Soil type affects Pinus ponderosa var. scopulorum (Pinaceae) seedling growth in simulated drought experiments.

PubMed

Lindsey, Alexander J; Kilgore, Jason S

2013-08-01

Effects of drought stress and media type interactions on growth of Pinus ponderosa var. scopulorum germinants were investigated. • Soil properties and growth responses under drought were compared across four growth media types: two native soils (dolomitic limestone and granite), a soil-less industry standard conifer medium, and a custom-mixed conifer medium. After 35 d of growth, the seedlings under drought stress (reduced watering) produced less shoot and root biomass than watered control seedlings. Organic media led to decreased root biomass, but increased root length and shoot biomass relative to the mineral soils. • Media type affected root-to-shoot biomass partitioning of P. ponderosa var. scopulorum, which may influence net photosynthetic rates, growth, and long-term seedling survival. Further work should examine how specific soil properties like bulk density and organic matter influence biomass allocation in greenhouse studies.

Soil type affects Pinus ponderosa var. scopulorum (Pinaceae) seedling growth in simulated drought experiments1

PubMed Central

Lindsey, Alexander J.; Kilgore, Jason S.

2013-01-01

• Premise of the study: Effects of drought stress and media type interactions on growth of Pinus ponderosa var. scopulorum germinants were investigated. • Methods and Results: Soil properties and growth responses under drought were compared across four growth media types: two native soils (dolomitic limestone and granite), a soil-less industry standard conifer medium, and a custom-mixed conifer medium. After 35 d of growth, the seedlings under drought stress (reduced watering) produced less shoot and root biomass than watered control seedlings. Organic media led to decreased root biomass, but increased root length and shoot biomass relative to the mineral soils. • Conclusions: Media type affected root-to-shoot biomass partitioning of P. ponderosa var. scopulorum, which may influence net photosynthetic rates, growth, and long-term seedling survival. Further work should examine how specific soil properties like bulk density and organic matter influence biomass allocation in greenhouse studies. PMID:25202578

Soil fauna and soil microflora as possible indicators of soil pollution.

PubMed

Eijsackers, H

1983-09-01

Research on biological indicators of soil pollution is hampered by soil variability and temporal and spatial fluctuations of numbers of soil animals. These characters on the other hand promote a high biological diversity in the soil. A high diversity combined with persistent soil pollutants increases the chance to select good indicators. However research on these topics is still limited. Examples of specific indicators are the changed arthropod species patterns due to pesticide influence and the changed soil enzyme activity under the influence of specific heavy metals. Another approach is to look for organisms that give a general indication of soil pollution. In this respect the earthworm species Allolobophora caliginosa proved to be sensitive for different types of manure especially pig manure with copper, for sewage sludge, for municipal waste compost and for fly ash. A third way of indication is by organisms accumulating pollutants. For some heavy metals (Cd, Zn), earthworms are very efficient accumulators. More research is needed especially on the specific relation between biological responses and abiotic soil characteristics.

Microbial Community and Functional Structure Significantly Varied among Distinct Types of Paddy Soils But Responded Differently along Gradients of Soil Depth Layers

PubMed Central

Bai, Ren; Wang, Jun-Tao; Deng, Ye; He, Ji-Zheng; Feng, Kai; Zhang, Li-Mei

2017-01-01

Paddy rice fields occupy broad agricultural area in China and cover diverse soil types. Microbial community in paddy soils is of great interest since many microorganisms are involved in soil functional processes. In the present study, Illumina Mi-Seq sequencing and functional gene array (GeoChip 4.2) techniques were combined to investigate soil microbial communities and functional gene patterns across the three soil types including an Inceptisol (Binhai), an Oxisol (Leizhou), and an Ultisol (Taoyuan) along four profile depths (up to 70 cm in depth) in mesocosm incubation columns. Detrended correspondence analysis revealed that distinctly differentiation in microbial community existed among soil types and profile depths, while the manifest variance in functional structure was only observed among soil types and two rice growth stages, but not across profile depths. Along the profile depth within each soil type, Acidobacteria, Chloroflexi, and Firmicutes increased whereas Cyanobacteria, β-proteobacteria, and Verrucomicrobia declined, suggesting their specific ecophysiological properties. Compared to bacterial community, the archaeal community showed a more contrasting pattern with the predominant groups within phyla Euryarchaeota, Thaumarchaeota, and Crenarchaeota largely varying among soil types and depths. Phylogenetic molecular ecological network (pMEN) analysis further indicated that the pattern of bacterial and archaeal communities interactions changed with soil depth and the highest modularity of microbial community occurred in top soils, implying a relatively higher system resistance to environmental change compared to communities in deeper soil layers. Meanwhile, microbial communities had higher connectivity in deeper soils in comparison with upper soils, suggesting less microbial interaction in surface soils. Structure equation models were developed and the models indicated that pH was the most representative characteristics of soil type and identified as the key driver in shaping both bacterial and archaeal community structure, but did not directly affect microbial functional structure. The distinctive pattern of microbial taxonomic and functional composition along soil profiles implied functional redundancy within these paddy soils. PMID:28611747

Microbial Community and Functional Structure Significantly Varied among Distinct Types of Paddy Soils But Responded Differently along Gradients of Soil Depth Layers.

PubMed

Bai, Ren; Wang, Jun-Tao; Deng, Ye; He, Ji-Zheng; Feng, Kai; Zhang, Li-Mei

2017-01-01

Paddy rice fields occupy broad agricultural area in China and cover diverse soil types. Microbial community in paddy soils is of great interest since many microorganisms are involved in soil functional processes. In the present study, Illumina Mi-Seq sequencing and functional gene array (GeoChip 4.2) techniques were combined to investigate soil microbial communities and functional gene patterns across the three soil types including an Inceptisol (Binhai), an Oxisol (Leizhou), and an Ultisol (Taoyuan) along four profile depths (up to 70 cm in depth) in mesocosm incubation columns. Detrended correspondence analysis revealed that distinctly differentiation in microbial community existed among soil types and profile depths, while the manifest variance in functional structure was only observed among soil types and two rice growth stages, but not across profile depths. Along the profile depth within each soil type, Acidobacteria , Chloroflexi , and Firmicutes increased whereas Cyanobacteria , β -proteobacteria , and Verrucomicrobia declined, suggesting their specific ecophysiological properties. Compared to bacterial community, the archaeal community showed a more contrasting pattern with the predominant groups within phyla Euryarchaeota , Thaumarchaeota , and Crenarchaeota largely varying among soil types and depths. Phylogenetic molecular ecological network (pMEN) analysis further indicated that the pattern of bacterial and archaeal communities interactions changed with soil depth and the highest modularity of microbial community occurred in top soils, implying a relatively higher system resistance to environmental change compared to communities in deeper soil layers. Meanwhile, microbial communities had higher connectivity in deeper soils in comparison with upper soils, suggesting less microbial interaction in surface soils. Structure equation models were developed and the models indicated that pH was the most representative characteristics of soil type and identified as the key driver in shaping both bacterial and archaeal community structure, but did not directly affect microbial functional structure. The distinctive pattern of microbial taxonomic and functional composition along soil profiles implied functional redundancy within these paddy soils.

TREATABILITY POTENTIAL FOR EPA LISTED HAZARDOUS WASTES IN SOIL

EPA Science Inventory

This study developed comprehensive screening data on the treatability in soil of: (a) specific listed hazardous organic chemicals, and (b) waste sludge from explosives production (K044) and related chemicals. Laboratory experiments were conducted using two soil types, an acidic s...

Soil Temperature and Moisture Profile (STAMP) System Handbook

DOE Office of Scientific and Technical Information (OSTI.GOV)

Cook, David R.

The soil temperature and moisture profile system (STAMP) provides vertical profiles of soil temperature, soil water content (soil-type specific and loam type), plant water availability, soil conductivity, and real dielectric permittivity as a function of depth below the ground surface at half-hourly intervals, and precipitation at one-minute intervals. The profiles are measured directly by in situ probes at all extended facilities of the SGP climate research site. The profiles are derived from measurements of soil energy conductivity. Atmospheric scientists use the data in climate models to determine boundary conditions and to estimate the surface energy flux. The data are alsomore » useful to hydrologists, soil scientists, and agricultural scientists for determining the state of the soil. The STAMP system replaced the SWATS system in early 2016.« less

Ecotoxicity of boric acid in standard laboratory tests with plants and soil organisms.

PubMed

Princz, Juliska; Becker, Leonie; Scheffczyk, Adam; Stephenson, Gladys; Scroggins, Rick; Moser, Thomas; Römbke, Jörg

2017-05-01

To verify the continuous sensitivity of ecotoxicological tests (mainly the test organisms), reference substances with known toxicity are regularly tested. Ideally, this substance(s) would lack specificity in its mode action, be bioavailable and readily attainable with cost-effective means of chemical characterization. Boric acid has satisfied these criteria, but has most recently been characterized as a substance of very high concern, due to reproductive effects in humans, thus limiting its recommendation as an ideal reference toxicant. However, there is probably no other chemical for which ecotoxicity in soil has been so intensively studied; an extensive literature review yielded lethal (including avoidance) and sublethal data for 38 taxa. The ecotoxicity data were evaluated using species sensitivity distributions, collectively across all taxa, and separately according to species type, endpoints, soil type and duration. The lack of specificity in the mode of action yielded broad toxicity among soil taxa and soil types, and provided a collective approach to assessing species sensitivity, while taking into consideration differences in test methodologies and exposure durations. Toxicity was species-specific with Folsomia candida and enchytraied species demonstrating the most sensitivity; among plants, the following trend occurred: dicotyledonous (more sensitive) ≫ monocotyledonous ≫ gymnosperm species. Sensitivity was also time and endpoint specific, with endpoints such as lethality and avoidance being less sensitive than reproduction effects. Furthermore, given the breadth of data and toxicity demonstrated by boric acid, lessons learned from its evaluation are discussed to recommend the properties required by an ideal reference substance for the soil compartment.

Cell-type specificity of lung cancer associated with low-dose soil heavy metal contamination in Taiwan: An ecological study

PubMed Central

2013-01-01

Background Numerous studies have examined the association between heavy metal contamination (including arsenic [As], cadmium [Cd], chromium [Cr], copper [Cu], mercury [Hg], nickel [Ni], lead [Pb], and zinc [Zn]) and lung cancer. However, data from previous studies on pathological cell types are limited, particularly regarding exposure to low-dose soil heavy metal contamination. The purpose of this study was to explore the association between soil heavy metal contamination and lung cancer incidence by specific cell type in Taiwan. Methods We conducted an ecological study and calculated the annual averages of eight soil heavy metals (i.e., As, Cd, Cr, Cu, Hg, Ni, Pb, and Zn) by using data from the Taiwan Environmental Protection Administration from1982 to 1986. The age-standardized incidence rates of lung cancer according to two major pathological types (adenocarcinoma [AC] and squamous cell carcinoma [SCC]) were obtained from the National Cancer Registry Program conducted in Taiwan from 2001 to 2005. A geographical information system was used to plot the maps of soil heavy metal concentration and lung cancer incidence rates. Poisson regression models were used to obtain the adjusted relative ratios (RR) and 95% confidence intervals (CI) for the lung cancer incidence associated with soil heavy metals. Results For males, the trend test for lung SCC incidence caused by exposure to Cr, Cu, Hg, Ni, and Zn showed a statistically significant dose–response relationship. However, for lung AC, only Cu and Ni had a significant dose–response relationship. As for females, those achieving a statistically significant dose–response relationship for the trend test were Cr (P = 0.02), Ni (P = 0.02), and Zn (P= 0.02) for lung SCC, and Cu (P < 0.01) and Zn (P = 0.02) for lung AC. Conclusion The current study suggests that a dose–response relationship exists between low-dose soil heavy metal concentration and lung cancer occurrence by specific cell-type; however, the relevant mechanism should be explored further. PMID:23575356

Integrating soil ecological knowledge into restoration management

Treesearch

Liam Heneghan; Susan P. Miller; Sara Baer; Mac A. Callaham; James Montgomery; Mitchell Pavao-Zuckerman; Charles C. Rhoades; Sarah Richardson

2008-01-01

The variability in the type of ecosystem degradation and the specificity of restoration goals can challenge restorationists' ability to generalize about approaches that lead to restoration success. The discipline of soil ecology, which emphasizes both soil organisms and ecosystem processes, has generated a body of knowledge that can be generally useful in...

Soil factors involved in the diversity and structure of soil bacterial communities in commercial organic olive orchards in Southern Spain.

PubMed

Landa, B B; Montes-Borrego, M; Aranda, S; Soriano, M A; Gómez, J A; Navas-Cortés, J A

2014-04-01

Nowadays, there is a tendency in olive production systems to reduce tillage or keep a vegetative cover to reduce soil erosion and degradation. However, there is scarce information on the effects of different soil management systems (SMS) in soil bacterial community composition of olive groves. In this study, we have evaluated the effects of soil type and different SMS implemented to control weeds in the structure and diversity of bacterial communities of 58 soils in the two geographic areas that best represent the organic olive production systems in Spain. Bacterial community composition assessed by frequency and intensity of occurrence of terminal restriction profiles (TRFs) derived from terminal restriction fragment length polymorphism (T-RFLP) analysis of amplified 16S ribosomal deoxyribonucleic acid were strongly correlated with soil type/field site (Eutric/Calcaric) that differed mainly in soil particle size distribution and soil pH, followed by a strong effect of SMS, in that order. Canonical discriminant (CD) analysis of TRFs properly classified all of the olive orchard soils as belonging to their respective soil type or SMS. Furthermore, only a small set of TRFs were enough to clearly and significantly differentiate soil samples according to soil type or SMS. Those specific TRFs could be used as bioindicators to assess the effect of changes in SMS aimed to enhance soil quality in olive production systems. © 2014 Society for Applied Microbiology and John Wiley & Sons Ltd.

Lack of host specificity leads to independent assortment of dipterocarps and ectomycorrhizal fungi across a soil fertility gradient.

PubMed

Peay, Kabir G; Russo, Sabrina E; McGuire, Krista L; Lim, Zhenyu; Chan, Ju Ping; Tan, Sylvester; Davies, Stuart J

2015-08-01

Plants interact with a diversity of microorganisms, and there is often concordance in their community structures. Because most community-level studies are observational, it is unclear if such concordance arises because of host specificity, in which microorganisms or plants limit each other's occurrence. Using a reciprocal transplant experiment, we tested the hypothesis that host specificity between trees and ectomycorrhizal fungi determines patterns of tree and fungal soil specialisation. Seedlings of 13 dipterocarp species with contrasting soil specialisations were seeded into plots crossing soil type and canopy openness. Ectomycorrhizal colonists were identified by DNA sequencing. After 2.5 years, we found no evidence of host specificity. Rather, soil environment was the primary determinant of ectomycorrhizal diversity and composition on seedlings. Despite their close symbiosis, our results show that ectomycorrhizal fungi and tree communities in this Bornean rain forest assemble independently of host-specific interactions, raising questions about how mutualism shapes the realised niche. © 2015 John Wiley & Sons Ltd/CNRS.

Bare soil and rill formation following wildfires, fuel reduction treatments, and pine plantations in the southern Sierra Nevada, California, USA

Treesearch

Neil H. Berg; David L. Azuma

2010-01-01

Accelerated erosion commonly occurs after wildfires on forested lands. As burned areas recover, erosion returns towards prefire rates depending on many site-specific characteristics, including fire severity, vegetation type, soil type and climate. In some areas, erosion recovery can be rapid, particularly where revegetation is quick. Erosion recovery is less well...

Design and evaluation of a bioreactor with application to forensic burial environments.

PubMed

Dunphy, Melissa A; Weisensee, Katherine E; Mikhailova, Elena A; Harman, Melinda K

2015-12-01

Existing forensic taphonomic methods lack specificity in estimating the postmortem interval (PMI) in the period following active decomposition. New methods, such as the use of citrate concentration in bone, are currently being considered; however, determining the applicability of these methods in differing environmental contexts is challenging. This research aims to design a forensic bioreactor that can account for environmental factors known to impact decomposition, specifically temperature, moisture, physical damage from animals, burial depth, soil pH, and organic matter content. These forensically relevant environmental variables were characterized in a soil science context. The resulting metrics were soil temperature regime, soil moisture regime, slope, texture, soil horizon, cation exchange capacity, soil pH, and organic matter content. Bioreactor chambers were constructed using sterilized thin-walled polystyrene boxes housed in calibrated temperature units. Gravesoil was represented using mineral soil (Ultisols), and organic soil proxy for Histosols, horticulture mix. Gravesoil depth was determined using mineral soil horizons A and Bt2 to simulate surface scatter and shallow grave burial respectively. A total of fourteen different environmental conditions were created and controlled successfully over a 90-day experiment. These results demonstrate successful implementation and control of forensic bioreactor simulating precise environments in a single research location, rather than site-specific testing occurring in different geographic regions. Bone sections were grossly assessed for weathering characteristics, which revealed notable differences related to exposure to different temperature regimes and soil types. Over the short 90-day duration of this experiment, changes in weathering characteristics were more evident across the different temperature regimes rather than the soil types. Using this methodology, bioreactor systems can be created to replicate many different clandestine burial contexts, which will allow for the more rapid understanding of environmental effects on skeletal remains. Copyright © 2015 Elsevier Ireland Ltd. All rights reserved.

Statistical Modelling of the Soil Dielectric Constant

NASA Astrophysics Data System (ADS)

Usowicz, Boguslaw; Marczewski, Wojciech; Bogdan Usowicz, Jerzy; Lipiec, Jerzy

2010-05-01

The dielectric constant of soil is the physical property being very sensitive on water content. It funds several electrical measurement techniques for determining the water content by means of direct (TDR, FDR, and others related to effects of electrical conductance and/or capacitance) and indirect RS (Remote Sensing) methods. The work is devoted to a particular statistical manner of modelling the dielectric constant as the property accounting a wide range of specific soil composition, porosity, and mass density, within the unsaturated water content. Usually, similar models are determined for few particular soil types, and changing the soil type one needs switching the model on another type or to adjust it by parametrization of soil compounds. Therefore, it is difficult comparing and referring results between models. The presented model was developed for a generic representation of soil being a hypothetical mixture of spheres, each representing a soil fraction, in its proper phase state. The model generates a serial-parallel mesh of conductive and capacitive paths, which is analysed for a total conductive or capacitive property. The model was firstly developed to determine the thermal conductivity property, and now it is extended on the dielectric constant by analysing the capacitive mesh. The analysis is provided by statistical means obeying physical laws related to the serial-parallel branching of the representative electrical mesh. Physical relevance of the analysis is established electrically, but the definition of the electrical mesh is controlled statistically by parametrization of compound fractions, by determining the number of representative spheres per unitary volume per fraction, and by determining the number of fractions. That way the model is capable covering properties of nearly all possible soil types, all phase states within recognition of the Lorenz and Knudsen conditions. In effect the model allows on generating a hypothetical representative of the soil type, and that way it enables clear comparing to results from other soil type dependent models. The paper is focused on proper representing possible range of porosity in commonly existing soils. This work is done with aim of implementing the statistical-physical model of the dielectric constant to a use in the model CMEM (Community Microwave Emission Model), applicable to SMOS (Soil Moisture and Ocean Salinity ESA Mission) data. The input data to the model clearly accepts definition of soil fractions in common physical measures, and in opposition to other empirical models, does not need calibrating. It is not dependent on recognition of the soil by type, but instead it offers the control of accuracy by proper determination of the soil compound fractions. SMOS employs CMEM being funded only by the sand-clay-silt composition. Common use of the soil data, is split on tens or even hundreds soil types depending on the region. We hope that only by determining three element compounds of sand-clay-silt, in few fractions may help resolving the question of relevance of soil data to the input of CMEM, for SMOS. Now, traditionally employed soil types are converted on sand-clay-silt compounds, but hardly cover effects of other specific properties like the porosity. It should bring advantageous effects in validating SMOS observation data, and is taken for the aim in the Cal/Val project 3275, in the campaigns for SVRT (SMOS Validation and Retrieval Team). Acknowledgements. This work was funded in part by the PECS - Programme for European Cooperating States, No. 98084 "SWEX/R - Soil Water and Energy Exchange/Research".

Potential soil cleanup objectives for nitrogen-containing fertilizers at agrichemical facilities

USGS Publications Warehouse

Roy, W.R.; Krapac, I.G.

2006-01-01

Accidental and incidental chemical releases of nitrogen-containing fertilizers occur at retail agrichemical facilities. Because contaminated soil may threaten groundwater quality, the facility may require some type of site remediation. The purpose of this study was to apply the concepts of the Soil Screening Levels of the U.S. Environmental Protection Agency to derive soil cleanup objectives (SCO) that are protective of groundwater quality in Illinois for nitrogen as nitrate and as ammonium. The Soil Screening Levels are based on the solute transport mechanisms of sorption, volatilization, and groundwater dilution, and the contaminant-specific groundwater cleanup objective used to derive the SCO. Because nitrate is relatively unreactive, only groundwater dilution could be taken into account in the derivation of a SCO. Using a default groundwater objective for potable groundwater, an SCO of 38 mg N-NO3/kg was derived. For ammonium, however, the extent of sorption was measured using an uncontaminated, surface-soil sample (0 to 15 cm) of 10 different soil types that occur in Illinois and three gravel-fill samples from three different agrichemical facilities. Using a default groundwater objective, an SCO was derived for each soil type. The median SCO was 989 mg N-NH4/kg. The SCO calculated for each of the 10 soil and 3 fill samples was positively correlated with cation exchange capacity, clay content, and surface area. It was concluded that this approach can be used to derive either default of site-specific SCOs for nitrogen as nitrate and as ammonium for chemical releases. Copyright ?? Taylor & Francis Group, LLC.

Prediction of soil organic carbon partition coefficients by soil column liquid chromatography.

PubMed

Guo, Rongbo; Liang, Xinmiao; Chen, Jiping; Wu, Wenzhong; Zhang, Qing; Martens, Dieter; Kettrup, Antonius

2004-04-30

To avoid the limitation of the widely used prediction methods of soil organic carbon partition coefficients (KOC) from hydrophobic parameters, e.g., the n-octanol/water partition coefficients (KOW) and the reversed phase high performance liquid chromatographic (RP-HPLC) retention factors, the soil column liquid chromatographic (SCLC) method was developed for KOC prediction. The real soils were used as the packing materials of RP-HPLC columns, and the correlations between the retention factors of organic compounds on soil columns (ksoil) and KOC measured by batch equilibrium method were studied. Good correlations were achieved between ksoil and KOC for three types of soils with different properties. All the square of the correlation coefficients (R2) of the linear regression between log ksoil and log KOC were higher than 0.89 with standard deviations of less than 0.21. In addition, the prediction of KOC from KOW and the RP-HPLC retention factors on cyanopropyl (CN) stationary phase (kCN) was comparatively evaluated for the three types of soils. The results show that the prediction of KOC from kCN and KOW is only applicable to some specific types of soils. The results obtained in the present study proved that the SCLC method is appropriate for the KOC prediction for different types of soils, however the applicability of using hydrophobic parameters to predict KOC largely depends on the properties of soil concerned.

High-resolution stable isotope monitoring reveals differential vegetation-soil water feedbacks among plant functional types

NASA Astrophysics Data System (ADS)

Volkmann, T. H. M.; Haberer, K.; Troch, P. A. A.; Gessler, A.; Weiler, M.

2016-12-01

Understanding the linked dynamics of rain water recharge to soils and its utilization by plants is critical for predicting the impact of climate and land use changes on the productivity of ecosystems and the hydrologic cycle. While plants require vast quantities of water from the soil to sustain growth and function, they exert important direct and indirect controls on the movement of water through the rooted soil horizons, thereby potentially affecting their own resource availability. However, the specific ecohydrological belowground processes associated with different plant types and their rooting systems have been difficult to quantify with traditional methods. Here, we report on the use of techniques for monitoring stable isotopes in soil and plant water pools that allow us to track water infiltration and root uptake dynamics non-destructively and in high resolution. The techniques were applied in controlled rain pulse experiments with distinct plant types (grass, deciduous trees, grapevine) that we let develop on an initially uniform soil for two years. Our results show that plant species and types differed widely in their plasticity and pattern of root uptake under variable water availability. Thereby, and through notably co-acting indirect effects related to differential root system traits and co-evolution of soil properties, the different plants induced contrasting hydrological dynamics in the soil they had inhabited for only a short period of time. Taken together, our data suggest that the studied soil-vegetation systems evolved a positive infiltration-uptake feedback in which hydrological flow pathways underlying different species diverged in a way that complemented their specific water utilization strategy. Such a feedback could present an indirect competitive mechanism by which plants improve their own water supply and modulate hydrological cycling at the land surface. The ability to directly measure this feedback using in situ isotope methodology highlights the great potential for stable isotope research to improve our understanding of the soil-vegetation-atmosphere system.

Linking soil type and rainfall characteristics towards estimation of surface evaporative capacitance

NASA Astrophysics Data System (ADS)

Or, D.; Bickel, S.; Lehmann, P.

2017-12-01

Separation of evapotranspiration (ET) to evaporation (E) and transpiration (T) components for attribution of surface fluxes or for assessment of isotope fractionation in groundwater remains a challenge. Regional estimates of soil evaporation often rely on plant-based (Penman-Monteith) ET estimates where is E is obtained as a residual or a fraction of potential evaporation. We propose a novel method for estimating E from soil-specific properties, regional rainfall characteristics and considering concurrent internal drainage that shelters soil water from evaporation. A soil-dependent evaporative characteristic length defines a depth below which soil water cannot be pulled to the surface by capillarity; this depth determines the maximal soil evaporative capacitance (SEC). The SEC is recharged by rainfall and subsequently emptied by competition between drainage and surface evaporation (considering canopy interception evaporation). We show that E is strongly dependent on rainfall characteristics (mean annual, number of storms) and soil textural type, with up to 50% of rainfall lost to evaporation in loamy soil. The SEC concept applied to different soil types and climatic regions offers direct bounds on regional surface evaporation independent of plant-based parameterization or energy balance calculations.

The relative importance of vertical soil nutrient heterogeneity, and mean and depth-specific soil nutrient availabilities for tree species richness in tropical forests and woodlands.

PubMed

Shirima, Deo D; Totland, Ørjan; Moe, Stein R

2016-11-01

The relative importance of resource heterogeneity and quantity on plant diversity is an ongoing debate among ecologists, but we have limited knowledge on relationships between tree diversity and heterogeneity in soil nutrient availability in tropical forests. We expected tree species richness to be: (1) positively related to vertical soil nutrient heterogeneity; (2) negatively related to mean soil nutrient availability; and (3) more influenced by nutrient availability in the upper than lower soil horizons. Using a data set from 60, 20 × 40-m plots in a moist forest, and 126 plots in miombo woodlands in Tanzania, we regressed tree species richness against vertical soil nutrient heterogeneity, both depth-specific (0-15, 15-30, and 30-60 cm) and mean soil nutrient availability, and soil physical properties, with elevation and measures of anthropogenic disturbance as co-variables. Overall, vertical soil nutrient heterogeneity was the best predictor of tree species richness in miombo but, contrary to our prediction, the relationships between tree species richness and soil nutrient heterogeneity were negative. In the moist forest, mean soil nutrient availability explained considerable variations in tree species richness, and in line with our expectations, these relationships were mainly negative. Soil nutrient availability in the top soil layer explained more of the variation in tree species richness than that in the middle and lower layers in both vegetation types. Our study shows that vertical soil nutrient heterogeneity and mean availability can influence tree species richness at different magnitudes in intensively utilized tropical vegetation types.

Bolivian satellite technology program on ERTS natural resources

NASA Technical Reports Server (NTRS)

Brockmann, H. C. (Principal Investigator); Bartoluccic C., L.; Hoffer, R. M.; Levandowski, D. W.; Ugarte, I.; Valenzuela, R. R.; Urena E., M.; Oros, R.

1977-01-01

The author has identified the following significant results. Application of digital classification for mapping land use permitted the separation of units at more specific levels in less time. A correct classification of data in the computer has a positive effect on the accuracy of the final products. Land use unit comparison with types of soils as represented by the colors of the coded map showed a class relation. Soil types in relation to land cover and land use demonstrated that vegetation was a positive factor in soils classification. Groupings of image resolution elements (pixels) permit studies of land use at different levels, thereby forming parameters for the classification of soils.

A procedure for calculating daily moisture stress and its utility in regressions of growth and weather

Treesearch

Robert Zahner; Albert R. Stage

1966-01-01

A method is described for computing daily values of moisture stress on forest vegetation, or water deficits, based on the differences between Thornthwaite's potential evapotranspiration and computed soil-moisture depletion. More realistic functions are used for soil-moisture depletion on specific soil types than have been customary. These functions relate daily...

Different low-molecular-mass organic acids specifically control leaching of arsenic and lead from contaminated soil.

PubMed

Ash, Christopher; Tejnecký, Václav; Borůvka, Luboš; Drábek, Ondřej

2016-04-01

Low-molecular-mass organic acids (LMMOA) are of key importance for mobilisation and fate of metals in soil, by functioning as ligands that increase the amount of dissolved metal in solution or by dissociation of metal binding minerals. Column leaching experiments were performed on soil polluted with As and Pb, in order to determine the specificity of LMMOA related release for individual elements, at varying organic acid concentrations. Acetic, citric and oxalic acids were applied in 12h leaching experiments over a concentration range (0.5-25 mM) to soil samples that represent organic and mineral horizons. The leaching of As followed the order: oxalic>citric>acetic acid in both soils. Arsenic leaching was attributed primarily to ligand-enhanced dissolution of mineral oxides followed by As released into solution, as shown by significant correlation between oxalic and citric acids and content of Al and Fe in leaching solutions. Results suggest that subsurface mineral soil layers are more vulnerable to As toxicity. Leaching of Pb from both soils followed the order: citric>oxalic>acetic acid. Mineral soil samples were shown to be more susceptible to leaching of Pb than samples characterised by a high content of organic matter. The leaching efficiency of citric acid was attributed to formation of stable complexes with Pb ions, which other acids are not capable of. Results obtained in the study are evidence that the extent of As and Pb leaching in contaminated surface and subsurface soil depends significantly on the types of carboxylic acid involved. The implications of the type of acid and the specific element that can be mobilised become increasingly significant where LMMOA concentrations are highest, such as in rhizosphere soil. Copyright © 2016 Elsevier B.V. All rights reserved.

Different low-molecular-mass organic acids specifically control leaching of arsenic and lead from contaminated soil

NASA Astrophysics Data System (ADS)

Ash, Christopher; Tejnecký, Václav; Borůvka, Luboš; Drábek, Ondřej

2016-04-01

Low-molecular-mass organic acids (LMMOA) are of key importance for mobilisation and fate of metals in soil, by functioning as ligands that increase the amount of dissolved metal in solution or by dissociation of metal binding minerals. Column leaching experiments were performed on soil polluted with As and Pb, in order to determine the specificity of LMMOA related release for individual elements, at varying organic acid concentrations. Acetic, citric and oxalic acids were applied in 12 h leaching experiments over a concentration range (0.5-25 mM) to soil samples that represent organic and mineral horizons. The leaching of As followed the order: oxalic > citric > acetic acid in both soils. Arsenic leaching was attributed primarily to ligand-enhanced dissolution of mineral oxides followed by As released into solution, as shown by significant correlation between oxalic and citric acids and content of Al and Fe in leaching solutions. Results suggest that subsurface mineral soil layers are more vulnerable to As toxicity. Leaching of Pb from both soils followed the order: citric > oxalic > acetic acid. Mineral soil samples were shown to be more susceptible to leaching of Pb than samples characterised by a high content of organic matter. The leaching efficiency of citric acid was attributed to formation of stable complexes with Pb ions, which other acids are not capable of. Results obtained in the study are evidence that the extent of As and Pb leaching in contaminated surface and subsurface soil depends significantly on the types of carboxylic acid involved. The implications of the type of acid and the specific element that can be mobilised become increasingly significant where LMMOA concentrations are highest, such as in rhizosphere soil.

Riparian habitat on the Humboldt River, Deeth to Elko, Nevada

NASA Technical Reports Server (NTRS)

Price, K. P.; Ridd, M. K.

1983-01-01

A map inventory of the major habitat types existing along the Humbolt River riparian zone in Nevada is described. Through aerialphotography, 16 riparian habitats are mapped that describe the ecological relationships between soil and vegetation types, flooding and soil erosion, and the various management practices employed to date. The specific land and water management techniques and their impact on the environment are considered.

Response of deep soil moisture to land use and afforestation in the semi-arid Loess Plateau, China

NASA Astrophysics Data System (ADS)

Yang, Lei; Wei, Wei; Chen, Liding; Mo, Baoru

2012-12-01

SummarySoil moisture is an effective water source for plant growth in the semi-arid Loess Plateau of China. Characterizing the response of deep soil moisture to land use and afforestation is important for the sustainability of vegetation restoration in this region. In this paper, the dynamics of soil moisture were quantified to evaluate the effect of land use on soil moisture at a depth of 2 m. Specifically, the gravimetric soil moisture content was measured in the soil layer between 0 and 8 m for five land use types in the Longtan catchment of the western Loess Plateau. The land use types included traditional farmland, native grassland, and lands converted from traditional farmland (pasture grassland, shrubland and forestland). Results indicate that the deep soil moisture content decreased more than 35% after land use conversion, and a soil moisture deficit appeared in all types of land with introduced vegetation. The introduced vegetation decreased the soil moisture content to levels lower than the reference value representing no human impact in the entire 0-8 m soil profile. No significant differences appeared between different land use types and introduced vegetation covers, especially in deeper soil layers, regardless of which plant species were introduced. High planting density was found to be the main reason for the severe deficit of soil moisture. Landscape management activities such as tillage activities, micro-topography reconstruction, and fallowed farmland affected soil moisture in both shallow and deep soil layers. Tillage and micro-topography reconstruction can be used as effective countermeasures to reduce the soil moisture deficit due to their ability to increase soil moisture content. For sustainable vegetation restoration in a vulnerable semi-arid region, the plant density should be optimized with local soil moisture conditions and appropriate landscape management practices.

S-World: A high resolution global soil database for simulation modelling (Invited)

NASA Astrophysics Data System (ADS)

Stoorvogel, J. J.

2013-12-01

There is an increasing call for high resolution soil information at the global level. A good example for such a call is the Global Gridded Crop Model Intercomparison carried out within AgMIP. While local studies can make use of surveying techniques to collect additional techniques this is practically impossible at the global level. It is therefore important to rely on legacy data like the Harmonized World Soil Database. Several efforts do exist that aim at the development of global gridded soil property databases. These estimates of the variation of soil properties can be used to assess e.g., global soil carbon stocks. However, they do not allow for simulation runs with e.g., crop growth simulation models as these models require a description of the entire pedon rather than a few soil properties. This study provides the required quantitative description of pedons at a 1 km resolution for simulation modelling. It uses the Harmonized World Soil Database (HWSD) for the spatial distribution of soil types, the ISRIC-WISE soil profile database to derive information on soil properties per soil type, and a range of co-variables on topography, climate, and land cover to further disaggregate the available data. The methodology aims to take stock of these available data. The soil database is developed in five main steps. Step 1: All 148 soil types are ordered on the basis of their expected topographic position using e.g., drainage, salinization, and pedogenesis. Using the topographic ordering and combining the HWSD with a digital elevation model allows for the spatial disaggregation of the composite soil units. This results in a new soil map with homogeneous soil units. Step 2: The ranges of major soil properties for the topsoil and subsoil of each of the 148 soil types are derived from the ISRIC-WISE soil profile database. Step 3: A model of soil formation is developed that focuses on the basic conceptual question where we are within the range of a particular soil property at a particular location given a specific soil type. The soil properties are predicted for each grid cell based on the soil type, the corresponding ranges of soil properties, and the co-variables. Step 4: Standard depth profiles are developed for each of the soil types using the diagnostic criteria of the soil types and soil profile information from the ISRIC-WISE database. The standard soil profiles are combined with the the predicted values for the topsoil and subsoil yielding unique soil profiles at each location. Step 5: In a final step, additional soil properties are added to the database using averages for the soil types and pedo-transfer functions. The methodology, denominated S-World (Soils of the World), results in readily available global maps with quantitative pedon data for modelling purposes. It forms the basis for the Global Gridded Crop Model Intercomparison carried out within AgMIP.

Agricultural land cover mapping in the context of a geographically referenced digital information system. [Carroll, Macon, and Gentry Counties, Missouri

NASA Technical Reports Server (NTRS)

Stoner, E. R.

1982-01-01

The introduction of soil map information to the land cover mapping process can improve discrimination of land cover types and reduce confusion among crop types that may be caused by soil-specific management practices and background reflectance characteristics. Multiple dates of LANDSAT MSS digital were analyzed for three study areas in northern Missouri to produce cover types for major agricultural land cover classes. Digital data bases were then developed by adding ancillary data such as digitized soil and transportation network information to the LANDSAT-derived cover type map. Procedures were developed to manipulate the data base parameters to extract information applicable to user requirements. An agricultural information system combining such data can be used to determine the productive capacity of land to grow crops, fertilizer needs, chemical weed control rates, irrigation suitability, and trafficability of soil for planting.

In situ burning of oil in coastal marshes. 1. Vegetation recovery and soil temperature as a function of water depth, oil type, and marsh type.

PubMed

Lin, Qianxin; Mendelssohn, Irving A; Bryner, Nelson P; Walton, William D

2005-03-15

In-situ burning of oiled wetlands potentially provides a cleanup technique that is generally consistent with present wetland management procedures. The effects of water depth (+10, +2, and -2 cm), oil type (crude and diesel), and oil penetration of sediment before the burn on the relationship between vegetation recovery and soil temperature for three coastal marsh types were investigated. The water depth over the soil surface during in-situ burning was a key factor controlling marsh plant recovery. Both the 10- and 2-cm water depths were sufficient to protect marsh vegetation from burning impacts, with surface soil temperatures of <35 and 48 degrees C, respectively. Plant survival rate and growth responses at these water depth burns were not significantly different from the unburned control. In contrast, a water table 2 cm below the soil surface during the burn resulted in high soil temperatures, with 90-200 degrees C at 0-0.5 cm soil depth and 55-75 degrees C at 1-2 cm soil depth. The 2-cm soil exposure to fire significantly impeded the post-burn recovery of Spartina alterniflora and Sagittaria lancifolia but did not detrimentally affect the recovery of Spartina patens and Distichlis spicata. Oil type (crude vs diesel) and oil applied to the marsh soil surface (0.5 L x m(-2)) before the burn did not significantly affect plant recovery. Thus, recovery is species-specific when no surface water exists. Even water at the soil surface will most likely protect wetland plants from burning impact.

Dynamic arsenic aging processes and their mechanisms in nine types of Chinese soils.

PubMed

Wang, Yanan; Zeng, Xibai; Lu, Yahai; Bai, Lingyu; Su, Shiming; Wu, Cuixia

2017-11-01

Although specific soil properties controlling the arsenic (As) aging process have been studied extensively, few investigations have attempted to determine how soil types influence As bioavailability and fractionations in soils. Nine types of soil were selected from typical grain producing areas in China, and the bioavailability and fractionations of As during aging were measured. Results showed that available As in all soils rapidly decreased in the first 30 days and slowly declined thereafter. In spiked soils, As easily became less available and less toxic in low pH soils compared to high pH soils, demonstrating the importance of soil pH on As availability. Results from fitting kinetic equations revealed that the pseudo-second-order model described the As aging processes well in all soils (R 2  = 0.945-0.999, P < 0.01, SE = 0.09-4.25), implying that the mechanism for As aging combined adsorption, external diffusion, and internal diffusion. Fe oxides were more important than Al oxides for determining the As aging rate (|k|). Based on these results, we are the first to propose the approximate aging equilibrium time (T) for As, which was mainly influenced by soil clay content. The shortest time for approximate stabilization of As aging was 28 d in latosol soils (LS), while the longest approximate equilibrium time was 169 d in cinnamon soils (CS). Individual soil properties controlling the variation in different As fractionations further confirmed that the influences of soil types on As aging were the result of the combined effects of soil properties and a time-consuming redistribution process. Copyright © 2017 Elsevier Ltd. All rights reserved.

Dissolved organic carbon fluxes from soils in the Alaskan coastal temperate rainforest

NASA Astrophysics Data System (ADS)

D'Amore, D. V.; Edwards, R.; Hood, E. W.; Herendeen, P. A.; Valentine, D.

2011-12-01

Soil saturation and temperature are the primary factors that influence soil carbon cycling. Interactions between these factors vary by soil type, climate, and landscape position, causing uncertainty in predicting soil carbon flux from. The soils of the North American perhumid coastal temperate rainforest (NCTR) store massive amounts of carbon, yet there is no estimate of dissolved organic carbon (DOC) export from different soil types in the region. There are also no working models that describe the influence of soil saturation and temperature on the export of DOC from soils. To address this key information gap, we measured soil water table elevation, soil temperature, and soil and stream DOC concentrations to calculate DOC flux across a soil hydrologic gradient that included upland soils, forested wetland soils, and sloping bog soils in the NCTR of southeast Alaska. We found that increased soil temperature and frequent fluctuations of soil water tables promoted the export of large quantities of DOC from wetland soils and relatively high amounts of DOC from mineral soils. Average area-weighted DOC flux ranged from 7.7 to 33.0 g C m-2 y-1 across a gradient of hydropedologic soil types. The total area specific export of carbon as DOC for upland, forested wetland and sloping bog catchments was 77, 306, and 329 Kg C ha-1 y-1 respectively. The annual rate of carbon export from wetland soils in this region is among the highest reported in the literature. These findings highlight the importance of terrestrial-aquatic fluxes of DOC as a pathway for carbon loss in the NCTR.

Estimating the Pollution Risk of Cadmium in Soil Using a Composite Soil Environmental Quality Standard

PubMed Central

Huang, Biao; Zhao, Yongcun

2014-01-01

Estimating standard-exceeding probabilities of toxic metals in soil is crucial for environmental evaluation. Because soil pH and land use types have strong effects on the bioavailability of trace metals in soil, they were taken into account by some environmental protection agencies in making composite soil environmental quality standards (SEQSs) that contain multiple metal thresholds under different pH and land use conditions. This study proposed a method for estimating the standard-exceeding probability map of soil cadmium using a composite SEQS. The spatial variability and uncertainty of soil pH and site-specific land use type were incorporated through simulated realizations by sequential Gaussian simulation. A case study was conducted using a sample data set from a 150 km2 area in Wuhan City and the composite SEQS for cadmium, recently set by the State Environmental Protection Administration of China. The method may be useful for evaluating the pollution risks of trace metals in soil with composite SEQSs. PMID:24672364

Thermal properties of degraded lowland peat-moorsh soils

NASA Astrophysics Data System (ADS)

Gnatowski, Tomasz

2016-04-01

Soil thermal properties, i.e.: specific heat capacity (c), thermal conductivity (K), volumetric heat capacity (C) govern the thermal environment and heat transport through the soil. Hence the precise knowledge and accurate predictions of these properties for peaty soils with high amount of organic matter are especially important for the proper forecasting of soil temperature and thus it may lead to a better assessment of the greenhouse gas emissions created by microbiological activity of the peatlands. The objective of the study was to develop the predictive models of the selected thermal parameters of peat-moorsh soils in terms of their potential applicability for forecasting changes of soil temperature in degraded ecosystems of the Middle Biebrza River Valley area. Evaluation of the soil thermal properties was conducted for the parameters: specific heat capacity (c), volumetric heat capacities of the dry and saturated soil (Cdry, Csat) and thermal conductivities of the dry and saturated soil (Kdry, Ksat). The thermal parameters were measured using the dual-needle probe (KD2-Pro) on soil samples collected from seven peaty soils, representing total 24 horizons. The surface layers were characterized by different degrees of advancement of soil degradation dependent on intensiveness of the cultivation practises (peaty and humic moorsh). The underlying soil layers contain peat deposits of different botanical composition (peat-moss, sedge-reed, reed and alder) and varying degrees of decomposition of the organic matter, from H1 to H7 (von Post scale). Based on the research results it has been shown that the specific heat capacity of the soils differs depending on the type of soil (type of moorsh and type of peat). The range of changes varied from 1276 J.kg-1.K-1 in the humic moorsh soil to 1944 J.kg-1.K-1 in the low decomposed sedge-moss peat. It has also been stated that in degraded peat soils with the increasing of the ash content in the soil the value of specific heat has decreased in a non-linear manner. Thermal parameters of the dry mass of the studied soils (Kdry, Cdry) were characterised by the mean value of approximately 0.11±0.028 W.m-1.K-1 and 0.781±0.220 MJ.m-3.K-1. The application of the correlation analysis showed that the most significant predictor of these properties of soils is the soil bulk density which, respectively explains: 54.6% and 67.1% of their variation. The increase of the accuracy in determining Kdry and Cdry was obtained by developing regression models, which apart from the bulk density also include the chemical properties of the peat soils. In the fully saturated soil the Ksat value ranged from 0.47 to 0.63 W.m-1.K-1, and the Csat varied from 3.200 to 3.995 MJ.m-3.K-1. The variation coefficients of these soil thermal features are at the level of approx. 5%. The obtained results allowed to conclude that the significant diversity of studied soils doesn't cause the significant differences in thermal soil parameters in fully saturated soils. The developed statistical relationships indicate that parameters Ksat and Csat were poorly correlated with saturated moisture content.

Insights into soil carbon dynamics across climatic gradients from carbon-pool specific radiocarbon analyses

NASA Astrophysics Data System (ADS)

van der Voort, Tessa Sophia; Hagedorn, Frank; McIntyre, Cameron; Zell, Claudia; Eglinton, Timothy Ian

2017-04-01

Soil carbon constitutes the largest terrestrial reservoir of organic carbon, and therefore understanding the mechanisms and drivers of carbon stabilization is crucial, especially in the framework of climate change. The understanding of the dependence of soil organic turnover in specific carbon pools as related to e.g. climate, soil texture and mineralogy is limited. In this framework, radiocarbon constitutes a uniquely powerful tool that help to unravel carbon dynamics from decadal to millennial timescales. This project combines bulk and pool-specific radiocarbon analyses in the top and deep soil on a wide range of forested soils that span a large climatic gradient (MAT 1.3-9.2°C, MAP 600 to 2100 mm m-2y-1). These well-studies sites are part of the Long-Term Forest Ecosystem Research (LWF) program of the Swiss Federal Institute for Forest, Snow and Landscape research (WSL). This study aims to combine the insights gained from bulk and pool-specific turnover to environmental conditions and molecular composition of soil carbon. The pools investigated span the mineral-associated (occluded and heavy fractions from density fractionation) and potentially water-soluble (free light fractions from density fractionation and water extractable organic carbon) organic carbon fractions. Pool-specific radiocarbon work is augmented by the measurement of abundance of compounds such as alkanes, fatty acids and lignin phenols on a subset of samples. Initial results show disparate patterns depending on soil type and in particular soil texture, which could be indicative of various stabilization mechanisms in different soils. Overall, this study provides new insights into the controls of soil organic matter dynamics as related to environmental conditions, in particular in specific sub-pools of carbon.

Exposure of agricultural crops to nanoparticle CeO2 in biochar-amended soil.

PubMed

Servin, Alia D; De la Torre-Roche, Roberto; Castillo-Michel, Hiram; Pagano, Luca; Hawthorne, Joseph; Musante, Craig; Pignatello, Joseph; Uchimiya, Minori; White, Jason C

2017-01-01

Biochar is seeing increased usage as an amendment in agricultural soils but the significance of nanoscale interactions between this additive and engineered nanoparticles (ENP) remains unknown. Corn, lettuce, soybean and zucchini were grown for 28 d in two different soils (agricultural, residential) amended with 0-2000 mg engineered nanoparticle (ENP) CeO 2  kg -1 and biochar (350 °C or 600 °C) at application rates of 0-5% (w/w). At harvest, plants were analyzed for biomass, Ce content, chlorophyll and lipid peroxidation. Biomass from the four species grown in residential soil varied with species and biochar type. However, biomass in the agricultural soil amended with biochar 600 °C was largely unaffected. Biochar co-exposure had minimal impact on Ce accumulation, with reduced or increased Ce content occurring at the highest (5%) biochar level. Soil-specific and biochar-specific effects on Ce accumulation were observed in the four species. For example, zucchini grown in agricultural soil with 2000 mg CeO 2  kg -1 and 350 °C biochar (0.5-5%) accumulated greater Ce than the control. However, for the 600 °C biochar, the opposite effect was evident, with decreased Ce content as biochar increased. A principal component analysis showed that biochar type accounted for 56-99% of the variance in chlorophyll and lipid peroxidation across the plants. SEM and μ-XRF showed Ce association with specific biochar and soil components, while μ-XANES analysis confirmed that after 28 d in soil, the Ce remained largely as CeO 2 . The current study demonstrates that biochar synthesis conditions significantly impact interactions with ENP, with subsequent effects on particle fate and effects. Copyright © 2016 Elsevier Masson SAS. All rights reserved.

[Effects of tree species diversity on fine-root biomass and morphological characteristics in subtropical Castanopsis carlesii forests].

PubMed

Wang, Wei-Wei; Huang, Jin-Xue; Chen, Feng; Xiong, De-Cheng; Lu, Zheng-Li; Huang, Chao-Chao; Yang, Zhi-Jie; Chen, Guang-Shui

2014-02-01

Fine roots in the Castanopsis carlesii plantation forest (MZ), the secondary forest of C. carlesii through natural regeneration with anthropogenic promotion (AR), and the secondary forest of C. carlesii through natural regeneration (NR) in Sanming City, Fujian Province, were estimated by soil core method to determine the influence of tree species diversity on biomass, vertical distribution and morphological characteristics of fine roots. The results showed that fine root biomass for the 0-80 cm soil layer in the MZ, AR and NR were (182.46 +/- 10.81), (242.73 +/- 17.85) and (353.11 +/- 16.46) g x m(-2), respectively, showing an increased tendency with increasing tree species diversity. In the three forests, fine root biomass was significantly influenced by soil depth, and fine roots at the 0-10 cm soil layer accounted for more than 35% of the total fine root biomass. However, the interaction of stand type and soil depth on fine-root distribution was not significant, indicating no influence of tree species diversity on spatial niche segregation in fine roots. Root surface area density and root length density were the highest in NR and lowest in the MZ. Specific root length was in the order of AR > MZ > NR, while specific root surface area was in the order of NR > MZ > AR. There was no significant interaction of stand type and soil depth on specific root length and specific root surface area. Fine root morphological plasticity at the stand level had no significant response to tree species diversity.

Specific features of the development of soils of hydromorphic ecosystems in the northern taiga of Western Siberia under conditions of cryogenesis

NASA Astrophysics Data System (ADS)

Matyshak, G. V.; Bogatyrev, L. G.; Goncharova, O. Yu.; Bobrik, A. A.

2017-10-01

Differently directed and heterochronous cryogenic processes have contributed to the contrasting soil cover patterns and spatial heterogeneity of the properties of soils in hydromorphic ecosystems of the discontinuous permafrost zone of the northern taiga in Western Siberia. Frost heave and permafrost thawing within ecosystems of highmoor bogs have led to the development of specific cryogenic landforms, such as flat-topped and large peat mounds. A set of cryogenic soils is developed in these ecosystems; it includes different variants of cryozems, gleyzems (Cryosols), and peat soils (Histosols). The distribution of these soil types is controlled by the local topography and thawing depth, other factors being insignificant. Alternation of peat horizons of different types and ages, whirl-like patterns of horizon boundaries, considerable variations in the thickness of soil horizons, and inversions of soil horizons under the impact of frost cracking, frost heave, and cryoturbation are typical of the considered soils. Thawing depth is the most significant factor affecting the thickness of organic horizons, the soil pH, and the degree of decomposition of peat. As a result of the upward movement of bog ecosystems under the impact of frost heave, peat soils are subjected to considerable transformation: peat horizons undergo mineralization, and the thickness of organic horizons decreases; in some cases, eluvial-illuvial differentiation of the mineral horizons takes place, and peat podzols are developed. However, the opposite process of the return of the soils to the bog stage of pedogenesis with peat accumulation may take place in any time in the case of activation of thermokarst processes.

Multivariate soil fertility relationships for predicting the environmental persistence of 2,4,6-trinitrotoluene (TNT) and 1,3,5-trinitro-1,3,5-tricyclohexane (RDX) among taxonomically distinct soils.

PubMed

Katseanes, Chelsea K; Chappell, Mark A; Hopkins, Bryan G; Durham, Brian D; Price, Cynthia L; Porter, Beth E; Miller, Lesley F

2017-12-01

After nearly a century of use in numerous munition platforms, TNT and RDX contamination has turned up largely in the environment due to ammunition manufacturing or as part of releases from low-order detonations during training activities. Although the basic knowledge governing the environmental fate of TNT and RDX are known, accurate predictions of TNT and RDX persistence in soil remain elusive, particularly given the universal heterogeneity of pedomorphic soil types. In this work, we proposed overcoming this problem by considering the environmental persistence of these munition constituents (MC) as multivariate mathematical functions over a variety of taxonomically distinct soil types, instead of a single constant or parameter of a specific absolute value. To test this idea, we conducted experiments where the disappearance kinetics of TNT and RDX were measured over a >300 h period in taxonomically distinct soils. Classical fertility-based soil measurements were log-transformed, statistically decomposed, and correlated to TNT and RDX disappearance rates (k -TNT and k -RDX ) using multivariate dimension-reduction and correlation techniques. From these efforts, we generated multivariate linear functions for k parameters across different soil types based on a statistically reduced set of their chemical and physical properties: Calculations showed that the soil properties exhibited strong covariance, with a prominent latent structure emerging as the basis for relative comparisons of the samples in reduced space. Loadings describing TNT degradation were largely driven by properties associated with alkaline/calcareous soil characteristics, while the degradation of RDX was attributed to the soil organic matter content - reflective of an important soil fertility characteristic. In spite of the differing responses to the munitions, batch data suggested that the overall nutrient dynamics were consistent for each soil type, as well as readily distinguishable from the other soil types used in this study. Thus, we hypothesized that the latent structure arising from the strong covariance of full multivariate geochemical matrix describing taxonomically distinguished "soil types" may provide the means for potentially predicting complex phenomena in soils. Published by Elsevier Ltd.

Chemical-biogeographic survey of secondary metabolism in soil.

PubMed

Charlop-Powers, Zachary; Owen, Jeremy G; Reddy, Boojala Vijay B; Ternei, Melinda A; Brady, Sean F

2014-03-11

In this study, we compare biosynthetic gene richness and diversity of 96 soil microbiomes from diverse environments found throughout the southwestern and northeastern regions of the United States. The 454-pyroseqencing of nonribosomal peptide adenylation (AD) and polyketide ketosynthase (KS) domain fragments amplified from these microbiomes provide a means to evaluate the variation of secondary metabolite biosynthetic diversity in different soil environments. Through soil composition and AD- and KS-amplicon richness analysis, we identify soil types with elevated biosynthetic potential. In general, arid soils show the richest observed biosynthetic diversity, whereas brackish sediments and pine forest soils show the least. By mapping individual environmental amplicon sequences to sequences derived from functionally characterized biosynthetic gene clusters, we identified conserved soil type-specific secondary metabolome enrichment patterns despite significant sample-to-sample sequence variation. These data are used to create chemical biogeographic distribution maps for biomedically valuable families of natural products in the environment that should prove useful for directing the discovery of bioactive natural products in the future.

Moderately haloalkaliphilic actinomycetes in salt-affected soils

NASA Astrophysics Data System (ADS)

Zvyagintsev, D. G.; Zenova, G. M.; Oborotov, G. V.

2009-12-01

It was found that the population density of actinomycetes in solonchaks and saline desert soils varied from hundreds to tens of thousands of colony-forming units (CFUs) per 1 g of soil depending on soil type and was by 1-3 orders of magnitude lower than the number of mycelial bacteria in main soil types. Actinomycetes grow actively in saline soils, and the length of their mycelium reaches 140 m per 1 g of soil. Domination of moderately halophilic, alkaliphilic, and haloalkaliphilic actinomycetes, which grow well under 5% NaCl and pH 8-9, is a specific feature of actinomycetal complexes in saline soils. Representatives of Streptomyces and Micromonospora genera were found among the haloalkaliphilic actinomycetes. Micromonospores demonstrated lower (than streptomycetes) adaptability to high salt concentrations. Investigation of the phylogenetic position of isolated dominant haloalkaliphilic strains of streptomycetes performed on the basis of sequencing of the gene 16S rRNA enabled identifying these strains as Streptomyces pluricolorescens and S. prunicolor.

Assessing and monitoring soil quality at agricultural waste disposal areas-Soil Indicators

NASA Astrophysics Data System (ADS)

Doula, Maria; Kavvadias, Victor; Sarris, Apostolos; Lolos, Polykarpos; Liakopoulou, Nektaria; Hliaoutakis, Aggelos; Kydonakis, Aris

2014-05-01

The necessity of elaborating indicators is one of the priorities identified by the United Nations Convention to Combat Desertification (UNCCD). The establishment of an indicator monitoring system for environmental purposes is dependent on the geographical scale. Some indicators such as rain seasonality or drainage density are useful over large areas, but others such as soil depth, vegetation cover type, and land ownership are only applicable locally. In order to practically enhance the sustainability of land management, research on using indicators for assessing land degradation risk must initially focus at local level because management decisions by individual land users are taken at this level. Soils that accept wastes disposal, apart from progressive degradation, may cause serious problems to the surrounding environment (humans, animals, plants, water systems, etc.), and thus, soil quality should be necessarily monitored. Therefore, quality indicators, representative of the specific waste type, should be established and monitored periodically. Since waste composition is dependent on their origin, specific indicators for each waste type should be established. Considering agricultural wastes, such a specification, however, could be difficult, since almost all agricultural wastes are characterized by increased concentrations of the same elements, namely, phosphorous, nitrogen, potassium, sulfur, etc.; contain large amounts of organic matter; and have very high values of chemical oxygen demand (COD), biochemical oxygen demand (BOD), and electrical conductivity. Two LIFE projects, namely AgroStrat and PROSODOL are focused on the identification of soil indicators for the assessment of soil quality at areas where pistachio wastes and olive mill wastes are disposed, respectively. Many soil samples were collected periodically for 2 years during PROSODOL and one year during AgroStrat (this project is in progress) from waste disposal areas and analyzed for 23 parameters. Results indicate that there are soil parameters that can be used as indictors to assess soil quality at such areas. For the two cases, i.e pistachio wastes and olive oil mill wastes, different soil parameters were identified as potential indicators. In specific, for OMW the proposed indicators are: organic matter, electrical conductivity, total N, total polyphenols, exchangeable K, DTPA-available Fe, available P and pH (for the cases of acid soils). For pistachio wastes, it seems that the most appropriate indictors are: organic matter, electrical conductivity, exchangeable Mg, DTPA-available Fe, DTPA-available Cu, available B. A monitoring system was developed which may assist authorities and policy makers to continuously monitor the disposal areas or areas where wastes are used for fertilization/irrigation. For this, soil parameters were mapped with respect to the depth, date and temporal variations of their spatial distribution (spatial surfaces). Interpolated surfaces based on the Inverse Distance Weighted method (IDW) were created and integrated within a geospatial web based map application tool.

Selected soil enzyme activities in an oak-hickory forest following long-term prescribed burning

Treesearch

M. R. Bayan; F. Eivazi

1993-01-01

The biochemical reactions within the soil are mediated by soil flora and fauna, and are catalyzed by enzymes. Therefore, enzymes play a significant role in nutrient cycling. Enzymes are specific for the type of chemical reactions in which they participate. Arylsulfatase is the enzyme that catalyzes the hydrolysis of an arylsulfate anion by fission of the oxygen-sulfur...

Cropping practices manipulate abundance patterns of root and soil microbiome members paving the way to smart farming.

PubMed

Hartman, Kyle; van der Heijden, Marcel G A; Wittwer, Raphaël A; Banerjee, Samiran; Walser, Jean-Claude; Schlaeppi, Klaus

2018-01-16

Harnessing beneficial microbes presents a promising strategy to optimize plant growth and agricultural sustainability. Little is known to which extent and how specifically soil and plant microbiomes can be manipulated through different cropping practices. Here, we investigated soil and wheat root microbial communities in a cropping system experiment consisting of conventional and organic managements, both with different tillage intensities. While microbial richness was marginally affected, we found pronounced cropping effects on community composition, which were specific for the respective microbiomes. Soil bacterial communities were primarily structured by tillage, whereas soil fungal communities responded mainly to management type with additional effects by tillage. In roots, management type was also the driving factor for bacteria but not for fungi, which were generally determined by changes in tillage intensity. To quantify an "effect size" for microbiota manipulation, we found that about 10% of variation in microbial communities was explained by the tested cropping practices. Cropping sensitive microbes were taxonomically diverse, and they responded in guilds of taxa to the specific practices. These microbes also included frequent community members or members co-occurring with many other microbes in the community, suggesting that cropping practices may allow manipulation of influential community members. Understanding the abundance patterns of cropping sensitive microbes presents the basis towards developing microbiota management strategies for smart farming. For future targeted microbiota management-e.g., to foster certain microbes with specific agricultural practices-a next step will be to identify the functional traits of the cropping sensitive microbes.

Mutualism and Adaptive Divergence: Co-Invasion of a Heterogeneous Grassland by an Exotic Legume-Rhizobium Symbiosis

PubMed Central

Porter, Stephanie S.; Stanton, Maureen L.; Rice, Kevin J.

2011-01-01

Species interactions play a critical role in biological invasions. For example, exotic plant and microbe mutualists can facilitate each other's spread as they co-invade novel ranges. Environmental context may influence the effect of mutualisms on invasions in heterogeneous environments, however these effects are poorly understood. We examined the mutualism between the legume, Medicago polymorpha, and the rhizobium, Ensifer medicae, which have both invaded California grasslands. Many of these invaded grasslands are composed of a patchwork of harsh serpentine and relatively benign non-serpentine soils. We grew legume genotypes collected from serpentine or non-serpentine soil in both types of soil in combination with rhizobium genotypes from serpentine or non-serpentine soils and in the absence of rhizobia. Legumes invested more strongly in the mutualism in the home soil type and trends in fitness suggested that this ecotypic divergence was adaptive. Serpentine legumes had greater allocation to symbiotic root nodules in serpentine soil than did non-serpentine legumes and non-serpentine legumes had greater allocation to nodules in non-serpentine soil than did serpentine legumes. Therefore, this invasive legume has undergone the rapid evolution of divergence for soil-specific investment in the mutualism. Contrary to theoretical expectations, the mutualism was less beneficial for legumes grown on the stressful serpentine soil than on the non-serpentine soil, possibly due to the inhibitory effects of serpentine on the benefits derived from the interaction. The soil-specific ability to allocate to a robust microbial mutualism may be a critical, and previously overlooked, adaptation for plants adapting to heterogeneous environments during invasion. PMID:22174755

Effect of water potential and void ratio on erodibility for agricultural soils

USDA-ARS?s Scientific Manuscript database

Soil erodibility has confounded researchers for decades. Difficulties arise with initiation of motion, pore-water status, physical, and perhaps biological, material properties and type of applied energy (i.e. rainfall, runoff, freeze/thaw, wind). Though specific tests have been developed to determin...

Soil CO2 efflux and water use efficiency across diverse cover types in southern Appalachian hardwood forests

Treesearch

Ruba C. Bilal; John R. Seiler; Brian D. Strahm; John A. Peterson

2016-01-01

We are investigating biogeochemical cycling in a mixed hardwood forest in the Ridge and Valley physiographic province in Montgomery County, Virginia. The broad aim of the study is to understand how carbon, water and nutrient cycles vary among diverse stand types in a relatively small spatial area. The specific objectives here are to determine patterns in soil CO2...

Defining the core Arabidopsis thaliana root microbiome

PubMed Central

Gehring, Jase; Malfatti, Stephanie; Tremblay, Julien; Engelbrektson, Anna; Kunin, Victor; del Rio, Tijana Glavina; Edgar, Robert C.; Eickhorst, Thilo; Ley, Ruth E.; Hugenholtz, Philip; Tringe, Susannah Green; Dangl, Jeffery L.

