Hidayah, George Hilley, Chia-Yu Lu, Matthias Klinkmüller, Hemin Koyi, Jenny Macauley, Bertrand Maillot, Catherine Meriaux, Faramarz Nilfouroushan, Chang-Chih Pan, Daniel Pillot, Rodrigo Portillo, Matthias Rosenau, Wouter P. Schellart, Roy Schlische, Andy Take, Bruno Vendeville, Matteo Vettori, M. Vergnaud, Shih-Hsien Wang, Martha Withjack, Daniel Yagupsky, Yasuhiro Yamada

Integration of prior knowledge into dense image matching for video surveillance

NASA Astrophysics Data System (ADS)

Menze, M.; Heipke, C.

2014-08-01

Three-dimensional information from dense image matching is a valuable input for a broad range of vision applications. While reliable approaches exist for dedicated stereo setups they do not easily generalize to more challenging camera configurations. In the context of video surveillance the typically large spatial extent of the region of interest and repetitive structures in the scene render the application of dense image matching a challenging task. In this paper we present an approach that derives strong prior knowledge from a planar approximation of the scene. This information is integrated into a graph-cut based image matching framework that treats the assignment of optimal disparity values as a labelling task. Introducing the planar prior heavily reduces ambiguities together with the search space and increases computational efficiency. The results provide a proof of concept of the proposed approach. It allows the reconstruction of dense point clouds in more general surveillance camera setups with wider stereo baselines.

Spatial characterization of Bessel-like beams for strong-field physics.

PubMed

Summers, Adam M; Yu, Xiaoming; Wang, Xinya; Raoul, Maxime; Nelson, Josh; Todd, Daniel; Zigo, Stefan; Lei, Shuting; Trallero-Herrero, Carlos A

2017-02-06

We present a compact, simple design for the generation and tuning of both the spot size and effective focal length of Bessel-like beams. In particular, this setup provides an important tool for the use of Bessel-like beams with high-power, femtosecond laser systems. Using a shallow angle axicon in conjunction with a spherical lens, we show that it is possible to focus Bessel-like modes to comparable focal spot sizes to sharp axicons while maintaining a long effective focal length. The resulting focal profiles are characterized in detail using an accurate high dynamic range imaging technique. Quantitatively, we introduce a metric (R_0.8) which defines the spot-size containing 80% of the total energy. Our setup overcomes the typical compromise between long working distances and small spot sizes. This is particularly relevant for strong-field physics where most experiments must operate in vacuum.

Sequential x-ray diffraction topography at 1-BM x-ray optics testing beamline at the advanced photon source

DOE Office of Scientific and Technical Information (OSTI.GOV)

Stoupin, Stanislav, E-mail: sstoupin@aps.anl.gov; Shvyd’ko, Yuri; Trakhtenberg, Emil

2016-07-27

We report progress on implementation and commissioning of sequential X-ray diffraction topography at 1-BM Optics Testing Beamline of the Advanced Photon Source to accommodate growing needs of strain characterization in diffractive crystal optics and other semiconductor single crystals. The setup enables evaluation of strain in single crystals in the nearly-nondispersive double-crystal geometry. Si asymmetric collimator crystals of different crystallographic orientations were designed, fabricated and characterized using in-house capabilities. Imaging the exit beam using digital area detectors permits rapid sequential acquisition of X-ray topographs at different angular positions on the rocking curve of a crystal under investigation. Results on sensitivity andmore » spatial resolution are reported based on experiments with high-quality Si and diamond crystals. The new setup complements laboratory-based X-ray topography capabilities of the Optics group at the Advanced Photon Source.« less

Imaging, photophysical properties and DFT calculations of manganese blue (barium manganate(VI) sulphate)--a modern pigment.

PubMed

Accorsi, Gianluca; Verri, Giovanni; Acocella, Angela; Zerbetto, Francesco; Lerario, Giovanni; Gigli, Giuseppe; Saunders, David; Billinge, Rachel

2014-12-18

Manganese blue is a synthetic barium manganate(VI) sulphate compound that was produced from 1935 to the 1990s and was used both as a blue pigment in works of art and by conservators in the restoration of paintings. The photophysical properties of the compound are described as well as the setup needed to record the spatial distribution of the pigment in works of art.

Predicting field-scale dispersion under realistic conditions with the polar Markovian velocity process model

NASA Astrophysics Data System (ADS)

Dünser, Simon; Meyer, Daniel W.

2016-06-01

In most groundwater aquifers, dispersion of tracers is dominated by flow-field inhomogeneities resulting from the underlying heterogeneous conductivity or transmissivity field. This effect is referred to as macrodispersion. Since in practice, besides a few point measurements the complete conductivity field is virtually never available, a probabilistic treatment is needed. To quantify the uncertainty in tracer concentrations from a given geostatistical model for the conductivity, Monte Carlo (MC) simulation is typically used. To avoid the excessive computational costs of MC, the polar Markovian velocity process (PMVP) model was recently introduced delivering predictions at about three orders of magnitude smaller computing times. In artificial test cases, the PMVP model has provided good results in comparison with MC. In this study, we further validate the model in a more challenging and realistic setup. The setup considered is derived from the well-known benchmark macrodispersion experiment (MADE), which is highly heterogeneous and non-stationary with a large number of unevenly scattered conductivity measurements. Validations were done against reference MC and good overall agreement was found. Moreover, simulations of a simplified setup with a single measurement were conducted in order to reassess the model's most fundamental assumptions and to provide guidance for model improvements.

GOW2.0: A global wave hindcast of high resolution

NASA Astrophysics Data System (ADS)

Menendez, Melisa; Perez, Jorge; Losada, Inigo

2016-04-01

The information provided by reconstructions of historical wind generated waves is of paramount importance for a variety of coastal and offshore purposes (e.g. risk assessment, design of costal structures and coastal management). Here, a new global wave hindcast (GOW2.0) is presented. This hindcast is an update of GOW1.0 (Reguero et al. 2012) motivated by the emergence of new settings and atmospheric information from reanalysis during recent years. GOW2.0 is based on version 4.18 of WaveWatch III numerical model (Tolman, 2014). Main features of the model set-up are the analysis and selection of recent source terms concerning wave generation and dissipation (Ardhuin et al. 2010, Zieger et al., 2015) and the implementation of obstruction grids to improve the modeling of wave shadowing effects in line with the approach described in Chawla and Tolman (2007). This has been complemented by a multigrid system and the use of the hourly wind and ice coverage from the Climate Forecast System Reanalysis, CFSR (30km spatial resolution approximately). The multigrid scheme consists of a series of "two-way" nested domains covering the whole ocean basins at a 0.5° spatial resolution and continental shelfs worldwide at a 0.25° spatial resolution. In addition, a technique to reconstruct wave 3D spectra for any grid-point is implemented from spectral partitioning information. A validation analysis of GOW2.0 outcomes has been undertaken considering wave spectral information from surface buoy stations and multi-mission satellite data for a spatial validation. GOW2.0 shows a substantial improvement over its predecessor for all the analyzed variables. In summary, GOW2.0 reconstructs historical wave spectral data and climate information from 1979 to present at hourly resolution providing higher spatial resolution over regions where local generated wind seas, bimodal-spectral behaviour and relevant swell transformations across the continental shelf are important. Ardhuin F, Rogers E, Babanin AV, et al (2010). Semiempirical Dissipation Source Functions for Ocean Waves. Part I: Definition, Calibration, and Validation. J Phys Oceanogr. 2010;40(9):1917-1941. doi:10.1175/2010JPO4324.1. Chawla A, Tolman HL. Obstruction grids for spectral wave models. Ocean Model. 2008;22(1-2):12-25. doi:10.1016/j.ocemod.2008.01.003. Reguero BG, Menendez M, Mendez FJ, Minguez R, Losada IJ (2012). A Global Ocean Wave (GOW) calibrated reanalysis from 1948 onwards. Coastal Engineering, 65, 38-55. Tolman HL (2014). User manual and system documentation of WAVEWATCH III version 4.18. NOAA / NWS / NCEP / MMAB Tech Note. Zieger S, Babanin AV, Rogers WE, Young IR (2015). Observation-based source terms in the third-generation wave model WAVEWATCH. Ocean Modelling, 96, 2-25.

Spatially distributed environmental fate modelling of terbuthylazine in a mesoscale agricultural catchment using passive sampler data

NASA Astrophysics Data System (ADS)

Gassmann, Matthias; Farlin, Julien; Gallé, Tom

2017-04-01

Agricultural application of herbicides often leads to significant herbicide losses to receiving rivers. The impact of agricultural practices on water pollution can be assessed by process-based reactive transport modelling using catchment scale models. Prior to investigations of management practices, these models have to be calibrated using sampling data. However, most previous studies only used concentrations at the catchment outlet for model calibration and validation. Thus, even if the applied model is spatially distributed, predicted spatial differences of pesticide loss cannot be directly compared to observations. In this study, we applied the spatially distributed reactive transport model Zin-AgriTra in the mesoscale (78 km2) catchment of the Wark River in Luxembourg in order to simulate concentrations of terbuthylazine in river water. In contrast to former studies, we used six sampling points, equipped with passive samplers, for pesticide model validation. Three samplers were located in the main channel of the river and three in smaller tributaries. At each sampling point, event mean concentration of six events from May to July 2011 were calculated by subtraction of baseflow-mass from total collected mass assuming time-proportional uptake by passive samplers. Continuous discharge measurements and high-resolution autosampling during events allowed for accurate load calculations at the outlet. Detailed information about maize cultivation in the catchment and nation-wide terbuthylazine application statistics (341 g/ha in the 3rd week of May) were used for a definition of the pesticide input function of the model. The hydrological model was manually calibrated to fit baseflow and spring/summer events. Substance fluxes were calibrated using a Latin Hypercube of physico-chemical substance characteristics as provided by the literature: surface soil half-lives of 10-35 d, Freundlich KOC of 150-330 ml/g, Freundlich n of 0.9 - 1 and adsorption/desorption kinetics of 20 - 80 1/d. Daily discharge simulations resulted in high Kling-Gupta efficiencies (KGE) for the calibration and the validation period (KGE > 0.70). Overall, terbuthylazine concentrations could be successfully reproduced with maximum KGE > 0.90 for all concentrations in the catchment and loads at the outlet. The generally lower concentrations in the tributaries that were measured by the passive samplers and the declining concentrations towards the outlet in the main channel could be reproduced by the model. The model simulated overland flow to be the major source of terbuthylazine in the main channel and soil water fluxes to be the most important pathways in the tributaries. Simulation results suggest that less than 0.01 % of applied terbuthylazine mass was exported to the river in the Wark catchment and less than 5 % of the exported mass was originating from the sampled tributaries. In addition to calibration of substance characteristics, passive sampler data was helpful in model setup of application field connectivity. Since the spatial resolution of the model was 50m, input maps sometimes showed a field to be directly connected to a river, whereas it was in reality separated from it by a 30m wide field or forest strip. Such misconfigurations leading to high concentrations in tributaries could easily be identified by comparing model results to passive sampler data. In conclusion, assigning different transport pathways of terbuthylazine to the rivers by model simulations was helped by using the additional spatial information on pesticide concentrations gained from passive samplers.

Global terrestrial carbon and nitrogen cycling insensitive to estimates of biological N fixation

NASA Astrophysics Data System (ADS)

Steinkamp, J.; Weber, B.; Werner, C.; Hickler, T.

2015-12-01

Dinitrogen (N2) is the most abundant molecule in the atmosphere and incorporated in other molecules an essential nutrient for life on earth. However, only few natural processes can initiate a reaction of N2. These natural processes are fire, lightning and biological nitrogen fixation (BNF) with BNF being the largest source. In the course of the last century humans have outperformed the natural processes of nitrogen fixation by the production of fertilizer. Industrial and other human emission of reactive nitrogen, as well as fire and lightning lead to a deposition of 63 Tg (N) per year. This is twice the amount of BNF estimated by the default setup of the dynamic global vegetation model LPJ-GUESS (30 Tg), which is a conservative approach. We use different methods and parameterizations for BNF in LPJ-GUESS: 1.) varying total annual amount; 2.) annual evenly distributed and daily calculated fixation rates; 3.) an improved dataset of BNF by cryptogamic covers (free-living N-fixers). With this setup BNF is ranging from 30 Tg to 60 Tg. We assess the impact of BNF on carbon storage and grand primary production (GPP) of the natural vegetation. These results are compared to and evaluated against available independent datasets. We do not see major differences in the productivity and carbon stocks with these BNF estimates, suggesting that natural vegetation is insensitive to BNF on a global scale and the vegetation can compensate for the different nitrogen availabilities. Current deposition of nitrogen compounds and internal cycling through mineralization and uptake is sufficient for natural vegetation productivity. However, due to the coarse model grid and spatial heterogeneity in the real world this conclusion does not exclude the existence of habitats constrained by BNF.

High resolution Cerenkov light imaging of induced positron distribution in proton therapy

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yamamoto, Seiichi, E-mail: s-yama@met.nagoya-u.ac.jp; Fujii, Kento; Morishita, Yuki

2014-11-01

Purpose: In proton therapy, imaging of the positron distribution produced by fragmentation during or soon after proton irradiation is a useful method to monitor the proton range. Although positron emission tomography (PET) is typically used for this imaging, its spatial resolution is limited. Cerenkov light imaging is a new molecular imaging technology that detects the visible photons that are produced from high-speed electrons using a high sensitivity optical camera. Because its inherent spatial resolution is much higher than PET, the authors can measure more precise information of the proton-induced positron distribution with Cerenkov light imaging technology. For this purpose, theymore » conducted Cerenkov light imaging of induced positron distribution in proton therapy. Methods: First, the authors evaluated the spatial resolution of our Cerenkov light imaging system with a {sup 22}Na point source for the actual imaging setup. Then the transparent acrylic phantoms (100 × 100 × 100 mm{sup 3}) were irradiated with two different proton energies using a spot scanning proton therapy system. Cerenkov light imaging of each phantom was conducted using a high sensitivity electron multiplied charge coupled device (EM-CCD) camera. Results: The Cerenkov light’s spatial resolution for the setup was 0.76 ± 0.6 mm FWHM. They obtained high resolution Cerenkov light images of the positron distributions in the phantoms for two different proton energies and made fused images of the reference images and the Cerenkov light images. The depths of the positron distribution in the phantoms from the Cerenkov light images were almost identical to the simulation results. The decay curves derived from the region-of-interests (ROIs) set on the Cerenkov light images revealed that Cerenkov light images can be used for estimating the half-life of the radionuclide components of positrons. Conclusions: High resolution Cerenkov light imaging of proton-induced positron distribution was possible. The authors conclude that Cerenkov light imaging of proton-induced positron is promising for proton therapy.« less

Numerical investigation of a scalable setup for efficient terahertz generation using a segmented tilted-pulse-front excitation.

PubMed

Pálfalvi, László; Tóth, György; Tokodi, Levente; Márton, Zsuzsanna; Fülöp, József András; Almási, Gábor; Hebling, János

2017-11-27

A hybrid-type terahertz pulse source is proposed for high energy terahertz pulse generation. It is the combination of the conventional tilted-pulse-front setup and a transmission stair-step echelon-faced nonlinear crystal with a period falling in the hundred-micrometer range. The most important advantage of the setup is the possibility of using plane parallel nonlinear optical crystal for producing good-quality, symmetric terahertz beam. Another advantage of the proposed setup is the significant reduction of imaging errors, which is important in the case of wide pump beams that are used in high energy experiments. A one dimensional model was developed for determining the terahertz generation efficiency, and it was used for quantitative comparison between the proposed new hybrid setup and previously introduced terahertz sources. With lithium niobate nonlinear material, calculations predict an approximately ten-fold increase in the efficiency of the presently described hybrid terahertz pulse source with respect to that of the earlier proposed setup, which utilizes a reflective stair-step echelon and a prism shaped nonlinear optical crystal. By using pump pulses of 50 mJ pulse energy, 500 fs pulse length and 8 mm beam spot radius, approximately 1% conversion efficiency and 0.5 mJ terahertz pulse energy can be reached with the newly proposed setup.

High dimensional linear regression models under long memory dependence and measurement error

NASA Astrophysics Data System (ADS)

Kaul, Abhishek

This dissertation consists of three chapters. The first chapter introduces the models under consideration and motivates problems of interest. A brief literature review is also provided in this chapter. The second chapter investigates the properties of Lasso under long range dependent model errors. Lasso is a computationally efficient approach to model selection and estimation, and its properties are well studied when the regression errors are independent and identically distributed. We study the case, where the regression errors form a long memory moving average process. We establish a finite sample oracle inequality for the Lasso solution. We then show the asymptotic sign consistency in this setup. These results are established in the high dimensional setup (p> n) where p can be increasing exponentially with n. Finally, we show the consistency, n½ --d-consistency of Lasso, along with the oracle property of adaptive Lasso, in the case where p is fixed. Here d is the memory parameter of the stationary error sequence. The performance of Lasso is also analysed in the present setup with a simulation study. The third chapter proposes and investigates the properties of a penalized quantile based estimator for measurement error models. Standard formulations of prediction problems in high dimension regression models assume the availability of fully observed covariates and sub-Gaussian and homogeneous model errors. This makes these methods inapplicable to measurement errors models where covariates are unobservable and observations are possibly non sub-Gaussian and heterogeneous. We propose weighted penalized corrected quantile estimators for the regression parameter vector in linear regression models with additive measurement errors, where unobservable covariates are nonrandom. The proposed estimators forgo the need for the above mentioned model assumptions. We study these estimators in both the fixed dimension and high dimensional sparse setups, in the latter setup, the dimensionality can grow exponentially with the sample size. In the fixed dimensional setting we provide the oracle properties associated with the proposed estimators. In the high dimensional setting, we provide bounds for the statistical error associated with the estimation, that hold with asymptotic probability 1, thereby providing the ℓ1-consistency of the proposed estimator. We also establish the model selection consistency in terms of the correctly estimated zero components of the parameter vector. A simulation study that investigates the finite sample accuracy of the proposed estimator is also included in this chapter.

Computational and experimental single cell biology techniques for the definition of cell type heterogeneity, interplay and intracellular dynamics.

PubMed

de Vargas Roditi, Laura; Claassen, Manfred

2015-08-01

Novel technological developments enable single cell population profiling with respect to their spatial and molecular setup. These include single cell sequencing, flow cytometry and multiparametric imaging approaches and open unprecedented possibilities to learn about the heterogeneity, dynamics and interplay of the different cell types which constitute tissues and multicellular organisms. Statistical and dynamic systems theory approaches have been applied to quantitatively describe a variety of cellular processes, such as transcription and cell signaling. Machine learning approaches have been developed to define cell types, their mutual relationships, and differentiation hierarchies shaping heterogeneous cell populations, yielding insights into topics such as, for example, immune cell differentiation and tumor cell type composition. This combination of experimental and computational advances has opened perspectives towards learning predictive multi-scale models of heterogeneous cell populations. Copyright © 2014 Elsevier Ltd. All rights reserved.

Multifunctional-layered materials for creating membrane-restricted nanodomains and nanoscale imaging

NASA Astrophysics Data System (ADS)

Srinivasan, P.

2016-01-01

Experimental platform that allows precise spatial positioning of biomolecules with an exquisite control at nanometer length scales is a valuable tool to study the molecular mechanisms of membrane bound signaling. Using micromachined thin film gold (Au) in layered architecture, it is possible to add both optical and biochemical functionalities in in vitro. Towards this goal, here, I show that docking of complementary DNA tethered giant phospholiposomes on Au surface can create membrane-restricted nanodomains. These nanodomains are critical features to dissect molecular choreography of membrane signaling complexes. The excited surface plasmon resonance modes of Au allow label-free imaging at diffraction-limited resolution of stably docked DNA tethered phospholiposomes, and lipid-detergent bicelle structures. Such multifunctional building block enables realizing rigorously controlled in vitro set-up to model membrane anchored biological signaling, besides serving as an optical tool for nanoscale imaging.

Compact energy dispersive X-ray microdiffractometer for diagnosis of neoplastic tissues

NASA Astrophysics Data System (ADS)

Sosa, C.; Malezan, A.; Poletti, M. E.; Perez, R. D.

2017-08-01

An energy dispersive X-ray microdiffractometer with capillary optics has been developed for characterizing breast cancer. The employment of low divergence capillary optics helps to reduce the setup size to a few centimeters, while providing a lateral spatial resolution of 100 μm. The system angular calibration and momentum transfer resolution were assessed by a detailed study of a polycrystalline reference material. The performance of the system was tested by means of the analysis of tissue-equivalent samples previously characterized by conventional X-ray diffraction. In addition, a simplified correction model for an appropriate comparison of the diffraction spectra was developed and validated. Finally, the system was employed to evaluate normal and neoplastic human breast samples, in order to determine their X-ray scatter signatures. The initial results indicate that the use of this compact energy dispersive X-ray microdiffractometer combined with a simplified correction procedure is able to provide additional information to breast cancer diagnosis.

Imaging the beating heart in the mouse using intravital microscopy techniques

PubMed Central

Vinegoni, Claudio; Aguirre, Aaron D; Lee, Sungon; Weissleder, Ralph

2017-01-01

Real-time microscopic imaging of moving organs at single-cell resolution represents a major challenge in studying complex biology in living systems. Motion of the tissue from the cardiac and respiratory cycles severely limits intravital microscopy by compromising ultimate spatial and temporal imaging resolution. However, significant recent advances have enabled single-cell resolution imaging to be achieved in vivo. In this protocol, we describe experimental procedures for intravital microscopy based on a combination of thoracic surgery, tissue stabilizers and acquisition gating methods, which enable imaging at the single-cell level in the beating heart in the mouse. Setup of the model is typically completed in 1 h, which allows 2 h or more of continuous cardiac imaging. This protocol can be readily adapted for the imaging of other moving organs, and it will therefore broadly facilitate in vivo high-resolution microscopy studies. PMID:26492138

Experimental violation of local causality in a quantum network.

PubMed

Carvacho, Gonzalo; Andreoli, Francesco; Santodonato, Luca; Bentivegna, Marco; Chaves, Rafael; Sciarrino, Fabio

2017-03-16

Bell's theorem plays a crucial role in quantum information processing and thus several experimental investigations of Bell inequalities violations have been carried out over the years. Despite their fundamental relevance, however, previous experiments did not consider an ingredient of relevance for quantum networks: the fact that correlations between distant parties are mediated by several, typically independent sources. Here, using a photonic setup, we investigate a quantum network consisting of three spatially separated nodes whose correlations are mediated by two distinct sources. This scenario allows for the emergence of the so-called non-bilocal correlations, incompatible with any local model involving two independent hidden variables. We experimentally witness the emergence of this kind of quantum correlations by violating a Bell-like inequality under the fair-sampling assumption. Our results provide a proof-of-principle experiment of generalizations of Bell's theorem for networks, which could represent a potential resource for quantum communication protocols.

Exciton dynamics at a single dislocation in GaN probed by picosecond time-resolved cathodoluminescence

DOE Office of Scientific and Technical Information (OSTI.GOV)

Liu, W., E-mail: we.liu@epfl.ch, E-mail: gwenole.jacopin@epfl.ch; Carlin, J.-F.; Grandjean, N.

2016-07-25

We investigate the dynamics of donor bound excitons (D°X{sub A}) at T = 10 K around an isolated single edge dislocation in homoepitaxial GaN, using a picosecond time-resolved cathodoluminescence (TR-CL) setup with high temporal and spatial resolutions. An ∼ 1.3 meV dipole-like energy shift of D°X{sub A} is observed around the dislocation, induced by the local strain fields. By simultaneously recording the variations of both the exciton lifetime and the CL intensity across the dislocation, we directly assess the dynamics of excitons around the defect. Our observations are well reproduced by a diffusion model. It allows us to deduce an exciton diffusion length ofmore » ∼24 nm as well as an effective area of the dislocation with a radius of ∼95 nm, where the recombination can be regarded as entirely non-radiative.« less

Online games: a novel approach to explore how partial information influences human random searches

NASA Astrophysics Data System (ADS)

Martínez-García, Ricardo; Calabrese, Justin M.; López, Cristóbal

2017-01-01

Many natural processes rely on optimizing the success ratio of a search process. We use an experimental setup consisting of a simple online game in which players have to find a target hidden on a board, to investigate how the rounds are influenced by the detection of cues. We focus on the search duration and the statistics of the trajectories traced on the board. The experimental data are explained by a family of random-walk-based models and probabilistic analytical approximations. If no initial information is given to the players, the search is optimized for cues that cover an intermediate spatial scale. In addition, initial information about the extension of the cues results, in general, in faster searches. Finally, strategies used by informed players turn into non-stationary processes in which the length of e ach displacement evolves to show a well-defined characteristic scale that is not found in non-informed searches.