2014-01-01

Land plants associate with a root microbiota distinct from the complex microbial community present in surrounding soil. The microbiota colonizing therhizosphere(immediately surroundingthe root) and the endophytic compartment (within the root) contribute to plant growth, productivity, carbon sequestration and phytoremediation1-3. Colonization of the root occurs despite a sophisticated plant immune system4,5, suggesting finely tuned discrimination of mutualists and commensals from pathogens. Genetic principles governing the derivation of host-specific endophyte communities from soil communities are poorly understood. Here we report the pyrosequencing of the bacterial 16S ribosomal RNA gene of more than 600 Arabidopsis thaliana plants to test the hypotheses that the root rhizosphere and endophytic compartment microbiota of plants grown under controlled conditions in natural soils are sufficiently dependent on the host to remain consistent across different soil types and developmental stages, and sufficiently dependent on host genotype to vary between inbred Arabidopsis accessions. We describe different bacterial communities in two geochemically distinct bulk soils and in rhizosphere and endophytic compartments prepared from roots grown in these soils. The communities in each compartment are strongly influenced by soil type. Endophytic compartments from both soils feature overlapping, low-complexity communities that are markedly enriched in Actinobacteria and specific families from other phyla, notably Proteobacteria. Some bacteria vary quantitatively between plants of different developmental stage and genotype. Our rigorous definition of an endophytic compartment microbiome should facilitate controlled dissection of plantmicrobe interactions derived from complex soil communities. PMID:22859206

Functional traits of soil invertebrates as indicators for exposure to soil disturbance.

PubMed

Hedde, Mickaël; van Oort, Folkert; Lamy, Isabelle

2012-05-01

We tested a trait-based approach to link a soil disturbance to changes in invertebrate communities. Soils and macro-invertebrates were sampled in sandy soils contaminated by long-term wastewater irrigation, adding notably organic matter and trace metals (TM). We hypothesized that functional traits of invertebrates depict ways of exposure and that exposure routes relate to specific TM pools. Geophages and soft-body invertebrates were chosen to inform on exposure by ingestion or contact, respectively. Trait-based indices depicted more accurately effects of pollution than community density and diversity did. Exposure by ingestion had more deleterious effects than by contact. Both types of exposed invertebrates were influenced by TM, but geophages mainly responded to changes in soil organic matter contents. The trait-based approach requires to be applied in various conditions to uncorrelate specific TM impacts from those of other environmental factors. Copyright © 2012 Elsevier Ltd. All rights reserved.

Multivariate functions for predicting the sorption of 2,4,6-trinitrotoluene (TNT) and 1,3,5-trinitro-1,3,5-tricyclohexane (RDX) among taxonomically distinct soils.

PubMed

Katseanes, Chelsea K; Chappell, Mark A; Hopkins, Bryan G; Durham, Brian D; Price, Cynthia L; Porter, Beth E; Miller, Lesley F

2016-11-01

After nearly a century of use in numerous munition platforms, TNT and RDX contamination has turned up largely in the environment due to ammunition manufacturing or as part of releases from low-order detonations during training activities. Although the basic knowledge governing the environmental fate of TNT and RDX are known, accurate predictions of TNT and RDX persistence in soil remain elusive, particularly given the universal heterogeneity of pedomorphic soil types. In this work, we proposed a new solution for modeling the sorption and persistence of these munition constituents as multivariate mathematical functions correlating soil attribute data over a variety of taxonomically distinct soil types to contaminant behavior, instead of a single constant or parameter of a specific absolute value. To test this idea, we conducted experiments measuring the sorption of TNT and RDX on taxonomically different soil types that were extensively physical and chemically characterized. Statistical decomposition of the log-transformed, and auto-scaled soil characterization data using the dimension-reduction technique PCA (principal component analysis) revealed a strong latent structure based in the multiple pairwise correlations among the soil properties. TNT and RDX sorption partitioning coefficients (KD-TNT and KD-RDX) were regressed against this latent structure using partial least squares regression (PLSR), generating a 3-factor, multivariate linear functions. Here, PLSR models predicted KD-TNT and KD-RDX values based on attributes contributing to endogenous alkaline/calcareous and soil fertility criteria, respectively, exhibited among the different soil types: We hypothesized that the latent structure arising from the strong covariance of full multivariate geochemical matrix describing taxonomically distinguished soil types may provide the means for potentially predicting complex phenomena in soils. The development of predictive multivariate models tuned to a local soil's taxonomic designation would have direct benefit to military range managers seeking to anticipate the environmental risks of training activities on impact sites. Published by Elsevier Ltd.

Effects of Plutonium on Soil Microorganisms

PubMed Central

Wildung, Raymond E.; Garland, Thomas R.

1982-01-01

As a first phase in an investigation of the role of the soil microflora in Pu complex formation and solubilization in soil, the effects of Pu concentration, form, and specific activity on microbial types, colony-forming units, and CO2 evolution rate were determined in soils amended with C and N sources to optimize microbial activity. The effects of Pu differed with organism type and incubation time. After 30 days of incubation, aerobic sporeforming and anaerobic bacteria were significantly affected by soil Pu levels as low as 1 μg/g when Pu was added as the hydrolyzable 239Pu(NO3)4 (solubility, <0.1% in soil). Other classes of organisms, except the fungi, were significantly affected at soil Pu levels of 10 μg/g. Fungi were affected only at soil Pu levels of 180 μg/g. Soil CO2 evolution rate and total accumulated CO2 were affected by Pu only at the 180 μg/g level. Because of the possible role of resistant organisms in complex formation, the mechanisms of effects of Pu on the soil fungi were further evaluated. The effect of Pu on soil fungal colony-forming units was a function of Pu solubility in soil and Pu specific activity. When Pu was added in a soluble, complexed form [238Pu2(diethylenetriaminepentaacetate)3], effects occurred at Pu levels of 1 μg/g and persisted for at least 95 days. Toxicity was due primarily to radiation effects rather than to chemical effects, suggesting that, at least in the case of the fungi, formation of Pu complexes would result primarily from ligands associated with normal (in contrast to chemically-induced) biochemical pathways. PMID:16345947

Seeing the soil through the net: an eye-opener on the soil map of the Flemish region (Belgium)

NASA Astrophysics Data System (ADS)

Dondeyne, Stefaan; Vanierschot, Laura; Langohr, Roger; Van Ranst, Eric; Deckers, Jozef; Oorts, Katrien

2017-04-01

A systematic soil survey of Belgium was conducted from 1948 to 1991. Field surveys were done at the detailed scale of 1:5000 with the final maps published at a 1:20,000 scale. The legend of these detailed soil maps (scale 1:20,000) has been converted to the 3rd edition of the international soil classification system 'World Reference Base for Soil Resources' (WRB). Over the last years, the government of the Flemish region made great efforts to make these maps, along with other environmental data, available to the general audience through the internet. The soil maps are widely used and consulted by researchers, teachers, land-use planners, environmental consultancy agencies and archaeologists. The maps can be downloaded and consulted in the viewer 'Visual Soil Explorer' ('Bodemverkenner'). To increase the legibility of the maps, we assembled a collection of photographs from soil profiles representing 923 soil types and 413 photos of related landscape settings. By clicking on a specific location in the 'Visual Soil Explorer', pictures of the corresponding soil type and landscape appear in a pop-up window, with a brief explanation about the soil properties. The collection of photographs of soil profiles cover almost 80% of the total area of the Flemish region, and include the 100 most common soil types. Our own teaching experience shows that these information layers are particular valuable for teaching soil geography and earth sciences in general. Overall, such visual information layers should contribute to a better interpretation of the soil maps and legacy soil data by serving as an eye-opener on the soil map to the wider community.

Interaction of soil pH and phosphorus efficacy: Long-term effects of P fertilizer and lime applications on wheat, barley, and sugar beet.

PubMed

von Tucher, Sabine; Hörndl, Dorothea; Schmidhalter, Urs

2018-01-01

Phosphorus (P), a plant macronutrient, must be adequately supplied for crop growth. In Germany, many soils are high in plant-available P; specifically in arable farming, P fertilizer application has been reduced or even omitted in the last decade. Therefore, it is important to understand how long these soils can support sustainable crop production, and what concentrations of soil P are required for it. We analyzed a 36-year long-term field experiment regarding the effects of different P application and liming rates on plant growth and soil P concentrations with a crop rotation of sugar beet, wheat, and barley. Sugar beet reacted to low soil P and low soil pH levels more sensitively than wheat, which was not significantly affected by the long-term omitted P application. All three crop species showed adequate growth at soil P levels lower than the currently recommended levels, if low soil pH was optimized by liming. The increase in efficacy of soil and fertilizer P by reduced P application rates therefore requires the adaptation of the soil pH to a soil type-specific optimal level.

Effect of steam activated biochar application to industrially contaminated soils on bioavailability of polycyclic aromatic hydrocarbons and ecotoxicity of soils.

PubMed

Kołtowski, Michał; Hilber, Isabel; Bucheli, Thomas D; Oleszczuk, Patryk

2016-10-01

The aim of this study was to determine the effect of steam activation of biochars on the immobilization of freely dissolved (Cfree) and bioaccessible fraction (Cbioacc) of PAHs in soils. Additionally, the toxicity to various organisms like Vibrio fischeri, Lepidium sativum and Folsomia candida was measured before and after the amendment of biochars to soils. Three biochars produced from willow, coconut and wheat straw were steam activated and added to three different soils with varying content and origin of PAHs (coke vs. bitumen). The soils with the addition of the biochars (activated and non-activated) were incubated for a period of 60days. Steam activation of the biochars resulted in more pronounced reduction of both Cfree and Cbioacc. The range of the increase in effectiveness was from 10 to 84% for Cfree and from 50 to 99% for Cbioacc. In contrast, the effect of activation on the toxicity of the soils studied varied greatly and was specific to a particular test and soil type. Essentially, biochar activation did not result in a change of phytotoxicity, but it increased or decreased (depending on the parameter, type of biochar, contaminant source, and soil and soil type) the toxic effect to F. candida, and decreased the toxicity of leachates to V. fischeri. Copyright © 2016 Elsevier B.V. All rights reserved.

Spatial variability of specific surface area of arable soils in Poland

NASA Astrophysics Data System (ADS)

Sokolowski, S.; Sokolowska, Z.; Usowicz, B.

2012-04-01

Evaluation of soil spatial variability is an important issue in agrophysics and in environmental research. Knowledge of spatial variability of physico-chemical properties enables a better understanding of several processes that take place in soils. In particular, it is well known that mineralogical, organic, as well as particle-size compositions of soils vary in a wide range. Specific surface area of soils is one of the most significant characteristics of soils. It can be not only related to the type of soil, mainly to the content of clay, but also largely determines several physical and chemical properties of soils and is often used as a controlling factor in numerous biological processes. Knowledge of the specific surface area is necessary in calculating certain basic soil characteristics, such as the dielectric permeability of soil, water retention curve, water transport in the soil, cation exchange capacity and pesticide adsorption. The aim of the present study is two-fold. First, we carry out recognition of soil total specific surface area patterns in the territory of Poland and perform the investigation of features of its spatial variability. Next, semivariograms and fractal analysis are used to characterize and compare the spatial variability of soil specific surface area in two soil horizons (A and B). Specific surface area of about 1000 samples was determined by analyzing water vapor adsorption isotherms via the BET method. The collected data of the values of specific surface area of mineral soil representatives for the territory of Poland were then used to describe its spatial variability by employing geostatistical techniques and fractal theory. Using the data calculated for some selected points within the entire territory and along selected directions, the values of semivariance were determined. The slope of the regression line of the log-log plot of semi-variance versus the distance was used to estimate the fractal dimension, D. Specific surface area in A and B horizons was space-dependent, with the range of spatial dependence of about 2.5°. Variogram surfaces showed anisotropy of the specific surface area in both horizons with a trend toward the W to E directions. The smallest fractal dimensions were obtained for W to E directions and the highest values - for S to N directions. * The work was financially supported in part by the ESA Programme for European Cooperating States (PECS), No.98084 "SWEX-R, Soil Water and Energy Exchange/Research", AO3275.

Estimating soil erosion in Natura 2000 areas located on three semi-arid Mediterranean Islands.

PubMed

Zaimes, George N; Emmanouloudis, Dimitris; Iakovoglou, Valasia

2012-03-01

A major initiative in Europe is the protection of its biodiversity. To accomplish this, specific areas from all countries of the European Union are protected by the establishment of the "Natura 2000" network. One of the major threats to these areas and in general to ecosystems is soil erosion. The objective of this study was to quantitatively estimate surface soil losses for three of these protected areas that are located on semi-arid islands of the Mediterranean. One Natura 2000 area was selected from each of the following islands: Sicily in Italy, Cyprus and Rhodes in Greece. To estimate soil losses, Gerlach troughs were used. These troughs were established on slopes that ranged from 35-40% in four different vegetation types: i) Quercus ilex and Quercus rotundifolia forests, ii) Pinus brutia forests, iii) "Phrygana" shrublands and iv) vineyards. The shrublands had the highest soil losses (270 kg ha(-1) yr(-1)) that were 5-13 times more than the other three vegetation types. Soil losses in these shrublands should be considered a major concern. However, the other vegetation types also had high soil losses (21-50 kg ha(-1) yr(-1)). Conclusively, in order to enhance and conserve the biodiversity of these Natura 2000 areas protective management measures should be taken into consideration to decrease soil losses.

An Evaluation of Total Solar Reflectance and Spectral Band Ratioing Techniques for Estimating Soil Water Content

NASA Technical Reports Server (NTRS)

Reginato, R. J.; Vedder, J. F.; Idso, S. B.; Jackson, R. D.; Blanchard, M. B.; Goettelman, R.

1977-01-01

For several days in March of 1975, reflected solar radiation measurements were obtained from smooth and rough surfaces of wet, drying, and continually dry Avondale loam at Phoenix, Arizona, with pyranometers located 50 cm above the ground surface and a multispectral scanner flown at a 300-m height. The simple summation of the different band radiances measured by the multispectral scanner proved equally as good as the pyranometer data for estimating surface soil water content if the multispectral scanner data were standardized with respect to the intensity of incoming solar radiation or the reflected radiance from a reference surface, such as the continually dry soil. Without this means of standardization, multispectral scanner data are most useful in a spectral band ratioing context. Our results indicated that, for the bands used, no significant information on soil water content could be obtained by band ratioing. Thus the variability in soil water content should insignificantly affect soil-type discrimination based on identification of type-specific spectral signatures. Therefore remote sensing, conducted in the 0.4- to 1.0-micron wavelength region of the solar spectrum, would seem to be much More suited to identifying crop and soil types than to estimating of soil water content.

Mineral Types and Tree Species Determine the Functional and Taxonomic Structures of Forest Soil Bacterial Communities.

PubMed

Colin, Y; Nicolitch, O; Turpault, M-P; Uroz, S

2017-03-01

Although minerals represent important soil constituents, their impact on the diversity and structure of soil microbial communities remains poorly documented. In this study, pure mineral particles with various chemistries (i.e., obsidian, apatite, and calcite) were considered. Each mineral type was conditioned in mesh bags and incubated in soil below different tree stands (beech, coppice with standards, and Corsican pine) for 2.5 years to determine the relative impacts of mineralogy and mineral weatherability on the taxonomic and functional diversities of mineral-associated bacterial communities. After this incubation period, the minerals and the surrounding bulk soil were collected to determine mass loss and to perform soil analyses, enzymatic assays, and cultivation-dependent and -independent analyses. Notably, our 16S rRNA gene pyrosequencing analyses revealed that after the 2.5-year incubation period, the mineral-associated bacterial communities strongly differed from those of the surrounding bulk soil for all tree stands considered. When focusing only on minerals, our analyses showed that the bacterial communities associated with calcite, the less recalcitrant mineral type, significantly differed from those that colonized obsidian and apatite minerals. The cultivation-dependent analysis revealed significantly higher abundances of effective mineral-weathering bacteria on the most recalcitrant minerals (i.e., apatite and obsidian). Together, our data showed an enrichment of Betaproteobacteria and effective mineral-weathering bacteria related to the Burkholderia and Collimonas genera on the minerals, suggesting a key role for these taxa in mineral weathering and nutrient cycling in nutrient-poor forest ecosystems. IMPORTANCE Forests are usually developed on nutrient-poor and rocky soils, while nutrient-rich soils have been dedicated to agriculture. In this context, nutrient recycling and nutrient access are key processes in such environments. Deciphering how soil mineralogy influences the diversity, structure, and function of soil bacterial communities in relation to the soil conditions is crucial to better understanding the relative role of the soil bacterial communities in nutrient cycling and plant nutrition in nutrient-poor environments. The present study determined in detail the diversity and structure of bacterial communities associated with different mineral types incubated for 2.5 years in the soil under different tree species using cultivation-dependent and -independent analyses. Our data showed an enrichment of specific bacterial taxa on the minerals, specifically on the most weathered minerals, suggesting that they play key roles in mineral weathering and nutrient cycling in nutrient-poor forest ecosystems. Copyright © 2017 American Society for Microbiology.

Mineral Types and Tree Species Determine the Functional and Taxonomic Structures of Forest Soil Bacterial Communities

PubMed Central

Colin, Y.; Nicolitch, O.; Turpault, M.-P.

2016-01-01

ABSTRACT Although minerals represent important soil constituents, their impact on the diversity and structure of soil microbial communities remains poorly documented. In this study, pure mineral particles with various chemistries (i.e., obsidian, apatite, and calcite) were considered. Each mineral type was conditioned in mesh bags and incubated in soil below different tree stands (beech, coppice with standards, and Corsican pine) for 2.5 years to determine the relative impacts of mineralogy and mineral weatherability on the taxonomic and functional diversities of mineral-associated bacterial communities. After this incubation period, the minerals and the surrounding bulk soil were collected to determine mass loss and to perform soil analyses, enzymatic assays, and cultivation-dependent and -independent analyses. Notably, our 16S rRNA gene pyrosequencing analyses revealed that after the 2.5-year incubation period, the mineral-associated bacterial communities strongly differed from those of the surrounding bulk soil for all tree stands considered. When focusing only on minerals, our analyses showed that the bacterial communities associated with calcite, the less recalcitrant mineral type, significantly differed from those that colonized obsidian and apatite minerals. The cultivation-dependent analysis revealed significantly higher abundances of effective mineral-weathering bacteria on the most recalcitrant minerals (i.e., apatite and obsidian). Together, our data showed an enrichment of Betaproteobacteria and effective mineral-weathering bacteria related to the Burkholderia and Collimonas genera on the minerals, suggesting a key role for these taxa in mineral weathering and nutrient cycling in nutrient-poor forest ecosystems. IMPORTANCE Forests are usually developed on nutrient-poor and rocky soils, while nutrient-rich soils have been dedicated to agriculture. In this context, nutrient recycling and nutrient access are key processes in such environments. Deciphering how soil mineralogy influences the diversity, structure, and function of soil bacterial communities in relation to the soil conditions is crucial to better understanding the relative role of the soil bacterial communities in nutrient cycling and plant nutrition in nutrient-poor environments. The present study determined in detail the diversity and structure of bacterial communities associated with different mineral types incubated for 2.5 years in the soil under different tree species using cultivation-dependent and -independent analyses. Our data showed an enrichment of specific bacterial taxa on the minerals, specifically on the most weathered minerals, suggesting that they play key roles in mineral weathering and nutrient cycling in nutrient-poor forest ecosystems. PMID:28003192

A single-degree-of-freedom model for non-linear soil amplification

USGS Publications Warehouse

Erdik, Mustafa Ozder

1979-01-01

For proper understanding of soil behavior during earthquakes and assessment of a realistic surface motion, studies of the large-strain dynamic response of non-linear hysteretic soil systems are indispensable. Most of the presently available studies are based on the assumption that the response of a soil deposit is mainly due to the upward propagation of horizontally polarized shear waves from the underlying bedrock. Equivalent-linear procedures, currently in common use in non-linear soil response analysis, provide a simple approach and have been favorably compared with the actual recorded motions in some particular cases. Strain compatibility in these equivalent-linear approaches is maintained by selecting values of shear moduli and damping ratios in accordance with the average soil strains, in an iterative manner. Truly non-linear constitutive models with complete strain compatibility have also been employed. The equivalent-linear approaches often raise some doubt as to the reliability of their results concerning the system response in high frequency regions. In these frequency regions the equivalent-linear methods may underestimate the surface motion by as much as a factor of two or more. Although studies are complete in their methods of analysis, they inevitably provide applications pertaining only to a few specific soil systems, and do not lead to general conclusions about soil behavior. This report attempts to provide a general picture of the soil response through the use of a single-degree-of-freedom non-linear-hysteretic model. Although the investigation is based on a specific type of nonlinearity and a set of dynamic soil properties, the method described does not limit itself to these assumptions and is equally applicable to other types of nonlinearity and soil parameters.

Soil functional types: surveying the biophysical dimensions of soil security

NASA Astrophysics Data System (ADS)

Cécillon, Lauric; Barré, Pierre

2015-04-01

Soil is a natural capital that can deliver key ecosystem services (ES) to humans through the realization of a series of soil processes controlling ecosystem functioning. Soil is also a diverse and endangered natural resource. A huge pedodiversity has been described at all scales, which is strongly altered by global change. The multidimensional concept soil security, encompassing biophysical, economic, social, policy and legal frameworks of soils has recently been proposed, recognizing the role of soils in global environmental sustainability challenges. The biophysical dimensions of soil security focus on the functionality of a given soil that can be viewed as the combination of its capability and its condition [1]. Indeed, all soils are not equal in term of functionality. They show different processes, provide different ES to humans and respond specifically to global change. Knowledge of soil functionality in space and time is thus a crucial step towards the achievement soil security. All soil classification systems incorporate some functional information, but soil taxonomy alone cannot fully describe the functioning, limitations, resistance and resilience of soils. Droogers and Bouma [2] introduced functional variants (phenoforms) for each soil type (genoform) so as to fit more closely to soil functionality. However, different genoforms can have the same functionality. As stated by McBratney and colleagues [1], there is a great need of an agreed methodology for defining the reference state of soil functionality. Here, we propose soil functional types (SFT) as a relevant classification system for the biophysical dimensions of soil security. Following the definition of plant functional types widely used in ecology, we define a soil functional type as "a set of soil taxons or phenoforms sharing similar processes (e.g. soil respiration), similar effects on ecosystem functioning (e.g. primary productivity) and similar responses to global change (land-use, management or climate) for a particular soil-provided ecosystem service (e.g. climate regulation)". One SFT can thus include several soil types having the same functionality for a particular soil-provided ES. Another consequence is that SFT maps for two different ES may not superimpose over the same area, since some soils may fall in the same SFT for a service and in different SFT for another one. Soil functional types could be assessed and monitored in space and time by a combination of soil functional traits that correspond to inherent and manageable properties of soils. Their metrology would involve either classic (pedological observations) or advanced (molecular ecology, spectrometry, geophysics) tools. SFT could be studied and mapped at all scales, depending on the purpose of the soil security assessment (e.g. global climate modeling, land planning and management, biodiversity conservation). Overall, research is needed to find a pathway from soil pedological maps to SFT maps which would yield important benefits towards the assessment and monitoring of soil security. Indeed, this methodology would allow (i) reducing the spatial uncertainty on the assessment of ES; (ii) identifying and mapping multifunctional soils, which may be the most important soil resource to preserve. References [1] McBratney et al., 2014. Geoderma 213:203-213. [2] Droogers P, Bouma J, 1997. SSSAJ 61:1704-1710.

Lowering temperature to increase chemical oxidation efficiency: the effect of temperature on permanganate oxidation rates of five types of well defined organic matter, two natural soils, and three pure phase products.

PubMed

de Weert, J P A; Keijzer, T J S; van Gaans, P F M

2014-12-01

In situ chemical oxidation (ISCO) is a soil remediation technique to remove organic pollutants from soil and groundwater with oxidants, like KMnO4. However, also natural organic compounds in soils are being oxidized, which makes the technique less efficient. Laboratory experiments were performed to investigate the influence of temperature on this efficiency, through its effect on the relative oxidation rates - by permanganate - of natural organic compounds and organic pollutants at 16 and 15°C. Specific types of organic matter used were cellulose, oak wood, anthracite, reed - and forest peat, in addition to two natural soils. Dense Non-Aqueous Phase Liquid-tetrachloroethene (DNAPL-PCE), DNAPL trichloroethene (DNAPL-TCE) and a mixture of DNAPL-PCE, -TCE and -hexachlorobutadiene were tested as pollutants. Compared to 16°C, oxidation was slower at 5°C for the specific types of organic matter and the natural soils, with exception of anthracite, which was unreactive. The oxidation rate of DNAPL TCE was lower at 5°C too. However, at this temperature oxidation was fast, implying that no competitive loss to natural organic compounds will be expected in field applications by lowering temperature. Oxidation of DNAPL-PCE and PCE in the mixture proceeded at equal rates at both temperatures, due to the dissolution rate as limiting factor. These results show that applying permanganate ISCO to DNAPL contamination at lower temperatures will limit the oxidation of natural organic matter, without substantially affecting the oxidation rate of the contaminant. This will make such remediation more effective and sustainable in view of protecting natural soil quality. Copyright © 2014 Elsevier Ltd. All rights reserved.

Modern Methods for Isolation, Purification, and Cultivation of Soil Cyanobacteria.

PubMed

Temraleeva, A D; Dronova, S A; Moskalenko, S V; Didovich, S V

2016-07-01

Up-to-date methods for isolation of cyanobacteria from soil samples, removal of accompanying microflora, obtaining axenic strains, and -conditions and media for subsequnt cultivation are reviewed. Char acterization of soil as a specific habitat for cyanobacteria is provided. Comparative analysis of pH and ele- mental composition of the liquid phase of most soil types with the media for cultivating cyanobacteria is car- ried out. The functional role of the major components required for the cultivation of cyanobacteria is de- scribed. The problems associated with isolation, purification, and cultivation of soil cyanobacteria, as well as the relevant solutions, are discussed.

Managing soil microbial communities in grain production systems through cropping practices

NASA Astrophysics Data System (ADS)

Gupta, Vadakattu

2013-04-01

Cropping practices can significantly influence the composition and activity of soil microbial communities with consequences to plant growth and production. Plant type can affect functional capacity of different groups of biota in the soil surrounding their roots, rhizosphere, influencing plant nutrition, beneficial symbioses, pests and diseases and overall plant health and crop production. The interaction between different players in the rhizosphere is due to the plethora of carbon and nutritional compounds, root-specific chemical signals and growth regulators that originate from the plant and are modulated by the physico-chemical properties of soils. A number of plant and environmental factors and management practices can influence the quantity and quality of rhizodeposition and in turn affect the composition of rhizosphere biota communities, microbe-fauna interactions and biological processes. Some of the examples of rhizosphere interactions that are currently considered important are: proliferation of plant and variety specific genera or groups of microbiota, induction of genes involved in symbiosis and virulence, promoter activity in biocontrol agents and genes correlated with root adhesion and border cell quality and quantity. The observation of variety-based differences in rhizodeposition and associated changes in rhizosphere microbial diversity and function suggests the possibility for the development of varieties with specific root-microbe interactions targeted for soil type and environment i.e. designer rhizospheres. Spatial location of microorganisms in the heterogeneous field soil matrix can have significant impacts on biological processes. Therefore, for rhizosphere research to be effective in variable seasonal climate and soil conditions, it must be evaluated in the field and within a farming systems context. With the current focus on security of food to feed the growing global populations through sustainable agricultural production systems there is a need to develop innovative cropping systems that are both economically and environmentally sustainable.

Chemical composition and Zn bioavailability of the soil solution extracted from Zn amended variable charge soils.

PubMed

Zampella, Mariavittoria; Adamo, Paola

2010-01-01

A study on variable charge soils (volcanic Italian and podzolic Scottish soils) was performed to investigate the influence of soil properties on the chemical composition of soil solution. Zinc speciation, bioavailability and toxicity in the soil solution were examined. The soils were spiked with increasing amounts of Zn (0, 100, 200, 400 and 1000 mg/kg) and the soil solutions were extracted using rhizon soil moisture samplers. The pH, total organic carbon (TOC), base cations, anions, total Zn and free Zn2+ in soil solution were analysed. A rapid bioassay with the luminescent bacterium Escherichia coli HB101 pUCD607 was performed to assess Zn toxicity. The influence of soil type and Zn treatments on the chemical composition of soil solution and on Zn toxicity was considered and discussed. Different trends of total and free Zn concentrations, base cations desorption and luminescence of E. coli HB101 pUCD607 were observed. The soil solution extracted from the volcanic soils had very low total and free Zn concentrations and showed specific Zn2+/Ca2+ exchange. The soil solution from the podzolic soil had much higher total and free Zn concentrations and showed no evidence of specific Zn2+/Ca2+ exchange. In comparison with the subalkaline volcanic soils, the acidic podzol showed enhanced levels of toxic free Zn2+ and consequently stronger effects on E. coli viability.

Geochemical characterization of elements in Vitis vinifera cv. Negroamaro grape berries grown under different soil managements.

PubMed

Pepi, Salvatore; Coletta, Antonio; Crupi, Pasquale; Leis, Marilena; Russo, Sabrina; Sansone, Luigi; Tassinari, Renzo; Chicca, Milvia; Vaccaro, Carmela

2016-04-01

The present geochemical study concerns the impact of viticultural practices in the chemical composition of the grape cultivar "Negroamaro" in Apulia, a southern Italian region renowned for its quality wine. Three types of soil management (SM), two cover cropping with different mixtures, and a soil tillage were considered. For each SM, the vines were irrigated according to two irrigation levels. Chemical composition of soil and of berries of Vitis vinifera cultivar "Negroamaro" were analyzed by X-ray fluorescence, inductively coupled plasma-mass spectrometry and multivariate statistics (linear discrimination analysis). In detail, we investigated major and trace elements behavior in the soil according to irrigation levels, the related index of bioaccumulation (BA) and the relationship between trace element concentration and soil management in "Negroamaro" grapes. The results indicate that soil management affects the mobility of major and trace elements. A specific assimilation of these elements in grapes from vines grown under different soil management was confirmed by BA. Multivariate statistics allowed to associate the vines to the type of soil management. This geochemical characterization of elements could be useful to develop fingerprints of vines of the cultivar "Negroamaro" according to soil management and geographical origin.

Optimization of viral resuspension methods for carbon-rich soils along a permafrost thaw gradient

DOE PAGES

Trubl, Gareth; Solonenko, Natalie; Chittick, Lauren; ...

2016-05-17

Permafrost stores approximately 50% of global soil carbon (C) in a frozen form; it is thawing rapidly under climate change, and little is known about viral communities in these soils or their roles in C cycling. In permafrost soils, microorganisms contribute significantly to C cycling, and characterizing them has recently been shown to improve prediction of ecosystem function. In other ecosystems, viruses have broad ecosystem and community impacts ranging from host cell mortality and organic matter cycling to horizontal gene transfer and reprogramming of core microbial metabolisms. Here we developed an optimized protocol to extract viruses from three types ofmore » high organic-matter peatland soils across a permafrost thaw gradient (palsa, moss-dominated bog, and sedge-dominated fen). Three separate experiments were used to evaluate the impact of chemical buffers, physical dispersion, storage conditions, and concentration and purification methods on viral yields. The most successful protocol, amended potassium citrate buffer with bead-beating or vortexing and BSA, yielded on average as much as 2-fold more virus-like particles (VLPs) g –1of soil than other methods tested. All method combinations yielded VLPs g –1of soil on the 10 8order of magnitude across all three soil types. The different storage and concentration methods did not yield significantly more VLPs g –1of soil among the soil types. In conclusion, this research provides much-needed guidelines for resuspending viruses from soils, specifically carbon-rich soils, paving the way for incorporating viruses into soil ecology studies.« less

Optimization of viral resuspension methods for carbon-rich soils along a permafrost thaw gradient

DOE Office of Scientific and Technical Information (OSTI.GOV)

Trubl, Gareth; Solonenko, Natalie; Chittick, Lauren

Permafrost stores approximately 50% of global soil carbon (C) in a frozen form; it is thawing rapidly under climate change, and little is known about viral communities in these soils or their roles in C cycling. In permafrost soils, microorganisms contribute significantly to C cycling, and characterizing them has recently been shown to improve prediction of ecosystem function. In other ecosystems, viruses have broad ecosystem and community impacts ranging from host cell mortality and organic matter cycling to horizontal gene transfer and reprogramming of core microbial metabolisms. Here we developed an optimized protocol to extract viruses from three types ofmore » high organic-matter peatland soils across a permafrost thaw gradient (palsa, moss-dominated bog, and sedge-dominated fen). Three separate experiments were used to evaluate the impact of chemical buffers, physical dispersion, storage conditions, and concentration and purification methods on viral yields. The most successful protocol, amended potassium citrate buffer with bead-beating or vortexing and BSA, yielded on average as much as 2-fold more virus-like particles (VLPs) g –1of soil than other methods tested. All method combinations yielded VLPs g –1of soil on the 10 8order of magnitude across all three soil types. The different storage and concentration methods did not yield significantly more VLPs g –1of soil among the soil types. In conclusion, this research provides much-needed guidelines for resuspending viruses from soils, specifically carbon-rich soils, paving the way for incorporating viruses into soil ecology studies.« less

Comparing soil functions for a wide range of agriculture soils focusing on production for bioenergy using a combined isotope-based observation and modelling approach

NASA Astrophysics Data System (ADS)

Leistert, Hannes; Herbstritt, Barbara; Weiler, Markus

2017-04-01

Increase crop production for bioenergy will result in changes in land use and the resulting soil functions and may generate new chances and risks. However, detailed data and information are still missing how soil function may be altered under changing crop productions for bioenergy, in particular for a wide range of agricultural soils since most data are currently derived from individual experimental sites studying different bioenergy crops at one location. We developed a new, rapid measurement approach to investigate the influence of bioenergy plants on the water cycle and different soil functions (filter and buffer of water and N-cycling). For this approach, we drilled 89 soil cores (1-3 m deep) in spring and fall at 11 sites with different soil properties and climatic conditions comparing different crops (grass, corn, willow, poplar, and other less common bioenergy crops) and analyzing 1150 soil samples for water content, nitrate concentration and stable water isotopes. We benchmarked a soil hydrological model (1-D numerical Richards equation, ADE, water isotope fractionation including liquid and vapor composition of isotopes) using longer-term climate variables and water isotopes in precipitation to derive crop specific parameterization and to specifically validate the differences in water transport and water partitioning into evaporation, transpiration and groundwater recharge among the sites and crops using the water isotopes in particular. The model simulation were in good agreement with the observed isotope profiles and allowed us to differentiate among the different crops. We defined different indicators for the soil functions considered in this study. These indicators included the proportion of groundwater recharge, transit time of water (different percentiles) though the upper 2m and nutrient leaching potential (e.g. nitrate) during the dormant season from the rooting zone. The parameterized model was first used to calculate the indicators for the sampled locations and to derive the changes in soil functions by altering the land cover among the different bioenergy crops in comparison to the grassland as a reference. We could show that percolation is strongly influenced by the crops and climate, the transit time is influenced by a combination of soil type, climate and land use, but the effect of soil type is very strong and the nitrate leaching is strongly influenced by soil type. The high variability of transit times and nitrate leaching are due to high variability of the temporal distribution of precipitation. Finally, the model was used to regionalized the indicators to a wide range of soils in the state of Baden-Württemberg and to assess if there are locations where bioenergy crops may improve the considered soil function. Our idea behind this was to propose location where specific bioenergy crops may be highly suitable to improve the current soil function to increase for example the protection of groundwater for drinking water, reduce erosion risk or increase water availability. The proposed method allows to assess the influence of different bioenergy crops on soil functions without costly multi-year measurement systems for assessing the soil functions using soil water content measurements or/and soil water suction devices.

The Application of EM38: Determination of Soil Parameters, Selection of Soil Sampling Points and Use in Agriculture and Archaeology

PubMed Central

Heil, Kurt

2017-01-01

Fast and accurate assessment of within-field variation is essential for detecting field-wide heterogeneity and contributing to improvements in the management of agricultural lands. The goal of this paper is to provide an overview of field scale characterization by electromagnetic induction, firstly with a focus on the applications of EM38 to salinity, soil texture, water content and soil water turnover, soil types and boundaries, nutrients and N-turnover and soil sampling designs. Furthermore, results concerning special applications in agriculture, horticulture and archaeology are included. In addition to these investigations, this survey also presents a wide range of practical methods for use. Secondly, the effectiveness of conductivity readings for a specific target in a specific locality is determined by the intensity at which soil factors influence these values in relationship to the desired information. The interpretation and utility of apparent electrical conductivity (ECa) readings are highly location- and soil-specific, so soil properties influencing the measurement of ECa must be clearly understood. From the various calibration results, it appears that regression constants for the relationships between ECa, electrical conductivity of aqueous soil extracts (ECe), texture, yield, etc., are not necessarily transferable from one region to another. The modelling of ECa, soil properties, climate and yield are important for identifying the location to which specific utilizations of ECa technology (e.g., ECa−texture relationships) can be appropriately applied. In general, the determination of absolute levels of ECa is frequently not possible, but it appears to be quite a robust method to detect relative differences, both spatially and temporally. Often, the use of ECa is restricted to its application as a covariate or the use of the readings in a relative sense rather than as absolute terms. PMID:29113048

What is the story that soil tells us? Environmental and anthropogenic change

NASA Astrophysics Data System (ADS)

Shanskiy, Merrit; Kriiska, Aivar; Oras, Ester

2015-04-01

The archaeological studies have shown the evidence of human impact on soils functioning. On the other hand, the changed conditions of normal soil functioning will influence the human settlement in specific area. This study is part of a wider archaeological project on the environmental studies of the Kohtla Iron Age sacrificial site. To obtain a data about soil cover around historical finding some 1500 years ago, special sampling and research were carried out at the study site located in Kohtla Vanaküla, northeastern Estonia where a valuable collection of metal weapons and tools was discovered. The aim of current study was to analyze the site-specific soils to find out the connections between soil records and human mediated historical land degradation. Also, the site specific conditions were studied in order to understand its impact on archaeological artefacts and their preservation conditions. For the current investigation the soil sampling was carried out in July, 2014. The soils were described based on 20 soil pits. The site-specific soil morphological description was finalized and chemical analyses were performed at the laboratory of Soil Science and Agrochemistry, Estonian University of Life Science. Soil was air dried and passed through a 2- mm sieve. The chemical elements (P, K, Ca, Mg, Fe) were analyzed by using Mehlich 3 extraction by MP-AES analytical performance. Soil pH was measured from the soil suspension with 1M KCl. Ctot was analysed by dry combustion method in a vario MAX CNS elemental analyser (ELEMENTAR, Germany). Organic C was determined with elemental analyzer. According to World Reference Base for Soil Resources (WRB) classification system (FAO, 1998), the soil in the study area belongs to the soils subgroups of Gley soils on yellowish-grey calcareous till. The study area soil cover has strong anthropogenic influence due to different human activities. First, there are agricultural activities in the area. Although the region is currently exploited as grassland for animal grazing, it is known to have been ploughed in the past, resulting in amelioration of this soil type. Second, a result of surrounding oil-shale mining the status of groundwater has been changed as well.

Specific Features of Profile Distribution and Crystallochemistry of Phyllosilicates in Soils of the Cisbaikal Forest-Steppe

NASA Astrophysics Data System (ADS)

Chizhikova, N. P.; Gamzikov, G. P.; Chechetko, E. S.

2018-01-01

The mineralogical composition of agrogray, dark gray, and agro-dark gray soils (Luvic Greyzemic Retic Phaeozems); agro-dark gray residual-calcareous soils (Calcaric Cambic Phaeozems); clay-illuvial agrochernozems (Luvic Chernic Phaeozems); and agrochernozems with migrational-mycelial carbonates (Haplic Chernozems) developed in the forest-steppe of Central Siberia within the Irkutsk Depression has been studied. The clay (<1 μm) fraction separated from these soils consists of mixed-layer minerals with alternating layers of hydromica, smectite, vermiculite, and chlorite; the proportions between them change within the soil profiles. The clay fraction also contains hydromicas, kaolinite, chlorite, and some admixture of the fine-dispersed quartz. Each type of the soils is characterized by its own distribution pattern of clay material with specific alternation of layers in the mixed-layer formations. Mixed-layer minerals of the chlorite-vermiculite type predominate in the upper horizons of texture-differentiated soils. Down the soil profile, the content of mixed-layer mica-smectitic minerals increases. In the clay fraction of arable dark gray-humus soils with residual carbonates, the distribution of the clay fraction and major mineral phases in the soil profile is relatively even. An increased content of well-crystallized kaolinite is typical of these soils. The parent material of agrochernozems has a layered character: the upper horizons are generally depleted of clay, and the middle-profile and lower horizons are characterized by the considerable kaolinite content. In general, the clay material of soils of the Tulun-Irkutsk forest-steppe differs considerably from the clay material of foreststeppe soils developed from loesslike and mantle loams in the European part of Russia. In particular, this difference is seen in the proportions between major mineral phases and between biotitic and muscovitic components, as well as in the degree of crystallinity and behavior of kaolinite and chlorite.

Introducing litter quality to the ecosystem model LPJ-GUESS: Effects on short- and long-term soil carbon dynamics

NASA Astrophysics Data System (ADS)

Portner, Hanspeter; Wolf, Annett; Rühr, Nadine; Bugmann, Harald

2010-05-01

Many biogeochemical models have been applied to study the response of the carbon cycle to changes in climate, whereby the process of carbon uptake (photosynthesis) has usually gained more attention than the equally important process of carbon release by respiration. The decomposition of soil organic matter is driven by a combination of factors like soil temperature, soil moisture and litter quality. We have introduced dependence on litter substrate quality to heterotrophic soil respiration in the ecosystem model LPJ-GUESS [Smith et al.(2001)]. We were interested in differences in model projections before and after the inclusion of the dependency both in respect to short- and long-term soil carbon dynamics. The standard implementation of heterotrophic soil respiration in LPJ-GUESS is a simple carbon three-pool model whose decay rates are dependent on soil temperature and soil moisture. We have added dependence on litter quality by coupling LPJ-GUESS to the soil carbon model Yasso07 [Tuomi et al.(2008)]. The Yasso07 model is based on an extensive number of measurements of litter decomposition of forest soils. Apart from the dependence on soil temperature and soil moisture, the Yasso07 model uses carbon soil pools representing different substrate qualities: acid hydrolyzable, water soluble, ethanol soluble, lignin compounds and humus. Additionally Yasso07 differentiates between woody and non-woody litter. In contrary to the reference implementation of LPJ-GUESS, in the new model implementation, the litter now is divided according to its specific quality and added to the corresponding soil carbon pool. The litter quality thereby differs between litter source (leaves, roots, stems) and plant functional type (broadleaved, needleleaved, grass). The two contrasting model implementations were compared and validated at one specific CarboEuropeIP site (Lägern, Switzerland) and on a broader scale all over Switzerland. Our focus lay on the soil respiration for the years 2006 and 2007 [Rühr(2009)] and present soil carbon stocks [Heim et al.(2009)]. Our Results show, that for short-term soil carbon dynamics, e.g. estimates of heterotrophic soil respiration on an annual basis, the inclusion of the dependency on litter quality is not necessary, as the differences are minor only. However, when considering long-term soil carbon dynamics, e.g. simulated estimates of present soil carbon content, the dependency on litter quality shows effect, as there are correlations with specific site factors such as site location and forest type. The inclusion of the dependence on litter quality therefore may be of importance for the projection of future soil carbon dynamics, as forest types may well be altered due to climatic change. References [Heim et al.(2009)] A. Heim, L. Wehrli, W. Eugster, and M.W.I. Schmidt. Effects of sampling design on the probability to detect soil carbon stock changes at the swiss CarboEurope site Lägeren. Geoderma, 149(3-4):347-354, 2009. [Rühr(2009)] Nadine Katrin Rühr. Soil respiration in a mixed mountain forest : environmental drivers and partitioning of component fluxes. PhD thesis, ETH, 2009. [Smith et al.(2001)] Benjamin Smith, I. Colin Prentice, and Martin T. Sykes. Representation of vegetation dynamics in the modelling of terrestrial ecosystems: comparing two contrasting approaches within european climate space. Global Ecology and Biogeography, 10(6):621-637, 2001. [Tuomi et al.(2008)] Mikko Tuomi, Pekka Vanhala, Kristiina Karhu, Hannu Fritze, and Jari Liski. Heterotrophic soil respiration-Comparison of different models describing its temperature dependence. Ecological Modelling, 211(1-2): 182-190, 2008.

Chemical, physical and biological factors affecting wood decomposition in forest soils

Treesearch

Martin Jurgensen; Peter Laks; David Reed; Anne Collins; Deborah Page-Dumroese; Douglas Crawford

2004-01-01

Organic matter (OM) decomposition is an important variable in forest productivity and determining the potential of forest soils to sequester atmospheric CO2 (Grigal and Vance 2000; Kimble et al. 2003). Studies using OM from a particular location gives site-specific decomposition information, but differences in OM type and quality make it difficult to compare results...

Soil transference patterns on bras: Image processing and laboratory dragging experiments.

PubMed

Murray, Kathleen R; Fitzpatrick, Robert W; Bottrill, Ralph S; Berry, Ron; Kobus, Hilton

2016-01-01

In a recent Australian homicide, trace soil on the victim's clothing suggested she was initially attacked in her front yard and not the park where her body was buried. However the important issue that emerged during the trial was how soil was transferred to her clothing. This became the catalyst for designing a range of soil transference experiments (STEs) to study, recognise and classify soil patterns transferred onto fabric when a body is dragged across a soil surface. Soil deposits of interest in this murder were on the victim's bra and this paper reports the results of anthropogenic soil transfer to bra-cups and straps caused by dragging. Transfer patterns were recorded by digital photography and photomicroscopy. Eight soil transfer patterns on fabric, specific to dragging as the transfer method, appeared consistently throughout the STEs. The distinctive soil patterns were largely dependent on a wide range of soil features that were measured and identified for each soil tested using X-ray Diffraction and Non-Dispersive Infra-Red analysis. Digital photographs of soil transfer patterns on fabric were analysed using image processing software to provide a soil object-oriented classification of all soil objects with a diameter of 2 pixels and above transferred. Although soil transfer patterns were easily identifiable by naked-eye alone, image processing software provided objective numerical data to support this traditional (but subjective) interpretation. Image software soil colour analysis assigned a range of Munsell colours to identify and compare trace soil on fabric to other trace soil evidence from the same location; without requiring a spectrophotometer. Trace soil from the same location was identified by linking soils with similar dominant and sub-dominant Munsell colour peaks. Image processing numerical data on the quantity of soil transferred to fabric, enabled a relationship to be discovered between soil type, clay mineralogy (smectite), particle size and soil moisture content that would not have been possible otherwise. Soil type (e.g. Anthropogenic, gravelly sandy loam soil or Natural, organic-rich soil), clay mineralogy (smectite) and soil moisture content were the greatest influencing factors in all the dragging soil transference tests (both naked eye and measured properties) to explain the eight categories of soil transference patterns recorded. This study was intended to develop a method for dragging soil transference laboratory experiments and create a baseline of preliminary soil type/property knowledge. Results confirm the need to better understand soil behaviour and properties of clothing fabrics by further testing of a wider range of soil types and clay mineral properties. Copyright © 2015 Elsevier Ireland Ltd. All rights reserved.

Molecular diversity of arbuscular mycorrhizal fungi in relation to soil chemical properties and heavy metal contamination.

PubMed

Zarei, Mehdi; Hempel, Stefan; Wubet, Tesfaye; Schäfer, Tina; Savaghebi, Gholamreza; Jouzani, Gholamreza Salehi; Nekouei, Mojtaba Khayam; Buscot, François

2010-08-01

Abundance and diversity of arbuscular mycorrhizal fungi (AMF) associated with dominant plant species were studied along a transect from highly lead (Pb) and zinc (Zn) polluted to non-polluted soil at the Anguran open pit mine in Iran. Using an established primer set for AMF in the internal transcribed spacer (ITS) region of rDNA, nine different AMF sequence types were distinguished after phylogenetic analyses, showing remarkable differences in their distribution patterns along the transect. With decreasing Pb and Zn concentration, the number of AMF sequence types increased, however one sequence type was only found in the highly contaminated area. Multivariate statistical analysis revealed that further factors than HM soil concentration affect the AMF community at contaminated sites. Specifically, the soils' calcium carbonate equivalent and available P proved to be of importance, which illustrates that field studies on AMF distribution should also consider important environmental factors and their possible interactions. Copyright 2010 Elsevier Ltd. All rights reserved.

DOSoReMI.hu: collection of countrywide DSM products partly according to GSM.net specifications, partly driven by specific user demands

NASA Astrophysics Data System (ADS)

Pásztor, László; Laborczi, Annamária; Takács, Katalin; Szatmári, Gábor; Illés, Gábor; Bakacsi, Zsófia; Szabó, József

2017-04-01

Due to former soil surveys and mapping activities significant amount of soil information has accumulated in Hungary. In traditional soil mapping the creation of a new map was troublesome and laborious. As a consequence, robust maps were elaborated and rather the demands were fitted to the available map products. Until recently spatial soil information demands have been serviced with the available datasets either in their actual form or after certain specific and often enforced, thematic and spatial inference. Considerable imperfection may occur in the accuracy and reliability of the map products, since there might be significant discrepancies between the available data and the expected information. The DOSoReMI.hu (Digital, Optimized, Soil Related Maps and Information in Hungary) project was started intentionally for the renewal of the national soil spatial infrastructure in Hungary. During our activities we have significantly extended the potential, how soil information requirements could be satisfied. Soil property, soil type as well as functional soil maps were targeted. The set of the applied digital soil mapping techniques has been gradually broadened incorporating and eventually integrating geostatistical, data mining and GIS tools. Soil property maps have been compiled partly according to GSM.net specifications, partly by slightly or more strictly changing some of their predefined parameters (depth intervals, pixel size, property etc.) according to the specific demands on the final products. The elaborated primary maps were further processed, since even DOSoReMI.hu intended to take steps for the regionalization of higher level soil information (processes, functions, and services) involving crop models in the spatial modelling. The framework of DOSoReMI.hu also provides opportunity for the elaboration of goal specific soil maps, with the prescription of the parameters (thematic, resolution, accuracy, reliability etc.) characterizing the map product. As a result, unique digital soil map products (in a more general meaning) were elaborated regionalizing specific soil (related) features, which were never mapped before, even nationally with high ( 1 ha) spatial resolution. Based upon the collected experiences, the full range of GSM.net products were also targeted. The web publishing of the results was also elaborated creating a proper WMS environment. Our paper will present the resulted national maps furthermore some conclusions drawn from the experiences.] Acknowledgement: Our work was supported by the Hungarian National Scientific Research Foundation (OTKA) under Grant K105167 and AGRARKLÍMA.2 VKSZ_12-1-2013-0034.

Disease Suppressive Soils: New Insights from the Soil Microbiome.

PubMed

Schlatter, Daniel; Kinkel, Linda; Thomashow, Linda; Weller, David; Paulitz, Timothy

2017-11-01

Soils suppressive to soilborne pathogens have been identified worldwide for almost 60 years and attributed mainly to suppressive or antagonistic microorganisms. Rather than identifying, testing and applying potential biocontrol agents in an inundative fashion, research into suppressive soils has attempted to understand how indigenous microbiomes can reduce disease, even in the presence of the pathogen, susceptible host, and favorable environment. Recent advances in next-generation sequencing of microbiomes have provided new tools to reexamine and further characterize the nature of these soils. Two general types of suppression have been described: specific and general suppression, and theories have been developed around these two models. In this review, we will present three examples of currently-studied model systems with features representative of specific and general suppressiveness: suppression to take-all (Gaeumannomyces graminis var. tritici), Rhizoctonia bare patch of wheat (Rhizoctonia solani AG-8), and Streptomyces. To compare and contrast the two models of general versus specific suppression, we propose a number of hypotheses about the nature and ecology of microbial populations and communities of suppressive soils. We outline the potential and limitations of new molecular techniques that can provide novel ways of testing these hypotheses. Finally, we consider how this greater understanding of the phytobiome can facilitate sustainable disease management in agriculture by harnessing the potential of indigenous soil microbes.

Soil inoculation with microbial communities - can this become a useful tool in soil remediation?

NASA Astrophysics Data System (ADS)

Krug, Angelika; Wang, Fang; Dörfler, Ulrike; Munch, Jean Charles; Schroll, Reiner

2010-05-01

We artificially loaded different type of agricultural soils with model 14C-labelled chemicals, and we inoculated such soils with different microbial communities as well as isolated strains to enhance the mineralization of such chemicals. Inocula were introduced by different approaches: (i) soil inocula, (ii) application of isolated strain as well as microbial community via media, (iii) isolated strain as well as microbial community attached to a carrier material. Most of the inoculation experiments were conducted in laboratory but we also tested one of these approaches under real environmental conditions in lysimeters and we could show that the approach was successful. We already could show that inoculating soils with microbial communities attached on a specific carrier material shows the highest mineralization effectiveness and also the highest sustainability. Microbes attached on clay particles preserved their function over a long time period even if the specific microbial substrate was already degraded or at least not detectable any more. Additionally we already could show that in specific cases some soil parameters might reduce the effectiveness of such an approach. Results on isoproturon as a model for phenylurea-herbicides and 1,2,4-trichlorobenzene as an example for an industrially used chemical as well as the corresponding chemicals` degrading microbial communities and isolated strain will be presented.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Taylor, B.B.; Ripp, J.; Sims, R.C.

The Electric Power Research Institute (EPRI) is studying the environmental impact of preservatives associated with in-service utility poles. As part of this endeavor, two EPRI contractors, META Environmental, Inc. (META) and Atlantic Environmental Services, Inc. (Atlantic), have collected soil samples from around wood utility poles nationwide, for various chemical and physical analyses. This report covers the results for 107 pole sites in the US. These pole sites included a range of preservative types, soil types, wood types, pole sizes, and in-service ages. The poles in this study were preserved with one of two types of preservative: pentachlorophenol (PCP) or creosote.more » Approximately 40 to 50 soil samples were collected from each wood pole site in this study. The soil samples collected from the pole sites were analyzed for chlorinated phenols and total petroleum hydrocarbons (TPH) if the pole was preserved with PCP, or for polycyclic aromatic hydrocarbons (PAHs) if the pole was preserved with creosote. The soil samples were also analyzed for physical/chemical parameters, such as pH, total organic carbon (TOC), and cationic exchange capacity (CEC). Additional samples were used in studies to determine biological degradation rates, and soil-water distribution and retardation coefficients of PCP in site soils. Methods of analysis followed standard EPA and ASTM methods, with some modifications in the chemical analyses to enable the efficient processing of many samples with sufficiently low detection limits for this study. All chemical, physical, and site-specific data were stored in a relational computer database.« less

Urban tree effects on soil organic carbon.

PubMed

Edmondson, Jill L; O'Sullivan, Odhran S; Inger, Richard; Potter, Jonathan; McHugh, Nicola; Gaston, Kevin J; Leake, Jonathan R

2014-01-01

Urban trees sequester carbon into biomass and provide many ecosystem service benefits aboveground leading to worldwide tree planting schemes. Since soils hold ∼75% of ecosystem organic carbon, understanding the effect of urban trees on soil organic carbon (SOC) and soil properties that underpin belowground ecosystem services is vital. We use an observational study to investigate effects of three important tree genera and mixed-species woodlands on soil properties (to 1 m depth) compared to adjacent urban grasslands. Aboveground biomass and belowground ecosystem service provision by urban trees are found not to be directly coupled. Indeed, SOC enhancement relative to urban grasslands is genus-specific being highest under Fraxinus excelsior and Acer spp., but similar to grasslands under Quercus robur and mixed woodland. Tree cover type does not influence soil bulk density or C∶N ratio, properties which indicate the ability of soils to provide regulating ecosystem services such as nutrient cycling and flood mitigation. The trends observed in this study suggest that genus selection is important to maximise long-term SOC storage under urban trees, but emerging threats from genus-specific pathogens must also be considered.

Urban Tree Effects on Soil Organic Carbon

PubMed Central

Edmondson, Jill L.; O'Sullivan, Odhran S.; Inger, Richard; Potter, Jonathan; McHugh, Nicola; Gaston, Kevin J.; Leake, Jonathan R.

2014-01-01

Urban trees sequester carbon into biomass and provide many ecosystem service benefits aboveground leading to worldwide tree planting schemes. Since soils hold ∼75% of ecosystem organic carbon, understanding the effect of urban trees on soil organic carbon (SOC) and soil properties that underpin belowground ecosystem services is vital. We use an observational study to investigate effects of three important tree genera and mixed-species woodlands on soil properties (to 1 m depth) compared to adjacent urban grasslands. Aboveground biomass and belowground ecosystem service provision by urban trees are found not to be directly coupled. Indeed, SOC enhancement relative to urban grasslands is genus-specific being highest under Fraxinus excelsior and Acer spp., but similar to grasslands under Quercus robur and mixed woodland. Tree cover type does not influence soil bulk density or C∶N ratio, properties which indicate the ability of soils to provide regulating ecosystem services such as nutrient cycling and flood mitigation. The trends observed in this study suggest that genus selection is important to maximise long-term SOC storage under urban trees, but emerging threats from genus-specific pathogens must also be considered. PMID:25003872

Estonian soil classification as a tool for recording information on soil cover and its matching with local site types, plant covers and humus forms classifications

NASA Astrophysics Data System (ADS)

Kõlli, Raimo; Tõnutare, Tõnu; Rannik, Kaire; Krebstein, Kadri

2015-04-01

Estonian soil classification (ESC) has been used successfully during more than half of century in soil survey, teaching of soil science, generalization of soil databases, arrangement of soils sustainable management and others. The Estonian normally developed (postlithogenic) mineral soils (form 72.4% from total area) are characterized by mean of genetic-functional schema, where the pedo-ecological position of soils (ie. location among other soils) is given by means of three scalars: (i) 8 stage lithic-genetic scalar (from rendzina to podzols) separates soils each from other by parent material, lithic properties, calcareousness, character of soil processes and others, (ii) 6 stage moisture and aeration conditions scalar (from aridic or well aerated to permanently wet or reductic conditions), and (iii) 2-3 stage soil development scalar, which characterizes the intensity of soil forming processes (accumulation of humus, podzolization). The organic soils pedo-ecological schema, which links with histic postlithogenic soils, is elaborated for characterizing of peatlands superficial mantle (form 23.7% from whole soil cover). The position each peat soil species among others on this organic (peat) soil matrix schema is determined by mean of 3 scalars: (i) peat thickness, (ii) type of paludification or peat forming peculiarities, and (iii) stage of peat decomposition or peat type. On the matrix of abnormally developed (synlithogenic) soils (all together 3.9%) the soil species are positioned (i) by proceeding in actual time geological processes as erosion, fluvial processes (at vicinity of rivers, lakes or sea) or transforming by anthropogenic and technological processes, and (ii) by 7 stage moisture conditions (from aridic to subaqual) of soils. The most important functions of soil cover are: (i) being a suitable environment for plant productivity; (ii) forming adequate conditions for decomposition, transformation and conversion of falling litter (characterized by humus cover type); (iii) being compartment for deposition of humus, individual organic compounds, plant nutrition elements, air and water, and (iv) forming (bio)chemically variegated active space for soil type specific edaphon. For studying of ESC matching with others ecosystem compartments classifications the comparative analysis of corresponding classification schemas was done. It may be concluded that forest and natural grasslands site types as well the plant associations of forests and grasslands correlate (match) well with ESC and therefore these compartments may be adequately expressed on soil cover matrixes. Special interest merits humus cover (in many countries known as humus form), which is by the issue natural body between plant and soil or plant cover and soil cover. The humus cover, which lied on superficial part of soil cover, has been formed by functional interrelationships of plants and soils, reflects very well the local pedo-ecological conditions (both productivity and decomposition cycles) and, therefore, the humus cover types are good indicators for characterizing of local pedo-ecological conditions. The classification of humus covers (humus forms) should be bound with soil classifications. It is important to develop a pedocentric approach in treating of fabric and functioning of natural and agro-ecosystems. Such, based on soil properties, ecosystem approach to management and protection natural resources is highly recommended at least in temperate climatic regions. The sound matching of soil and plant cover is of decisive importance for sustainable functioning of ecosystem and in attaining a good environmental status of the area.

Differential response of kabuli and desi chickpea genotypes toward inoculation with PGPR in different soils

PubMed Central

Imran, Asma; Mirza, Muhammad S.; Shah, Tariq M.; Malik, Kauser A.; Hafeez, Fauzia Y.

2015-01-01

Pakistan is among top three chickpea producing countries but the crop is usually grown on marginal lands without irrigation and fertilizer application which significantly hampers its yield. Soil fertility and inoculation with beneficial rhizobacteria play a key role in nodulation and yield of legumes. Four kabuli and six desi chickpea genotypes were, therefore, evaluated for inoculation response with IAA-producing Ochrobactrum ciceri Ca-34T and nitrogen fixing Mesorhizobium ciceri TAL-1148 in single and co-inoculation in two soils. The soil type 1 was previously unplanted marginal soil having low organic matter, P and N contents compared to soil type 2 which was a fertile routinely legume-cultivated soil. The effect of soil fertility status was pronounced and fertile soil on average, produced 31% more nodules, 62% more biomass and 111% grain yield than marginal soil. Inoculation either with O. ciceri alone or its co-inoculation with M. ciceri produced on average higher nodules (42%), biomass (31%), grains yield (64%) and harvest index (72%) in both chickpea genotypes over non-inoculated controls in both soils. Soil 1 showed maximum relative effectiveness of Ca-34T inoculation for kabuli genotypes while soil 2 showed for desi genotypes except B8/02. Desi genotype B8/02 in soil type 1 and Pb-2008 in soil type 2 showed significant yield increase as compared to respective un-inoculated controls. Across bacterial inoculation treatments, grain yield was positively correlated to growth and yield contributing parameters (r = 0.294* to 0.838*** for desi and r = 0.388* to 0.857** for kabuli). PCA and CAT-PCA analyses clearly showed a site-specific response of genotype x bacterial inoculation. Furthermore, the inoculated bacterial strains were able to persist in the rhizosphere showing colonization on root and within nodules. Present study shows that plant growth promoting rhizobacteria (PGPR) inoculation should be integrated with national chickpea breading program in Pakistan especially for marginal soils. Furthermore, the study shows the potential of phytohormone producing strain Ca-34T as promising candidate for development of biofertilizer alongwith nodulating strains to get sustainable yield of kabuli and desi chickpea with minimum inputs at marginal land. PMID:26379638

Quantifying the contribution of riparian soils to the provision of ecosystem services.

PubMed

de Sosa, Laura L; Glanville, Helen C; Marshall, Miles R; Prysor Williams, A; Jones, Davey L

2018-05-15

Riparian areas, the interface between land and freshwater ecosystems, are considered to play a pivotal role in the supply of regulating, provisioning, cultural and supporting services. Most previous studies, however, have tended to focus on intensive agricultural systems and only on a single ecosystem function. Here, we present the first study which attempts to assess a wide range of ecological processes involved in the provision of the ecosystem service of water quality regulation across a diverse range of riparian typologies. Specifically, we focus on 1) evaluating the spatial variation in riparian soils properties with respect to distance with the river and soil depth in contrasting habitat types; 2) gaining further insights into the underlying mechanisms of pollutant removal (i.e. pesticide sorption/degradation, denitrification, etc.) by riparian soils; and 3) quantify and evaluate how riparian vegetation across different habitat types contribute to the provision of watercourse shading. All the habitats were present within a single large catchment and included: (i) improved grassland, (ii) unimproved (semi-natural) grassland, (iii) broadleaf woodland, (iv) coniferous woodland, and (iv) mountain, heath and bog. Taking all the data together, the riparian soils could be statistically separated by habitat type, providing evidence that they deliver ecosystem services to differing extents. Overall, however, our findings seem to contradict the general assumption that soils in riparian area are different from neighbouring (non-riparian) areas and that they possess extra functionality in terms of ecosystem service provision. Watercourse shading was highly habitat specific and was maximal in forests (ca. 52% shade cover) in comparison to the other habitat types (7-17%). Our data suggest that the functioning of riparian areas in less intensive agricultural areas, such as those studied here, may be broadly predicted from the surrounding land use, however, further research is required to critically test this across a wider range of ecosystems. Copyright © 2017 Elsevier B.V. All rights reserved.

Migration Potential of Contaminants in the Soil of Rocky Mountain Arsenal, I. Open Literature Review.

DTIC Science & Technology

1979-01-01

Organochlorine Insecticides. 14 3. Organophosphorous Insecticides. 17 4. DIMP, DCPD and DBCP. 19 B. Inorganics . 22 1. General. 22 2. Heavy Metals.. 24 3...and DBCP. 2. Inorganics - heavy metals and soluble salts. The specific elements or compounds focused on were those which have been shown to exist in...the initial moisture content of the soil was raised S..21 B. Inorganics . 1. General, The two most common types of inorganic contaminants in soil are

Modelling the Impact of Soil Management on Soil Functions

NASA Astrophysics Data System (ADS)

Vogel, H. J.; Weller, U.; Rabot, E.; Stößel, B.; Lang, B.; Wiesmeier, M.; Urbanski, L.; Wollschläger, U.

2017-12-01

Due to an increasing soil loss and an increasing demand for food and energy there is an enormous pressure on soils as the central resource for agricultural production. Besides the importance of soils for biomass production there are other essential soil functions, i.e. filter and buffer for water, carbon sequestration, provision and recycling of nutrients, and habitat for biological activity. All these functions have a direct feed back to biogeochemical cycles and climate. To render agricultural production efficient and sustainable we need to develop model tools that are capable to predict quantitatively the impact of a multitude of management measures on these soil functions. These functions are considered as emergent properties produced by soils as complex systems. The major challenge is to handle the multitude of physical, chemical and biological processes interacting in a non-linear manner. A large number of validated models for specific soil processes are available. However, it is not possible to simulate soil functions by coupling all the relevant processes at the detailed (i.e. molecular) level where they are well understood. A new systems perspective is required to evaluate the ensemble of soil functions and their sensitivity to external forcing. Another challenge is that soils are spatially heterogeneous systems by nature. Soil processes are highly dependent on the local soil properties and, hence, any model to predict soil functions needs to account for the site-specific conditions. For upscaling towards regional scales the spatial distribution of functional soil types need to be taken into account. We propose a new systemic model approach based on a thorough analysis of the interactions between physical, chemical and biological processes considering their site-specific characteristics. It is demonstrated for the example of soil compaction and the recovery of soil structure, water capacity and carbon stocks as a result of plant growth and biological activity. Coupling of the observed nonlinear interactions allows for modeling the stability and resilience of soil systems in terms of their essential functions.

A simplified, data-constrained approach to estimate the permafrost carbon-climate feedback: The PCN Incubation-Panarctic Thermal (PInc-PanTher) Scaling Approach

NASA Astrophysics Data System (ADS)

Koven, C. D.; Schuur, E.; Schaedel, C.; Bohn, T. J.; Burke, E.; Chen, G.; Chen, X.; Ciais, P.; Grosse, G.; Harden, J. W.; Hayes, D. J.; Hugelius, G.; Jafarov, E. E.; Krinner, G.; Kuhry, P.; Lawrence, D. M.; MacDougall, A.; Marchenko, S. S.; McGuire, A. D.; Natali, S.; Nicolsky, D.; Olefeldt, D.; Peng, S.; Romanovsky, V. E.; Schaefer, K. M.; Strauss, J.; Treat, C. C.; Turetsky, M. R.

2015-12-01

We present an approach to estimate the feedback from large-scale thawing of permafrost soils using a simplified, data-constrained model that combines three elements: soil carbon (C) maps and profiles to identify the distribution and type of C in permafrost soils; incubation experiments to quantify the rates of C lost after thaw; and models of soil thermal dynamics in response to climate warming. We call the approach the Permafrost Carbon Network Incubation-Panarctic Thermal scaling approach (PInc-PanTher). The approach assumes that C stocks do not decompose at all when frozen, but once thawed follow set decomposition trajectories as a function of soil temperature. The trajectories are determined according to a 3-pool decomposition model fitted to incubation data using parameters specific to soil horizon types. We calculate litterfall C inputs required to maintain steady-state C balance for the current climate, and hold those inputs constant. Soil temperatures are taken from the soil thermal modules of ecosystem model simulations forced by a common set of future climate change anomalies under two warming scenarios over the period 2010 to 2100.

Maize, switchgrass, and ponderosa pine biochar added to soil increased herbicide sorption and decreased herbicide efficacy.

PubMed

Clay, Sharon A; Krack, Kaitlynn K; Bruggeman, Stephanie A; Papiernik, Sharon; Schumacher, Thomas E

2016-08-02

Biochar, a by-product of pyrolysis made from a wide array of plant biomass when producing biofuels, is a proposed soil amendment to improve soil health. This study measured herbicide sorption and efficacy when soils were treated with low (1% w/w) or high (10% w/w) amounts of biochar manufactured from different feedstocks [maize (Zea mays) stover, switchgrass (Panicum vigatum), and ponderosa pine (Pinus ponderosa)], and treated with different post-processing techniques. Twenty-four hour batch equilibration measured sorption of (14)C-labelled atrazine or 2,4-D to two soil types with and without biochar amendments. Herbicide efficacy was measured with and without biochar using speed of seed germination tests of sensitive species. Biochar amended soils sorbed more herbicide than untreated soils, with major differences due to biochar application rate but minor differences due to biochar type or post-process handling technique. Biochar presence increased the speed of seed germination compared with herbicide alone addition. These data indicate that biochar addition to soil can increase herbicide sorption and reduce efficacy. Evaluation for site-specific biochar applications may be warranted to obtain maximal benefits without compromising other agronomic practices.

Microbiomes associated with infective stages of root-knot and lesion nematodes in soil

PubMed Central

Elhady, Ahmed; Giné, Ariadna; Topalovic, Olivera; Jacquiod, Samuel; Sørensen, Søren J.; Sorribas, Francisco Javier

2017-01-01

Endoparasitic root-knot (Meloidogyne spp.) and lesion (Pratylenchus spp.) nematodes cause considerable damage in agriculture. Before they invade roots to complete their life cycle, soil microbes can attach to their cuticle or surface coat and antagonize the nematode directly or by induction of host plant defenses. We investigated whether the nematode-associated microbiome in soil differs between infective stages of Meloidogyne incognita and Pratylenchus penetrans, and whether it is affected by variation in the composition of microbial communities among soils. Nematodes were incubated in suspensions of five organically and two integrated horticultural production soils, recovered by sieving and analyzed for attached bacteria and fungi after washing off loosely adhering microbes. Significant effects of the soil type and nematode species on nematode-associated fungi and bacteria were revealed as analyzed by community profiling using denaturing gradient gel electrophoresis. Attached microbes represented a small specific subset of the soil microbiome. Two organic soils had very similar bacterial and fungal community profiles, but one of them was strongly suppressive towards root-knot nematodes. They were selected for deep amplicon sequencing of bacterial 16S rRNA genes and fungal ITS. Significant differences among the microbiomes associated with the two species in both soils suggested specific surface epitopes. Among the 28 detected bacterial classes, Betaproteobacteria, Bacilli and Actinobacteria were the most abundant. The most frequently detected fungal genera were Malassezia, Aspergillus and Cladosporium. Attached microbiomes did not statistically differ between these two soils. However, Malassezia globosa and four fungal species of the family Plectosphaerellaceae, and the bacterium Neorhizobium galegae were strongly enriched on M. incognita in the suppressive soil. In conclusion, the highly specific attachment of microbes to infective stages of phytonematodes in soil suggested an ecological role of this association and might be involved in soil suppressiveness towards them. PMID:28472099

A tiered approach for the human health risk assessment for consumption of vegetables from with cadmium-contaminated land in urban areas.

PubMed

Swartjes, Frank A; Versluijs, Kees W; Otte, Piet F

2013-10-01

Consumption of vegetables that are grown in urban areas takes place worldwide. In developing countries, vegetables are traditionally grown in urban areas for cheap food supply. In developing and developed countries, urban gardening is gaining momentum. A problem that arises with urban gardening is the presence of contaminants in soil, which can be taken up by vegetables. In this study, a scientifically-based and practical procedure has been developed for assessing the human health risks from the consumption of vegetables from cadmium-contaminated land. Starting from a contaminated site, the procedure follows a tiered approach which is laid out as follows. In Tier 0, the plausibility of growing vegetables is investigated. In Tier 1 soil concentrations are compared with the human health-based Critical soil concentration. Tier 2 offers the possibility for a detailed site-specific human health risk assessment in which calculated exposure is compared to the toxicological reference dose. In Tier 3, vegetable concentrations are measured and tested following a standardized measurement protocol. To underpin the derivation of the Critical soil concentrations and to develop a tool for site-specific assessment the determination of the representative concentration in vegetables has been evaluated for a range of vegetables. The core of the procedure is based on Freundlich-type plant-soil relations, with the total soil concentration and the soil properties as variables. When a significant plant-soil relation is lacking for a specific vegetable a geometric mean of BioConcentrationFactors (BCF) is used, which is normalized according to soil properties. Subsequently, a 'conservative' vegetable-group-consumption-rate-weighted BioConcentrationFactor is calculated as basis for the Critical soil concentration (Tier 1). The tool to perform site-specific human health risk assessment (Tier 2) includes the calculation of a 'realistic worst case' site-specific vegetable-group-consumption-rate-weighted BioConcentrationFactor. © 2013 Elsevier Inc. All rights reserved.

Environmental Assessment: Disposition of Chiefs’ Circle Residential Structures

DTIC Science & Technology

2012-04-27

the restrooms and kitchen when being used by the CFC and Scouts, respectively. Final - Environmental Assessment...Solid waste (not hazardous waste) associated with the Proposed Action Site includes waste such as kitchen waste, paper, plastics, metal and glass...specific soil groups (hydraquents and udor- thents), and four urban land complexes. The acreage covered by each soil type and its percentage of the

Composition of methane-oxidizing bacterial communities as a function of nutrient loading in the Florida everglades.

PubMed

Chauhan, Ashvini; Pathak, Ashish; Ogram, Andrew

2012-10-01

Agricultural runoff of phosphorus (P) in the northern Florida Everglades has resulted in several ecosystem level changes, including shifts in the microbial ecology of carbon cycling, with significantly higher methane being produced in the nutrient-enriched soils. Little is, however, known of the structure and activities of methane-oxidizing bacteria (MOB) in these environments. To address this, 0 to 10 cm plant-associated soil cores were collected from nutrient-impacted (F1), transition (F4), and unimpacted (U3) areas, sectioned in 2-cm increments, and methane oxidation rates were measured. F1 soils consumed approximately two-fold higher methane than U3 soils; additionally, most probable numbers of methanotrophs were 4-log higher in F1 than U3 soils. Metabolically active MOB containing pmoA sequences were characterized by stable-isotope probing using 10 % (v/v) (13)CH(4). pmoA sequences, encoding the alpha subunit of methane monooxygenase and related to type I methanotrophs, were identified from both impacted and unimpacted soils. Additionally, impacted soils also harbored type II methanotrophs, which have been shown to exhibit preferences for high methane concentrations. Additionally, across all soils, novel pmoA-type sequences were also detected, indicating presence of MOB specific to the Everglades. Multivariate statistical analyses confirmed that eutrophic soils consisted of metabolically distinct MOB community that is likely driven by nutrient enrichment. This study enhances our understanding on the biological fate of methane being produced in productive wetland soils of the Florida Everglades and how nutrient-enrichment affects the composition of methanotroph bacterial communities.

Root exudation and root development of lettuce (Lactuca sativa L. cv. Tizian) as affected by different soils

PubMed Central

Neumann, G.; Bott, S.; Ohler, M. A.; Mock, H.-P.; Lippmann, R.; Grosch, R.; Smalla, K.

2014-01-01

Development and activity of plant roots exhibit high adaptive variability. Although it is well-documented, that physicochemical soil properties can strongly influence root morphology and root exudation, particularly under field conditions, a comparative assessment is complicated by the impact of additional factors, such as climate and cropping history. To overcome these limitations, in this study, field soils originating from an unique experimental plot system with three different soil types, which were stored at the same field site for 10 years and exposed to the same agricultural management practice, were used for an investigation on effects of soil type on root development and root exudation. Lettuce (Lactuca sativa L. cv. Tizian) was grown as a model plant under controlled environmental conditions in a minirhizotrone system equipped with root observation windows (rhizoboxes). Root exudates were collected by placing sorption filters onto the root surface followed by subsequent extraction and GC-MS profiling of the trapped compounds. Surprisingly, even in absence of external stress factors with known impact on root exudation, such as pH extremes, water and nutrient limitations/toxicities or soil structure effects (use of sieved soils), root growth characteristics (root length, fine root development) as well as profiles of root exudates were strongly influenced by the soil type used for plant cultivation. The results coincided well with differences in rhizosphere bacterial communities, detected in field-grown lettuce plants cultivated on the same soils (Schreiter et al., this issue). The findings suggest that the observed differences may be the result of plant interactions with the soil-specific microbiomes. PMID:24478764

Root exudation and root development of lettuce (Lactuca sativa L. cv. Tizian) as affected by different soils.

PubMed

Neumann, G; Bott, S; Ohler, M A; Mock, H-P; Lippmann, R; Grosch, R; Smalla, K

2014-01-01

Development and activity of plant roots exhibit high adaptive variability. Although it is well-documented, that physicochemical soil properties can strongly influence root morphology and root exudation, particularly under field conditions, a comparative assessment is complicated by the impact of additional factors, such as climate and cropping history. To overcome these limitations, in this study, field soils originating from an unique experimental plot system with three different soil types, which were stored at the same field site for 10 years and exposed to the same agricultural management practice, were used for an investigation on effects of soil type on root development and root exudation. Lettuce (Lactuca sativa L. cv. Tizian) was grown as a model plant under controlled environmental conditions in a minirhizotrone system equipped with root observation windows (rhizoboxes). Root exudates were collected by placing sorption filters onto the root surface followed by subsequent extraction and GC-MS profiling of the trapped compounds. Surprisingly, even in absence of external stress factors with known impact on root exudation, such as pH extremes, water and nutrient limitations/toxicities or soil structure effects (use of sieved soils), root growth characteristics (root length, fine root development) as well as profiles of root exudates were strongly influenced by the soil type used for plant cultivation. The results coincided well with differences in rhizosphere bacterial communities, detected in field-grown lettuce plants cultivated on the same soils (Schreiter et al., this issue). The findings suggest that the observed differences may be the result of plant interactions with the soil-specific microbiomes.

An Equivalent cross-section Framework for improving computational efficiency in Distributed Hydrologic Modelling

NASA Astrophysics Data System (ADS)

Khan, Urooj; Tuteja, Narendra; Ajami, Hoori; Sharma, Ashish

2014-05-01

While the potential uses and benefits of distributed catchment simulation models is undeniable, their practical usage is often hindered by the computational resources they demand. To reduce the computational time/effort in distributed hydrological modelling, a new approach of modelling over an equivalent cross-section is investigated where topographical and physiographic properties of first-order sub-basins are aggregated to constitute modelling elements. To formulate an equivalent cross-section, a homogenization test is conducted to assess the loss in accuracy when averaging topographic and physiographic variables, i.e. length, slope, soil depth and soil type. The homogenization test indicates that the accuracy lost in weighting the soil type is greatest, therefore it needs to be weighted in a systematic manner to formulate equivalent cross-sections. If the soil type remains the same within the sub-basin, a single equivalent cross-section is formulated for the entire sub-basin. If the soil type follows a specific pattern, i.e. different soil types near the centre of the river, middle of hillslope and ridge line, three equivalent cross-sections (left bank, right bank and head water) are required. If the soil types are complex and do not follow any specific pattern, multiple equivalent cross-sections are required based on the number of soil types. The equivalent cross-sections are formulated for a series of first order sub-basins by implementing different weighting methods of topographic and physiographic variables of landforms within the entire or part of a hillslope. The formulated equivalent cross-sections are then simulated using a 2-dimensional, Richards' equation based distributed hydrological model. The simulated fluxes are multiplied by the weighted area of each equivalent cross-section to calculate the total fluxes from the sub-basins. The simulated fluxes include horizontal flow, transpiration, soil evaporation, deep drainage and soil moisture. To assess the accuracy of equivalent cross-section approach, the sub-basins are also divided into equally spaced multiple hillslope cross-sections. These cross-sections are simulated in a fully distributed settings using the 2-dimensional, Richards' equation based distributed hydrological model. The simulated fluxes are multiplied by the contributing area of each cross-section to get total fluxes from each sub-basin referred as reference fluxes. The equivalent cross-section approach is investigated for seven first order sub-basins of the McLaughlin catchment of the Snowy River, NSW, Australia, and evaluated in Wagga-Wagga experimental catchment. Our results show that the simulated fluxes using an equivalent cross-section approach are very close to the reference fluxes whereas computational time is reduced of the order of ~4 to ~22 times in comparison to the fully distributed settings. The transpiration and soil evaporation are the dominant fluxes and constitute ~85% of actual rainfall. Overall, the accuracy achieved in dominant fluxes is higher than the other fluxes. The simulated soil moistures from equivalent cross-section approach are compared with the in-situ soil moisture observations in the Wagga-Wagga experimental catchment in NSW, and results found to be consistent. Our results illustrate that the equivalent cross-section approach reduces the computational time significantly while maintaining the same order of accuracy in predicting the hydrological fluxes. As a result, this approach provides a great potential for implementation of distributed hydrological models at regional scales.

The sustainable management of ameliorated peatlands on changed land use conditions; scenarios of constrains and possibilities

NASA Astrophysics Data System (ADS)

Shanskiy, , Merrit; Vollmer, Elis; Penu, Priit

2015-04-01

The utilization of organic soils for forestry or agriculture requires the land amelioration that could result on the peat losses from 15 to 20 t ha-1 in a year on following five years. After five years, the peat losses will be 5 - 15 t ha-1 in a year. The agricultural land resource on different types of organic soils (including ameliorated bogs) in Estonia is 360 000 ha that comprises 41% of total agricultural land area. The landscape iself is a valuable resource that considered to be a set of characteristics that satisfy needs of people using the landscape: economical or non-economical value; ecological, social, recreational, aesthetical, educational, scientific or even protective value. More diverse landscapes have higher biodiversity and yield more services to public, they are also seen as more sustainable and resilient to short-term changes. In order to maintain landscape diversity, sustainable maintenance is important. The purpose of current study was to estimate the land use potential on three different ameliorated peat areas and to develop the methodology for the futher sustainable utilization in order to secure the best ecological functioning of soil while taking into account maintaining and increasing landscape value. Therefore, site specific soil sampling (n=77) was carried out on predetermined eight study sites. Soil samples were analyzed for main agrochemical parameters (n=17; pHKCl, P, K, C%, N%, S%, ash, main anions and cations). This enables determing site-specific best suitable crops and land use scenarios. For the land resource description (soils type, topology) the digital soil map (1: 10,000) and field sudy based database were used for describing the model areas. For more specific identification of the field layers the Agricultural Registers and Information Board (ARIB) and databases of the Common Agricultural Policy (CAP) payments were used for subsidy schemes chekout. Estonian Nature Information System map tool was used to specify the restrictions on study sites by nature conversation on the maps data about nature protected objects and buffer zones or forming restricted areas around those objects. The results will indicate the utilization possibility and most sustainable scenarios for different land use cases. Moreover, the possible changes in soil functioning accordingly to site specific soil conditions will be discussed and presented.

Application of PCR to a clinical and environmental investigation of a case of equine botulism.

PubMed

Szabo, E A; Pemberton, J M; Gibson, A M; Thomas, R J; Pascoe, R R; Desmarchelier, P M

1994-08-01

PCR for the detection of botulinum neurotoxin gene types A to E was used in the investigation of a case of equine botulism. Samples from a foal diagnosed with toxicoinfectious botulism in 1985 were reanalyzed by PCR and the mouse bioassay in conjunction with an environmental survey. Neurotoxin B was detected by mouse bioassay in culture enrichments of serum, spleen, feces, and intestinal contents. PCR results compared well with mouse bioassay results, detecting type B neurotoxin genes in these samples and also in a liver sample. Other neurotoxin types were not detected by either test. Clostridium botulinum type B was shown to be prevalent in soils collected from the area in which the foal was raised. Four methods were used to test for the presence of botulinum neurotoxin-producing organisms in 66 soil samples taken within a 5-km radius: PCR and agarose gel electrophoresis (types A to E), PCR and an enzyme-linked assay (type B), hybridization of crude alkaline cell lysates with a type B-specific probe, and the mouse bioassay (all types). Fewer soil samples were positive for C. botulinum type B by the mouse bioassay (15%) than by any of the DNA-based detection systems. Hybridization of a type B-specific probe to DNA dot blots (26% of the samples were positive) and PCR-enzyme-linked assay (77% of the samples were positive) were used for the rapid analysis of large numbers of samples, with sensitivity limits of 3 x 10(6) and 3,000 cells, respectively. Conventional detection of PCR products by gel electrophoresis was the most sensitive method (300-cell limit), and in the present environmental survey, neurotoxin B genes only were detected in 94% of the samples.

Application of PCR to a clinical and environmental investigation of a case of equine botulism.

PubMed Central

Szabo, E A; Pemberton, J M; Gibson, A M; Thomas, R J; Pascoe, R R; Desmarchelier, P M

1994-01-01

PCR for the detection of botulinum neurotoxin gene types A to E was used in the investigation of a case of equine botulism. Samples from a foal diagnosed with toxicoinfectious botulism in 1985 were reanalyzed by PCR and the mouse bioassay in conjunction with an environmental survey. Neurotoxin B was detected by mouse bioassay in culture enrichments of serum, spleen, feces, and intestinal contents. PCR results compared well with mouse bioassay results, detecting type B neurotoxin genes in these samples and also in a liver sample. Other neurotoxin types were not detected by either test. Clostridium botulinum type B was shown to be prevalent in soils collected from the area in which the foal was raised. Four methods were used to test for the presence of botulinum neurotoxin-producing organisms in 66 soil samples taken within a 5-km radius: PCR and agarose gel electrophoresis (types A to E), PCR and an enzyme-linked assay (type B), hybridization of crude alkaline cell lysates with a type B-specific probe, and the mouse bioassay (all types). Fewer soil samples were positive for C. botulinum type B by the mouse bioassay (15%) than by any of the DNA-based detection systems. Hybridization of a type B-specific probe to DNA dot blots (26% of the samples were positive) and PCR-enzyme-linked assay (77% of the samples were positive) were used for the rapid analysis of large numbers of samples, with sensitivity limits of 3 x 10(6) and 3,000 cells, respectively. Conventional detection of PCR products by gel electrophoresis was the most sensitive method (300-cell limit), and in the present environmental survey, neurotoxin B genes only were detected in 94% of the samples. Images PMID:7989554

Magnetic minerals in soils across the forest-prairie ecotone in NW Minnesota

NASA Astrophysics Data System (ADS)

Maxbauer, D.; Feinberg, J. M.; Fox, D. L.; Nater, E. A.

2016-12-01

Soil pedogenesis results in a complex assemblage of iron oxide minerals that can be disentangled successfully using sensitive magnetic techniques to better delineate specific soil processes. Here, we evaluate the variability in soil processes within forest, prairie, and transitional soils along an 11 km transect of anthropogenically unaltered soils that span the forest-to-prairie ecotone in NW Minnesota. All soils in this study developed on relatively uniform topography, similar glacial till parent material, under a uniform climate, and presumably over similar time intervals. The forest-to-prairie transition zone in this region is controlled by naturally occurring fires, affording the opportunity to evaluate differences in soil processes related to vegetation (forest versus prairie) and burning (prairie and transitional soils). Results suggest that the pedeogenic fraction of magnetite/maghemite in soils is similar in all specimens and is independent of soil type, vegetation, and any effects of burning. Magnetically enhanced horizons have 45% of remanence held by a low-coercivity pedogenic component (likely magnetite/maghemite) regardless of vegetation cover and soil type. Enhancement ratios for magnetic susceptibility and low-field remanences, often used as indicators of pedogenic magnetic minerals, are more variable but remain statistically equivalent across the transect. These results support the hypothesis that pedogenic magnetic minerals in soils mostly reflect ambient climatic conditions regardless of the variability in soil processes related to vegetation and soil type. The non-pedogenic magnetic mineral assemblage shows clear distinctions between the forest, prairie, and transitional soils in hysteresis properties (remanence and coercivity ratios; Mr/Ms and Bc/Bcr, respectively), suggesting that variable processes in these settings influence the local magnetic mineral assemblage, and that it may be possible to use magnetic minerals in paleosols to constrain these processes. This work highlights the importance of isolating the magnetic behavior of pedogenic and non-pedogenic minerals in environmental magnetism studies in order to provide the most rigorous interpretation of past environmental conditions.

Study of the acid-base properties of mineral soil horizons using pK spectroscopy

NASA Astrophysics Data System (ADS)

Shamrikova, E. V.; Vanchikova, E. V.; Ryazanov, M. A.

2007-11-01

The presence of groups 4 and 5 participating in acid-base equilibria was revealed in samples from mineral horizons of the gley-podzolic soil of the Komi Republic using pK spectroscopy (the mathematical processing of potentiometric titration curves for plotting the distribution of acid groups according to their pK values). The specific quantity of acid-base sites in soil samples was calculated. The contribution of organic and mineral soil components to the groups of acid-base sites was estimated. The pK values of groups determining the potential, exchangeable, and unexchangeable acidities were found. The heterogeneity of acid components determining different types of soil acidity was revealed.

The mesofauna in different types of soils under southern taiga spruce forests (Tver oblast)

NASA Astrophysics Data System (ADS)

Gryuntal, S. Yu.

2010-11-01

The soil mesofauna of the burozem, soddy pale-podzolic, and whitish-podzolic soils under three types of southern taiga spruce forests was studied. The mesofauna of all these soils turned out to be similar in terms of the Chilopoda, Staphylinidae (Coleoptera), and Rhagionidae (Diptera) numbers and their predominant concentration in the litter. The zoophages prevailed, and, among the saprophages, primary destroyers were predominant. However, some specific characteristics of the mesofauna in the soils studied were revealed. In the sequence burozem, soddy pale-podzolic, and whitish-podzolic soils, the number of earthworms significantly decreased, while, in the sequence soddy pale-podzolic, burozem, and whitish-podzolic soils, the number of Diplopoda representatives and calciphilic forms became lower and was directly related to the diversity of the deciduous tree species and to the presence of the calcareous moraine close to the surface. In addition, some species can be indicators of particular soil properties. The presence of the road beetle Quedius fuliginosus indicated the elevated moisture of the soils, that of Philonthus decorus pointed to the high humus content, and the presence of the road beetle Tachinus marginellus showed the low acidity of the humus. The low number or the absence of the earthworms Octolasium lacteum and Dendrodril us rubidus f. tenuis indicated higher humus acidity.

Recovery of soil unicellular eukaryotes: an efficiency and activity analysis on the single cell level.

PubMed

Lentendu, Guillaume; Hübschmann, Thomas; Müller, Susann; Dunker, Susanne; Buscot, François; Wilhelm, Christian

2013-12-01

Eukaryotic unicellular organisms are an important part of the soil microbial community, but they are often neglected in soil functional microbial diversity analysis, principally due to the absence of specific investigation methods in the special soil environment. In this study we used a method based on high-density centrifugation to specifically isolate intact algal and yeast cells, with the aim to analyze them with flow cytometry and sort them for further molecular analysis such as deep sequencing. Recovery efficiency was tested at low abundance levels that fit those in natural environments (10(4) to 10(6) cells per g soil). Five algae and five yeast morphospecies isolated from soil were used for the testing. Recovery efficiency was between 1.5 to 43.16% and 2 to 30.2%, respectively, and was dependent on soil type for three of the algae. Control treatments without soil showed that the majority of cells were lost due to the method itself (58% and 55.8% respectively). However, the cell extraction technique did not much compromise cell vitality because a fluorescein di-acetate assay indicated high viability percentages (73.3% and 97.2% of cells, respectively). The low abundant algae and yeast morphospecies recovered from soil were cytometrically analyzed and sorted. Following, their DNA was isolated and amplified using specific primers. The developed workflow enables isolation and enrichment of intact autotrophic and heterotrophic soil unicellular eukaryotes from natural environments for subsequent application of deep sequencing technologies. Copyright © 2013 Elsevier B.V. All rights reserved.

Changes in Landscape-level Carbon Balance of an Arctic Coastal Plain Tundra Ecosystem Between 1970-2100, in Response to Projected Climate Change

NASA Astrophysics Data System (ADS)

Lara, M. J.; McGuire, A. D.; Euskirchen, E. S.; Genet, H.; Sloan, V. L.; Iversen, C. M.; Norby, R. J.; Zhang, Y.; Yuan, F.

2014-12-01

Northern permafrost regions are estimated to cover 16% of the global soil area and account for approximately 50% of the global belowground organic carbon pool. However, there are considerable uncertainties regarding the fate of this soil carbon pool with projected climate warming over the next century. In northern Alaska, nearly 65% of the terrestrial surface is composed of polygonal tundra, where geomorphic land cover types such as high-, flat-, and low-center polygons influence local surface hydrology, plant community composition, nutrient and biogeochemical cycling, over small spatial scales. Due to the lack of representation of these fine-scale geomorphic types and ecosystem processes, in large-scale terrestrial ecosystem models, future uncertainties are large for this tundra region. In this study, we use a new version of the terrestrial ecosystem model (TEM), that couples a dynamic vegetation model (in which plant functional types compete for water, nitrogen, and light) with a dynamic soil organic model (in which temperature, moisture, and associated organic/inorganic carbon and nitrogen pools/fluxes vary together in vertically resolved layers) to simulate ecosystem carbon balance. We parameterized and calibrated this model using data specific to the local climate, vegetation, and soil associated with tundra geomorphic types. We extrapolate model results at a 1km2 resolution across the ~1800 km2 Barrow Peninsula using a tundra geomorphology map, describing ten dominant geomorphic tundra types (Lara et al. submitted), to estimate the likely change in landscape-level carbon balance between 1970 and 2100 in response to projected climate change. Preliminary model runs for this region indicated temporal variability in carbon and active layer dynamics, specific to tundra geomorphic type over time. Overall, results suggest that it is important to consider small-scale discrete polygonal tundra geomorphic types that control local structure and function in regional estimates of carbon balance in northern Alaska.

Methodology to assess and map the potential development of forest ecosystems exposed to climate change and atmospheric nitrogen deposition: A pilot study in Germany.

PubMed

Schröder, Winfried; Nickel, Stefan; Jenssen, Martin; Riediger, Jan

2015-07-15

A methodology for mapping ecosystems and their potential development under climate change and atmospheric nitrogen deposition was developed using examples from Germany. The methodology integrated data on vegetation, soil, climate change and atmospheric nitrogen deposition. These data were used to classify ecosystem types regarding six ecological functions and interrelated structures. Respective data covering 1961-1990 were used for reference. The assessment of functional and structural integrity relies on comparing a current or future state with an ecosystem type-specific reference. While current functions and structures of ecosystems were quantified by measurements, potential future developments were projected by geochemical soil modelling and data from a regional climate change model. The ecosystem types referenced the potential natural vegetation and were mapped using data on current tree species coverage and land use. In this manner, current ecosystem types were derived, which were related to data on elevation, soil texture, and climate for the years 1961-1990. These relations were quantified by Classification and Regression Trees, which were used to map the spatial patterns of ecosystem type clusters for 1961-1990. The climate data for these years were subsequently replaced by the results of a regional climate model for 1991-2010, 2011-2040, and 2041-2070. For each of these periods, one map of ecosystem type clusters was produced and evaluated with regard to the development of areal coverage of ecosystem type clusters over time. This evaluation of the structural aspects of ecological integrity at the national level was added by projecting potential future values of indicators for ecological functions at the site level by using the Very Simple Dynamic soil modelling technique based on climate data and two scenarios of nitrogen deposition as input. The results were compared to the reference and enabled an evaluation of site-specific ecosystem changes over time which proved to be both, positive and negative. Copyright © 2015 Elsevier B.V. All rights reserved.

Vegetation-Associated Impacts on Arctic Tundra Bacterial and Microeukaryotic Communities

PubMed Central

Shi, Yu; Xiang, Xingjia; Shen, Congcong; Neufeld, Josh D.; Walker, Virginia K.

2014-01-01

The Arctic is experiencing rapid vegetation changes, such as shrub and tree line expansion, due to climate warming, as well as increased wetland variability due to hydrological changes associated with permafrost thawing. These changes are of global concern because changes in vegetation may increase tundra soil biogeochemical processes that would significantly enhance atmospheric CO2 concentrations. Predicting the latter will at least partly depend on knowing the structure, functional activities, and distributions of soil microbes among the vegetation types across Arctic landscapes. Here we investigated the bacterial and microeukaryotic community structures in soils from the four principal low Arctic tundra vegetation types: wet sedge, birch hummock, tall birch, and dry heath. Sequencing of rRNA gene fragments indicated that the wet sedge and tall birch communities differed significantly from each other and from those associated with the other two dominant vegetation types. Distinct microbial communities were associated with soil pH, ammonium concentration, carbon/nitrogen (C/N) ratio, and moisture content. In soils with similar moisture contents and pHs (excluding wet sedge), bacterial, fungal, and total eukaryotic communities were correlated with the ammonium concentration, dissolved organic nitrogen (DON) content, and C/N ratio. Operational taxonomic unit (OTU) richness, Faith's phylogenetic diversity, and the Shannon species-level index (H′) were generally lower in the tall birch soil than in soil from the other vegetation types, with pH being strongly correlated with bacterial richness and Faith's phylogenetic diversity. Together, these results suggest that Arctic soil feedback responses to climate change will be vegetation specific not just because of distinctive substrates and environmental characteristics but also, potentially, because of inherent differences in microbial community structure. PMID:25362064

Vegetation-associated impacts on arctic tundra bacterial and microeukaryotic communities.

PubMed

Shi, Yu; Xiang, Xingjia; Shen, Congcong; Chu, Haiyan; Neufeld, Josh D; Walker, Virginia K; Grogan, Paul

2015-01-01

The Arctic is experiencing rapid vegetation changes, such as shrub and tree line expansion, due to climate warming, as well as increased wetland variability due to hydrological changes associated with permafrost thawing. These changes are of global concern because changes in vegetation may increase tundra soil biogeochemical processes that would significantly enhance atmospheric CO2 concentrations. Predicting the latter will at least partly depend on knowing the structure, functional activities, and distributions of soil microbes among the vegetation types across Arctic landscapes. Here we investigated the bacterial and microeukaryotic community structures in soils from the four principal low Arctic tundra vegetation types: wet sedge, birch hummock, tall birch, and dry heath. Sequencing of rRNA gene fragments indicated that the wet sedge and tall birch communities differed significantly from each other and from those associated with the other two dominant vegetation types. Distinct microbial communities were associated with soil pH, ammonium concentration, carbon/nitrogen (C/N) ratio, and moisture content. In soils with similar moisture contents and pHs (excluding wet sedge), bacterial, fungal, and total eukaryotic communities were correlated with the ammonium concentration, dissolved organic nitrogen (DON) content, and C/N ratio. Operational taxonomic unit (OTU) richness, Faith's phylogenetic diversity, and the Shannon species-level index (H') were generally lower in the tall birch soil than in soil from the other vegetation types, with pH being strongly correlated with bacterial richness and Faith's phylogenetic diversity. Together, these results suggest that Arctic soil feedback responses to climate change will be vegetation specific not just because of distinctive substrates and environmental characteristics but also, potentially, because of inherent differences in microbial community structure. Copyright © 2015, American Society for Microbiology. All Rights Reserved.

Testing association between soil bacterial diversity and soil carbon storage on the Loess Plateau.

PubMed

Yang, Yang; Dou, Yanxing; An, Shaoshan

2018-06-01

Bacteria are widely distributed and play an important role in soil carbon (C) cycling. The impact of soil bacterial diversity on soil C storage has been well established, yet little is known about the underlying mechanisms and the interactions among them. Here, we examined the association between soil bacterial diversity and soil C storage in relation to vegetation restoration on the Loess Plateau. The dominant phyla among land use types (artificial forest, Af; natural shrubland, Ns; artificial grassland, Ag; natural grassland, Ng; slope cropland, Sc) were Acidobacteria, Actinobacteria, Alphaproteobacteria, and Betaproteobacteria, which transited from Acidobacteria-dominant to Actinobacteria-dominant community due to vegetation restoration. Soil C storage and the Shannon diversity index of soil bacterial community (H Bacteria ) showed the order Ns > Ng > Af > Ag > Sc, whereas no significant difference was found in Good's coverage (p > .05). Further, a strong relationship was observed between the relative abundance of dominant bacterial groups and soil C storage (p < .05). Additionally, soil bacterial diversity was closely related to soil C storage based on the structural equation model (SEM) and generalized additive models (GAMs). Specifically, soil C storage had the largest deterministic effects, explaining >70% of the variation and suggesting a strong association between soil C storage and soil bacterial diversity. Overall, we propose that further studies are necessary with a focus on the soil bacterial groups with specific functions in relation to soil C storage on the Loess Plateau. Copyright © 2018 Elsevier B.V. All rights reserved.

Soybean crop-water production functions in a humid region across years and soils determined with APEX model

Treesearch

Bangbang Zhang; Gary Feng; Lajpat R. Ahuja; Xiangbin Kong; Ying Ouyang; Ardeshir Adeli; Johnie N. Jenkins

2018-01-01

Crop production as a function of water use or water applied, called the crop water production function (CWPF), is a useful tool for irrigation planning, design and management. However, these functions are not only crop and variety specific they also vary with soil types and climatic conditions (locations). Derivation of multi-year average CWPFs through field...

Single nucleotide polymorphism-based molecular typing of M. leprae from multicase families of leprosy patients and their surroundings to understand the transmission of leprosy.

PubMed

Turankar, R P; Lavania, M; Chaitanya, V S; Sengupta, U; Darlong, J; Darlong, F; Siva Sai, K S R; Jadhav, R S

2014-03-01

The exact mode of transmission of leprosy is not clearly understood; however, many studies have demonstrated active transmission of leprosy around a source case. Families of five active leprosy cases and their household contacts were chosen from a high endemic area in Purulia. Fifty-two soil samples were also collected from different areas of their houses. DNA was extracted from slit-skin smears (SSS) and soil samples and the Mycobacterium leprae-specific RLEP (129 bp) region was amplified using PCR. Molecular typing of M. leprae was performed for all RLEP PCR-positive samples by single nucleotide polymorphism (SNP) typing and confirmation by DNA sequencing. SSS of these five patients and six out of the total 28 contacts were PCR positive for RLEP whereas 17 soil samples out of 52 showed the presence of M. leprae DNA. SNP typing of M. leprae from all RLEP PCR-positive subjects (patients and smear-positive contacts) and 10 soil samples showed the SNP type 1 genotype. M. leprae DNA from the five leprosy patients and the six contacts was further subtyped and the D subtype was noted in all patients and contacts, except for one contact where the C subtype was identified. Typing followed by subtyping of M. leprae clearly revealed that either the contacts were infected by the patients or both patients and contacts had the same source of infection. It also revealed that the type of M. leprae in the soil in the inhabited areas where patients resided was also of the same type as that found in patients. © 2013 The Authors Clinical Microbiology and Infection © 2013 European Society of Clinical Microbiology and Infectious Diseases.

Integrated GIS and multivariate statistical analysis for regional scale assessment of heavy metal soil contamination: A critical review.

PubMed

Hou, Deyi; O'Connor, David; Nathanail, Paul; Tian, Li; Ma, Yan

2017-12-01

Heavy metal soil contamination is associated with potential toxicity to humans or ecotoxicity. Scholars have increasingly used a combination of geographical information science (GIS) with geostatistical and multivariate statistical analysis techniques to examine the spatial distribution of heavy metals in soils at a regional scale. A review of such studies showed that most soil sampling programs were based on grid patterns and composite sampling methodologies. Many programs intended to characterize various soil types and land use types. The most often used sampling depth intervals were 0-0.10 m, or 0-0.20 m, below surface; and the sampling densities used ranged from 0.0004 to 6.1 samples per km 2 , with a median of 0.4 samples per km 2 . The most widely used spatial interpolators were inverse distance weighted interpolation and ordinary kriging; and the most often used multivariate statistical analysis techniques were principal component analysis and cluster analysis. The review also identified several determining and correlating factors in heavy metal distribution in soils, including soil type, soil pH, soil organic matter, land use type, Fe, Al, and heavy metal concentrations. The major natural and anthropogenic sources of heavy metals were found to derive from lithogenic origin, roadway and transportation, atmospheric deposition, wastewater and runoff from industrial and mining facilities, fertilizer application, livestock manure, and sewage sludge. This review argues that the full potential of integrated GIS and multivariate statistical analysis for assessing heavy metal distribution in soils on a regional scale has not yet been fully realized. It is proposed that future research be conducted to map multivariate results in GIS to pinpoint specific anthropogenic sources, to analyze temporal trends in addition to spatial patterns, to optimize modeling parameters, and to expand the use of different multivariate analysis tools beyond principal component analysis (PCA) and cluster analysis (CA). Copyright © 2017 Elsevier Ltd. All rights reserved.

Spatial distribution of enzyme driven reactions at micro-scales

NASA Astrophysics Data System (ADS)

Kandeler, Ellen; Boeddinghaus, Runa; Nassal, Dinah; Preusser, Sebastian; Marhan, Sven; Poll, Christian

2017-04-01

Studies of microbial biogeography can often provide key insights into the physiologies, environmental tolerances, and ecological strategies of soil microorganisms that dominate in natural environments. In comparison with aquatic systems, soils are particularly heterogeneous. Soil heterogeneity results from the interaction of a hierarchical series of interrelated variables that fluctuate at many different spatial and temporal scales. Whereas spatial dependence of chemical and physical soil properties is well known at scales ranging from decimetres to several hundred metres, the spatial structure of soil enzymes is less clear. Previous work has primarily focused on spatial heterogeneity at a single analytical scale using the distribution of individual cells, specific types of organisms or collective parameters such as bacterial abundance or total microbial biomass. There are fewer studies that have considered variations in community function and soil enzyme activities. This presentation will give an overview about recent studies focusing on spatial pattern of different soil enzymes in the terrestrial environment. Whereas zymography allows the visualization of enzyme pattern in the close vicinity of roots, micro-sampling strategies followed by MUF analyses clarify micro-scale pattern of enzymes associated to specific microhabitats (micro-aggregates, organo-mineral complexes, subsoil compartments).

Plant attributes explain the distribution of soil microbial communities in two contrasting regions of the globe.

PubMed

Delgado-Baquerizo, Manuel; Fry, Ellen L; Eldridge, David J; de Vries, Franciska T; Manning, Peter; Hamonts, Kelly; Kattge, Jens; Boenisch, Gerhard; Singh, Brajesh K; Bardgett, Richard D

2018-04-19

We lack strong empirical evidence for links between plant attributes (plant community attributes and functional traits) and the distribution of soil microbial communities at large spatial scales. Using datasets from two contrasting regions and ecosystem types in Australia and England, we report that aboveground plant community attributes, such as diversity (species richness) and cover, and functional traits can predict a unique portion of the variation in the diversity (number of phylotypes) and community composition of soil bacteria and fungi that cannot be explained by soil abiotic properties and climate. We further identify the relative importance and evaluate the potential direct and indirect effects of climate, soil properties and plant attributes in regulating the diversity and community composition of soil microbial communities. Finally, we deliver a list of examples of common taxa from Australia and England that are strongly related to specific plant traits, such as specific leaf area index, leaf nitrogen and nitrogen fixation. Together, our work provides new evidence that plant attributes, especially plant functional traits, can predict the distribution of soil microbial communities at the regional scale and across two hemispheres. © 2018 The Authors. New Phytologist © 2018 New Phytologist Trust.

Soil microbial community response to land use change in an agricultural landscape of western Kenya.

PubMed

Bossio, D A; Girvan, M S; Verchot, L; Bullimore, J; Borelli, T; Albrecht, A; Scow, K M; Ball, A S; Pretty, J N; Osborn, A M

2005-01-01

Tropical agroecosystems are subject to degradation processes such as losses in soil carbon, nutrient depletion, and reduced water holding capacity that occur rapidly resulting in a reduction in soil fertility that can be difficult to reverse. In this research, a polyphasic methodology has been used to investigate changes in microbial community structure and function in a series of tropical soils in western Kenya. These soils have different land usage with both wooded and agricultural soils at Kakamega and Ochinga, whereas at Ochinga, Leuro, Teso, and Ugunja a replicated field experiment compared traditional continuous maize cropping against an improved N-fixing fallow system. For all sites, principal component analysis of 16S rRNA gene denaturing gradient gel electrophoresis (DGGE) profiles revealed that soil type was the key determinant of total bacterial community structure, with secondary variation found between wooded and agricultural soils. Similarly, phospholipid fatty acid (PLFA) analysis also separated wooded from agricultural soils, primarily on the basis of higher abundance of monounsaturated fatty acids, anteiso- and iso-branched fatty acids, and methyl-branched fatty acids in the wooded soils. At Kakamega and Ochinga wooded soils had between five 5 and 10-fold higher levels of soil carbon and microbial biomass carbon than agricultural soils from the same location, whereas total enzyme activities were also lower in the agricultural sites. Soils with woody vegetation had a lower percentage of phosphatase activity and higher cellulase and chitinase activities than the agricultural soils. BIOLOG analysis showed woodland soils to have the greatest substrate diversity. Throughout the study the two functional indicators (enzyme activity and BIOLOG), however, showed lower specificity with respect to soil type and land usage than did the compositional indicators (DGGE and PLFA). In the field experiment comparing two types of maize cropping, both the maize yields and total microbial biomass were found to increase with the fallow system. Moreover, 16S rRNA gene and PLFA analyses revealed shifts in the total microbial community in response to the different management regimes, indicating that deliberate management of soils can have considerable impact on microbial community structure and function in tropical soils.

Stress differentially impacts reserve pools and root exudation: implications for ecosystem functioning and carbon balance

NASA Astrophysics Data System (ADS)

Landhäusser, Simon; Karst, Justine; Wiley, Erin; Gaster, Jacob

2016-04-01

Environmental stress can influence carbon assimilation and the accumulation and distribution of carbon between growth, reserves, and exudation; however, it is unclear how these processes vary by different stress types. Partitioning of carbon to growth and reserves in plants might also vary between different organs. Roots reserves are of particular interest as they link the plant with the soil carbon cycle through exudation. Simple models of diffusion across concentration gradients predict the more C reserves in roots, the more C should be exuded from roots. However, the mechanisms underlying the accumulation and loss of C from roots may differ depending on the stress experienced by the plants. In a controlled study we tested whether different types of stresses (shade, cold soil, and drought) have differential effects on the distribution, abundance, and form (sugar vs. starch) of carbohydrates in seedlings, and whether these changes alone could explain differences in root exudation between stress types. Non-structural carbohydrate (NSC) concentration and pool sizes varied by stress type and between organs. Mass-specific C exudation increased with fine root sugar concentration; however, stress type affected exudation independently of reserve concentration. Seedlings exposed to cold soils exuded the most C on a per root mass basis followed by shade and drought. Through 13C labeling, we also found that depending on the stress type, aspen seedlings may be less able to control the loss of C to the soil compared with unstressed seedlings, resulting in more C leaked to the rhizosphere. The loss of C beyond that predicted by simple concentration gradients might have important implications for ecosystem functioning and carbon balance. If stressed plants lose proportionally more carbon to the soil, existing interactions between plants and soils may decouple under stress, and may include unexpected C fluxes between trees, soils and the atmosphere with a changing climate.

Diversity of Archaea in Brazilian savanna soils.

PubMed

Catão, E; Castro, A P; Barreto, C C; Krüger, R H; Kyaw, C M

2013-07-01

Although the richness of Bacteria and Fungi in Cerrado' soils has been reported, here we report, for the first time, the archaeal community in Cerrado's soils. DNA extracted from soil of two distinct vegetation types, a dense subtype of sensu strict (cerrado denso) and riverbank forest (mata de galeria), was used to amplify Archaea-specific 16S rRNA gene. All of the fragments sequenced were classified as Archaea into the phylum Thaumarchaeota, predominantly affiliated to groups I.1b and I.1c. Sequences affiliated to the group I.1a were found only in the soil from riverbank forest. Soils from 'cerrado denso' had greater Archaea richness than those from 'mata de galeria' based on the richness indexes and on the rarefaction curve. β-Diversity analysis showed significant differences between the sequences from the two soil areas studied because of their different thaumarchaeal group composition. These results provide information about the third domain of life from Cerrado soils.

Effect of land use change on soil properties and functions

NASA Astrophysics Data System (ADS)

Tonutare, Tonu; Kõlli, Raimo; Köster, Tiina; Rannik, Kaire; Szajdak, Lech; Shanskiy, Merrit

2014-05-01

For good base of sustainable land management and ecologically sound protection of soils are researches on soil properties and functioning. Ecosystem approach to soil properties and functioning is equally important in both natural and cultivated land use conditions. Comparative analysis of natural and agro-ecosystems formed on similar soil types enables to elucidate principal changes caused by land use change (LUC) and to elaborate the best land use practices for local pedo-ecological conditions. Taken for actual analysis mineral soils' catena - rendzina → brown soils → pseudopodzolic soils → gley-podzols - represent ca 1/3 of total area of Estonian normal mineral soils. All soils of this catena differ substantially each from other by calcareousness, acidity, nutrition conditions, fabric and humus cover type. This catena (representative to Estonian pedo-ecological conditions) starts with drought-prone calcareous soils. Brown (distributed in northern and central Estonia) and pseudopodzolic soils (in southern Estonia) are the most broadly acknowledged for agricultural use medium-textured high-quality automorphic soils. Dispersedly distributed gley-podzols are permanently wet and strongly acid, low-productivity sandy soils. In presentation four complex functions of soils are treated: (1) being a suitable soil environment for plant cover productivity (expressed by annual increment, Mg ha-1 yr-1); (2) forming adequate conditions for decomposition, transformation and conversion of fresh falling litter (characterized by humus cover type); (3) deposition of humus, individual organic compounds, plant nutrition elements, air and water, and (4) forming (bio)chemically variegated active space for soil type specific edaphon. Capacity of soil cover as depositor (3) depends on it thickness, texture, calcareousness and moisture conditions. Biological activity of soil (4) is determined by fresh organic matter influx, quality and quantity of biochemical substances and humus, and pedo-ecological conditions. LUC from natural to arable is accompanied by different regulations: (1) regular restoration of plant available nutrition elements' stocks in soil, (2) regulation (if needed) of water regime of gleyed and gley soils, (3) optimizing of soil actual acidity by liming, and (4) forming a suitable for crops seed bed instead of natural epipedon. Principal changes are occurred in fabric and agrochemical properties of topsoil and in soil functioning. The connected with LUC changes in soil functioning are: (1) increase of openness level of chemical elements cycling and nutrition elements concentration in phytomass, and (2) decrease of total phytomass, species diversity, amount of annual falling litter and content of mortmass in soil cover. These changes lead to decreasing of biological control on soil resources, flux of energy and substances to soil processes, and volume of cycling. At the same time the intensity of organic matter decomposition and outflow of nutrition elements are increased. All these changes are resulted by alteration of food chains and exhausting of nutrition elements' stocks. The changes in soil functioning (decrease or increase of productivity) depend much on soil type. The aspects of functioning, which do not changed with LUC are chemical-textural potential of soil cover and functioning character of subsoil. The sound matching of soil and plant cover is of decisive importance for sustainable functioning of ecosystem and in attaining a good environmental status of the area.

Organic Phosphorus Characterisation in Agricultural Soils by Enzyme Addition Assays

NASA Astrophysics Data System (ADS)

Jarosch, Klaus; Frossard, Emmanuel; Bünemann, Else K.

2013-04-01

Phosphorus (P) is a non-renewable resource and it is a building block of many molecules indispensable for life. Up to 80 per cent of total soil P can be in organic form. Hydrolysability and thereby availability to plants and microorganisms differ strongly among the multitude of chemical forms of soil organic P. A recent approach to characterise organic P classes is the addition of specific enzymes which hydrolyse organic P to inorganic orthophosphate, making it detectable by colorimetry. Based on the substrate specificity of the added enzymes, conclusions about the hydrolysed forms of organic P can then be made. The aim of this study was to determine the applicability of enzyme addition assays for the characterisation of organic P species in soil:water suspensions of soils with differing properties. To this end, ten different soil samples originating from four continents, with variable pH (in water) values (4.2-8.0), land management (grassland or cropped land) and P fertilization intensity were analysed. Three different enzymes were used (acid phosphatase, nuclease and phytase). Acid phosphatase alone or in combination with nuclease was applied to determine the content of P in simple monoesters (monoester-like P) and P in DNA (DNA-like P), while P hydrolysed from myo-inositol hexakisphosphate (Ins6P-like P) was calculated from P release after incubation with phytase minus P release by acid phosphatase. To reduce sorption of inorganic P on soil particles of the suspension, especially in highly weathered soils, soil specific EDTA additions were determined in extensive pre-tests. The results of these pre-tests showed that recoveries of at least 30 per cent could be achieved in all soils. Thus, detection of even small organic P pools, such as DNA-like P, was possible in all soils if a suitable EDTA concentration was chosen. The enzyme addition assays provided information about the hydrolysable quantities of the different classes of soil organic P compounds as affected by various soil specific variables. Thus, the characterisation of soil organic P by enzyme addition assays was further developed and shown to be applicable on a very wide range of soil types. The method also bears the potential for describing translocation processes of dissolved organic P species in soil - aquifer systems. Key words: soil organic phosphorus characterisation, enzyme additions, dissolved organic P

Description, calibration and sensitivity analysis of the local ecosystem submodel of a global model of carbon and nitrogen cycling and the water balance in the terrestrial biosphere

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kercher, J.R.; Chambers, J.Q.

1995-10-01

We have developed a geographically-distributed ecosystem model for the carbon, nitrogen, and water dynamics of the terrestrial biosphere TERRA. The local ecosystem model of TERRA consists of coupled, modified versions of TEM and DAYTRANS. The ecosystem model in each grid cell calculates water fluxes of evaporation, transpiration, and runoff; carbon fluxes of gross primary productivity, litterfall, and plant and soil respiration; and nitrogen fluxes of vegetation uptake, litterfall, mineralization, immobilization, and system loss. The state variables are soil water content; carbon in live vegetation; carbon in soil; nitrogen in live vegetation; organic nitrogen in soil and fitter; available inorganic nitrogenmore » aggregating nitrites, nitrates, and ammonia; and a variable for allocation. Carbon and nitrogen dynamics are calibrated to specific sites in 17 vegetation types. Eight parameters are determined during calibration for each of the 17 vegetation types. At calibration, the annual average values of carbon in vegetation C, show site differences that derive from the vegetation-type specific parameters and intersite variation in climate and soils. From calibration, we recover the average C{sub v} of forests, woodlands, savannas, grasslands, shrublands, and tundra that were used to develop the model initially. The timing of the phases of the annual variation is driven by temperature and light in the high latitude and moist temperate zones. The dry temperate zones are driven by temperature, precipitation, and light. In the tropics, precipitation is the key variable in annual variation. The seasonal responses are even more clearly demonstrated in net primary production and show the same controlling factors.« less

Identification of growth stage molecular markers in Trichoderma sp. 'atroviride type B' and their potential application in monitoring fungal growth and development in soil.

PubMed

Mendoza-Mendoza, Artemio; Steyaert, Johanna; Nieto-Jacobo, Maria Fernanda; Holyoake, Andrew; Braithwaite, Mark; Stewart, Alison

2015-11-01

Several members of the genus Trichoderma are biocontrol agents of soil-borne fungal plant pathogens. The effectiveness of biocontrol agents depends heavily on how they perform in the complex field environment. Therefore, the ability to monitor and track Trichoderma within the environment is essential to understanding biocontrol efficacy. The objectives of this work were to: (a) identify key genes involved in Trichoderma sp. 'atroviride type B' morphogenesis; (b) develop a robust RNA isolation method from soil; and (c) develop molecular marker assays for characterizing morphogenesis whilst in the soil environment. Four cDNA libraries corresponding to conidia, germination, vegetative growth and conidiogenesis were created, and the genes identified by sequencing. Stage specificity of the different genes was confirmed by either Northern blot or quantitative reverse-transcriptase PCR (qRT-PCR) analysis using RNA from the four stages. con10, a conidial-specific gene, was observed in conidia, as well as one gene also involved in subsequent stages of germination (L-lactate/malate dehydrogenase encoding gene). The germination stage revealed high expression rates of genes involved in amino acid and protein biosynthesis, while in the vegetative-growth stage, genes involved in differentiation, including the mitogen-activated protein kinase kinase similar to Kpp7 from Ustilago maydis and the orthologue to stuA from Aspergillus nidulans, were preferentially expressed. Genes involved in cell-wall synthesis were expressed during conidiogenesis. We standardized total RNA isolation from Trichoderma sp. 'atroviride type B' growing in soil and then examined the expression profiles of selected genes using qRT-PCR. The results suggested that the relative expression patterns were cyclic and not accumulative.

7 CFR 1437.309 - Turfgrass sod.

Code of Federal Regulations, 2011 CFR

2011-01-01

... stratum of soil bound by mature grass and plant roots into a thick mat produced in commercial quantities for sale. (b) Specific species, types or varieties of grass intended for turfgrass sod will be...

7 CFR 1437.309 - Turfgrass sod.

Code of Federal Regulations, 2010 CFR

2010-01-01

... stratum of soil bound by mature grass and plant roots into a thick mat produced in commercial quantities for sale. (b) Specific species, types or varieties of grass intended for turfgrass sod will be...

Lung Epithelial Healing: A Modified Seed and Soil Concept

PubMed Central

Brechbuhl, Heather M.; Smith, Mary Kathryn; Smith, Russell W.; Ghosh, Moumita

2012-01-01

Airway epithelial healing is defined as restoration of health or soundness; to cure. Our research indicates that two types of progenitor cells participate in this process: the tissue-specific stem cell (TSC) and the facultative basal progenitor (FBP). The TSC restores the epithelium to its normal structure and function. Thus, the TSC regenerates the epithelium. In contrast, the FBP-derived epithelium is characterized by regions of cellular hyperplasia and hypoplasia. Since the FBP-derived epithelium deviates from normal, we term the FBP-mediated process repair. Our work indicates that the TSC responds to signals from other epithelial cells, including the FBP. These signals instruct the TSC to proliferate or to select one of several differentiation pathways. We interpret these data in the context of Stephen Padget’s “seed and soil” paradigm. Therein, Padget explained that metastasis of a tumor, the seed, to a specific site, the soil, was determined by the growth and differentiation requirements of the tumor cell. By extending the seed and soil paradigm to airway epithelial healing, we suggest that proliferation and differentiation of the TSC, the seed, is determined by its interactions with other cell types, the soil. Based on this concept, we provide a set of suggestions for development of cell-based therapies that are directed toward chronic airways disease. PMID:22550238

Advanced solvent based methods for molecular characterization of soil organic matter by high-resolution mass spectrometry

DOE Office of Scientific and Technical Information (OSTI.GOV)

Tfaily, Malak M.; Chu, Rosalie K.; Tolic, Nikola

2015-05-19

Soil organic matter (SOM) a complex, heterogeneous mixture of above and belowground plant litter and animal and microbial residues at various degrees of decomposition, is a key reservoir for carbon (C) and nutrient biogeochemical cycling in soil based ecosystems. A limited understanding of the molecular composition of SOM limits the ability to routinely decipher chemical processes within soil and predict accurately how terrestrial carbon fluxes will response to changing climatic conditions and land use. To elucidate the molecular-level structure of SOM, we selectively extracted a broad range of intact SOM compounds by a combination of different organic solvents from soilsmore » with a wide range of C content. Our use of Electrospray ionization (ESI) coupled with Fourier transform ion cyclotron resonance mass spectrometry (FTICR MS) and a suite of solvents with varying polarity significantly expands the inventory of the types of organic molecules present in soils. Specifically, we found that hexane is selective for lipid-like compounds with very low O:C ratios; water was selective for carbohydrates with high O:C ratios; acetonitrile preferentially extracts lignin, condensed structures, and tannin poly phenolic compounds with O:C > 0.5; methanol has higher selectivity towards compounds characterized with low O:C < 0.5; and hexane, MeOH, ACN and water solvents increase the number and types of organic molecules extracted from soil for a broader range of chemically diverse soil types. Our study of SOM molecules by ESI-FTICR MS revealed new insight into the molecular-level complexity of organics contained in soils.« less

Urea Amendment Decreases Microbial Diversity and Selects for Specific Nitrifying Strains in Eight Contrasting Agricultural Soils

PubMed Central

Staley, Christopher; Breuillin-Sessoms, Florence; Wang, Ping; Kaiser, Thomas; Venterea, Rodney T.; Sadowsky, Michael J.

2018-01-01

Application of nitrogen (N) fertilizers, predominantly as urea, is a major source of reactive N in the environment, with wide ranging effects including increased greenhouse gas accumulation in the atmosphere and aquatic eutrophication. The soil microbial community is the principal driver of soil N cycling; thus, improved understanding of microbial community responses to urea addition has widespread implications. We used next-generation amplicon sequencing of the 16S rRNA gene to characterize bacterial and archaeal communities in eight contrasting agricultural soil types amended with 0, 100, or 500 μg N g-1 of urea and incubated for 21 days. We hypothesized that urea amendment would have common, direct effects on the abundance and diversity of members of the microbial community associated with nitrification, across all soils, and would further affect the broader heterotrophic community resulting in decreased diversity and variation in abundances of specific taxa. Significant (P < 0.001) differences in bacterial community diversity and composition were observed by site, but amendment with only the greatest urea concentration significantly decreased Shannon indices. Expansion in the abundances of members of the families Microbacteriaceae, Chitinophagaceae, Comamonadaceae, Xanthomonadaceae, and Nitrosomonadaceae were also consistently observed among all soils (linear discriminant analysis score ≥ 3.0). Analysis of nitrifier genera revealed diverse, soil-specific distributions of oligotypes (strains), but few were correlated with nitrification gene abundances that were reported in a previous study. Our results suggest that the majority of the bacterial and archaeal community are likely unassociated with N cycling, but are significantly negatively impacted by urea application. Furthermore, these results reveal that amendment with high concentrations of urea may reduce nitrifier diversity, favoring specific strains, specifically those within the nitrifying genera Nitrobacter, Nitrospira, and Nitrosospira, that may play significant roles related to N cycling in soils receiving intensive urea inputs. PMID:29670600

The stability of clay using mount Sinabung ash with unconfined compression test (uct) value

NASA Astrophysics Data System (ADS)

Puji Hastuty, Ika; Roesyanto; Hutauruk, Ronny; Simanjuntak, Oberlyn

2018-03-01

The soil has a important role as a highway’s embankment material (sub grade). Soil conditions are very different in each location because the scientifically soil is a very complex and varied material and the located on the field is very loose or very soft, so it is not suitable for construction, then the soil should be stabilized. The additive material commonly used for soil stabilization includes cement, lime, fly ash, rice husk ash, and others. This experiment is using the addition of volcanic ash. The purpose of this study was to determine the Index Properties and Compressive Strength maximum value with Unconfined Compression Test due to the addition of volcanic ash as a stabilizing agent along with optimum levels of the addition. The result showed that the original soil sample has Water Content of 14.52%; the Specific Weight of 2.64%; Liquid limit of 48.64% and Plasticity Index of 29.82%. Then, the Compressive Strength value is 1.40 kg/cm2. According to USCS classification, the soil samples categorized as the (CL) type while based on AASHTO classification, the soil samples are including as the type of A-7-6. After the soil is stabilized with a variety of volcanic ash, can be concluded that the maximum value occurs at mixture variation of 11% Volcanic Ash with Unconfined Compressive Strength value of 2.32 kg/cm2.

Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota.

PubMed

Bulgarelli, Davide; Rott, Matthias; Schlaeppi, Klaus; Ver Loren van Themaat, Emiel; Ahmadinejad, Nahal; Assenza, Federica; Rauf, Philipp; Huettel, Bruno; Reinhardt, Richard; Schmelzer, Elmon; Peplies, Joerg; Gloeckner, Frank Oliver; Amann, Rudolf; Eickhorst, Thilo; Schulze-Lefert, Paul

2012-08-02

The plant root defines the interface between a multicellular eukaryote and soil, one of the richest microbial ecosystems on Earth. Notably, soil bacteria are able to multiply inside roots as benign endophytes and modulate plant growth and development, with implications ranging from enhanced crop productivity to phytoremediation. Endophytic colonization represents an apparent paradox of plant innate immunity because plant cells can detect an array of microbe-associated molecular patterns (also known as MAMPs) to initiate immune responses to terminate microbial multiplication. Several studies attempted to describe the structure of bacterial root endophytes; however, different sampling protocols and low-resolution profiling methods make it difficult to infer general principles. Here we describe methodology to characterize and compare soil- and root-inhabiting bacterial communities, which reveals not only a function for metabolically active plant cells but also for inert cell-wall features in the selection of soil bacteria for host colonization. We show that the roots of Arabidopsis thaliana, grown in different natural soils under controlled environmental conditions, are preferentially colonized by Proteobacteria, Bacteroidetes and Actinobacteria, and each bacterial phylum is represented by a dominating class or family. Soil type defines the composition of root-inhabiting bacterial communities and host genotype determines their ribotype profiles to a limited extent. The identification of soil-type-specific members within the root-inhabiting assemblies supports our conclusion that these represent soil-derived root endophytes. Surprisingly, plant cell-wall features of other tested plant species seem to provide a sufficient cue for the assembly of approximately 40% of the Arabidopsis bacterial root-inhabiting microbiota, with a bias for Betaproteobacteria. Thus, this root sub-community may not be Arabidopsis-specific but saprophytic bacteria that would naturally be found on any plant root or plant debris in the tested soils. By contrast, colonization of Arabidopsis roots by members of the Actinobacteria depends on other cues from metabolically active host cells.

Predictive mapping of soil organic carbon in wet cultivated lands using classification-tree based models: the case study of Denmark.

PubMed

Bou Kheir, Rania; Greve, Mogens H; Bøcher, Peder K; Greve, Mette B; Larsen, René; McCloy, Keith

2010-05-01

Soil organic carbon (SOC) is one of the most important carbon stocks globally and has large potential to affect global climate. Distribution patterns of SOC in Denmark constitute a nation-wide baseline for studies on soil carbon changes (with respect to Kyoto protocol). This paper predicts and maps the geographic distribution of SOC across Denmark using remote sensing (RS), geographic information systems (GISs) and decision-tree modeling (un-pruned and pruned classification trees). Seventeen parameters, i.e. parent material, soil type, landscape type, elevation, slope gradient, slope aspect, mean curvature, plan curvature, profile curvature, flow accumulation, specific catchment area, tangent slope, tangent curvature, steady-state wetness index, Normalized Difference Vegetation Index (NDVI), Normalized Difference Wetness Index (NDWI) and Soil Color Index (SCI) were generated to statistically explain SOC field measurements in the area of interest (Denmark). A large number of tree-based classification models (588) were developed using (i) all of the parameters, (ii) all Digital Elevation Model (DEM) parameters only, (iii) the primary DEM parameters only, (iv), the remote sensing (RS) indices only, (v) selected pairs of parameters, (vi) soil type, parent material and landscape type only, and (vii) the parameters having a high impact on SOC distribution in built pruned trees. The best constructed classification tree models (in the number of three) with the lowest misclassification error (ME) and the lowest number of nodes (N) as well are: (i) the tree (T1) combining all of the parameters (ME=29.5%; N=54); (ii) the tree (T2) based on the parent material, soil type and landscape type (ME=31.5%; N=14); and (iii) the tree (T3) constructed using parent material, soil type, landscape type, elevation, tangent slope and SCI (ME=30%; N=39). The produced SOC maps at 1:50,000 cartographic scale using these trees are highly matching with coincidence values equal to 90.5% (Map T1/Map T2), 95% (Map T1/Map T3) and 91% (Map T2/Map T3). The overall accuracies of these maps once compared with field observations were estimated to be 69.54% (Map T1), 68.87% (Map T2) and 69.41% (Map T3). The proposed tree models are relatively simple, and may be also applied to other areas. Copyright 2010 Elsevier Ltd. All rights reserved.

Land use and soil type determine the presence of the pathogen Burkholderia pseudomallei in tropical rivers.

PubMed

Ribolzi, Olivier; Rochelle-Newall, Emma; Dittrich, Sabine; Auda, Yves; Newton, Paul N; Rattanavong, Sayaphet; Knappik, Michael; Soulileuth, Bounsamai; Sengtaheuanghoung, Oloth; Dance, David A B; Pierret, Alain

2016-04-01

Burkholderia pseudomallei is the bacterium that causes melioidosis in humans. While B. pseudomallei is known to be endemic in South East Asia (SEA), the occurrence of the disease in other parts of the tropics points towards a potentially large global distribution. We investigated the environmental factors that influence the presence (and absence) of B. pseudomallei in a tropical watershed in SEA. Our main objective was to determine whether there is a link between the presence of the organism in the hydrographic network and the upstream soil and land-use type. The presence of B. pseudomallei was determined using a specific quantitative real-time PCR assay following enrichment culture. Land use, soil, geomorphology, and environmental data were then analyzed using partial least squares discriminant analysis (PLSDA) to compare the B. pseudomallei positive and negative sites. Soil type in the surrounding catchment and turbidity had a strong positive influence on the presence (acrisols and luvisols) or absence (ferralsols) of B. pseudomallei. Given the strong apparent links between soil characteristics, water turbidity, and the presence/absence of B. pseudomallei, actions to raise public awareness about factors increasing the risk of exposure should be undertaken in order to reduce the incidence of melioidosis in regions of endemicity.

Advanced solvent based methods for molecular characterization of soil organic matter by high-resolution mass spectrometry.

PubMed

Tfaily, Malak M; Chu, Rosalie K; Tolić, Nikola; Roscioli, Kristyn M; Anderton, Christopher R; Paša-Tolić, Ljiljana; Robinson, Errol W; Hess, Nancy J

2015-01-01

Soil organic matter (SOM), a complex, heterogeneous mixture of above and belowground plant litter and animal and microbial residues at various degrees of decomposition, is a key reservoir for carbon (C) and nutrient biogeochemical cycling in soil based ecosystems. A limited understanding of the molecular composition of SOM limits the ability to routinely decipher chemical processes within soil and accurately predict how terrestrial carbon fluxes will respond to changing climatic conditions and land use. To elucidate the molecular-level structure of SOM, we selectively extracted a broad range of intact SOM compounds by a combination of different organic solvents from soils with a wide range of C content. Our use of electrospray ionization (ESI) coupled with Fourier transform ion cyclotron resonance mass spectrometry (FTICR MS) and a suite of solvents with varying polarity significantly expands the inventory of the types of organic molecules present in soils. Specifically, we found that hexane is selective for lipid-like compounds with very low O/C ratios (<0.1); water (H2O) was selective for carbohydrates with high O/C ratios; acetonitrile (ACN) preferentially extracts lignin, condensed structures, and tannin polyphenolic compounds with O/C > 0.5; methanol (MeOH) has higher selectivity toward compounds characterized with low O/C < 0.5; and hexane, MeOH, ACN, and H2O solvents increase the number and types of organic molecules extracted from soil for a broader range of chemically diverse soil types. Our study of SOM molecules by ESI FTICR MS revealed new insight into the molecular-level complexity of organics contained in soils. We present the first comparative study of the molecular composition of SOM from different ecosystems using ultra high-resolution mass spectrometry.

Taxon-specific metagenomics of Trichoderma reveals a narrow community of opportunistic species that regulate each other’s development

PubMed Central

Friedl, Martina A.

2012-01-01

In this paper, we report on the in situ diversity of the mycotrophic fungus Trichoderma (teleomorph Hypocrea, Ascomycota, Dikarya) revealed by a taxon-specific metagenomic approach. We designed a set of genus-specific internal transcribed spacer (ITS)1 and ITS2 rRNA primers and constructed a clone library containing 411 molecular operational taxonomic units (MOTUs). The overall species composition in the soil of the two distinct ecosystems in the Danube floodplain consisted of 15 known species and two potentially novel taxa. The latter taxa accounted for only 1.5 % of all MOTUs, suggesting that almost no hidden or uncultivable Hypocrea/Trichoderma species are present at least in these temperate forest soils. The species were unevenly distributed in vertical soil profiles although no universal factors controlling the distribution of all of them (chemical soil properties, vegetation type and affinity to rhizosphere) were revealed. In vitro experiments simulating infrageneric interactions between the pairs of species that were detected in the same soil horizon showed a broad spectrum of reactions from very strong competition over neutral coexistence to the pronounced synergism. Our data suggest that only a relatively small portion of Hypocrea/Trichoderma species is adapted to soil as a habitat and that the interaction between these species should be considered in a screening for Hypocrea/Trichoderma as an agent(s) of biological control of pests. PMID:22075025

Soil organic matter degradation and enzymatic profiles of intertidal and subaqueous soils

NASA Astrophysics Data System (ADS)

Ferronato, Chiara; Marinari, Sara; Bello, Diana; Vianello, Gilmo; Trasar-Cepeda, Carmen; Vittori Antisari, Livia

2017-04-01

The interest on intertidal and subaqueous soils has recently arisen because of the climate changes forecasts. The preservation of these habitats represents an important challenge for the future of humanity, because these systems represent an important global C sink since soil organic matter (SOM) on intertidal and subaqueous soils undergoes very slow degradation rates due to oxygen limitation. Publications on SOM cycle in saltmarshes are very scarce because of the difficulties involved on those studies i.e. the interaction of many abiotic and biotic factors (e.g., redox changes, water and bio-turbation processes, etc) and stressors (e.g., salinity and anoxia). However, saltmarshes constitute an unique natural system to observe the influence of anoxic conditions on SOM degradation, because the tide fluctuations on the soil surface allow the formation of provisionally or permanently submerged soils. With the aim to investigate the quality of SOM in subaqueous soils, triplicates of subaqueous soils (SASs), intertidal soils (ITSs) and terrestrial soils (TESs) were collected in the saltmarshes of the Baiona Lagoon (Northern Italy) and classified according to their pedogenetic horizons. The SOM quality on each soil horizon was investigated by quantifying SOM, total and water-soluble organic carbon (TOC, WSC) and microbial biomass carbon (MBC). Given the contribution of soil enzymes to the degradation of SOM, some enzymatic assays were also performed. Thereafter, soil classification and humus morpho-functional classification were used to join together similar soil profiles to facilitate the description and discussion of results. Soils were ranked as Aquent or Wassent Entisols, with an A/AC/C pedosequence. SOM, TOC and MBC were statistically higher in A than in AC and C horizons. Among the A horizons, ITSs were those showing the highest values for these parameters (11% TOC, 1.6 mg kg-1 MBC, 0.9 mg kg-1 WSC). These results, combined with the morpho-functional classification of epipedons, reflect the influence of the type of annual biomass depositions on ITSs (i.e. Salicornia europaea), but also the important role of the tide oscillation that promotes the continuous alternation of red-ox exchanges and thus fasten the organic matter turnover in ITSs. On these pedons, invertase was the most effective enzymes (11.6 μmol glucose g-1h-1). Moreover, in SASs and ITSs, most of the activities linked to the degradation of exoskeletons and fungi (e.g. chitinase) increase along the soil profile, probably due to the disrupting effect of water on the soil and to the type of SOM in saltmarshes soils. By considering the specific activity (enzymatic activity/TOC content), data showed how SASs, ITSs and TESs had different oxidoreductases and hydrolases trends, suggesting a different path and effectiveness of SOM degradation, which probably depends both on the soil hydric regime, and on the different type of organic compounds. A particular increase of catalase and invertase specific activities along the soil profiles, suggests the presence of microaerophilic environment in some saturated AC and C sandy horizons but generally, it was observed a gradual decrease of biochemical alteration of the SOM by enzymatic activities along the soil profile due to the progressive restriction of the edaphic conditions.

Regional Impacts of Woodland Expansion on Nitrogen Oxide Emissions from Texas Savannahs: Combining Field, Modeling and Remote Sensing Approaches

NASA Technical Reports Server (NTRS)

Asner, Gregory P. (Principal Investigator)

2003-01-01

Woody encroachment has contributed to documented changes world-wide and locally in the southwestern U.S. Specifically, in North Texas rangelands encroaching mesquite (Prosopis glandulosa var. glandulosa) a known N-fixing species has caused changes in aboveground biomass. While measurements of aboveground plant production are relatively common, measures of soil N availability are scarce and vary widely. N trace gas emissions (nitric and nitrous oxide) flom soils reflect patterns in current N cycling rates and availability as they are stimulated by inputs of organic and inorganic N. Quantification of N oxide emissions from savanna soils may depend upon the spatial distribution of woody plant canopies, and specifically upon the changes in N availability and cycling and subsequent N trace gas production as influenced by the shift from herbaceous to woody vegetation type. The main goal of this research was to determine whether remotely sensible parameters of vegetation structure and soil type could be used to quantify biogeochemical changes in N at local, landscape and regional scales. To accomplish this goal, field-based measurements of N trace gases were carried out between 2000-2001, encompassing the acquisition of imaging spectrometer data from the NASA Airborne Visible and Infrared Imaging Spectrometer (AVIRIS) on September 29, 2001. Both biotic (vegetation type and soil organic N) and abiotic (soil type, soil pH, temperature, soil moisture, and soil inorganic N) controls were analyzed for their contributions to observed spatial and temporal variation in soil N gas fluxes. These plot level studies were used to develop relationships between spatially extensive, field-based measurements of N oxide fluxes and remotely sensible aboveground vegetation and soil properties, and to evaluate the short-term controls over N oxide emissions through intensive field wetting experiments. The relationship between N oxide emissions, remotely-sensed parameters (vegetation cover, and soil type), and physical controls (soil moisture, and temperature) permitted the regional scale quantification of soil N oxides emissions. Landscape scale analysis linking N oxide emissions with cover change revealed an alleviation from N limitation following mesquite invasion. This study demonstrated the advantage of using N trace gases as a measure of ecosystem N availability combined with remote sensing to characterize the spatial heterogeneity in ecosystem parameters at a scale commensurate with field-based measurements of these properties. Woody vegetation encroachment provided an opportunity to capitalize on detection of the remotely-sensible parameter of woody cover as it relates to belowground biogeochemical processes that determine N trace gas production. The first spatially-explicit estimates of NO flux were calculated based on Prosopis fractional cover derived from high resolution remote sensing estimates of fractional woody cover (< 4 m) for a 120 sq km region of North Texas. An assessment of both N stocks and fluxes from the study revealed an alleviation of N limitation at this site experiencing recent woody encroachment. Many arid and semi-arid regions of the world are experiencing woody invasions, often of N-fixing species. The issue of woody encroachment is in the center of an ecological and political debate. Improving the links between biogeochemical processes and remote sensing of ecosystem properties will improve our understanding of biogeochemical processes at the regional scale, thus providing a means to address issues of land-use and land-cover change.

Determination and validation of soil thresholds for cadmium based on food quality standard and health risk assessment.

PubMed

Ding, Changfeng; Ma, Yibing; Li, Xiaogang; Zhang, Taolin; Wang, Xingxiang

2018-04-01

Cadmium (Cd) is an environmental toxicant with high rates of soil-plant transfer. It is essential to establish an accurate soil threshold for the implementation of soil management practices. This study takes root vegetable as an example to derive soil thresholds for Cd based on the food quality standard as well as health risk assessment using species sensitivity distribution (SSD). A soil type-specific bioconcentration factor (BCF, ratio of Cd concentration in plant to that in soil) generated from soil with a proper Cd concentration gradient was calculated and applied in the derivation of soil thresholds instead of a generic BCF value to minimize the uncertainty. The sensitivity variations of twelve root vegetable cultivars for accumulating soil Cd and the empirical soil-plant transfer model were investigated and developed in greenhouse experiments. After normalization, the hazardous concentrations from the fifth percentile of the distribution based on added Cd (HC5 add ) were calculated from the SSD curves fitted by Burr Type III distribution. The derived soil thresholds were presented as continuous or scenario criteria depending on the combination of soil pH and organic carbon content. The soil thresholds based on food quality standard were on average 0.7-fold of those based on health risk assessment, and were further validated to be reliable using independent data from field survey and published articles. The results suggested that deriving soil thresholds for Cd using SSD method is robust and also applicable to other crops as well as other trace elements that have the potential to cause health risk issues. Copyright © 2017 Elsevier B.V. All rights reserved.

Large-scale habitat associations of four desert anurans in Big Bend National Park, Texas

USGS Publications Warehouse

Dayton, Gage H.; Jung, R.E.; Droege, S.

2004-01-01

We used night driving to examine large scale habitat associations of four common desert anurans in Big Bend National Park, Texas. We examined association of soil types and vegetation communities with abundance of Couch's Spadefoots (Scaphiopus couchii), Red-spotted Toads (Bufo punctatus), Texas Toads (Bufo speciosus), and Western Green Toads (Bufo debilis). All four species were disproportionately associated with frequently inundated soils that are relatively high in clay content. Bufo punctatus was associated with rocky soil types more frequently than the other three species. Association between all four species and vegetation types was disproportionate in relation to availability. Bufo debilis and Bufo punctatus were associated with creosote and mixed scrub vegetation. Bufo speciosus and Scaphiopus couchii were associated with mesquite scrub vegetation. Bufo debilis, Scaphiopus couchii, and B. speciosus were more tightly associated with specific habitat types, whereas B. punctatus exhibited a broader distribution across the habitat categories. Examining associations between large-scale habitat categories and species abundance is an important first step in understanding factors that influence species distributions and presence-absence across the landscape.

Distribution of global fallouts cesium-137 in taiga and tundra catenae at the Ob River basin

NASA Astrophysics Data System (ADS)

Semenkov, I. N.; Usacheva, A. A.; Miroshnikov, A. Yu.

2015-03-01

The classification of soil catenae at the Ob River basin is developed and applied. This classification reflects the diverse geochemical conditions that led to the formation of certain soil bodies, their combinations and the migration fields of chemical elements. The soil and geochemical diversity of the Ob River basin catenae was analyzed. The vertical and lateral distribution of global fallouts cesium-137 was studied using the example of the four most common catenae types in Western Siberia tundra and taiga. In landscapes of dwarf birches and dark coniferous forests on gleysols, cryosols, podzols, and cryic-stagnosols, the highest 137Cs activity density and specific activity are characteristic of the upper soil layer of over 30% ash, while the moss-grass-shrub cover is characterized by low 137Cs activity density and specific activity. In landscapes of dwarf birches and pine woods on podzols, the maximum specific activity of cesium-137 is typical for moss-grass-shrub cover, while the maximum reserves are concentrated in the upper soil layer of over 30% ash. Bog landscapes and moss-grass-shrub cover are characterized by a minimum activity of 137Cs, and its reserves in soil generally decrease exponentially with depth. The cesium-137 penetration depth increases in oligotrophic histosols from northern to middle taiga landscapes from 10-15 to 40 cm. 137Cs is accumulated in oligotrophic histosols for increases in pH from 3.3 to 4.0 and in concretionary interlayers of pisoplinthic-cryic-histic-stagnosols. Cryogenic movement, on the one hand, leads to burying organic layers enriched in 137Cs and, on the other hand, to deducing specific activity when mixed with low-active material from lower soil layers.

Independent data validation of an in vitro method for ...

EPA Pesticide Factsheets

In vitro bioaccessibility assays (IVBA) estimate arsenic (As) relative bioavailability (RBA) in contaminated soils to improve the accuracy of site-specific human exposure assessments and risk calculations. For an IVBA assay to gain acceptance for use in risk assessment, it must be shown to reliably predict in vivo RBA that is determined in an established animal model. Previous studies correlating soil As IVBA with RBA have been limited by the use of few soil types as the source of As. Furthermore, the predictive value of As IVBA assays has not been validated using an independent set of As-contaminated soils. Therefore, the current study was undertaken to develop a robust linear model to predict As RBA in mice using an IVBA assay and to independently validate the predictive capability of this assay using a unique set of As-contaminated soils. Thirty-six As-contaminated soils varying in soil type, As contaminant source, and As concentration were included in this study, with 27 soils used for initial model development and nine soils used for independent model validation. The initial model reliably predicted As RBA values in the independent data set, with a mean As RBA prediction error of 5.3% (range 2.4 to 8.4%). Following validation, all 36 soils were used for final model development, resulting in a linear model with the equation: RBA = 0.59 * IVBA + 9.8 and R2 of 0.78. The in vivo-in vitro correlation and independent data validation presented here provide

Genotype, soil type, and locale effects on reciprocal transplant vigor, endophyte growth, and microbial functional diversity of a narrow sagebrush hybrid zone in Salt Creek Canyon, Utah

USGS Publications Warehouse

Miglia, K.J.; McArthur, E.D.; Redman, R.S.; Rodriguez, R.J.; Zak, J.C.; Freeman, D.C.

2007-01-01

When addressing the nature of ecological adaptation and environmental factors limiting population ranges and contributing to speciation, it is important to consider not only the plant's genotype and its response to the environment, but also any close interactions that it has with other organisms, specifically, symbiotic microorganisms. To investigate this, soils and seedlings were reciprocally transplanted into common gardens of the big sagebrush hybrid zone in Salt Creek Canyon, Utah, to determine location and edaphic effects on the fitness of parental and hybrid plants. Endophytic symbionts and functional microbial diversity of indigenous and transplanted soils and sagebrush plants were also examined. Strong selection occurred against the parental genotypes in the middle hybrid zone garden in middle hybrid zone soil; F1 hybrids had the highest fitness under these conditions. Neither of the parental genotypes had superior fitness in their indigenous soils and habitats; rather F1 hybrids with the nonindigenous maternal parent were superiorly fit. Significant garden-by-soil type interactions indicate adaptation of both plant and soil microorganisms to their indigenous soils and habitats, most notably in the middle hybrid zone garden in middle hybrid zone soil. Contrasting performances of F1 hybrids suggest asymmetrical gene flow with mountain, rather than basin, big sagebrush acting as the maternal parent. We showed that the microbial community impacted the performance of parental and hybrid plants in different soils, likely limiting the ranges of the different genotypes.

Chromium speciation, bioavailability, uptake, toxicity and detoxification in soil-plant system: A review.

PubMed

Shahid, Muhammad; Shamshad, Saliha; Rafiq, Marina; Khalid, Sana; Bibi, Irshad; Niazi, Nabeel Khan; Dumat, Camille; Rashid, Muhammad Imtiaz

2017-07-01

Chromium (Cr) is a potentially toxic heavy metal which does not have any essential metabolic function in plants. Various past and recent studies highlight the biogeochemistry of Cr in the soil-plant system. This review traces a plausible link among Cr speciation, bioavailability, phytouptake, phytotoxicity and detoxification based on available data, especially published from 2010 to 2016. Chromium occurs in different chemical forms (primarily as chromite (Cr(III)) and chromate (Cr(VI)) in soil which vary markedly in term of their biogeochemical behavior. Chromium behavior in soil, its soil-plant transfer and accumulation in different plant parts vary with its chemical form, plant type and soil physico-chemical properties. Soil microbial community plays a key role in governing Cr speciation and behavior in soil. Chromium does not have any specific transporter for its uptake by plants and it primarily enters the plants through specific and non-specific channels of essential ions. Chromium accumulates predominantly in plant root tissues with very limited translocation to shoots. Inside plants, Cr provokes numerous deleterious effects to several physiological, morphological, and biochemical processes. Chromium induces phytotoxicity by interfering plant growth, nutrient uptake and photosynthesis, inducing enhanced generation of reactive oxygen species, causing lipid peroxidation and altering the antioxidant activities. Plants tolerate Cr toxicity via various defense mechanisms such as complexation by organic ligands, compartmentation into the vacuole, and scavenging ROS via antioxidative enzymes. Consumption of Cr-contaminated-food can cause human health risks by inducing severe clinical conditions. Therefore, there is a dire need to monitor biogeochemical behavior of Cr in soil-plant system. Copyright © 2017 Elsevier Ltd. All rights reserved.

A Brief History of the use of Electromagnetic Induction Techniques in Soil Survey

NASA Astrophysics Data System (ADS)

Brevik, Eric C.; Doolittle, James

2017-04-01

Electromagnetic induction (EMI) has been used to characterize the spatial variability of soil properties since the late 1970s. Initially used to assess soil salinity, the use of EMI in soil studies has expanded to include: mapping soil types; characterizing soil water content and flow patterns; assessing variations in soil texture, compaction, organic matter content, and pH; and determining the depth to subsurface horizons, stratigraphic layers or bedrock, among other uses. In all cases the soil property being investigated must influence soil apparent electrical conductivity (ECa) either directly or indirectly for EMI techniques to be effective. An increasing number and diversity of EMI sensors have been developed in response to users' needs and the availability of allied technologies, which have greatly improved the functionality of these tools and increased the amount and types of data that can be gathered with a single pass. EMI investigations provide several benefits for soil studies. The large amount of georeferenced data that can be rapidly and inexpensively collected with EMI provides more complete characterization of the spatial variations in soil properties than traditional sampling techniques. In addition, compared to traditional soil survey methods, EMI can more effectively characterize diffuse soil boundaries and identify included areas of dissimilar soils within mapped soil units, giving soil scientists greater confidence when collecting spatial soil information. EMI techniques do have limitations; results are site-specific and can vary depending on the complex interactions among multiple and variable soil properties. Despite this, EMI techniques are increasingly being used to investigate the spatial variability of soil properties at field and landscape scales. The future should witness a greater use of multiple-frequency and multiple-coil EMI sensors and integration with other sensors to assess the spatial variability of soil properties. Data analysis will be improved with advanced processing and presentation systems and more sophisticated geostatistical modeling algorithms will be developed and used to interpolate EMI data, improve the resolution of subsurface features, and assess soil properties.

Study of soil aggregate breakdown dynamics under low dispersive ultrasonic energies with sedimentation and X-ray attenuation**

PubMed Central

Schomakers, Jasmin; Zehetner, Franz; Mentler, Axel; Ottner, Franz; Mayer, Herwig

2016-01-01

It has been increasingly recognized that soil organic matter stabilization is strongly controlled by physical binding within soil aggregates. It is therefore essential to measure soil aggregate stability reliably over a wide range of disruptive energies and different aggregate sizes. To this end, we tested high-accuracy ultrasonic dispersion in combination with subsequent sedimentation and X-ray attenuation. Three arable topsoils (notillage) from Central Europe were subjected to ultrasound at four different specific energy levels: 0.5, 6.7, 100 and 500 J cm−3, and the resulting suspensions were analyzed for aggregate size distribution by wet sieving (2 000-63 μm) and sedimentation/X-ray attenuation (63-2 μm). The combination of wet sieving and sedimentation technique allowed for a continuous analysis, at high resolution, of soil aggregate breakdown dynamics after defined energy inputs. Our results show that aggregate size distribution strongly varied with sonication energy input and soil type. The strongest effects were observed in the range of low specific energies (< 10 J cm−3), which previous studies have largely neglected. This shows that low ultrasonic energies are required to capture the full range of aggregate stability and release of soil organic matter upon aggregate breakdown. PMID:27099408

Study of soil aggregate breakdown dynamics under low dispersive ultrasonic energies with sedimentation and X-ray attenuation

NASA Astrophysics Data System (ADS)

Schomakers, Jasmin; Zehetner, Franz; Mentler, Axel; Ottner, Franz; Mayer, Herwig

2015-10-01

It has been increasingly recognized that soil organic matter stabilization is strongly controlled by physical binding within soil aggregates. It is therefore essential to measure soil aggregate stability reliably over a wide range of disruptive energies and different aggregate sizes. To this end, we tested highaccuracy ultrasonic dispersion in combination with subsequent sedimentation and X-ray attenuation. Three arable topsoils (notillage) from Central Europe were subjected to ultrasound at four different specific energy levels: 0.5, 6.7, 100 and 500 J cm-3, and the resulting suspensions were analyzed for aggregate size distribution by wet sieving (2 000-63 μm) and sedimentation/X-ray attenuation (63-2 μm). The combination of wet sieving and sedimentation technique allowed for a continuous analysis, at high resolution, of soil aggregate breakdown dynamics after defined energy inputs. Our results show that aggregate size distribution strongly varied with sonication energy input and soil type. The strongest effects were observed in the range of low specific energies (< 10 J cm-3), which previous studies have largely neglected. This shows that low ultrasonic energies are required to capture the full range of aggregate stability and release of soil organic matter upon aggregate breakdown.

[Environmental geochemical baseline of heavy metals in soils of the Ili river basin and pollution evaluation].

PubMed

Zhao, Xin-Ru; Nasier, Telajin; Cheng, Yong-Yi; Zhan, Jiang-Yu; Yang, Jian-Hong

2014-06-01

Environmental geochemical baseline models of Cu, Zn, Pb, As, Hg were established by standardized method in the ehernozem, chestnut soil, sierozem and saline soil from the Ili river valley region. The theoretical baseline values were calculated. Baseline factor pollution index evaluation method, environmental background value evaluation method and heavy metal cleanliness evaluation method were used to compare soil pollution degrees. The baseline factor pollution index evaluation showed that As pollution was the most prominent among the four typical types of soils within the river basin, with 7.14%, 9.76%, 7.50% of sampling points in chernozem, chestnut soil and sierozem reached the heavy pollution, respectively. 7.32% of sampling points of chestnut soil reached the permitted heavy metal Pb pollution index in the chestnut soil. The variation extent of As and Pb was the largest, indicating large human disturbance. Environmental background value evaluation showed that As was the main pollution element, followed by Cu, Zn and Pb. Heavy metal cleanliness evaluation showed that Cu, Zn and Pb were better than cleanliness level 2 and Hg was the of cleanliness level 1 in all four types of soils. As showed moderate pollution in sierozem, and it was of cleanliness level 2 or better in chernozem, chestnut soil and saline-alkali soil. Comparing the three evaluation systems, the baseline factor pollution index evaluation more comprehensively reflected the geochemical migration characteristics of elements and the soil formation processes, and the pollution assessment could be specific to the sampling points. The environmental background value evaluation neglected the natural migration of heavy metals and the deposition process in the soil since it was established on the regional background values. The main purpose of the heavy metal cleanliness evaluation was to evaluate the safety degree of soil environment.

Characterization of biomass residues and their amendment effects on water sorption and nutrient leaching in sandy soil.

PubMed

Wang, Letian; Tong, Zhaohui; Liu, Guodong; Li, Yuncong

2014-07-01

In this study, we evaluated the efficiency of two types of biomass residues (fermentation residues from a bioethanol process, FB; brown mill residues from a papermaking process, BM) as amendments for a sandy soil. The characteristics of these residues including specific surface areas, morphologies and nutrient sorption capacity were measured. The effects of biorefinery residues on water and nutrient retention were investigated in terms of different particle sizes and loadings. The results indicated that bio-based wastes FB and BM were able to significantly improve water and nutrient retention of sandy soil. The residues with larger surface areas had better water and nutrient retention capability. Specifically, in the addition of 10% loading, FB and BM was able to improve water retention by approximately 150% and 300%, while reduce 99% of ammonium and phosphate concentration in the leachate compare to the soil control, respectively. Copyright © 2014 Elsevier Ltd. All rights reserved.

Butterfly Gardens.

ERIC Educational Resources Information Center

Denman, Kim

1996-01-01

Describes designing and planting a garden to attract butterflies specifically as a project for school grounds. Site and soil requirements are covered as well as types of plants. Includes a list of educational opportunities a garden provides in various subject areas. (AIM)

Development of a low-cost soil moisture sensor for in-situ data collection by citizen scientists

NASA Astrophysics Data System (ADS)

Rajasekaran, E.; Jeyaram, R.; Lohrli, C.; Das, N.; Podest, E.; Hovhannesian, H.; Fairbanks, G.

2017-12-01

Soil moisture (SM) is identified as an Essential Climate Variable and it exerts a strong influence on agriculture, hydrology and land-atmosphere interaction. The aim of this project is to develop an affordable (low-cost), durable, and user-friendly, sensor and an associated mobile app to measure in-situ soil moisture by the citizen scientists or any K-12 students. The sensor essentially measures the electrical resistance between two metallic rods and the resistance is converted into SM based on soil specific calibration equations. The sensor is controlled by a micro-controller (Arduino) and a mobile app (available both for iOS and Android) reads the resistance from the micro-controller and converts it into SM for the soil type selected by the user. Extensive laboratory tests are currently being carried out to standardize the sensor and to calibrate the sensor for various soil types. The sensor will also be tested during field campaigns and recalibrated for field conditions. In addition to the development of the sensor and the mobile app, supporting documentation and videos are also being developed that show the step-by-step process of building the sensor from scratch and measurement protocols. Initial laboratory calibration and validation of the prototype suggested that the sensor is able to satisfactorily measure SM for sand, loam, sandy loam, sandy clay loam type of soils. The affordable and simple sensor will help citizen scientists to understand the dynamics of SM at their site and the in-situ data will further be utilized for validation of the satellite observations from the SMAP mission.

Fe-C interactions and soil organic matter stability in two tropical soils of contrasting parent materials

NASA Astrophysics Data System (ADS)

Coward, E.; Thompson, A.; Plante, A. F.

2014-12-01

The long residence time of soil organic matter (SOM) is a dynamic property, reflecting the diversity of stabilization mechanisms active within the soil matrix. Climate and ecosystem properties act at the broadest scale, while biochemical recalcitrance, physical occlusion and mineral association drive stability at the microscale. Increasing evidence suggests that the stability of SOM is dominated by organo-mineral interactions. However, the 2:1 clays that provide much of the stabilization capacity in temperate soils are typically absent in tropical soils due to weathering. In contrast, these soils may contain an abundance of iron and aluminium oxides and oxyhydroxides, known as short-range-order (SRO) minerals. These SRO minerals are capable of SOM stabilization through adsorption or co-precipitation, a faculty largely enabled by their high specific surface area (SSA). As such, despite their relatively small mass, SRO minerals may contribute substantially to the SOM stabilization capacity of tropical soils. The objective of this work is to characterize and quantify these Fe-C interactions. Surface (0-20 cm) soil samples were taken from 20 quantitative soil pits dug within the Luquillo Critical Zone Observatory in northeast Puerto Rico. Soils were stratified across granodiorite and volcaniclastic parent materials. Four extraction procedures were used to isolate three different forms of Fe-C interactions: sodium pyrophosphate to isolate organo-metallic complexes, hydroxylamine and oxalate to isolate SRO Fe- and Al-hydroxides, and dithionite to isolate crystalline Fe-oxyhydroxides. Extracts were analysed for DOC and Fe and Al concentrations to estimate the amount of SOM associated with each mineral type. Soils were subjected to SSA and solid-phase C analyses before and after extraction to determine the contribution of the various Fe mineral types to soil SSA, and therefore to potential stabilization capacity through organo-mineral complexation. Preliminary results suggest that extracts from granodiorite parent material contain on average twice the Fe than those from volcaniclastic parent material. The removal of SRO minerals reduced SSA in both soil types, and appear to contribute substantially to SOM stabilization compared to the bulk mineral matrix.

Leaching characteristics of toxic constituents from coal fly ash mixed soils under the influence of pH

DOE Office of Scientific and Technical Information (OSTI.GOV)

Komonweeraket, Kanokwan; Cetin, Bora, E-mail: bora.cetin@sdsmt.edu; Benson, Craig H., E-mail: chbenson@wisc.edu

Highlights: • The impact of pH on the leaching of elements and metals from fly ash mixed soils. • Generally Ca, Cd, Mg, and Sr follows a cationic leaching pattern. • The leaching of As and Se shows an oxyanionic leaching pattern. • The leaching behavior of elements does not change based on material type. • Different fly ash types show different abilities in immobilizing trace elements. - Abstract: Leaching behaviors of Arsenic (As), Barium (Ba), Calcium (Ca), Cadmium (Cd), Magnesium (Mg), Selenium (Se), and Strontium (Sr) from soil alone, coal fly ash alone, and soil-coal fly ash mixtures, weremore » studied at a pH range of 2–14 via pH-dependent leaching tests. Seven different types of soils and coal fly ashes were tested. Results of this study indicated that Ca, Cd, Mg, and Sr showed cationic leaching pattern while As and Se generally follows an oxyanionic leaching pattern. On the other hand, leaching of Ba presented amphoteric-like leaching pattern but less pH-dependent. In spite of different types and composition of soil and coal fly ash investigated, the study reveals the similarity in leaching behavior as a function of pH for a given element from soil, coal fly ash, and soil-coal fly ash mixtures. The similarity is most likely due to similar controlling mechanisms (e.g., solubility, sorption, and solid-solution formation) and similar controlling factors (e.g., leachate pH and redox conditions). This offers the opportunity to transfer knowledge of coal fly ash that has been extensively characterized and studied to soil stabilized with coal fly ash. It is speculated that unburned carbon in off-specification coal fly ashes may provide sorption sites for Cd resulting in a reduction in concentration of these elements in leachate from soil-coal fly ash mixture. Class C fly ash provides sufficient CaO to initiate the pozzolanic reaction yielding hydrated cement products that oxyanions, including As and Se, can be incorporated into.« less

Effects of crop management, soil type, and climate on N2O emissions from Austrian Soils

NASA Astrophysics Data System (ADS)

Zechmeister-Boltenstern, Sophie; Sigmund, Elisabeth; Kasper, Martina; Kitzler, Barbara; Haas, Edwin; Wandl, Michael; Strauss, Peter; Poetzelsberger, Elisabeth; Dersch, Georg; Winiwarter, Wilfried; Amon, Barbara

2015-04-01

Within the project FarmClim ("Farming for a better climate") we assessed recent N2O emissions from two selected regions in Austria. Our aim was to deepen the understanding of Austrian N2O fluxes regarding region specific properties. Currently, N2O emissions are estimated with the IPCC default emission factor which only considers the amount of N-input as an influencing factor for N2O emissions. We evaluated the IPCC default emission factor for its validity under spatially distinct environmental conditions. For this two regions for modeling with LandscapeDNDC have been identified in this project. The benefit of using LandscapeDNDC is the detailed illustration of microbial processes in the soil. Required input data to run the model included daily climate data, vegetation properties, soil characteristics and land management. The analysis of present agricultural practices was basis for assessing the hot spots and hot moments of nitrogen emissions on a regional scale. During our work with LandscapeDNDC we were able to adapt specific model algorithms to Austrian agricultural conditions. The model revealed a strong dependency of N2O emissions on soil type. We could estimate how strongly soil texture affects N2O emissions. Based on detailed soil maps with high spatial resolution we calculated region specific contribution to N2O emissions. Accordingly we differentiated regions with deviating gas fluxes compared to the predictions by the IPCC inventory methodology. Taking region specific management practices into account (tillage, irrigation, residuals) calculation of crop rotation (fallow, catch crop, winter wheat, barley, winter barley, sugar beet, corn, potato, onion and rapeseed) resulted in N2O emissions differing by a factor of 30 depending on preceding crop and climate. A maximum of 2% of N fertilizer input was emitted as N2O. Residual N in the soil was a major factor stimulating N2O emissions. Interannual variability was affected by varying N-deposition even in case of constant management practices. High temporal resolution of model outputs enabled us to identify hot moments of N-turnover and total N2O emissions according to extreme weather events. We analysed how strongly these event based emissions, which are not accounted for by classical inventories, affect emission factors. The evaluation of the IPCC default emission factor for its validity under spatially distinct environmental conditions revealed which environmental conditions are responsible for major deviations of actual emissions from the theoretical values. Scrutinizing these conditions can help to improve climate reporting and greenhouse gas mitigation measures.

Remediation techniques for heavy metal-contaminated soils: Principles and applicability.

PubMed

Liu, Lianwen; Li, Wei; Song, Weiping; Guo, Mingxin

2018-08-15

Globally there are over 20millionha of land contaminated by the heavy metal(loid)s As, Cd, Cr, Hg, Pb, Co, Cu, Ni, Zn, and Se, with the present soil concentrations higher than the geo-baseline or regulatory levels. In-situ and ex-situ remediation techniques have been developed to rectify the heavy metal-contaminated sites, including surface capping, encapsulation, landfilling, soil flushing, soil washing, electrokinetic extraction, stabilization, solidification, vitrification, phytoremediation, and bioremediation. These remediation techniques employ containment, extraction/removal, and immobilization mechanisms to reduce the contamination effects through physical, chemical, biological, electrical, and thermal remedy processes. These techniques demonstrate specific advantages, disadvantages, and applicability. In general, in-situ soil remediation is more cost-effective than ex-situ treatment, and contaminant removal/extraction is more favorable than immobilization and containment. Among the available soil remediation techniques, electrokinetic extraction, chemical stabilization, and phytoremediation are at the development stage, while the others have been practiced at full, field scales. Comprehensive assessment indicates that chemical stabilization serves as a temporary soil remediation technique, phytoremediation needs improvement in efficiency, surface capping and landfilling are applicable to small, serious-contamination sites, while solidification and vitrification are the last remediation option. The cost and duration of soil remediation are technique-dependent and site-specific, up to $500ton -1 soil (or $1500m -3 soil or $100m -2 land) and 15years. Treatability studies are crucial to selecting feasible techniques for a soil remediation project, with considerations of the type and degree of contamination, remediation goals, site characteristics, cost effectiveness, implementation time, and public acceptability. Copyright © 2018 Elsevier B.V. All rights reserved.

Landscape scale assessment of soil and water salinization processes in agricultural coastal area.

NASA Astrophysics Data System (ADS)

Elen Bless, Aplena; Follain, Stéphane; Coiln, François; Crabit, Armand

2017-04-01

Soil salinization is among main land degradation process around the globe. It reduces soil quality, disturbs soil function, and has harmful impacts on plant growth that would threaten agricultural sustainability, particularly in coastal areas where mostly susceptible on land degradation because of pressure from anthropogenic activities and at the same time need to preserve soil quality for supporting food production. In this presentation, we present a landscape scale analysis aiming to assess salinization process affecting wine production. This study was carried out at Serignan estuary delta in South of France (Languadoc Roussillon Region, 43˚ 28'N and 3˚ 31'E). It is a sedimentary basin near coastline of Mediterranean Sea. Field survey was design to characterize both space and time variability of soil and water salinity through water electrical conductivity (ECw) and soil 1/5 electrical conductivity (EC1/5). For water measurements, Orb River and groundwater salinity (piezometers) were determined and for soil 1737 samples were randomly collected from different soil depths (20, 50, 80, and 120 cm) between year 2012 and 2016 and measured. In order to connect with agricultural practices observations and interviews with farmers were conducted. We found that some areas combining specific criteria presents higher electrical conductivity: positions with lower elevation (a.s.l), Cambisols (Calcaric) / Fluvisols soil type (WRB) and dominated clay textures. These observations combined with geochemical determination and spatial analysis confirm our first hypothesis of sea salt intrusion as the main driven factor of soil salinity in this region. In this context, identification of salinization process, fine determination of pedological specificities and fine understanding of agricultural practices allowed us to proposed adaptation strategies to restore soil production function. Please fill in your abstract text. Key Words: Salinity, Coastal Agriculture, Landscape, Soil, Water

CONTAMINANTS AND REMEDIAL OPTIONS AT PESTICIDE SITES

EPA Science Inventory

Many types of soils, sediments, and sludges are contaminated with a wide variety of pesticides. ite-specific characteristics such as volume to be treated, extent of contamination, and applicable cleanup goals differ greatly, and contaminant toxicity, migration pathways, persisten...

Calibration of region-specific gates equation for LRFD.

DOT National Transportation Integrated Search

2014-02-01

The objectives of this research are to recalibrate the FHWA-modi ed Gates equation : and update the associated LRFD resistance factor for pile types and local soil conditions : encountered in Louisiana. This research is consistent with FHWA recomm...

Temperature Sensitivity as a Microbial Trait Using Parameters from Macromolecular Rate Theory

PubMed Central

Alster, Charlotte J.; Baas, Peter; Wallenstein, Matthew D.; Johnson, Nels G.; von Fischer, Joseph C.

2016-01-01

The activity of soil microbial extracellular enzymes is strongly controlled by temperature, yet the degree to which temperature sensitivity varies by microbe and enzyme type is unclear. Such information would allow soil microbial enzymes to be incorporated in a traits-based framework to improve prediction of ecosystem response to global change. If temperature sensitivity varies for specific soil enzymes, then determining the underlying causes of variation in temperature sensitivity of these enzymes will provide fundamental insights for predicting nutrient dynamics belowground. In this study, we characterized how both microbial taxonomic variation as well as substrate type affects temperature sensitivity. We measured β-glucosidase, leucine aminopeptidase, and phosphatase activities at six temperatures: 4, 11, 25, 35, 45, and 60°C, for seven different soil microbial isolates. To calculate temperature sensitivity, we employed two models, Arrhenius, which predicts an exponential increase in reaction rate with temperature, and Macromolecular Rate Theory (MMRT), which predicts rate to peak and then decline as temperature increases. We found MMRT provided a more accurate fit and allowed for more nuanced interpretation of temperature sensitivity in all of the enzyme × isolate combinations tested. Our results revealed that both the enzyme type and soil isolate type explain variation in parameters associated with temperature sensitivity. Because we found temperature sensitivity to be an inherent and variable property of an enzyme, we argue that it can be incorporated as a microbial functional trait, but only when using the MMRT definition of temperature sensitivity. We show that the Arrhenius metrics of temperature sensitivity are overly sensitive to test conditions, with activation energy changing depending on the temperature range it was calculated within. Thus, we propose the use of the MMRT definition of temperature sensitivity for accurate interpretation of temperature sensitivity of soil microbial enzymes. PMID:27909429

Woodland carbon code: building an evidence base for the "4 per mil" initiative in land converted to forestry.

NASA Astrophysics Data System (ADS)

Hannam, Jacqueline; Vanguelova, Elena; West, Vicky

2017-04-01

The Woodland Carbon Code is a voluntary standard for woodland creation projects in the UK. Carbon sequestration resulting from certified projects will contribute directly to the UK's national targets for reducing emissions of greenhouse gases (GHG). Whilst this is concerned primarily with above ground capture there is little empirical evidence of the longer term carbon sequestration potential of soils under this land use change in the UK. We present preliminary results from a resurvey of 20 sites originally sampled as part of the soil survey of England and Wales. It includes soil carbon stocks assessed within the soil profile (up to 1m depth) where sites have been converted to forestry in the last 40 years. The small number of sites (n=20) and high variability in soil type, forest type and original land use prevented detailed analysis between these different factors, but overall there was an increase in carbon concentration in the whole profile, driven primarily by an increase the surface organic layers. For all sites combined there was no significant difference in the C stocks between the two survey periods. The increase in carbon stock in the surface organic horizons tended to be offset by a decrease in the mineral subsoils (specifically in Brown Earth soils) primarily as a result of bulk density changes. There are presently insufficient measured data from a range of UK climate, land-use and soil type conditions to quantify with confidence soil C changes during afforestation. This is partly because of the difficulties of detecting relatively slow changes in spatially heterogeneous soils and also obtaining good examples of sites that have undergone documented land use change. Reviewing results from all ongoing afforestation projects in the UK will provide better quantification of the C sequestration potential of forest soils to be accounted for in the Woodland Carbon Code's overall GHG mitigation potential.

Nutrient and dust enrichment in Danish wind erosion sediments for different tillage directions

NASA Astrophysics Data System (ADS)

Mohammadian Behbahani, Ali; Fister, Wolfgang; Heckrath, Goswin; Kuhn, Nikolaus J.

2015-04-01

More than 80% of the soil types in Denmark have a sandy texture. Denmark is also subject to strong offshore and onshore winds, therefore, Danish soils are considered especially vulnerable to wind erosion. Where conventional tillage operations are applied on poorly aggregated soils, tillage ridges are more or less the only roughness element that can be used to protect soils against wind erosion until crop plants are large enough to provide sufficient breaks. Since wind erosion is a selective process, it can be assumed that increasing erosion rates are associated with increasing loss of dust sized particles and nutrients. However, selective erosion is strongly affected by the orientation and respective trapping efficiency of tillage ridges and furrows. The main objective of this study, therefore, was to determine the effect of tillage direction on nutrient mobilization by wind erosion from agricultural land in Denmark. In order to assess the relationship between the enrichment ratio of specific particle sizes and the amount of eroded nutrients, three soils with loamy sand texture, but varying amounts of sand-sized particles, were selected. In addition, a soil with slightly less sand, but much higher organic matter content was chosen. The soils were tested with three different soil surface scenarios (flat surface, parallel tillage, perpendicular tillage) in a wind tunnel simulation. The parallel tillage operation experienced the greatest erosion rates, independent of soil type. Particles with D50 between 100-155 µm showed the greatest risk of erosion. However, due to a greater loss of dust sized particles from perpendicularly tilled surfaces, this wind-surface arrangement showed a significant increase in nutrient enrichment ratio compared to parallel tillage and flat surfaces. The main reason for this phenomenon is most probably the trapping of larger particles in the perpendicular furrows. This indicates that the highest rate of soil protection does not necessarily coincide with lowest soil nutrient losses and dust emissions. For the evaluation of protection measures on these soil types in Denmark it is, therefore, important to differentiate between their effectivity to reduce total soil erosion amount, dust emission, and nutrient loss.

Impact of treated wastewater on growth, respiration and hydraulic conductivity of citrus root systems in light and heavy soils.

PubMed

Paudel, Indira; Cohen, Shabtai; Shaviv, Avi; Bar-Tal, Asher; Bernstein, Nirit; Heuer, Bruria; Ephrath, Jhonathan

2016-06-01

Roots interact with soil properties and irrigation water quality leading to changes in root growth, structure and function. We studied these interactions in an orchard and in lysimeters with clay and sandy loam soils. Minirhizotron imaging and manual sampling showed that root growth was three times lower in the clay relative to sandy loam soil. Treated wastewater (TWW) led to a large reduction in root growth with clay (45-55%) but not with sandy loam soil (<20%). Treated wastewater increased salt uptake, membrane leakage and proline content, and decreased root viability, carbohydrate content and osmotic potentials in the fine roots, especially in clay. These results provide evidence that TWW challenges and damages the root system. The phenology and physiology of root orders were studied in lysimeters. Soil type influenced diameter, specific root area, tissue density and cortex area similarly in all root orders, while TWW influenced these only in clay soil. Respiration rates were similar in both soils, and root hydraulic conductivity was severely reduced in clay soil. Treated wastewater increased respiration rate and reduced hydraulic conductivity of all root orders in clay but only of the lower root orders in sandy loam soil. Loss of hydraulic conductivity increased with root order in clay and clay irrigated with TWW. Respiration and hydraulic properties of all root orders were significantly affected by sodium-amended TWW in sandy loam soil. These changes in root order morphology, anatomy, physiology and hydraulic properties indicate rapid and major modifications of root systems in response to differences in soil type and water quality. © The Author 2016. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Geology and Our Environment. Environmental Education Curriculum. Revised.

ERIC Educational Resources Information Center

Topeka Public Schools, KS.

Rocks, and the soil formed from rock, play a major role in determining such particulars as the type of crops that can be grown in a specific area and the type of housing that can be constructed. Also, rocks may supply fuel and building materials, and provide information about the history of an area. This unit is constructed to expose secondary…

Effect of Metal Oxide Nanoparticles on Microbial Community Structure and Function in Two Different Soil Types

PubMed Central

Frenk, Sammy; Ben-Moshe, Tal; Dror, Ishai; Berkowitz, Brian; Minz, Dror

2013-01-01

Increased availability of nanoparticle-based products will, inevitably, expose the environment to these materials. Engineered nanoparticles (ENPs) may thus find their way into the soil environment via wastewater, dumpsters and other anthropogenic sources; metallic oxide nanoparticles comprise one group of ENPs that could potentially be hazardous for the environment. Because the soil bacterial community is a major service provider for the ecosystem and humankind, it is critical to study the effects of ENP exposure on soil bacteria. These effects were evaluated by measuring bacterial community activity, composition and size following exposure to copper oxide (CuO) and magnetite (Fe3O4) nanosized (<50 nm) particles. Two different soil types were examined: a sandy loam (Bet-Dagan) and a sandy clay loam (Yatir), under two ENP concentrations (1%, 0.1%). Results indicate that the bacterial community in Bet-Dagan soil was more susceptible to change due to exposure to these ENPs, relative to Yatir soil. More specifically, CuO had a strong effect on bacterial hydrolytic activity, oxidative potential, community composition and size in Bet-Dagan soil. Few effects were noted in the Yatir soil, although 1% CuO exposure did cause a significant decreased oxidative potential and changes to community composition. Fe3O4 changed the hydrolytic activity and bacterial community composition in Bet-Dagan soil but did not affect the Yatir soil bacterial community. Furthermore, in Bet-Dagan soil, abundance of bacteria annotated to OTUs from the Bacilli class decreased after addition of 0.1% CuO but increased with 1% CuO, while in Yatir soil their abundance was reduced with 1% CuO. Other important soil bacterial groups, including Rhizobiales and Sphingobacteriaceae, were negatively affected by CuO addition to soil. These results indicate that both ENPs are potentially harmful to soil environments. Furthermore, it is suggested that the clay fraction and organic matter in different soils interact with the ENPs and reduce their toxicity. PMID:24349575

A tiered approach for the human health risk assessment for consumption of vegetables from with cadmium-contaminated land in urban areas

DOE Office of Scientific and Technical Information (OSTI.GOV)

Swartjes, Frank A., E-mail: frank.swartjes@rivm.nl; Versluijs, Kees W.; Otte, Piet F.

Consumption of vegetables that are grown in urban areas takes place worldwide. In developing countries, vegetables are traditionally grown in urban areas for cheap food supply. In developing and developed countries, urban gardening is gaining momentum. A problem that arises with urban gardening is the presence of contaminants in soil, which can be taken up by vegetables. In this study, a scientifically-based and practical procedure has been developed for assessing the human health risks from the consumption of vegetables from cadmium-contaminated land. Starting from a contaminated site, the procedure follows a tiered approach which is laid out as follows. Inmore » Tier 0, the plausibility of growing vegetables is investigated. In Tier 1 soil concentrations are compared with the human health-based Critical soil concentration. Tier 2 offers the possibility for a detailed site-specific human health risk assessment in which calculated exposure is compared to the toxicological reference dose. In Tier 3, vegetable concentrations are measured and tested following a standardized measurement protocol. To underpin the derivation of the Critical soil concentrations and to develop a tool for site-specific assessment the determination of the representative concentration in vegetables has been evaluated for a range of vegetables. The core of the procedure is based on Freundlich-type plant–soil relations, with the total soil concentration and the soil properties as variables. When a significant plant–soil relation is lacking for a specific vegetable a geometric mean of BioConcentrationFactors (BCF) is used, which is normalized according to soil properties. Subsequently, a ‘conservative’ vegetable-group-consumption-rate-weighted BioConcentrationFactor is calculated as basis for the Critical soil concentration (Tier 1). The tool to perform site-specific human health risk assessment (Tier 2) includes the calculation of a ‘realistic worst case’ site-specific vegetable-group-consumption-rate-weighted BioConcentrationFactor. -- Highlights: • A scientifically-based and practical procedure has been developed for assessing the human health risks from the consumption of vegetables. • Uptake characteristics of cadmium in a series of vegetables is represented by a vegetable-group-consumption-rate-weighted BioConcentrationFactor. • Calculations and measurement steps are combined.« less

Estimates of Soil Bacterial Ribosome Content and Diversity Are Significantly Affected by the Nucleic Acid Extraction Method Employed

PubMed Central

Wüst, Pia K.; Nacke, Heiko; Kaiser, Kristin; Marhan, Sven; Sikorski, Johannes; Kandeler, Ellen; Daniel, Rolf

2016-01-01

Modern sequencing technologies allow high-resolution analyses of total and potentially active soil microbial communities based on their DNA and RNA, respectively. In the present study, quantitative PCR and 454 pyrosequencing were used to evaluate the effects of different extraction methods on the abundance and diversity of 16S rRNA genes and transcripts recovered from three different types of soils (leptosol, stagnosol, and gleysol). The quality and yield of nucleic acids varied considerably with respect to both the applied extraction method and the analyzed type of soil. The bacterial ribosome content (calculated as the ratio of 16S rRNA transcripts to 16S rRNA genes) can serve as an indicator of the potential activity of bacterial cells and differed by 2 orders of magnitude between nucleic acid extracts obtained by the various extraction methods. Depending on the extraction method, the relative abundances of dominant soil taxa, in particular Actinobacteria and Proteobacteria, varied by a factor of up to 10. Through this systematic approach, the present study allows guidelines to be deduced for the selection of the appropriate extraction protocol according to the specific soil properties, the nucleic acid of interest, and the target organisms. PMID:26896137

Effect of simulated tillage on microbial autotrophic CO2 fixation in paddy and upland soils

PubMed Central

Ge, Tida; Wu, Xiaohong; Liu, Qiong; Zhu, Zhenke; Yuan, Hongzhao; Wang, Wei; Whiteley, A. S.; Wu, Jinshui

2016-01-01

Tillage is a common agricultural practice affecting soil structure and biogeochemistry. To evaluate how tillage affects soil microbial CO2 fixation, we incubated and continuously labelled samples from two paddy soils and two upland soils subjected to simulated conventional tillage (CT) and no-tillage (NT) treatments. Results showed that CO2 fixation (14C-SOC) in CT soils was significantly higher than in NT soils. We also observed a significant, soil type- and depth-dependent effect of tillage on the incorporation rates of labelled C to the labile carbon pool. Concentrations of labelled C in the carbon pool significantly decreased with soil depth, irrespective of tillage. Additionally, quantitative PCR assays revealed that for most soils, total bacteria and cbbL-carrying bacteria were less abundant in CT versus NT treatments, and tended to decrease in abundance with increasing depth. However, specific CO2 fixation activity was significantly higher in CT than in NT soils, suggesting that the abundance of cbbL-containing bacteria may not always reflect their functional activity. This study highlights the positive effect of tillage on soil microbial CO2 fixation, and the results can be readily applied to the development of sustainable agricultural management. PMID:26795428

Effects of soil type and organic fertilizers on fatty acids and vitamin E in Korean ginseng (Panax ginseng Meyer).

PubMed

Chung, Ill-Min; Kim, Jae-Kwang; Yang, Jin-Hee; Lee, Ji-Hee; Park, Sung-Kyu; Son, Na-Young; Kim, Seung-Hyun

2017-12-01

This study examined the effects of soil type and fertilizer regimes on variations in fatty acids (FAs) and vitamin E (Vit-E) in 6-year-old ginseng roots. We observed significant variation in both FA and Vit-E contents owing to the type and quantity of organic fertilizer used in each soil type during cultivation. Unsaturated FAs were approximately 2.7-fold higher in ginseng than in saturated FAs. Linoleic, palmitic, and oleic acids were the most abundant FAs detected in ginseng roots. Additionally, α-tocopherol was the major Vit-E detected. In particular, the increased application of rice straw compost or food waste fertilizer elevated the quantity of nutritionally desirable FAs and bioactive Vit-E in ginseng root. Partial least square-discriminant analysis (PLS-DA) score plots showed that soil type might be the main cause of differences in FA and Vit-E levels in ginseng. Specifically, the PLS-DA model indicated that palmitic acid is a suitable FA marker in determining whether ginseng plants were grown in a paddy-converted field or an upland field. Moreover, linoleic acid levels were highly correlated with α-linolenic acid (r=0.8374; p<0.0001) according to Pearson's correlations and hierarchical clustering analysis. Hence, these preliminary results should prove useful for the reliable production of ginseng containing high phytonutrient quantities according to cultivation conditions. Copyright © 2017 Elsevier Ltd. All rights reserved.

Termite infestation associated with type of soil in pulau pinang, malaysia (isoptera: rhinotermitidae).

PubMed

Majid, Abdul Hafiz Ab; Ahmad, Abu Hassan

2013-12-01

Nine soil samples from nine buildings infested with Coptotermes gestroi in Pulau Pinang, Malaysia, were tested for the type of soil texture. The soil texture analysis procedures used the hydrometer method. Four of nine buildings (44%) yielded loamy sand-type soil, whereas five of nine buildings (56%) contained sandy loam-type soil.

Termite Infestation Associated with Type of Soil in Pulau Pinang, Malaysia (Isoptera: Rhinotermitidae)

PubMed Central

Majid, Abdul Hafiz Ab; Ahmad, Abu Hassan

2013-01-01

Nine soil samples from nine buildings infested with Coptotermes gestroi in Pulau Pinang, Malaysia, were tested for the type of soil texture. The soil texture analysis procedures used the hydrometer method. Four of nine buildings (44%) yielded loamy sand-type soil, whereas five of nine buildings (56%) contained sandy loam-type soil. PMID:24575252

Effluent characterization and different modes of reuse in agriculture-a model case study.

PubMed

Das, Madhumita; Kumar, Ashwani

2009-06-01

High-quality waters are steadily retreating worldwide. Discharge of industrial effluent in the environment again declines soil/water quality to a great extent. On the other hand, effluent reuse in agriculture could be a means to conserve natural resources by providing assured water supply for growing crops. But industrial effluents are highly variable in nature, containing a variety of substances, and all are not favorable for farming. Appraisal and developing modes of effluent reuse is therefore a prerequisite to enable its proper use in agriculture. Effluents of various industries were assessed and approaches for their use in farming were developed for a particular region in this study. As per availability of effluents, the same could be implemented in other water-scarce areas. Effluents of 20 different industrial units were characterized by 24 attributes. Comparing these with corresponding irrigation water quality standards, the probability of their reuse was interpreted in the first approach. On the basis of relevant properties of major soil types dominated in a particular region, the soil-based usability of effluent was worked out in the second approach. By emphasizing the limitation of groundwater development where it went beyond 50% exploitation level, the land form and major soil type were then identified by applying a soil-based effluent reuse approach; the area-specific suitability of its use was perceived in the third approach. On the basis of irrigation water quality standards, the irrigation potentials of paper mill, fermentation (breweries and distilleries), and sugar factory effluents were recognized. In a soil-based approach, the compatibility of effluent with soil type was marked with A (preferred) and B (moderately preferred) classes and, compiling their recurring presence, the unanimous preference for paper mill effluent followed by rubber goods manufacturing industries/marine shrimp processing units, fermentation, and sugar mills was noted. Usability of these was also evident from a groundwater exploitation status-based approach. The approaches of assessing industrial effluents differing in compositions systematically reflected the ability and applicability of certain effluents in agriculture. The context-specific assessment of effluent offers options to compare effluent from a range of viewpoints and enhances its reasonability of use for growing crops. Chemical characterization of various industrial effluents first disclosed their potential of reuse. The soil-properties-based compatibility of effluent focused their prospects of use and groundwater-exploitation-status-based portrayed its area of use in a specific region. Assessment of effluent through these enhances reliability and appropriateness of its reuse in agriculture. Options of industrial effluent (prospective) reuse in agriculture provide ways to combat freshwater crisis without degrading environmental quality. It may be applied for assessing effluent before its reuse in several water-starved countries.

Choosing indicators of natural resource condition: A case study in Arches National Park, Utah, USA

USGS Publications Warehouse

Belnap, J.