Scattering of charged particles on two spatially separated time-periodic optical fields

NASA Astrophysics Data System (ADS)

Szabó, Lóránt Zs.; Benedict, Mihály G.; Földi, Péter

2017-12-01

We consider a monoenergetic beam of moving charged particles interacting with two separated oscillating electric fields. Time-periodic linear potential is assumed to model the light-particle interaction using a nonrelativistic, quantum mechanical description based on Gordon-Volkov states. Applying Floquet theory, we calculate transmission probabilities as a function of the laser field parameters. The transmission resonances in this Ramsey-like setup are interpreted as if they originated from a corresponding static double-potential barrier with heights equal to the ponderomotive potential resulting from the oscillating field. Due to the opening of new "Floquet channels," the resonances are repeated at input energies when the corresponding frequency is shifted by an integer multiple of the exciting frequency. These narrow resonances can be used as precise energy filters. The fine structure of the transmission spectra is determined by the phase difference between the two oscillating light fields, allowing for the optical control of the transmission.

Natural Curvature as Effective Confinement in Elastic Sheets

NASA Astrophysics Data System (ADS)

Albarran, Octavio; Katifori, Eleni; Goehring, Lucas

The wrinkling and folding transitions of thin elastic sheets have been extensively studied in the last decade. The exchange of energy from stretching to bending acts as a paradigm for a wide range of elastic instabilities, including the wrinkling of the gut, and the crinkling of leaves. In two dimensions this type of problem is typically considered by the model of an Euler-elastica in compressive confinement. We show that, even without any external forces, an elastic surface supported by a fluid can bend and wrinkle when it acquires a non-zero natural curvature. Locally, we will demonstrate how a preferential curvature can be related to an effective compression, and hence a confining force that can vary spatially. This suggests a simple experimental setup, where we have characterised a variety of wrinkle patterns that can be generated for different mechanical properties and natural curvatures.

Experimental violation of local causality in a quantum network

PubMed Central

Carvacho, Gonzalo; Andreoli, Francesco; Santodonato, Luca; Bentivegna, Marco; Chaves, Rafael; Sciarrino, Fabio

2017-01-01

Bell's theorem plays a crucial role in quantum information processing and thus several experimental investigations of Bell inequalities violations have been carried out over the years. Despite their fundamental relevance, however, previous experiments did not consider an ingredient of relevance for quantum networks: the fact that correlations between distant parties are mediated by several, typically independent sources. Here, using a photonic setup, we investigate a quantum network consisting of three spatially separated nodes whose correlations are mediated by two distinct sources. This scenario allows for the emergence of the so-called non-bilocal correlations, incompatible with any local model involving two independent hidden variables. We experimentally witness the emergence of this kind of quantum correlations by violating a Bell-like inequality under the fair-sampling assumption. Our results provide a proof-of-principle experiment of generalizations of Bell's theorem for networks, which could represent a potential resource for quantum communication protocols. PMID:28300068

Open-loop simulations of atmospheric turbulence using the AdAPS interface

NASA Astrophysics Data System (ADS)

Widiker, Jeffrey J.; Magee, Eric P.

2005-08-01

We present and analyze experimental results of lab-based open-loop turbulence simulation utilizing the Adaptive Aberrating Phase Screen Interface developed by ATK Mission Research, which incorporates a 2-D spatial light modulator manufactured by Boulder Nonlinear Systems. These simulations demonstrate the effectiveness of a SLM to simulate various atmospheric turbulence scenarios in a laboratory setting without altering the optical setup. This effectiveness is shown using several figures of merit including: long-term Strehl ratio, time-dependant mean-tilt analysis, and beam break-up geometry. The scenarios examined here range from relatively weak (D/ro = 0.167) to quite strong (D/ro = 10) turbulence effects modeled using a single phase-screen placed at the pupil of a Fourier Transforming lens. While very strong turbulence scenarios result long-term Strehl ratios higher than expected, the SLM provided an accurate simulation of atmospheric effects for conventional phase-screen strengths.

Experimental violation of local causality in a quantum network

NASA Astrophysics Data System (ADS)

Carvacho, Gonzalo; Andreoli, Francesco; Santodonato, Luca; Bentivegna, Marco; Chaves, Rafael; Sciarrino, Fabio

2017-03-01

Bell's theorem plays a crucial role in quantum information processing and thus several experimental investigations of Bell inequalities violations have been carried out over the years. Despite their fundamental relevance, however, previous experiments did not consider an ingredient of relevance for quantum networks: the fact that correlations between distant parties are mediated by several, typically independent sources. Here, using a photonic setup, we investigate a quantum network consisting of three spatially separated nodes whose correlations are mediated by two distinct sources. This scenario allows for the emergence of the so-called non-bilocal correlations, incompatible with any local model involving two independent hidden variables. We experimentally witness the emergence of this kind of quantum correlations by violating a Bell-like inequality under the fair-sampling assumption. Our results provide a proof-of-principle experiment of generalizations of Bell's theorem for networks, which could represent a potential resource for quantum communication protocols.

Online games: a novel approach to explore how partial information influences human random searches.

PubMed

Martínez-García, Ricardo; Calabrese, Justin M; López, Cristóbal

2017-01-06

Many natural processes rely on optimizing the success ratio of a search process. We use an experimental setup consisting of a simple online game in which players have to find a target hidden on a board, to investigate how the rounds are influenced by the detection of cues. We focus on the search duration and the statistics of the trajectories traced on the board. The experimental data are explained by a family of random-walk-based models and probabilistic analytical approximations. If no initial information is given to the players, the search is optimized for cues that cover an intermediate spatial scale. In addition, initial information about the extension of the cues results, in general, in faster searches. Finally, strategies used by informed players turn into non-stationary processes in which the length of e ach displacement evolves to show a well-defined characteristic scale that is not found in non-informed searches.

Environmental feedback drives cooperation in spatial social dilemmas

NASA Astrophysics Data System (ADS)

Szolnoki, Attila; Chen, Xiaojie

2017-12-01

Exploiting others is beneficial individually but it could also be detrimental globally. The reverse is also true: a higher cooperation level may change the environment in a way that is beneficial for all competitors. To explore the possible consequence of this feedback we consider a coevolutionary model where the local cooperation level determines the payoff values of the applied prisoner's dilemma game. We observe that the coevolutionary rule provides a significantly higher cooperation level comparing to the traditional setup independently of the topology of the applied interaction graph. Interestingly, this cooperation supporting mechanism offers lonely defectors a high surviving chance for a long period hence the relaxation to the final cooperating state happens logarithmically slow. As a consequence, the extension of the traditional evolutionary game by considering interactions with the environment provides a good opportunity for cooperators, but their reward may arrive with some delay.

Research on monocentric model of urbanization by agent-based simulation

NASA Astrophysics Data System (ADS)

Xue, Ling; Yang, Kaizhong

2008-10-01

Over the past years, GIS have been widely used for modeling urbanization from a variety of perspectives such as digital terrain representation and overlay analysis using cell-based data platform. Similarly, simulation of urban dynamics has been achieved with the use of Cellular Automata. In contrast to these approaches, agent-based simulation provides a much more powerful set of tools. This allows researchers to set up a counterpart for real environmental and urban systems in computer for experimentation and scenario analysis. This Paper basically reviews the research on the economic mechanism of urbanization and an agent-based monocentric model is setup for further understanding the urbanization process and mechanism in China. We build an endogenous growth model with dynamic interactions between spatial agglomeration and urban development by using agent-based simulation. It simulates the migration decisions of two main types of agents, namely rural and urban households between rural and urban area. The model contains multiple economic interactions that are crucial in understanding urbanization and industrial process in China. These adaptive agents can adjust their supply and demand according to the market situation by a learning algorithm. The simulation result shows this agent-based urban model is able to perform the regeneration and to produce likely-to-occur projections of reality.

Downscaling with a nested regional climate model in near-surface fields over the contiguous United States

NASA Astrophysics Data System (ADS)

Wang, Jiali; Kotamarthi, Veerabhadra R.

2014-07-01

The Weather Research and Forecasting (WRF) model is used for dynamic downscaling of 2.5-degree National Centers for Environmental Prediction-U.S. Department of Energy Reanalysis II (NCEP-R2) data for 1980-2010 at 12 km resolution over most of North America. The model's performance for surface air temperature and precipitation is evaluated by comparison with high-resolution observational data sets. The model's ability to add value is investigated by comparison with NCEP-R2 data and a 50 km regional climate simulation. The causes for major model bias are studied through additional sensitivity experiments with various model setup/integration approaches and physics representations. The WRF captures the main features of the spatial patterns and annual cycles of air temperature and precipitation over most of the contiguous United States. However, simulated air temperatures over the south central region and precipitation over the Great Plains and the Southwest have significant biases. Allowing longer spin-up time, reducing the nudging strength, or replacing the WRF Single-Moment six-class microphysics with Morrison microphysics reduces the bias over some subregions. However, replacing the Grell-Devenyi cumulus parameterization with Kain-Fritsch shows no improvement. The 12 km simulation does add value above the NCEP-R2 data and the 50 km simulation over mountainous and coastal zones.

Inhomogeneous field theory inside the arctic circle

NASA Astrophysics Data System (ADS)

Allegra, Nicolas; Dubail, Jérôme; Stéphan, Jean-Marie; Viti, Jacopo

2016-05-01

Motivated by quantum quenches in spin chains, a one-dimensional toy-model of fermionic particles evolving in imaginary-time from a domain-wall initial state is solved. The main interest of this toy-model is that it exhibits the arctic circle phenomenon, namely a spatial phase separation between a critically fluctuating region and a frozen region. Large-scale correlations inside the critical region are expressed in terms of correlators in a (euclidean) two-dimensional massless Dirac field theory. It is observed that this theory is inhomogenous: the metric is position-dependent, so it is in fact a Dirac theory in curved space. The technique used to solve the toy-model is then extended to deal with the transfer matrices of other models: dimers on the honeycomb and square lattice, and the six-vertex model at the free fermion point (Δ =0 ). In all cases, explicit expressions are given for the long-range correlations in the critical region, as well as for the underlying Dirac action. Although the setup developed here is heavily based on fermionic observables, the results can be translated into the language of height configurations and of the gaussian free field, via bosonization. Correlations close to the phase boundary and the generic appearance of Airy processes in all these models are also briefly revisited in the appendix.

Optical Performance Modeling of FUSE Telescope Mirror

NASA Technical Reports Server (NTRS)

Saha, Timo T.; Ohl, Raymond G.; Friedman, Scott D.; Moos, H. Warren

2000-01-01

We describe the Metrology Data Processor (METDAT), the Optical Surface Analysis Code (OSAC), and their application to the image evaluation of the Far Ultraviolet Spectroscopic Explorer (FUSE) mirrors. The FUSE instrument - designed and developed by the Johns Hopkins University and launched in June 1999 is an astrophysics satellite which provides high resolution spectra (lambda/Delta(lambda) = 20,000 - 25,000) in the wavelength region from 90.5 to 118.7 nm The FUSE instrument is comprised of four co-aligned, normal incidence, off-axis parabolic mirrors, four Rowland circle spectrograph channels with holographic gratings, and delay line microchannel plate detectors. The OSAC code provides a comprehensive analysis of optical system performance, including the effects of optical surface misalignments, low spatial frequency deformations described by discrete polynomial terms, mid- and high-spatial frequency deformations (surface roughness), and diffraction due to the finite size of the aperture. Both normal incidence (traditionally infrared, visible, and near ultraviolet mirror systems) and grazing incidence (x-ray mirror systems) systems can be analyzed. The code also properly accounts for reflectance losses on the mirror surfaces. Low frequency surface errors are described in OSAC by using Zernike polynomials for normal incidence mirrors and Legendre-Fourier polynomials for grazing incidence mirrors. The scatter analysis of the mirror is based on scalar scatter theory. The program accepts simple autocovariance (ACV) function models or power spectral density (PSD) models derived from mirror surface metrology data as input to the scatter calculation. The end product of the program is a user-defined pixel array containing the system Point Spread Function (PSF). The METDAT routine is used in conjunction with the OSAC program. This code reads in laboratory metrology data in a normalized format. The code then fits the data using Zernike polynomials for normal incidence systems or Legendre-Fourier polynomials for grazing incidence systems. It removes low order terms from the metrology data, calculates statistical ACV or PSD functions, and fits these data to OSAC models for the scatter analysis. In this paper we briefly describe the laboratory image testing of FUSE spare mirror performed in the near and vacuum ultraviolet at John Hopkins University and OSAC modeling of the test setup performed at NASA/GSFC. The test setup is a double-pass configuration consisting of a Hg discharge source, the FUSE off-axis parabolic mirror under test, an autocollimating flat mirror, and a tomographic imaging detector. Two additional, small fold flats are used in the optical train to accommodate the light source and the detector. The modeling is based on Zernike fitting and PSD analysis of surface metrology data measured by both the mirror vendor (Tinsley) and JHU. The results of our models agree well with the laboratory imaging data, thus validating our theoretical model. Finally, we predict the imaging performance of FUSE mirrors in their flight configuration at far-ultraviolet wavelengths.

Consistent Parameter and Transfer Function Estimation using Context Free Grammars

NASA Astrophysics Data System (ADS)

Klotz, Daniel; Herrnegger, Mathew; Schulz, Karsten

2017-04-01

This contribution presents a method for the inference of transfer functions for rainfall-runoff models. Here, transfer functions are defined as parametrized (functional) relationships between a set of spatial predictors (e.g. elevation, slope or soil texture) and model parameters. They are ultimately used for estimation of consistent, spatially distributed model parameters from a limited amount of lumped global parameters. Additionally, they provide a straightforward method for parameter extrapolation from one set of basins to another and can even be used to derive parameterizations for multi-scale models [see: Samaniego et al., 2010]. Yet, currently an actual knowledge of the transfer functions is often implicitly assumed. As a matter of fact, for most cases these hypothesized transfer functions can rarely be measured and often remain unknown. Therefore, this contribution presents a general method for the concurrent estimation of the structure of transfer functions and their respective (global) parameters. Note, that by consequence an estimation of the distributed parameters of the rainfall-runoff model is also undertaken. The method combines two steps to achieve this. The first generates different possible transfer functions. The second then estimates the respective global transfer function parameters. The structural estimation of the transfer functions is based on the context free grammar concept. Chomsky first introduced context free grammars in linguistics [Chomsky, 1956]. Since then, they have been widely applied in computer science. But, to the knowledge of the authors, they have so far not been used in hydrology. Therefore, the contribution gives an introduction to context free grammars and shows how they can be constructed and used for the structural inference of transfer functions. This is enabled by new methods from evolutionary computation, such as grammatical evolution [O'Neill, 2001], which make it possible to exploit the constructed grammar as a search space for equations. The parametrization of the transfer functions is then achieved through a second optimization routine. The contribution explores different aspects of the described procedure through a set of experiments. These experiments can be divided into three categories: (1) The inference of transfer functions from directly measurable parameters; (2) The estimation of global parameters for given transfer functions from runoff data; and (3) The estimation of sets of completely unknown transfer functions from runoff data. The conducted tests reveal different potentials and limits of the procedure. In concrete it is shown that example (1) and (2) work remarkably well. Example (3) is much more dependent on the setup. In general, it can be said that in that case much more data is needed to derive transfer function estimations, even for simple models and setups. References: - Chomsky, N. (1956): Three Models for the Description of Language. IT IRETr. 2(3), p 113-124 - O'Neil, M. (2001): Grammatical Evolution. IEEE ToEC, Vol.5, No. 4 - Samaniego, L.; Kumar, R.; Attinger, S. (2010): Multiscale parameter regionalization of a grid-based hydrologic model at the mesoscale. WWR, Vol. 46, W05523, doi:10.1029/2008WR007327

Quantitative impact of small angle forward scatter on whole blood oximetry using a Beer-Lambert absorbance model.

PubMed

LeBlanc, Serge Emile; Atanya, Monica; Burns, Kevin; Munger, Rejean

2011-04-21

It is well known that red blood cell scattering has an impact on whole blood oximetry as well as in vivo retinal oxygen saturation measurements. The goal of this study was to quantify the impact of small angle forward scatter on whole blood oximetry for scattering angles found in retinal oximetry light paths. Transmittance spectra of whole blood were measured in two different experimental setups: one that included small angle scatter in the transmitted signal and one that measured the transmitted signal only, at absorbance path lengths of 25, 50, 100, 250 and 500 µm. Oxygen saturation was determined by multiple linear regression in the 520-600 nm wavelength range and compared between path lengths and experimental setups. Mean calculated oxygen saturation differences between setups were greater than 10% at every absorbance path length. The deviations to the Beer-Lambert absorbance model had different spectral dependences between experimental setups, with the highest deviations found in the 520-540 nm range when scatter was added to the transmitted signal. These results are consistent with other models of forward scatter that predict different spectral dependences of the red blood cell scattering cross-section and haemoglobin extinction coefficients in this wavelength range.

The influence of spatially and temporally high-resolution wind forcing on the power input to near-inertial waves in the ocean

NASA Astrophysics Data System (ADS)

Rimac, A.; Eden, C.; von Storch, J.

2012-12-01

Coexistence of stable stratification, the meridional overturning circulation and meso-scale eddies and their influence on the ocean's circulation still raise complex questions concerning the ocean energetics. Oceanic general circulation is mainly forced by the wind field and deep water tides. Its essential energetics are the conversion of kinetic energy of the winds and tides into oceanic potential and kinetic energy. Energy needed for the circulation is bound to internal wave fields. Direct internal wave generation by the wind at the sea surface is one of the sources of this energy. Previous studies using mixed-layer type of models and low frequency wind forcings (six-hourly and daily) left room for improvement. Using mixed-layer models it is not possible to assess the distribution of near-inertial energy into the deep ocean. Also, coarse temporal resolution of wind forcing strongly underestimates the near-inertial wave energy. To overcome this difficulty we use a high resolution ocean model with high frequency wind forcings. We establish the following model setup: We use the Max Planck Institute Ocean Model (MPIOM) on a tripolar grid with 45km horizontal resolution and 40 vertical levels. We run the model with wind forcings that vary in horizontal (250km versus 40km) and temporal resolution (six versus one-hourly). In our study we answer the following questions: How big is the wind kinetic energy input to the near-inertial waves? Is the kinetic energy of the near-inertial waves enhanced when high-frequency wind forcings are used? If so, by how much and why, due to higher level of temporal wind variability or due to better spatial representation of the near-inertial waves? How big is the total power of near-inertial waves generated by the wind at the surface of the ocean? We run the model for one year. Our model results show that the near-inertial waves are excited both using wind forcings of high and low horizontal and temporal resolution. Near-inertial energy is almost two times higher when we force the model with high frequency wind forcings. The influence on the energy mostly depends on the time difference between two forcing fields while the spatial difference has little influence.

The polar amplification asymmetry: role of Antarctic surface height

NASA Astrophysics Data System (ADS)

Salzmann, Marc

2017-05-01

Previous studies have attributed an overall weaker (or slower) polar amplification in Antarctica compared to the Arctic to a weaker Antarctic surface albedo feedback and also to more efficient ocean heat uptake in the Southern Ocean in combination with Antarctic ozone depletion. Here, the role of the Antarctic surface height for meridional heat transport and local radiative feedbacks, including the surface albedo feedback, was investigated based on CO2-doubling experiments in a low-resolution coupled climate model. When Antarctica was assumed to be flat, the north-south asymmetry of the zonal mean top of the atmosphere radiation budget was notably reduced. Doubling CO2 in a flat Antarctica (flat AA) model setup led to a stronger increase in southern hemispheric poleward atmospheric and oceanic heat transport compared to the base model setup. Based on partial radiative perturbation (PRP) computations, it was shown that local radiative feedbacks and an increase in the CO2 forcing in the deeper atmospheric column also contributed to stronger Antarctic warming in the flat AA model setup, and the roles of the individual radiative feedbacks are discussed in some detail. A considerable fraction (between 24 and 80 % for three consecutive 25-year time slices starting in year 51 and ending in year 126 after CO2 doubling) of the polar amplification asymmetry was explained by the difference in surface height, but the fraction was subject to transient changes and might to some extent also depend on model uncertainties. In order to arrive at a more reliable estimate of the role of land height for the observed polar amplification asymmetry, additional studies based on ensemble runs from higher-resolution models and an improved model setup with a more realistic gradual increase in the CO2 concentration are required.

The impact of future sea-level rise on the global tides

NASA Astrophysics Data System (ADS)

Pickering, M. D.; Horsburgh, K. J.; Blundell, J. R.; Hirschi, J. J.-M.; Nicholls, R. J.; Verlaan, M.; Wells, N. C.

2017-06-01

Tides are a key component in coastal extreme water levels. Possible changes in the tides caused by mean sea-level rise (SLR) are therefore of importance in the analysis of coastal flooding, as well as many other applications. We investigate the effect of future SLR on the tides globally using a fully global forward tidal model: OTISmpi. Statistical comparisons of the modelled and observed tidal solutions demonstrate the skill of the refined model setup with no reliance on data assimilation. We simulate the response of the four primary tidal constituents to various SLR scenarios. Particular attention is paid to future changes at the largest 136 coastal cities, where changes in water level would have the greatest impact. Spatially uniform SLR scenarios ranging from 0.5 to 10 m with fixed coastlines show that the tidal amplitudes in shelf seas globally respond strongly to SLR with spatially coherent areas of increase and decrease. Changes in the M2 and S2 constituents occur globally in most shelf seas, whereas changes in K1 and O1 are confined to Asian shelves. With higher SLR tidal changes are often not proportional to the SLR imposed and larger portions of mean high water (MHW) changes are above proportional. Changes in MHW exceed ±10% of the SLR at 10% of coastal cities. SLR scenarios allowing for coastal recession tend increasingly to result in a reduction in tidal range. The fact that the fixed and recession shoreline scenarios result mainly in changes of opposing sign is explained by the effect of the perturbations on the natural period of oscillation of the basin. Our results suggest that coastal management strategies could influence the sign of the tidal amplitude change. The effect of a spatially varying SLR, in this case fingerprints of the initial elastic response to ice mass loss, modestly alters the tidal response with the largest differences at high latitudes.

Towards a Quantitative Performance Measurement Framework to Assess the Impact of Geographic Information Standards

NASA Astrophysics Data System (ADS)

Vandenbroucke, D.; Van Orshoven, J.; Vancauwenberghe, G.

2012-12-01

Over the last decennia, the use of Geographic Information (GI) has gained importance, in public as well as in private sector. But even if many spatial data and related information exist, data sets are scattered over many organizations and departments. In practice it remains difficult to find the spatial data sets needed, and to access, obtain and prepare them for using in applications. Therefore Spatial Data Infrastructures (SDI) haven been developed to enhance the access, the use and sharing of GI. SDIs consist of a set of technological and non-technological components to reach this goal. Since the nineties many SDI initiatives saw light. Ultimately, all these initiatives aim to enhance the flow of spatial data between organizations (users as well as producers) involved in intra- and inter-organizational and even cross-country business processes. However, the flow of information and its re-use in different business processes requires technical and semantic interoperability: the first should guarantee that system components can interoperate and use the data, while the second should guarantee that data content is understood by all users in the same way. GI-standards within the SDI are necessary to make this happen. However, it is not known if this is realized in practice. Therefore the objective of the research is to develop a quantitative framework to assess the impact of GI-standards on the performance of business processes. For that purpose, indicators are defined and tested in several cases throughout Europe. The proposed research will build upon previous work carried out in the SPATIALIST project. It analyzed the impact of different technological and non-technological factors on the SDI-performance of business processes (Dessers et al., 2011). The current research aims to apply quantitative performance measurement techniques - which are frequently used to measure performance of production processes (Anupindi et al., 2005). Key to reach the research objectives is a correct design of the test cases. The major challenge is: to set-up the analytical framework for analyzing the impact of GI-standards on the process performance, to define the appropriate indicators and to choose the right test cases. In order to do so, it is proposed to define the test cases as 8 pairs of organizations (see figure). The paper will present the state of the art of performance measurement in the context of work processes, propose a series of SMART indicators for describing the set-up and measure the performance, define the test case set-up and suggest criteria for the selection of the test cases, i.e. the organizational pairs. References Anupindi, R., Chopra, S., Deshmukh, S.D., Van Mieghem, J.A., & Zemel, E. (2006). Managing Business Process Flows: Principles of Operations Management. New-Jersey, USA: Prentice Hall. Dessers, D., Crompvoets, J., Janssen, K., Vancauwenberghe, G., Vandenbroucke, D. & Vanhaverbeke, L. (2011). SDI at work: The Spatial Zoning Plans Case. Leuven, Belgium: Katholieke Universiteit Leuven.

Interfraction Prostate Movement in Bone Alignment After Rectal Enema for Radiotherapy

PubMed Central

Seo, Young Eun; Kim, Tae Hyo; Lee, Ki Soo; Cho, Won Yeol; Lee, Hyung-Sik; Hur, Won-Joo

2014-01-01

Purpose To assess the effect of a rectal enema on interfraction prostate movement in bone alignment (BA) for prostate radiotherapy (RT), we analyzed the spatial difference in prostates in a bone-matched setup. Materials and Methods We performed BA retrospectively with data from prostate cancer patients who underwent image-guided RT (IGRT). The prostate was identified with implanted fiducial markers. The setup for the IGRT was conducted with the matching of three fiducial markers on RT planning computed tomography images and those on two oblique kV x-ray images. Offline BA was performed at the same position. The coordinates of a virtual prostate in BA and a real prostate were obtained by use of the ExaxTrac/NovalisBody system, and the distance between them was calculated as the spatial difference. Interfraction prostate displacement was drawn from the comparison of the spatial differences. Results A total of 15 patients with localized prostate cancer treated with curative hypofractionated IGRT were enrolled. A total of 420 fractions were analyzed. The mean of the interfraction prostate displacements after BA was 3.12±2.00 mm (range, 0.20-10.53 mm). The directional difference was profound in the anterior-posterior and supero-inferior directions (2.14±1.73 mm and 1.97±1.44 mm, respectively) compared with the right-left direction (0.26±0.22 mm, p<0.05). The required margin around the clinical target volume was 4.97 mm with the formula of van Herk et al. Conclusions The interfraction prostate displacement was less frequent when a rectal enema was performed before the procedure. A rectal enema can be used to reduce interfraction prostate displacement and resulting clinical target volume-to-planning target volume margin. PMID:24466393

Improved resolution in practical light microscopy by means of a glass-fiber 2 π-tilting device

NASA Astrophysics Data System (ADS)

Bradl, Joachim; Rinke, Bernd; Schneider, Bernhard; Hausmann, Michael; Cremer, Christoph G.

1996-01-01

The spatial resolution of a conventional light microscope or a confocal laser scanning microscope can be determined by calculating the point spread function for the objective used. Normally, ideal conditions are assumed for these calculations. Such conditions, however, are often not fulfilled in biological applications especially in those cases where biochemical requirements (e.g. buffer conditions) influence the specimen preparation on the microscope slide (i.e. 'practical' light microscopy). It has been shown that the problem of a reduced z- resolution in 3D-microscopy (optical sectioning) can be overcome by a capillary in a 2(pi) - tilting device that allows object rotation into an optimal perspective. The application of the glass capillary instead of a standard slide has an additional influence on the imaging properties of the microscope. Therefore, another 2(pi) -tilting device was developed, using a glass fiber for object fixation and rotation. Such a fiber could be covered by standard cover glasses. To estimate the resolution of this setup, point spread functions were measured under different conditions using fluorescent microspheres of subwavelength dimensions. Results obtained from standard slide setups were compared to the glass fiber setup. These results showed that in practice rotation leads to an overall 3D-resolution improvement.

A safe, low-cost, and portable instrumentation for bedside time-resolved picosecond near infrared spectroscopy

NASA Astrophysics Data System (ADS)

Amouroux, Marine; Uhring, Wilfried; Pebayle, Thierry; Poulet, Patrick; Marlier, Luc

2009-07-01

Continuous wave Near InfraRed Spectroscopy (NIRS) has been used successfully in clinical environments for several years to detect cerebral activation thanks to oxymetry (i.e. absorption of photons by oxy- and deoxy- hemoglobin) measurement. The goal of our group is to build a clinically-adapted time-resolved NIRS setup i.e. a setup that is compact and robust enough to allow bedside measurements and that matches safety requirements with human patients applications. Indeed our group has already shown that time resolution allows spatial resolution and improves sensitivity of cerebral activation detection. The setup is built with four laser diodes (excitation wavelengths: 685, 780, 830 and 870 nm) whose emitted light is injected into four optical fibers; detection of reflected photons is made through an avalanche photodiode and a high resolution timing module used to record Temporal Point Spread Functions (TPSF). Validation of the device was made using cylindrically-chaped phantoms with absorbing and/or scattering inclusions. Results show that recorded TPSF are typical both of scattering and absorbing materials thus demonstrating that our apparatus would detect variation of optical properties (absorption and scattering) deep within a diffusive media just like a cerebral activation represents a rise of absorption in the cortex underneath head surface.

Combination of structured illumination and single molecule localization microscopy in one setup

NASA Astrophysics Data System (ADS)

Rossberger, Sabrina; Best, Gerrit; Baddeley, David; Heintzmann, Rainer; Birk, Udo; Dithmar, Stefan; Cremer, Christoph

2013-09-01

Understanding the positional and structural aspects of biological nanostructures simultaneously is as much a challenge as a desideratum. In recent years, highly accurate (20 nm) positional information of optically isolated targets down to the nanometer range has been obtained using single molecule localization microscopy (SMLM), while highly resolved (100 nm) spatial information has been achieved using structured illumination microscopy (SIM). In this paper, we present a high-resolution fluorescence microscope setup which combines the advantages of SMLM with SIM in order to provide high-precision localization and structural information in a single setup. Furthermore, the combination of the wide-field SIM image with the SMLM data allows us to identify artifacts produced during the visualization process of SMLM data, and potentially also during the reconstruction process of SIM images. We describe the SMLM-SIM combo and software, and apply the instrument in a first proof-of-principle to the same region of H3K293 cells to achieve SIM images with high structural resolution (in the 100 nm range) in overlay with the highly accurate position information of localized single fluorophores. Thus, with its robust control software, efficient switching between the SMLM and SIM mode, fully automated and user-friendly acquisition and evaluation software, the SMLM-SIM combo is superior over existing solutions.

CentNet—A deployable 100-station network for surface exchange research

NASA Astrophysics Data System (ADS)

Oncley, S.; Horst, T. W.; Semmer, S.; Militzer, J.; Maclean, G.; Knudson, K.

2014-12-01

Climate, air quality, atmospheric composition, surface hydrology, and ecological processes are directly affected by the Earth's surface. Complexity of this surface exists at multiple spatial scales, which complicates the understanding of these processes. NCAR/EOL currently provides a facility to the research community to make direct eddy-covariance flux observations to quantify surface-atmosphere interactions. However, just as model resolution has continued to increase, there is a need to increase the spatial density of flux measurements to capture the wide variety of scales that contribute to exchange processes close to the surface. NCAR/EOL now has developed the CentNet facility, that is envisioned to have on the order of 100 surface flux stations deployable for periods of months to years. Each station would measure standard meteorological variables, all components of the surface energy balance (including turbulence fluxes and radiation), atmospheric composition, and other quantities to characterize the surface. Thus, CentNet can support observational research in the biogeosciences, hydrology, urban meteorology, basic meteorology, and turbulence. CentNet has been designed to be adaptable to a wide variety of research problems while keeping operations manageable. Tower infrastructure has been designed to be lightweight, easily deployed, and with a minimal set-up footprint. CentNet uses sensor networks to increase spatial sampling at each station. The data system saves every sample on site to retain flexibility in data analysis. We welcome guidance on development and funding priorities as we build CentNet.

Social Experiments in the Mesoscale: Humans Playing a Spatial Prisoner's Dilemma

PubMed Central

Grujić, Jelena; Fosco, Constanza; Araujo, Lourdes; Cuesta, José A.; Sánchez, Angel

2010-01-01

Background The evolutionary origin of cooperation among unrelated individuals remains a key unsolved issue across several disciplines. Prominent among the several mechanisms proposed to explain how cooperation can emerge is the existence of a population structure that determines the interactions among individuals. Many models have explored analytically and by simulation the effects of such a structure, particularly in the framework of the Prisoner's Dilemma, but the results of these models largely depend on details such as the type of spatial structure or the evolutionary dynamics. Therefore, experimental work suitably designed to address this question is needed to probe these issues. Methods and Findings We have designed an experiment to test the emergence of cooperation when humans play Prisoner's Dilemma on a network whose size is comparable to that of simulations. We find that the cooperation level declines to an asymptotic state with low but nonzero cooperation. Regarding players' behavior, we observe that the population is heterogeneous, consisting of a high percentage of defectors, a smaller one of cooperators, and a large group that shares features of the conditional cooperators of public goods games. We propose an agent-based model based on the coexistence of these different strategies that is in good agreement with all the experimental observations. Conclusions In our large experimental setup, cooperation was not promoted by the existence of a lattice beyond a residual level (around 20%) typical of public goods experiments. Our findings also indicate that both heterogeneity and a “moody” conditional cooperation strategy, in which the probability of cooperating also depends on the player's previous action, are required to understand the outcome of the experiment. These results could impact the way game theory on graphs is used to model human interactions in structured groups. PMID:21103058

Improving catchment discharge predictions by inferring flow route contributions from a nested-scale monitoring and model setup

NASA Astrophysics Data System (ADS)

van der Velde, Y.; Rozemeijer, J. C.; de Rooij, G. H.; van Geer, F. C.; Torfs, P. J. J. F.; de Louw, P. G. B.

2011-03-01

Identifying effective measures to reduce nutrient loads of headwaters in lowland catchments requires a thorough understanding of flow routes of water and nutrients. In this paper we assess the value of nested-scale discharge and groundwater level measurements for the estimation of flow route volumes and for predictions of catchment discharge. In order to relate field-site measurements to the catchment-scale an upscaling approach is introduced that assumes that scale differences in flow route fluxes originate from differences in the relationship between groundwater storage and the spatial structure of the groundwater table. This relationship is characterized by the Groundwater Depth Distribution (GDD) curve that relates spatial variation in groundwater depths to the average groundwater depth. The GDD-curve was measured for a single field site (0.009 km2) and simple process descriptions were applied to relate groundwater levels to flow route discharges. This parsimonious model could accurately describe observed storage, tube drain discharge, overland flow and groundwater flow simultaneously with Nash-Sutcliff coefficients exceeding 0.8. A probabilistic Monte Carlo approach was applied to upscale field-site measurements to catchment scales by inferring scale-specific GDD-curves from the hydrographs of two nested catchments (0.4 and 6.5 km2). The estimated contribution of tube drain effluent (a dominant source for nitrates) decreased with increasing scale from 76-79% at the field-site to 34-61% and 25-50% for both catchment scales. These results were validated by demonstrating that a model conditioned on nested-scale measurements improves simulations of nitrate loads and predictions of extreme discharges during validation periods compared to a model that was conditioned on catchment discharge only.

Spatial sensitivity of inorganic carbon to model setup: North Sea and Baltic Sea with ECOSMO

NASA Astrophysics Data System (ADS)

Castano Primo, Rocio; Schrum, Corinna; Daewel, Ute

2015-04-01

In ocean biogeochemical models it is critical to capture the key processes adequately so they do not only reproduce the observations but that those processes are reproduced correctly. One key issue is the choice of parameters, which in most cases are estimates with large uncertainties. This can be the product of actual lack of detailed knowledge of the process, or the manner the processes are implemented, more or less complex. In addition, the model sensitivity is not necessarily homogenous across the spatial domain modelled, which adds another layer of complexity to biogeochemical modelling. In the particular case of the inorganic carbon cycle, there are several sets of carbonate constants that can be chosen. The calculated air-sea CO2 flux is largely dependent on the parametrization chosen. In addition, the different parametrizations all the underlying processes that in some way impact the carbon cycle beyond the carbonate dissociation and fluxes give results that can be significantly different. Examples of these processes are phytoplankton growth rates or remineralization rates. Despite their geographical proximity, the North and Baltic Seas exhibit very different dynamics. The North Sea receives important inflows of Atlantic waters, while the Baltic Sea is an almost enclosed system, with very little exchange from the North Sea. Wind, tides, and freshwater supply act very differently, but dominantly structure the ecosystem dynamics on spatial and temporal scales. The biological community is also different. Cyanobacteria, which are important due to their ability to fix atmospheric nitrogen, and they are only present in the Baltic Sea. These differentiating features have a strong impact in the biogeochemical cycles and ultimately shape the variations in the carbonate chemistry. Here the ECOSMO model was employed on the North Sea and Baltic Sea. The model is set so both are modelled at the same time, instead of having them run separately. ECOSMO is a 3-D coupled physical-biogeochemical model, which resolves the cycles of nitrogen, phosphorus and silicate. It includes 3 functional groups of phytoplankton and 2 groups of zooplankton. In addition, an inorganic carbon module has been incorporated and coupled. Alkalinity and DIC are chosen as prognostic variables, from which pH, pCO2 and air-sea CO2 flux are calculated. The model is run with different sets of carbonate dissociation parameters, air-sea flux parametrizations, phytoplankton growth and remineralization rates. The sensitivity of the inorganic carbon variables will be assessed, both in the whole model domain and the North and Baltic Sea independently. We search for the critical parameters that have a larger impact, whether such impact is spatially dependent and the effect on the validation of the carbonate module.

Dynamic MTF, an innovative test bench for detector characterization

NASA Astrophysics Data System (ADS)

Emmanuel, Rossi; Raphaël, Lardière; Delmonte, Stephane

2017-11-01

PLEIADES HR are High Resolution satellites for Earth observation. Placed at 695km they reach a 0.7m spatial resolution. To allow such performances, the detectors are working in a TDI mode (Time and Delay Integration) which consists in a continuous charge transfer from one line to the consecutive one while the image is passing on the detector. The spatial resolution, one of the most important parameter to test, is characterized by the MTF (Modulation Transfer Function). Usually, detectors are tested in a staring mode. For a higher level of performances assessment, a dedicated bench has been set-up, allowing detectors' MTF characterization in the TDI mode. Accuracy and reproducibility are impressive, opening the door to new perspectives in term of HR imaging systems testing.

VizieR Online Data Catalog: Star cluster Gaia 1 stars equivalent widths (Koch+, 2018)

NASA Astrophysics Data System (ADS)

Koch, A.; Hansen, T.; Kunder, A.

2017-09-01

Observations of four candidate members were taken during four nights in March 2017 using the Echelle spectrograph at the 2.5-m du Pont telescope at the Las Campanas Observatory, Chile, with a seeing of 0.7"-1.0" throughout the nights. Our spectroscopic set-up included a 1.0" slit with 2x1 binning in spectral and spatial dimensions, resulting in a resolving power of R~25000. (2 data files).

Wireless Testbed Bonsai

DTIC Science & Technology

2006-02-01

wireless sensor device network, and a about 200 Stargate nodes higher-tier multi-hop peer- to-peer 802.11b wireless network. Leading up to the full ExScal...deployment, we conducted spatial scaling tests on our higher-tier protocols on a 7 × 7 grid of Stargates nodes 45m and with 90m separations respectively...onW and its scaled version W̃ . III. EXPERIMENTAL SETUP Description of Kansei testbed. A stargate is a single board linux-based computer [7]. It uses a

Single-shot measurement of nonlinear absorption and nonlinear refraction.

PubMed

Jayabalan, J; Singh, Asha; Oak, Shrikant M

2006-06-01

A single-shot method for measurement of nonlinear optical absorption and refraction is described and analyzed. A spatial intensity variation of an elliptical Gaussian beam in conjugation with an array detector is the key element of this method. The advantages of this single-shot technique were demonstrated by measuring the two-photon absorption and free-carrier absorption in GaAs as well as the nonlinear refractive index of CS2 using a modified optical Kerr setup.

A Digital Bistatic Radar Instrument for High-Latitude Ionospheric E-region Research

NASA Astrophysics Data System (ADS)

Huyghebaert, D. R.; Hussey, G. C.; McWilliams, K. A.; St-Maurice, J. P.

2015-12-01

A new 50 MHz ionospheric E-region radar is currently being developed and will be operational for the summer of 2016. The radar group in the Institute of Space and Atmospheric Studies (ISAS) at the University of Saskatchewan is designing and building the radar which will be located near the university in Saskatoon, SK, Canada and will have a field of view over Wollaston Lake in northern Saskatchewan. This novel radar will simultaneously obtain high spatial and temporal resolution through the use of a bistatic setup and pulse modulation techniques. The bistatic setup allows the radar to transmit and receive continuously, while pulse modulation techniques allow for enhanced spatial resolution, only constrained by the radio bandwidth licensing available. A ten antenna array will be used on both the transmitter and receiver sides, with each antenna having an independent radio path. This enables complete digital control of the transmitted 1 kW signal at each antenna, allowing for digital beam steering and multimode broadcasting. On the receiver side the raw digitized signal will be recorded from each antenna, allowing for complete digital post-processing to be performed on the data. From the measurements provided using these modern digital radar capabilities, further insights into the physics of E-region phenomena, such as Alfvén waves propagating from the magnetosphere above and ionospheric irregularities, may be investigated.

Synchronized and noise-robust audio recordings during realtime magnetic resonance imaging scans.

PubMed

Bresch, Erik; Nielsen, Jon; Nayak, Krishna; Narayanan, Shrikanth

2006-10-01

This letter describes a data acquisition setup for recording, and processing, running speech from a person in a magnetic resonance imaging (MRI) scanner. The main focus is on ensuring synchronicity between image and audio acquisition, and in obtaining good signal to noise ratio to facilitate further speech analysis and modeling. A field-programmable gate array based hardware design for synchronizing the scanner image acquisition to other external data such as audio is described. The audio setup itself features two fiber optical microphones and a noise-canceling filter. Two noise cancellation methods are described including a novel approach using a pulse sequence specific model of the gradient noise of the MRI scanner. The setup is useful for scientific speech production studies. Sample results of speech and singing data acquired and processed using the proposed method are given.

Synchronized and noise-robust audio recordings during realtime magnetic resonance imaging scans (L)

PubMed Central

Bresch, Erik; Nielsen, Jon; Nayak, Krishna; Narayanan, Shrikanth

2007-01-01

This letter describes a data acquisition setup for recording, and processing, running speech from a person in a magnetic resonance imaging (MRI) scanner. The main focus is on ensuring synchronicity between image and audio acquisition, and in obtaining good signal to noise ratio to facilitate further speech analysis and modeling. A field-programmable gate array based hardware design for synchronizing the scanner image acquisition to other external data such as audio is described. The audio setup itself features two fiber optical microphones and a noise-canceling filter. Two noise cancellation methods are described including a novel approach using a pulse sequence specific model of the gradient noise of the MRI scanner. The setup is useful for scientific speech production studies. Sample results of speech and singing data acquired and processed using the proposed method are given. PMID:17069275

Modular invariant inflation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kobayashi, Tatsuo; Nitta, Daisuke; Urakawa, Yuko

2016-08-08

Modular invariance is a striking symmetry in string theory, which may keep stringy corrections under control. In this paper, we investigate a phenomenological consequence of the modular invariance, assuming that this symmetry is preserved as well as in a four dimensional (4D) low energy effective field theory. As a concrete setup, we consider a modulus field T whose contribution in the 4D effective field theory remains invariant under the modular transformation and study inflation drived by T. The modular invariance restricts a possible form of the scalar potenntial. As a result, large field models of inflation are hardly realized. Meanwhile,more » a small field model of inflation can be still accomodated in this restricted setup. The scalar potential traced during the slow-roll inflation mimics the hilltop potential V{sub ht}, but it also has a non-negligible deviation from V{sub ht}. Detecting the primordial gravitational waves predicted in this model is rather challenging. Yet, we argue that it may be still possible to falsify this model by combining the information in the reheating process which can be determined self-completely in this setup.« less

Modelling Atmospheric Rivers and the Potential for Southeast Texas Flooding: A Case Study of the Maya Express and the March 2016 Sabine River Flood

NASA Astrophysics Data System (ADS)

McIntosh, J.; Lander, K.

2016-12-01

For three days in March of 2016, southeast Texas was inundated with up to 19 inches of rainfall, swelling the Sabine River to record flood stages. This event was attributed to an atmospheric river (AR), regionally known as the "Maya Express," which carried moisture from the Gulf of Mexico into the Sabine River Basin. Studies by the NOAA/NWS Climate Prediction Center have shown that ARs are occurring more frequently due to the intensification of El Niño that increases the available moisture in the atmosphere. In this study, we analyzed the hydrological and meteorological setup of the event on the Sabine River to characterize the flood threat associated with AR rainfall and simulated how an equivalent AR event would impact an urban basin in Houston, Texas. Our primary data sources included WSR-88D radar-based rainfall estimates and observed data at USGS river gauges. Furthermore, the land surface parameters evaluated included land cover, soil types, basin topology, model-derived soil moisture states, and topography. The spatial distribution of precipitation from the storm was then translated west over the Houston and used to force a hydrologic model to assess the impact of an event comparable to the March 2016 event on Houston's San Jacinto River Basin. The results indicate that AR precipitation poses a flood risk to urbanized areas in southeast Texas because of the low lying topography, impervious pavement, and limited flood control. Due to this hydrologic setup, intense AR rainfall can yield a rapid urban runoff response that overwhelms the river system, potentially endangering the lives and property of millions of people in the Houston area. Ultimately, if the frequency of AR development increases, regional flood potential may increase. Given the consequences established in this study, more research should be conducted in order to better predict the rate of recurrence and effects of Maya Express generated precipitation.

A laboratory procedure for measuring and georeferencing soil colour

NASA Astrophysics Data System (ADS)

Marques-Mateu, A.; Balaguer-Puig, M.; Moreno-Ramon, H.; Ibanez-Asensio, S.

2015-04-01

Remote sensing and geospatial applications very often require ground truth data to assess outcomes from spatial analyses or environmental models. Those data sets, however, may be difficult to collect in proper format or may even be unavailable. In the particular case of soil colour the collection of reliable ground data can be cumbersome due to measuring methods, colour communication issues, and other practical factors which lead to a lack of standard procedure for soil colour measurement and georeferencing. In this paper we present a laboratory procedure that provides colour coordinates of georeferenced soil samples which become useful in later processing stages of soil mapping and classification from digital images. The procedure requires a laboratory setup consisting of a light booth and a trichromatic colorimeter, together with a computer program that performs colour measurement, storage, and colour space transformation tasks. Measurement tasks are automated by means of specific data logging routines which allow storing recorded colour data in a spatial format. A key feature of the system is the ability of transforming between physically-based colour spaces and the Munsell system which is still the standard in soil science. The working scheme pursues the automation of routine tasks whenever possible and the avoidance of input mistakes by means of a convenient layout of the user interface. The program can readily manage colour and coordinate data sets which eventually allow creating spatial data sets. All the tasks regarding data joining between colorimeter measurements and samples locations are executed by the software in the background, allowing users to concentrate on samples processing. As a result, we obtained a robust and fully functional computer-based procedure which has proven a very useful tool for sample classification or cataloging purposes as well as for integrating soil colour data with other remote sensed and spatial data sets.

Many-body localization proximity effects in platforms of coupled spins and bosons

NASA Astrophysics Data System (ADS)

Marino, J.; Nandkishore, R. M.

2018-02-01

We discuss the onset of many-body localization in a one-dimensional system composed of a XXZ quantum spin chain and a Bose-Hubbard model linearly coupled together. We consider two complementary setups, depending whether spatial disorder is initially imprinted on spins or on bosons; in both cases, we explore the conditions for the disordered portion of the system to localize by proximity of the other clean half. Assuming that the dynamics of one of the two parts develops on shorter time scales than the other, we can adiabatically eliminate the fast degrees of freedom, and derive an effective Hamiltonian for the system's remainder using projection operator techniques. Performing a locator expansion on the strength of the many-body interaction term or on the hopping amplitude of the effective Hamiltonian thus derived, we present results on the stability of the many-body localized phases induced by proximity effect. We also briefly comment on the feasibility of the proposed model through modern quantum optics architectures, with the long-term perspective to realize experimentally, in composite open systems, Anderson or many-body localization proximity effects.

Laboratory Scale X-ray Fluorescence Tomography: Instrument Characterization and Application in Earth and Environmental Science.

PubMed

Laforce, Brecht; Vermeulen, Bram; Garrevoet, Jan; Vekemans, Bart; Van Hoorebeke, Luc; Janssen, Colin; Vincze, Laszlo

2016-03-15

A new laboratory scale X-ray fluorescence (XRF) imaging instrument, based on an X-ray microfocus tube equipped with a monocapillary optic, has been developed to perform XRF computed tomography experiments with both higher spatial resolution (20 μm) and a better energy resolution (130 eV @Mn-K(α)) than has been achieved up-to-now. This instrument opens a new range of possible applications for XRF-CT. Next to the analytical characterization of the setup by using well-defined model/reference samples, demonstrating its capabilities for tomographic imaging, the XRF-CT microprobe has been used to image the interior of an ecotoxicological model organism, Americamysis bahia. This had been exposed to elevated metal (Cu and Ni) concentrations. The technique allowed the visualization of the accumulation sites of copper, clearly indicating the affected organs, i.e. either the gastric system or the hepatopancreas. As another illustrative application, the scanner has been employed to investigate goethite spherules from the Cretaceous-Paleogene boundary, revealing the internal elemental distribution of these valuable distal ejecta layer particles.