1998-01-01

Heavy visitor use in many areas of the world have necessitated development of ways to assess visitation impacts. Arches National Park recently completed a Visitor Experience and Resource Protection (VERP) plan. Integral to this plan was developing a method to identify biological indicators that would both measure visitor impacts and response to management actions. The process used in Arches for indicator selection is outlined here as a model applicable to many areas facing similar challenges. The steps were: (1) Vegetation types most used by visitors were identified. Impacted and unimpacted areas in these types were sampled, comparing vegetation and soil factors. (2) Variables found to differ significantly between compared sites were used as potential indicators. (3) Site-specific criteria for indicators were developed, and potential indicators evaluated using these criteria. (4) Chosen indicators were further researched for ecological relevancy. (5) Final indicators were chosen, field tested, and monitoring sites designated. In Arches, indicators were chosen for monitoring annually (soil crust index, soil compaction, number of used social trails and soil aggregate stability) and every five years (vegetation cover and frequency; ground cover; soil chemistry; and plant tissue chemistry).

Effect of grazing on methane uptake from Eurasian steppe of China.

PubMed

Tang, Shiming; Zhang, Yujuan; Zhai, Xiajie; Wilkes, Andreas; Wang, Chengjie; Wang, Kun

2018-03-20

The effects of grazing on soil methane (CH 4 ) uptake in steppe ecosystems are important for understanding carbon sequestration and cycling because the role of grassland soil for CH 4 uptake can have major impacts at the global level. Here, a meta-analysis of 27 individual studies was carried out to assess the response patterns of soil CH 4 uptake to grazing in steppe ecosystems of China. The weighted log response ratio was used to assess the effect size. We found that heavy grazing significantly depressed soil CH 4 uptake by 36.47%, but light and moderate grazing had no significant effects in grassland ecosystem. The response of grassland soil CH 4 uptake to grazing also was found to depend upon grazing intensity, grazing duration and climatic types. The increase in soil temperature and reduced aboveground biomass and soil moisture induced by heavy grazing may be the major regulators of the soil CH 4 uptake. These findings imply that grazing effects on soil CH 4 uptake are highly context-specific and that grazing in different grasslands might be managed differently to help mitigate greenhouse gas emissions.

Transplant production

USDA-ARS?s Scientific Manuscript database

For field pepper (Capsicum spp.) production, plants can be established from direct seed or transplants depending on the location and cultural practices for the specific pepper type grown. Direct seeding can result in slow, variable, and reduced plant stands due to variations in soil temperature, wat...

Effects of biochars on hydraulic properties of clayey soil

NASA Astrophysics Data System (ADS)

Zhen, Jingbo; Palladino, Mario; Lazarovitch, Naftali; Bonanomi, Giuliano; Battista Chirico, Giovanni

2017-04-01

Biochar has gained popularity as an amendment to improve soil hydraulic properties. Since biochar properties depend on feedstocks and pyrolysis temperatures used for its production, proper selection of biochar type as soil amendment is of great importance for soil hydraulic properties improvement. This study investigated the effects of eight types of biochar on physical and hydraulic properties of clayey soil. Biochars were derived from four different feedstocks (Alfalfa hay, municipal organic waste, corn residues and wood chip) pyrolyzed at two different temperatures (300 and 550 °C). Clayey soil samples were taken from Leone farm (40° 26' 15.31" N, 14° 59' 45.54" E), Italy, and were oven-dried at 105 °C to determine dry bulk density. Biochars were mixed with the clayey soil at 5% by mass. Bulk densities of the mixtures were also determined. Saturated hydraulic conductivities (Ks) of the original clayey soil and corresponding mixtures were measured by means of falling-head method. Soil water retention measurements were conducted for clayey soil and mixtures using suction table apparatus and Richards' plate with the pressure head (h) up to 12000 cm. van Genuchten retention function was selected to evaluate the retention characteristics of clayey soil and mixtures. Available water content (AWC) was calculated by field capacity (h = - 500 cm) minus wilting pointing (h = -12000 cm). The results showed that biochar addition decreased the bulk density of clayey soil. The Ks of clayey soil increased due to the incorporation of biochars except for waste and corn biochars pyrolyzed at 550 °C. AWC of soils mixed with corn biochar pyrolyzed at 300 °C and wood biochar pyrolyzed at 550 °C, increased by 31% and 7%, respectively. Further analysis will be conducted in combination of biochar properties such as specific surface area and total pore volume. Better understanding of biochar impact on clayey soil will be helpful in biochar selection for soil amendment and improving water use efficiency in agriculture.

Root traits predict decomposition across a landscape-scale grazing experiment

PubMed Central

Smith, Stuart W; Woodin, Sarah J; Pakeman, Robin J; Johnson, David; van der Wal, René

2014-01-01

Root litter is the dominant soil carbon and nutrient input in many ecosystems, yet few studies have considered how root decomposition is regulated at the landscape scale and how this is mediated by land-use management practices. Large herbivores can potentially influence below-ground decomposition through changes in soil microclimate (temperature and moisture) and changes in plant species composition (root traits). To investigate such herbivore-induced changes, we quantified annual root decomposition of upland grassland species in situ across a landscape-scale livestock grazing experiment, in a common-garden experiment and in laboratory microcosms evaluating the influence of key root traits on decomposition. Livestock grazing increased soil temperatures, but this did not affect root decomposition. Grazing had no effect on soil moisture, but wetter soils retarded root decomposition. Species-specific decomposition rates were similar across all grazing treatments, and species differences were maintained in the common-garden experiment, suggesting an overriding importance of litter type. Supporting this, in microcosms, roots with lower specific root area (m2 g−1) or those with higher phosphorus concentrations decomposed faster. Our results suggest that large herbivores alter below-ground carbon and nitrogen dynamics more through their effects on plant species composition and associated root traits than through effects on the soil microclimate. PMID:24841886

Contribution of species-specific chemical signatures to soil organic matter in Kohala, HI.

NASA Astrophysics Data System (ADS)

Stewart, C. E.; Amatangelo, K.; Neff, J. C.

2008-12-01

Soil organic matter (SOM) inherits much of its chemical structure from the dominant vegetation, including phenolic (lignin-derived), aromatic, and aliphatic (cutin and wax-derived) compounds. The Hawaiian fern species Dicranopteris decomposes more slowly than the angiosperm, Cheirodendron due to high concentrations of recalcitrant C compounds. These aliphatic fern leaf waxes are well-preserved and may comprise a large portion of the recalcitrant organic matter in these soils. Our objective was to determine the chemical signature of fern and angiosperm vegetation types and trace the preservation or loss of those compounds into the soil. We collected live tissue, litter, roots, and soil (<53 μm) from five dominant vegetation types including two angiosperms Cheirodendron and Metrosideros, two basal ferns Dicranopteris and Cibotium and a polypod fern Diplazium in Kohala, HI. We characterized them via TMAH-pyrolysis-gas chromatography-mass spectrometry. We found distinct chemical differences between angiosperm and fern vegetation; angiosperm contained more G- and S-derived lignin structures and the fern species contained greater relative abundances of P-derived lignin and tannin-derivatives. There was a general decrease of lignin-derived phenolic compounds from live to litter to soils and an increase in more recalcitrant, aromatic and aliphatic C. Recalcitrant fern-derived cutin and leaf waxes (alkene and alkanes structures) were evident in the soils, but clear species differences were not observed. Although ferns contain distinct lipid and wax-derived compounds, soils developed under fern do not appear to accumulate these compounds in SOM.

Impact of axial root growth angles on nitrogen acquisition in maize depends on environmental conditions.

PubMed

Dathe, A; Postma, J A; Postma-Blaauw, M B; Lynch, J P

2016-09-01

Crops with reduced requirement for nitrogen (N) fertilizer would have substantial benefits in developed nations, while improving food security in developing nations. This study employs the functional structural plant model SimRoot to test the hypothesis that variation in the growth angles of axial roots of maize (Zea mays L.) is an important determinant of N capture. Six phenotypes contrasting in axial root growth angles were modelled for 42 d at seven soil nitrate levels from 10 to 250 kg ha(-1) in a sand and a silt loam, and five precipitation regimes ranging from 0·5× to 1·5× of an ambient rainfall pattern. Model results were compared with soil N measurements of field sites with silt loam and loamy sand textures. For optimal nitrate uptake, root foraging must coincide with nitrate availability in the soil profile, which depends on soil type and precipitation regime. The benefit of specific root architectures for efficient N uptake increases with decreasing soil N content, while the effect of soil type increases with increasing soil N level. Extreme root architectures are beneficial under extreme environmental conditions. Extremely shallow root systems perform well under reduced precipitation, but perform poorly with ambient and greater precipitation. Dimorphic phenotypes with normal or shallow seminal and very steep nodal roots performed well in all scenarios, and consistently outperformed the steep phenotypes. Nitrate uptake increased under reduced leaching conditions in the silt loam and with low precipitation. Results support the hypothesis that root growth angles are primary determinants of N acquisition in maize. With decreasing soil N status, optimal angles resulted in 15-50 % greater N acquisition over 42 d. Optimal root phenotypes for N capture varied with soil and precipitation regimes, suggesting that genetic selection for root phenotypes could be tailored to specific environments. © The Author 2016. Published by Oxford University Press on behalf of the Annals of Botany Company. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Rock and Soil Types at Pathfinder Landing Site

NASA Technical Reports Server (NTRS)

1997-01-01

Type areas of rocks and soils. (A) Dark rock type and bright soil type: Shown is the dark rock Barnacle Bill. Reflectance spectra typical of fresh basalt and APXS spectra indicating more silica-rich basaltic andesite compositions characterize this type. These rocks are typically the small boulders and intermediate-sized cobbles at the Pathfinder site. The bright soil type is very common and in this case comprises Barnacle Bill's wind tail and much of the surround soil area. This soil has a high reflectance and a strongly reddened spectrum indicative of oxidized ferric minerals. (B) Bright rock type: Shown is the bright rock Wedge. Reflectance spectra typical of weathered basalt and APXS spectra indicating basaltic compositions characterize this type. These rocks are typically larger than 1 meter in diameter and many display morphologies indicating flood deposition. (C) Pink rock type: Shown is the pink rock Scooby Doo. APXS and reflectance spectra indicate a composition and optical characteristics similar to the drift soil. However, the morphology of the pink rock type indicates a cemented or rocklike structure. This material may be a chemically cemented hardpan that underlies much of the Pathfinder site. (D) Dark soil type: The dark soil type is typically found on the windward sides of rocks or in rock-free areas like Photometry Flats (shown here) where the bright soil has been striped away by aeolian action or in open areas. Other locations include the Mermaid Dune. (E) Disturbed soil type: The darkening of disturbed soil relative to its parent material, bright soil, as a result of changes in soil texture and compaction caused by movement of the rover and retraction of the lander airbag. (F) Lamb-like soil type: This soil type shows reflectance and spectral characteristics intermediate between the bright and dark soils. Its distinguishing feature is a weak spectral absorption near 900 nanometers not seen in either the bright or dark soils.

NOTE: original caption as published in Science Magazine

Mars Pathfinder is the second in NASA's Discovery program of low-cost spacecraft with highly focused science goals. The Jet Propulsion Laboratory, Pasadena, CA, developed and manages the Mars Pathfinder mission for NASA's Office of Space Science, Washington, D.C. JPL is a division of the California Institute of Technology (Caltech).

Improved chemometric methodologies for the assessment of soil carbon sequestration mechanisms

NASA Astrophysics Data System (ADS)

Jiménez-González, Marco A.; Almendros, Gonzalo; Álvarez, Ana M.; González-Vila, Francisco J.

2016-04-01

The factors involved soil C sequestration, which is reflected in the highly variable content of organic matter in the soils, are not yet well defined. Therefore, their identification is crucial for understanding Earth's biogeochemical cycle and global change. The main objective of this work is to contribute to a better qualitative and quantitative assessment of the mechanisms of organic C sequestration in the soil, using omic approaches not requiring the detailed knowledge of the structure of the material under study. With this purpose, we have carried out a series of chemometric approaches on a set of widely differing soils (35 representative ecosystems). In an exploratory phase, we used multivariate statistical models (e.g., multidimensional scaling, discriminant analysis with automatic backward variable selection…) to analyze arrays of more than 200 independent soil variables (physicochemical, spectroscopic, pyrolytic...) in order to select those factors (descriptors or proxies) that explain most of the total system variance (content and stability of the different C forms). These models showed that the factors determining the stabilization of organic material are greatly dependent on the soil type. In some cases, the molecular structure of organic matter seemed strongly correlated with their resilience, while in other soil types the organo-mineral interactions played a significant bearing on the accumulation of selectively preserved C forms. In any case, it was clear that the factors driving the resilience of organic matter are manifold and not exclusive. Consequently, in a second stage, prediction models of the soil C content and their biodegradability (laboratory incubation experiments) were carried out by massive data processing by partial least squares (PLS) regression of data from Py-GC-MS and Py-MS. In some models, PLS was applied to a matrix of 150 independent variables corresponding to major pyrolysis compounds (peak areas) from the 35 samples of whole soils. The variable importance in the projection (VIP) histogram obtained from this treatment (total C and total mineralization coefficients as dependent variables) illustrated the contribution of the individual compounds to the total inertia of the models (e.g., carbohydrate-derived compounds, methoxyphenols, or specific alkylbenzenes were relevant in explaining the total quality and the biodegradation rates of the organic matter). Further simplified models consisting of direct PLS analysis of the debugged ion matrix calculated by averaging all ions (45 - 250 amu) in the whole chromatographic area in the 5-60 min range (here referred to as 'rebuilt MS spectra' or 'Py-MS spectra' when obtained connecting directly the pyrolyser to the MS detector through suitable interfaces) were carried out. The above three approaches coincided in pointing out that C sequestration behave as an emergent soil property depending on the complexity of its progressive molecular levels. Most of the total variance is explained by specific assemblages of variables, strongly depending on the soil types. On the other hand, chemical biodiversity (e.g., Shannon indices or coefficients from multivariate data models) behaved as a common background in the prediction models including very different soil types. In fact, assessment of chemodiversity of the pyrolytic compound assemblages (or the Py-MS ion data) would represent a valid clue for the assessment of the extent to which the original biomass has been diagenetically reworked into chaotic structures with non-repeatable units, providing a useful proxy to forecast at least a portion of the total variance in the soil organic matter biodegradability.

Aromatic proteinaceous surfactants stabilize long-lived gas microbubbles from natural sources

NASA Technical Reports Server (NTRS)

Darrigo, J. S.

1981-01-01

Three different types of protein-specific chemical tests were performed on long-lived gas microbubbles derived from aqueous solutions of agarose powder and from filtered aqueous extracts of Hawaiian forest soil. The separate protein-specific tests involved use of either 0.3% (w/v) ninhydrin, 100 microM methylene blue dye, or 0.7-1.0 M 2-hydroxy-5-nitrobenzyl bromide. The chemical test results obtained with each of the two natural substances, i.e., agarose powder and Hawaiian forest soil, were very similar and indicate that the biological surfactants which surround and stabilize long-lived gas microbubbles are proteinaceous compounds that contain, and whose surface activity depends upon, aromatic amino acid residues, particularly tryptophan.

Optimization of an extraction protocol for organic matter from soils and sediments using high resolution mass spectrometry: selectivity and biases

NASA Astrophysics Data System (ADS)

Chu, R. K.; Tfaily, M. M.; Tolic, N.; Kyle, J. E.; Robinson, E. R.; Hess, N. J.; Paša-Tolić, L.

2015-12-01

Soil organic matter (SOM) is a complex mixture of above and belowground plant litter and microbial residues, and is a key reservoir for carbon (C) and nutrient biogeochemical cycling in different ecosystems. A limited understanding of the molecular composition of SOM prohibits the ability to routinely decipher chemical processes within soil and predict how terrestrial C fluxes will response to changing climatic conditions. Here, we present that the choice of solvent can be used to selectively extract different compositional fractions from SOM to either target a specific class of compounds or gain a better understanding of the entire composition of the soil sample using 12T Fourier transform ion cyclotron resonance mass spectrometry. Specifically, we found that hexane and chloroform were selective for lipid-like compounds with very low O:C ratios; water was selective for carbohydrates with high O:C ratios; acetonitrile preferentially extracts lignin, condensed structures, and tannin polyphenolic compounds with O:C > 0.5; methanol has higher selectivity towards lignin and lipid compounds characterized with relatively low O:C < 0.5. Hexane, chloroform, methanol, acetonitrile and water increase the number and types of organic molecules extracted from soil for a broader range of chemically diverse soil types. Since each solvent extracts a selective group of compounds, using a suite of solvents with varying polarity for analysis results in more comprehensive representation of the diversity of organic molecules present in soil and a better representation of the whole spectrum of available substrates for microorganisms. Moreover, we have developed a sequential extraction protocol that permits sampling diverse classes of organic compounds while minimizing ionization competition during ESI while increasing sample throughput and decreasing sample volume. This allowed us to hypothesize about possible chemical reactions relating classes of organic molecules that reflect abiotic and biotic processes impacting SOM composition.

Influences of Moisture Regimes and Functional Plant Types on Nutrient Cycling in Permafrost Regions

NASA Astrophysics Data System (ADS)

McCaully, R. E.; Arendt, C. A.; Newman, B. D.; Heikoop, J. M.; Wilson, C. J.; Sevanto, S.; Wales, N. A.; Wullschleger, S.

2017-12-01

In the permafrost-dominated Arctic, climatic feedbacks exist between permafrost, soil moisture, functional plant type and presence of nutrients. Functional plant types present within the Arctic regulate and respond to changes in hydrologic regimes and nutrient cycling. Specifically, alders are a member of the birch family that use root nodules to fix nitrogen, which is a limiting nutrient strongly linked to fertilizing Arctic ecosystems. Previous investigations in the Seward Peninsula, AK show elevated presence of nitrate within and downslope of alder patches in degraded permafrost systems, with concentrations an order of magnitude greater than that of nitrate measured above these patches. Further observations within these degraded permafrost systems are crucial to assess whether alders are drivers of, or merely respond to, nitrate fluxes. In addition to vegetative feedbacks with nitrate supply, previous studies have also linked low moisture content to high nitrate production. Within discontinuous permafrost regions, the absence of permafrost creates well-drained regions with unsaturated soils whereas the presence of permafrost limits vertical drainage of soil-pore water creating elevated soil moisture content, which likely corresponds to lower nitrate concentrations. We investigate these feedbacks further in the Seward Peninsula, AK, through research supported by the United States Department of Energy Next Generation Ecosystem Experiment (NGEE) - Arctic. Using soil moisture and thaw depth as proxies to determine the extent of permafrost degradation, we identify areas of discontinuous permafrost over a heterogeneous landscape and collect co-located soilwater chemistry samples to highlight the complex relationships that exist between alder patches, soil moisture regimes, the presence of permafrost and available nitrate supply. Understanding the role of nitrogen in degrading permafrost systems, in the context of both vegetation present and soil moisture, is crucial to understand the impacts of a warming climate on biogeochemical cycling in permafrost regions.

Preliminary evaluation of septic-system absorption-field architecture types in a profile-limited soil.

PubMed

Mathis, Amanda J; Brye, Kristofor R; Dunn, Sam

2011-01-01

Managing household wastewater is an issue that affects hundreds of thousands of people in rural communities nationwide, many of whom rely on septic systems as their primary means of household wastewater disposal. Septic system absorption field products with architectures quite different from traditional pipe-and-gravel systems are being installed in many states with variances from initial design specifications. The objective of this study was to evaluate the performance, as measured by the in-product height of stored solution, of four differing absorption-field product architecture types in a profile-limited soil that was loaded at the maximum allowable rate based on soil morphology. Five chamber, two gravel-less pipe, two polystyrene aggregate, and four pipe-and-gravel systems were installed in a profile-limited, Captina silt loam soil (fine-silty, siliceous, active, mesic Typic Fragiudult) and dosed with raw effluent at rates determined by current State of Arkansas regulations via individual peristaltic pumps. Free-solution monitoring ports were installed within each product, where the depth to free solution was measured periodically and used to evaluate product performance. Data collected from January through August 2009 indicated that preliminary system performance was unaffected by product architecture type. All products performed similarly under dry soil conditions. However, differences among individual products were observed during periods of hydrologic stress (i.e., wet soil conditions). Surfacing of effluent was not observed atop any product, indicating that the current loading rate design method is functioning properly. Preliminary results indicate that some alternative absorption-field products perform similarly to the traditional pipe-and-gravel system, thus providing flexibility and options for homeowners. by the American Society of Agronomy, Crop Science Society of America, and Soil Science Society of America, Inc.

Influence of Long-term Application of Feedlot Manure Amendments on Water Repellency of a Clay Loam Soil.

PubMed

Miller, Jim J; Beasley, Bruce W; Hazendonk, Paul; Drury, Craig F; Chanasyk, David S

2017-05-01

Long-term application of feedlot manure to cropland may increase the quantity of soil organic carbon (C) and change its quality, which may influence soil water repellency. The objective was to determine the influence of feedlot manure type (stockpiled vs. composted), bedding material (straw [ST] vs. woodchips [WD]), and application rate (13, 39, or 77 Mg ha) on repellency of a clay loam soil after 17 annual applications. The repellency was determined on all 14 treatments using the water repellency index ( index), the water drop penetration time (WDPT) method, and molarity of ethanol (MED) test. The C composition of particulate organic matter in soil of five selected treatments after 16 annual applications was also determined using C nuclear magnetic resonance-direct polarization with magic-angle spinning (NMR-DPMAS). Manure type had no significant ( > 0.05) effect on index and WDPT, and MED classification was similar. Mean index and WDPT values were significantly greater and MED classification more hydrophobic for WD than ST. Application rate had no effect on the index, but WDPT was significantly greater and MED classification more hydrophobic with increasing application rate. Strong ( > 0.7) but nonsignificant positive correlations were found between index and WDPT versus hydrophobic (alkyl + aromatic) C, lignin at 74 ppm (O-alkyl), and unspecified aromatic compounds at 144 ppm. Specific aromatic compounds also contributed more to repellency than alkyl, O-alkyl, and carbonyl compounds. Overall, all three methods consistently showed that repellency was greater for WD- than ST-amended clay loam soil, but manure type had no effect. Copyright © by the American Society of Agronomy, Crop Science Society of America, and Soil Science Society of America, Inc.

All fats are not equal: Considerations when using fatty acid biomarkers in compound-specific stable isotope soil and sediment tracing

NASA Astrophysics Data System (ADS)

Reiffarth, Dominic; Petticrew, Ellen; Owens, Philip; Lobb, David

2013-04-01

The development of cost-effective, convenient and reliable methods for tracing sediment movement will help establish water security. The use of compound-specific stable isotopes (CSSIs) has seen limited, small-scale applications, often in watersheds exhibiting exotic and highly diverse vegetation types. The CSSI tracing technique relies on the detection and transport of naturally occurring organics of plant origin (biomarkers); the biomarkers of interest are produced by flora, deposited on the soil and potentially mobilized along with soil particles. In part, the uniqueness of a biomarker is dependent on its biological pathway. As a plant fixes CO2-its primary source of carbon for building larger organic molecules-discrimination against the heavier 13C isotope leads to an enrichment of 12C. The more complex the biological pathway the biomarker has been subjected to, the more discrimination and unique isotopic signature the biomarker exhibits. Successfully implementing CSSI tracing requires recognizing: (i) factors contributing to the natural variability of the isotopic signature (ii) the suitability of a biomarker and (iii) factors affecting sensitivity during analysis. Considering the relatively low input of suitable organic biomarkers into the soil and degree of signal dispersion, care must be taken to isolate and correctly identify biomarkers, particularly where vegetation types show low variability and where long-range transport occurs. Research is currently being conducted in the Horsefly River (British Columbia, Canada) and South Tobacco Creek (Manitoba, Canada) watersheds; the research seeks to address some of these concerns, particularly in a temperate climate where exotic vegetation types are not common and variability is expected to be low.

Selection of Sphingomonadaceae at the base of Laccaria proxima and Russula exalbicans fruiting bodies.

PubMed

Boersma, F G Hidde; Warmink, Jan A; Andreote, Fernando A; van Elsas, Jan Dirk

2009-04-01

The dense hyphal network directly underneath the fruiting bodies of ectomycorrhizal fungi might exert strong influences on the bacterial community of soil. Such fruiting bodies might serve as hot spots for bacterial activity, for instance by providing nutrients and colonization sites in soil. Here, we assessed the putative selection of specific members of the Sphingomonadaceae family at the bases of the fruiting bodies of the ectomycorrhizal fungi Laccaria proxima and Russula exalbicans in comparison to the adjacent bulk soil. To do so, we used a previously designed Sphingomonadaceae-specific PCR-denaturing gradient gel electrophoresis (DGGE) system and complemented this with analyses of sequences from a Sphingomonadaceae-specific clone library. The analyses showed clear selective effects of the fruiting bodies of both fungi on the Sphingomonadaceae community structures. The effect was especially prevalent with R. exalbicans. Strikingly, similar fungi sampled approximately 100 m apart showed similar DGGE patterns, while corresponding bulk soil-derived patterns differed from each other. However, the mycospheres of L. proxima and R. exalbicans still revealed divergent community structures, indicating that different fungi select for different members of the Sphingomonadaceae family. Excision of specific bands from the DGGE patterns, as well as analyses of the clone libraries generated from both habitats, revealed fruiting body-specific Sphingomonadaceae types. It further showed that major groups from the mycospheres of R. exalbicans and L. proxima did not cluster with known bacteria from the database, indicating new groups within the family of Sphingomonadaceae present in these environments.

Pupal development of Ceratitis capitata (Diptera: Tephritidae) and Diachasmimorpha longicaudata (Hymenoptera: Braconidae) at different moisture values in four soil types.

PubMed

Bento, F de M M; Marques, R N; Costa, M L Z; Walder, J M M; Silva, A P; Parra, J R P

2010-08-01

This study aimed to evaluate adult emergence and duration of the pupal stage of the Mediterranean fruit fly, Ceratitis capitata (Wiedemann), and emergence of the fruit fly parasitoid, Diachasmimorpha longicaudata (Ashmead), under different moisture conditions in four soil types, using soil water matric potential. Pupal stage duration in C. capitata was influenced differently for males and females. In females, only soil type affected pupal stage duration, which was longer in a clay soil. In males, pupal stage duration was individually influenced by moisture and soil type, with a reduction in pupal stage duration in a heavy clay soil and in a sandy clay, with longer duration in the clay soil. As matric potential decreased, duration of the pupal stage of C. capitata males increased, regardless of soil type. C. capitata emergence was affected by moisture, regardless of soil type, and was higher in drier soils. The emergence of D. longicaudata adults was individually influenced by soil type and moisture factors, and the number of emerged D. longicaudata adults was three times higher in sandy loam and lower in a heavy clay soil. Always, the number of emerged adults was higher at higher moisture conditions. C. capitata and D. longicaudata pupal development was affected by moisture and soil type, which may facilitate pest sampling and allow release areas for the parasitoid to be defined under field conditions.

Global status of and prospects for protection of terrestrial geophysical diversity.

PubMed

Sanderson, Eric W; Segan, Daniel B; Watson, James E M

2015-06-01

Conservation of representative facets of geophysical diversity may help conserve biological diversity as the climate changes. We conducted a global classification of terrestrial geophysical diversity and analyzed how land protection varies across geophysical diversity types. Geophysical diversity was classified in terms of soil type, elevation, and biogeographic realm and then compared to the global distribution of protected areas in 2012. We found that 300 (45%) of 672 broad geophysical diversity types currently meet the Convention on Biological Diversity's Aichi Target 11 of 17% terrestrial areal protection, which suggested that efforts to implement geophysical diversity conservation have a substantive basis on which to build. However, current protected areas were heavily biased toward high elevation and low fertility soils. We assessed 3 scenarios of protected area expansion and found that protection focused on threatened species, if fully implemented, would also protect an additional 29% of geophysical diversity types, ecoregional-focused protection would protect an additional 24%, and a combined scenario would protect an additional 42%. Future efforts need to specifically target low-elevation sites with productive soils for protection and manage for connectivity among geophysical diversity types. These efforts may be hampered by the sheer number of geophysical diversity facets that the world contains, which makes clear target setting and prioritization an important next step. © 2015 Society for Conservation Biology.

Travel of pollution, and purification en route, in sandy soils

PubMed Central

Baars, J. K.

1957-01-01

The travel of pollution in sandy soils, and the extent to which purification takes place en route, are discussed, with special reference to the possible contamination of ground water—a problem which is of particular importance in the Netherlands, where the water-supply for many of the large towns is drawn from the water underneath the dunes. Specifically, two types of soil pollution are considered: (a) severe pollution of the surface layers with matter concentrated in a small volume of water (e.g., faecal matter from pit privies at camping-sites); and (b) moderate pollution of the surface layers with matter contained in large quantities of water (e.g., organic matter and bacteria in river water used for the artificial recharge of ground water). It is shown that in both these types of pollution the self-purification is sufficient to prevent contamination of the ground water, provided that the soil is very fine and—in the case of the first type—dry and well aerated, and provided that the ground-water level is not too high or the rate of infiltration too great. PMID:13472428

Assimilation of SMOS Retrievals in the Land Information System

NASA Technical Reports Server (NTRS)

Blankenship, Clay B.; Case, Jonathan L.; Zavodsky, Bradley T.; Crosson, William L.

2016-01-01

The Soil Moisture and Ocean Salinity (SMOS) satellite provides retrievals of soil moisture in the upper 5 cm with a 30-50 km resolution and a mission accuracy requirement of 0.04 cm(sub 3 cm(sub -3). These observations can be used to improve land surface model soil moisture states through data assimilation. In this paper, SMOS soil moisture retrievals are assimilated into the Noah land surface model via an Ensemble Kalman Filter within the NASA Land Information System. Bias correction is implemented using Cumulative Distribution Function (CDF) matching, with points aggregated by either land cover or soil type to reduce sampling error in generating the CDFs. An experiment was run for the warm season of 2011 to test SMOS data assimilation and to compare assimilation methods. Verification of soil moisture analyses in the 0-10 cm upper layer and root zone (0-1 m) was conducted using in situ measurements from several observing networks in the central and southeastern United States. This experiment showed that SMOS data assimilation significantly increased the anomaly correlation of Noah soil moisture with station measurements from 0.45 to 0.57 in the 0-10 cm layer. Time series at specific stations demonstrate the ability of SMOS DA to increase the dynamic range of soil moisture in a manner consistent with station measurements. Among the bias correction methods, the correction based on soil type performed best at bias reduction but also reduced correlations. The vegetation-based correction did not produce any significant differences compared to using a simple uniform correction curve.

Assimilation of SMOS Retrievals in the Land Information System

PubMed Central

Blankenship, Clay B.; Case, Jonathan L.; Zavodsky, Bradley T.; Crosson, William L.

2018-01-01

The Soil Moisture and Ocean Salinity (SMOS) satellite provides retrievals of soil moisture in the upper 5 cm with a 30-50 km resolution and a mission accuracy requirement of 0.04 cm3 cm−3. These observations can be used to improve land surface model soil moisture states through data assimilation. In this paper, SMOS soil moisture retrievals are assimilated into the Noah land surface model via an Ensemble Kalman Filter within the NASA Land Information System. Bias correction is implemented using Cumulative Distribution Function (CDF) matching, with points aggregated by either land cover or soil type to reduce sampling error in generating the CDFs. An experiment was run for the warm season of 2011 to test SMOS data assimilation and to compare assimilation methods. Verification of soil moisture analyses in the 0-10 cm upper layer and root zone (0-1 m) was conducted using in situ measurements from several observing networks in the central and southeastern United States. This experiment showed that SMOS data assimilation significantly increased the anomaly correlation of Noah soil moisture with station measurements from 0.45 to 0.57 in the 0-10 cm layer. Time series at specific stations demonstrate the ability of SMOS DA to increase the dynamic range of soil moisture in a manner consistent with station measurements. Among the bias correction methods, the correction based on soil type performed best at bias reduction but also reduced correlations. The vegetation-based correction did not produce any significant differences compared to using a simple uniform correction curve. PMID:29367795

Estimates of carbon allocation to ectomycorrhizal fungi in a temperate forest

NASA Astrophysics Data System (ADS)

Ouimette, A.; Ollinger, S. V.; Vadeboncoeur, M. A.; Hobbie, E. A.

2012-12-01

The capacity of temperate and boreal forests to grow and sequester carbon (C) is limited by the amount of available nitrogen (N) in soils. While the importance of N to carbon storage is well known, we lack a thorough understanding of the mechanisms of N acquisition and the belowground carbon investment required for trees to compete for N. Resolving these uncertainties is critical for predicting future carbon budgets, given expected changes in climate, N deposition, atmospheric CO2, and tree species distribution. Some of the greatest uncertainties surrounding belowground C-N interactions involve the symbiotic fungi that serve as an interface between trees and various forms of N they acquire. Nearly all temperate and boreal forest trees have associations with one of two types of fungi: ectomycorrhizal (ECM) or arbuscular mycorrhizal (AM) fungi. Both types of fungi provide trees with soil nitrogen and other nutrients necessary for growth and in return receive carbon (sugars) from trees. Understanding the differences between these fungal groups is important because they differ dramatically in their carbon requirements and in their ability to access different forms of N. ECM fungi have higher carbon demand, more extensive hyphae (fungal roots), and much stronger capabilities to break down soil organic matter than AM fungi. Despite their importance in the terrestrial C cycle, mycorrhizal fungi are distinctly absent from forest ecosystem C and N models, primarily due to a lack of quantitative data on carbon allocation to mycorrhizal fungi in forests. Quantifying carbon allocation to mycorrhizal fungi is inherently difficult given their small (microscopic) size and lack of specific quantitative biomarkers. Here we present simple measurements that make use of natural abundance N stable isotope data (δ15N) of plant and soil pools, as well as forest C and N budget data, to provide estimates of C allocation to ECM fungi across temperate forest stands with a range of soil N availabilities and species composition. Results show that the fraction of NPP allocated to ECM fungi is related to soil N availability and tree functional type (coniferous vs. broadleaf). These estimates of C allocation will help parameterize ecosystem models to specifically include ECM fungi.

The effect of soil type on the bioremediation of petroleum contaminated soils.

PubMed

Haghollahi, Ali; Fazaelipoor, Mohammad Hassan; Schaffie, Mahin

2016-09-15

In this research the bioremediation of four different types of contaminated soils was monitored as a function of time and moisture content. The soils were categorized as sandy soil containing 100% sand (type I), clay soil containing more than 95% clay (type II), coarse grained soil containing 68% gravel and 32% sand (type III), and coarse grained with high clay content containing 40% gravel, 20% sand, and 40% clay (type IV). The initially clean soils were contaminated with gasoil to the concentration of 100 g/kg, and left on the floor for the evaporation of light hydrocarbons. A full factorial experimental design with soil type (four levels), and moisture content (10 and 20%) as the factors was employed. The soils were inoculated with petroleum degrading microorganisms. Soil samples were taken on days 90, 180, and 270, and the residual total petroleum hydrocarbon (TPH) was extracted using soxhlet apparatus. The moisture content of the soils was kept almost constant during the process by intermittent addition of water. The results showed that the efficiency of bioremediation was affected significantly by the soil type (Pvalue < 0.05). The removal percentage was the highest (70%) for the sandy soil with the initial TPH content of 69.62 g/kg, and the lowest for the clay soil (23.5%) with the initial TPH content of 69.70 g/kg. The effect of moisture content on bioremediation was not statistically significant for the investigated levels. The removal percentage in the clay soil was improved to 57% (within a month) in a separate experiment by more frequent mixing of the soil, indicating low availability of oxygen as a reason for low degradation of hydrocarbons in the clay soil. Copyright © 2016 Elsevier Ltd. All rights reserved.

Sensitive PCR Detection of Meloidogyne arenaria, M. incognita, and M. javanica Extracted from Soil

PubMed Central

Qiu, Jinya Jack; Westerdahl, Becky B.; Anderson, Cindy; Williamson, Valerie M.

2006-01-01

We have developed a simple PCR assay protocol for detection of the root-knot nematode (RKN) species Meloidogyne arenaria, M. incognita, and M. javanica extracted from soil. Nematodes are extracted from soil using Baermann funnels and centrifugal flotation. The nematode-containing fraction is then digested with proteinase K, and a PCR assay is carried out with primers specific for this group of RKN and with universal primers spanning the ITS of rRNA genes. The presence of RKN J2 can be detected among large numbers of other plant-parasitic and free-living nematodes. The procedure was tested with several soil types and crops from different locations and was found to be sensitive and accurate. Analysis of unknowns and spiked soil samples indicated that detection sensitivity was the same as or higher than by microscopic examination. PMID:19259460

Survey of Microbial Enzymes in Soil, Water, and Plant Microenvironments

PubMed Central

Alves, Priscila Divina Diniz; Siqueira, Flávia de Faria; Facchin, Susanne; Horta, Carolina Campolina Rebello; Victória, Júnia Maria Netto; Kalapothakis, Evanguedes

2014-01-01

Detection of microbial enzymes in natural environments is important to understand biochemical activities and to verify the biotechnological potential of the microorganisms. In the present report, 346 isolates from soil, water, and plants were screened for enzyme production (caseinase, gelatinase, amylase, carboxymethyl cellulase, and esterase). Our results showed that 89.6% of isolates produced at least one tested enzyme. A predominance of amylase in soil samples, carboxymethyl cellulase in plants, as well as esterase and gelatinase in water was observed. Interesting enzymatic profiles were found in some microenvironments, suggesting specificity of available nutrients and/or natural selection. This study revealed the potential of microorganisms present in water, soil, and plant to produce important enzymes for biotechnological exploration. A predominance of certain enzymes was found, depending on the type of environmental sample. The distribution of microbial enzymes in soil, water and plants has been little exploited in previous reports. PMID:24847390

Turning soil survey data into digital soil maps in the Energy Region Eger Research Model Area

NASA Astrophysics Data System (ADS)

Pásztor, László; Dobos, Anna; Kürti, Lívia; Takács, Katalin; Laborczi, Annamária

2015-04-01

Agria-Innoregion Knowledge Centre of the Eszterházy Károly College has carried out targeted basic researches in the field of renewable energy sources and climate change in the framework of TÁMOP-4.2.2.A-11/1/KONV project. The project has covered certain issues, which require the specific knowledge of the soil cover; for example: (i) investigation of quantitative and qualitative characteristics of natural and landscape resources; (ii) determination of local amount and characteristics of renewable energy sources; (iii) natural/environmental risk analysis by surveying the risk factors. The Energy Region Eger Research Model Area consists of 23 villages and is located in North-Hungary, at the Western part of Bükkalja. Bükkalja is a pediment surface with erosional valleys and dense river network. The diverse morphology of this area results diversity in soil types and soil properties as well. There was large-scale (1:10,000 and 1:25,000 scale) soil mappings in this area in the 1960's and 1970's which provided soil maps, but with reduced spatial coverage and not with fully functional thematics. To achive the recent tasks (like planning suitable/optimal land-use system, estimating biomass production and development of agricultural and ecomonic systems in terms of sustainable regional development) new survey was planned and carried out by the staff of the College. To map the soils in the study area 10 to 22 soil profiles were uncovered per settlement in 2013 and 2014. Field work was carried out according to the FAO Guidelines for Soil Description and WRB soil classification system was used for naming soils. According to the general goal of soil mapping the survey data had to be spatially extended to regionalize the collected thematic local knowledge related to soil cover. Firstly three thematic maps were compiled by digital soil mapping methods: thickness of topsoil, genetic soil type and rate of surface erosion. High resolution digital elevation model, Earth observation imagery, geology and land cover maps were used as spatial ancillary environmental variables related to soil forming processes. Regression kriging (RK) has been used for the spatial inference of quantitative data (thickness of topsoil); classification and regression trees (CART) were applied for the spatial inference of category type information (genetic soil type and rate of surface erosion) with the aid of the available and properly preprocessed auxiliary co-variables. The applied spatial resolution was 25 meters. The deduced digital soil maps hopefully will significantly promote to plan sustainable economic model in the region which can provide protection and regeneration of local natural conditions and potentials for local inhabitants for a long time. Acknowledgement: Our work was supported by the Hungarian National Scientific Research Foundation (OTKA, Grant No. K105167) and TÁMOP-4.2.2.A-11/1/KONV project.

The Impact of Organo-Mineral Complexation on Mineral Weathering in the Soil Zone under Unsaturated Conditions

NASA Astrophysics Data System (ADS)

Michael, H. A.; Tan, F.; Yoo, K.; Imhoff, P. T.

2017-12-01

While organo-mineral complexes can protect organic matter (OM) from biodegradation, their impact on soil mineral weathering is not clear. Previous bench-scale experiments that focused on specific OM and minerals showed that the adsorption of OM to mineral surfaces accelerates the dissolution of some minerals. However, the impact of natural organo-mineral complexes on mineral dissolution under unsaturated conditions is not well known. In this study, soil samples prepared from an undisturbed forest site were used to determine mineral weathering rates under differing conditions of OM sorption to minerals. Two types of soil samples were generated: 1) soil with OM (C horizon soil from 84-100cm depth), and 2) soil without OM (the same soil as in 1) but with OM removed by heating to 350°for 24 h). Soil samples were column-packed and subjected to intermittent infiltration and drainage to mimic natural rainfall events. Each soil sample type was run in duplicate. The unsaturated condition was created by applying gas pressure to the column, and the unsaturated chemical weathering rates during each cycle were calculated from the effluent concentrations. During a single cycle, when applying the same gas pressure, soils with OM retained more moisture than OM-removed media, indicating increased water retention capacity under the impact of OM. This is consistent with the water retention data measured by evaporation experiments (HYPROP) and the dew point method (WP4C Potential Meter). Correspondingly, silicon (Si) denudation rates indicated that dissolution of silicate minerals was 2-4 times higher in OM soils, suggesting that organo-mineral complexes accelerate mineral dissolution under unsaturated conditions. When combining data from all cycles, the results showed that Si denudation rates were positively related to soil water content: denundation rate increased with increasing water content. Therefore, natural mineral chemical weathering under unsaturated conditions, while widely considered to be facilitated by biological and chemical activities, may also be affected by soil retention properties.

[Development of an analyzing system for soil parameters based on NIR spectroscopy].

PubMed

Zheng, Li-Hua; Li, Min-Zan; Sun, Hong

2009-10-01

A rapid estimation system for soil parameters based on spectral analysis was developed by using object-oriented (OO) technology. A class of SOIL was designed. The instance of the SOIL class is the object of the soil samples with the particular type, specific physical properties and spectral characteristics. Through extracting the effective information from the modeling spectral data of soil object, a map model was established between the soil parameters and its spectral data, while it was possible to save the mapping model parameters in the database of the model. When forecasting the content of any soil parameter, the corresponding prediction model of this parameter can be selected with the same soil type and the similar soil physical properties of objects. And after the object of target soil samples was carried into the prediction model and processed by the system, the accurate forecasting content of the target soil samples could be obtained. The system includes modules such as file operations, spectra pretreatment, sample analysis, calibrating and validating, and samples content forecasting. The system was designed to run out of equipment. The parameters and spectral data files (*.xls) of the known soil samples can be input into the system. Due to various data pretreatment being selected according to the concrete conditions, the results of predicting content will appear in the terminal and the forecasting model can be stored in the model database. The system reads the predicting models and their parameters are saved in the model database from the module interface, and then the data of the tested samples are transferred into the selected model. Finally the content of soil parameters can be predicted by the developed system. The system was programmed with Visual C++6.0 and Matlab 7.0. And the Access XP was used to create and manage the model database.

Comparative molecular analysis of chemolithoautotrophic bacterial diversity and community structure from coastal saline soils, Gujarat, India

PubMed Central

2012-01-01

Background Soils harbour high diversity of obligate as well as facultative chemolithoautotrophic bacteria that contribute significantly to CO2 dynamics in soil. In this study, we used culture dependent and independent methods to assess the community structure and diversity of chemolithoautotrophs in agricultural and coastal barren saline soils (low and high salinity). We studied the composition and distribution of chemolithoautotrophs by means of functional marker gene cbbL encoding large subunit of ribulose-1,5-bisphosphate carboxylase/oxygenase and a phylogenetic marker 16S rRNA gene. The cbbL form IA and IC genes associated with carbon fixation were analyzed to gain insight into metabolic potential of chemolithoautotrophs in three soil types of coastal ecosystems which had a very different salt load and sulphur content. Results In cbbL libraries, the cbbL form IA was retrieved only from high saline soil whereas form IC was found in all three soil types. The form IC cbbL was also amplified from bacterial isolates obtained from all soil types. A number of novel monophyletic lineages affiliated with form IA and IC phylogenetic trees were found. These were distantly related to the known cbbL sequences from agroecosystem, volcanic ashes and marine environments. In 16S rRNA clone libraries, the agricultural soil was dominated by chemolithoautotrophs (Betaproteobacteria) whereas photoautotrophic Chloroflexi and sulphide oxidizers dominated saline ecosystems. Environmental specificity was apparently visible at both higher taxonomic levels (phylum) and lower taxonomic levels (genus and species). The differentiation in community structure and diversity in three soil ecosystems was supported by LIBSHUFF (P = 0.001) and UniFrac. Conclusion This study may provide fundamentally new insights into the role of chemolithoautotrophic and photoautotrophic bacterial diversity in biochemical carbon cycling in barren saline soils. The bacterial communities varied greatly among the three sites, probably because of differences in salinity, carbon and sulphur contents. The cbbL form IA-containing sulphide-oxidizing chemolithotrophs were found only in high saline soil clone library, thus giving the indication of sulphide availability in this soil ecosystem. This is the first comparative study of the community structure and diversity of chemolithoautotrophic bacteria in coastal agricultural and saline barren soils using functional (cbbL) and phylogenetic (16S rDNA) marker genes. PMID:22834535

ARS-Media for Excel: A Spreadsheet Tool for Calculating Media Recipes Based on Ion-Specific Constraints

PubMed Central

Niedz, Randall P.

2016-01-01

ARS-Media for Excel is an ion solution calculator that uses “Microsoft Excel” to generate recipes of salts for complex ion mixtures specified by the user. Generating salt combinations (recipes) that result in pre-specified target ion values is a linear programming problem. Excel’s Solver add-on solves the linear programming equation to generate a recipe. Calculating a mixture of salts to generate exact solutions of complex ionic mixtures is required for at least 2 types of problems– 1) formulating relevant ecological/biological ionic solutions such as those from a specific lake, soil, cell, tissue, or organ and, 2) designing ion confounding-free experiments to determine ion-specific effects where ions are treated as statistical factors. Using ARS-Media for Excel to solve these two problems is illustrated by 1) exactly reconstructing a soil solution representative of a loamy agricultural soil and, 2) constructing an ion-based experiment to determine the effects of substituting Na+ for K+ on the growth of a Valencia sweet orange nonembryogenic cell line. PMID:27812202

ARS-Media for Excel: A Spreadsheet Tool for Calculating Media Recipes Based on Ion-Specific Constraints.

PubMed

Niedz, Randall P

2016-01-01

ARS-Media for Excel is an ion solution calculator that uses "Microsoft Excel" to generate recipes of salts for complex ion mixtures specified by the user. Generating salt combinations (recipes) that result in pre-specified target ion values is a linear programming problem. Excel's Solver add-on solves the linear programming equation to generate a recipe. Calculating a mixture of salts to generate exact solutions of complex ionic mixtures is required for at least 2 types of problems- 1) formulating relevant ecological/biological ionic solutions such as those from a specific lake, soil, cell, tissue, or organ and, 2) designing ion confounding-free experiments to determine ion-specific effects where ions are treated as statistical factors. Using ARS-Media for Excel to solve these two problems is illustrated by 1) exactly reconstructing a soil solution representative of a loamy agricultural soil and, 2) constructing an ion-based experiment to determine the effects of substituting Na+ for K+ on the growth of a Valencia sweet orange nonembryogenic cell line.

Cadmium background concentrations to establish reference quality values for soils of São Paulo State, Brazil.

PubMed

de Oliveira, Vinicius Henrique; de Abreu, Cleide Aparecida; Coelho, Ricardo Marques; Melo, Leônidas Carrijo Azevedo

2014-03-01

Proper assessment of soil cadmium (Cd) concentrations is essential to establish legislative limits. The present study aimed to assess background Cd concentrations in soils from the state of São Paulo, Brazil, and to correlate such concentrations with several soil attributes. The topsoil samples (n = 191) were assessed for total Cd contents and for other metals using the USEPA 3051A method. The background concentration was determined according to the third quartile (75th). Principal component analysis, Spearman correlation, and multiple regressions between Cd contents and other soil attributes (pH, cation exchange capacity (CEC), clay content, sum of bases, organic matter, and total Fe, Al, Zn, and Pb levels) were performed. The mean Cd concentration of all 191 samples was 0.4 mg kg(-1), and the background concentration was 0.5 mg kg(-1). After the samples were grouped by parent material (rock origin) and soil type, the background Cd content varied, i.e., soils from igneous, metamorphic, and sedimentary rocks harbored 1.5, 0.4, and 0.2 mg kg(-1) of Cd, respectively. The background Cd content in Oxisols (0.8 mg kg(-1)) was higher than in Ultisols (0.3 mg kg(-1)). Multiple regression demonstrated that Fe was primarily attributed to the natural Cd contents in the soils (R (2) = 0.79). Instead of a single Cd background concentration value representing all São Paulo soils, we propose that the concentrations should be specific for at least Oxisols and Ultisols, which are the primary soil types.

Microbiomes structure and diversity in different horizons of full soil profiles

NASA Astrophysics Data System (ADS)

Chernov, Timofey; Tkhakakhova, Azida; Zhelezova, Alena; Semenov, Mikhail; Kutovaya, Olga

2017-04-01

Topsoil is a most common object for soil metagenomic studies; sometimes soil profile is being formally split in layers by depth. However, Russian Soil Science School formulated the idea of soil profile as a complex of soil horizons, which can differ in their properties and genesis. In this research we analyzed 57 genetic soil horizons of 8 different soils from European part of Russia: Albeluvisol, Greyzemic Phaeozem, three Chermozems (different land use - till, fallow, wind-protecting tree line), Rhodic Cambisol, Haplic Kastanozem and Salic Solonetz (WRB classification). Sampling was performed from all genetic horizons in each soil profile starting from topsoil until subsoil. Total DNA was extracted and 16S rRNA sequencing was provided together with chemical analysis of soil (pH measurement, C and N contents, etc.). Structure and diversity of prokaryotic community are significantly different in those soil horizons, which chemical properties and processes of origin are contrasting with nearest horizons: Na-enriched horizon of Solonetz, eluvial horizon of Albeluvisol, plough pan of Agrochernozem. Actinobacteria were abundant in top horizons of soils in warm and dry climate, while Acidobacteria had the highest frequency in soils of moist and cold regions. Concerning Archaea, Thaumarchaeota prevailed in all studied soils. Their rate was higher in microbiomes of upper horizons of steppe soils and it was reducing with depth down the profile. Prokaryotic communities in Chernozems were clustered by soil horizons types: microbiomes of A (organic topsoil) and B (mineral) horizons formed non-overlapping clusters by principal component analysis, cluster formed by prokaryotic communities of transitional soil horizons (AB) take place between clusters of A and B horizons. Moreover, prokaryotic communities of A horizons differ from each other strongly, while microbiomes of B horizons formed a narrow small cluster. It must be explaned by more diverse conditions in upper A horizons. Thus, ecological differences between soil horizons are important factor of differentiation of prokaryotic communities in soil profile; their structure can be specific for horizon type. This study was supported by Russian Science Foundation, project no. 14-26-00079

Observing and modeling links between soil moisture, microbes and CH4 fluxes from forest soils

NASA Astrophysics Data System (ADS)

Christiansen, Jesper; Levy-Booth, David; Barker, Jason; Prescott, Cindy; Grayston, Sue

2017-04-01

Soil moisture is a key driver of methane (CH4) fluxes in forest soils, both of the net uptake of atmospheric CH4 and emission from the soil. Climate and land use change will alter spatial patterns of soil moisture as well as temporal variability impacting the net CH4 exchange. The impact on the resultant net CH4 exchange however is linked to the underlying spatial and temporal distribution of the soil microbial communities involved in CH4 cycling as well as the response of the soil microbial community to environmental changes. Significant progress has been made to target specific CH4 consuming and producing soil organisms, which is invaluable in order to understand the microbial regulation of the CH4 cycle in forest soils. However, it is not clear as to which extent soil moisture shapes the structure, function and abundance of CH4 specific microorganisms and how this is linked to observed net CH4 exchange under contrasting soil moisture regimes. Here we report on the results from a research project aiming to understand how the CH4 net exchange is shaped by the interactive effects soil moisture and the spatial distribution CH4 consuming (methanotrophs) and producing (methanogens). We studied the growing season variations of in situ CH4 fluxes, microbial gene abundances of methanotrophs and methanogens, soil hydrology, and nutrient availability in three typical forest types across a soil moisture gradient in a temperate rainforest on the Canadian Pacific coast. Furthermore, we conducted laboratory experiments to determine whether the net CH4 exchange from hydrologically contrasting forest soils responded differently to changes in soil moisture. Lastly, we modelled the microbial mediation of net CH4 exchange along the soil moisture gradient using structural equation modeling. Our study shows that it is possible to link spatial patterns of in situ net exchange of CH4 to microbial abundance of CH4 consuming and producing organisms. We also show that the microbial community responds different to environmental change dependent on the soil moisture regime. These results are important to include in future modeling efforts to predict changes in soil-atmosphere exchange of CH4 under global change.

Transformation of soil and vegetable conditions at oil production territories

NASA Astrophysics Data System (ADS)

Gatina, Evgeniia

2017-04-01

On the territory of modern oil production soil, vegetation, ecosystem conditions of the environment are significantly transformed. Researches have been conducted on the oil production territories located in a boreal coniferous forest natural zone from 2005 to 2015. Standard geobotanical and soil methods are used. Mechanical destruction of a plant cover, change of the water conditions, intake of oil products and salty waters in ecosystems, pollution of the atmosphere are considered as the major technology-related factors defining transformation of land ecosystems at operation of the oil field. Under the mechanical destruction of a plant cover the pioneer plant communities are formed. These communities are characterized by most reduced specific wealth with prevalence of types of meadow groups of plants and presence of types of wetland groups of plants. The biodiversity of biocenosis which are affected linear infrastructure facilities of oil production territories and change of the water conditions, decreases. It is observed decrease in species wealth, simplification of structure of communities. Under the salting of soils in ecosystems there is a decrease species diversity of communities to prevalence nitrophilous and meadow plant species. At the increased content of organic substances in the soils that is a consequence of intake of oil products, is characteristic increase in specific richness of communities, introduction of types of wetland and oligotrophic groups of plants in forest communities. Influence depends on distance to an influence source. In process of removal from a source of atmospheric pollution in forest communities there is a decrease in species diversity and complication of structure of community. It is caused by introduction of types of meadow groups of plants in ecotone sites of the forest communities located near a source of influence and restoration of structural features of forest communities in process of removal from an influence source. Operation of oil fields leads to introduction of the synanthropes relating to meadow and wetland groups of plants. Transformation depends on loading time. At the initial stage of operation of the oil field the synantropization of a plant cover leads to increase in species diversity. At long technogenic loading decrease in values of indexes of a biodiversity due to oppression of native species of plants is observed. Technology-related influence of oil fields is a regional factor of change of specific structure of plant communities. Modern oil production has to be followed by purposeful formation of the operated natural and technology-related ecosystems with adjustable parameters and higher stability in relation to a complex of technogenic oil-field influence.

Working parameters affecting earth-air heat exchanger (EAHE) system performance for passive cooling: A review

NASA Astrophysics Data System (ADS)

Darius, D.; Misaran, M. S.; Rahman, Md. M.; Ismail, M. A.; Amaludin, A.

2017-07-01

The study on the effect of the working parameters such as pipe material, pipe length, pipe diameter, depth of burial of the pipe, air flow rate and different types of soils on the thermal performance of earth-air heat exchanger (EAHE) systems is very crucial to ensure that thermal comfort can be achieved. In the past decade, researchers have performed studies to develop numerical models for analysis of EAHE systems. Until recently, two-dimensional models replaced the numerical models in the 1990s and in recent times, more advanced analysis using three-dimensional models, specifically the Computational Fluid Dynamics (CFD) simulation in the analysis of EAHE system. This paper reviews previous models used to analyse the EAHE system and working parameters that affects the earth-air heat exchanger (EAHE) thermal performance as of February 2017. Recent findings on the parameters affecting EAHE performance are also presented and discussed. As a conclusion, with the advent of CFD methods, investigational work have geared up to modelling and simulation work as it saves time and cost. Comprehension of the EAHE working parameters and its effect on system performance is largely established. However, the study on type of soil and its characteristics on the performance of EAHEs systems are surprisingly barren. Therefore, future studies should focus on the effect of soil characteristics such as moisture content, density of soil, and type of soil on the thermal performance of EAHEs system.

Climate, soil and plant functional types as drivers of global fine-root trait variation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Freschet, Grégoire T.; Valverde-Barrantes, Oscar J.; Tucker, Caroline M.

Ecosystem functioning relies heavily on below-ground processes, which are largely regulated by plant fine-roots and their functional traits. However, our knowledge of fine-root trait distribution relies to date on local- and regional-scale studies with limited numbers of species, growth forms and environmental variation. We compiled a world-wide fine-root trait dataset, featuring 1115 species from contrasting climatic areas, phylogeny and growth forms to test a series of hypotheses pertaining to the influence of plant functional types, soil and climate variables, and the degree of manipulation of plant growing conditions on species fine-root trait variation. Most particularly, we tested the competing hypothesesmore » that fine-root traits typical of faster return on investment would be most strongly associated with conditions of limiting versus favourable soil resource availability. We accounted for both data source and species phylogenetic relatedness. We demonstrate that: (i) Climate conditions promoting soil fertility relate negatively to fine-root traits favouring fast soil resource acquisition, with a particularly strong positive effect of temperature on fine-root diameter and negative effect on specific root length (SRL), and a negative effect of rainfall on root nitrogen concentration; (ii) Soil bulk density strongly influences species fine-root morphology, by favouring thicker, denser fine-roots; (iii) Fine-roots from herbaceous species are on average finer and have higher SRL than those of woody species, and N 2-fixing capacity positively relates to root nitrogen; and (iv) Plants growing in pots have higher SRL than those grown in the field. Synthesis. This study reveals both the large variation in fine-root traits encountered globally and the relevance of several key plant functional types and soil and climate variables for explaining a substantial part of this variation. Climate, particularly temperature, and plant functional types were the two strongest predictors of fine-root trait variation. High trait variation occurred at local scales, suggesting that wide-ranging below-ground resource economics strategies are viable within most climatic areas and soil conditions.« less

Climate, soil and plant functional types as drivers of global fine-root trait variation

DOE PAGES

Freschet, Grégoire T.; Valverde-Barrantes, Oscar J.; Tucker, Caroline M.; ...

2017-03-08

Ecosystem functioning relies heavily on below-ground processes, which are largely regulated by plant fine-roots and their functional traits. However, our knowledge of fine-root trait distribution relies to date on local- and regional-scale studies with limited numbers of species, growth forms and environmental variation. We compiled a world-wide fine-root trait dataset, featuring 1115 species from contrasting climatic areas, phylogeny and growth forms to test a series of hypotheses pertaining to the influence of plant functional types, soil and climate variables, and the degree of manipulation of plant growing conditions on species fine-root trait variation. Most particularly, we tested the competing hypothesesmore » that fine-root traits typical of faster return on investment would be most strongly associated with conditions of limiting versus favourable soil resource availability. We accounted for both data source and species phylogenetic relatedness. We demonstrate that: (i) Climate conditions promoting soil fertility relate negatively to fine-root traits favouring fast soil resource acquisition, with a particularly strong positive effect of temperature on fine-root diameter and negative effect on specific root length (SRL), and a negative effect of rainfall on root nitrogen concentration; (ii) Soil bulk density strongly influences species fine-root morphology, by favouring thicker, denser fine-roots; (iii) Fine-roots from herbaceous species are on average finer and have higher SRL than those of woody species, and N 2-fixing capacity positively relates to root nitrogen; and (iv) Plants growing in pots have higher SRL than those grown in the field. Synthesis. This study reveals both the large variation in fine-root traits encountered globally and the relevance of several key plant functional types and soil and climate variables for explaining a substantial part of this variation. Climate, particularly temperature, and plant functional types were the two strongest predictors of fine-root trait variation. High trait variation occurred at local scales, suggesting that wide-ranging below-ground resource economics strategies are viable within most climatic areas and soil conditions.« less

Identification and classification of structural soil conservation measures based on very high resolution stereo satellite data.

PubMed

Eckert, Sandra; Tesfay Ghebremicael, Selamawit; Hurni, Hans; Kohler, Thomas

2017-05-15

Land degradation affects large areas of land around the globe, with grave consequences for those living off the land. Major efforts are being made to implement soil and water conservation measures that counteract soil erosion and help secure vital ecosystem services. However, where and to what extent such measures have been implemented is often not well documented. Knowledge about this could help to identify areas where soil and water conservation measures are successfully supporting sustainable land management, as well as areas requiring urgent rehabilitation of conservation structures such as terraces and bunds. This study explores the potential of the latest satellite-based remote sensing technology for use in assessing and monitoring the extent of existing soil and water conservation structures. We used a set of very high resolution stereo Geoeye-1 satellite data, from which we derived a detailed digital surface model as well as a set of other spectral, terrain, texture, and filtered information layers. We developed and applied an object-based classification approach, working on two segmentation levels. On the coarser level, the aim was to delimit certain landscape zones. Information about these landscape zones is useful in distinguishing different types of soil and water conservation structures, as each zone contains certain specific types of structures. On the finer level, the goal was to extract and identify different types of linear soil and water conservation structures. The classification rules were based mainly on spectral, textural, shape, and topographic properties, and included object relationships. This approach enabled us to identify and separate from other classes the majority (78.5%) of terraces and bunds, as well as most hillside terraces (81.25%). Omission and commission errors are similar to those obtained by the few existing studies focusing on the same research objective but using different types of remotely sensed data. Based on our results, we estimate that the construction of the conservation structures in our study area in Eritrea required over 300,000 person-days of work, which underlines the huge efforts involved in soil and water conservation. Copyright © 2017 Elsevier Ltd. All rights reserved.

Influence of Soil Properties on Soldierless Termite Distribution.

PubMed

Bourguignon, Thomas; Drouet, Thomas; Šobotník, Jan; Hanus, Robert; Roisin, Yves

2015-01-01

In tropical rainforests, termites constitute an important part of the soil fauna biomass, and as for other soil arthropods, variations in soil composition create opportunities for niche partitioning. The aim of this study was twofold: first, we tested whether soil-feeding termite species differ in the foraging substrate; second, we investigated whether soil-feeding termites select their foraging sites to enhance nutrients intake. To do so, we collected termites and analysed the composition and structure of their feeding substrates. Although Anoplotermes-group members are all considered soil-feeders, our results show that some species specifically feed on abandoned termite nests and very rotten wood, and that this substrate selection is correlated with previous stable isotope analyses, suggesting that one component of niche differentiation among species is substrate selection. Our results show that the composition and structure of bare soils on which different termite species foraged do not differ, suggesting that there is no species specialization for a particular type of bare soil. Finally, the bare soil on which termites forage does not differ from random soil samples. Overall, our results suggest that few species of the Anoplotermes-group are specialized toward substrates rich in organic matter, but that the vast majority forage on soil independently of its structural and chemical composition, being ecologically equivalent for this factor.

Viral impacts on microbial carbon cycling in thawing permafrost soils

NASA Astrophysics Data System (ADS)

Trubl, G. G.; Roux, S.; Bolduc, B.; Jang, H. B.; Emerson, J. B.; Solonenko, N.; Li, F.; Solden, L. M.; Vik, D. R.; Wrighton, K. C.; Saleska, S. R.; Sullivan, M. B.; Rich, V. I.