PSpice Modeling of a Sandwich Piezoelectric Ceramic Ultrasonic Transducer in Longitudinal Vibration

PubMed Central

Wei, Xiaoyuan; Yang, Yuan; Yao, Wenqing; Zhang, Lei

2017-01-01

Sandwiched piezoelectric transducers are widely used, especially in high power applications. For more convenient analysis and design, a PSpice lossy model of sandwiched piezoelectric ultrasonic transducers in longitudinal vibration is proposed by means of the one-dimensional wave and transmission line theories. With the proposed model, the resonance and antiresonance frequencies are obtained, and it is shown that the simulations and measurements have good consistency. For the purpose of further verification the accuracy and application of the PSpice model, a pitch-catch setup and an experimental platform are built. They include two sandwiched piezoelectric ultrasonic transducers and two aluminum cylinders whose lengths are 20 mm and 100 mm respectively. Based on this pitch-catch setup, the impedance and transient analysis are performed. Compared with the measured results, it is shown that the simulated results have good consistency. In addition, the conclusion can be drawn that the optimal excitation frequency for the pitch-catch setup is not necessarily the resonance frequency of ultrasonic transducers, because the resonance frequency is obtained under no load. The proposed PSpice model of the sandwiched piezoelectric transducer is more conveniently applied to combine with other circuits such as driving circuits, filters, amplifiers, and so on. PMID:28973996

PSpice Modeling of a Sandwich Piezoelectric Ceramic Ultrasonic Transducer in Longitudinal Vibration.

PubMed

Wei, Xiaoyuan; Yang, Yuan; Yao, Wenqing; Zhang, Lei

2017-09-30

Sandwiched piezoelectric transducers are widely used, especially in high power applications. For more convenient analysis and design, a PSpice lossy model of sandwiched piezoelectric ultrasonic transducers in longitudinal vibration is proposed by means of the one-dimensional wave and transmission line theories. With the proposed model, the resonance and antiresonance frequencies are obtained, and it is shown that the simulations and measurements have good consistency. For the purpose of further verification the accuracy and application of the PSpice model, a pitch-catch setup and an experimental platform are built. They include two sandwiched piezoelectric ultrasonic transducers and two aluminum cylinders whose lengths are 20 mm and 100 mm respectively. Based on this pitch-catch setup, the impedance and transient analysis are performed. Compared with the measured results, it is shown that the simulated results have good consistency. In addition, the conclusion can be drawn that the optimal excitation frequency for the pitch-catch setup is not necessarily the resonance frequency of ultrasonic transducers, because the resonance frequency is obtained under no load. The proposed PSpice model of the sandwiched piezoelectric transducer is more conveniently applied to combine with other circuits such as driving circuits, filters, amplifiers, and so on.

Spatio-temporal Variability of Albedo and its Impact on Glacier Melt Modelling

NASA Astrophysics Data System (ADS)

Kinnard, C.; Mendoza, C.; Abermann, J.; Petlicki, M.; MacDonell, S.; Urrutia, R.

2017-12-01

Albedo is an important variable for the surface energy balance of glaciers, yet its representation within distributed glacier mass-balance models is often greatly simplified. Here we study the spatio-temporal evolution of albedo on Glacier Universidad, central Chile (34°S, 70°W), using time-lapse terrestrial photography, and investigate its effect on the shortwave radiation balance and modelled melt rates. A 12 megapixel digital single-lens reflex camera was setup overlooking the glacier and programmed to take three daily images of the glacier during a two-year period (2012-2014). One image was chosen for each day with no cloud shading on the glacier. The RAW images were projected onto a 10m resolution digital elevation model (DEM), using the IMGRAFT software (Messerli and Grinsted, 2015). A six-parameter camera model was calibrated using a single image and a set of 17 ground control points (GCPs), yielding a georeferencing accuracy of <1 pixel in image coordinates. The camera rotation was recalibrated for new images based on a set of common tie points over stable terrain, thus accounting for possible camera movement over time. The reflectance values from the projected image were corrected for topographic and atmospheric influences using a parametric solar irradiation model, following a modified algorithm based on Corripio (2004), and then converted to albedo using reference albedo measurements from an on-glacier automatic weather station (AWS). The image-based albedo was found to compare well with independent albedo observations from a second AWS in the glacier accumulation area. Analysis of the albedo maps showed that the albedo is more spatially-variable than the incoming solar radiation, making albedo a more important factor of energy balance spatial variability. The incorporation of albedo maps within an enhanced temperature index melt model revealed that the spatio-temporal variability of albedo is an important factor for the calculation of glacier-wide meltwater fluxes.

Limit Theory for Panel Data Models with Cross Sectional Dependence and Sequential Exogeneity

PubMed Central

Kuersteiner, Guido M.; Prucha, Ingmar R.

2013-01-01

The paper derives a general Central Limit Theorem (CLT) and asymptotic distributions for sample moments related to panel data models with large n. The results allow for the data to be cross sectionally dependent, while at the same time allowing the regressors to be only sequentially rather than strictly exogenous. The setup is sufficiently general to accommodate situations where cross sectional dependence stems from spatial interactions and/or from the presence of common factors. The latter leads to the need for random norming. The limit theorem for sample moments is derived by showing that the moment conditions can be recast such that a martingale difference array central limit theorem can be applied. We prove such a central limit theorem by first extending results for stable convergence in Hall and Hedye (1980) to non-nested martingale arrays relevant for our applications. We illustrate our result by establishing a generalized estimation theory for GMM estimators of a fixed effect panel model without imposing i.i.d. or strict exogeneity conditions. We also discuss a class of Maximum Likelihood (ML) estimators that can be analyzed using our CLT. PMID:23794781

Evaluation of a high framerate multi-exposure laser speckle contrast imaging setup

NASA Astrophysics Data System (ADS)

Hultman, Martin; Fredriksson, Ingemar; Strömberg, Tomas; Larsson, Marcus

2018-02-01

We present a first evaluation of a new multi-exposure laser speckle contrast imaging (MELSCI) system for assessing spatial variations in the microcirculatory perfusion. The MELSCI system is based on a 1000 frames per second 1-megapixel camera connected to a field programmable gate arrays (FPGA) capable of producing MELSCI data in realtime. The imaging system is evaluated against a single point laser Doppler flowmetry (LDF) system during occlusionrelease provocations of the arm in five subjects. Perfusion is calculated from MELSCI data using current state-of-the-art inverse models. The analysis displayed a good agreement between measured and modeled data, with an average error below 6%. This strongly indicates that the applied model is capable of accurately describing the MELSCI data and that the acquired data is of high quality. Comparing readings from the occlusion-release provocation showed that the MELSCI perfusion was significantly correlated (R=0.83) to the single point LDF perfusion, clearly outperforming perfusion estimations based on a single exposure time. We conclude that the MELSCI system provides blood flow images of enhanced quality, taking us one step closer to a system that accurately can monitor dynamic changes in skin perfusion over a large area in real-time.

Moving bed reactor setup to study complex gas-solid reactions.

PubMed

Gupta, Puneet; Velazquez-Vargas, Luis G; Valentine, Charles; Fan, Liang-Shih

2007-08-01

A moving bed scale reactor setup for studying complex gas-solid reactions has been designed in order to obtain kinetic data for scale-up purpose. In this bench scale reactor setup, gas and solid reactants can be contacted in a cocurrent and countercurrent manner at high temperatures. Gas and solid sampling can be performed through the reactor bed with their composition profiles determined at steady state. The reactor setup can be used to evaluate and corroborate model parameters accounting for intrinsic reaction rates in both simple and complex gas-solid reaction systems. The moving bed design allows experimentation over a variety of gas and solid compositions in a single experiment unlike differential bed reactors where the gas composition is usually fixed. The data obtained from the reactor can also be used for direct scale-up of designs for moving bed reactors.

Clinical experience with a 3D surface patient setup system for alignment of partial-breast irradiation patients

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bert, Christoph; Metheany, Katherine G.; Doppke, Karen P.

2006-03-15

Purpose: To assess the utility of surface imaging on patient setup for accelerated partial-breast irradiation (APBI). Methods and Material: A photogrammetry system was used in parallel to APBI setup by laser and portal imaging. Surface data were acquired after laser and port-film setup for 9 patients. Surfaces were analyzed in comparison to a reference surface from the first treatment session by use of rigid transformations. The surface model after laser setup was used in a simulated photogrammetry setup procedure. In addition, breathing data were acquired by surface acquisition at a frame rate of 7 Hz. Results: Mean 3D displacement wasmore » 7.3 mm (SD, 4.4 mm) and 7.6 mm (SD, 4.2 mm) for laser and port film, respectively. Simulated setup with the photogrammetry system yielded mean displacement of 1 mm (SD, 1.2 mm). Distance analysis resulted in mean distances of 3.7 mm (SD, 4.9 mm), 4.3 mm (SD, 5.6 mm), and 1.6 mm (SD, 2.4 mm) for laser, port film, and photogrammetry, respectively. Breathing motion at isocenter was smaller than 3.7 mm, with a mean of 1.9 mm (SD, 1.1 mm). Conclusions: Surface imaging for PBI setup appears promising. Alignment of the 3D breast surface achieved by stereo-photogrammetry shows greater breast topology congruence than when patients are set up by laser or portal imaging. A correlation of breast surface and CTV must be quantitatively established.« less

Experimental Investigation of Spatially-Periodic Scalar Patterns in an Inline Mixer

NASA Astrophysics Data System (ADS)

Baskan, Ozge; Speetjens, Michel F. M.; Clercx, Herman J. H.

2015-11-01

Spatially persisting patterns with exponentially decaying intensities form during the downstream evolution of passive scalars in three-dimensional (3D) spatially periodic flows due to the coupled effect of the chaotic nature of the flow and the diffusivity of the material. This has been investigated in many computational and theoretical studies on 3D spatially-periodic flow fields. However, in the limit of zero-diffusivity, the evolution of the scalar fields results in more detailed structures that can only be captured by experiments due to limitations in the computational tools. Our study employs the-state-of-the-art experimental methods to analyze the evolution of 3D advective scalar field in a representative inline mixer, called Quatro static mixer. The experimental setup consists of an optically accessible test section with transparent internal elements, accommodating a pressure-driven pipe flow and equipped with 3D Laser-Induced Fluorescence. The results reveal that the continuous process of stretching and folding of material creates finer structures as the flow progresses, which is an indicator of chaotic advection and the experiments outperform the simulations by revealing far greater level of detail.

Wavelength-independent constant period spin-echo modulated small angle neutron scattering

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sales, Morten, E-mail: lsp260@alumni.ku.dk; Plomp, Jeroen; Bouwman, Wim

2016-06-15

Spin-Echo Modulated Small Angle Neutron Scattering (SEMSANS) in Time-of-Flight (ToF) mode has been shown to be a promising technique for measuring (very) small angle neutron scattering (SANS) signals and performing quantitative Dark-Field Imaging (DFI), i.e., SANS with 2D spatial resolution. However, the wavelength dependence of the modulation period in the ToF spin-echo mode has so far limited the useful modulation periods to those resolvable with the limited spatial resolution of the detectors available. Here we present our results of an approach to keep the period of the induced modulation constant for the wavelengths utilised in ToF. This is achieved bymore » ramping the magnetic fields in the coils responsible for creating the spatially modulated beam in synchronisation with the neutron pulse, thus keeping the modulation period constant for all wavelengths. Such a setup enables the decoupling of the spatial detector resolution from the resolution of the modulation period by the use of slits or gratings in analogy to the approach in grating-based neutron DFI.« less

Matched-filtering generalized phase contrast using LCoS pico-projectors for beam-forming.

PubMed

Bañas, Andrew; Palima, Darwin; Glückstad, Jesper

2012-04-23

We report on a new beam-forming system for generating high intensity programmable optical spikes using so-called matched-filtering Generalized Phase Contrast (mGPC) applying two consumer handheld pico-projectors. Such a system presents a low-cost alternative for optical trapping and manipulation, optical lattices and other beam-shaping applications usually implemented with high-end spatial light modulators. Portable pico-projectors based on liquid crystal on silicon (LCoS) devices are used as binary phase-only spatial light modulators by carefully setting the appropriate polarization of the laser illumination. The devices are subsequently placed into the object and Fourier plane of a standard 4f-setup according to the mGPC spatial filtering configuration. Having a reconfigurable spatial phase filter, instead of a fixed and fabricated one, allows the beam shaper to adapt to different input phase patterns suited for different requirements. Despite imperfections in these consumer pico-projectors, the mGPC approach tolerates phase aberrations that would have otherwise been hard to overcome by standard phase projection. © 2012 Optical Society of America

A straightforward approach for gated STED-FCS to investigate lipid membrane dynamics

PubMed Central

Clausen, Mathias P.; Sezgin, Erdinc; Bernardino de la Serna, Jorge; Waithe, Dominic; Lagerholm, B. Christoffer; Eggeling, Christian

2015-01-01

Recent years have seen the development of multiple technologies to investigate, with great spatial and temporal resolution, the dynamics of lipids in cellular and model membranes. One of these approaches is the combination of far-field super-resolution stimulated-emission-depletion (STED) microscopy with fluorescence correlation spectroscopy (FCS). STED-FCS combines the diffraction-unlimited spatial resolution of STED microscopy with the statistical accuracy of FCS to determine sub-millisecond-fast molecular dynamics with single-molecule sensitivity. A unique advantage of STED-FCS is that the observation spot for the FCS data recordings can be tuned to sub-diffraction scales, i.e. <200 nm in diameter, in a gradual manner to investigate fast diffusion of membrane-incorporated labelled entities. Unfortunately, so far the STED-FCS technology has mostly been applied on a few custom-built setups optimised for far-red fluorescent emitters. Here, we summarise the basics of the STED-FCS technology and highlight how it can give novel details into molecular diffusion modes. Most importantly, we present a straightforward way for performing STED-FCS measurements on an unmodified turnkey commercial system using a time-gated detection scheme. Further, we have evaluated the STED-FCS performance of different commonly used green emitting fluorescent dyes applying freely available, custom-written analysis software. PMID:26123184

Foundations of a laser-accelerated plasma diagnostics and beam stabilization with miniaturized Rogowski coils

NASA Astrophysics Data System (ADS)

Gruenwald, J.; Kocoń, D.; Khikhlukha, D.

2018-03-01

In order to introduce spatially resolved measurements of the plasma density in a plasma accelerated by a laser, a novel concept is proposed in this work. We suggest the usage of an array of miniaturized Rogowski coils to measure the current contributions parallel to the laser beam with a spatial resolution in the sub-mm range. The principle of the experimental setup will be shown in 3-D CAD models. The coils are coaxial to the plasma channel (e.g. a hydrogen filled capillary, which is frequently used in laser-plasma acceleration experiments). This plasma diagnostics method is simple, robust and it is a passive measurement technique, which does not disturb the plasma itself. As such coils rely on a Biot-Savart inductivity, they allow to separate the contributions of the parallel from perpendicular currents (with respect to the laser beam). Rogowski coils do not have a ferromagnetic core. Hence, non-linear effects resulting from such a core are to be neglected, which increases the reliability of the obtained data. They also allow the diagnosis of transient signals that carry high currents (up to several hundred kA) on very short timescales. Within this paper some predictions about the time resolution of such coils will be presented along with simple theoretical considerations.

What Do They Have in Common? Physical Drivers of Streamflow Spatial Correlation and Prediction of Flow Regimes at Ungauged Locations in the Contiguous United States

NASA Astrophysics Data System (ADS)

Betterle, A.; Schirmer, M.; Botter, G.

2017-12-01

Streamflow dynamics strongly influence anthropogenic activities and the ecological functions of riverine and riparian habitats. However, the widespread lack of direct discharge measurements often challenges the set-up of conscious and effective decision-making processes, including droughts and floods protection, water resources management and river restoration practices. By characterizing the spatial correlation of daily streamflow timeseries at two arbitrary locations, this study provides a method to evaluate how spatially variable catchment-scale hydrological process affects the resulting streamflow dynamics along and across river systems. In particular, streamflow spatial correlation is described analytically as a function of morphological, climatic and vegetation properties in the contributing catchments, building on a joint probabilistic description of flow dynamics at pairs of outlets. The approach enables an explicit linkage between similarities of flow dynamics and spatial patterns of hydrologically relevant features of climate and landscape. Therefore, the method is suited to explore spatial patterns of streamflow dynamics across geomorphoclimatic gradients. In particular, we show how the streamflow correlation can be used at the continental scale to individuate catchment pairs with similar hydrological dynamics, thereby providing a useful tool for the estimate of flow duration curves in poorly gauged areas.

Estimating spatially distributed turbulent heat fluxes from high-resolution thermal imagery acquired with a UAV system

PubMed Central

Brenner, Claire; Thiem, Christina Elisabeth; Wizemann, Hans-Dieter; Bernhardt, Matthias; Schulz, Karsten

2017-01-01

ABSTRACT In this study, high-resolution thermal imagery acquired with a small unmanned aerial vehicle (UAV) is used to map evapotranspiration (ET) at a grassland site in Luxembourg. The land surface temperature (LST) information from the thermal imagery is the key input to a one-source and two-source energy balance model. While the one-source model treats the surface as a single uniform layer, the two-source model partitions the surface temperature and fluxes into soil and vegetation components. It thus explicitly accounts for the different contributions of both components to surface temperature as well as turbulent flux exchange with the atmosphere. Contrary to the two-source model, the one-source model requires an empirical adjustment parameter in order to account for the effect of the two components. Turbulent heat flux estimates of both modelling approaches are compared to eddy covariance (EC) measurements using the high-resolution input imagery UAVs provide. In this comparison, the effect of different methods for energy balance closure of the EC data on the agreement between modelled and measured fluxes is also analysed. Additionally, the sensitivity of the one-source model to the derivation of the empirical adjustment parameter is tested. Due to the very dry and hot conditions during the experiment, pronounced thermal patterns developed over the grassland site. These patterns result in spatially variable turbulent heat fluxes. The model comparison indicates that both models are able to derive ET estimates that compare well with EC measurements under these conditions. However, the two-source model, with a more complex treatment of the energy and surface temperature partitioning between the soil and vegetation, outperformed the simpler one-source model in estimating sensible and latent heat fluxes. This is consistent with findings from prior studies. For the one-source model, a time-variant expression of the adjustment parameter (to account for the difference between aerodynamic and radiometric temperature) that depends on the surface-to-air temperature gradient yielded the best agreement with EC measurements. This study showed that the applied UAV system equipped with a dual-camera set-up allows for the acquisition of thermal imagery with high spatial and temporal resolution that illustrates the small-scale heterogeneity of thermal surface properties. The UAV-based thermal imagery therefore provides the means for analysing patterns of LST and other surface properties with a high level of detail that cannot be obtained by traditional remote sensing methods. PMID:28515537

Estimating spatially distributed turbulent heat fluxes from high-resolution thermal imagery acquired with a UAV system.

PubMed

Brenner, Claire; Thiem, Christina Elisabeth; Wizemann, Hans-Dieter; Bernhardt, Matthias; Schulz, Karsten

2017-05-19

In this study, high-resolution thermal imagery acquired with a small unmanned aerial vehicle (UAV) is used to map evapotranspiration (ET) at a grassland site in Luxembourg. The land surface temperature (LST) information from the thermal imagery is the key input to a one-source and two-source energy balance model. While the one-source model treats the surface as a single uniform layer, the two-source model partitions the surface temperature and fluxes into soil and vegetation components. It thus explicitly accounts for the different contributions of both components to surface temperature as well as turbulent flux exchange with the atmosphere. Contrary to the two-source model, the one-source model requires an empirical adjustment parameter in order to account for the effect of the two components. Turbulent heat flux estimates of both modelling approaches are compared to eddy covariance (EC) measurements using the high-resolution input imagery UAVs provide. In this comparison, the effect of different methods for energy balance closure of the EC data on the agreement between modelled and measured fluxes is also analysed. Additionally, the sensitivity of the one-source model to the derivation of the empirical adjustment parameter is tested. Due to the very dry and hot conditions during the experiment, pronounced thermal patterns developed over the grassland site. These patterns result in spatially variable turbulent heat fluxes. The model comparison indicates that both models are able to derive ET estimates that compare well with EC measurements under these conditions. However, the two-source model, with a more complex treatment of the energy and surface temperature partitioning between the soil and vegetation, outperformed the simpler one-source model in estimating sensible and latent heat fluxes. This is consistent with findings from prior studies. For the one-source model, a time-variant expression of the adjustment parameter (to account for the difference between aerodynamic and radiometric temperature) that depends on the surface-to-air temperature gradient yielded the best agreement with EC measurements. This study showed that the applied UAV system equipped with a dual-camera set-up allows for the acquisition of thermal imagery with high spatial and temporal resolution that illustrates the small-scale heterogeneity of thermal surface properties. The UAV-based thermal imagery therefore provides the means for analysing patterns of LST and other surface properties with a high level of detail that cannot be obtained by traditional remote sensing methods.

Optimization and development of solar power system under diffused sunlight condition in rural areas with supercapacitor integration

NASA Astrophysics Data System (ADS)

Castelino, Roystan V.; Jana, Suman; Kumhar, Rajesh; Singh, Niraj K.

2018-04-01

The simulation and hardware based experiment in this presented paper shows a possibility of increasing the reliability of solar power under diffused condition by using super capacitor module. This experimental setup can be used in those areas where the sun light is intermittent and under the diffused radiation condition. Due to diffused radiation, solar PV cells operate very poorly, but by using this setup the power efficiency can be increased greatly. Sometimes dependent numerical models are used to measure the voltage and current response of the hardware setup in MATLAB Simulink based environment. To convert the scattered solar radiation to electricity using the conventional solar PV module, batteries have to be linked with the rapid charging or discharging device like super capacitor module. The conventional method consists of a charging circuit, which dumps the power if the voltage is below certain voltage level, but this circuit utilizes the entire power even if the voltage is low under diffused sun light conditions. There is no power dumped in this circuit. The efficiency and viability of this labscale experimental setup can be examined with further experiment and industrial model.

Extension of an assessment model of ship traffic exhaust emissions for particulate matter and carbon monoxide

NASA Astrophysics Data System (ADS)

Jalkanen, J.-P.; Johansson, L.; Kukkonen, J.; Brink, A.; Kalli, J.; Stipa, T.

2011-08-01

A method is presented for the evaluation of the exhaust emissions of marine traffic, based on the messages provided by the Automatic Identification System (AIS), which enable the positioning of ship emissions with a high spatial resolution (typically a few metres). The model also takes into account the detailed technical data of each individual vessel. The previously developed model was applicable for evaluating the emissions of NOx, SOx and CO2. This paper addresses a substantial extension of the modelling system, to allow also for the mass-based emissions of particulate matter (PM) and carbon monoxide (CO). The presented Ship Traffic Emissions Assessment Model (STEAM2) allows for the influences of accurate travel routes and ship speed, engine load, fuel sulphur content, multiengine setups, abatement methods and waves. We address in particular the modeling of the influence on the emissions of both engine load and the sulphur content of the fuel. The presented methodology can be used to evaluate the total PM emissions, and those of organic carbon, elemental carbon, ash and hydrated sulphate. We have evaluated the performance of the extended model against available experimental data on engine power, fuel consumption and the composition-resolved emissions of PM. As example results, the geographical distributions of the emissions of PM and CO are presented for the marine regions surrounding the Danish Straits.

Comparison of optical vortex detection methods for use with a Shack-Hartmann wavefront sensor.

PubMed

Murphy, Kevin; Dainty, Chris

2012-02-27

In this paper we compare experimentally two methods of detecting optical vortices from Shack-Hartmann wavefront sensor (SHWFS) data, the vortex potential and the contour sum methods. The experimental setup uses a spatial light modulator (SLM) to generate turbulent fields with vortices. In the experiment, many fields are generated and detected by a SHWFS, and data is analysed by the two vortex detection methods. We conclude that the vortex potential method is more successful in locating vortices in these fields.

Holographic imaging with a Shack-Hartmann wavefront sensor.

PubMed

Gong, Hai; Soloviev, Oleg; Wilding, Dean; Pozzi, Paolo; Verhaegen, Michel; Vdovin, Gleb

2016-06-27

A high-resolution Shack-Hartmann wavefront sensor has been used for coherent holographic imaging, by computer reconstruction and propagation of the complex field in a lensless imaging setup. The resolution of the images obtained with the experimental data is in a good agreement with the diffraction theory. Although a proper calibration with a reference beam improves the image quality, the method has a potential for reference-less holographic imaging with spatially coherent monochromatic and narrowband polychromatic sources in microscopy and imaging through turbulence.

Nonintrusive Diagnostic Strategies for Arcjet Stream Characterization

DTIC Science & Technology

2000-04-01

lowpassfiltr. Te aco hinationd of8-0 .3o no M chromaitor sa rta ...... ecdeutcrium lamp’"._• 94 nom Fiber 4- ugt ap Fig. 8. Experimental setup for electrode e...and C. Park, "Stagnation Point Heat lish the validity of this hypothesis, but the spatially Transfer Rate in Nitrogen Plasma Flows: Theory 3B-35 and...R. Loudon, The Quantum Theory of Light, 2nd Ed., Seattle, WA, June, (1990). Clarendon Press, Oxford, pp. 344-347, (1986). 40. W. J. Marinelli, W. J

A nested observation and model approach to non linear groundwater surface water interactions.

NASA Astrophysics Data System (ADS)

van der Velde, Y.; Rozemeijer, J. C.; de Rooij, G. H.

2009-04-01

Surface water quality measurements in The Netherlands are scattered in time and space. Therefore, water quality status and its variations and trends are difficult to determine. In order to reach the water quality goals according to the European Water Framework Directive, we need to improve our understanding of the dynamics of surface water quality and the processes that affect it. In heavily drained lowland catchment groundwater influences the discharge towards the surface water network in many complex ways. Especially a strong seasonal contracting and expanding system of discharging ditches and streams affects discharge and solute transport. At a tube drained field site the tube drain flux and the combined flux of all other flow routes toward a stretch of 45 m of surface water have been measured for a year. Also the groundwater levels at various locations in the field and the discharge at two nested catchment scales have been monitored. The unique reaction of individual flow routes on rainfall events at the field site allowed us to separate the discharge at a 4 ha catchment and at a 6 km2 into flow route contributions. The results of this nested experimental setup combined with the results of a distributed hydrological model has lead to the formulation of a process model approach that focuses on the spatial variability of discharge generation driven by temporal and spatial variations in groundwater levels. The main idea of this approach is that discharge is not generated by catchment average storages or groundwater heads, but is mainly generated by points scale extremes i.e. extreme low permeability, extreme high groundwater heads or extreme low surface elevations, all leading to catchment discharge. We focused on describing the spatial extremes in point scale storages and this led to a simple and measurable expression that governs the non-linear groundwater surface water interaction. We will present the analysis of the field site data to demonstrate the potential of nested-scale, high frequency observations. The distributed hydrological model results will be used to show transient catchment scale relations between groundwater levels and discharges. These analyses lead to a simple expression that can describe catchment scale groundwater surface water interactions.

Earth System Chemistry integrated Modelling (ESCiMo) with the Modular Earth Submodel System (MESSy) version 2.51

NASA Astrophysics Data System (ADS)

Jöckel, Patrick; Tost, Holger; Pozzer, Andrea; Kunze, Markus; Kirner, Oliver; Brenninkmeijer, Carl A. M.; Brinkop, Sabine; Cai, Duy S.; Dyroff, Christoph; Eckstein, Johannes; Frank, Franziska; Garny, Hella; Gottschaldt, Klaus-Dirk; Graf, Phoebe; Grewe, Volker; Kerkweg, Astrid; Kern, Bastian; Matthes, Sigrun; Mertens, Mariano; Meul, Stefanie; Neumaier, Marco; Nützel, Matthias; Oberländer-Hayn, Sophie; Ruhnke, Roland; Runde, Theresa; Sander, Rolf; Scharffe, Dieter; Zahn, Andreas

2016-03-01

Three types of reference simulations, as recommended by the Chemistry-Climate Model Initiative (CCMI), have been performed with version 2.51 of the European Centre for Medium-Range Weather Forecasts - Hamburg (ECHAM)/Modular Earth Submodel System (MESSy) Atmospheric Chemistry (EMAC) model: hindcast simulations (1950-2011), hindcast simulations with specified dynamics (1979-2013), i.e. nudged towards ERA-Interim reanalysis data, and combined hindcast and projection simulations (1950-2100). The manuscript summarizes the updates of the model system and details the different model set-ups used, including the on-line calculated diagnostics. Simulations have been performed with two different nudging set-ups, with and without interactive tropospheric aerosol, and with and without a coupled ocean model. Two different vertical resolutions have been applied. The on-line calculated sources and sinks of reactive species are quantified and a first evaluation of the simulation results from a global perspective is provided as a quality check of the data. The focus is on the intercomparison of the different model set-ups. The simulation data will become publicly available via CCMI and the Climate and Environmental Retrieval and Archive (CERA) database of the German Climate Computing Centre (DKRZ). This manuscript is intended to serve as an extensive reference for further analyses of the Earth System Chemistry integrated Modelling (ESCiMo) simulations.

Torque Loss After Miniscrew Placement: An In-Vitro Study Followed by a Clinical Trial.

PubMed

Migliorati, Marco; Drago, Sara; Barberis, Fabrizio; Schiavetti, Irene; Dalessandri, Domenico; Benedicenti, Stefano; Biavati, Armando Silvestrini

2016-01-01

To evaluate torque loss a week after insertion, both in an in vivo and an in vitro experimental setup were designed. In the in vivo setup a total of 29 miniscrews were placed in 20 patients who underwent orthodontic treatment. Maximum insertion torque (MIT) was evaluated at insertion time (T1). A week later, insertion torque was measured again by applying a quarter turn (T2); no load was applied on the screw during the first week. In the in vitro setup a total of 20 miniscrews were placed in pig rib bone samples. MIT was evaluated at insertion time (T1). Bone samples were kept in saline solution and controlled environment for a week during which the solution was refreshed every day. Afterwards, torque was measured again by applying a quarter turn (T2). The comparison of MIT over time was done calculating the percentage difference of the torque values between pre- and post-treatment and using the parametric two independent samples t-test or the non-parametric Mann-Whitney test. After a week unloaded miniscrews showed a mean loss of rotational torque of 36.3% and 40.9% in in vitro and in in vivo conditions, respectively. No statistical differences were found between the two different setups. Torque loss was observed after the first week in both study models; in vitro experimental setup provided a reliable study model for studying torque variation during the first week after insertion.

Torque Loss After Miniscrew Placement: An In-Vitro Study Followed by a Clinical Trial

PubMed Central

Migliorati, Marco; Drago, Sara; Barberis, Fabrizio; Schiavetti, Irene; Dalessandri, Domenico; Benedicenti, Stefano; Biavati, Armando Silvestrini

2016-01-01

To evaluate torque loss a week after insertion, both in an in vivo and an in vitro experimental setup were designed. In the in vivo setup a total of 29 miniscrews were placed in 20 patients who underwent orthodontic treatment. Maximum insertion torque (MIT) was evaluated at insertion time (T1). A week later, insertion torque was measured again by applying a quarter turn (T2); no load was applied on the screw during the first week. In the in vitro setup a total of 20 miniscrews were placed in pig rib bone samples. MIT was evaluated at insertion time (T1). Bone samples were kept in saline solution and controlled environment for a week during which the solution was refreshed every day. Afterwards, torque was measured again by applying a quarter turn (T2). The comparison of MIT over time was done calculating the percentage difference of the torque values between pre- and post-treatment and using the parametric two independent samples t-test or the non-parametric Mann–Whitney test. After a week unloaded miniscrews showed a mean loss of rotational torque of 36.3% and 40.9% in in vitro and in in vivo conditions, respectively. No statistical differences were found between the two different setups. Torque loss was observed after the first week in both study models; in vitro experimental setup provided a reliable study model for studying torque variation during the first week after insertion. PMID:27386011

Empirical parameterization of setup, swash, and runup

USGS Publications Warehouse

Stockdon, H.F.; Holman, R.A.; Howd, P.A.; Sallenger, A.H.

2006-01-01

Using shoreline water-level time series collected during 10 dynamically diverse field experiments, an empirical parameterization for extreme runup, defined by the 2% exceedence value, has been developed for use on natural beaches over a wide range of conditions. Runup, the height of discrete water-level maxima, depends on two dynamically different processes; time-averaged wave setup and total swash excursion, each of which is parameterized separately. Setup at the shoreline was best parameterized using a dimensional form of the more common Iribarren-based setup expression that includes foreshore beach slope, offshore wave height, and deep-water wavelength. Significant swash can be decomposed into the incident and infragravity frequency bands. Incident swash is also best parameterized using a dimensional form of the Iribarren-based expression. Infragravity swash is best modeled dimensionally using offshore wave height and wavelength and shows no statistically significant linear dependence on either foreshore or surf-zone slope. On infragravity-dominated dissipative beaches, the magnitudes of both setup and swash, modeling both incident and infragravity frequency components together, are dependent only on offshore wave height and wavelength. Statistics of predicted runup averaged over all sites indicate a - 17 cm bias and an rms error of 38 cm: the mean observed runup elevation for all experiments was 144 cm. On intermediate and reflective beaches with complex foreshore topography, the use of an alongshore-averaged beach slope in practical applications of the runup parameterization may result in a relative runup error equal to 51% of the fractional variability between the measured and the averaged slope.

An evaluation of different setups for simulating lighting characteristics

NASA Astrophysics Data System (ADS)

Salters, Bart; Murdoch, Michael; Sekulovksi, Dragan; Chen, Shih-Han; Seuntiens, Pieter

2012-03-01

The advance of technology continuously enables new luminaire designs and concepts. Evaluating such designs has traditionally been done using actual prototypes, in a real environment. The iterations needed to build, verify, and improve luminaire designs incur substantial costs and slow down the design process. A more attractive way is to evaluate designs using simulations, as they can be made cheaper and quicker for a wider variety of prototypes. However, the value of such simulations is determined by how closely they predict the outcome of actual perception experiments. In this paper, we discuss an actual perception experiment including several lighting settings in a normal office environment. The same office environment also has been modeled using different software tools, and photo-realistic renderings have been created of these models. These renderings were subsequently processed using various tonemapping operators in preparation for display. The total imaging chain can be considered a simulation setup, and we have executed several perception experiments on different setups. Our real interest is in finding which imaging chain gives us the best result, or in other words, which of them yields the closest match between virtual and real experiment. To answer this question, first of all an answer has to be found to the question, "which simulation setup matches the real world best?" As there is no unique, widely accepted measure to describe the performance of a certain setup, we consider a number of options and discuss the reasoning behind them along with their advantages and disadvantages.

Uncertainty quantification in operational modal analysis with stochastic subspace identification: Validation and applications

NASA Astrophysics Data System (ADS)

Reynders, Edwin; Maes, Kristof; Lombaert, Geert; De Roeck, Guido

2016-01-01

Identified modal characteristics are often used as a basis for the calibration and validation of dynamic structural models, for structural control, for structural health monitoring, etc. It is therefore important to know their accuracy. In this article, a method for estimating the (co)variance of modal characteristics that are identified with the stochastic subspace identification method is validated for two civil engineering structures. The first structure is a damaged prestressed concrete bridge for which acceleration and dynamic strain data were measured in 36 different setups. The second structure is a mid-rise building for which acceleration data were measured in 10 different setups. There is a good quantitative agreement between the predicted levels of uncertainty and the observed variability of the eigenfrequencies and damping ratios between the different setups. The method can therefore be used with confidence for quantifying the uncertainty of the identified modal characteristics, also when some or all of them are estimated from a single batch of vibration data. Furthermore, the method is seen to yield valuable insight in the variability of the estimation accuracy from mode to mode and from setup to setup: the more informative a setup is regarding an estimated modal characteristic, the smaller is the estimated variance.

The virtual slice setup.

PubMed

Lytton, William W; Neymotin, Samuel A; Hines, Michael L

2008-06-30

In an effort to design a simulation environment that is more similar to that of neurophysiology, we introduce a virtual slice setup in the NEURON simulator. The virtual slice setup runs continuously and permits parameter changes, including changes to synaptic weights and time course and to intrinsic cell properties. The virtual slice setup permits shocks to be applied at chosen locations and activity to be sampled intra- or extracellularly from chosen locations. By default, a summed population display is shown during a run to indicate the level of activity and no states are saved. Simulations can run for hours of model time, therefore it is not practical to save all of the state variables. These, in any case, are primarily of interest at discrete times when experiments are being run: the simulation can be stopped momentarily at such times to save activity patterns. The virtual slice setup maintains an automated notebook showing shocks and parameter changes as well as user comments. We demonstrate how interaction with a continuously running simulation encourages experimental prototyping and can suggest additional dynamical features such as ligand wash-in and wash-out-alternatives to typical instantaneous parameter change. The virtual slice setup currently uses event-driven cells and runs at approximately 2 min/h on a laptop.

Fiber array based hyperspectral Raman imaging for chemical selective analysis of malaria-infected red blood cells.

PubMed

Brückner, Michael; Becker, Katja; Popp, Jürgen; Frosch, Torsten

2015-09-24

A new setup for Raman spectroscopic wide-field imaging is presented. It combines the advantages of a fiber array based spectral translator with a tailor-made laser illumination system for high-quality Raman chemical imaging of sensitive biological samples. The Gaussian-like intensity distribution of the illuminating laser beam is shaped by a square-core optical multimode fiber to a top-hat profile with very homogeneous intensity distribution to fulfill the conditions of Koehler. The 30 m long optical fiber and an additional vibrator efficiently destroy the polarization and coherence of the illuminating light. This homogeneous, incoherent illumination is an essential prerequisite for stable quantitative imaging of complex biological samples. The fiber array translates the two-dimensional lateral information of the Raman stray light into separated spectral channels with very high contrast. The Raman image can be correlated with a corresponding white light microscopic image of the sample. The new setup enables simultaneous quantification of all Raman spectra across the whole spatial area with very good spectral resolution and thus outperforms other Raman imaging approaches based on scanning and tunable filters. The unique capabilities of the setup for fast, gentle, sensitive, and selective chemical imaging of biological samples were applied for automated hemozoin analysis. A special algorithm was developed to generate Raman images based on the hemozoin distribution in red blood cells without any influence from other Raman scattering. The new imaging setup in combination with the robust algorithm provides a novel, elegant way for chemical selective analysis of the malaria pigment hemozoin in early ring stages of Plasmodium falciparum infected erythrocytes. Copyright © 2015 Elsevier B.V. All rights reserved.

Interaction with gravitropism, reversibility and lateral movements of phototropically stimulated potato shoots.

PubMed

Vinterhalter, D; Savić, J; Stanišić, M; Jovanović, Ž; Vinterhalter, B

2016-07-01

Phototropic (PT) and gravitropic (GT) bending are the two major tropic movements that determine the spatial position of potato shoots. We studied PT bending of potato plantlets grown under long-day photoperiods in several prearranged position setups providing different interactions with the GT response. Starting with the standard PT stimulation setup composed of unilateral irradiation of vertically positioned shoots, experiments were also done in antagonistic and synergistic setups and in treatments with horizontal displacement of the light source. In the standard setup, PT bending suppressed the GT bending, which could occur only if the PT stimulation was cancelled. The antagonistic position, with phototropism and gravitropism attempting to bend shoots in opposite directions, showed phototropism and gravitropism as independent bending events with the outcome varying throughout the day reflecting diurnal changes in the competence of individual tropic components. Whilst gravitropism was constant, phototropism had a marked daily fluctuation of its magnitude with a prominent morning maximum starting an hour after the dawn in the growth room and lasting for the next 6 h. When phototropism and gravitropism were aligned in a synergistic position, stimulating shoot bending in the same direction, there was little quantitative addition of their individual effects. The long period of morning PT bending maximum enabled multiple PT bending events to be conducted in succession, each one preceded by a separate lag phase. Studies of secondary PT events showed that potato plantlets can follow and adjust their shoot position in response to both vertical and horizontal movements of a light source. PT bending was reversible, since the 180° horizontal change of a blue light (BL) source position resulted in reversal of bending direction after a 20-min-long lag phase.

Improved human observer performance in digital reconstructed radiograph verification in head and neck cancer radiotherapy.

PubMed

Sturgeon, Jared D; Cox, John A; Mayo, Lauren L; Gunn, G Brandon; Zhang, Lifei; Balter, Peter A; Dong, Lei; Awan, Musaddiq; Kocak-Uzel, Esengul; Mohamed, Abdallah Sherif Radwan; Rosenthal, David I; Fuller, Clifton David

2015-10-01

Digitally reconstructed radiographs (DRRs) are routinely used as an a priori reference for setup correction in radiotherapy. The spatial resolution of DRRs may be improved to reduce setup error in fractionated radiotherapy treatment protocols. The influence of finer CT slice thickness reconstruction (STR) and resultant increased resolution DRRs on physician setup accuracy was prospectively evaluated. Four head and neck patient CT-simulation images were acquired and used to create DRR cohorts by varying STRs at 0.5, 1, 2, 2.5, and 3 mm. DRRs were displaced relative to a fixed isocenter using 0-5 mm random shifts in the three cardinal axes. Physician observers reviewed DRRs of varying STRs and displacements and then aligned reference and test DRRs replicating daily KV imaging workflow. A total of 1,064 images were reviewed by four blinded physicians. Observer errors were analyzed using nonparametric statistics (Friedman's test) to determine whether STR cohorts had detectably different displacement profiles. Post hoc bootstrap resampling was applied to evaluate potential generalizability. The observer-based trial revealed a statistically significant difference between cohort means for observer displacement vector error ([Formula: see text]) and for [Formula: see text]-axis [Formula: see text]. Bootstrap analysis suggests a 15% gain in isocenter translational setup error with reduction of STR from 3 mm to [Formula: see text]2 mm, though interobserver variance was a larger feature than STR-associated measurement variance. Higher resolution DRRs generated using finer CT scan STR resulted in improved observer performance at shift detection and could decrease operator-dependent geometric error. Ideally, CT STRs [Formula: see text]2 mm should be utilized for DRR generation in the head and neck.

A novel Brain Computer Interface for classification of social joint attention in autism and comparison of 3 experimental setups: A feasibility study.

PubMed

Amaral, Carlos P; Simões, Marco A; Mouga, Susana; Andrade, João; Castelo-Branco, Miguel

2017-10-01

We present a novel virtual-reality P300-based Brain Computer Interface (BCI) paradigm using social cues to direct the focus of attention. We combined interactive immersive virtual-reality (VR) technology with the properties of P300 signals in a training tool which can be used in social attention disorders such as autism spectrum disorder (ASD). We tested the novel social attention training paradigm (P300-based BCI paradigm for rehabilitation of joint-attention skills) in 13 healthy participants, in 3 EEG systems. The more suitable setup was tested online with 4 ASD subjects. Statistical accuracy was assessed based on the detection of P300, using spatial filtering and a Naïve-Bayes classifier. We compared: 1 - g.Mobilab+ (active dry-electrodes, wireless transmission); 2 - g.Nautilus (active electrodes, wireless transmission); 3 - V-Amp with actiCAP Xpress dry-electrodes. Significant statistical classification was achieved in all systems. g.Nautilus proved to be the best performing system in terms of accuracy in the detection of P300, preparation time, speed and reported comfort. Proof of concept tests in ASD participants proved that this setup is feasible for training joint attention skills in ASD. This work provides a unique combination of 'easy-to-use' BCI systems with new technologies such as VR to train joint-attention skills in autism. Our P300 BCI paradigm is feasible for future Phase I/II clinical trials to train joint-attention skills, with successful classification within few trials, online in ASD participants. The g.Nautilus system is the best performing one to use with the developed BCI setup. Copyright © 2017 Elsevier B.V. All rights reserved.

20170312 - In Silico Dynamics: computer simulation in a ...

EPA Pesticide Factsheets

Abstract: Utilizing cell biological information to predict higher order biological processes is a significant challenge in predictive toxicology. This is especially true for highly dynamical systems such as the embryo where morphogenesis, growth and differentiation require precisely orchestrated interactions between diverse cell populations. In patterning the embryo, genetic signals setup spatial information that cells then translate into a coordinated biological response. This can be modeled as ‘biowiring diagrams’ representing genetic signals and responses. Because the hallmark of multicellular organization resides in the ability of cells to interact with one another via well-conserved signaling pathways, multiscale computational (in silico) models that enable these interactions provide a platform to translate cellular-molecular lesions perturbations into higher order predictions. Just as ‘the Cell’ is the fundamental unit of biology so too should it be the computational unit (‘Agent’) for modeling embryogenesis. As such, we constructed multicellular agent-based models (ABM) with ‘CompuCell3D’ (www.compucell3d.org) to simulate kinematics of complex cell signaling networks and enable critical tissue events for use in predictive toxicology. Seeding the ABMs with HTS/HCS data from ToxCast demonstrated the potential to predict, quantitatively, the higher order impacts of chemical disruption at the cellular or bioche

In Silico Dynamics: computer simulation in a Virtual Embryo ...

EPA Pesticide Factsheets

Abstract: Utilizing cell biological information to predict higher order biological processes is a significant challenge in predictive toxicology. This is especially true for highly dynamical systems such as the embryo where morphogenesis, growth and differentiation require precisely orchestrated interactions between diverse cell populations. In patterning the embryo, genetic signals setup spatial information that cells then translate into a coordinated biological response. This can be modeled as ‘biowiring diagrams’ representing genetic signals and responses. Because the hallmark of multicellular organization resides in the ability of cells to interact with one another via well-conserved signaling pathways, multiscale computational (in silico) models that enable these interactions provide a platform to translate cellular-molecular lesions perturbations into higher order predictions. Just as ‘the Cell’ is the fundamental unit of biology so too should it be the computational unit (‘Agent’) for modeling embryogenesis. As such, we constructed multicellular agent-based models (ABM) with ‘CompuCell3D’ (www.compucell3d.org) to simulate kinematics of complex cell signaling networks and enable critical tissue events for use in predictive toxicology. Seeding the ABMs with HTS/HCS data from ToxCast demonstrated the potential to predict, quantitatively, the higher order impacts of chemical disruption at the cellular or biochemical level. This is demonstrate

Extensions of the Ferry shear wave model for active linear and nonlinear microrheology

PubMed Central

Mitran, Sorin M.; Forest, M. Gregory; Yao, Lingxing; Lindley, Brandon; Hill, David B.

2009-01-01

The classical oscillatory shear wave model of Ferry et al. [J. Polym. Sci. 2:593-611, (1947)] is extended for active linear and nonlinear microrheology. In the Ferry protocol, oscillation and attenuation lengths of the shear wave measured from strobe photographs determine storage and loss moduli at each frequency of plate oscillation. The microliter volumes typical in biology require modifications of experimental method and theory. Microbead tracking replaces strobe photographs. Reflection from the top boundary yields counterpropagating modes which are modeled here for linear and nonlinear viscoelastic constitutive laws. Furthermore, bulk imposed strain is easily controlled, and we explore the onset of normal stress generation and shear thinning using nonlinear viscoelastic models. For this paper, we present the theory, exact linear and nonlinear solutions where possible, and simulation tools more generally. We then illustrate errors in inverse characterization by application of the Ferry formulas, due to both suppression of wave reflection and nonlinearity, even if there were no experimental error. This shear wave method presents an active and nonlinear analog of the two-point microrheology of Crocker et al. [Phys. Rev. Lett. 85: 888 - 891 (2000)]. Nonlocal (spatially extended) deformations and stresses are propagated through a small volume sample, on wavelengths long relative to bead size. The setup is ideal for exploration of nonlinear threshold behavior. PMID:20011614

Comparison of Fiber Optic and Conduit Attenuated Total Reflection (ATR) Fourier Transform Infrared (FT-IR) Setup for In-Line Fermentation Monitoring.

PubMed

Koch, Cosima; Posch, Andreas E; Herwig, Christoph; Lendl, Bernhard

2016-12-01

The performance of a fiber optic and an optical conduit in-line attenuated total reflection mid-infrared (IR) probe during in situ monitoring of Penicillium chrysogenum fermentation were compared. The fiber optic probe was connected to a sealed, portable, Fourier transform infrared (FT-IR) process spectrometer via a plug-and-play interface. The optical conduit, on the other hand, was connected to a FT-IR process spectrometer via a knuckled probe with mirrors that had to be adjusted prior to each fermentation, which were purged with dry air. Penicillin V (PenV) and its precursor phenoxyacetic acid (POX) concentrations were determined by online high-performance liquid chromatography and the obtained concentrations were used as reference to build partial least squares regression models. Cross-validated root-mean-square errors of prediction were found to be 0.2 g L -1 (POX) and 0.19 g L -1 (PenV) for the fiber optic setup and 0.17 g L -1 (both POX and PenV) for the conduit setup. Higher noise-levels and spectrum-to-spectrum variations of the fiber optic setup lead to higher noise of estimated (i.e., unknown) POX and PenV concentrations than was found for the conduit setup. It seems that trade-off has to be made between ease of handling (fiber optic setup) and measurement accuracy (optical conduit setup) when choosing one of these systems for bioprocess monitoring. © The Author(s) 2016.