2017-12-01

Permafrost contains 30-50% of global soil carbon (C) and is rapidly thawing. While the fate of this C is unknown, it will be shaped in part by microbes and their associated viruses, which modulate host activities via mortality and metabolic control. To date, viral research in soils has been outpaced by that in aquatic environments, due to the technical challenges of accessing viruses as well as the dramatic physicochemical heterogeneity in soils. Here, we describe advances in soil viromics from our research on permafrost-associated soils, and their implications for associated terrestrial C cycling. First, we optimized viral resuspension-DNA extraction methods for a range of soil types. Second, we applied cutting-edge viral-specific informatics methods to recover viral populations, define their gene content, connect them to potential hosts, and analyze their relationships to environmental parameters. A total of 781 viral populations were recovered from size-fractionated virus samples of three soils along a permafrost thaw gradient. Ecological analyses revealed endemism as recovered viral populations were largely unique to each habitat and unlike those in aquatic communities. Genome- and network-based classification assigned these viruses into 226 viral clusters (VCs; genus-level taxonomy), 55% of which were novel. This increases the number of VCs by a third and triples the number of soil viral populations in the RefSeq database (currently contains 256 VCs and 316 soil viral populations). Genomic analyses revealed 85% of the genes were functionally unknown, though 5% of the annotatable genes contained C-related auxiliary metabolic genes (AMGs; e.g. glycoside hydrolases). Using sequence-based features and microbial population genomes, we were able to in silico predict hosts for 30% of the viral populations. The identified hosts spanned 3 phyla and 6 genera but suggested these viruses have species-specific host ranges as >80% of hosts for a given virus were in the same species. Several identified hosts (e.g. Acidobacterium) are dominant community members that play major roles in C cycling through organic matter degradation. Together these findings show that permafrost viruses play a major role in the fate of soil C through infection of key hosts and metabolic reprogramming using specific C cycling AMGs.

Rhizosphere Competence and Biocontrol Effect of Pseudomonas sp. RU47 Independent from Plant Species and Soil Type at the Field Scale.

PubMed

Schreiter, Susanne; Babin, Doreen; Smalla, Kornelia; Grosch, Rita

2018-01-01

Biocontrol inoculants often show inconsistency in their efficacy at field scale and the reason for this remains often unclear. A high rhizosphere competence of inoculant strains is assumed to be a key factor for successful biocontrol effects as the biocontrol strain has to compete with the indigenous microbial community in the rhizosphere. It is known that many factors, among them plant species and soil type shape the rhizosphere microbial community composition. However, microbial community composition in the rhizosphere can also be influenced by the presence of a pathogen. We hypothesized that plant species, soil type, and a pathogen affect the rhizosphere competence of a biocontrol strain and its biocontrol effect against a soil-borne pathogen. To test the hypothesis, we used an experimental plot system with three soil types (diluvial sand, alluvial loam, loess loam) kept under similar agricultural management at the same field site for 12 years. We investigate the rhizosphere competence of Pseudomonas sp. RU47 in two plant species (potato and lettuce) and its biocontrol effect against Rhizoctonia diseases. The colonization density of a rifampicin resistant mutant of RU47 in the rhizosphere of both crops was evaluated by plate counts. Bacterial community compositions were analyzed by denaturing gradient gel electrophoresis (DGGE) of 16S rRNA gene fragments amplified from total community DNA. The inoculant RU47 was able to colonize the rhizosphere of both model crops in a sufficient density and to reduce disease severity of black scurf on potato and bottom rot on lettuce in all three soils. DGGE indicated that RU47 affected the bacterial community composition stronger in the rhizosphere of lettuce than in the potato rhizosphere. In contrast, the effect of the pathogen Rhizoctonia solani on the bacterial community was much stronger in the rhizosphere of potato than in the lettuce rhizosphere. A significant effect of RU47 on the Pseudomonas -specific gacA fingerprints of the rhizosphere was only observed in lettuce in alluvial soil. The soil type and plant species independent biocontrol effects of RU47 and its minor influence on the indigenous bacterial community composition might be important criteria for the registration and use of RU47 as biocontrol strain.

Rhizosphere Competence and Biocontrol Effect of Pseudomonas sp. RU47 Independent from Plant Species and Soil Type at the Field Scale

PubMed Central

Schreiter, Susanne; Babin, Doreen; Smalla, Kornelia; Grosch, Rita

2018-01-01

Biocontrol inoculants often show inconsistency in their efficacy at field scale and the reason for this remains often unclear. A high rhizosphere competence of inoculant strains is assumed to be a key factor for successful biocontrol effects as the biocontrol strain has to compete with the indigenous microbial community in the rhizosphere. It is known that many factors, among them plant species and soil type shape the rhizosphere microbial community composition. However, microbial community composition in the rhizosphere can also be influenced by the presence of a pathogen. We hypothesized that plant species, soil type, and a pathogen affect the rhizosphere competence of a biocontrol strain and its biocontrol effect against a soil-borne pathogen. To test the hypothesis, we used an experimental plot system with three soil types (diluvial sand, alluvial loam, loess loam) kept under similar agricultural management at the same field site for 12 years. We investigate the rhizosphere competence of Pseudomonas sp. RU47 in two plant species (potato and lettuce) and its biocontrol effect against Rhizoctonia diseases. The colonization density of a rifampicin resistant mutant of RU47 in the rhizosphere of both crops was evaluated by plate counts. Bacterial community compositions were analyzed by denaturing gradient gel electrophoresis (DGGE) of 16S rRNA gene fragments amplified from total community DNA. The inoculant RU47 was able to colonize the rhizosphere of both model crops in a sufficient density and to reduce disease severity of black scurf on potato and bottom rot on lettuce in all three soils. DGGE indicated that RU47 affected the bacterial community composition stronger in the rhizosphere of lettuce than in the potato rhizosphere. In contrast, the effect of the pathogen Rhizoctonia solani on the bacterial community was much stronger in the rhizosphere of potato than in the lettuce rhizosphere. A significant effect of RU47 on the Pseudomonas-specific gacA fingerprints of the rhizosphere was only observed in lettuce in alluvial soil. The soil type and plant species independent biocontrol effects of RU47 and its minor influence on the indigenous bacterial community composition might be important criteria for the registration and use of RU47 as biocontrol strain. PMID:29449832

Changes in the dissolved organic matter leaching from soil under severe temperature and N-deposition.

PubMed

Nguyen, Hang Vo-Minh; Choi, Jung Hyun

2015-06-01

In this study, we conducted growth chamber experiments using three types of soil (wetland, rice paddy, and forest) under the conditions of a severe increase in the temperature and N-deposition in order to investigate how extreme weather influences the characteristics of the dissolved organic matter (DOM) leaching from different soil types. This leachate controls the quantity and quality of DOM in surface water systems. After 5 months of incubation, the dissolved organic carbon (DOC) concentrations decreased in the range of 21.1 to 88.9 %, while the specific UV absorption (SUVA) values increased substantially in the range of 19.9 to 319.9 % for all of the samples. Higher increases in the SUVA values were observed at higher temperatures, whereas the opposite trend was observed for samples with N-addition. The parallel factor analysis (PARAFAC) results showed that four fluorescence components: terrestrial humic-like (component 1 (C1)), microbial humic-like (component 2 (C2)), protein-like (component 3 (C3)), and anthropogenic humic-like (component 4 (C4)) constituted the fluorescence matrices of soil samples. During the experiment, labile DOM from the soils was consumed and transformed into resistant aromatic carbon structures and less biodegradable components via microbial processes. The principle component analysis (PCA) results indicated that severe temperatures and N-deposition could enhance the contribution of the aromatic carbon compounds and humic-like components in the soil samples.

Fire effects on temperate forest soil C and N storage.

PubMed

Nave, Lucas E; Vance, Eric D; Swanston, Christopher W; Curtis, Peter S

2011-06-01

Temperate forest soils store globally significant amounts of carbon (C) and nitrogen (N). Understanding how soil pools of these two elements change in response to disturbance and management is critical to maintaining ecosystem services such as forest productivity, greenhouse gas mitigation, and water resource protection. Fire is one of the principal disturbances acting on forest soil C and N storage and is also the subject of enormous management efforts. In the present article, we use meta-analysis to quantify fire effects on temperate forest soil C and N storage. Across a combined total of 468 soil C and N response ratios from 57 publications (concentrations and pool sizes), fire had significant overall effects on soil C (-26%) and soil N (-22%). The impacts of fire on forest floors were significantly different from its effects on mineral soils. Fires reduced forest floor C and N storage (pool sizes only) by an average of 59% and 50%, respectively, but the concentrations of these two elements did not change. Prescribed fires caused smaller reductions in forest floor C and N storage (-46% and -35%) than wildfires (-67% and -69%), and the presence of hardwoods also mitigated fire impacts. Burned forest floors recovered their C and N pools in an average of 128 and 103 years, respectively. Among mineral soils, there were no significant changes in C or N storage, but C and N concentrations declined significantly (-11% and -12%, respectively). Mineral soil C and N concentrations were significantly affected by fire type, with no change following prescribed burns, but significant reductions in response to wildfires. Geographic variation in fire effects on mineral soil C and N storage underscores the need for region-specific fire management plans, and the role of fire type in mediating C and N shifts (especially in the forest floor) indicates that averting wildfires through prescribed burning is desirable from a soils perspective.

Isolation, Characterization, and Transfer of Cryptic Gene-Mobilizing Plasmids in the Wheat Rhizosphere

PubMed Central

van Elsas, Jan Dirk; McSpadden Gardener, Brian B.; Wolters, Anneke C.; Smit, Eric

1998-01-01

A set of self-transmissible plasmids with IncQ plasmid-mobilizing capacity was isolated by triparental exogenous isolation from the wheat rhizosphere with an Escherichia coli IncQ plasmid host and a Ralstonia eutropha recipient. Three plasmids of 38 to 45 kb, denoted pIPO1, pIPO2, and pIPO3, were selected for further study. No selectable traits (antibiotic or heavy-metal resistance) were identified in these plasmids. The plasmids were characterized by replicon typing via PCR and hybridization with replicon-specific probes and other hybridizations. pIPO1 and pIPO3 were similar to each other, whereas pIPO2 was different. None of these plasmids belonged to any known incompatibility group. pIPO2 was selected for further work, and a mini-Tn5-tet transposon was inserted to confer selectability. Plasmid pIPO2 had a broad IncQ plasmid mobilization and self-transfer range among the alpha, beta, and gamma subclasses of the Proteobacteria but did not show productive transfer to gram-positive bacteria. Plasmid pIPO2 mobilized IncQ plasmid pIE723 from Pseudomonas fluorescens to diverse indigenous proteobacteria in the rhizosphere of field-grown wheat. Transfer of pIE723 to indigenous bacteria was not observed in the absence of added pIPO2. A specific PCR primer system and a probe were developed for the detection of pIPO2-type plasmids in soil and rhizosphere. Analysis of soil DNA provided evidence for the presence of pIPO2 in inoculated wheat rhizosphere soil in the field study, as well as in the rhizosphere of uninoculated wheat plants growing in soil microcosms. The system failed to identify major reservoirs of pIPO2 in a variety of other soils. PMID:9501428

Land-use change and soil type are drivers of fungal and archaeal communities in the Pampa biome.

PubMed

Lupatini, Manoeli; Jacques, Rodrigo Josemar Seminoti; Antoniolli, Zaida Inês; Suleiman, Afnan Khalil Ahmad; Fulthorpe, Roberta R; Roesch, Luiz Fernando Würdig

2013-02-01

The current study aimed to test the hypothesis that both land-use change and soil type are responsible for the major changes in the fungal and archaeal community structure and functioning of the soil microbial community in Brazilian Pampa biome. Soil samples were collected at sites with different land-uses (native grassland, native forest, Eucalyptus and Acacia plantation, soybean and watermelon field) and in a typical toposequence in Pampa biome formed by Paleudult, Albaqualf and alluvial soils. The structure of soil microbial community (archaeal and fungal) was evaluated by ribosomal intergenic spacer analysis and soil functional capabilities were measured by microbial biomass carbon and metabolic quotient. We detected different patterns in microbial community driven by land-use change and soil type, showing that both factors are significant drivers of fungal and archaeal community structure and biomass and microbial activity. Fungal community structure was more affected by land-use and archaeal community was more affected by soil type. Irrespective of the land-use or soil type, a large percentage of operational taxonomic unit were shared among the soils. We accepted the hypothesis that both land-use change and soil type are drivers of archaeal and fungal community structure and soil functional capabilities. Moreover, we also suggest the existence of a soil microbial core.

Soil Type Has a Stronger Role than Dipterocarp Host Species in Shaping the Ectomycorrhizal Fungal Community in a Bornean Lowland Tropical Rain Forest

PubMed Central

Essene, Adam L.; Shek, Katherine L.; Lewis, J. D.; Peay, Kabir G.; McGuire, Krista L.

2017-01-01

The role that mycorrhizal fungal associations play in the assembly of long-lived tree communities is poorly understood, especially in tropical forests, which have the highest tree diversity of any ecosystem. The lowland tropical rain forests of Southeast Asia are characterized by high levels of species richness within the family Dipterocarpaceae, the entirety of which has been shown to form obligate ectomycorrhizal (ECM) fungal associations. Differences in ECM assembly between co-occurring species of dipterocarp have been suggested, but never tested in adult trees, as a mechanism for maintaining the coexistence of closely related tree species in this family. Testing this hypothesis has proven difficult because the assembly of both dipterocarps and their ECM associates co-varies with the same edaphic variables. In this study, we used high-throughput DNA sequencing of soils and Sanger sequencing of root tips to evaluate how ECM fungi were structured within and across a clay–sand soil nutrient ecotone in a mixed-dipterocarp rain forest in Malaysian Borneo. We compared assembly patterns of ECM fungi in bulk soil to ECM root tips collected from three ecologically distinct species of dipterocarp. This design allowed us to test whether ECM fungi are more strongly structured by soil type or host specificity. As with previous studies of ECM fungi on this plot, we observed that clay vs. sand soil type strongly structured both the bulk soil and root tip ECM fungal communities. However, we also observed significantly different ECM communities associated with two of the three dipterocarp species evaluated on this plot. These results suggest that ECM fungal assembly on these species is shaped by a combination of biotic and abiotic factors, and that the soil edaphic niche occupied by different dipterocarp species may be mediated by distinct ECM fungal assemblages. PMID:29163567

Adhesion of bacterial pathogens to soil colloidal particles: influences of cell type, natural organic matter, and solution chemistry.

PubMed

Zhao, Wenqiang; Walker, Sharon L; Huang, Qiaoyun; Cai, Peng

2014-04-15

Bacterial adhesion to granular soil particles is well studied; however, pathogen interactions with naturally occurring colloidal particles (<2 μm) in soil has not been investigated. This study was developed to identify the interaction mechanisms between model bacterial pathogens and soil colloids as a function of cell type, natural organic matter (NOM), and solution chemistry. Specifically, batch adhesion experiments were conducted using NOM-present, NOM-stripped soil colloids, Streptococcus suis SC05 and Escherichia coli WH09 over a wide range of solution pH (4.0-9.0) and ionic strength (IS, 1-100 mM KCl). Cell characterization techniques, Freundlich isotherm, and Derjaguin-Landau-Verwey-Overbeek (DLVO) theory (sphere-sphere model) were utilized to quantitatively determine the interactions between cells and colloids. The adhesion coefficients (Kf) of S. suis SC05 to NOM-present and NOM-stripped soil colloids were significantly higher than E. coli WH09, respectively. Similarly, Kf values of S. suis SC05 and E. coli WH09 adhesion to NOM-stripped soil colloids were greater than those colloids with NOM-present, respectively, suggesting NOM inhibits bacterial adhesion. Cell adhesion to soil colloids declined with increasing pH and enhanced with rising IS (1-50 mM). Interaction energy calculations indicate these adhesion trends can be explained by DLVO-type forces, with S. suis SC05 and E. coli WH09 being weakly adhered in shallow secondary energy minima via polymer bridging and charge heterogeneity. S. suis SC05 adhesion decreased at higher IS 100 mM, which is attributed to the change of hydrophobic effect and steric repulsion resulted from the greater presence of extracellular polymeric substances (EPS) on S. suis SC05 surface as compared to E. coli WH09. Hence, pathogen adhesion to the colloidal material is determined by a combination of DLVO, charge heterogeneity, hydrophobic and polymer interactions as a function of solution chemistry. Copyright © 2014 Elsevier Ltd. All rights reserved.

The History of Electromagnetic Induction Techniques in Soil Survey

NASA Astrophysics Data System (ADS)

Brevik, Eric C.; Doolittle, Jim

2014-05-01

Electromagnetic induction (EMI) has been used to characterize the spatial variability of soil properties since the late 1970s. Initially used to assess soil salinity, the use of EMI in soil studies has expanded to include: mapping soil types; characterizing soil water content and flow patterns; assessing variations in soil texture, compaction, organic matter content, and pH; and determining the depth to subsurface horizons, stratigraphic layers or bedrock, among other uses. In all cases the soil property being investigated must influence soil apparent electrical conductivity (ECa) either directly or indirectly for EMI techniques to be effective. An increasing number and diversity of EMI sensors have been developed in response to users' needs and the availability of allied technologies, which have greatly improved the functionality of these tools. EMI investigations provide several benefits for soil studies. The large amount of georeferenced data that can be rapidly and inexpensively collected with EMI provides more complete characterization of the spatial variations in soil properties than traditional sampling techniques. In addition, compared to traditional soil survey methods, EMI can more effectively characterize diffuse soil boundaries and identify included areas of dissimilar soils within mapped soil units, giving soil scientists greater confidence when collecting spatial soil information. EMI techniques do have limitations; results are site-specific and can vary depending on the complex interactions among multiple and variable soil properties. Despite this, EMI techniques are increasingly being used to investigate the spatial variability of soil properties at field and landscape scales.

Mineral Control of Soil Carbon Dynamics in Forest Soils: A Lithosequence Under Ponderosa Pine

NASA Astrophysics Data System (ADS)

Heckman, K. A.; Welty-Bernard, A.; Rasmussen, C.; Schwartz, E.; Chorover, J.

2008-12-01

The role of soil organic carbon in regulating atmospheric CO2 concentration has spurred interest in both quantifying existing soil C stocks and modeling the behavior of soil C under climate change scenarios. Soil parent material exerts direct control over soil organic carbon content through its influence on soil pH and mineral composition. Soil acidity and mineral composition also influence soil microbial community composition and activity, thereby controlling soil respiration rates and microbial biomass size. We sampled a lithosequence of four parent materials (rhyolite, granite, basalt, limestone) under Pinus ponderosa to examine the effects of soil mineralogy and acidity on soil organic carbon content and soil microbial community. Three soil profiles were examined on each parent material and analyzed by X-ray diffraction, pH, selective dissolution, C and N content, and 13C signature. Soils from each of the four parent materials were incubated for 40 days, and microbial communities were compared on the basis of community composition (as determined through T-RFLP analysis), specific metabolic activity, biomass, δ13C of respired CO2, and cumulative amount of C mineralized over the course of the incubation. Soil C content varied significantly among soils of different parent material, and was strongly and positively associated with the abundance of Al-humus complexes r2 = 0.71; P < 0.0001, Fe-humus complexes r2 = 0.74; P = 0.0003, and crystalline Fe-oxide content r2 = 0.63; P = 0.0023. Microbial community composition varied significantly among soils and showed strong associations with soil pH 1:1 in KCl; r2 = 0.87; P < 0.0001, concentration of exchangeable Al r2 = 0.81; P < 0.0001, amorphous Fe oxide content r2 = 0.59; P < 0.004, and Al-humus content r2 = 0.35; P < 0.04. Mineralization rates, biomass and δ13C of respired CO2 differed among parent materials, and also varied with incubation time as substrate quality and N availability changed. The results demonstrate that within a specific ecosystem type, soil parent material exerts significant control over the lability and bioavailability of soil C and soil microbial community composition. We suggest that soil parent material and mineralogy are critical parameters for predicting soil C dynamics and recalcitrance of soil C stocks.

Towards a theory of ecotone resilience: coastal vegetation on a salinity gradient.

PubMed

Jiang, Jiang; Gao, Daozhou; DeAngelis, Donald L

2012-08-01

Ecotones represent locations where vegetation change is likely to occur as a result of climate and other environmental changes. Using a model of an ecotone vulnerable to such future changes, we estimated the resilience of the ecotone to disturbances. The specific ecotone is that between two different vegetation types, salinity-tolerant and salinity-intolerant, along a gradient in groundwater salinity. In the case studied, each vegetation type, through soil feedback loops, promoted local soil salinity levels that favor itself in competition with the other type. Bifurcation analysis was used to study the system of equations for the two vegetation types and soil salinity. Alternative stable equilibria, one for salinity-tolerant and one for salinity intolerant vegetation, were shown to exist over a region of the groundwater salinity gradient, bounded by two bifurcation points. This region was shown to depend sensitively on parameters such as the rate of upward infiltration of salinity from groundwater into the soil due to evaporation. We showed also that increasing diffusion rates of vegetation can lead to shrinkage of the range between the two bifurcation points. Sharp ecotones are typical of salt-tolerant vegetation (mangroves) near the coastline and salt-intolerant vegetation inland, even though the underlying elevation and groundwater salinity change very gradually. A disturbance such as an input of salinity to the soil from a storm surge could upset this stable boundary, leading to a regime shift of salinity-tolerant vegetation inland. We showed, however, that, for our model as least, a simple pulse disturbance would not be sufficient; the salinity would have to be held at a high level, as a 'press', for some time. The approach used here should be generalizable to study the resilience of a variety of ecotones to disturbances. Published by Elsevier Inc.

Towards a theory of ecotone resilience: coastal vegetation on a salinity gradient

USGS Publications Warehouse

Jiang, Jiang; Gao, Daozhou; DeAngelis, Donald L.

2012-01-01

Ecotones represent locations where vegetation change is likely to occur as a result of climate and other environmental changes. Using a model of an ecotone vulnerable to such future changes, we estimated the resilience of the ecotone to disturbances. The specific ecotone is that between two different vegetation types, salinity-tolerant and salinity-intolerant, along a gradient in groundwater salinity. In the case studied, each vegetation type, through soil feedback loops, promoted local soil salinity levels that favor itself in competition with the other type. Bifurcation analysis was used to study the system of equations for the two vegetation types and soil salinity. Alternative stable equilibria, one for salinity-tolerant and one for salinity intolerant vegetation, were shown to exist over a region of the groundwater salinity gradient, bounded by two bifurcation points. This region was shown to depend sensitively on parameters such as the rate of upward infiltration of salinity from groundwater into the soil due to evaporation. We showed also that increasing diffusion rates of vegetation can lead to shrinkage of the range between the two bifurcation points. Sharp ecotones are typical of salt-tolerant vegetation (mangroves) near the coastline and salt-intolerant vegetation inland, even though the underlying elevation and groundwater salinity change very gradually. A disturbance such as an input of salinity to the soil from a storm surge could upset this stable boundary, leading to a regime shift of salinity-tolerant vegetation inland. We showed, however, that, for our model as least, a simple pulse disturbance would not be sufficient; the salinity would have to be held at a high level, as a 'press', for some time. The approach used here should be generalizable to study the resilience of a variety of ecotones to disturbances.

The tri-soil experiment: do plants discriminate among vegetation soil types?

USDA-ARS?s Scientific Manuscript database

We tested if rooting mass and root nutrient uptake of cheatgrass (Bromus tectorum) or creeping wildrye (Leymus triticoides) were influenced by vegetation soil type. Three soil types (A horizons), similar in gross physical and chemical properties, were freshly-collected. The soils varied in the veget...

Decontamination of Petroleum-Contaminated Soils Using The Electrochemical Technique: Remediation Degree and Energy Consumption.

PubMed

Streche, Constantin; Cocârţă, Diana Mariana; Istrate, Irina-Aura; Badea, Adrian Alexandru

2018-02-19

Currently, there are different remediation technologies for contaminated soils, but the selection of the best technology must be not only the treatment efficiency but also the energy consumption (costs) during its application. This paper is focused on assessing energy consumption related to the electrochemical treatment of polluted soil with petroleum hydrocarbons. In the framework of a research project, two types of experiments were conducted using soil that was artificially contaminated with diesel fuel at the same level of contamination. The experimental conditions considered for each experiment were: different amounts of contaminated soils (6 kg and 18 kg, respectively), the same current intensity level (0.25A and 0.5A), three different contamination degrees (1%, 2.5% and 5%) and the same time for application of the electrochemical treatment. The remediation degree concerning the removal of petroleum hydrocarbons from soil increased over time by approximately 20% over 7 days. With regard to energy consumption, the results revealed that with an increase in the quantity of treated soil of approximately three times, the specific energy consumption decreased from 2.94 kWh/kg treated soil to 1.64 kWh/kg treated soil.

Prediction of the effects of soil-based countermeasures on soil solution chemistry of soils contaminated with radiocesium using the hydrogeochemical code PHREEQC.

PubMed

Hormann, Volker; Kirchner, Gerald

2002-04-22

For agriculturally used areas, which are contaminated by the debris from a nuclear accident, the use of chemical amendmends (e.g. potassium chloride and lime) is among the most common soil-based countermeasures. These countermeasures are intended to reduce the plant uptake of radionuclides (mainly 137Cs and 90Sr) by competitive inhibition by chemically similar ions. So far, the impacts of countermeasures on soil solution composition - and thus, their effectiveness - have almost exclusively been established experimentally, since they depend on mineral composition and chemical characteristics of the soil affected. In this study, which focuses on caesium contamination, the well-established code PHREEQC was used as a geochemical model to calculate the changes in the ionic compositions of soil solutions, which result from the application of potassium or ammonium in batch equilibrium experiments. The simple ion exchange model used by PHREEQC was improved by taking into account selective sorption of Cs+, NH4+ and K+ by clay minerals. Calculations were performed with three different initial soil solution compositions, corresponding to particular soil types (loam, sand, peat). For loamy and sandy soils, our calculational results agree well with experimental data reported by Nisbet (Effectiveness of soil-based countermeasures six months and one year after contamination of five diverse soil types with caesium-134 and strontium-90. Contract Report NRPB-M546, National Radiation Protection Board, Chilton, 1995.). For peat, discrepancies were found indicating that for organic soils a reliable set of exchange constants of the relevant cations still has to be determined experimentally. For cesium, however, these discrepancies almost disappeared if selective sites were assumed to be inaccessible. Additionally, results of sensitivity analyses are presented by which the influence of the main soil parameters on Cs+ concentrations in solution after soil treatment has been systematically studied. It is shown that calculating the impacts of soil-based chemical countermeasures on soil solution chemistry using geochemical codes such as PHREEQC offers an attractive alternative to establishing these impacts by often time-consuming and site-specific experiments.

On the role of soil fauna in providing soil functions - a meta study

NASA Astrophysics Data System (ADS)

Lang, Birgit; Russell, David J.; Vogel, Hans-Jörg; Wollschläger, Ute

2017-04-01

Fertile soils are fundamental for the production of biomass and therefore for the provision of goods such as food or fuel. However, soils are threatened by e.g. land degradation, but once lost their functionality cannot simply be replaced as soils are complex systems developed over long time periods. Thus, to develop strategies for sustainable soil use and management, we need a comprehensive functional understanding of soil systems. To this end, the interdisciplinary research program "Soil as a Natural Resource for the Bio-Economy - BonaRes" was launched by the German Federal Government in 2015. One part of this program is the development of a Knowledge Centre for soil functions and services. As part of the Knowledge Centre, we focus on the identification and quantification of biological drivers of soil functions. Based on a systematic review of existing literature, we assess the importance of different soil faunal groups for the soil functions and processes most relevant to agricultural production (i.e. decomposition, mineralization, soil structuring. Additionally, we investigate direct impacts of soil fauna on soil properties (e.g. aggregation, pore volume). As site specific conditions such as climate, soil type or management practices affect soil fauna and their performance, these responses must also be taken into account. In the end, our findings will be used in the development of modeling tools aiming to predict the impacts of different management measures on soil ecosystem services and functions.

Establishment and effectiveness of inoculated arbuscular mycorrhizal fungi in agricultural soils.

PubMed

Köhl, Luise; Lukasiewicz, Catherine E; van der Heijden, Marcel G A

2016-01-01

Arbuscular mycorrhizal fungi (AMF) are promoted as biofertilizers for sustainable agriculture. So far, most researchers have investigated the effects of AMF on plant growth under highly controlled conditions with sterilized soil, soil substrates or soils with low available P or low inoculum potential. However, it is still poorly documented whether inoculated AMF can successfully establish in field soils with native AMF communities and enhance plant growth. We inoculated grassland microcosms planted with a grass-clover mixture (Lolium multiflorum and Trifolium pratense) with the arbuscular mycorrhizal fungus Rhizoglomus irregulare. The microcosms were filled with eight different unsterilized field soils that varied greatly in soil type and chemical characteristics and indigenous AMF communities. We tested whether inoculation with AMF enhanced plant biomass and R. irregulare abundance using a species specific qPCR. Inoculation increased the abundance of R. irregulare in all soils, irrespective of soil P availability, the initial abundance of R. irregulare or the abundance of native AM fungal communities. AMF inoculation had no effect on the grass but significantly enhanced clover yield in five out of eight field soils. The results demonstrate that AMF inoculation can be successful, even when soil P availability is high and native AMF communities are abundant. © 2015 John Wiley & Sons Ltd.

Leaching characteristics of toxic constituents from coal fly ash mixed soils under the influence of pH.

PubMed

Komonweeraket, Kanokwan; Cetin, Bora; Benson, Craig H; Aydilek, Ahmet H; Edil, Tuncer B

2015-04-01

Leaching behaviors of Arsenic (As), Barium (Ba), Calcium (Ca), Cadmium (Cd), Magnesium (Mg), Selenium (Se), and Strontium (Sr) from soil alone, coal fly ash alone, and soil-coal fly ash mixtures, were studied at a pH range of 2-14 via pH-dependent leaching tests. Seven different types of soils and coal fly ashes were tested. Results of this study indicated that Ca, Cd, Mg, and Sr showed cationic leaching pattern while As and Se generally follows an oxyanionic leaching pattern. On the other hand, leaching of Ba presented amphoteric-like leaching pattern but less pH-dependent. In spite of different types and composition of soil and coal fly ash investigated, the study reveals the similarity in leaching behavior as a function of pH for a given element from soil, coal fly ash, and soil-coal fly ash mixtures. The similarity is most likely due to similar controlling mechanisms (e.g., solubility, sorption, and solid-solution formation) and similar controlling factors (e.g., leachate pH and redox conditions). This offers the opportunity to transfer knowledge of coal fly ash that has been extensively characterized and studied to soil stabilized with coal fly ash. It is speculated that unburned carbon in off-specification coal fly ashes may provide sorption sites for Cd resulting in a reduction in concentration of these elements in leachate from soil-coal fly ash mixture. Class C fly ash provides sufficient CaO to initiate the pozzolanic reaction yielding hydrated cement products that oxyanions, including As and Se, can be incorporated into. Copyright © 2014 Elsevier Ltd. All rights reserved.

Does consumption of leafy vegetables grown in peri-urban agriculture pose a risk to human health?

PubMed

Nabulo, G; Black, C R; Craigon, J; Young, S D

2012-03-01

Concentrations of potentially toxic elements were measured in soils and five contrasting tropical leafy vegetables grown in a replicated field trial at five contaminated urban agriculture sites in Kampala City, Uganda. Soil contamination at each site could be tentatively ascribed to known waste disposal practices. There was considerable variation in metal uptake between vegetable types. Washing leafy vegetables reduced chromium and lead concentrations but exogenous contamination of leaves also depended on vegetable type, with Gynandropsis gynandra L. showing a marked tendency to accumulate Pb and Cr. For the worst case scenario of children consuming unwashed vegetables, some metal 'hazard quotient' (HQ) limits (1.0) were violated at four of the five sites studied. For the 25 'site-vegetable' combinations assessed, the HQ for Pb exceeded 1.0 in 36% of cases. A vegetable-specific site screening tool based on soil extraction with 0.01 M CaCl(2) and extrapolation to provide HQ values was assessed. Copyright © 2011 Elsevier Ltd. All rights reserved.

The methane sink associated to soils of natural and agricultural ecosystems in Italy.

PubMed

Castaldi, Simona; Costantini, Massimo; Cenciarelli, Pietro; Ciccioli, Paolo; Valentini, Riccardo

2007-01-01

In the present work, the CH4 sink associated to Italian soils was calculated by using a process-based model controlled by gas diffusivity and microbial activity, which was run by using a raster-based geographical information system. Georeferenced data included land cover CLC2000, soil properties from the European Soil Database, climatic data from the MARS-STAT database, plus several derived soils properties based on published algorithms applied to the above mentioned databases. Overall CH4 consumption from natural and agricultural sources accounted for a total of 43.3 Gg CH4 yr(-1), with 28.1 Gg CH4 yr(-1) removed in natural ecosystems and 15.1 Gg CH4 yr(-1) in agricultural ecosystems. The highest CH4 uptake rates were obtained for natural areas of Southern Apennines and islands of Sardinia and Sicily, and were mainly associated to areas covered by sclerophyllous vegetation (259.7+/-30.2 mg CH4 m(-2) yr(-1)) and broad-leaved forest (237.5 mg CH4 m(-2) yr(-1)). In terms of total sink strength broad-leaved forests were the dominant ecosystem. The overall contribution of each ecosystem type to the whole CH4 sink depended on the total area covered by the specific ecosystem and on its exact geographic distribution. The latter determines the type of climate present in the area and the dominant soil type, both factors which showed to have a strong influence on CH4 uptake rates. The aggregated CH4 sink, calculated for natural ecosystems present in the Italian region, is significantly higher than previously reported estimates, which were extrapolated from fluxes measured in other temperate ecosystems.

The influence of soil type and altered lignin biosynthesis on the physiology, growth and carbon allocation in Populus tremuloides

Treesearch

Jessica E. Hancock; Kate L. Bradley; Christian P. Giardina; Kurt S. Pregitzer

2008-01-01

Plants influence soil carbon (C) formation through the quality and quantity of C released to soil. Soil type, in turn can modify a plant's influence on soil through effects on plant production, tissue quality and regulation of soil C decomposition and stabilization. Wild-type aspen and three transgenic aspen lines expressing reduced stem lignin concentrations and/...

Effect of soil properties on Hydraulic characteristics under subsurface drip irrigation

NASA Astrophysics Data System (ADS)

Fan, Wangtao; Li, Gang

2018-02-01

Subsurface drip irrigation (SDI) is a technique that has a high potential in application because of its high efficiency in water-saving. The hydraulic characteristics of SDI sub-unit pipe network can be affected by soil physical properties as the emitters are buried in soils. The related research, however, is not fully explored. The laboratory tests were carried out in the present study to determine the effects of hydraulic factors including operating pressure, initial soil water content, and bulk density on flow rate and its sensitivity to each hydraulic factor for two types of SDI emitters (PLASSIM emitter and Heping emitter). For this purpose, three soils with contrasting textures (i.e., light sand, silt loam, and light clay) were repacked with two soil bulk density (1.25 and1.40 g cm-3) with two initial soil water content (12% and 18%) in plexiglass columns with 40 cm in diameter and 40 cm in height. Drip emitters were buried at depth of 20 cm to measure the flow rates under seven operating pressures (60, 100, 150, 200, 250, 300, and 370 kPa). We found that the operating pressure was the dominating factor of flow rate of the SDI emitter, and flow rate increased with the increase of operating pressure. The initial soil water content and bulk density also affected the flow rate, and their effects were the most notable in the light sand soil. The sensitivity of flow rate to each hydraulic factor was dependent on soil texture, and followed a descending order of light sand>silt loam>light clay for both types of emitters. Further, the sensitivity of flow rate to each hydraulic factor decreased with the increase of operating pressure, initial soil water content, and bulk density. This study may be used to guide the soil specific-design of SDI emitters for optimal water use and management.

Hyperspectral Imaging Analysis for the Classification of Soil Types and the Determination of Soil Total Nitrogen

PubMed Central

Jia, Shengyao; Li, Hongyang; Wang, Yanjie; Tong, Renyuan; Li, Qing

2017-01-01

Soil is an important environment for crop growth. Quick and accurately access to soil nutrient content information is a prerequisite for scientific fertilization. In this work, hyperspectral imaging (HSI) technology was applied for the classification of soil types and the measurement of soil total nitrogen (TN) content. A total of 183 soil samples collected from Shangyu City (People’s Republic of China), were scanned by a near-infrared hyperspectral imaging system with a wavelength range of 874–1734 nm. The soil samples belonged to three major soil types typical of this area, including paddy soil, red soil and seashore saline soil. The successive projections algorithm (SPA) method was utilized to select effective wavelengths from the full spectrum. Pattern texture features (energy, contrast, homogeneity and entropy) were extracted from the gray-scale images at the effective wavelengths. The support vector machines (SVM) and partial least squares regression (PLSR) methods were used to establish classification and prediction models, respectively. The results showed that by using the combined data sets of effective wavelengths and texture features for modelling an optimal correct classification rate of 91.8%. could be achieved. The soil samples were first classified, then the local models were established for soil TN according to soil types, which achieved better prediction results than the general models. The overall results indicated that hyperspectral imaging technology could be used for soil type classification and soil TN determination, and data fusion combining spectral and image texture information showed advantages for the classification of soil types. PMID:28974005

General Relationships between Abiotic Soil Properties and Soil Biota across Spatial Scales and Different Land-Use Types

PubMed Central

Birkhofer, Klaus; Schöning, Ingo; Alt, Fabian; Herold, Nadine; Klarner, Bernhard; Maraun, Mark; Marhan, Sven; Oelmann, Yvonne; Wubet, Tesfaye; Yurkov, Andrey; Begerow, Dominik; Berner, Doreen; Buscot, François; Daniel, Rolf; Diekötter, Tim; Ehnes, Roswitha B.; Erdmann, Georgia; Fischer, Christiane; Foesel, Bärbel; Groh, Janine; Gutknecht, Jessica; Kandeler, Ellen; Lang, Christa; Lohaus, Gertrud; Meyer, Annabel; Nacke, Heiko; Näther, Astrid; Overmann, Jörg; Polle, Andrea; Pollierer, Melanie M.; Scheu, Stefan; Schloter, Michael; Schulze, Ernst-Detlef; Schulze, Waltraud; Weinert, Jan; Weisser, Wolfgang W.; Wolters, Volkmar; Schrumpf, Marion

2012-01-01

Very few principles have been unraveled that explain the relationship between soil properties and soil biota across large spatial scales and different land-use types. Here, we seek these general relationships using data from 52 differently managed grassland and forest soils in three study regions spanning a latitudinal gradient in Germany. We hypothesize that, after extraction of variation that is explained by location and land-use type, soil properties still explain significant proportions of variation in the abundance and diversity of soil biota. If the relationships between predictors and soil organisms were analyzed individually for each predictor group, soil properties explained the highest amount of variation in soil biota abundance and diversity, followed by land-use type and sampling location. After extraction of variation that originated from location or land-use, abiotic soil properties explained significant amounts of variation in fungal, meso- and macrofauna, but not in yeast or bacterial biomass or diversity. Nitrate or nitrogen concentration and fungal biomass were positively related, but nitrate concentration was negatively related to the abundances of Collembola and mites and to the myriapod species richness across a range of forest and grassland soils. The species richness of earthworms was positively correlated with clay content of soils independent of sample location and land-use type. Our study indicates that after accounting for heterogeneity resulting from large scale differences among sampling locations and land-use types, soil properties still explain significant proportions of variation in fungal and soil fauna abundance or diversity. However, soil biota was also related to processes that act at larger spatial scales and bacteria or soil yeasts only showed weak relationships to soil properties. We therefore argue that more general relationships between soil properties and soil biota can only be derived from future studies that consider larger spatial scales and different land-use types. PMID:22937029

Differences in hydrological responses for different vegetation types on a steep slope on the Loess Plateau, China

NASA Astrophysics Data System (ADS)

Duan, Liangxia; Huang, Mingbin; Zhang, Luodan

2016-06-01

Extensive vegetation restoration practices have been implemented to control soil erosion on the Loess Plateau, China. However, no strict guidelines are available to determine the most suitable plant species for vegetation restoration within a given area. The objective of this study was to quantify the changes of each component (soil water storage, surface runoff, and actual evapotranspiration) of a water balance model and soil loss over time under eight different vegetation types, and to further determine the optimal vegetation type for soil and water conservation and sustainable ecological restoration on the steep slopes (>25°) on the Loess Plateau. The results indicated that vegetation type substantially affected soil water storage and that the greatest soil water storage in both the shallow (0-2 m) and the deep soil layers (2-5 m) occurred under Bothriochloa ischaemum L. (BOI). Vegetation type also affected surface runoff and soil losses. The most effective vegetation types for reducing soil erosion were BOI and Sea-buckthorn (Hippophae rhamnoides L.), while Chinese pine (Pinus tabulaeformis Carr.) and Chinese pine + Black locust (Robinia pseudoacacia L.) were the most ineffective types. Soil water dynamics and evapotranspiration varied considerably among the different vegetation types. A soil water surplus was only found under BOI, while insufficient water replenishment existed under the other seven vegetation types. The higher water consumption rates of the seven vegetation types could result in soil desiccation, which could lead to severe water stresses that would adversely affect plant growth. This study suggested that both vegetation type and its effect on controlling soil erosion should be considered when implementing vegetation restoration and that BOI should be highly recommended for vegetation restoration on the steep slopes of the Loess Plateau. A similar approach to the one used in this study could be applied to other regions of the world confronted by the same problems of water scarcity along with the need for vegetation restoration.

Soil-related variations in the population dynamics of six dipterocarp tree species with strong habitat preferences.

PubMed

Yamada, Toshihiro; Yamada, Yuko; Okuda, Toshinori; Fletcher, Christine

2013-07-01

Differences in the density of conspecific tree individuals in response to environmental gradients are well documented for many tree species, but how such density differences are generated and maintained is poorly understood. We examined the segregation of six dipterocarp species among three soil types in the Pasoh tropical forest, Malaysia. We examined how individual performance and population dynamics changed across the soil types using 10-year demographic data to compare tree performance across soil types, and constructed population matrix models to analyze the population dynamics. Species showed only minor changes in mortality and juvenile growth across soil types, although recruitment differed greatly. Clear, interspecific demographic trade-offs between growth and mortality were found in all soil types. The relative trade-offs by a species did not differ substantially among the soil types. Population sizes were projected to remain stable in all soil types for all species with one exception. Our life-table response experiment demonstrated that the population dynamics of a species differed only subtly among soil types. Therefore, species with strong density differences across soil types do not necessarily differ greatly in their population dynamics across the soil types. In contrast, interspecific differences in population dynamics were large. The trade-off between mortality and growth led to a negative correlation between the contributions of mortality and growth to variations in the population growth rate (λ) and thus reduced their net contributions. Recruitment had little impact on the variation in λ. The combination of these factors resulted in little variation in λ among species.

Verification and completion of a soil data base for process based erosion model applications in Mato Grosso/Brazil

NASA Astrophysics Data System (ADS)

Schindewolf, Marcus; Schultze, Nico; Schönke, Daniela; Amorim, Ricardo S. S.; Schmidt, Jürgen

2014-05-01

The study area of central Mato Grosso is subjected to severe soil erosion. Continuous erosion leads to massive losses of top soil and related organic carbon. Consequently agricultural soil soils suffer a drop in soil fertility which only can be balanced by mineral fertilization. In order to control soil degradation and organic carbon losses of Mato Grosso cropland soils a process based soil loss and deposition model is used. Applying the model it will be possible to: - identify the main areas affected by soil erosion or deposition in different scales under present and future climate and socio-economic conditions - estimate the related nutrient and organic carbon losses/yields - figure out site-related causes of soil mobilization/deposition - locate sediment and sediment related nutrient and organic matter pass over points into surface water bodies - estimate the impacts of climate and land use changes on the losses of top soil, sediment bound nutrients and organic carbon. Model input parameters include digital elevation data, precipitation characteristics and standard soil properties as particle size distribution, total organic carbon (TOC) and bulk density. The effects of different types of land use and agricultural management practices are accounted for by varying site-specific parameters predominantly related to soil surface properties such as erosional resistance, hydraulic roughness and percentage ground cover. In this context the existing EROSION 3D soil parameter data base deducted from large scale rainfall simulations in Germany is verified for application in the study area, using small scale disc type rainfall simulator with an additional runoff reflux approach. Thus it's possible to enlarge virtual plot length up to at least 10 m. Experimental plots are located in Cuiabá region of central Mato Grosso in order to cover the most relevant land use variants and tillage practices in the region. Results show that derived model parameters are highly influenced by soil management. This indicates a high importance of tillage impact on resistance to erosion, mulch cover and TOC. The measured parameter ranges can generally be confirmed by the existing data base, which only need to be completed due to changed phenological stages in Mato Grosso compared to German conditions.

Microbial Profiling of a Suppressiveness-Induced Agricultural Soil Amended with Composted Almond Shells

PubMed Central

Vida, Carmen; Bonilla, Nuria; de Vicente, Antonio; Cazorla, Francisco M.

2016-01-01

This study focused on the microbial profile present in an agricultural soil that becomes suppressive after the application of composted almond shells (AS) as organic amendments. For this purpose, we analyzed the functions and composition of the complex communities present in an experimental orchard of 40-year-old avocado trees, many of them historically amended with composted almond shells. The role of microbes in the suppression of Rosellinia necatrix, the causative agent of avocado white root rot, was determined after heat-treatment and complementation experiments with different types of soil. Bacterial and fungal profiles obtained from natural soil samples based on the 16S rRNA gene and ITS sequencing revealed slight differences among the amended (AS) and unamended (CT) soils. When the soil was under the influence of composted almond shells as organic amendments, an increase in Proteobacteria and Ascomycota groups was observed, as well as a reduction in Acidobacteria and Mortierellales. Complementary to these findings, functional analysis by GeoChip 4.6 confirmed these subtle differences, mainly present in the relative abundance of genes involved in the carbon cycle. Interestingly, a group of specific probes included in the “soil benefit” category was present only in AS-amended soils, corresponding to specific microorganisms previously described as potential biocontrol agents, such as Pseudomonas spp., Burkholderia spp., or Actinobacteria. Considering the results of both analyses, we determined that AS-amendments to the soil led to an increase in some orders of Gammaproteobacteria, Betaproteobacteria, and Dothideomycetes, as well as a reduction in the abundance of Xylariales fungi (where R. necatrix is allocated). The combination of microbial action and substrate properties of suppressiveness are discussed. PMID:26834725

Assessment and kinetics of soil phosphatase in Brazilian Savanna systems.

PubMed

Ferreira, Adão S; Espíndola, Suéllen P; Campos, Maria Rita C

2016-05-31

The activity and kinetics of soil phosphatases are important indicators to evaluate soil quality in specific sites such as the Cerrado (Brazilian Savanna). This study aimed to determine the activity and kinetic parameters of soil phosphatase in Cerrado systems. Soil phosphatase activity was assessed in samples of native Cerrado (NC), no-tillage (NT), conventional tillage (CT) and pasture with Brachiaria brizantha (PBb) and evaluated with acetate buffer (AB), tris-HCl buffer (TB), modified universal buffer (MUB) and low MUB. The Michaelis-Menten equation and Eadie-Hofstee model were applied to obtain the kinetic parameters of soil phosphatase using different concentrations of p-nitrophenol phosphate (p-NPP). MUB showed the lowest soil phosphatase activity in all soils whereas AB in NC and NT presented the highest. Low MUB decreased interferences in the assessment of soil phosphatase activity when compared to MUB, suggesting that organic acids interfere on the soil phosphatase activity. In NC and NT, soil phosphatase activity performed with TB was similar to AB and low MUB. Km values from the Michaels-Menten equation were higher in NC than in NT, which indicate a lower affinity of phosphatase activity for the substrate in NC. Vmax values were also higher in NC than in NT. The Eadie-Hofstee model suggests that NC had more phosphatase isoforms than NT. The study showed that buffer type is of fundamental importance when assessing soil phosphatase activity in Cerrado soils.

The Soil Series in Soil Classifications of the United States

NASA Astrophysics Data System (ADS)

Indorante, Samuel; Beaudette, Dylan; Brevik, Eric C.

2014-05-01

Organized national soil survey began in the United States in 1899, with soil types as the units being mapped. The soil series concept was introduced into the U.S. soil survey in 1903 as a way to relate soils being mapped in one area to the soils of other areas. The original concept of a soil series was all soil types formed in the same parent materials that were of the same geologic age. However, within about 15 years soil series became the primary units being mapped in U.S. soil survey. Soil types became subdivisions of soil series, with the subdivisions based on changes in texture. As the soil series became the primary mapping unit the concept of what a soil series was also changed. Instead of being based on parent materials and geologic age, the soil series of the 1920s was based on the morphology and composition of the soil profile. Another major change in the concept of soil series occurred when U.S. Soil Taxonomy was released in 1975. Under Soil Taxonomy, the soil series subdivisions were based on the uses the soils might be put to, particularly their agricultural uses (Simonson, 1997). While the concept of the soil series has changed over the years, the term soil series has been the longest-lived term in U.S. soil classification. It has appeared in every official classification system used by the U.S. soil survey (Brevik and Hartemink, 2013). The first classification system was put together by Milton Whitney in 1909 and had soil series at its second lowest level, with soil type at the lowest level. The second classification system used by the U.S. soil survey was developed by C.F. Marbut, H.H. Bennett, J.E. Lapham, and M.H. Lapham in 1913. It had soil series at the second highest level, with soil classes and soil types at more detailed levels. This was followed by another system in 1938 developed by M. Baldwin, C.E. Kellogg, and J. Thorp. In this system soil series were again at the second lowest level with soil types at the lowest level. The soil type concept was dropped and replaced by the soil phase in the 1950s in a modification of the 1938 Baldwin et al. classification (Simonson, 1997). When Soil Taxonomy was released in 1975, soil series became the most detailed (lowest) level of the classification system, and the only term maintained throughout all U.S. classifications to date. While the number of recognized soil series have increased steadily throughout the history of U.S. soil survey, there was a rapid increase in the recognition of new soil series following the introduction of Soil Taxonomy (Brevik and Hartemink, 2013). References Brevik, E.C., and A.E. Hartemink. 2013. Soil maps of the United States of America. Soil Science Society of America Journal 77:1117-1132. doi:10.2136/sssaj2012.0390. Simonson, R.W. 1997. Evolution of soil series and type concepts in the United States. Advances in Geoecology 29:79-108.

Soil Microbial Biomass, Basal Respiration and Enzyme Activity of Main Forest Types in the Qinling Mountains

PubMed Central

Cheng, Fei; Peng, Xiaobang; Zhao, Peng; Yuan, Jie; Zhong, Chonggao; Cheng, Yalong; Cui, Cui; Zhang, Shuoxin

2013-01-01

Different forest types exert essential impacts on soil physical-chemical characteristics by dominant tree species producing diverse litters and root exudates, thereby further regulating size and activity of soil microbial communities. However, the study accuracy is usually restricted by differences in climate, soil type and forest age. Our objective is to precisely quantify soil microbial biomass, basal respiration and enzyme activity of five natural secondary forest (NSF) types with the same stand age and soil type in a small climate region and to evaluate relationship between soil microbial and physical-chemical characters. We determined soil physical-chemical indices and used the chloroform fumigation-extraction method, alkali absorption method and titration or colorimetry to obtain the microbial data. Our results showed that soil physical-chemical characters remarkably differed among the NSFs. Microbial biomass carbon (Cmic) was the highest in wilson spruce soils, while microbial biomass nitrogen (Nmic) was the highest in sharptooth oak soils. Moreover, the highest basal respiration was found in the spruce soils, but mixed, Chinese pine and spruce stands exhibited a higher soil qCO2. The spruce soils had the highest Cmic/Nmic ratio, the greatest Nmic/TN and Cmic/Corg ratios were found in the oak soils. Additionally, the spruce soils had the maximum invertase activity and the minimum urease and catalase activities, but the maximum urease and catalase activities were found in the mixed stand. The Pearson correlation and principle component analyses revealed that the soils of spruce and oak stands obviously discriminated from other NSFs, whereas the others were similar. This suggested that the forest types affected soil microbial properties significantly due to differences in soil physical-chemical features. PMID:23840671

Cutting type affects rooting percentage of asexually propagated Sparkleberry (Vaccinium arborem)

USDA-ARS?s Scientific Manuscript database

Commercial blueberries, particularly Vaccinium corymbosum, have very specific needs for optimum growth; hence, growing sites are limited. They require acidic soil (pH 4.0-5.5), good drainage, thorough aeration, and a constant moderate amount of moisture. To overcome these restrictions, they could be...

Cutting type affects rooting percentage of asexually propagated Sparkleberry (Vaccinium arboreum)

USDA-ARS?s Scientific Manuscript database

Commercial blueberries, particularly Vaccinium corymbosum, have very specific needs for optimum growth; hence, growing sites are limited. They require acidic soil (pH 4.0-5.5), good drainage, thorough aeration, and a constant moderate amount of moisture. To overcome these restrictions, they could be...

Sediment associated with forest operations in the Piedmont region

Treesearch

Kristopher R. Brown; W. Michael Aust; Kevin J. McGuire

2013-01-01

Reduced-impact forestry uses best management practices (BMPs) during operations to minimize soil erosion and sediment delivery to streams and to maintain or improve site productivity. However, the efficacy of specific types of BMP implementation is not widely documented. This review synthesizes recent research that investigated contemporary BMP implementation and...

Pollution Analyzing and Monitoring Instruments.

ERIC Educational Resources Information Center

1972

Compiled in this book is basic, technical information useful in a systems approach to pollution control. Descriptions and specifications are given of what is available in ready made, on-the-line commercial equipment for sampling, monitoring, measuring and continuously analyzing the multitudinous types of pollutants found in the air, water, soil,…

[Humus composition of black soil and its organo-mineral complexes under different fertility level].

PubMed

Zhao, Lanpo; Wang, Jie; Liu, Jingshuan; Liu, Shuxia; Wang, Yanling; Wang, Hongbin; Zhang, Zhidan

2005-01-01

Determinations by Kumada method showed that with the improvement of black soil fertility, the free and combined humus contents in soil and its different size organo-mineral complexes increased, but the humification degree of free humus decreased, which was more obvious in silt and fine sand size complexes. The organic carbon content in complexes, humus extraction rate, free humus content, and humification degree of free humic acid decreased with the increasing particle size of complexes. All free humic acids in fertile soil were Rp type, while in unfertile soil, they were Rp and B type. With the increasing particle size of complexes, the type of free humic acids changed in the sequence A type (clay)-->B type (silt)-->Rp type (fine sand). Combined form humic acid mainly belonged to A type, no matter what particle size the complex was. The improvement of soil fertility could make the humification degree of free humus in soil and its complexes decrease, and furthermore, result in type change. In black soil, the type change of free humic acid mainly occurred in silt size complex, and that of combined form humic acid mainly occurred in fine sand size complex.

Influence of forest management on the changes of organic soil properties in border part of Kragle Mokradlo Peatland (Stolowe Mountains National Park, Poland)

NASA Astrophysics Data System (ADS)

Bogacz, A.; Roszkowicz, M.

2009-04-01

SUMMARY The aim of this work was to determine the properties of organic soils modified by man, muddy and fluvial process. Peat horizons were analyzed and classified by types - and species of peat. Three profiles of shallow peat and peaty gley soils identified. Investigation showed that organic soil developed on a sandy weathered sandstone base according to oligotrophic type of sites. Organic horizons were mixed with sand and separated by sandy layers. Those soils were classified as Sapric Histosols Dystric or Sapric Gleysols Histic (WRB 2006). The throphism of organic soil in this object resulted from both natural factors and anthropo-pedogenesis. key words: peat deposit, organic soils, soil properties, muddy process, sandy layers INTRODUCTION The areas of Stolowe Mountains National Park were influenced by forestry management. Many peatlands in the Park area were drained for forestry before World War II. Several amelioration attempts were undertaken as early as in the nineteenth century. The system of forest roads were built on drained areas. The Kragle Mokradlo Peatland is located in the Skalniak plateau. The object is cut by a melioration ditch. This ditch has been recently blocked to rewet the objects. Several forest roads pass in the close neighbourhood of investigated areas. In a border part of Kragle Mokradlo Peatlands, we can observe artificial spruce habitat. Investigated object represents shallow peat soil developed on sandy basement. The early investigations showed that peaty soils were also covered by sandstone - related deposits, several dozen centimeter thick (BOGACZ 2000). Those layers was developed from sandstone weathered material transported by wind and water. The aim of presented works was to determine the stage of evolution of organic soils on the base on their morphological, physical and chemical properties. MATERIAL AND METHODS Peat soils in different locations (3 profiles, 18 samples) were selected for examination. Peat samples were collected from study areas using a 6.0 cm diameter Instorfu peat auger (HORAWSKI 1987). Soil horizons were determined on the basis of colour, degree of organic matter decomposition and the quality of vegetation remains. Cores were taken to the depth where underlying mineral material was encountered. The cores ware sectioned to subsamples at intervals at major stratigrafic breaks. Some physical, chemical properties and botanical composition of peat were determined in this material. Differentiation in botanical composition of peat was analyzed by the microscopic method and subsequently classified according to the Polish standards (Oznaczanie gatunku...1977). Peat humification degree was measured using two methods: SPEC method and half syringe method (LYNN at all. 1974). Ash content was estimated by combusting the material in a muffle furnace at 500oC for 4 hours. The texture of mineral horizons was determined using the Bouyoucos hydrometer method (GEE AND BOUNDER 1986). The specific gravity (W) and bulk density (Z) of organic soils were calculated using the following formula's (ZAWADZKI 1970): W=0.11A+1.451, (1.451) represents the specific gravity of humus, Z =0.004A+0.0913, A is a ash content and constant (0.0913) represents the bulk density of humus. The following chemical properties of organic soil horizons were analyzed: content of total carbon and nitrogen, acidity in H2O and 1mol dm-3 KCl and CECe in CH3COONH4 at pH 7. Base saturation (BS) of soil sorption complex was calculated. The soils were classified to reference groups in WRB Classification System (WRB 2006). RESULTS AND DISSCUSION Based on the cores, -the soils in the border part of Kragle Mokradlo Peatland area were classified as Sapric Histosols Dystric or Sapric Gleysols Histic (WRB 2006). Soils represented ombrogenic type of hydrological conditions. In that site, an ombrogenic type of hydrological input is the predominant mechanism of soil evolution. Soil examined in this study have developed in oligotrophic type of site. Organic soils developed on sandy weathered sandstones. The depth of organic horizons ranged from 40 to 80 cm. The object represented spruce forests habitat introduced by man. Organic horizons were separated by sandy layers. The process of sandstone weathering and forestry management changed morphological features of soils. Presently, the area is under the influence of fluvigenic type of hydrological input, too. Geobotanical analyses of peat layers indicated significant presence of preserved fragments of roots grasses, Sphagnum sp. and Bryales sp. Hemic or sapric material were usually present in organic horizons of this object. Analysis of organic horizons showed that their specific gravity was about 1.58-2.25 g cm-3, the bulk density was 0.14-0.42 g cm-3. The total porosity was in the range 82.0-91.1% and the ash content: in the range 11.74-77.96% of soil dry matter. Organic material consisting of weathered sandstone was likely to move down the profiles, increasing the concentration of sand and silt fractions in organic horizons. The similar phenomenon of residual deposits was reported by KLEMENTOWSKI (1979). The values of bulk density of peatland soils are connected with the high ash content. Ash content was different in situated layers. This is caused by the muddy and fluvial process. This situation was influenced by trophical status of this soils. The pH of sand and peat layers in a border part of Krągłe Mokradło Peatland was strongly acidic: pH H2O 2.92-3.51, pH KCl 2.38-3.07. The acidity was lower in upper horizons than in deeper ones. The ratio C/N in organic horizons ranged between 10:1 to 40:1. Low ratios of C/N in some upper horizons were probably caused by strong mineralization of organic matter. Strongly acidic soil horizons usually exhibited high cation exchange capacity (CECe). In general, the base saturated (BS) did not exceed 50%. Organic surface horizons showed higher content of potassium, calcium and magnesium than lower horizons. CONCLUSIONS Shallow organic soils occupy the ombrotrophic sites of a border part of Kragle Mokradlo Peatland. The variety of organic soil throphism in the object resulted from the placement on the base sandstone, partial mixing of soil horizons as well as from muddy and fluvial processes. Peat horizons present in the studied profiles were generally classified as hemic and sapric, sometimes as fibric. Soil horizons exhibited differed thickness and ash content. Forest management strongly changed the properties of organic soil. REFERENCES Bogacz, A. (2000). Physical properties of organic soil in Stolowe Mountains National Park (Poland). Suo 51,3; pp.105-113. Gee, G.W. and Bauder, J.W. (1986). Particle-size analysis. In: Klute, A.(ed.) Methods of Soil Analysis Part I. Agronomy series No. 9. Am. Soc. Agronomy Soil Sci. Am, Inc., Publ., Madison, WI.pp. 383-411. Horawski, M. (1987). Torfoznawstwo dla meliorantow. Pojecia podstawowe.[Peat science for melioration. Basic definitions.]. Wydawnictwo Akademii Rolniczej w Krakowie. pp.37-39.[In Polish]. Lubliner - Mianowska, K. (1951). Wskazowki do badania torfu. Metody geobotaniczne, polowe i laboratoryjne [Hints to peat research. In: Geobotanical, field and laboratory methods] Państwowe Wydawnictwo Techniczne, Katowice.pp.58-60. [In Polish]. Lynn, W.C., Mc Kinzie, W.E., Grossman, R.B. (1974). Field Laboratory Test for characterization of Histosols. In: Histosols, their characteristics, classification and use. pp. 11-20. Oznaczanie gatunku, rodzaju i typu torfu. (1977). [Peat and peat varies. Determination of classes, sort and types of peat]. Polish standard PN-76/G-02501, [Polish Normalization Commitee]. pp.1-11.[In Polish]. Word Reference Base for Soil Resources. 1998. Word Soil Resources Report, 84. FAO-ISRIC-ISSS, Rome, pp.1-88. Zawadzki, S. (1970). Relationship between the content of organic matter and physical properties of hydrogenic soils. Polish Journal of Soil Science Vol.III, 1; pp.3-9.

Horizon-Specific Bacterial Community Composition of German Grassland Soils, as Revealed by Pyrosequencing-Based Analysis of 16S rRNA Genes ▿ †

PubMed Central

Will, Christiane; Thürmer, Andrea; Wollherr, Antje; Nacke, Heiko; Herold, Nadine; Schrumpf, Marion; Gutknecht, Jessica; Wubet, Tesfaye; Buscot, François; Daniel, Rolf

2010-01-01

The diversity of bacteria in soil is enormous, and soil bacterial communities can vary greatly in structure. Here, we employed a pyrosequencing-based analysis of the V2-V3 16S rRNA gene region to characterize the overall and horizon-specific (A and B horizons) bacterial community compositions in nine grassland soils, which covered three different land use types. The entire data set comprised 752,838 sequences, 600,544 of which could be classified below the domain level. The average number of sequences per horizon was 41,824. The dominant taxonomic groups present in all samples and horizons were the Acidobacteria, Betaproteobacteria, Actinobacteria, Gammaproteobacteria, Alphaproteobacteria, Deltaproteobacteria, Chloroflexi, Firmicutes, and Bacteroidetes. Despite these overarching dominant taxa, the abundance, diversity, and composition of bacterial communities were horizon specific. In almost all cases, the estimated bacterial diversity (H′) was higher in the A horizons than in the corresponding B horizons. In addition, the H′ was positively correlated with the organic carbon content, the total nitrogen content, and the C-to-N ratio, which decreased with soil depth. It appeared that lower land use intensity results in higher bacterial diversity. The majority of sequences affiliated with the Actinobacteria, Bacteroidetes, Cyanobacteria, Fibrobacteres, Firmicutes, Spirochaetes, Verrucomicrobia, Alphaproteobacteria, Betaproteobacteria, and Gammaproteobacteria were derived from A horizons, whereas the majority of the sequences related to Acidobacteria, Chloroflexi, Gemmatimonadetes, Nitrospira, TM7, and WS3 originated from B horizons. The distribution of some bacterial phylogenetic groups and subgroups in the different horizons correlated with soil properties such as organic carbon content, total nitrogen content, or microbial biomass. PMID:20729324

A Moisture Function of Soil Heterotrophic Respiration Derived from Pore-scale Mechanisms

NASA Astrophysics Data System (ADS)

Yan, Z.; Todd-Brown, K. E.; Bond-Lamberty, B. P.; Bailey, V.; Liu, C.