Novel Electrochemical Raman Spectroscopy Enabled by Water Immersion Objective.

PubMed

Zeng, Zhi-Cong; Hu, Shu; Huang, Sheng-Chao; Zhang, Yue-Jiao; Zhao, Wei-Xing; Li, Jian-Feng; Jiang, Chaoyang; Ren, Bin

2016-10-04

Electrochemical Raman spectroscopy is a powerful molecular level diagnostic technique for in situ investigation of adsorption and reactions on various material surfaces. However, there is still a big room to improve the optical path to meet the increasing request of higher detection sensitivity and spatial resolution. Herein, we proposed a novel electrochemical Raman setup based on a water immersion objective. It dramatically reduces mismatch of the refractive index in the light path. Consequently, significant improvement in detection sensitivity and spatial resolution has been achieved from both Zemax simulation and the experimental results. Furthermore, the thickness of electrolyte layer could be expanded to 2 mm without any influence on the signal collection. Such a thick electrolyte layer allows a much normal electrochemical response during the spectroelectrochemical investigations of the methanol oxidation.

Polymer mobilization and drug release during tablet swelling. A 1H NMR and NMR microimaging study.

PubMed

Dahlberg, Carina; Fureby, Anna; Schuleit, Michael; Dvinskikh, Sergey V; Furó, István

2007-09-26

The objective of this study was to investigate the swelling characteristics of a hydroxypropyl methylcellulose (HPMC) matrix incorporating the hydrophilic drug antipyrine. We have used this matrix to introduce a novel analytical method, which allows us to obtain within one experimental setup information about the molecular processes of the polymer carrier and its impact on drug release. Nuclear magnetic resonance (NMR) imaging revealed in situ the swelling behavior of tablets when exposed to water. By using deuterated water, the spatial distribution and molecular dynamics of HPMC and their kinetics during swelling could be observed selectively. In parallel, NMR spectroscopy provided the concentration of the drug released into the aqueous phase. We find that both swelling and release are diffusion controlled. The ability of monitoring those two processes using the same experimental setup enables mapping their interconnection, which points on the importance and potential of this analytical technique for further application in other drug delivery forms.

Patient motion tracking in the presence of measurement errors.

PubMed

Haidegger, Tamás; Benyó, Zoltán; Kazanzides, Peter

2009-01-01

The primary aim of computer-integrated surgical systems is to provide physicians with superior surgical tools for better patient outcome. Robotic technology is capable of both minimally invasive surgery and microsurgery, offering remarkable advantages for the surgeon and the patient. Current systems allow for sub-millimeter intraoperative spatial positioning, however certain limitations still remain. Measurement noise and unintended changes in the operating room environment can result in major errors. Positioning errors are a significant danger to patients in procedures involving robots and other automated devices. We have developed a new robotic system at the Johns Hopkins University to support cranial drilling in neurosurgery procedures. The robot provides advanced visualization and safety features. The generic algorithm described in this paper allows for automated compensation of patient motion through optical tracking and Kalman filtering. When applied to the neurosurgery setup, preliminary results show that it is possible to identify patient motion within 700 ms, and apply the appropriate compensation with an average of 1.24 mm positioning error after 2 s of setup time.

Reduction of Helicity-Dependent Instrumental Laser Intensity Asymmetries

NASA Astrophysics Data System (ADS)

Burtwistle, Samantha; Dreiling, Joan; Gay, Timothy

2014-05-01

We present a new optical system that greatly reduces helicity-dependent instrumental intensity asymmetries. The optical setup is similar to that described in Fabrikant et al., where two beams with orthogonal linear polarizations are sent through a chopper, allowing only one beam to pass through the optical system at a time. The two temporally-separated beams are then spatially recombined. We now use a system, with a second active polarization changing element, that is analogous to that described in Gay and Dunning, which compensates for false asymmetries in Mott polarimetry. In our setup, the orthogonal linear polarizations are now circularly polarized by a Pockels cell switching between a retardance of + λ /4 and - λ/4 at the same frequency as the chopper, but with a 90-degree phase shift. Using this method, we have been able to control the standard deviation of the mean of our asymmetries, as measured by a photodiode with lock-in signal processing, to 3*10-8.

Preliminary studies of enhanced contrast radiography in anatomy and embryology of insects with Elettra synchrotron light

NASA Astrophysics Data System (ADS)

Hönnicke, M. G.; Foerster, L. A.; Navarro-Silva, M. A.; Menk, R.-H.; Rigon, L.; Cusatis, C.

2005-08-01

Enhanced contrast X-ray imaging is achieved by exploiting the real part of the refraction index, which is responsible for the phase shifts, in addition to the imaginary part, which is responsible for the absorption. Such techniques are called X-ray phase contrast imaging. An analyzer-based X-ray phase contrast imaging set-up with Diffraction Enhanced Imaging processing (DEI) were used for preliminary studies in anatomy and embryology of insects. Parasitized stinkbug and moth eggs used as control agents of pests in vegetables and adult stinkbugs and mosquitoes ( Aedes aegypti) were used as samples. The experimental setup was mounted in the SYRMEP beamline at ELETTRA. Images were obtained using a high spatial resolution CCD detector (pixel size 14×14 μm 2) coupled with magnifying optics. Analyzer-based X-ray phase contrast images (PCI) and edge detection images show contrast and details not observed with conventional synchrotron radiography and open the possibility for future study in the embryonic development of insects.

BioPhotonics workstation: A versatile setup for simultaneous optical manipulation, heat stress, and intracellular pH measurements of a live yeast cell

NASA Astrophysics Data System (ADS)

Aabo, Thomas; Banás, Andrew Raphael; Glückstad, Jesper; Siegumfeldt, Henrik; Arneborg, Nils

2011-08-01

In this study we have modified the BioPhotonics workstation (BWS), which allows for using long working distance objective for optical trapping, to include traditional epi-fluorescence microscopy, using the trapping objectives. We have also added temperature regulation of sample stage, allowing for fast temperature variations while trapping. Using this modified BWS setup, we investigated the internal pH (pHi) response and membrane integrity of an optically trapped Saccharomyces cerevisiae cell at 5 mW subject to increasing temperatures. The pHi of the cell is obtained from the emission of 5-(and-6)-carboxyfluorescein diacetate, succinimidyl ester, at 435 and 485 nm wavelengths, while the permeability is indicated by the fluorescence of propidium iodide. We present images mapping the pHi and permeability of the cell at different temperatures and with enough spatial resolution to localize these attributes within the cell. The combined capability of optical trapping, fluorescence microscopy and temperature regulation offers a versatile tool for biological research.

3D digital image correlation using single color camera pseudo-stereo system

NASA Astrophysics Data System (ADS)

Li, Junrui; Dan, Xizuo; Xu, Wan; Wang, Yonghong; Yang, Guobiao; Yang, Lianxiang

2017-10-01

Three dimensional digital image correlation (3D-DIC) has been widely used by industry to measure the 3D contour and whole-field displacement/strain. In this paper, a novel single color camera 3D-DIC setup, using a reflection-based pseudo-stereo system, is proposed. Compared to the conventional single camera pseudo-stereo system, which splits the CCD sensor into two halves to capture the stereo views, the proposed system achieves both views using the whole CCD chip and without reducing the spatial resolution. In addition, similarly to the conventional 3D-DIC system, the center of the two views stands in the center of the CCD chip, which minimizes the image distortion relative to the conventional pseudo-stereo system. The two overlapped views in the CCD are separated by the color domain, and the standard 3D-DIC algorithm can be utilized directly to perform the evaluation. The system's principle and experimental setup are described in detail, and multiple tests are performed to validate the system.

Cross-Section Measurements via the Activation Technique at the Cologne Clover Counting Setup

NASA Astrophysics Data System (ADS)

Heim, Felix; Mayer, Jan; Netterdon, Lars; Scholz, Philipp; Zilges, Andreas

The activation technique is a widely used method for the determination of cross-section values for charged-particle induced reactions at astrophysically relevant energies. Since network calculations of nucleosynthesis processes often depend on reaction rates calculated in the scope of the Hauser-Feshbach statistical model, these cross-sections can be used to improve the nuclear-physics input-parameters like optical-model potentials (OMP), γ-ray strength functions, and nuclear level densities. In order to extend the available experimental database, the 108Cd(α, n)111Sn reaction cross section was investigated at ten energies between 10.2 and 13.5 MeV. As this reaction at these energies is almost only sensitive on the α-decay width, the results were compared to statistical model calculations using different models for the α-OMP. The irradiation as well as the consecutive γ-ray counting were performed at the Institute for Nuclear Physics of the University of Cologne using the 10 MV FN-Tandem accelerator and the Cologne Clover Counting Setup. This setup consists of two clover- type high purity germanium (HPGe) detectors in a close face-to-face geometry to cover a solid angle of almost 4π.

Forecasting the impact of storm waves and sea-level rise on Midway Atoll and Laysan Island within the Papahānaumokuākea Marine National Monument—a comparison of passive versus dynamic inundation models

USGS Publications Warehouse

Storlazzi, Curt D.; Berkowitz, Paul; Reynolds, Michelle H.; Logan, Joshua B.

2013-01-01

Two inundation events in 2011 underscored the potential for elevated water levels to damage infrastructure and affect terrestrial ecosystems on the low-lying Northwestern Hawaiian Islands in the Papahānaumokuākea Marine National Monument. The goal of this study was to compare passive "bathtub" inundation models based on geographic information systems (GIS) to those that include dynamic water levels caused by wave-induced set-up and run-up for two end-member island morphologies: Midway, a classic atoll with islands on the shallow (2-8 m) atoll rim and a deep, central lagoon; and Laysan, which is characterized by a deep (20-30 m) atoll rim and an island at the center of the atoll. Vulnerability to elevated water levels was assessed using hindcast wind and wave data to drive coupled physics-based numerical wave, current, and water-level models for the atolls. The resulting model data were then used to compute run-up elevations using a parametric run-up equation under both present conditions and future sea-level-rise scenarios. In both geomorphologies, wave heights and wavelengths adjacent to the island shorelines increased more than three times and four times, respectively, with increasing values of sea-level rise, as more deep-water wave energy could propagate over the atoll rim and larger wind-driven waves could develop on the atoll. Although these increases in water depth resulted in decreased set-up along the islands’ shorelines, the larger wave heights and longer wavelengths due to sea-level rise increased the resulting wave-induced run-up. Run-up values were spatially heterogeneous and dependent on the direction of incident wave direction, bathymetry, and island configuration. Island inundation was modeled to increase substantially when wave-driven effects were included, suggesting that inundation and impacts to infrastructure and terrestrial habitats will occur at lower values of predicted sea-level rise, and thus sooner in the 21st century, than suggested by passive GIS-based "bathtub" inundation models. Lastly, observations and the modeling results suggest that classic atolls with islands on a shallow atoll rim are more susceptible to the combined effects of sea-level rise and wave-driven inundation than atolls characterized by a deep atoll rim.

Downscaling with a nested regional climate model in near-surface fields over the contiguous United States: WRF dynamical downscaling

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wang, Jiali; Kotamarthi, Veerabhadra R.

The Weather Research and Forecasting (WRF) model is used for dynamic downscaling of 2.5 degree National Centers for Environmental Prediction-U.S. Department of Energy Reanalysis II (NCEP-R2) data for 1980-2010 at 12 km resolution over most of North America. The model's performance for surface air temperature and precipitation is evaluated by comparison with high-resolution observational data sets. The model's ability to add value is investigated by comparison with NCEP-R2 data and a 50 km regional climate simulation. The causes for major model bias are studied through additional sensitivity experiments with various model setup/integration approaches and physics representations. The WRF captures themore » main features of the spatial patterns and annual cycles of air temperature and precipitation over most of the contiguous United States. However, simulated air temperatures over the south central region and precipitation over the Great Plains and the Southwest have significant biases. Allowing longer spin-up time, reducing the nudging strength, or replacing the WRF Single-Moment 6-class microphysics with Morrison microphysics reduces the bias over some subregions. However, replacing the Grell-Devenyi cumulus parameterization with Kain-Fritsch shows no improvement. The 12 km simulation does add value above the NCEP-R2 data and the 50 km simulation over mountainous and coastal zones.« less

Higher-order ice-sheet modelling accelerated by multigrid on graphics cards

NASA Astrophysics Data System (ADS)

Brædstrup, Christian; Egholm, David

2013-04-01

Higher-order ice flow modelling is a very computer intensive process owing primarily to the nonlinear influence of the horizontal stress coupling. When applied for simulating long-term glacial landscape evolution, the ice-sheet models must consider very long time series, while both high temporal and spatial resolution is needed to resolve small effects. The use of higher-order and full stokes models have therefore seen very limited usage in this field. However, recent advances in graphics card (GPU) technology for high performance computing have proven extremely efficient in accelerating many large-scale scientific computations. The general purpose GPU (GPGPU) technology is cheap, has a low power consumption and fits into a normal desktop computer. It could therefore provide a powerful tool for many glaciologists working on ice flow models. Our current research focuses on utilising the GPU as a tool in ice-sheet and glacier modelling. To this extent we have implemented the Integrated Second-Order Shallow Ice Approximation (iSOSIA) equations on the device using the finite difference method. To accelerate the computations, the GPU solver uses a non-linear Red-Black Gauss-Seidel iterator coupled with a Full Approximation Scheme (FAS) multigrid setup to further aid convergence. The GPU finite difference implementation provides the inherent parallelization that scales from hundreds to several thousands of cores on newer cards. We demonstrate the efficiency of the GPU multigrid solver using benchmark experiments.

Generation of dark hollow femtosecond pulsed beam by phase-only liquid crystal spatial light modulator

NASA Astrophysics Data System (ADS)

Nie, Yongming; Ma, Haotong; Li, Xiujian; Hu, Wenhua; Yang, Jiankun

2011-07-01

Based on the refractive laser beam shaping system, the dark hollow femtosecond pulse beam shaping technique with a phase-only liquid crystal spatial light modulator (LC-SLM) is demonstrated. The phase distribution of the LC-SLM is derived by the energy conservation and constant optical path principle. The effects of the shaping system on the temporal properties, including spectral phase distribution and bandwidth of the femtosecond pulse, are analyzed in detail. Experimental results show that the hollow intensity distribution of the output pulsed beam can be maintained much at more than 1200mm. The spectral phase of the pulse is changed, and the pulse width is expanded from 199 to 230fs, which is caused by the spatial--temporal coupling effect. The coupling effect mainly depends on the phase-only LC-SLM itself, not on its loaded phase distribution. The experimental results indicate that the proposed shaping setup can generate a dark hollow femtosecond pulsed beam effectively, because the temporal Gaussian waveform is unchanged.

Subcellular glucose exposure biases the spatial distribution of insulin granules in single pancreatic beta cells.

PubMed

Terao, Kyohei; Gel, Murat; Okonogi, Atsuhito; Fuke, Ariko; Okitsu, Teru; Tada, Takashi; Suzuki, Takaaki; Nagamatsu, Shinya; Washizu, Masao; Kotera, Hidetoshi

2014-02-18

In living tissues, a cell is exposed to chemical substances delivered partially to its surface. Such a heterogeneous chemical environment potentially induces cell polarity. To evaluate this effect, we developed a microfluidic device that realizes spatially confined delivery of chemical substances at subcellular resolution. Our microfluidic device allows simple setup and stable operation for over 4 h to deliver chemicals partially to a single cell. Using the device, we showed that subcellular glucose exposure triggers an intracellular [Ca(2+)] change in the β-cells. In addition, the imaging of a cell expressing GFP-tagged insulin showed that continuous subcellular exposure to glucose biased the spatial distribution of insulin granules toward the site where the glucose was delivered. Our approach illustrates an experimental technique that will be applicable to many biological experiments for imaging the response to subcellular chemical exposure and will also provide new insights about the development of polarity of β-cells.

Subcellular glucose exposure biases the spatial distribution of insulin granules in single pancreatic beta cells

PubMed Central

Terao, Kyohei; Gel, Murat; Okonogi, Atsuhito; Fuke, Ariko; Okitsu, Teru; Tada, Takashi; Suzuki, Takaaki; Nagamatsu, Shinya; Washizu, Masao; Kotera, Hidetoshi

2014-01-01

In living tissues, a cell is exposed to chemical substances delivered partially to its surface. Such a heterogeneous chemical environment potentially induces cell polarity. To evaluate this effect, we developed a microfluidic device that realizes spatially confined delivery of chemical substances at subcellular resolution. Our microfluidic device allows simple setup and stable operation for over 4 h to deliver chemicals partially to a single cell. Using the device, we showed that subcellular glucose exposure triggers an intracellular [Ca2+] change in the β-cells. In addition, the imaging of a cell expressing GFP-tagged insulin showed that continuous subcellular exposure to glucose biased the spatial distribution of insulin granules toward the site where the glucose was delivered. Our approach illustrates an experimental technique that will be applicable to many biological experiments for imaging the response to subcellular chemical exposure and will also provide new insights about the development of polarity of β-cells. PMID:24535122

Proposal for generating synthetic magnetic fields in hexagonal optical lattices

NASA Astrophysics Data System (ADS)

Tian, Binbin; Endres, Manuel; Pekker, David

2015-05-01

We propose a new approach to generating synthetic magnetic fields in ultra cold atom systems that does not rely on either Raman transitions nor periodic drive. Instead, we consider a hexagonal optical lattice produced by the intersection of three laser beams at 120 degree angles, where the intensity of one or more of the beams is spatially non-uniform. The resulting optical lattice remains hexagonal, but has spatially varying hopping matrix elements. For atoms near the Dirac points, these spatial variations appear as a gauge field, similar to the fictitious gauge field that is induced for for electrons in strained graphene. We suggest that a robust way to generate a gauge field that corresponds to a uniform flux is to aligning three gaussian beams to intersect in an equilateral triangle. Using realistic experimental parameters, we show how the proposed setup can be used to observe cyclotron motion of an atom cloud - the conventional Hall effect and distinct Landau levels - the integer quantum Hall effect.

Effects of polymers on the spatial structure of turbulent flows

NASA Astrophysics Data System (ADS)

Sinhuber, Michael; Ballouz, Joseph G.; Ouellette, Nicholas T.

2017-11-01

It is well known that the addition of minor amounts of polymers to a turbulent water flow can significantly change its properties. One of the most prominent effects is the observed drastic reduction of drag in wall-bounded flows that is utilized in many engineering applications. Much of the research on polymers in turbulence has focused on their influence on the turbulent energy cascade and their interaction with the energy transfer processes. Much less investigated are their effects on the spatial structure of turbulent flows. In a classical von-Kárman swirling flow setup, we used Lagrangian particle tracking to obtain three-dimensional particle trajectories, velocities, and accelerations and find that polymers have a significant effect on Lagrangian measures of the turbulence structure such as radial distribution functions and the curvature of particle trajectories. We find that not only do the statistical distributions change, but also that polymers appear to affect the spatial statistics well beyond the size of the polymers themselves.

Attenuation and bit error rate for four co-propagating spatially multiplexed optical communication channels of exactly same wavelength in step index multimode fibers

NASA Astrophysics Data System (ADS)

Murshid, Syed H.; Chakravarty, Abhijit

2011-06-01

Spatial domain multiplexing (SDM) utilizes co-propagation of exactly the same wavelength in optical fibers to increase the bandwidth by integer multiples. Input signals from multiple independent single mode pigtail laser sources are launched at different input angles into a single multimode carrier fiber. The SDM channels follow helical paths and traverse through the carrier fiber without interfering with each other. The optical energy from the different sources is spatially distributed and takes the form of concentric circular donut shaped rings, where each ring corresponds to an independent laser source. At the output end of the fiber these donut shaped independent channels can be separated either with the help of bulk optics or integrated concentric optical detectors. This presents the experimental setup and results for a four channel SDM system. The attenuation and bit error rate for individual channels of such a system is also presented.

Phase-based, high spatial resolution and distributed, static and dynamic strain sensing using Brillouin dynamic gratings in optical fibers.

PubMed

Bergman, Arik; Langer, Tomi; Tur, Moshe

2017-03-06

A novel technique combining Brillouin phase-shift measurements with Brillouin dynamic gratings (BDGs) reflectometry in polarization-maintaining fibers is presented here for the first time. While a direct measurement of the optical phase in standard BDG setups is impractical due to non-local phase contributions, their detrimental effect is reduced by ~4 orders of magnitude through the coherent addition of Stokes and anti-Stokes reflections from two counter-propagating BDGs in the fiber. The technique advantageously combines the high-spatial-resolution of BDGs reflectometry with the increased tolerance to optical power fluctuations of phasorial measurements, to enhance the performance of fiber-optic strain sensors. We demonstrate a distributed measurement (20cm spatial-resolution) of both static and dynamic (5kHz of vibrations at a sampling rate of 1MHz) strain fields acting on the fiber, in good agreement with theory and (for the static case) with the results of commercial reflectometers.

Spatial acoustic radiation of respiratory sounds for sleep evaluation.

PubMed

Shabtai, Noam R; Zigel, Yaniv

2017-09-01

Body posture has an effect on sleeping quality and breathing disorders and therefore it is important to be recognized for the completion of the sleep evaluation process. Since humans have a directional acoustic radiation pattern, it is hypothesized that microphone arrays can be used to recognize different body postures, which is highly practical for sleep evaluation applications that already measure respiratory sounds using distant microphones. Furthermore, body posture may have an effect on distant microphone measurement; hence, the measurement can be compensated if the body posture is correctly recognized. A spherical harmonics decomposition approach to the spatial acoustic radiation is presented, assuming an array of eight microphones in a medium-sized audiology booth. The spatial sampling and reconstruction of the radiation pattern is discussed, and a final setup for the microphone array is recommended. A case study is shown using recorded segments of snoring and breathing sounds of three human subjects in three body postures in a silent but not anechoic audiology booth.

[Individual indirect bonding technique (IIBT) using set-up model].

PubMed

Kyung, H M

1989-01-01

There has been much progress in Edgewise Appliance since E.H. Angle. One of the most important procedures in edgewise appliance is correct bracket position. Not only conventional edgewise appliance but also straight wire appliance & lingual appliance cannot be used more effectively unless the bracket position is accurate. Improper bracket positioning may reveal much problems during treatment, especially in finishing state. It may require either rebonding after the removal of the malpositioned bracket or the greater number of arch wire and the more complex wire bending, causing much difficulty in performing effective treatments. This made me invent Individual Indirect Bonding Technique with the use of multi-purpose set-up model in order to determine a correct and objective bracket position according to individual patients. This technique is more accurate than former indirect bonding techniques in bracket positioning, because it decides the bracket position on a set-up model which has produced to have the occlusal relationship the clinician desired. This technique is especially effective in straight wire appliance and lingual appliance in which the correct bracket positioning is indispensible.

A periodic review integrated inventory model with controllable setup cost, imperfect items, and inspection errors under service level constraint

NASA Astrophysics Data System (ADS)

Saga, R. S.; Jauhari, W. A.; Laksono, P. W.

2017-11-01

This paper presents an integrated inventory model which consists of single vendor and buyer. The buyer managed its inventory periodically and orders products from the vendor to satisfy the end customer’s demand, where the annual demand and the ordering cost were in the fuzzy environment. The buyer used a service level constraint instead of the stock-out cost term, so that the stock-out level per cycle was bounded. Then, the vendor produced and delivered products to the buyer. The vendor had a choice to commit an investment to reduce the setup cost. However, the vendor’s production process was imperfect, thus the lot delivered contained some defective products. Moreover, the buyer’s inspection process was not error-free since the inspector could be mistaken in categorizing the product’s quality. The objective was to find the optimum value for the review period, the setup cost, and the number of deliveries in one production cycle which might minimize the joint total cost. Furthermore, the algorithm and numerical example were provided to illustrate the application of the model.

Optical implementation of (3, 3, 2) regular rectangular CC-Banyan optical network

NASA Astrophysics Data System (ADS)

Yang, Junbo; Su, Xianyu

2007-07-01

CC-Banyan network plays an important role in the optical interconnection network. Based on previous reports of (2, 2, 3) the CC-Banyan network, another rectangular-Banyan network, i.e. (3, 3, 2) rectangular CC-Banyan network, has been discussed. First, according to its construction principle, the topological graph and the routing rule of (3, 3, 2) rectangular CC-Banyan network have been proposed. Then, the optically experimental setup of (3, 3, 2) rectangular CC-Banyan network has been designed and achieved. Each stage of node switch consists of phase spatial light modulator (PSLM) and polarizing beam-splitter (PBS), and fiber has been used to perform connection between adjacent stages. PBS features that s-component (perpendicular to the incident plane) of the incident light beam is reflected, and p-component (parallel to the incident plane) passes through it. According to switching logic, under the control of external electrical signals, PSLM functions to control routing paths of the signal beams, i.e. the polarization of each optical signal is rotated or not rotated 90° by a programmable PSLM. Finally, the discussion and analysis show that the experimental setup designed here can realize many functions such as optical signal switch and permutation. It has advantages of large number of input/output-ports, compact in structure, and low energy loss. Hence, the experimental setup can be used in optical communication and optical information processing.