2017-12-01

Soil heterotrophic respiration (HR) is an important process controlling carbon (C) flux, but its response to changes in soil water content (θ) is poorly understood. Earth system models (ESMs) use empirical moisture functions developed from specific sites to describe the HR-θ relationship in soils, introducing significant uncertainty. Generalized models derived from mechanisms that control substrate availability and microbial respiration are thus urgently needed. Here we derive, present, and test a novel moisture function fp developed from pore-scale mechanisms. This fp encapsulates primary physicochemical and biological processes controlling HR response to moisture variation in soils. We tested fp against a wide range of published data for different soil types, and found that fp reliably predicted diverse HR- relationships. The mathematical relationship between the parameters in fp and macroscopic soil properties such as porosity and organic C content was also established, enabling to estimate fp using soil properties. Compared with empirical moisture functions used in ESMs, this derived fp could reduce uncertainty in predicting the response of soil organic C stock to climate changes. In addition, this work is one of the first studies to upscale a mechanistic soil HR model based on pore-scale processes, thus linking the pore-scale mechanisms with macroscale observations.

7 CFR 319.69-5 - Types of soil authorized for packing.

Code of Federal Regulations, 2010 CFR

2010-01-01

... 7 Agriculture 5 2010-01-01 2010-01-01 false Types of soil authorized for packing. 319.69-5 Section 319.69-5 Agriculture Regulations of the Department of Agriculture (Continued) ANIMAL AND PLANT HEALTH... Regulations § 319.69-5 Types of soil authorized for packing. The following types of soil or earth are...

7 CFR 319.69-5 - Types of soil authorized for packing.

Code of Federal Regulations, 2011 CFR

2011-01-01

... 7 Agriculture 5 2011-01-01 2011-01-01 false Types of soil authorized for packing. 319.69-5 Section 319.69-5 Agriculture Regulations of the Department of Agriculture (Continued) ANIMAL AND PLANT HEALTH... Regulations § 319.69-5 Types of soil authorized for packing. The following types of soil or earth are...

7 CFR 319.69-5 - Types of soil authorized for packing.

Code of Federal Regulations, 2014 CFR

2014-01-01

... 7 Agriculture 5 2014-01-01 2014-01-01 false Types of soil authorized for packing. 319.69-5 Section 319.69-5 Agriculture Regulations of the Department of Agriculture (Continued) ANIMAL AND PLANT HEALTH... Regulations § 319.69-5 Types of soil authorized for packing. The following types of soil or earth are...

7 CFR 319.69-5 - Types of soil authorized for packing.

Code of Federal Regulations, 2013 CFR

2013-01-01

... 7 Agriculture 5 2013-01-01 2013-01-01 false Types of soil authorized for packing. 319.69-5 Section 319.69-5 Agriculture Regulations of the Department of Agriculture (Continued) ANIMAL AND PLANT HEALTH... Regulations § 319.69-5 Types of soil authorized for packing. The following types of soil or earth are...

7 CFR 319.69-5 - Types of soil authorized for packing.

Code of Federal Regulations, 2012 CFR

2012-01-01

... 7 Agriculture 5 2012-01-01 2012-01-01 false Types of soil authorized for packing. 319.69-5 Section 319.69-5 Agriculture Regulations of the Department of Agriculture (Continued) ANIMAL AND PLANT HEALTH... Regulations § 319.69-5 Types of soil authorized for packing. The following types of soil or earth are...

Isotopic patterns in caps and stipes in sporocarps reveal patterns of organic nitrogen use by ectomycorrhizal fungi

NASA Astrophysics Data System (ADS)

Hobbie, Erik; Ouimette, Andrew; Chen, Janet

2016-04-01

Current ecosystem models use inorganic nitrogen as the currency of nitrogen acquisition by plants. However, many trees may gain access to otherwise unavailable soil resources, such as soil organic nitrogen, through their symbioses with ectomycorrhizal fungi, and this pathway of nitrogen acquisition may therefore be important in understanding plant responses to environmental change. Different functional groups of ectomycorrhizal fungi vary in their ability to enzymatically access protein and other soil resources. Such fungal parameters as hyphal hydrophobicity, the presence of rhizomorphs (long-distance transport structures), and exploration strategies (e.g., short-distance versus long-distance, mat formation) correspond with how fungi interact with and explore the environment, and the proportions of different exploration types present will shift along environmental gradients such as nitrogen availability. Isotopic differences between caps and stipes may provide a means to test for organic nitrogen use, since caps and stipes differ in δ13C and δ15N as a result of variable proportions of protein and other classes of compounds, and protein should differ isotopically among de novo synthesis, litter sources, and soil sources. Here, we propose that (1) isotopic differences between caps and stipes could be related to organic nitrogen uptake and to the δ13C and δ15N values of different pools of soil-derived or de novo-synthesized amino acids; (2) these isotopic differences will reflect greater acquisition of soil-derived organic nitrogen by exploration types of greater enzymatic capabilities to degrade recalcitrant nitrogen forms, specifically long-distance, medium-distance fringe, and medium-distance mat exploration types. To test these hypotheses, we use a dataset of isotopic values, %N, and %C in 208 cap/stipe samples collected from Oregon, western USA. δ13C differences in caps and stipes in a multiple regression model had an adjusted r2 of 0.292 (p < 0.0001), and were explained best by exploration type (45% of explained variance), the interaction of exploration type and %Ncap-stipe (20%), the interaction of exploration type and %Ncap/stipe (22%), %Ccap-stipe (8%), and %Ncap-stipe (5%). δ15N differences between caps and stipes in a multiple regression model had an adjusted r2 of 0.486 (p < 0.0001), and were explained best by exploration type (47% of explained variance), the interaction of exploration type and %Ncap-stipe (26%), the interaction of exploration type and %Ncap/stipe (14%), %Ncap/stipe (11%),and %Ccap-stipe (2%). We argue that these differences in the 13C and 15N enrichment of caps relative to stipes reflect not only shifts in the proportions of protein and carbohydrates, but also differences in the extent of fluxes and the δ13C and δ15N signatures of soil- and litter-derived organic nitrogen taken up by these fungi. We also propose equations to quantify this uptake. Organic nitrogen from litter (lower δ13C and δ15N) may be incorporated by medium-distance mat, short-distance, and contact exploration types of ectomycorrhizal fungi, whereas long-distance and medium-distance fringe exploration types appeared to incorporate deeper soil organic nitrogen.

Soil Properties Analysis of the Phoenix Landing Site Based on Trench Characteristics and Robotic Arm Forces

NASA Astrophysics Data System (ADS)

Shaw, A.; Arvidson, R.; Bonitz, R.; Carsten, J.; Keller, H.; Lemmon, M.; Mellon, M. T.; Robinson, M.; Trebi-Ollennu, A.; Volpe, R.

2008-12-01

The Phoenix Mars lander has had access to polygonal terrain; specifically, two polygons and a trough. Slopes in the trenches and dump piles created from the interaction of the Phoenix robotic arm (RA) with the soil around its landing site are similar to those seen on previous missions, such as the MER and Viking missions. This indicates similar cohesion and angle of internal friction to previous landing sites. For example, trench slopes typically range from 44-72° and dump pile slopes range from 20-30°. There are at least two very different types of materials at the site: a layer of soil which goes down to several centimeters below the surface and, below that, a layer of icy soil. The RA can easily dig through the top layer of soil, often using 20-30N force. However, when it encounters icy soil, the RA requires tens of scrapes with the lower tungsten carbide blade on its scoop to progress even a few millimeters. To verify soil property parameters, we analyze the normal and shear stresses exerted on the soil by digging, scraping, and rasping with the RA.

Microelements in anthropogenically contaminated soils in the central part of Petrozavodsk

NASA Astrophysics Data System (ADS)

Rybakov, D. S.; Kevlich, V. I.

2017-06-01

Urban soils (Urbic Technosols) formed within or near the industrial sites removed of service show a considerable excess over the regional background in the content of Pb, Zn, Cu, Mn, Cr, Ni, as well as over the average content of W, Mo, Pb, Sb, Cr, Cu, Sn, Ni, Zn, and Mn in urban soils. Microelements are concentrated for the most part in the soil fine earth, and above all, in the fraction with particle size <0.1 mm. Surface films (on quartz and feldspar grains) of quartz-feldspar-muscovite (partially with tremolite and chlorite) composition and undifferentiated dispersed mixture of quartz, albite, microcline, muscovite and organomineral soil substance are the strongest concentrators of heavy metals and metalloids. Pb and Sn are partially present in soils as oxides, and a part of Zn and Pb, in the form of substantial admixtures to technogenic chemical compounds. As a whole, distribution of elements in the studied soils is controlled by the specifics and type of contamination, resistance of coarser grains to weathering under the given physicochemical conditions, and by predominantly mineral (quartz-feldspar) composition of the solids in soil layers and the features of elements proper.

Vertical Soil Profiling Using a Galvanic Contact Resistivity Scanning Approach

PubMed Central

Pan, Luan; Adamchuk, Viacheslav I.; Prasher, Shiv; Gebbers, Robin; Taylor, Richard S.; Dabas, Michel

2014-01-01

Proximal sensing of soil electromagnetic properties is widely used to map spatial land heterogeneity. The mapping instruments use galvanic contact, capacitive coupling or electromagnetic induction. Regardless of the type of instrument, the geometrical configuration between signal transmitting and receiving elements typically defines the shape of the depth response function. To assess vertical soil profiles, many modern instruments use multiple transmitter-receiver pairs. Alternatively, vertical electrical sounding can be used to measure changes in apparent soil electrical conductivity with depth at a specific location. This paper examines the possibility for the assessment of soil profiles using a dynamic surface galvanic contact resistivity scanning approach, with transmitting and receiving electrodes configured in an equatorial dipole-dipole array. An automated scanner system was developed and tested in agricultural fields with different soil profiles. While operating in the field, the distance between current injecting and measuring pairs of rolling electrodes was varied continuously from 40 to 190 cm. The preliminary evaluation included a comparison of scan results from 20 locations to shallow (less than 1.2 m deep) soil profiles and to a two-layer soil profile model defined using an electromagnetic induction instrument. PMID:25057135

Soil Investigation of Lower East Fork Poplar Creek

DOE Office of Scientific and Technical Information (OSTI.GOV)

Dickson, Johnbull O.; Mayes, Melanie; Earles, Jennifer E.

2017-03-01

Mercury is regarded by the US Department of Energy (DOE) Oak Ridge Office of Environmental Management as a priority contaminant on the Oak Ridge Reservation because of the environmental risks associated with substantial losses from buildings, soils, and surface waters at the Y-12 National Security Complex (Y-12). As a result of historical releases of mercury from Y-12 primarily in the 1950s and early 1960s, the lower East Fork Poplar Creek (LEFPC) stream channel and bank soil margins are contaminated with mercury (Brooks and Southworth 2011; Tennessee Valley Authority 1985b, a). A Mercury Remediation Technology Development project is underway to evaluatemore » the nature of downstream mercury contamination and to develop targeted site-specific remedial technologies that can mitigate mercury release and biological uptake. It is known that mercury concentration varies longitudinally and with depth in LEFPC bank soils; however, soil types and soil physical properties are not well known, especially relative to the zones of mercury contamination. Moreover, there are no soil maps for the downstream reaches of LEFPC in Roane County (i.e. from the Chestnut Hill Road downstream) and this work represents the first ever soil mapping along this section of LEFPC.« less

Biodegradation of hydrocarbon cuts used for diesel oil formulation.

PubMed

Penet, Sophie; Marchal, Rémy; Sghir, Abdelghani; Monot, Frédéric

2004-11-01

The biodegradability of various types of diesel oil (DO), such as straight-run DO, light-cycle DO, hydrocracking DO, Fischer-Tropsch DO and commercial DO, was investigated in biodegradation tests performed in closed-batch systems using two microflorae. The first microflora was an activated sludge from an urban wastewater treatment plant as commonly used in biodegradability tests of commercial products and the second was a microflora from a hydrocarbon-polluted soil with possible specific capacities for hydrocarbon degradation. Kinetics of CO(2) production and extent of DO biodegradation were obtained by chromatographic procedures. Under optimised conditions, the polluted-soil microflora was found to extensively degrade all the DO types tested, the degradation efficiencies being higher than 88%. For all the DOs tested, the biodegradation capacities of the soil microflora were significantly higher than those of the activated sludge. Using both microflora, the extent of biodegradation was highly dependent upon the type of DO used, especially its hydrocarbon composition. Linear alkanes were completely degraded in each test, whereas identifiable branched alkanes such as farnesane, pristane or phytane were degraded to variable extents. Among the aromatics, substituted mono-aromatics were also variably biodegraded.

Plant selection and soil legacy enhance long-term biodiversity effects.

PubMed

Zuppinger-Dingley, Debra; Flynn, Dan F B; De Deyn, Gerlinde B; Petermann, Jana S; Schmid, Bernhard

2016-04-01

Plant-plant and plant-soil interactions can help maintain plant diversity and ecosystem functions. Changes in these interactions may underlie experimentally observed increases in biodiversity effects over time via the selection of genotypes adapted to low or high plant diversity. Little is known, however, about such community-history effects and particularly the role of plant-soil interactions in this process. Soil-legacy effects may occur if co-evolved interactions with soil communities either positively or negatively modify plant biodiversity effects. We tested how plant selection and soil legacy influence biodiversity effects on productivity, and whether such effects increase the resistance of the communities to invasion by weeds. We used two plant selection treatments: parental plants growing in monoculture or in mixture over 8 yr in a grassland biodiversity experiment in the field, which we term monoculture types and mixture types. The two soil-legacy treatments used in this study were neutral soil inoculated with live or sterilized soil inocula collected from the same plots in the biodiversity experiment. For each of the four factorial combinations, seedlings of eight species were grown in monocultures or four-species mixtures in pots in an experimental garden over 15 weeks. Soil legacy (live inoculum) strongly increased biodiversity complementarity effects for communities of mixture types, and to a significantly weaker extent for communities of monoculture types. This may be attributed to negative plant-soil feedbacks suffered by mixture types in monocultures, whereas monoculture types had positive plant-soil feedbacks, in both monocultures and mixtures. Monocultures of mixture types were most strongly invaded by weeds, presumably due to increased pathogen susceptibility, reduced biomass, and altered plant-soil interactions of mixture types. These results show that biodiversity effects in experimental grassland communities can be modified by the evolution of positive vs. negative plant-soil feedbacks of plant monoculture vs. mixture types.

Land preparation techniques and vegetation type commonly determine soil conditions in a typical hilly watershed, Loess Plateau of China.

NASA Astrophysics Data System (ADS)

Yu, Yang; Wei, Wei; Chen, Liding; Feng, Tianjiao; Qin, Wei

2017-04-01

Soil is a key component of the earth, it plays important role in regulating the chemical, hydrological and biological cycles. Land preparation techniques (e.g., leveled ditches, leveled benches, adversely graded tableland and fish-scale pits) is one of the most effective ecological engineering practices to reduce water erosion. Land preparation greatly affects soil physicochemical properties, soil moisture variation, runoff and sediment prevention. This study investigated the influence of different land preparation techniques on soil conditions, runoff and erosion during vegetation restoration, which remained poorly understand to date. Soil samples were collected from depths of 0-10 cm, 10-20 cm, 20-40 cm, 40-60 cm, 60-80 cm and 80-100 cm, in the typical hilly watershed of Dingxi City, Loess Plateau. Soil bulk density (BD), soil organic matter (SOM) and total nitrogen (TN) were determined for different land preparations and vegetation type (Caragana korshinskii, Platycladus orientalis, Pinus tabulaeformis and Prunus armeniaca) combinations. Fractal theory was used to analyze the soil particle size distribution (PSD). Redundancy analyses were conducted to distinguish the relationships between soil conditions and the factors influencing them (land preparation and vegetation). The analysis of runoff coefficient and erosion rates were calculated considering the monitoring time. The results indicated that: 1) the effect of land preparation on soil properties and PSD varies with soil depth. For each land preparation category, SOM and TN values showed a significant difference between the top soil layer and the underlying soil depth. 2) The 20 cm soil layer was a boundary that distinguished the explanatory factors, with land preparation and vegetation type as the controlling factors in the 0-20 cm and 20-100 cm soil layers, respectively. Land preparation and vegetation significantly affected soil properties in the surface soil layer, while land preparation (41.6%) was the more important driver for this layer compared with vegetation (37.2%). Land preparation affected the soil properties by abiotic factors (e.g., surface runoff and sediment transport), while vegetation influenced soil physical and chemical properties via biotic factors (e.g., canopy and root). 3) Fish-scale pits-Pinus tabulaeformis had the highest runoff coefficient (3.91%) and adverse grade tableland-Platycladus orientalis had the lowest (1.10%). The runoff coefficient of level bench-Caragana korshinskii, fish-scale pits-Platycladus orientalis, level ditch-Prunus armeniaca and adverse grade tableland-Pinus tabulaeformis were 3.02%, 2.59%, 2.42% and 1.58%, respectively. Level bench-Caragana korshinskii had the highest erosion modulus (0.036 t/ha) and adverse grade tableland-Pinus tabulaeformis showed the lowest (0.006 t/ha). Erosion modulus of fish-scale pits-Platycladus orientalis, level ditch-Prunus armeniaca and adverse grade tableland-Platycladus orientalis were 0.026 t/ha, 0.019 t/ha and 0.015 t/ha, respectively. Compared with control, the runoff coefficient could be reduced 37.7%, 31.9%, 44.3%, 60.5%, 18.2% and 63%, respectively. Erosion modulus could be reduced 77.8%, 62.9%, 82.6%, 84.7%, 53.9% and 76.3%, respectively. Our study demonstrated that land preparation techniques and vegetation type commonly determine soil conditions and that land preparation is a recommended method to improve and rehabilitate degraded ecosystems. Applications of land preparation to vegetation restoration in the fragile ecosystems were an effective way for preventing water loss and soil erosion. Considering site-specific land preparation-plant species combinations could be critical to ensure long-term land stabilization.

Towards quantitative usage of EMI-data for Digital Soil Mapping

NASA Astrophysics Data System (ADS)

Nüsch, A.-K.; Wunderlich, T.; Kathage, S.; Werban, U.; Dietrich, P.

2009-04-01

As formulated in the Thematic Strategy for Soil Protection prepared by the European Commission soil degradation is a serious problem in Europe. The degradation is driven or exacerbated by human activity and has a direct impact on water and air quality, biodiversity, climate and human life-quality. High-resolution soil property maps are one major prerequisite for the specific protection of soil function and restoration of degraded soils as well as sustainable land use, water and environmental management. However, the currently available techniques for (digital) soil mapping still have deficiencies in terms of reliability and precision, the feasibility of investigation of large areas (e.g. catchments and landscapes) and the assessment of soil degradation threats at this scale. The focus of the iSOIL (Interactions between soil related science - Linking geophysics, soil science and digital soil mapping) project is on improving fast and reliable mapping of soil properties, soil functions and soil degradation threats. This requires the improvement as well as integration of geophysical and spectroscopic measurement techniques in combination with advanced soil sampling approaches, pedometrical and pedophysical approaches. Many commercially available geophysical sensors and equipment (EMI, DC, gamma-spectroscopy, magnetics) are ready to use for measurements of different parameters. Data collection with individual sensors is well developed and numerously described. However comparability of data of different sensor types as well as reproducibility of data is not self-evident. In particular handling of sensors has to be carried out accurately, e.g. consistent calibration. Soil parameters will be derived from geophysical properties to create comprehensive soil maps. Therefore one prerequisite is the comparison of different geophysical properties not only qualitative but also quantitative. At least reproducibility is one of the most important conditions for monitoring tasks. The first parameter we focussed on is apparent electrical conductivity (ECa). It is an important geophysical properity in soil science since soil parameters (water content, etc.) can be deduced. Nowadays mobile geophysical platforms allow to survey large areas comprehensively in a short time period. These platforms have been equipped with EM38DD (Geonics) and Profiler EMP-400 (GSSI) - two different types of electromagnetic induction (EMI) instruments - within first iSOIL field campaign. While EM38DD measures in horizontal and vertical mode at the same time, Profiler measures three frequencies simultaneously and magnetic susceptibility additionally. Coil separation of the instruments is nearly the same, so penetration depth is similar. On the other hand, frequencies are arbitrary at Profiler but fixed at EM38DD. These differences in penetration depth have to taken into account. By our measurement we tested the comparability of the data to show differences between instruments of the same type (EM38DD-EM38DD) using different settings, and different types (EM38DD-Profiler). Moreover both sensors work in continuous as well in discontinuous mode. The results show that quality of data is comparable, but the quantities are varying. This has to be considered for further interpretations and monitoring. In the next steps we have to determine how to convert relative data into absolute data since ECa data from different locations are not comparable to each other in a quantitative way. In the talk we will give an introduction in the application of EMI for soil monitoring, followed by an overview about comparability and reproducibility of data.

Prediction of terrestrial gamma dose rate based on geological formations and soil types in the Johor State, Malaysia.

PubMed

Saleh, Muneer Aziz; Ramli, Ahmad Termizi; bin Hamzah, Khaidzir; Alajerami, Yasser; Moharib, Mohammed; Saeed, Ismael

2015-10-01

This study aims to predict and estimate unmeasured terrestrial gamma dose rate (TGDR) using statistical analysis methods to derive a model from the actual measurement based on geological formation and soil type. The measurements of TGDR were conducted in the state of Johor with a total of 3873 measured points which covered all geological formations, soil types and districts. The measurements were taken 1 m above the soil surface using NaI [Ti] detector. The measured gamma dose rates ranged from 9 nGy h(-1) to 1237 nGy h(-1) with a mean value of 151 nGy h(-1). The data have been normalized to fit a normal distribution. Tests of significance were conducted among all geological formations and soil types, using the unbalanced one way ANOVA. The results indicated strong significant differences due to the different geological formations and soil types present in Johor State. Pearson Correlation was used to measure the relations between gamma dose rate based on geological formation and soil type (D(G,S)) with the gamma dose rate based on geological formation (D(G)) or soil type (D(s)). A very good correlation was found between D(G,S) and D(G) or D(G,S) and D(s). A total of 118 pairs of geological formations and soil types were used to derive the statistical contribution of geological formations and soil types to gamma dose rates. The contribution of the gamma dose rate from geological formation and soil type were found to be 0.594 and 0.399, respectively. The null hypotheses were accepted for 83% of examined data, therefore, the model could be used to predict gamma dose rates based on geological formation and soil type information. Copyright © 2015 Elsevier Ltd. All rights reserved.

Response of runoff and soil loss to reforestation and rainfall type in red soil region of southern China.

PubMed

Huang, Zhigang; Ouyang, Zhiyun; Li, Fengrui; Zheng, Hua; Wang, Xiaoke

2010-01-01

To evaluate the long-term effects of reforestation types on soil erosion on degraded land, vegetation and soil properties under conventional sloping farmland (CSF) and three different reforestation types including a Pinus massoniana secondary forest (PSF), an Eucommia ulmoides artificial economic forest (EEF) and a natural succession type forest (NST), were investigated at runoff plot scale over a six-year period in a red soil region of southern China. One hundred and thirty erosive rainfall events generating runoff in plots were grouped into four rainfall types by means of K-mean clustering method. Erosive rainfall type I is the dominant rainfall type. The amount of runoff and the soil loss under erosive rainfall type III were the most, followed by rain-fall type II, IV and I. Compared with CSF treatment, reforestation treatments decreased the average annual runoff depth and the soil loss by 25.5%-61.8% and 93.9%-96.2% during the study period respectively. Meanwhile, runoff depth at PSF and EEF treatments was significantly lower than that in NST treatment, but no significant difference existed in soil erosion modulus among the three reforestation treatments. This is mainly due to the improved vegetation properties (i.e., vegetation coverage, biomass of above- and below-ground and litter-fall mass) and soil properties (i.e., bulk density, total porosity, infiltration rate and organic carbon content) in the three reforestation treatments compared to CSF treatment. The PSF and EEF are recommended as the preferred reforestation types to control runoff and soil erosion in the red soil region of southern China, with the NST potentially being used as an important supplement.

Effect of the soil type on the microbiome in the rhizosphere of field-grown lettuce.

PubMed

Schreiter, Susanne; Ding, Guo-Chun; Heuer, Holger; Neumann, Günter; Sandmann, Martin; Grosch, Rita; Kropf, Siegfried; Smalla, Kornelia

2014-01-01

The complex and enormous diversity of microorganisms associated with plant roots is important for plant health and growth and is shaped by numerous factors. This study aimed to unravel the effects of the soil type on bacterial communities in the rhizosphere of field-grown lettuce. We used an experimental plot system with three different soil types that were stored at the same site for 10 years under the same agricultural management to reveal differences directly linked to the soil type and not influenced by other factors such as climate or cropping history. Bulk soil and rhizosphere samples were collected 3 and 7 weeks after planting. The analysis of 16S rRNA gene fragments amplified from total community DNA by denaturing gradient gel electrophoresis and pyrosequencing revealed soil type dependent differences in the bacterial community structure of the bulk soils and the corresponding rhizospheres. The rhizosphere effect differed depending on the soil type and the plant growth developmental stage. Despite the soil type dependent differences in the bacterial community composition several genera such as Sphingomonas, Rhizobium, Pseudomonas, and Variovorax were significantly increased in the rhizosphere of lettuce grown in all three soils. The number of rhizosphere responders was highest 3 weeks after planting. Interestingly, in the soil with the highest numbers of responders the highest shoot dry weights were observed. Heatmap analysis revealed that many dominant operational taxonomic units were shared among rhizosphere samples of lettuce grown in diluvial sand, alluvial loam, and loess loam and that only a subset was increased in relative abundance in the rhizosphere compared to the corresponding bulk soil. The findings of the study provide insights into the effect of soil types on the rhizosphere microbiome of lettuce.

Effect of the soil type on the microbiome in the rhizosphere of field-grown lettuce

PubMed Central

Schreiter, Susanne; Ding, Guo-Chun; Heuer, Holger; Neumann, Günter; Sandmann, Martin; Grosch, Rita; Kropf, Siegfried; Smalla, Kornelia

2014-01-01

The complex and enormous diversity of microorganisms associated with plant roots is important for plant health and growth and is shaped by numerous factors. This study aimed to unravel the effects of the soil type on bacterial communities in the rhizosphere of field-grown lettuce. We used an experimental plot system with three different soil types that were stored at the same site for 10 years under the same agricultural management to reveal differences directly linked to the soil type and not influenced by other factors such as climate or cropping history. Bulk soil and rhizosphere samples were collected 3 and 7 weeks after planting. The analysis of 16S rRNA gene fragments amplified from total community DNA by denaturing gradient gel electrophoresis and pyrosequencing revealed soil type dependent differences in the bacterial community structure of the bulk soils and the corresponding rhizospheres. The rhizosphere effect differed depending on the soil type and the plant growth developmental stage. Despite the soil type dependent differences in the bacterial community composition several genera such as Sphingomonas, Rhizobium, Pseudomonas, and Variovorax were significantly increased in the rhizosphere of lettuce grown in all three soils. The number of rhizosphere responders was highest 3 weeks after planting. Interestingly, in the soil with the highest numbers of responders the highest shoot dry weights were observed. Heatmap analysis revealed that many dominant operational taxonomic units were shared among rhizosphere samples of lettuce grown in diluvial sand, alluvial loam, and loess loam and that only a subset was increased in relative abundance in the rhizosphere compared to the corresponding bulk soil. The findings of the study provide insights into the effect of soil types on the rhizosphere microbiome of lettuce. PMID:24782839

Determinants of arbuscular mycorrhizal communities - soil properties or land use?

NASA Astrophysics Data System (ADS)

Jansa, J.; Erb, A.; Oberholzer, H.-R.; Šmilauer, P.; Egli, S.

2012-04-01

Arbuscular mycorrhizal (AM) fungi accompanied terrestrial plants since some 500 million years of their evolution and are now widespread in all continents and virtually all soils of the world. They establish symbiotic interactions with a majority of extant higher plant species including most economically important plants. They are heavily implicated in plant nutrition, plant-soil carbon cycling, and tolerance to environmental stresses. Under field conditions, AM fungi usually form multispecies communities both in the soils and in plant roots, and it is becoming well established that various human interventions like cropping, crop rotation, tillage, and fertilization may all drive changes in the community composition of these fungi and, consequently, in the symbiotic benefits to the plants. Most of current evidence is stemming from individual short and long-term field trials, and the different studies usually employed diverse approaches, limiting the comparability of results across sites. Large scale sampling designs using unified research methods across different soil types and land use systems have hardly been employed so far. However, this would be imperative to allow direct comparisons of the effects of various environmental conditions (soil type, climate) and human land use practices on the indigenous soil-borne symbiotic microbes in general and the AM fungi in particular. To contribute to filling this gap, we conducted molecular profiling of AM communities in more than 150 Swiss agricultural soils, developed on a range of parent materials, covering a wide range of soil properties such as pH value, texture, carbon content and altitude, and including highly productive fields through alpine pastures. This study indicated strong correlations between AM fungal community patterns and features like soil pH and texture, as well as some consistent shifts in fungal communities due to specific aspects of land use like tillage or fertilization. These results thus appear to be of paramount importance for defining broadly valid thresholds in using AM communities as universal soil quality indicators. Expanding the current efforts on a global scale will be discussed.

Soil magnetic susceptibility mapping as a pollution and provenance tool: an example from southern New Zealand

NASA Astrophysics Data System (ADS)

Martin, A. P.; Ohneiser, C.; Turnbull, R. E.; Strong, D. T.; Demler, S.

2018-02-01

The presence or absence, degree and variation of heavy metal contamination in New Zealand soils is a matter of ongoing debate as it affects soil quality, agriculture and human health. In many instances, however, the soil heavy metal concentration data do not exist to answer these questions and the debate is ongoing. To address this, magnetic susceptibility (a common proxy for heavy metal contamination) values were measured in topsoil (0-30 cm) and subsoil (50-70 cm) at grid sites spaced at 8 km intervals across ca. 20 000 km2 of southern New Zealand. Samples were measured for both mass- and volume-specific magnetic susceptibility, with results being strongly, positively correlated. Three different methods of determining anomalies were applied to the data including the topsoil-subsoil difference method, Tukey boxplot method and geoaccumulation index method, with each method filtering out progressively more anomalies. Additional soil magnetic (hysteresis, isothermal remanence and thermomagnetic) measurements were made on a select subset of samples from anomalous sites. Magnetite is the dominant remanence carrying mineral, and magnetic susceptibility is governed by that minerals concentration in soils, rather than mineral type. All except two anomalous sites have a dominant geogenic source (cf. anthropogenic). By proxy, heavy metal contamination in southern New Zealand soils is minimal, making them relatively pristine. The provenance of the magnetic minerals in the anomalous sites can be traced back to likely sources in outcrops of igneous rocks within the same catchment, terrane or rock type: a distance of <100 km but frequently <1 km. Soil provenance is a key step when mapping element or isotopic distribution, vectoring to mineralization or studying soil for agricultural suitability, water quality or environmental regulation. Measuring soil magnetic susceptibility is a useful, quick and inexpensive tool that usefully supplements soil geochemical data.

The geographic concentration of blue carbon in the continental US

NASA Astrophysics Data System (ADS)

Feagin, R. A.; Hinson, A.

2014-12-01

Salt water wetlands have the potential to be bought and sold as relatively rich reservoirs of carbon in the context of sequestration projects. However, little is known about the geographic distribution of this potential, and no coarse scale investigation has addressed this ecosystem service at the continental scale. Our objective was to determine blue carbon stocks and flux in coastal wetland soils in the United States and categorize the potential for projects by estuarine basin, state, and wetland type. We linked National Wetlands Inventory (NWI) data with the Soil Survey Geographic Database (SSURGO) through spatial analysis within a Geographic Information System (GIS). We then calculated and mapped soil organic carbon across the continental US. Results were filtered by state, estuarine basin, wetland type, and accumulation rate, and ranking lists for each categorization were produced. The results showed that belowground carbon accumulation is concentrated in specific regions, with the richest and largest reservoirs in the Gulf and Atlantic southeastern estuaries, for example mangrove zones in Florida. Salt marshes on the southern Pacific Coast were relatively low in carbon due to small areas of coverage and the presence of sandy and inorganic soil. The geomorphic position of a wetland within a given estuary, for example on an exposed barrier island versus recessed towards inflowing headwaters, accounted for a greater degree of soil carbon variation than the wetland type, for example woody mangroves versus herbaceous marshes. The potential of a blue carbon sequestration project in relation to its location could be influential in determining wetland policy, conservation, and restoration in the coming decades.

Effects of Soil Type on the Damage Potential of Meloidogyne incognita on Soybean.

PubMed

Windham, G L; Barker, K R

1986-07-01

Effects of soil type on the reproduction and damage potential of Meloidogyne incognita on soybean, Glycine max (L.) Merr., were determined at five locations in North Carolina, including one site where plots with six soil types were established. M. incognita reproduced readily on a susceptible soybean cultivar in most soil types, with somewhat limited reproduction in muck soils. The relationship between initial population densities and yield varied among soil types and nematode populations. Yield losses were greatest in sandy and muck soil types, with less nematode damage occurring in the clay soil types. A North Carolina and a Georgia population of M. incognita differed greatly in their ability to reproduce on soybean and suppress growth. The North Carolina population had a moderate effect on yield in 1981 and only a slight effect in 1982. In contrast, a Georgia population severely limited soybean growth and yield at lower initial population densities in 1983, Initial population densities of the nematodes and physical and chemical edaphic factors accounted for much of the variation of soybean yield and nematode reproduction.

Epizootiology of cranial abscess disease in white-tailed deer (Odocoileus virginianus) of Georgia, USA

USGS Publications Warehouse

Cohen, Bradley S.; Belser, Emily H.; Killmaster, Charlie H.; Bowers, John W.; Irwin, Brian J.; Yabsley, Michael J.; Miller, Karl V.

2015-01-01

Intracranial abscess disease is a cause of natural mortality for mature male white-tailed deer (Odocoileus virginianus). Most cases of abscesses are associated with bacterial infection byTrueperella (Arcanobacterium) pyogenes, but a complete understanding of the epidemiology of this disease is lacking. We quantified the effects of individual characteristics, site-specific herd demographics, land cover, and soil variables in estimating the probability of this disease. We examined 7,545 white-tailed deer from 60 sites throughout Georgia US for signs of cranial abscesses, the predecessor of intracranial abscesses, and recorded the presence or absence of cranial abscesses for each individual examined. We detected no cranial abscesses in 2,562 female deer but 91 abscesses in 4,983 male deer examined (1.8%). A generalized linear mixed model, treating site as a random effect, was used to examine several potential explanatory risk factors including site-level landscape and soil characteristics (soil and forest type), demographic factors (deer density and male to female ratio), and individual host factors (deer sex and age). Model results indicated that the probability of a male having a cranial abscess increased with age and that adult sex ratio (male:female) was positively associated with this disease. Site-specific variables for land cover and soil types were not strongly associated with observations of the disease at the scale measured and a large amount of among-site variability remained. Given the demonstrated effect of age, gender, and local sex ratios but the remaining unexplained spatial variability, additional investigation into spatiotemporal variation of the presumed bacterial causative agent of cranial abscesses appears warranted.

Impact of Long-Term Diesel Contamination on Soil Microbial Community Structure

PubMed Central

Maphosa, Farai; Morillo, Jose A.; Abu Al-Soud, Waleed; Langenhoff, Alette A. M.; Grotenhuis, Tim; Rijnaarts, Huub H. M.; Smidt, Hauke

2013-01-01

Microbial community composition and diversity at a diesel-contaminated railway site were investigated by pyrosequencing of bacterial and archaeal 16S rRNA gene fragments to understand the interrelationships among microbial community composition, pollution level, and soil geochemical and physical properties. To this end, 26 soil samples from four matrix types with various geochemical characteristics and contaminant concentrations were investigated. The presence of diesel contamination significantly impacted microbial community composition and diversity, regardless of the soil matrix type. Clean samples showed higher diversity than contaminated samples (P < 0.001). Bacterial phyla with high relative abundances in all samples included Proteobacteria, Firmicutes, Actinobacteria, Acidobacteria, and Chloroflexi. High relative abundances of Archaea, specifically of the phylum Euryarchaeota, were observed in contaminated samples. Redundancy analysis indicated that increased relative abundances of the phyla Chloroflexi, Firmicutes, and Euryarchaeota correlated with the presence of contamination. Shifts in the chemical composition of diesel constituents across the site and the abundance of specific operational taxonomic units (OTUs; defined using a 97% sequence identity threshold) in contaminated samples together suggest that natural attenuation of contamination has occurred. OTUs with sequence similarity to strictly anaerobic Anaerolineae within the Chloroflexi, as well as to Methanosaeta of the phylum Euryarchaeota, were detected. Anaerolineae and Methanosaeta are known to be associated with anaerobic degradation of oil-related compounds; therefore, their presence suggests that natural attenuation has occurred under anoxic conditions. This research underscores the usefulness of next-generation sequencing techniques both to understand the ecological impact of contamination and to identify potential molecular proxies for detection of natural attenuation. PMID:23144139

Introduction of digital soil mapping techniques for the nationwide regionalization of soil condition in Hungary; the first results of the DOSoReMI.hu (Digital, Optimized, Soil Related Maps and Information in Hungary) project

NASA Astrophysics Data System (ADS)

Pásztor, László; Laborczi, Annamária; Szatmári, Gábor; Takács, Katalin; Bakacsi, Zsófia; Szabó, József; Dobos, Endre

2014-05-01

Due to the former soil surveys and mapping activities significant amount of soil information has accumulated in Hungary. Present soil data requirements are mainly fulfilled with these available datasets either by their direct usage or after certain specific and generally fortuitous, thematic and/or spatial inference. Due to the more and more frequently emerging discrepancies between the available and the expected data, there might be notable imperfection as for the accuracy and reliability of the delivered products. With a recently started project (DOSoReMI.hu; Digital, Optimized, Soil Related Maps and Information in Hungary) we would like to significantly extend the potential, how countrywide soil information requirements could be satisfied in Hungary. We started to compile digital soil related maps which fulfil optimally the national and international demands from points of view of thematic, spatial and temporal accuracy. The spatial resolution of the targeted countrywide, digital, thematic maps is at least 1:50.000 (approx. 50-100 meter raster resolution). DOSoReMI.hu results are also planned to contribute to the European part of GSM.net products. In addition to the auxiliary, spatial data themes related to soil forming factors and/or to indicative environmental elements we heavily lean on the various national soil databases. The set of the applied digital soil mapping techniques is gradually broadened incorporating and eventually integrating geostatistical, data mining and GIS tools. In our paper we will present the first results. - Regression kriging (RK) has been used for the spatial inference of certain quantitative data, like particle size distribution components, rootable depth and organic matter content. In the course of RK-based mapping spatially segmented categorical information provided by the SMUs of Digital Kreybig Soil Information System (DKSIS) has been also used in the form of indicator variables. - Classification and regression trees (CART) were used to improve the spatial resolution of category-type soil maps (thematic downscaling), like genetic soil type and soil productivity maps. The approach was justified by the fact that certain thematic soil maps are not available in the required scale. Decision trees were applied for the understanding of the soil-landscape models involved in existing soil maps, and for the post-formalization of survey/compilation rules. The relationships identified and expressed in decision rules made the creation of spatially refined maps possible with the aid of high resolution environmental auxiliary variables. Among these co-variables, a special role was played by larger scale spatial soil information with diverse attributes. As a next step, the testing of random forests for the same purposes has been started. - Due to the simultaneous richness of available Hungarian legacy soil data, spatial inference methods and auxiliary environmental information, there is a high versatility of possible approaches for the compilation of a given soil (related) map. This suggests the opportunity of optimization. For the creation of an object specific soil (related) map with predefined parameters (resolution, accuracy, reliability etc.) one might intend to identify the optimum set of soil data, method and auxiliary co-variables optimized for the resources (data costs, computation requirements etc.). The first findings on the inclusion and joint usage of spatial soil data as well as on the consistency of various evaluations of the result maps will be also presented. Acknowledgement: Our work has been supported by the Hungarian National Scientific Research Foundation (OTKA, Grant No. K105167).

Responses of soil N-fixing bacteria communities to invasive plant species under different types of simulated acid deposition

NASA Astrophysics Data System (ADS)

Wang, Congyan; Zhou, Jiawei; Jiang, Kun; Liu, Jun; Du, Daolin

2017-06-01

Biological invasions have incurred serious threats to native ecosystems in China, and soil N-fixing bacteria communities (SNB) may play a vital role in the successful plant invasion. Meanwhile, anthropogenic acid deposition is increasing in China, which may modify or upgrade the effects that invasive plant species can cause on SNB. We analyzed the structure and diversity of SNB by means of new generation sequencing technology in soils with different simulated acid deposition (SAD), i.e., different SO4 2- to NO3 - ratios, and where the invasive ( Amaranthus retroflexus L.) and the native species ( Amaranthus tricolor L.) grew mixed or isolated for 3 months. A. retroflexus itself did not exert significant effects on the diversity and richness of SNB but did it under certain SO4 2- to NO3 - ratios. Compared to soils where the native species grew isolated, the soils where the invasive A. retroflexus grew isolated showed lower relative abundance of some SNB classes under certain SAD treatments. Some types of SAD can alter soil nutrient content which in turn could affect SNB diversity and abundance. Specifically, greater SO4 2- to NO3 - ratios tended to have more toxic effects on SNB likely due to the higher exchange capacity of hydroxyl groups (OH-) between SO4 2- and NO3 -. As a conclusion, it can be expected a change in the structure of SNB after A. retroflexus invasion under acid deposition rich in sulfuric acid. This change may create a plant soil feedback favoring future A. retroflexus invasions.

Responses of soil N-fixing bacteria communities to invasive plant species under different types of simulated acid deposition.

PubMed

Wang, Congyan; Zhou, Jiawei; Jiang, Kun; Liu, Jun; Du, Daolin

2017-06-01

Biological invasions have incurred serious threats to native ecosystems in China, and soil N-fixing bacteria communities (SNB) may play a vital role in the successful plant invasion. Meanwhile, anthropogenic acid deposition is increasing in China, which may modify or upgrade the effects that invasive plant species can cause on SNB. We analyzed the structure and diversity of SNB by means of new generation sequencing technology in soils with different simulated acid deposition (SAD), i.e., different SO 4 2- to NO 3 - ratios, and where the invasive (Amaranthus retroflexus L.) and the native species (Amaranthus tricolor L.) grew mixed or isolated for 3 months. A. retroflexus itself did not exert significant effects on the diversity and richness of SNB but did it under certain SO 4 2- to NO 3 - ratios. Compared to soils where the native species grew isolated, the soils where the invasive A. retroflexus grew isolated showed lower relative abundance of some SNB classes under certain SAD treatments. Some types of SAD can alter soil nutrient content which in turn could affect SNB diversity and abundance. Specifically, greater SO 4 2- to NO 3 - ratios tended to have more toxic effects on SNB likely due to the higher exchange capacity of hydroxyl groups (OH - ) between SO 4 2- and NO 3 - . As a conclusion, it can be expected a change in the structure of SNB after A. retroflexus invasion under acid deposition rich in sulfuric acid. This change may create a plant soil feedback favoring future A. retroflexus invasions.

Soil hydrological and soil property changes resulting from termite activity on agricultural fields in Burkina Faso

NASA Astrophysics Data System (ADS)

Mettrop, I.; Cammeraat, L. H.; Verbeeten, E.

2009-04-01

Termites are important ecosystem-engineers in subtropical and tropical regions. The effect of termite activity affecting soil infiltration is well documented in the Sahelian region. Most studies find increased infiltration rates on surfaces that are affected by termite activity in comparison to crusted areas showing non-termite presence. Crusted agricultural fields in the Sanmatenga region in Burkina Faso with clear termite activity were compared to control fields without visual ground dwelling termite activity. Fine scale rainfall simulations were carried out on crusted termite affected and control sites. Furthermore soil moisture change, bulk density, soil organic matter as well as general soil characteristics were studied. The top soils in the study area were strongly crusted (structural crust) after the summer rainfall and harvest of millet. They have a loamy sand texture underlain by a shallow sandy loam Bt horizon. The initial soil moisture conditions were significantly higher on the termite plots when compared to control sites. It was found that the amount of runoff produced on the termite plots was significantly higher, and also the volumetric soil moisture content after the experiments was significantly lower if compared to the control plots. Bulk density showed no difference whereas soil organic matter was significantly higher under termite affected areas, in comparison to the control plots. Lab tests showed no significant difference in hydrophobic behavior of the topsoil and crust material. Micro and macro-structural properties of the topsoil did not differ significantly between the termite sites and the control sites. The texture of the top 5 cm of the soil was also found to be not significantly different. The infiltration results are contradictory to the general literature, which reports increased infiltration rates after prolonged termite activity although mostly under different initial conditions. The number of nest entrances was clearly higher in the termite areas, but apparently did not significantly affect infiltration. The increased soil organic matter contents in the termite affected areas however, are as expected from literature, but did not improve soil aggregation which would be expected given the importance of organic matter in soil aggregation in this type of soils. One of the explanations for the reduced infiltration rates might be that termites bring clay from the finer textured subsoil to the surface to build casts over the organic material on the surface (mainly millet stems). It is speculated that the excavated clay material could be involved in crust formation, only present is in the upper 0.5 cm of the soil crust, which is enough to block pores in the crust surface, hampering infiltration. The topsoil aggregates are slaking under the summer rainfall and the increase in fine textured material, excavated by the termites, could be incorporated into the crust and reduce infiltration. Furthermore this specific effect might also be related to the type of termite involved, as impacts from ecosystem engineers on their environment is highly dependent on the specific species involved.

The quest for atmospheric methane oxidizers in forest soils.

PubMed

Kolb, Steffen

2009-10-01

Aerobic methanotrophs in forest soils are the largest biological sink for atmospheric methane (CH4 ). Community structures in 53 soils from Europe, Russia, North and South America, Asia and New Zealand located in boreal, temperate and tropical forests were analysed and maximal abundances of 2.1 × 10(7) methanotrophs g(-1)   DW were measured. In acidic soils, the most frequently detected pmoA genotypes were Upland Soil Cluster α (USCα) and Methylocystis spp. Phospholipid fatty acids that were labelled by consumption of (14/13) CH4 suggested the activity of type II methanotrophs. Cluster 1 (Methylocystaceae), USCγ and Methylocystis spp. were frequently detected genotypes in pH-neutral soils. Genotypes with ambiguous functional affiliation were co-detected (Clusters MR1, RA21, 2) and may represent aerobic methanotrophs, ammonia oxidizers or enzymes with an unknown function. The physiological traits of atmospheric CH4 oxidizers are largely unknown because organisms possessing the key forest soil pmoA genotypes (USCα, USCγ, Cluster 1) have not been cultivated. Some methanotrophic strains belonging to the family Methylocystaceae have been shown to oxidize CH4 at atmospheric mixing ratios. Methylocystis strain SC2 was found to have an alternative particulate CH4 monooxygenase responsible for CH4 oxidation at atmospheric mixing ratios. pH, forest type and temperature might be environmental factors that shape methanotrophic communities in forest soils. However, specific effects on individual species are largely unknown, and only a limited number of studies have addressed environmental controls of methanotrophic diversity, pointing to the need for future research in this area. © 2009 Society for Applied Microbiology and Blackwell Publishing Ltd.

Assessment of Bacterial bph Gene in Amazonian Dark Earth and Their Adjacent Soils

PubMed Central

Brossi, Maria Julia de Lima; Mendes, Lucas William; Germano, Mariana Gomes; Lima, Amanda Barbosa; Tsai, Siu Mui

2014-01-01

Amazonian Anthrosols are known to harbour distinct and highly diverse microbial communities. As most of the current assessments of these communities are based on taxonomic profiles, the functional gene structure of these communities, such as those responsible for key steps in the carbon cycle, mostly remain elusive. To gain insights into the diversity of catabolic genes involved in the degradation of hydrocarbons in anthropogenic horizons, we analysed the bacterial bph gene community structure, composition and abundance using T-RFLP, 454-pyrosequencing and quantitative PCR essays, respectively. Soil samples were collected in two Brazilian Amazon Dark Earth (ADE) sites and at their corresponding non-anthropogenic adjacent soils (ADJ), under two different land use systems, secondary forest (SF) and manioc cultivation (M). Redundancy analysis of T-RFLP data revealed differences in bph gene structure according to both soil type and land use. Chemical properties of ADE soils, such as high organic carbon and organic matter, as well as effective cation exchange capacity and pH, were significantly correlated with the structure of bph communities. Also, the taxonomic affiliation of bph gene sequences revealed the segregation of community composition according to the soil type. Sequences at ADE sites were mostly affiliated to aromatic hydrocarbon degraders belonging to the genera Streptomyces, Sphingomonas, Rhodococcus, Mycobacterium, Conexibacter and Burkholderia. In both land use sites, shannon's diversity indices based on the bph gene data were higher in ADE than ADJ soils. Collectively, our findings provide evidence that specific properties in ADE soils shape the structure and composition of bph communities. These results provide a basis for further investigations focusing on the bio-exploration of novel enzymes with potential use in the biotechnology/biodegradation industry. PMID:24927167

Assessment of bacterial bph gene in Amazonian dark earth and their adjacent soils.

PubMed

Brossi, Maria Julia de Lima; Mendes, Lucas William; Germano, Mariana Gomes; Lima, Amanda Barbosa; Tsai, Siu Mui

2014-01-01

Amazonian Anthrosols are known to harbour distinct and highly diverse microbial communities. As most of the current assessments of these communities are based on taxonomic profiles, the functional gene structure of these communities, such as those responsible for key steps in the carbon cycle, mostly remain elusive. To gain insights into the diversity of catabolic genes involved in the degradation of hydrocarbons in anthropogenic horizons, we analysed the bacterial bph gene community structure, composition and abundance using T-RFLP, 454-pyrosequencing and quantitative PCR essays, respectively. Soil samples were collected in two Brazilian Amazon Dark Earth (ADE) sites and at their corresponding non-anthropogenic adjacent soils (ADJ), under two different land use systems, secondary forest (SF) and manioc cultivation (M). Redundancy analysis of T-RFLP data revealed differences in bph gene structure according to both soil type and land use. Chemical properties of ADE soils, such as high organic carbon and organic matter, as well as effective cation exchange capacity and pH, were significantly correlated with the structure of bph communities. Also, the taxonomic affiliation of bph gene sequences revealed the segregation of community composition according to the soil type. Sequences at ADE sites were mostly affiliated to aromatic hydrocarbon degraders belonging to the genera Streptomyces, Sphingomonas, Rhodococcus, Mycobacterium, Conexibacter and Burkholderia. In both land use sites, shannon's diversity indices based on the bph gene data were higher in ADE than ADJ soils. Collectively, our findings provide evidence that specific properties in ADE soils shape the structure and composition of bph communities. These results provide a basis for further investigations focusing on the bio-exploration of novel enzymes with potential use in the biotechnology/biodegradation industry.

Root Type-Specific Reprogramming of Maize Pericycle Transcriptomes by Local High Nitrate Results in Disparate Lateral Root Branching Patterns1[OPEN

PubMed Central

Lithio, Andrew

2016-01-01

The adaptability of root system architecture to unevenly distributed mineral nutrients in soil is a key determinant of plant performance. The molecular mechanisms underlying nitrate dependent plasticity of lateral root branching across the different root types of maize are only poorly understood. In this study, detailed morphological and anatomical analyses together with cell type-specific transcriptome profiling experiments combining laser capture microdissection with RNA-seq were performed to unravel the molecular signatures of lateral root formation in primary, seminal, crown, and brace roots of maize (Zea mays) upon local high nitrate stimulation. The four maize root types displayed divergent branching patterns of lateral roots upon local high nitrate stimulation. In particular, brace roots displayed an exceptional architectural plasticity compared to other root types. Transcriptome profiling revealed root type-specific transcriptomic reprogramming of pericycle cells upon local high nitrate stimulation. The alteration of the transcriptomic landscape of brace root pericycle cells in response to local high nitrate stimulation was most significant. Root type-specific transcriptome diversity in response to local high nitrate highlighted differences in the functional adaptability and systemic shoot nitrogen starvation response during development. Integration of morphological, anatomical, and transcriptomic data resulted in a framework underscoring similarity and diversity among root types grown in heterogeneous nitrate environments. PMID:26811190

Geochemical patterns in soils of the karst region, Croatia

USGS Publications Warehouse

Prohic, E.; Hausberger, G.; Davis, J.C.

1997-01-01

Soil samples were collected at 420 locations in a 5-km grid pattern in the Istria and Gorski Kotar areas of Croatia, and on the Croatian islands of Cres, Rab and Krk, in order to relate geochemical variation in the soils to underlying differences in geology, bedrock lithology, soil type, environment and natural versus anthropogenic influences. Specific objectives included assessment of possible agricultural and industrial sources of contamination, especially from airborne effluent emitted by a local power plant. The study also tested the adequacy of a fixed-depth soil sampling procedure developed for meager karstic soils. Although 40 geochemical variables were analyzed, only 15 elements and 5 radionuclides are common to all the sample locations. These elements can be divided into three groups: (1) those of mostly anthropogenic origin -Pb, V, Cu and Cr; (2) those of mixed origin - radionuclides and Zn; and (3) those of mostly geogene origin -Ba, Sr, Ti, Al, Na, Ca, Mg, Fe, Mn, Ni and Co. Variation in Pb shows a strong correlation with the pattern of road traffic in Istria. The distributions of Ca, Na and Mg in the flysch basins of southern Istria and Slovenia are clearly distinguishable from the distributions of these elements in the surrounding carbonate terrains, a consequence of differences in bedrock permeability, type of drainage and pH. The spatial pattern of Cs from the Chernobyl nuclear power plant accident reflects almost exclusively the precipitation in Istria during the days immediately after the explosion. ?? 1997 Elsevier Science B.V.

[Vertical variation in stoichiometric relationships of soil carbon, nitrogen and phosphorus in five forest types in the Maoershan region, Northeast China.

PubMed

Zhang, Tai Dong; Wang, Chuan Kuan; Zhang, Quan Zhi

2017-10-01

Five forests under diverse site conditions but under identical climate in the Maoershan region of Northeast China were sampled for measuring contents of soil carbon (C), nitrogen (N), and phosphorus (P), soil bulk density, and soil thickness by soil profile horizons. The stands included two plantations (i.e., Pinus koraiensis and Larix gmelinii plantations) and three broadleaved forests (i.e., Quercus mongolica stand, Populus davidiana Betula platyphylla mixed stand, and hardwood stand). Our aim was to examine vertical distribution of the content, density, and stoichio metry of soil C, N and P for the five forest types. The results showed that the contents and densities of soil C, N and P differed significantly among the forest types, with the maxima of the soil C and N at both O and A horizons occurring in the hardwood stand. The contents of C and N decreased significantly with increasing soil depth in all the stands. P content decreased significantly only in the broadleaved stands, and P content had no significant difference among different soil layers in the coniferous stands. The soil C/N at the A horizon, N/P at the O horizon, and the C/P at A and B horizons were significantly different among the forest types. The soil C and N linearly correlated significantly across all the forest types without significant differences in the slopes and intercepts, and the soil N and P, or the soil C and P correlated significantly only in the broadleaved stands. This result suggested that the C-N coupling relationship tended to converge across the forest types, and the N-P and C-P relationships varied with forest types.

Comprehensive Areal Model of Earthquake-Induced Landslides: Technical Specification and User Guide

USGS Publications Warehouse

Miles, Scott B.; Keefer, David K.

2007-01-01

This report describes the complete design of a comprehensive areal model of earthquakeinduced landslides (CAMEL). This report presents the design process, technical specification of CAMEL. It also provides a guide to using the CAMEL source code and template ESRI ArcGIS map document file for applying CAMEL, both of which can be obtained by contacting the authors. CAMEL is a regional-scale model of earthquake-induced landslide hazard developed using fuzzy logic systems. CAMEL currently estimates areal landslide concentration (number of landslides per square kilometer) of six aggregated types of earthquake-induced landslides - three types each for rock and soil.

Soil Organic Matter (SOM): Molecular Simulations

DOE Office of Scientific and Technical Information (OSTI.GOV)

Andersen, Amity

Molecular simulation is a powerful tool used to gain an atomistic, molecular, and nanoscale level understanding of the structure, dynamics, and interactions from adsorption on minerals and assembly in aggregates of soil organic matter (SOM). Given the importance of SOM fate and persistence in soils and the current knowledge gaps, applications of atomistic scale simulations to study the complex compounds in SOM and their interactions in self-assembled aggregates composed of different organic matter compounds and with mineral surfaces of different types common in soils are few and far between. Here, we describe various molecular simulation methods that are currently inmore » use in various areas and applicable to SOM research, followed by a brief survey of specific applications to SOM research and an illustration with our own recent efforts in this area. We conclude with an outlook and the challenges for future research in this area.« less

Soil-plant transfer models for metals to improve soil screening value guidelines valid for São Paulo, Brazil.

PubMed

Dos Santos-Araujo, Sabrina N; Swartjes, Frank A; Versluijs, Kees W; Moreno, Fabio Netto; Alleoni, Luís R F

2017-11-07

In Brazil, there is a lack of combined soil-plant data attempting to explain the influence of specific climate, soil conditions, and crop management on heavy metal uptake and accumulation by plants. As a consequence, soil-plant relationships to be used in risk assessments or for derivation of soil screening values are not available. Our objective in this study was to develop empirical soil-plant models for Cd, Cu, Pb, Ni, and Zn, in order to derive appropriate soil screening values representative of humid tropical regions such as the state of São Paulo (SP), Brazil. Soil and plant samples from 25 vegetable species in the production areas of SP were collected. The concentrations of metals found in these soil samples were relatively low. Therefore, data from temperate regions were included in our study. The soil-plant relations derived had a good performance for SP conditions for 8 out of 10 combinations of metal and vegetable species. The bioconcentration factor (BCF) values for Cd, Cu, Ni, Pb, and Zn in lettuce and for Cd, Cu, Pb, and Zn in carrot were determined under three exposure scenarios at pH 5 and 6. The application of soil-plant models and the BCFs proposed in this study can be an important tool to derive national soil quality criteria. However, this methodological approach includes data assessed under different climatic conditions and soil types and need to be carefully considered.

Spatially Resolved Carbon Isotope and Elemental Analyses of the Root-Rhizosphere-Soil System to Understand Below-ground Nutrient Interactions

NASA Astrophysics Data System (ADS)

Denis, E. H.; Ilhardt, P.; Tucker, A. E.; Huggett, N. L.; Rosnow, J. J.; Krogstad, E. J.; Moran, J.

2017-12-01

The intimate relationships between plant roots, rhizosphere, and soil are fostered by the release of organic compounds from the plant (through various forms of rhizodeposition) into soil and the simultaneous harvesting and delivery of inorganic nutrients from the soil to the plant. This project's main goal is to better understand the spatial controls on bi-directional nutrient exchange through the rhizosphere and how they impact overall plant health and productivity. Here, we present methods being developed to 1) spatially track the release and migration of plant-derived organics into the rhizosphere and soil and 2) map the local inorganic geochemical microenvironments within and surrounding the rhizosphere. Our studies focused on switchgrass microcosms containing soil from field plots at the Kellogg Biological Station (Hickory Corners, Michigan), which have been cropped with switchgrass for nearly a decade. We used a 13CO2 tracer to label our samples for both one and two diel cycles and tracked subsequent movement of labeled organic carbon using spatially specific δ13C analysis (with 50 µm resolution). The laser ablation-isotope ratio mass spectrometry (LA-IRMS) approach allowed us to map the extent of 13C-label migration into roots, rhizosphere, and surrounding soil. Preliminary results show the expected decrease of organic exudates with distance from a root and that finer roots (<0.1 mm) incorporated more 13C-label than thicker roots, which likely correlates to specific root growth rates. We are adapting both laser induced breakdown spectroscopy (LIBS) and laser ablation inductively coupled plasma mass spectrometry (LA-ICP-MS) to spatially map inorganic nutrient content in the exact same samples used for LA-IRMS analysis. Both of these methods provide rapid surface mapping of a wide range of elements (with high dynamic range) at 150 μm spatial resolution. Preliminary results show that, based on elemental content, we can distinguish between roots, rhizosphere, soil, and specific types of mineral grains within soil. Integrating spatially resolved analysis of photosynthate distribution with local geochemical microenvironments may reveal key properties of nutrient exchange hotspots that help direct overall plant health and productivity.

Soil specific re-calibration of water content sensors for a field-scale sensor network

NASA Astrophysics Data System (ADS)

Gasch, Caley K.; Brown, David J.; Anderson, Todd; Brooks, Erin S.; Yourek, Matt A.

2015-04-01

Obtaining accurate soil moisture data from a sensor network requires sensor calibration. Soil moisture sensors are factory calibrated, but multiple site specific factors may contribute to sensor inaccuracies. Thus, sensors should be calibrated for the specific soil type and conditions in which they will be installed. Lab calibration of a large number of sensors prior to installation in a heterogeneous setting may not be feasible, and it may not reflect the actual performance of the installed sensor. We investigated a multi-step approach to retroactively re-calibrate sensor water content data from the dielectric permittivity readings obtained by sensors in the field. We used water content data collected since 2009 from a sensor network installed at 42 locations and 5 depths (210 sensors total) within the 37-ha Cook Agronomy Farm with highly variable soils located in the Palouse region of the Northwest United States. First, volumetric water content was calculated from sensor dielectric readings using three equations: (1) a factory calibration using the Topp equation; (2) a custom calibration obtained empirically from an instrumented soil in the field; and (3) a hybrid equation that combines the Topp and custom equations. Second, we used soil physical properties (particle size and bulk density) and pedotransfer functions to estimate water content at saturation, field capacity, and wilting point for each installation location and depth. We also extracted the same reference points from the sensor readings, when available. Using these reference points, we re-scaled the sensor readings, such that water content was restricted to the range of values that we would expect given the physical properties of the soil. The re-calibration accuracy was assessed with volumetric water content measurements obtained from field-sampled cores taken on multiple dates. In general, the re-calibration was most accurate when all three reference points (saturation, field capacity, and wilting point) were represented in the sensor readings. We anticipate that obtaining water retention curves for field soils will improve the re-calibration accuracy by providing more precise estimates of saturation, field capacity, and wilting point. This approach may serve as an alternative method for sensor calibration in lieu of or to complement pre-installation calibration.

The contribution of edaphic heterogeneity to the evolution and diversity of Burseraceae trees in the western Amazon.

PubMed

Fine, Paul V A; Daly, Douglas C; Villa Muñoz, Gorky; Mesones, Italo; Cameron, Kenneth M

2005-07-01

Environmental heterogeneity in the tropics is thought to lead to specialization in plants and thereby contribute to the diversity of the tropical flora. We examine this idea with data on the habitat specificity of 35 western Amazonian species from the genera Protium, Crepidospermum, and Tetragastris in the monophyletic tribe Protieae (Burseraceae) mapped on a molecular-based phylogeny. We surveyed three edaphic habitats that occur throughout terra firme Amazonia: white-sand, clay, and terrace soils in eight forests across more than 2000 km in the western Amazon. Twenty-six of the 35 species were found to be associated with only one of three soil types, and no species was associated with all three habitats; this pattern of edaphic specialization was consistent across the entire region. Habitat association mapped onto the phylogenetic tree shows association with terrace soils to be the probable ancestral state in the group, with subsequent speciation events onto clay and white-sand soils. The repeated gain of clay association within the clade likely coincides with the emergence of large areas of clay soils in the Miocene deposited during the Andean uplift. Character optimizations revealed that soil association was not phylogenetically clustered for white-sand and clay specialists, suggesting repeated independent evolution of soil specificity is common within the Protieae. This phylogenetic analysis also showed that multiple cases of putative sister taxa with parapatric distributions differ in their edaphic associations, suggesting that edaphic heterogeneity was an important driver of speciation in the Protieae in the Amazon basin.