Biphasic Scaffolds from Marine Collagens for Regeneration of Osteochondral Defects.

PubMed

Bernhardt, Anne; Paul, Birgit; Gelinsky, Michael

2018-03-13

Collagens of marine origin are applied increasingly as alternatives to mammalian collagens in tissue engineering. The aim of the present study was to develop a biphasic scaffold from exclusively marine collagens supporting both osteogenic and chondrogenic differentiation and to find a suitable setup for in vitro chondrogenic and osteogenic differentiation of human mesenchymal stroma cells (hMSC). Biphasic scaffolds from biomimetically mineralized salmon collagen and fibrillized jellyfish collagen were fabricated by joint freeze-drying and crosslinking. Different experiments were performed to analyze the influence of cell density and TGF-β on osteogenic differentiation of the cells in the scaffolds. Gene expression analysis and analysis of cartilage extracellular matrix components were performed and activity of alkaline phosphatase was determined. Furthermore, histological sections of differentiated cells in the biphasic scaffolds were analyzed. Stable biphasic scaffolds from two different marine collagens were prepared. An in vitro setup for osteochondral differentiation was developed involving (1) different seeding densities in the phases; (2) additional application of alginate hydrogel in the chondral part; (3) pre-differentiation and sequential seeding of the scaffolds and (4) osteochondral medium. Spatially separated osteogenic and chondrogenic differentiation of hMSC was achieved in this setup, while osteochondral medium in combination with the biphasic scaffolds alone was not sufficient to reach this ambition. Biphasic, but monolithic scaffolds from exclusively marine collagens are suitable for the development of osteochondral constructs.

Direct collapse to supermassive black hole seeds: comparing the AMR and SPH approaches.

PubMed

Luo, Yang; Nagamine, Kentaro; Shlosman, Isaac

2016-07-01

We provide detailed comparison between the adaptive mesh refinement (AMR) code enzo-2.4 and the smoothed particle hydrodynamics (SPH)/ N -body code gadget-3 in the context of isolated or cosmological direct baryonic collapse within dark matter (DM) haloes to form supermassive black holes. Gas flow is examined by following evolution of basic parameters of accretion flows. Both codes show an overall agreement in the general features of the collapse; however, many subtle differences exist. For isolated models, the codes increase their spatial and mass resolutions at different pace, which leads to substantially earlier collapse in SPH than in AMR cases due to higher gravitational resolution in gadget-3. In cosmological runs, the AMR develops a slightly higher baryonic resolution than SPH during halo growth via cold accretion permeated by mergers. Still, both codes agree in the build-up of DM and baryonic structures. However, with the onset of collapse, this difference in mass and spatial resolution is amplified, so evolution of SPH models begins to lag behind. Such a delay can have effect on formation/destruction rate of H 2 due to UV background, and on basic properties of host haloes. Finally, isolated non-cosmological models in spinning haloes, with spin parameter λ ∼ 0.01-0.07, show delayed collapse for greater λ, but pace of this increase is faster for AMR. Within our simulation set-up, gadget-3 requires significantly larger computational resources than enzo-2.4 during collapse, and needs similar resources, during the pre-collapse, cosmological structure formation phase. Yet it benefits from substantially higher gravitational force and hydrodynamic resolutions, except at the end of collapse.

Direct collapse to supermassive black hole seeds: comparing the AMR and SPH approaches

NASA Astrophysics Data System (ADS)

Luo, Yang; Nagamine, Kentaro; Shlosman, Isaac

2016-07-01

We provide detailed comparison between the adaptive mesh refinement (AMR) code ENZO-2.4 and the smoothed particle hydrodynamics (SPH)/N-body code GADGET-3 in the context of isolated or cosmological direct baryonic collapse within dark matter (DM) haloes to form supermassive black holes. Gas flow is examined by following evolution of basic parameters of accretion flows. Both codes show an overall agreement in the general features of the collapse; however, many subtle differences exist. For isolated models, the codes increase their spatial and mass resolutions at different pace, which leads to substantially earlier collapse in SPH than in AMR cases due to higher gravitational resolution in GADGET-3. In cosmological runs, the AMR develops a slightly higher baryonic resolution than SPH during halo growth via cold accretion permeated by mergers. Still, both codes agree in the build-up of DM and baryonic structures. However, with the onset of collapse, this difference in mass and spatial resolution is amplified, so evolution of SPH models begins to lag behind. Such a delay can have effect on formation/destruction rate of H2 due to UV background, and on basic properties of host haloes. Finally, isolated non-cosmological models in spinning haloes, with spin parameter λ ˜ 0.01-0.07, show delayed collapse for greater λ, but pace of this increase is faster for AMR. Within our simulation set-up, GADGET-3 requires significantly larger computational resources than ENZO-2.4 during collapse, and needs similar resources, during the pre-collapse, cosmological structure formation phase. Yet it benefits from substantially higher gravitational force and hydrodynamic resolutions, except at the end of collapse.

Development and implementation of an 84-channel matrix gradient coil.

PubMed

Littin, Sebastian; Jia, Feng; Layton, Kelvin J; Kroboth, Stefan; Yu, Huijun; Hennig, Jürgen; Zaitsev, Maxim

2018-02-01

Design, implement, integrate, and characterize a customized coil system that allows for generating spatial encoding magnetic fields (SEMs) in a highly-flexible fashion. A gradient coil with a high number of individual elements was designed. Dimensions of the coil were chosen to mimic a whole-body gradient system, scaled down to a head insert. Mechanical shape and wire layout of each element were optimized to increase the local gradient strength while minimizing eddy current effects and simultaneously considering manufacturing constraints. Resulting wire layout and mechanical design is presented. A prototype matrix gradient coil with 12 × 7 = 84 elements consisting of two element types was realized and characterized. Measured eddy currents are <1% of the original field. The coil is shown to be capable of creating nonlinear, and linear SEMs. In a DSV of 0.22 m gradient strengths between 24 mT∕m and 78 mT∕m could be realized locally with maximum currents of 150 A. Initial proof-of-concept imaging experiments using linear and nonlinear encoding fields are demonstrated. A shielded matrix gradient coil setup capable of generating encoding fields in a highly-flexible manner was designed and implemented. The presented setup is expected to serve as a basis for validating novel imaging techniques that rely on nonlinear spatial encoding fields. Magn Reson Med 79:1181-1191, 2018. © 2017 International Society for Magnetic Resonance in Medicine. © 2017 International Society for Magnetic Resonance in Medicine.

Experimental setup for the laboratory investigation of micrometeoroid ablation using a dust accelerator.

PubMed

Thomas, Evan; Simolka, Jonas; DeLuca, Michael; Horányi, Mihály; Janches, Diego; Marshall, Robert A; Munsat, Tobin; Plane, John M C; Sternovsky, Zoltan

2017-03-01

A facility has been developed to simulate the ablation of micrometeoroids in laboratory conditions. An electrostatic dust accelerator is used to generate iron particles with velocities of 10-70 km/s. The particles are then introduced into a chamber pressurized with a target gas, where the pressure is adjustable between 0.01 and 0.5 Torr, and the particle partially or completely ablates over a short distance. An array of biased electrodes above and below the ablation path is used to collect the generated ions/electrons with a spatial resolution of 2.6 cm along the ablating particles' path, thus allowing the study of the spatiotemporal evolution of the process. For completely ablated particles, the total collected charge directly yields the ionization coefficient of a given dust material-target gas combination. The first results of this facility measured the ionization coefficient of iron atoms with N 2 , air, CO 2 , and He target gases for impact velocities >20 km/s, and are reported by Thomas et al. [Geophys. Res. Lett. 43, 3645 (2016)]. The ablation chamber is also equipped with four optical ports that allow for the detection of the light emitted by the ablating particle. A multichannel photomultiplier tube system is used to observe the ablation process with a spatial and temporal resolution of 0.64 cm and 90 ns. The preliminary results indicate that it is possible to calculate the velocity of the ablating particle from the optical observations, and in conjunction with the spatially resolved charge measurements allow for experimental validation of ablation models in future studies.

Experimental setup for the laboratory investigation of micrometeoroid ablation using a dust accelerator

NASA Astrophysics Data System (ADS)

Thomas, Evan; Simolka, Jonas; DeLuca, Michael; Horányi, Mihály; Janches, Diego; Marshall, Robert A.; Munsat, Tobin; Plane, John M. C.; Sternovsky, Zoltan

2017-03-01

A facility has been developed to simulate the ablation of micrometeoroids in laboratory conditions. An electrostatic dust accelerator is used to generate iron particles with velocities of 10-70 km/s. The particles are then introduced into a chamber pressurized with a target gas, where the pressure is adjustable between 0.01 and 0.5 Torr, and the particle partially or completely ablates over a short distance. An array of biased electrodes above and below the ablation path is used to collect the generated ions/electrons with a spatial resolution of 2.6 cm along the ablating particles' path, thus allowing the study of the spatiotemporal evolution of the process. For completely ablated particles, the total collected charge directly yields the ionization coefficient of a given dust material-target gas combination. The first results of this facility measured the ionization coefficient of iron atoms with N2, air, CO2, and He target gases for impact velocities >20 km/s, and are reported by Thomas et al. [Geophys. Res. Lett. 43, 3645 (2016)]. The ablation chamber is also equipped with four optical ports that allow for the detection of the light emitted by the ablating particle. A multichannel photomultiplier tube system is used to observe the ablation process with a spatial and temporal resolution of 0.64 cm and 90 ns. The preliminary results indicate that it is possible to calculate the velocity of the ablating particle from the optical observations, and in conjunction with the spatially resolved charge measurements allow for experimental validation of ablation models in future studies.

Experimental Setup for the Laboratory Investigation of Micrometeoroid Ablation Using a Dust Accelerator

NASA Technical Reports Server (NTRS)

Thomas, Evan; Simolka, Jonas; DeLuca, Michael; Horanyi, Mihaly; Janches, Diego; Marshall, Robert A.; Munsat, Tobin; Plane, John M. C.; Sternovsky, Zoltan

2017-01-01

A facility has been developed to simulate the ablation of micrometeoroids in laboratory conditions. An electrostatic dust accelerator is used to generate iron particles with velocities of 10-70 kilometers. The particles are then introduced into a chamber pressurized with a target gas, where the pressure is adjustable between 0.01 and 0.5 Torr, and the particle partially or completely ablates over a short distance. An array of biased electrodes above and below the ablation path is used to collect the generated ions/electrons with a spatial resolution of 2.6 centimeters along the ablating particles path, thus allowing the study of the spatiotemporal evolution of the process. For completely ablated particles, the total collected charge directly yields the ionization coefficient of a given dust material-target gas combination. The first results of this facility measured the ionization coefficient of iron atoms with N2, air, CO2, and He target gases for impact velocities greater than 20 kilometers per second, and are reported by Thomas et al. The ablation chamber is also equipped with four optical ports that allow for the detection of the light emitted by the ablating particle. A multichannel photomultiplier tube system is used to observe the ablation process with a spatial and temporal resolution of 0.64 centimeters and 90 nanoseconds. The preliminary results indicate that it is possible to calculate the velocity of the ablating particle from the optical observations, and in conjunction with the spatially resolved charge measurements allow for experimental validation of ablation models in future studies.

Thermal Testing and Model Correlation for Advanced Topographic Laser Altimeter Instrument (ATLAS)

NASA Technical Reports Server (NTRS)

Patel, Deepak

2016-01-01

The Advanced Topographic Laser Altimeter System (ATLAS) part of the Ice Cloud and Land Elevation Satellite 2 (ICESat-2) is an upcoming Earth Science mission focusing on the effects of climate change. The flight instrument passed all environmental testing at GSFC (Goddard Space Flight Center) and is now ready to be shipped to the spacecraft vendor for integration and testing. This topic covers the analysis leading up to the test setup for ATLAS thermal testing as well as model correlation to flight predictions. Test setup analysis section will include areas where ATLAS could not meet flight like conditions and what were the limitations. Model correlation section will walk through changes that had to be made to the thermal model in order to match test results. The correlated model will then be integrated with spacecraft model for on-orbit predictions.

Mapping the ghost free bigravity into braneworld setup

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yamashita, Yasuho; Tanaka, Takahiro, E-mail: yasuho@yukawa.kyoto-u.ac.jp, E-mail: tanaka@yukawa.kyoto-u.ac.jp

2014-06-01

We discuss whether or not bigravity theory can be embedded into the braneworld setup. As a candidate, we consider Dvali-Gabadadze-Porrati two-brane model with the Goldberger-Wise radion stabilization. We will show that we can construct a ghost free model whose low energy spectrum is composed of a massless graviton and a massive graviton with a small mass. As is expected, the behavior of this effective theory is shown to be identical to the ghost free bigravity. Unfortunately, this correspondence breaks down at a relatively low energy due to the limitation of the adopted stabilization mechanism.

COMPARISON OF LAPAROSCOPIC SKILLS PERFORMANCE USING SINGLE-SITE ACCESS (SSA) DEVICES VS. AN INDEPENDENT-PORT SSA APPROACH

PubMed Central

Schill, Matthew R.; Varela, J. Esteban; Frisella, Margaret M.; Brunt, L. Michael

2015-01-01

Background We compared performance of validated laparoscopic tasks on four commercially available single site access (SSA) access devices (AD) versus an independent port (IP) SSA set-up. Methods A prospective, randomized comparison of laparoscopic skills performance on four AD (GelPOINT™, SILS™ Port, SSL Access System™, TriPort™) and one IP SSA set-up was conducted. Eighteen medical students (2nd–4th year), four surgical residents, and five attending surgeons were trained to proficiency in multi-port laparoscopy using four laparoscopic drills (peg transfer, bean drop, pattern cutting, extracorporeal suturing) in a laparoscopic trainer box. Drills were then performed in random order on each IP-SSA and AD-SSA set-up using straight laparoscopic instruments. Repetitions were timed and errors recorded. Data are mean ± SD, and statistical analysis was by two-way ANOVA with Tukey HSD post-hoc tests. Results Attending surgeons had significantly faster total task times than residents or students (p< 0.001), but the difference between residents and students was NS. Pair-wise comparisons revealed significantly faster total task times for the IP-SSA set-up compared to all four AD-SSA’s within the student group only (p<0.05). Total task times for residents and attending surgeons showed a similar profile, but the differences were NS. When data for the three groups was combined, the total task time was less for the IP-SSA set-up than for each of the four AD-SSA set-ups (p < 0.001). Similarly,, the IP-SSA set-up was significantly faster than 3 of 4 AD-SSA set-ups for peg transfer, 3 of 4 for pattern cutting, and 2 of 4 for suturing. No significant differences in error rates between IP-SSA and AD-SSA set-ups were detected. Conclusions When compared to an IP-SSA laparoscopic set-up, single site access devices are associated with longer task performance times in a trainer box model, independent of level of training. Task performance was similar across different SSA devices. PMID:21993938

A new setup for experimental investigations of solar wind sputtering

NASA Astrophysics Data System (ADS)

Szabo, Paul S.; Berger, Bernhard M.; Chiba, Rimpei; Stadlmayr, Reinhard; Aumayr, Friedrich

2017-04-01

The surfaces of Mercury and Moon are not shielded by a thick atmosphere and therefore they are exposed to bombardment by charged particles, ultraviolet photons and micrometeorites. These influences lead to an alteration and erosion of the surface, and the emitted atoms and molecules form a thin atmosphere, an exosphere, around these celestial bodies [1]. The composition of these exospheres is connected to the surface composition and has been subject to flyby measurements by satellites. Model calculations which include the erosion mechanisms can be used as a method of comparison for such exosphere measurements and allow conclusions about the surface composition. Surface sputtering induced by solar wind ions hereby represents a major contribution to the erosion of the surfaces of Mercury and Moon [1]. However, the experimental database for sputtering of respective analogue materials by solar wind ions, which would be necessary for exact modelling of the space weathering process, is still in its early stages. Sputtering experiments have been performed at TU Wien during the past years using a quartz crystal microbalance (QCM) technique [2]. Target material is deposited on the quartz surface as a thin layer and the quartz's resonance frequency is measured under ion bombardment. The sputter yield can then be calculated from the frequency change and the ion current [2]. In order to remove the restrictions of a thin layer QCM target and simplify experiments with composite targets, a new QCM catcher setup was developed. In the new design, the QCM is placed beside the target holder and acts as a catcher for material that is sputtered from the target surface. By comparing the catcher signal to reference measurements and SDTrimSP simulations [3], the target sputter yield can be determined. In order to test the setup, we have performed experiments with a Au-coated QCM target under 2 keV Ar+ bombardment so that both the mass changes at the target and at the catcher could be obtained simultaneously. The results coincide very well with SDTrimSP predictions showing the feasibility of the new design [4]. Furthermore, Fe-coated QCM targets with different surface roughness were investigated in the new setup. The surface roughness represents a key factor for the solar wind induced erosion of planetary or lunar rocks. It has a strong influence on the absolute sputtering yield as well as on the spatial distribution of sputtered particles and was therefore investigated. As a next step, sputtering experiments with Mercury or Moon analogues will be conducted. Knowledge gained in the course of this research will enhance the understanding of surface sputtering by solar wind ions and used to improve theoretical models of the Mercury's and Moon's exosphere formation. References: [1] E. Kallio, et al., Planetary and Space Science, 56, 1506 (2008). [2] G. Hayderer, et al., Review of Scientific Instruments, 70, 3696 (1999). [3] A. Mutzke, R. Schneider, W. Eckstein, R. Dohmen, SDTrimSP: Version 5.00, IPP Report, 12/8, (2011). [4] B. M. Berger, P. S. Szabo, R. Stadlmayr, F. Aumayr, Nucl. Instrum. Meth. Phys. Res. B, doi: 10.1016/j.nimb.2016.11.039

Capturing flood-to-drought transitions in regional climate model simulations

NASA Astrophysics Data System (ADS)

Anders, Ivonne; Haslinger, Klaus; Hofstätter, Michael; Salzmann, Manuela; Resch, Gernot

2017-04-01

In previous studies atmospheric cyclones have been investigated in terms of related precipitation extremes in Central Europe. Mediterranean (Vb-like) cyclones are of special relevance as they are frequently related to high atmospheric moisture fluxes leading to floods and landslides in the Alpine region. Another focus in this area is on droughts, affecting soil moisture and surface and sub-surface runoff as well. Such events develop differently depending on available pre-saturation of water in the soil. In a first step we investigated two time periods which encompass a flood event and a subsequent drought on very different time scales, one long lasting transition (2002/2003) and a rather short one between May and August 2013. In a second step we extended the investigation to the long time period 1950-2016. We focused on high spatial and temporal scales and assessed the currently achievable accuracy in the simulation of the Vb-events on one hand and following drought events on the other hand. The state-of-the-art regional climate model CCLM is applied in hindcast-mode simulating the single events described above, but also the time from 1948 to 2016 to evaluate the results from the short runs to be valid for the long time period. Besides the conventional forcing of the regional climate model at its lateral boundaries, a spectral nudging technique is applied. The simulations covering the European domain have been varied systematically different model parameters. The resulting precipitation amounts have been compared to E-OBS gridded European precipitation data set and a recent high spatially resolved precipitation data set for Austria (GPARD-6). For the drought events the Standardized Precipitation Evapotranspiration Index (SPEI), soil moisture and runoff has been investigated. Varying the spectral nudging setup helps us to understand the 3D-processes during these events, but also to identify model deficiencies. To improve the simulation of such events in the past, improves also the ability to assess a climate change signal in the recent and far future.

In vitro quantification of the performance of model-based mono-planar and bi-planar fluoroscopy for 3D joint kinematics estimation.

PubMed

Tersi, Luca; Barré, Arnaud; Fantozzi, Silvia; Stagni, Rita

2013-03-01

Model-based mono-planar and bi-planar 3D fluoroscopy methods can quantify intact joints kinematics with performance/cost trade-off. The aim of this study was to compare the performances of mono- and bi-planar setups to a marker-based gold-standard, during dynamic phantom knee acquisitions. Absolute pose errors for in-plane parameters were lower than 0.6 mm or 0.6° for both mono- and bi-planar setups. Mono-planar setups resulted critical in quantifying the out-of-plane translation (error < 6.5 mm), and bi-planar in quantifying the rotation along bone longitudinal axis (error < 1.3°). These errors propagated to joint angles and translations differently depending on the alignment of the anatomical axes and the fluoroscopic reference frames. Internal-external rotation was the least accurate angle both with mono- (error < 4.4°) and bi-planar (error < 1.7°) setups, due to bone longitudinal symmetries. Results highlighted that accuracy for mono-planar in-plane pose parameters is comparable to bi-planar, but with halved computational costs, halved segmentation time and halved ionizing radiation dose. Bi-planar analysis better compensated for the out-of-plane uncertainty that is differently propagated to relative kinematics depending on the setup. To take its full benefits, the motion task to be investigated should be designed to maintain the joint inside the visible volume introducing constraints with respect to mono-planar analysis.

A spatially distributed and physically based tool to modelling rainfall-triggered landslides

NASA Astrophysics Data System (ADS)

Arnone, E.; Noto, L. V.; Lepore, C.; Bras, R. L.

2009-09-01

Landslides are a serious threat to lives and property throughout the world. Over the last few years the need to provide consistent tools and support to decision-makers and land managers have led to significant progress in the analysis and understanding of the occurrence of landslides. The causes of landslides are varied. Multiple dynamic processes are involved in driving slope failures. One of these causes is prolonged rainfall, which affect slope stability in different ways. Water entering the ground beneath a slope always causes a rise of the piezometric surface, which in turn involves an increase of the pore-water pressure and a decrease of the soil shear resistance. For this reason, knowledge of spatio-temporal dynamics of soil water content, groundwater and infiltration processes is of considerable importance in the understanding and prediction of landslides dynamics. Many methods and techniques have been proposed to estimate when and where rainfall could trigger slope failure. In this paper a spatially distributed and physically based approach is presented, which integrates of a failure model with an hydrological one. The hydrological model used in the study is the tRIBS model (Triangulated Irregular Network (TIN-based) Real-Time Integrated Basin Simulator) that allows simulation of spatial and temporal hydrological dynamics influencing the landsliding, in particular infiltration, evapotranspiration, groundwater dynamics and soil moisture conditions. In order to evaluate the slope stability, the infinite slope model has been implemented in tRIBS, making up a new component of the model. For each computational element, the model is able to verify the stability condition as a function of the safety factor, splitting between the unconditionally stable and the conditionally stable computational cells. The amount of detached soil and its possible path are also estimated. The variations in elevation due to the landslides modify the basin morphology. The computational TIN is updated when a threshold related to the changes in elevation is exceeded. Model performance has been evaluated carrying out a setup case in a small catchment with very steep slopes, located in the northern part of Sicily (Italy). The test has been useful to highlight weaknesses and strengths of the model as well as to enhance the formulation. Another validation test is being carried out using landslides data recorded in the island of Puerto Rico, a US territory, where landslide triggered by rainfall are the most common type with one or two events per year.

Range-Specific High-resolution Mesoscale Model Setup

NASA Technical Reports Server (NTRS)

Watson, Leela R.

2013-01-01

This report summarizes the findings from an AMU task to determine the best model configuration for operational use at the ER and WFF to best predict winds, precipitation, and temperature. The AMU ran test cases in the warm and cool seasons at the ER and for the spring and fall seasons at WFF. For both the ER and WFF, the ARW core outperformed the NMM core. Results for the ER indicate that the Lin microphysical scheme and the YSU PBL scheme is the optimal model configuration for the ER. It consistently produced the best surface and upper air forecasts, while performing fairly well for the precipitation forecasts. Both the Ferrier and Lin microphysical schemes in combination with the YSU PBL scheme performed well for WFF in the spring and fall seasons. The AMU has been tasked with a follow-on modeling effort to recommended local DA and numerical forecast model design optimized for both the ER and WFF to support space launch activities. The AMU will determine the best software and type of assimilation to use, as well as determine the best grid resolution for the initialization based on spatial and temporal availability of data and the wall clock run-time of the initialization. The AMU will transition from the WRF EMS to NU-WRF, a NASA-specific version of the WRF that takes advantage of unique NASA software and datasets. 37

Electrical resistivity tomography to quantify in situ liquid content in a full-scale dry anaerobic digestion reactor.

PubMed

André, L; Lamy, E; Lutz, P; Pernier, M; Lespinard, O; Pauss, A; Ribeiro, T

2016-02-01

The electrical resistivity tomography (ERT) method is a non-intrusive method widely used in landfills to detect and locate liquid content. An experimental set-up was performed on a dry batch anaerobic digestion reactor to investigate liquid repartition in process and to map spatial distribution of inoculum. Two array electrodes were used: pole-dipole and gradient arrays. A technical adaptation of ERT method was necessary. Measured resistivity data were inverted and modeled by RES2DINV software to get resistivity sections. Continuous calibration along resistivity section was necessary to understand data involving sampling and physicochemical analysis. Samples were analyzed performing both biochemical methane potential and fiber quantification. Correlations were established between the protocol of reactor preparation, resistivity values, liquid content, methane potential and fiber content representing liquid repartition, high methane potential zones and degradations zones. ERT method showed a strong relevance to monitor and to optimize the dry batch anaerobic digestion process. Copyright © 2015 Elsevier Ltd. All rights reserved.

Laboratory implementation of edge illumination X-ray phase-contrast imaging with energy-resolved detectors

NASA Astrophysics Data System (ADS)

Diemoz, P. C.; Endrizzi, M.; Vittoria, F. A.; Hagen, C. K.; Kallon, G.; Basta, D.; Marenzana, M.; Delogu, P.; Vincenzi, A.; De Ruvo, L.; Spandre, G.; Brez, A.; Bellazzini, R.; Olivo, A.

2015-03-01

Edge illumination (EI) X-ray phase-contrast imaging (XPCI) has potential for applications in different fields of research, including materials science, non-destructive industrial testing, small-animal imaging, and medical imaging. One of its main advantages is the compatibility with laboratory equipment, in particular with conventional non-microfocal sources, which makes its exploitation in normal research laboratories possible. In this work, we demonstrate that the signal in laboratory implementations of EI can be correctly described with the use of the simplified geometrical optics. Besides enabling the derivation of simple expressions for the sensitivity and spatial resolution of a given EI setup, this model also highlights the EI's achromaticity. With the aim of improving image quality, as well as to take advantage of the fact that all energies in the spectrum contribute to the image contrast, we carried out EI acquisitions using a photon-counting energy-resolved detector. The obtained results demonstrate that this approach has great potential for future laboratory implementations of EI.

Efficient and Flexible Climate Analysis with Python in a Cloud-Based Distributed Computing Framework

NASA Astrophysics Data System (ADS)

Gannon, C.

2017-12-01

As climate models become progressively more advanced, and spatial resolution further improved through various downscaling projects, climate projections at a local level are increasingly insightful and valuable. However, the raw size of climate datasets presents numerous hurdles for analysts wishing to develop customized climate risk metrics or perform site-specific statistical analysis. Four Twenty Seven, a climate risk consultancy, has implemented a Python-based distributed framework to analyze large climate datasets in the cloud. With the freedom afforded by efficiently processing these datasets, we are able to customize and continually develop new climate risk metrics using the most up-to-date data. Here we outline our process for using Python packages such as XArray and Dask to evaluate netCDF files in a distributed framework, StarCluster to operate in a cluster-computing environment, cloud computing services to access publicly hosted datasets, and how this setup is particularly valuable for generating climate change indicators and performing localized statistical analysis.

Path-separated electron interferometry in a scanning transmission electron microscope

NASA Astrophysics Data System (ADS)

Yasin, Fehmi S.; Harvey, Tyler R.; Chess, Jordan J.; Pierce, Jordan S.; McMorran, Benjamin J.

2018-05-01

We report a path-separated electron interferometer within a scanning transmission electron microscope. In this setup, we use a nanofabricated grating as an amplitude-division beamsplitter to prepare multiple spatially separated, coherent electron probe beams. We achieve path separations of 30 nm. We pass the  +1 diffraction order probe through amorphous carbon while passing the 0th and  ‑1 orders through vacuum. The probes are then made to interfere via imaging optics, and we observe an interference pattern at the CCD detector with up to 39.7% fringe visibility. We show preliminary experimental results in which the interference pattern was recorded during a 1D scan of the diffracted probes across a test phase object. These results qualitatively agree with a modeled interference predicted by an independent measurement of the specimen thickness. This experimental design can potentially be applied to phase contrast imaging and fundamental physics experiments, such as an exploration of electron wave packet coherence length.

User's manual for three dimensional FDTD version D code for scattering from frequency-dependent dielectric and magnetic materials

NASA Technical Reports Server (NTRS)

Beggs, John H.; Luebbers, Raymond J.; Kunz, Karl S.

1992-01-01

The Penn State Finite Difference Time Domain Electromagnetic Scattering Code version D is a 3-D numerical electromagnetic scattering code based upon the finite difference time domain technique (FDTD). The manual provides a description of the code and corresponding results for several scattering problems. The manual is organized into 14 sections: introduction; description of the FDTD method; operation; resource requirements; version D code capabilities; a brief description of the default scattering geometry; a brief description of each subroutine; a description of the include file; a section briefly discussing Radar Cross Section computations; a section discussing some scattering results; a sample problem setup section; a new problem checklist; references and figure titles. The FDTD technique models transient electromagnetic scattering and interactions with objects of arbitrary shape and/or material composition. In the FDTD method, Maxwell's curl equations are discretized in time-space and all derivatives (temporal and spatial) are approximated by central differences.

Estimating porosity and solid dielectric permittivity in the Miami Limestone using high-frequency ground penetrating radar (GPR) measurements at the laboratory scale

NASA Astrophysics Data System (ADS)

Mount, Gregory J.; Comas, Xavier

2014-10-01

Subsurface water flow in South Florida is largely controlled by the heterogeneous nature of the karst limestone in the Biscayne aquifer and its upper formation, the Miami Limestone. These heterogeneities are amplified by dissolution structures that induce changes in the aquifer's material and physical properties (i.e., porosity and dielectric permittivity) and create preferential flow paths. Understanding such patterns are critical for the development of realistic groundwater flow models, particularly in the Everglades, where restoration of hydrological conditions is intended. In this work, we used noninvasive ground penetrating radar (GPR) to estimate the spatial variability in porosity and the dielectric permittivity of the solid phase of the limestone at centimeter-scale resolution to evaluate the potential for field-based GPR studies. A laboratory setup that included high-frequency GPR measurements under completely unsaturated and saturated conditions was used to estimate changes in electromagnetic wave velocity through Miami Limestone samples. The Complex Refractive Index Model was used to derive estimates of porosity and dielectric permittivity of the solid phase of the limestone. Porosity estimates of the samples ranged between 45.2 and 66.0% and showed good correspondence with estimates of porosity using analytical and digital image techniques. Solid dielectric permittivity values ranged between 7.0 and 13.0. This study shows the ability of GPR to image the spatial variability of porosity and dielectric permittivity in the Miami Limestone and shows potential for expanding these results to larger scales and other karst aquifers.

Gaussian process based independent analysis for temporal source separation in fMRI.

PubMed

Hald, Ditte Høvenhoff; Henao, Ricardo; Winther, Ole

2017-05-15

Functional Magnetic Resonance Imaging (fMRI) gives us a unique insight into the processes of the brain, and opens up for analyzing the functional activation patterns of the underlying sources. Task-inferred supervised learning with restrictive assumptions in the regression set-up, restricts the exploratory nature of the analysis. Fully unsupervised independent component analysis (ICA) algorithms, on the other hand, can struggle to detect clear classifiable components on single-subject data. We attribute this shortcoming to inadequate modeling of the fMRI source signals by failing to incorporate its temporal nature. fMRI source signals, biological stimuli and non-stimuli-related artifacts are all smooth over a time-scale compatible with the sampling time (TR). We therefore propose Gaussian process ICA (GPICA), which facilitates temporal dependency by the use of Gaussian process source priors. On two fMRI data sets with different sampling frequency, we show that the GPICA-inferred temporal components and associated spatial maps allow for a more definite interpretation than standard temporal ICA methods. The temporal structures of the sources are controlled by the covariance of the Gaussian process, specified by a kernel function with an interpretable and controllable temporal length scale parameter. We propose a hierarchical model specification, considering both instantaneous and convolutive mixing, and we infer source spatial maps, temporal patterns and temporal length scale parameters by Markov Chain Monte Carlo. A companion implementation made as a plug-in for SPM can be downloaded from https://github.com/dittehald/GPICA. Copyright © 2017 Elsevier Inc. All rights reserved.

Percentage depth dose calculation accuracy of model based algorithms in high energy photon small fields through heterogeneous media and comparison with plastic scintillator dosimetry.

PubMed

Alagar, Ananda Giri Babu; Mani, Ganesh Kadirampatti; Karunakaran, Kaviarasu

2016-01-08

Small fields smaller than 4 × 4 cm2 are used in stereotactic and conformal treatments where heterogeneity is normally present. Since dose calculation accuracy in both small fields and heterogeneity often involves more discrepancy, algorithms used by treatment planning systems (TPS) should be evaluated for achieving better treatment results. This report aims at evaluating accuracy of four model-based algorithms, X-ray Voxel Monte Carlo (XVMC) from Monaco, Superposition (SP) from CMS-Xio, AcurosXB (AXB) and analytical anisotropic algorithm (AAA) from Eclipse are tested against the measurement. Measurements are done using Exradin W1 plastic scintillator in Solid Water phantom with heterogeneities like air, lung, bone, and aluminum, irradiated with 6 and 15 MV photons of square field size ranging from 1 to 4 cm2. Each heterogeneity is introduced individually at two different depths from depth-of-dose maximum (Dmax), one setup being nearer and another farther from the Dmax. The central axis percentage depth-dose (CADD) curve for each setup is measured separately and compared with the TPS algorithm calculated for the same setup. The percentage normalized root mean squared deviation (%NRMSD) is calculated, which represents the whole CADD curve's deviation against the measured. It is found that for air and lung heterogeneity, for both 6 and 15 MV, all algorithms show maximum deviation for field size 1 × 1 cm2 and gradually reduce when field size increases, except for AAA. For aluminum and bone, all algorithms' deviations are less for 15 MV irrespective of setup. In all heterogeneity setups, 1 × 1 cm2 field showed maximum deviation, except in 6MV bone setup. All algorithms in the study, irrespective of energy and field size, when any heterogeneity is nearer to Dmax, the dose deviation is higher compared to the same heterogeneity far from the Dmax. Also, all algorithms show maximum deviation in lower-density materials compared to high-density materials.

Development of a frameless stereotactic radiosurgery system based on real-time 6D position monitoring and adaptive head motion compensation

NASA Astrophysics Data System (ADS)

Wiersma, Rodney D.; Wen, Zhifei; Sadinski, Meredith; Farrey, Karl; Yenice, Kamil M.

2010-01-01

Stereotactic radiosurgery delivers radiation with great spatial accuracy. To achieve sub-millimeter accuracy for intracranial SRS, a head ring is rigidly fixated to the skull to create a fixed reference. For some patients, the invasiveness of the ring can be highly uncomfortable and not well tolerated. In addition, placing and removing the ring requires special expertise from a neurosurgeon, and patient setup time for SRS can often be long. To reduce the invasiveness, hardware limitations and setup time, we are developing a system for performing accurate head positioning without the use of a head ring. The proposed method uses real-time 6D optical position feedback for turning on and off the treatment beam (gating) and guiding a motor-controlled 3D head motion compensation stage. The setup consists of a central control computer, an optical patient motion tracking system and a 3D motion compensation stage attached to the front of the LINAC couch. A styrofoam head cast was custom-built for patient support and was mounted on the compensation stage. The motion feedback of the markers was processed by the control computer, and the resulting motion of the target was calculated using a rigid body model. If the target deviated beyond a preset position of 0.2 mm, an automatic position correction was performed with stepper motors to adjust the head position via the couch mount motion platform. In the event the target deviated more than 1 mm, a safety relay switch was activated and the treatment beam was turned off. The feasibility of the concept was tested using five healthy volunteers. Head motion data were acquired with and without the use of motion compensation over treatment times of 15 min. On average, test subjects exceeded the 0.5 mm tolerance 86% of the time and the 1.0 mm tolerance 45% of the time without motion correction. With correction, this percentage was reduced to 5% and 2% for the 0.5 mm and 1.0 mm tolerances, respectively.

SU-E-I-85: Absorbed Dose Estimation for a Commercially Available MicroCT Scanner

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lau, A; Ahmad, S; Chen, Y

2015-06-15

Purpose: To quantify the simulated absorbed dose delivered for a typical scan from a commercially available microCT scanner in order to aid in the dose estimation. Methods: The simulations were conducted using the Geant4 Monte Carlo Toolkit (version 10) with the standard electromagnetic classes. The Quantum FX microCT scanner (PerkinElmer, Waltham, MA) was modeled incorporating the energy fluence and angular distributions of generated photons, spatial dimensions of nominal source-to-object and source-to-detector distances. The energy distribution was measured using a spectrometer (X-123CdTe, Amptek Inc., Bedford, USA) with a 300 angular spread from the source for the 90 kVp X-ray beams withmore » no additional filtration. The nominal distances from the source to object consisted of three setups: 154.0 mm, 104.0 mm, and 51.96 mm. Our simulations recorded the dose absorbed in a cylindrical phantom of PMMA with a fixed length of 2 cm and varying radii (10, 20, 30 and 40 mm) using 100 million incident photons. The averaged absorbed dose in the object was then quantified for all setups. An exposure measurement of 417 mR was taken using a Radcal 9095 system utilizing 10×9–180 ion chamber with the given technique of 90 kVp, 63 μA, and 12 s. The exposure rate was also simulated with same setup to calculate the conversion factor of the beam current and the number of incident photons. Results: For a typical cone-beam scan with non-filtered 90kVp, the dose coefficients (the absorbed dose per mAs) were 2.614, 2.549 and 2.467 μGy/mAs under source to object distance of 104 mm for the object diameters of 10 mm, 20 mm and 30 mm, respectively. Conclusion: A look-up table was developed where an investigator can estimate the delivered dose using this particular microCT given the scanning protocol (kVp and mAs) as well as the size of the scanned object.« less

An artificial stress asperity for initialization of spontaneous rupture propagation - a parametric study of a dynamic model with linear slip-weakening friction

NASA Astrophysics Data System (ADS)

Galis, M.; Pelties, C.; Kristek, J.; Moczo, P.

2012-04-01

Artificial procedures are used to initiate spontaneous rupture on faults with the linear slip-weakening (LSW) friction law. Probably the most frequent technique is the stress asperity. It is important to minimize effects of the artificial initialization on the phase of the spontaneous rupture propagation. The effects may strongly depend on the geometry and size of the asperity, spatial distribution of the stress in and around the asperity, and a maximum stress-overshoot value. A square initialization zone with the stress discontinuously falling down at the asperity border to the level of the initial stress has been frequently applied (e.g., in the SCEC verification exercise). Galis et al. (2010) and Bizzarri (2010) independently introduced the elliptical asperity with a smooth spatial stress distribution in and around the asperity. In both papers the width of smoothing/tapering zone was only ad-hoc defined. Numerical simulations indicate that the ADER-DG method can account for a discontinuous-stress initialization more accurately than the FE method. Considering the ADER-DG solution a reference we performed numerical simulations in order to define the width of the smoothing/tapering zone to be used in the FE and FD-FE hybrid methods for spontaneous rupture propagation. We considered different sizes of initialization zone, different shapes of the initialization zone (square, circle, ellipse), different spatial distributions of stress (smooth, discontinuous), and different stress-overshoot values to investigate conditions of the spontaneous rupture propagation. We compare our numerical results with the 2D and 3D estimates by Andrews (1976a,b), Day (1982), Campillo & Ionescu (1997), Favreau at al. (1999) and Uenishi & Rice (2003, 2004). Results of our study may help modelers to better setup the initialization zone in order to avoid, e.g., a too large initialization zone and reduce numerical artifacts.

AQUATOX Features and Tools

EPA Pesticide Factsheets

Numerous features have been included to facilitate the modeling process, from model setup and data input, presentation and analysis of results, to easy export of results to spreadsheet programs for additional analysis.

Model-based setup assistant for progressive tools

NASA Astrophysics Data System (ADS)

Springer, Robert; Gräler, Manuel; Homberg, Werner; Henke, Christian; Trächtler, Ansgar

2018-05-01

In the field of production systems, globalization and technological progress lead to increasing requirements regarding part quality, delivery time and costs. Hence, today's production is challenged much more than a few years ago: it has to be very flexible and produce economically small batch sizes to satisfy consumer's demands and avoid unnecessary stock. Furthermore, a trend towards increasing functional integration continues to lead to an ongoing miniaturization of sheet metal components. In the industry of electric connectivity for example, the miniaturized connectors are manufactured by progressive tools, which are usually used for very large batches. These tools are installed in mechanical presses and then set up by a technician, who has to manually adjust a wide range of punch-bending operations. Disturbances like material thickness, temperatures, lubrication or tool wear complicate the setup procedure. In prospect of the increasing demand of production flexibility, this time-consuming process has to be handled more and more often. In this paper, a new approach for a model-based setup assistant is proposed as a solution, which is exemplarily applied in combination with a progressive tool. First, progressive tools, more specifically, their setup process is described and based on that, the challenges are pointed out. As a result, a systematic process to set up the machines is introduced. Following, the process is investigated with an FE-Analysis regarding the effects of the disturbances. In the next step, design of experiments is used to systematically develop a regression model of the system's behaviour. This model is integrated within an optimization in order to calculate optimal machine parameters and the following necessary adjustment of the progressive tool due to the disturbances. Finally, the assistant is tested in a production environment and the results are discussed.

Investigation of the optimum location of external markers for patient setup accuracy enhancement at external beam radiotherapy

PubMed Central

Torshabi, Ahmad Esmaili; Nankali, Saber

2016-01-01

In external beam radiotherapy, one of the most common and reliable methods for patient geometrical setup and/or predicting the tumor location is use of external markers. In this study, the main challenging issue is increasing the accuracy of patient setup by investigating external markers location. Since the location of each external marker may yield different patient setup accuracy, it is important to assess different locations of external markers using appropriate selective algorithms. To do this, two commercially available algorithms entitled a) canonical correlation analysis (CCA) and b) principal component analysis (PCA) were proposed as input selection algorithms. They work on the basis of maximum correlation coefficient and minimum variance between given datasets. The proposed input selection algorithms work in combination with an adaptive neuro‐fuzzy inference system (ANFIS) as a correlation model to give patient positioning information as output. Our proposed algorithms provide input file of ANFIS correlation model accurately. The required dataset for this study was prepared by means of a NURBS‐based 4D XCAT anthropomorphic phantom that can model the shape and structure of complex organs in human body along with motion information of dynamic organs. Moreover, a database of four real patients undergoing radiation therapy for lung cancers was utilized in this study for validation of proposed strategy. Final analyzed results demonstrate that input selection algorithms can reasonably select specific external markers from those areas of the thorax region where root mean square error (RMSE) of ANFIS model has minimum values at that given area. It is also found that the selected marker locations lie closely in those areas where surface point motion has a large amplitude and a high correlation. PACS number(s): 87.55.km, 87.55.N PMID:27929479

Non-linear transfer characteristics of stimulation and recording hardware account for spurious low-frequency artifacts during amplitude modulated transcranial alternating current stimulation (AM-tACS).

PubMed

Kasten, Florian H; Negahbani, Ehsan; Fröhlich, Flavio; Herrmann, Christoph S

2018-05-31

Amplitude modulated transcranial alternating current stimulation (AM-tACS) has been recently proposed as a possible solution to overcome the pronounced stimulation artifact encountered when recording brain activity during tACS. In theory, AM-tACS does not entail power at its modulating frequency, thus avoiding the problem of spectral overlap between brain signal of interest and stimulation artifact. However, the current study demonstrates how weak non-linear transfer characteristics inherent to stimulation and recording hardware can reintroduce spurious artifacts at the modulation frequency. The input-output transfer functions (TFs) of different stimulation setups were measured. Setups included recordings of signal-generator and stimulator outputs and M/EEG phantom measurements. 6 th -degree polynomial regression models were fitted to model the input-output TFs of each setup. The resulting TF models were applied to digitally generated AM-tACS signals to predict the frequency of spurious artifacts in the spectrum. All four setups measured for the study exhibited low-frequency artifacts at the modulation frequency and its harmonics when recording AM-tACS. Fitted TF models showed non-linear contributions significantly different from zero (all p < .05) and successfully predicted the frequency of artifacts observed in AM-signal recordings. Results suggest that even weak non-linearities of stimulation and recording hardware can lead to spurious artifacts at the modulation frequency and its harmonics. These artifacts were substantially larger than alpha-oscillations of a human subject in the MEG. Findings emphasize the need for more linear stimulation devices for AM-tACS and careful analysis procedures, taking into account low-frequency artifacts to avoid confusion with effects of AM-tACS on the brain. Copyright © 2018 Elsevier Inc. All rights reserved.

Lateralization of spatial information processing in response monitoring

PubMed Central

Stock, Ann-Kathrin; Beste, Christian

2014-01-01

The current study aims at identifying how lateralized multisensory spatial information processing affects response monitoring and action control. In a previous study, we investigated multimodal sensory integration in response monitoring processes using a Simon task. Behavioral and neurophysiologic results suggested that different aspects of response monitoring are asymmetrically and independently allocated to the hemispheres: while efference-copy-based information on the motor execution of the task is further processed in the hemisphere that originally generated the motor command, proprioception-based spatial information is processed in the hemisphere contralateral to the effector. Hence, crossing hands (entering a “foreign” spatial hemifield) yielded an augmented bilateral activation during response monitoring since these two kinds of information were processed in opposing hemispheres. Because the traditional Simon task does not provide the possibility to investigate which aspect of the spatial configuration leads to the observed hemispheric allocation, we introduced a new “double crossed” condition that allows for the dissociation of internal/physiological and external/physical influences on response monitoring processes. Comparing behavioral and neurophysiologic measures of this new condition to those of the traditional Simon task setup, we could demonstrate that the egocentric representation of the physiological effector's spatial location accounts for the observed lateralization of spatial information in action control. The finding that the location of the physical effector had a very small influence on response monitoring measures suggests that this aspect is either less important and/or processed in different brain areas than egocentric physiological information. PMID:24550855

Development of digital reconstructed radiography software at new treatment facility for carbon-ion beam scanning of National Institute of Radiological Sciences.

PubMed

Mori, Shinichiro; Inaniwa, Taku; Kumagai, Motoki; Kuwae, Tsunekazu; Matsuzaki, Yuka; Furukawa, Takuji; Shirai, Toshiyuki; Noda, Koji

2012-06-01

To increase the accuracy of carbon ion beam scanning therapy, we have developed a graphical user interface-based digitally-reconstructed radiograph (DRR) software system for use in routine clinical practice at our center. The DRR software is used in particular scenarios in the new treatment facility to achieve the same level of geometrical accuracy at the treatment as at the imaging session. DRR calculation is implemented simply as the summation of CT image voxel values along the X-ray projection ray. Since we implemented graphics processing unit-based computation, the DRR images are calculated with a speed sufficient for the particular clinical practice requirements. Since high spatial resolution flat panel detector (FPD) images should be registered to the reference DRR images in patient setup process in any scenarios, the DRR images also needs higher spatial resolution close to that of FPD images. To overcome the limitation of the CT spatial resolution imposed by the CT voxel size, we applied image processing to improve the calculated DRR spatial resolution. The DRR software introduced here enabled patient positioning with sufficient accuracy for the implementation of carbon-ion beam scanning therapy at our center.

SWAT Model Configuration, Calibration and Validation for Lake Champlain Basin

EPA Pesticide Factsheets

The Soil and Water Assessment Tool (SWAT) model was used to develop phosphorus loading estimates for sources in the Lake Champlain Basin. This document describes the model setup and parameterization, and presents calibration results.

Modeling and analysis of wet friction clutch engagement dynamics

NASA Astrophysics Data System (ADS)

Iqbal, Shoaib; Al-Bender, Farid; Ompusunggu, Agusmian P.; Pluymers, Bert; Desmet, Wim

2015-08-01

In recent years, there has been a significant increase in the usage of wet-friction clutches. Presently researchers across the globe are involved in improving the performance and lifetime of clutches through testing and simulation. To understand the clutch vibrational and dynamical behavior, an SAE#2 test setup mathematical model based on extended reset-integrator friction model is developed in this paper. In order to take into account the different phases of fluid lubrication during engagement cycle, the model includes the experimentally determined Stribeck function. In addition the model considers the viscous effect and the delay in the actuation pressure signal. The model is validated with the experiments performed on the SAE#2 test setup in both time and frequency domains. By analyzing the set of experimental results, we confirmed that the amplitude of shudder vibration is independent of the amplitude of applied contact pressure fluctuation.