Vertical distribution of heavy metals associated with the coarse and medium sand fraction in the forest soils of European Russia

NASA Astrophysics Data System (ADS)

Samonova, Olga; Aseyeva, Elena

2015-04-01

To accurately model metal behavior in soils, studies on possible geochemical changes occurring within a specific grain-size fraction during pedogenesis are needed. In the present study we analyze concentrations and vertical distributions of heavy metals associated with the coarse and medium sand fraction (1-0.25mm) for soils in the middle Protva basin, situated in the mixed forest zone of European Russia. Two soil types were analyzed: well-differentiated sod-podzolic soils (podzoluvisols) with AEBtC-profile, the major soil type in the study area occupying the interfluve's sub-horizontal surfaces and gentle slopes; and poorly differentiated soddy soils of subordinate positions: soddy soils, soddy gleyic soils and soddy soils with buried fluvial soil horizons. In total 27 samples, collected from 4 soil profiles, were analyzed for Fe, Ti, Mn, Cu, Ni, Co, Cr, Zn, Pb and Zr contents in the partitioned coarse and medium sand fraction. The median concentrations calculated are for Fe - 4%, for Mn - 760 ppm; for Ti - 980 ppm; for Zr - 130 ppm; for Zn - 30 ppm; and for Cu, Pb, Co, Cr, Ni - 67, 13, 11, 38, 33 ppm, respectively. The metal concentrations in total sample population vary differently, with the variation coefficients diminishing from Mn (171%) and Fe (112%) to Zr, Ni and Pb (53%). Comparing the chemical composition of coarse and medium sand fractions in the vertical sequence of horizons within a soil profile showed that in the sod-podzolic soil developed on mantle loam metals are enriched in the sand fraction of the upper A and AE horizons. The second but less distinct maximum levels for Cu, Ni, Fe, Cr, Mn and Co were found in the subsoil with gleyic features (Cg horizon). In soddy soils developed on diluvium on the steep section of the slope the studied sand fraction generally showed larger amounts of metals in A and AC horizons. In similar soils with gleyic features the concentrations of Fe, Cr, Co, Ni, Cu are the highest in the uppermost horizon, while the levels of Mn, Pb, Ti, Zr are higher in the ACg horizon. In the genetically heterogeneous soil profile combining horizons typical for contemporary soddy soils and buried fluvial soils the metal concentrations depend on the genesis of the sand fraction, with higher concentrations found in the contemporary soil horizons and lower concentrations in the buried fluvial soils. Thus, our results imply that during soil formation, under the influence of soil and geochemical processes conditioned by a humid temperate climate, the composition of the sand fraction in relation to metal contents changes. In most cases the enrichment of the sand fraction with a wide spectrum of metals was found in upper soil horizons of the studied soil types where humus accumulation, active biogeochemical processes and sand grain weathering takes place. Periodic saturation of the soils with water might also have contributed to metal accumulation in the sand fraction through the formation of iron and manganese compounds which can serve as sinks for metals.

An investigation into the reactions of biochar in soil

DOE Office of Scientific and Technical Information (OSTI.GOV)

Joseph, Stephen; Camps-Arbestain, Marta; Lin, Yun

2010-10-12

Interactions between biochar, soil, microbes and plant roots may occur within a short period of time after application to the soil. The extent, rates and implications of these interactions, however, are far from being understood. This review includes a description of the properties of biochars and suggests possible reactions that may occur after the addition of biochars to soil. These include dissolution-precipitation, adsorption-desorption, acid-base and redox reactions. Special attention is given to reactions occurring within pores, and to interactions with roots, microorganisms and soil fauna. The examination of biochars (from chicken litter, greenwaste and paper mill sludges) weathered for onemore » and two years in an Australian Ferrosol provides evidence for some of the mechanisms described in this review and offers an insight to reactions at a molecular scale. These interactions are biochar- and site-specific. Therefore, suitable experimental trials combining biochar types and different pedoclimatic conditions are needed to determine the extent to which these reactions influence the potential of biochar as a soil amendment and C-sequestration tool.« less

Extremophilic and extremotolerant actinomycetes in different soil types

NASA Astrophysics Data System (ADS)

Zenova, G. M.; Manucharova, N. A.; Zvyagintsev, D. G.

2011-04-01

Problems on the resistance of soil actinomycetes to various environmental factors (pH, salinity, temperature, and moisture) are discussed. Actinomycetes as a special group of prokaryotes were revealed to have a greater range of tolerance to these factors than was thought earlier. The regularities of the distribution of extremophilic and extremotolerant actinomycetes developing in unusual for mycelial bacteria conditions, their structural-functional characteristics, and their taxonomic composition were determined. The predominance of acidophilic representatives of the Micromonospora genus in acid soils (typical peat, soddy-podzolic, and taiga podzol) and the haloalkaliphilic Streptomyces pluricilirescens and S. prunicolor species in desert saline soils are shown. The specific features of the actinomycete complexes on thermal fields of the weakly developed stratified volcanic soils are described. In these complexes, the thermophilic forms were represented only by species of the Micromonospora genus; and the mesophilic forms, by Microbispora species. In the periodically heated desert soils, among the thermophilic actinomycetes, representatives of rare Actinomadura, Saccharopolyspora and Streptosporangium genera along with Streptomyces species were indicated. The mechanisms of the resistance of the actinomycetes to the extreme environmental conditions are discussed.

Modeling forest development after fire disturbance: Climate, soil organic layer, and nitrogen jointly affect forest canopy species and long-term ecosystem carbon accumulation in the North American boreal forest

NASA Astrophysics Data System (ADS)

Trugman, A. T.; Fenton, N.; Bergeron, Y.; Xu, X.; Welp, L.; Medvigy, D.

2015-12-01

Soil organic layer dynamics strongly affect boreal forest development after fire. Field studies show that soil organic layer thickness exerts a species-specific control on propagule establishment in the North American boreal forest. On organic soils thicker than a few centimeters, all propagules are less able to recruit, but broadleaf trees recruit less effectively than needleleaf trees. In turn, forest growth controls organic layer accumulation through modulating litter input and litter quality. These dynamics have not been fully incorporated into models, but may be essential for accurate projections of ecosystem carbon storage. Here, we develop a data-constrained model for understanding boreal forest development after fire. We update the ED2 model to include new aspen and black spruce species-types, species-specific propagule survivorship dependent on soil organic layer depth, species-specific litter decay rates, dynamically accumulating moss and soil organic layers, and nitrogen fixation by cyanobacteria associated with moss. The model is validated against diverse observations ranging from monthly to centennial timescales and spanning a climate gradient in Alaska, central Canada, and Quebec. We then quantify differences in forest development that result from changes in organic layer accumulation, temperature, and nitrogen. We find that (1) the model accurately reproduces a range of observations throughout the North American boreal forest; (2) the presence of a thick organic layer results in decreased decomposition and decreased aboveground productivity, effects that can increase or decrease ecosystem carbon uptake depending on location-specific attributes; (3) with a mean warming of 4°C, some forests switch from undergoing succession to needleleaf forests to recruiting multiple cohorts of broadleaf trees, decreasing ecosystem accumulation by ~30% after 300 years; (4) the availability of nitrogen regulates successional dynamics such than broadleaf species are less able to compete with needleleaf trees under low nitrogen regimes. We conclude that a joint regulation between the soil organic layer, temperature, and nitrogen will likely play an important role in influencing boreal forests development after fire in future climates, and should be represented in models.

Application of stochastic models in identification and apportionment of heavy metal pollution sources in the surface soils of a large-scale region.

PubMed

Hu, Yuanan; Cheng, Hefa

2013-04-16

As heavy metals occur naturally in soils at measurable concentrations and their natural background contents have significant spatial variations, identification and apportionment of heavy metal pollution sources across large-scale regions is a challenging task. Stochastic models, including the recently developed conditional inference tree (CIT) and the finite mixture distribution model (FMDM), were applied to identify the sources of heavy metals found in the surface soils of the Pearl River Delta, China, and to apportion the contributions from natural background and human activities. Regression trees were successfully developed for the concentrations of Cd, Cu, Zn, Pb, Cr, Ni, As, and Hg in 227 soil samples from a region of over 7.2 × 10(4) km(2) based on seven specific predictors relevant to the source and behavior of heavy metals: land use, soil type, soil organic carbon content, population density, gross domestic product per capita, and the lengths and classes of the roads surrounding the sampling sites. The CIT and FMDM results consistently indicate that Cd, Zn, Cu, Pb, and Cr in the surface soils of the PRD were contributed largely by anthropogenic sources, whereas As, Ni, and Hg in the surface soils mostly originated from the soil parent materials.

Methanol oxidation by temperate soils and environmental determinants of associated methylotrophs

PubMed Central

Stacheter, Astrid; Noll, Matthias; Lee, Charles K; Selzer, Mirjam; Glowik, Beate; Ebertsch, Linda; Mertel, Ralf; Schulz, Daria; Lampert, Niclas; Drake, Harold L; Kolb, Steffen

2013-01-01

The role of soil methylotrophs in methanol exchange with the atmosphere has been widely overlooked. Methanol can be derived from plant polymers and be consumed by soil microbial communities. In the current study, methanol-utilizing methylotrophs of 14 aerated soils were examined to resolve their comparative diversities and capacities to utilize ambient concentrations of methanol. Abundances of cultivable methylotrophs ranged from 106–108 gsoilDW−1. Methanol dissimilation was measured based on conversion of supplemented 14C-methanol, and occurred at concentrations down to 0.002 μmol methanol gsoilDW−1. Tested soils exhibited specific affinities to methanol (a0s=0.01 d−1) that were similar to those of other environments suggesting that methylotrophs with similar affinities were present. Two deep-branching alphaproteobacterial genotypes of mch responded to the addition of ambient concentrations of methanol (⩽0.6 μmol methanol gsoilDW−1) in one of these soils. Methylotroph community structures were assessed by amplicon pyrosequencing of genes of mono carbon metabolism (mxaF, mch and fae). Alphaproteobacteria-affiliated genotypes were predominant in all investigated soils, and the occurrence of novel genotypes indicated a hitherto unveiled diversity of methylotrophs. Correlations between vegetation type, soil pH and methylotroph community structure suggested that plant–methylotroph interactions were determinative for soil methylotrophs. PMID:23254514

Laccase-catalyzed oxidation of iodide and formation of organically bound iodine in soils.

PubMed

Seki, Miharu; Oikawa, Jun-ichi; Taguchi, Taro; Ohnuki, Toshihiko; Muramatsu, Yasuyuki; Sakamoto, Kazunori; Amachi, Seigo

2013-01-02

Laccase oxidizes iodide to molecular iodine or hypoiodous acid, both of which are easily incorporated into natural soil organic matter. In this study, iodide sorption and laccase activity in 2 types of Japanese soil were determined under various experimental conditions to evaluate possible involvement of this enzyme in the sorption of iodide. Batch sorption experiment using radioactive iodide tracer ((125)I(-)) revealed that the sorption was significantly inhibited by autoclaving (121 °C, 40 min), heat treatment (80 and 100 °C, 10 min), γ-irradiation (30 kGy), N(2) gas flushing, and addition of reducing agents and general laccase inhibitors (KCN and NaN(3)). Interestingly, very similar tendency of inhibition was observed in soil laccase activity, which was determined using 2,2'-azino-bis(3-ethylbenzothiazoline-6-sulfonate) (ABTS) as a substrate. The partition coefficient (K(d): mL g(-1)) for iodide and specific activity of laccase in soils (Unit g(-1)) showed significant positive correlation in both soil samples. Addition of a bacterial laccase with an iodide-oxidizing activity to the soils strongly enhanced the sorption of iodide. Furthermore, the enzyme addition partially restored iodide sorption capacity of the autoclaved soil samples. These results suggest that microbial laccase is involved in iodide sorption on soils through the oxidation of iodide.

Filter Membrane Effects on Water-Extractable Phosphorus Concentrations from Soil.

PubMed

Norby, Jessica; Strawn, Daniel; Brooks, Erin

2018-03-01

To accurately assess P concentrations in soil extracts, standard laboratory practices for monitoring P concentrations are needed. Water-extractable P is a common analytical test to determine P availability for leaching from soils, and it is used to determine best management practices. Most P analytical tests require filtration through a filter membrane with 0.45-μm pore size to distinguish between particulate and dissolved P species. However, filter membrane type is rarely specified in method protocols, and many different types of membranes are available. In this study, three common filter membrane materials (polyether sulfone, nylon, and nitrocellulose), all with 0.45-μm pore sizes, were tested for analytical differences in total P concentrations and dissolved reactive P (DRP) concentrations in water extracts from six soils sampled from two regions. Three of the extracts from the six soil samples had different total P concentrations for all three membrane types. The other three soil extracts had significantly different total P results from at least one filter membrane type. Total P concentration differences were as great as 35%. The DRP concentrations in the extracts were dependent on filter type in five of the six soil types. Results from this research show that filter membrane type is an important parameter that affects concentrations of total P and DRP from soil extracts. Thus, membrane type should be specified in soil extraction protocols. Copyright © by the American Society of Agronomy, Crop Science Society of America, and Soil Science Society of America, Inc.

The influences of four types of soil on the growth, physiological and biochemical characteristics of Lycoris aurea (L’ Her.) Herb

PubMed Central

Quan, Miaohua; Liang, Juan

2017-01-01

Based on the characteristics of Lycoris aurea (L. aurea) natural distribution and local soil types, we selected four representative types of soil, including humus soil, sandy soil, garden soil and yellow-brown soil, for conducting the cultivation experiments to investigate key soil factors influencing its growth and development and to select the soil types suitable for cultivating it. We found that there existed significant differences in the contents of mineral elements and the activities of soil enzymes (urease, phosphatase, sucrase and catalase) etc. Among which, the contents of organic matters, alkali-hydrolysable nitrogen, Ca and Mg as well as the activities of soil enzymes in humus soil were the highest ones. In yellow-brown soil, except for Fe, the values of all the other items were the lowest ones. Net photosynthetic rate (Pn), biomass and lycorine content in humus soil were all the highest ones, which were increased by 31.02, 69.39 and 55.79%, respectively, as compared to those of yellow-brown soil. Stepwise multiple regression analysis and path analysis indicated that alkali-hydrolysable nitrogen, and Ca etc. were key soil factors influencing Pn, biomass and lycorine content of L. aurea. Thus, humus soil can be used as medium suitable for artificial cultivation of L. aurea. PMID:28240308

The influences of four types of soil on the growth, physiological and biochemical characteristics of Lycoris aurea (L' Her.) Herb.

PubMed

Quan, Miaohua; Liang, Juan

2017-02-27

Based on the characteristics of Lycoris aurea (L. aurea) natural distribution and local soil types, we selected four representative types of soil, including humus soil, sandy soil, garden soil and yellow-brown soil, for conducting the cultivation experiments to investigate key soil factors influencing its growth and development and to select the soil types suitable for cultivating it. We found that there existed significant differences in the contents of mineral elements and the activities of soil enzymes (urease, phosphatase, sucrase and catalase) etc. Among which, the contents of organic matters, alkali-hydrolysable nitrogen, Ca and Mg as well as the activities of soil enzymes in humus soil were the highest ones. In yellow-brown soil, except for Fe, the values of all the other items were the lowest ones. Net photosynthetic rate (P n ), biomass and lycorine content in humus soil were all the highest ones, which were increased by 31.02, 69.39 and 55.79%, respectively, as compared to those of yellow-brown soil. Stepwise multiple regression analysis and path analysis indicated that alkali-hydrolysable nitrogen, and Ca etc. were key soil factors influencing P n , biomass and lycorine content of L. aurea. Thus, humus soil can be used as medium suitable for artificial cultivation of L. aurea.

Dryland soil microbial communities display spatial biogeographic patterns associated with soil depth and soil parent material

USGS Publications Warehouse

Steven, Blaire; Gallegos-Graves, La Verne; Belnap, Jayne; Kuske, Cheryl R.

2013-01-01

Biological soil crusts (biocrusts) are common to drylands worldwide. We employed replicated, spatially nested sampling and 16S rRNA gene sequencing to describe the soil microbial communities in three soils derived from different parent material (sandstone, shale, and gypsum). For each soil type, two depths (biocrusts, 0–1 cm; below-crust soils, 2–5 cm) and two horizontal spatial scales (15 cm and 5 m) were sampled. In all three soils, Cyanobacteria and Proteobacteria demonstrated significantly higher relative abundance in the biocrusts, while Chloroflexi and Archaea were significantly enriched in the below-crust soils. Biomass and diversity of the communities in biocrusts or below-crust soils did not differ with soil type. However, biocrusts on gypsum soil harbored significantly larger populations of Actinobacteria and Proteobacteria and lower populations of Cyanobacteria. Numerically dominant operational taxonomic units (OTU; 97% sequence identity) in the biocrusts were conserved across the soil types, whereas two dominant OTUs in the below-crust sand and shale soils were not identified in the gypsum soil. The uniformity with which small-scale vertical community differences are maintained across larger horizontal spatial scales and soil types is a feature of dryland ecosystems that should be considered when designing management plans and determining the response of biocrusts to environmental disturbances.

Root development of winter wheat in erosion-affected soils depending on the position in a hummocky ground moraine soil landscape

NASA Astrophysics Data System (ADS)

Herbrich, Marcus; Gerke, Horst H.; Sommer, Michael

2017-04-01

The soil water uptake by crops is a key process in the hydrological cycle of agricultural ecosystems. In the arable hummocky ground moraines soil landscapes, an erosion-induced spatial differentiation of soil types has been established due to water and tillage erosion. Crop development may reflect soil landscape patterns and erosion-induced soil profile modifications, respectively, by increased or reduced plant and root growth. The objective was analyze field data of the root density and the root lengths of winter wheat for a non-eroded reference soil at the plateau (Albic Luvisol), an extremely eroded soil at steep midslope (Calcaric Regosol), and depositional soil at the footslope (Colluvic Regosol) using the minirhizotron technique. From 9/14 to 8/15 results indicate that root density values were highest for the Colluvic Regosol, followed by the Albic Luvisol and lowest for the Calcaric Regosol. In turn, the lowest maximum root penetration depth was found in the Colluvic Regosol because of the relatively high and fluctuating water table at this landscape position. The analyzed field root data revealed positive relations to above-ground plant parameters and corroborated the hypothesis that the crop root system was reflecting erosion-induced soil profile modifications. When accounting for the position-specific root development, the simulation of water and solute movement suggested differences in the balances as compared to assuming a spatially uniform development.

Mercury contamination in agricultural soils from abandoned metal mines classified by geology and mineralization.

PubMed

Kim, Han Sik; Jung, Myung Chae

2012-01-01

This survey aimed to compare mercury concentrations in soils related to geology and mineralization types of mines. A total of 16,386 surface soils (0~15 cm in depth) were taken from agricultural lands near 343 abandoned mines (within 2 km from each mine) and analyzed for Hg by AAS with a hydride-generation device. To meaningfully compare mercury levels in soils with geology and mineralization types, three subclassification criteria were adapted: (1) five mineralization types, (2) four valuable ore mineral types, and (3) four parent rock types. The average concentration of Hg in all soils was 0.204 mg kg(-1) with a range of 0.002-24.07 mg kg(-1). Based on the mineralization types, average Hg concentrations (mg kg(-1)) in the soils decreased in the order of pegmatite (0.250) > hydrothermal vein (0.208) > hydrothermal replacement (0.166) > skarn (0.121) > sedimentary deposits (0.045). In terms of the valuable ore mineral types, the concentrations decreased in the order of Au-Ag-base metal mines ≈ base metal mines > Au-Ag mines > Sn-W-Mo-Fe-Mn mines. For parent rock types, similar concentrations were found in the soils derived from sedimentary rocks and metamorphic rocks followed by heterogeneous rocks with igneous and metamorphic processes. Furthermore, farmland soils contained relatively higher Hg levels than paddy soils. Therefore, it can be concluded that soils in Au, Ag, and base metal mines derived from a hydrothermal vein type of metamorphic rocks and pegmatite deposits contained relatively higher concentrations of mercury in the surface environment.

Humus in some soils from Western Antarctica

NASA Astrophysics Data System (ADS)

Abakumov, E.

2009-04-01

Soils of Antarctica are well known as a thick profile soils with low amounts of humus concentrated in the upper layers - O or A horizons. Also there are specific soils of seashore landscapes which affected by penguins guano accumulation and, therefore characterized by high stocks of organic matter in solum. These two types of soils were studied during the Western Antarctica part of 53th Russian Antarctic Expedition in 2008 International Polar Year. These rote of expedition was on Polar stations "Russkaya", "Leningradskaya" and "Bellinsgausen" and also two places, not affected by polar men's - Lindsey Island and Hudson mountains (Ross Sea). Typical soils of "Russkaya" and "Leningradskaya" stations was a Cryosoils with low humus content (0,02 - 0,20 %) which was a product of lichens decaying and further humification. The humus profile was not deep and humic substances migration stopped on the 30 cm deeps maximally. Soils of Sub-Antarctica (Bellinsgausen station, King-George Island) show higher portions of humus which maximum was 3,00 % under the mosses. Humus distribution was more gradual through profile due to the higher thickness of active layer and longer period of biological activity. Soils under the penguin's beaches shows big portions of organic matter, in some cases more than 50 % to total soil mass. Humification starts in first years in cases of Sub-Antarctic guano soils and only after 3-7 years of leaching in seashore Antarctic guano-soils. Soils under the guano layers were extremely reached by nitrogen, and in some cases there were not any plants there due to toxicity of guano. This event was more typical for cold seashore soils of Antarctica. In all cases humus consists mostly of fulvic acids and low molecular non-specific organic acids. The CHA/CFA ratio in all cases were lesser than 1,0 and in more that 50 % of cases it was lesser than 0,5. The investigations conducted shows that the stocks of humus in soil of Antarctica are not estimated and till now we didn't know the total stocks of organic matter in automorphous dry plains and valleys and seashore landscapes of this continent.

Soil Biogeochemistry in the Ent DGVM

NASA Astrophysics Data System (ADS)

Kharecha, P. A.; Kiang, N. Y.; Aleinov, I.; Moorcroft, P.; Koster, R.

2007-12-01

As the global climate continues to warm in the 21st century, it will be vital to assess the degree of carbon cycle feedbacks from the terrestrial biosphere, particularly the soil. Global soil carbon stocks, which amount to approximately double the carbon stored in vegetation, could provide either positive or negative climate feedbacks, depending on a given ecosystem's response to warming. To predict changes in net terrestrial CO2 fluxes and belowground organic carbon storage, we have developed and evaluated a soil biogeochemistry submodel for the Ent dynamic global vegetation model currently being tested within the GISS GCM. It is a modified version of the soil submodel in the CASA biosphere model (Potter et al., Glob. Biogeoch. Cyc. 7, 1993). We have enhanced it to allow for explicit depth structure (2 soil layers, 0-30 cm and 30-100 cm), first-order inter-layer (vertical) soil organic carbon transport, and a variable-Q10 temperature dependence for soil microbial respiration. We have tested the soil model in numerous offline runs. To spin up the simulated carbon pools offline, we conducted multi-century runs using meteorological and ecological data from various FLUXNET field sites that represent 7 of the 8 GISS GCM plant functional types: tundra, grassland, shrubland, savanna, deciduous forest, evergreen needleleaf forest, and tropical rainforest (the eighth, cropland, will be dealt with in a separate study). We then compare the magnitudes of the simulated spun-up soil pools to soil carbon stock data from these field sites as well as the biome-aggregated data from Post et al. (Nature 317, 1985). Net ecosystem CO2 fluxes and soil respiration are also compared to site-specific measurements where available. Preliminary results suggest that simulated fluxes are reasonably close to measured values, but simulated carbon storage tends to be lower than the measurements. In addition to site-specific comparisons, we discuss the broader implications of our results, e.g., the effects of including explicit depth structure and inter-layer soil carbon transport on simulated soil respiration, carbon storage, and estimation of the global carbon budget.

Distribution of Natural (U-238, Th-232, Ra-226) and Technogenic (Sr-90, Cs-137) Radionuclides in Soil-Plants Complex Near Issyk-Kul Lake, Kyrgyzstan

NASA Astrophysics Data System (ADS)

Jovanovic, L.; Kaldybaev, B.; Djenbaev, B.; Tilenbaev, A.

2012-04-01

Researches on radionuclides distribution in the soil-plants complex provide essential information in understanding human exposure to natural and technogenic sources of radiation. It is necessary in establishing regulation relating to radiation protection. The aim of this study was the radiochemical analysis of the content natural radionuclides 238U, 232Th,226Ra and technogenic radionuclides content (90Sr, 137Cs) in soils near Issyk-Kul lake (Kyrgyzstan). Results of radiochemical analyses have shown, that the concentrations of thorium-232 are fluctuating in the limits (11.7-84.1)-10-4% in the soils. The greatest concentration of thorium-232 has been found in the light chestnut soils. The content of uranium-238 in the soils near Issyk-Kul lake is fluctuating from 2.8 up to 12.7-10-4%. Radium-226 has more migration ability in comparison with other heavy natural radionuclides. According to our research the concentrations of radium-226 are fluctuating in the limits (9.4-43.0)-10-11%. The greatest concentration of radium-226 (43,0±2,8)-10-11% has been determined in the light chestnut soil. In connection with global migration of contaminating substances, including radioactive, the special attention is given long-lived radionuclides strontium-90 and caesium-137 in food-chains, and agroecosystems. Results of radiochemical analyses have shown, that specific activity of strontium-90 is fluctuating in the range of 2.9 up to 11.1 Bq/kg, and caesium-137 from 3.7 up to 14,3 Bq/kg in the soil of agroecosystems in the region of Issyk-Kul. In soil samples down to 1 meter we have observed vertical migration of these radionuclides, they were found to accumulate on the surface of soil horizon (0-5 cm) and their specific activity sharply decreases with depth. In addition in high-mountain pastures characterized by horizontal migration of cattle in profiles of soil, it was discovered that specific activity of radionuclides are lower on the slope than at the foot of the mountain. The content of natural radionuclides (238U, 232Th, 226Ra ) and technogenic radionuclides (90Sr, 137Cs) in the soils depend on many factors: the type and mechanical composition of soil, capacity of absorption, acidity, concentration of exchange forms of carbonates, organic substances. The radionuclides accumulation process in the plants depend on a specific accumulation ability of plants. During the researches it has been found that radionuclides accumulate in vegetative organs more than in reproductive parts of plants. According to the accumulation degrees of natural radionuclides plants taking place in the following decreasing series: sugar beet > potatoes > lucerne > clover > oats > perennial herbs > wheat > annual grass crops > barley > corn. Radiochemical analysis of the technogenic radionuclides in the plants has been determined that specific activity of strontium-90 is increased in leguminous plants (cobs of corn, lucerne) in comparison with other cultures. Caesium-137 is accumulated in beet roots, cobs of corn and lucerne. Key words: natural radionuclides, technogenic radionuclides, soil-plants complex, Issyk-Kul lake, Kyrgyzstan

Composting and compost utilization: accounting of greenhouse gases and global warming contributions.

PubMed

Boldrin, Alessio; Andersen, Jacob K; Møller, Jacob; Christensen, Thomas H; Favoino, Enzo

2009-11-01

Greenhouse gas (GHG) emissions related to composting of organic waste and the use of compost were assessed from a waste management perspective. The GHG accounting for composting includes use of electricity and fuels, emissions of methane and nitrous oxide from the composting process, and savings obtained by the use of the compost. The GHG account depends on waste type and composition (kitchen organics, garden waste), technology type (open systems, closed systems, home composting), the efficiency of off-gas cleaning at enclosed composting systems, and the use of the compost. The latter is an important issue and is related to the long-term binding of carbon in the soil, to related effects in terms of soil improvement and to what the compost substitutes; this could be fertilizer and peat for soil improvement or for growth media production. The overall global warming factor (GWF) for composting therefore varies between significant savings (-900 kg CO(2)-equivalents tonne(-1) wet waste (ww)) and a net load (300 kg CO(2)-equivalents tonne( -1) ww). The major savings are obtained by use of compost as a substitute for peat in the production of growth media. However, it may be difficult for a specific composting plant to document how the compost is used and what it actually substitutes for. Two cases representing various technologies were assessed showing how GHG accounting can be done when specific information and data are available.

Impact of Rotylenchulus reniformis on Cotton Yield as Affected by Soil Texture and Irrigation

PubMed Central

Herring, Stephanie L.; Heitman, Joshua L.

2010-01-01

The effects of soil type, irrigation, and population density of Rotylenchulus reniformis on cotton were evaluated in a two-year microplot experiment. Six soil types, Fuquay sand, Norfolk sandy loam, Portsmouth loamy sand, Muck, Cecil sandy loam, and Cecil sandy clay, were arranged in randomized complete blocks with five replications. Each block had numerous plots previously inoculated with R. reniformis and two or more noninoculated microplots per soil type, one half of which were irrigated in each replicate for a total of 240 plots. Greatest cotton lint yields were achieved in the Muck, Norfolk sandy loam, and Portsmouth loamy sand soils. Cotton yield in the Portsmouth loamy sand did not differ from the Muck soil which averaged the greatest lint yield per plot of all soil types. Cotton yield was negatively related to R. reniformis PI (initial population density) in all soil types except for the Cecil sandy clay which had the highest clay content. Supplemental irrigation increased yields in the higher yielding Muck, Norfolk sandy loam, and Portsmouth loamy sand soils compared to the lower yielding Cecil sandy clay, Cecil sandy loam, and Fuquay sand soils. The Portsmouth sandy loam was among the highest yielding soils, and also supported the greatest R. reniformis population density. Cotton lint yield was affected more by R. reniformis Pi with irrigation in the Portsmouth loamy sand soil with a greater influence of Pi on lint yield in irrigated plots than other soils. A significant first degree PI × irrigation interaction for this soil type confirms this observation. PMID:22736865

Impact of Rotylenchulus reniformis on Cotton Yield as Affected by Soil Texture and Irrigation.

PubMed

Herring, Stephanie L; Koenning, Stephen R; Heitman, Joshua L

2010-12-01

The effects of soil type, irrigation, and population density of Rotylenchulus reniformis on cotton were evaluated in a two-year microplot experiment. Six soil types, Fuquay sand, Norfolk sandy loam, Portsmouth loamy sand, Muck, Cecil sandy loam, and Cecil sandy clay, were arranged in randomized complete blocks with five replications. Each block had numerous plots previously inoculated with R. reniformis and two or more noninoculated microplots per soil type, one half of which were irrigated in each replicate for a total of 240 plots. Greatest cotton lint yields were achieved in the Muck, Norfolk sandy loam, and Portsmouth loamy sand soils. Cotton yield in the Portsmouth loamy sand did not differ from the Muck soil which averaged the greatest lint yield per plot of all soil types. Cotton yield was negatively related to R. reniformis PI (initial population density) in all soil types except for the Cecil sandy clay which had the highest clay content. Supplemental irrigation increased yields in the higher yielding Muck, Norfolk sandy loam, and Portsmouth loamy sand soils compared to the lower yielding Cecil sandy clay, Cecil sandy loam, and Fuquay sand soils. The Portsmouth sandy loam was among the highest yielding soils, and also supported the greatest R. reniformis population density. Cotton lint yield was affected more by R. reniformis Pi with irrigation in the Portsmouth loamy sand soil with a greater influence of Pi on lint yield in irrigated plots than other soils. A significant first degree PI × irrigation interaction for this soil type confirms this observation.

Assessment of acute toxicity tests and rhizotron experiments to characterize lethal and sublethal control of soil-based pests.

PubMed

Agatz, Annika; Schumann, Mario M; French, Bryan W; Brown, Colin D; Vidal, Stefan

2018-03-24

Characterizing lethal and sublethal control of soil-based pests with plant protection products is particularly challenging due to the complex and dynamic interplay of the system components. Here, we present two types of studies: acute toxcity experiments (homogenous exposure of individuals in soil) and rhizotron experiments (heterogeneous exposure of individuals in soil) to investigate their ability to strengthen our understanding of mechanisms driving the effectivness of the plant protection product. Experiments were conducted using larvae of the western corn rootworm Diabrotica virgifera LeConte and three pesticide active ingredients: clothianidin (neonicotinoid), chlorpyrifos (organophosphate) and tefluthrin (pyrethroid). The order of compound concentrations needed to invoke a specific effect intensity (EC 50 values) within the acute toxicity tests was chlorpyrifos > tefluthrin > clothianidin. This order changed for the rhizotron experiments because application type, fate and transport of the compounds in the soil profile, and sublethal effects on larvae also influence their effectiveness in controlling larval feeding on corn roots. Beyond the pure measurement of efficacy through observing relative changes in plant injury to control plants, the tests generate mechanistic understanding for drivers of efficacy apart from acute toxicity. The experiments have the potential to enhance efficacy testing and product development, and might be useful tools for assessing resistance development in the future. © 2018 Society of Chemical Industry. © 2018 Society of Chemical Industry.

Land-use types and soil chemical properties influence soil microbial communities in the semiarid Loess Plateau region in China

PubMed Central

Tian, Qin; Taniguchi, Takeshi; Shi, Wei-Yu; Li, Guoqing; Yamanaka, Norikazu; Du, Sheng

2017-01-01

Similar land-use types usually have similar soil properties, and, most likely, similar microbial communities. Here, we assessed whether land-use types or soil chemical properties are the primary drivers of soil microbial community composition, and how changes in one part of the ecosystem affect another. We applied Ion Torrent sequencing to the bacterial and fungal communities of five different land-use (vegetation) types in the Loess Plateau of China. We found that the overall trend of soil quality was natural forest > plantation > bare land. Dominant bacterial phyla consisted of Proteobacteria (42.35%), Actinobacteria (15.61%), Acidobacteria (13.32%), Bacteroidetes (8.43%), and Gemmatimonadetes (6.0%). The dominant fungi phyla were Ascomycota (40.39%), Basidiomycota (38.01%), and Zygomycota (16.86%). The results of Canonical Correspondence Analysis (CCA) and Redundancy Analysis (RDA) based on land-use types displayed groups according to the land-use types. Furthermore, the bacterial communities were mainly organized by soil organic carbon (SOC). The fungal communities were mainly related to available phosphorus (P). The results suggested that the changes of land use type generated changes in soil chemical properties, controlling the composition of microbial community in the semiarid Loess Plateau region. The microbial community could be an indicator for soil quality with respect to ecological restoration. PMID:28349918

Land-use types and soil chemical properties influence soil microbial communities in the semiarid Loess Plateau region in China

NASA Astrophysics Data System (ADS)

Tian, Qin; Taniguchi, Takeshi; Shi, Wei-Yu; Li, Guoqing; Yamanaka, Norikazu; Du, Sheng

2017-03-01

Similar land-use types usually have similar soil properties, and, most likely, similar microbial communities. Here, we assessed whether land-use types or soil chemical properties are the primary drivers of soil microbial community composition, and how changes in one part of the ecosystem affect another. We applied Ion Torrent sequencing to the bacterial and fungal communities of five different land-use (vegetation) types in the Loess Plateau of China. We found that the overall trend of soil quality was natural forest > plantation > bare land. Dominant bacterial phyla consisted of Proteobacteria (42.35%), Actinobacteria (15.61%), Acidobacteria (13.32%), Bacteroidetes (8.43%), and Gemmatimonadetes (6.0%). The dominant fungi phyla were Ascomycota (40.39%), Basidiomycota (38.01%), and Zygomycota (16.86%). The results of Canonical Correspondence Analysis (CCA) and Redundancy Analysis (RDA) based on land-use types displayed groups according to the land-use types. Furthermore, the bacterial communities were mainly organized by soil organic carbon (SOC). The fungal communities were mainly related to available phosphorus (P). The results suggested that the changes of land use type generated changes in soil chemical properties, controlling the composition of microbial community in the semiarid Loess Plateau region. The microbial community could be an indicator for soil quality with respect to ecological restoration.

Effect of mixing geopolymer and peat on bearing capacity in Ogan Komering Ilir (OKI) by California bearing ratio (CBR) test

NASA Astrophysics Data System (ADS)

Raharja, Danang S.; Hadiwardoyo, Sigit P.; Rahayu, Wiwik; Zain, Nasuhi

2017-06-01

Geopolymer is binder material that consists of solid material and the activator solution. Geopolymer material has successfully replaced cement in the manufacture of concrete with aluminosilicate bonding system. Geopolymer concrete has properties similar to cement concrete with high compressive strength, low shrinkage value, relatively low creep value, as well as acid-resistant. Based on these, the addition of polymers in peat soils is expected to improve the bearing capacity of peat soils. A study on the influence of geopolymer addition in peat soils was done by comparing before and after the peat soil was mixed with geopolymer using CBR (California Bearing Ratio) test in unsoaked and soaked conditions. 10% mixture content of the peat dry was used, weighted with a variety of curing time 4 hours, 5 days, and 10 days. There were two methods of mixing: first, peat was mixed with fly ash geopolymer activators and mixed solution (waterglass, NaOH, water), and second, peat was mixed with fly ash and mixed geopolymer (waterglass, NaOH, water, fly ash). Changes were observed in specific gravity, dry density, acidity (pH), and the microscopic structure with Scanning Electron Microscope (SEM). Curing time did not significantly affect the CBR value. It even shows a tendency to decline with longer curing time. The first type mixture obtained CBR value of: 5.4% for 4 hours curing, 4.6% for 5 days curing and 3.6% for 10 days curing. The second type mixture obtained CBR value of: 6.1% for 4 hours curing, 5.2% for 5 days curing and 5.2% for 10 days curing. Furthermore, the specific gravity value, dry density, pH near neutral and swelling percentage increased. From both variants, the second type mixture shows better results than the first type mixture. The results of SEM (Scanning Electron Microscopy) show the structure of the peat which became denser with the fly ash particles filling the peat microporous. Also, the reaction of fly ash with geopolymer is indicated by the solid agglomerates that are larger than normal fly ash particle size.

Wood bioenergy and soil productivity research

Treesearch

D. Andrew Scott; Deborah S. Page-Dumroese

2016-01-01

Timber harvesting can cause both short- and long-term changes in forest ecosystem functions, and scientists from USDA Forest Service (USDA FS) have been studying these processes for many years. Biomass and bioenergy markets alter the amount, type, and frequency at which material is harvested, which in turn has similar yet specific impacts on sustainable productivity....

Grazing effects on ecosystem CO2 fluxes differ among temperate steppe types in Eurasia.

PubMed

Hou, Longyu; Liu, Yan; Du, Jiancai; Wang, Mingya; Wang, Hui; Mao, Peisheng

2016-07-01

Grassland ecosystems play a critical role in regulating CO2 fluxes into and out of the Earth's surface. Whereas previous studies have often addressed single fluxes of CO2 separately, few have addressed the relation among and controls of multiple CO2 sub-fluxes simultaneously. In this study, we examined the relation among and controls of individual CO2 fluxes (i.e., GEP, NEP, SR, ER, CR) in three contrasting temperate steppes of north China, as affected by livestock grazing. Our findings show that climatic controls of the seasonal patterns in CO2 fluxes were both individual flux- and steppe type-specific, with significant grazing impacts observed for canopy respiration only. In contrast, climatic controls of the annual patterns were only individual flux-specific, with minor grazing impacts on the individual fluxes. Grazing significantly reduced the mean annual soil respiration rate in the typical and desert steppes, but significantly enhanced both soil and canopy respiration in the meadow steppe. Our study suggests that a reassessment of the role of livestock grazing in regulating GHG exchanges is imperative in future studies.

Spatial and temporal anomalies of soil gas in northern Taiwan and its tectonic and seismic implications

NASA Astrophysics Data System (ADS)

Fu, Ching-Chou; Yang, Tsanyao Frank; Chen, Cheng-Hong; Lee, Lou-Chuang; Wu, Yih-Min; Liu, Tsung-Kwei; Walia, Vivek; Kumar, Arvind; Lai, Tzu-Hua

2017-11-01

In this paper, we study (1) the spatial anomalies and (2) the temporal anomalies of soil gas in northern Taiwan. The spatial anomalies of soil gas are related to tectonic faults, while the temporal anomalies of soil gas are associated with pre-earthquake activities. Detailed soil gas sampling was systematically performed, and the analysis of the collected gas species shows that high helium and nitrogen concentrations appear in samples from specific sites, which coincide with the structural setting of the area studied. This analysis indicates the possibility of using these soil gases to determine fault zones in the studied area. Based on the soil gas data, a station (Tapingti) for automatic soil gas monitoring was constructed on an appropriate site at the fault zone. Some anomalous high radon concentrations at certain times can be identified from the dataset, which was generated by the continuous monitoring of soil gas for over a year. Notably, many of these anomalies were observed several hours to a few days before the earthquakes (ML > 3) that occurred in northern Taiwan. By combining the information of epicenters and fault plane solutions of these earthquakes, we find that the shallow earthquakes (<15 km) were mainly strike-slip and normal-type earthquakes, and concentrated within a distance of 30 km to the monitoring site (Group A). The deep earthquakes (>20 km) were mainly thrust-type earthquakes and distributed in greater distances (>45 km) east of the monitoring site (Group B). Such focal mechanisms of earthquakes suggest an extensional and compressional structural domain in the continental crust for Group A and Group B earthquakes, respectively. It is suggested that the pre-earthquake activities associated with the seismicity of Group B may be transmitted along the major decollement in the region below the Tapingti station, leading to the observed soil gas enhancements.

Effects of soil type on leaching and runoff transport of rare earth elements and phosphorous in laboratory experiments.

PubMed

Wang, Lingqing; Liang, Tao; Chong, Zhongyi; Zhang, Chaosheng

2011-01-01

Through leaching experiments and simulated rainfall experiments, characteristics of vertical leaching of exogenous rare earth elements (REEs) and phosphorus (P) and their losses with surface runoff during simulated rainfall in different types of soils (terra nera soil, cinnamon soil, red soil, loess soil, and purple soil) were investigated. Results of the leaching experiments showed that vertical transports of REEs and P were relatively low, with transport depths less than 6 cm. The vertical leaching rates of REEs and P in the different soils followed the order of purple soil > terra nera soil > red soil > cinnamon soil > loess soil. Results of the simulated rainfall experiments (83 mm h⁻¹) revealed that more than 92% of REEs and P transported with soil particles in runoff. The loss rates of REEs and P in surface runoff in the different soil types were in the order of loess soil > terra nera soil > cinnamon soil > red soil > purple soil. The total amounts of losses of REEs and P in runoff were significantly correlated.

Soil organic carbon sequestration potential and gap of the sub-tropical region

NASA Astrophysics Data System (ADS)

Chiti, T.; Santini, M.; Valentini, R.

2012-04-01

A database of soil organic carbon (SOC) stocks was created for the sub-tropical belt using existing global SOC databases (WISE3; various SOTER) and new data from an ongoing project (ERC Africa-GHG) specific for the tropical forests of the African continent. The intent of this database is to evaluate the sequestration potential of a critical area of the world where most of the primary rainforests are located, and actually show undoubtedly high SOC losses associated with deforestation. About 4100 profiles, quite well distributed over the entire sub-tropical belt, were used to calculate the actual SOC stock for the 0-30 cm and 30-100 cm depths of mineral soil. First, this actual SOC stock has been related to the current Land Use Systems; successively, it has been interpolated taking into account Homogeneous Land Units (HLUs) in terms of soil type, climate zone and land use. Then, relying on consistent projections, of both climate and land use changes, for the years 2050 and 2100 under extremes IPCC-SRES emission scenarios such as the B1 and the A2, potential SOC stocks for these time frames has been calculated. Soil carbon sequestration gap is calculated by the difference of the actual SOC stock and the future projections. When subtracting potential from the actual SOC stocks, negative values represent a gap in terms of possible SOC losses and so reduced carbon sequestration. The soil carbon gap indicates locations where there will be low soil-carbon levels associated with medium-to-high actual SOC stocks, and medium soil-carbon levels associated with high actual SOC stocks, depending on soil type, climate and land use conditions. On the long term, 2076-2100, a SOC gap is observed under all scenarios in South America, just below the Amazonia basin, where are located open and fragmented forests. However, in the Amazonia basin deforestation decrease since no sensible SOC losses were observed. An important gap is observed also in the Congo basin and West Africa, but the gap is more fragmented in small spots than that observed in South America. Forests of Asia seems to be less interested from SOC losses and the projections show almost no gaps under both scenarios. The soil organic carbon sequestration potential database is intended to provide an indication at the regional level of the potential for policy makers to provide environmental services and drive specific policy to increase sustainable land management.

[Soil infiltration characteristics under main vegetation types in Anji County of Zhejiang Province].

PubMed

Liu, Dao-Ping; Chen, San-Xiong; Zhang, Jin-Chi; Xie, Li; Jiang, Jiang

2007-03-01

The study on the soil infiltration under different main vegetation types in Anji County of Zhejiang Province showed that the characteristics of soil infiltration differed significantly with land use type, and the test eight vegetation types could be classified into four groups, based on soil infiltration capability. The first group, deciduous broadleaved forest, had the strongest soil infiltration capability, and the second group with a stronger soil infiltration capability was composed of grass, pine forest, shrub community and tea bush. Bamboo and evergreen broadleaved forest were classified into the third group with a relatively strong soil infiltration capability, while bare land belonged to the fourth group because of the bad soil structure and poorest soil infiltration capability. The comprehensive parameters of soil infiltration (alpha) and root (beta) were obtained by principal component analysis, and the regression model of alpha and beta could be described as alpha = 0. 1708ebeta -0. 3122. Soil infiltration capability was greatly affected by soil physical and chemical characteristics and root system. Fine roots (< or = 1 mm in diameter) played effective roles on the improvement of soil physical and chemical properties, and the increase of soil infiltration capability was closely related to the amount of the fine roots.

Transcriptomic dissection of Bradyrhizobium sp. strain ORS285 in symbiosis with Aeschynomene spp. inducing different bacteroid morphotypes with contrasted symbiotic efficiency.

PubMed

Lamouche, Florian; Gully, Djamel; Chaumeret, Anaïs; Nouwen, Nico; Verly, Camille; Pierre, Olivier; Sciallano, Coline; Fardoux, Joël; Jeudy, Christian; Szücs, Attila; Mondy, Samuel; Salon, Christophe; Nagy, István; Kereszt, Attila; Dessaux, Yves; Giraud, Eric; Mergaert, Peter; Alunni, Benoit

2018-06-19

To circumvent the paucity of nitrogen sources in the soil legume plants establish a symbiotic interaction with nitrogen-fixing soil bacteria called rhizobia. During symbiosis, the plants form root organs called nodules, where bacteria are housed intracellularly and become active nitrogen fixers known as bacteroids. Depending on their host plant, bacteroids can adopt different morphotypes, being either unmodified (U), elongated (E) or spherical (S). E- and S-type bacteroids undergo a terminal differentiation leading to irreversible morphological changes and DNA endoreduplication. Previous studies suggest that differentiated bacteroids display an increased symbiotic efficiency (E>U and S>U). In this study, we used a combination of Aeschynomene species inducing E- or S-type bacteroids in symbiosis with Bradyrhizobium sp. ORS285 to show that S-type bacteroids present a better symbiotic efficiency than E-type bacteroids. We performed a transcriptomic analysis on E- and S-type bacteroids formed by Aeschynomene afraspera and Aeschynomene indica nodules and identified the bacterial functions activated in bacteroids and specific to each bacteroid type. Extending the expression analysis in E- and S-type bacteroids in other Aeschynomene species by qRT-PCR on selected genes from the transcriptome analysis narrowed down the set of bacteroid morphotype-specific genes. Functional analysis of a selected subset of 31 bacteroid-induced or morphotype-specific genes revealed no symbiotic phenotypes in the mutants. This highlights the robustness of the symbiotic program but could also indicate that the bacterial response to the plant environment is partially anticipatory or even maladaptive. Our analysis confirms the correlation between differentiation and efficiency of the bacteroids and provides a framework for the identification of bacterial functions that affect the efficiency of bacteroids. This article is protected by copyright. All rights reserved. © 2018 Society for Applied Microbiology and John Wiley & Sons Ltd.

Effect of soil metal contamination on glyphosate mineralization: role of zinc in the mineralization rates of two copper-spiked mineral soils.

PubMed

Kim, Bojeong; Kim, Young Sik; Kim, Bo Min; Hay, Anthony G; McBride, Murray B

2011-03-01

A systematic investigation into lowered degradation rates of glyphosate in metal-contaminated soils was performed by measuring mineralization of [(14)C]glyphosate to (14)CO(2) in two mineral soils that had been spiked with Cu and/or Zn at various loadings. Cumulative (14)CO(2) release was estimated to be approximately 6% or less of the amount of [(14)C]glyphosate originally added in both soils over an 80-d incubation. For all but the highest Cu treatments (400 mg kg(-1)) in the coarse-textured Arkport soil, mineralization began without a lag phase and declined over time. No inhibition of mineralization was observed for Zn up to 400 mg kg(-1) in either soil, suggesting differential sensitivity of glyphosate mineralization to the types of metal and soil. Interestingly, Zn appeared to alleviate high-Cu inhibition of mineralization in the Arkport soil. The protective role of Zn against Cu toxicity was also observed in the pure culture study with Pseudomonas aeruginosa, suggesting that increased mineralization rates in high Cu soil with Zn additions might have been due to alleviation of cellular toxicity by Zn rather than a mineralization specific mechanism. Extensive use of glyphosate combined with its reduced degradation in Cu-contaminated, coarse-textured soils may increase glyphosate persistence in soil and consequently facilitate Cu and glyphosate mobilization in the soil environment. Copyright © 2010 SETAC.

Lithologic Control on the Form of Soil Mantled Hillslopes

NASA Astrophysics Data System (ADS)

Johnstone, S. A.; Hilley, G. E.

2014-12-01

Slopes on steady-state soil-mantled hillslopes tend to increase downslope in a way that balances local transport capacity with the sediment supplied from progressively larger source areas. Most predictions for the transport of soil depend purely on topographic slope and constants. Thus, soil mantled topography should evolve toward smooth forms in which soils act to buffer these forms from the underlying geologic structure. However, in the Gabilan Mesa, CA, oscillations in the slope of soil-mantled hillslopes mirror oscillations in the underlying stratigraphy. Using field measurements of stratigraphy and soil depths, topographic analysis, and numerical modeling, we demonstrate that variations in rock type can impact the form of soil-mantled hillslopes. Specifically, variations in the properties of underlying rocks may yield different soil thicknesses. Balancing transport rates across these variations in thickness requires slopes to change when soil transport depends on both soil thickness and slope. A compilation of published data on the variation in activity with depth of various transport processes provides the basis for a geomorphic transport law (GTL) that generalizes the depth dependence of various transport processes. While this GTL is explicitly depth dependent, it is also capable of describing situations in which hillslope transport is relatively insensitive to variations in thickness and therefore essentially equivalent to existing formulations. We use dimensional analysis and numerical modeling to demonstrate the conditions under which transport on soil mantled slopes, and consequently topographic forms, may be sensitive to variations in soil thickness and therefore lithology.

Influence of Soil Type and Drainage on Growth of Swamp Chestnut Oak (Quercus Michauxii Nutt.) Seedlings

Treesearch

Donald D. Hook

1969-01-01

Swamp chestnut oak (Quercus michauxii Nutt.) seedlings were grown for 2 years in five soil types in drained and undrained pots. First-year height growth was related to soil type and pot drainage, but second-year height growth was related only to soil type. Results suggest that swamp chestnut oak is site-sensitive. But slow growth, a maximum of 2...

Forestry Tire Tractive Performance: New, Worn, and with Chains

Treesearch

C.R. Vechinski; C.R. Johnson; R.L. Raper; T.P. McDonald

1999-01-01

The tractive perfomance of a new tire, a worn tire, and a worn tire with forestry tire chains was measured in four soil types. Two of the soil types simulated forest-floor conditions with one soil type having a sulfate cover of pine straw and the other having a surface cover of sod. The two remaining soil types were bare. The worn tire with and without chains had...

Isolation and Identification of Microorganisms in JSC Mars-1 Simulant Soil

NASA Technical Reports Server (NTRS)

Mendez, Claudia; Garza, Elizabeth; Gulati, Poonam; Morris, Penny A.; Allen, Carlton C.

2005-01-01

Microorganisms were isolated and identified in samples of JSC Mars-1, a Mars simulant soil. JSC Mars-1 is an altered volcanic ash from a cinder cone south of Mauna Kea, Hawaii. This material was chosen because of its similarity to the Martian soil in physical and chemical composition. The soil was obtained by excavating 40 cm deep in a vegetated area to prevent contamination. In previous studies, bacteria from this soil has been isolated by culturing on different types of media, including minimal media, and using biochemical techniques for identification. Isolation by culturing is successful only for a small percentage of the population. As a result, molecular techniques are being employed to identify microorganisms directly from the soil without culturing. In this study, bacteria were identified by purifying and sequencing the DNA encoding the 16s ribosomal RNA (16s rDNA). This gene is well conserved in species and demonstrates species specificity. In addition, biofilm formation, an indicator of microbial life, was studied with this soil. Biofilms are microbial communities consisting of microbes and exopolysaccharides secreted by them. This is a protective way of life for the microbes as they are more resistant to environmental pressures.

Molecular-Level Study of the Effect of Prior Axial Compression/Torsion on the Axial-Tensile Strength of PPTA Fibers

DTIC Science & Technology

2013-07-16

Twaron, etc., which are characterized by high specific strength and high specific stiffness. Fibers of this type are often referred to as ‘‘ballistic... high level of penetration resistance against large kinetic energy projectiles, such as bullets, detonated-mine-induced soil ejecta, improvised...increasingly being designed and developed through an extensive use of computer-aided engineering ( CAE ) methods and tools. The utility of these

Effects of soil spatial variability at the hillslope and catchment scales on characteristics of rainfall-induced landslides

NASA Astrophysics Data System (ADS)

Fan, Linfeng; Lehmann, Peter; Or, Dani

2016-03-01

Spatial variations in soil properties affect key hydrological processes, yet their role in soil mechanical response to hydro-mechanical loading is rarely considered. This study aims to fill this gap by systematically quantifying effects of spatial variations in soil type and initial water content on rapid rainfall-induced shallow landslide predictions at the hillslope- and catchment-scales. We employed a physically-based landslide triggering model that considers mechanical interactions among soil columns governed by strength thresholds. At the hillslope scale, we found that the emergence of weak regions induced by spatial variations of soil type and initial water content resulted in early triggering of landslides with smaller volumes of released mass relative to a homogeneous slope. At the catchment scale, initial water content was linked to a topographic wetness index, whereas soil type varied deterministically with soil depth considering spatially correlated stochastic components. Results indicate that a strong spatial organization of initial water content delays landslide triggering, whereas spatially linked soil type with soil depth promoted landslide initiation. Increasing the standard deviation and correlation length of the stochastic component of soil type increases landslide volume and hastens onset of landslides. The study illustrates that for similar external boundary conditions and mean soil properties, landslide characteristics vary significantly with soil variability, hence it must be considered for improved landslide model predictions.

Using LUCAS topsoil database to estimate soil organic carbon content in local spectral libraries

NASA Astrophysics Data System (ADS)

Castaldi, Fabio; van Wesemael, Bas; Chabrillat, Sabine; Chartin, Caroline

2017-04-01

The quantification of the soil organic carbon (SOC) content over large areas is mandatory to obtain accurate soil characterization and classification, which can improve site specific management at local or regional scale exploiting the strong relationship between SOC and crop growth. The estimation of the SOC is not only important for agricultural purposes: in recent years, the increasing attention towards global warming highlighted the crucial role of the soil in the global carbon cycle. In this context, soil spectroscopy is a well consolidated and widespread method to estimate soil variables exploiting the interaction between chromophores and electromagnetic radiation. The importance of spectroscopy in soil science is reflected by the increasing number of large soil spectral libraries collected in the world. These large libraries contain soil samples derived from a consistent number of pedological regions and thus from different parent material and soil types; this heterogeneity entails, in turn, a large variability in terms of mineralogical and organic composition. In the light of the huge variability of the spectral responses to SOC content and composition, a rigorous classification process is necessary to subset large spectral libraries and to avoid the calibration of global models failing to predict local variation in SOC content. In this regard, this study proposes a method to subset the European LUCAS topsoil database into soil classes using a clustering analysis based on a large number of soil properties. The LUCAS database was chosen to apply a standardized multivariate calibration approach valid for large areas without the need for extensive field and laboratory work for calibration of local models. Seven soil classes were detected by the clustering analyses and the samples belonging to each class were used to calibrate specific partial least square regression (PLSR) models to estimate SOC content of three local libraries collected in Belgium (Loam belt and Wallonia) and Luxembourg. The three local libraries only consist of spectral data (199 samples) acquired using the same protocol as the one used for the LUCAS database. SOC was estimated with a good accuracy both within each local library (RMSE: 1.2 ÷ 5.4 g kg-1; RPD: 1.41 ÷ 2.06) and for the samples of the three libraries together (RMSE: 3.9 g kg-1; RPD: 2.47). The proposed approach could allow to estimate SOC everywhere in Europe only collecting spectra, without the need for chemical laboratory analyses, exploiting the potentiality of the LUCAS database and specific PLSR models.

Modeling diffusion and reaction in soils: 9. The Buckingham-Burdine-Campbell equation for gas diffusivity in undisturbed soil

DOE Office of Scientific and Technical Information (OSTI.GOV)

Moldrup, P.; Olesen, T.; Yamaguchi, T.

1999-08-01

Accurate description of gas diffusivity (ratio of gas diffusion coefficients in soil and free air, D{sub s}/D{sub 0}) in undisturbed soils is a prerequisite for predicting in situ transport and fate of volatile organic chemicals and greenhouse gases. Reference point gas diffusivities (R{sub p}) in completely dry soil were estimated for 20 undisturbed soils by assuming a power function relation between gas diffusivity and air-filled porosity ({epsilon}). Among the classical gas diffusivity models, the Buckingham (1904) expression, equal to the soil total porosity squared, best described R{sub p}. Inasmuch, as their previous works implied a soil-type dependency of D{sub s}/D{submore » 0}({epsilon}) in undisturbed soils, the Buckingham R{sub p} expression was inserted in two soil-type-dependent D{sub s}/D{sub 0}({epsilon}) models. One D{sub s}/D{sub 0}({epsilon}) model is a function of pore-size distribution (the Campbell water retention parameter used in a modified Burdine capillary tube model), and the other is a calibrated, empirical function of soil texture (silt + sand fraction). Both the Buckingham-Burdine-Campbell (BBC) and the Buckingham/soil texture-based D{sub s}/D{sub 0}({epsilon}) models described well the observed soil type effects on gas diffusivity and gave improved predictions compared with soil type independent models when tested against an independent data set for six undisturbed surface soils. This study emphasizes that simple but soil-type-dependent power function D{sub s}/D{sub 0}({epsilon}) models can adequately describe and predict gas diffusivity in undisturbed soil. The authors recommend the new BBC model as basis for modeling gas transport and reactions in undisturbed soil systems.« less

Influence of ultrasonic energy on dispersion of aggregates and released amounts of organic matter and polyvalent cations

NASA Astrophysics Data System (ADS)

Kaiser, M.; Kleber, M.; Berhe, A. A.

2010-12-01

Aggregates play important roles in soil carbon storage and stabilization. Identification of scale-dependent mechanisms of soil aggregate formation and stability is necessary to predict and eventually manage the flow of carbon through terrestrial ecosystems. Application of ultrasonic energy is a common tool to disperse soil aggregates. In this study, we used ultra sonic energy (100 to 2000 J cm-3) to determine the amount of polyvalent cations and organic matter involved in aggregation processes in three arable and three forest soils that varied in soil mineral composition. To determine the amount of organic matter and cations released after application of different amount of ultrasonic energy, we removed the coarse fraction (>250 µm). The remaining residue (<250 µm) was mixed with water and ultrasonically dispersed by application of 100, 200, 400, 500, 1000, 1500 and 2000 J cm-3 energy. After centrifugation the supernatant was filtered and the solid residue freeze dried before we analyzed the amounts of water-extracted organic carbon (OC), Fe, Al, Ca, Mn, and Mg in the filtrates. The extracted OM and solid residues were further characterized by Fourier Transformed Infra Red spectroscopy and Scanning Electron Microscopy. Our results show a linear increase in amount of dissolved OC with increasing amounts of ultra sonic energy up to 1500 J cm-3 indicating maximum dispersion of soil aggregates at this energy level independent from soil type or land use. In contrast to Mn, and Mg, the amounts of dissolved Ca, Fe, and Al increase with increasing ultra sonic energy up to 1500 J cm-3. At 1500 J cm-3, the absolute amounts of OC, Ca, Fe, and Al released were specific for each soil type, likely indicating differences in type of OM-mineral interactions involved in micro-scaled aggregation processes. The amounts of dissolved Fe, and Al released after an application of 1500 J cm-3 are not related to oxalate- and dithionite- extractable, or total Al content indicating less disintegration of pedogenic oxides or clay minerals due to high levels of ultrasonic energy.

Converging patterns of uptake and hydraulic redistribution of soil water in contrasting woody vegetation types.

Treesearch

F.C. Meinzer; J.R. Brooks; S. Bucci; G. Goldstein; F.G. Scholz; J.M. Arren

2004-01-01

We used concurrent measurements of soil water content and soil water potential (Ψsoil) to assess the effects of Ψsoil on uptake and hydraulic redistribution (HR) of soil water by roots during seasonal drought cycles at six sites characterized by differences in the types and amounts of woody vegetations and...

Vegetation types on acid soils of Micronesia

Treesearch

Marjorie C. Falanruw; Thomas G.. Cole; Craig D. Whitesell

1987-01-01

The soils and vegetation of the Caroline high islands, Federated States of Micronesia, are being mapped by the U.S. Department of Agriculture's Forest Service and Soil Conservation Service. By the end of 1987, vegetation maps and reports on Kosrae, Pohnpei, Yap, four Truk Islands, and Palau are expected to be available. To compare soil types with vegetation types...

Variations of Soil Lead in Different Land Uses Along the Urbanization Gradient in the Beijing Metropolitan Area

PubMed Central

Mao, Qizheng; Huang, Ganlin; Ma, Keming; Sun, Zexiang

2014-01-01

Understanding the spatial pattern of soil lead (Pb) levels is essential to protecting human health. Most previous studies have examined soil Pb distributions by either urbanization gradient or land-use type. Few studies, however, have examined both factors together. It remains unclear whether the impacts of land use on soil Pb levels are consistent along the urbanization gradient. To fill this gap, we investigated variations in soil Pb level under different land-use types along the urbanization gradient in Beijing, China. We classified the degree of urbanization as the urban core, transitional zone, or suburban area and the land-use type as industrial area, roadside, residential area, institutional area, road greenbelt, park, or forest. Our results showed that the range of soil Pb levels in Beijing is <1 mg/kg–292 mg/kg, with a mean of 22 mg/kg. Along the urbanization gradient, the mean soil Pb level increased from the suburban area to the urban core. Land-use types have an impact on soil Pb levels, however, when the degree of urbanization is considered, the impact from land use on soil Pb level was only significant in the transitional zone. Parks and road greenbelts were found to have lower soil Pb, primarily due to soil restoration. Roadside and residential areas were found to have higher soil Pb because of traffic emissions, leaded paint, and previous industrial contamination. In the urban core and suburban area, the soil Pb level showed no significant differences among various land-use types. Given the results of soil Pb in various land-use types, we suggest that future studies consider the urbanization gradient in which different land-use samples are located. PMID:24646863

Variations of soil lead in different land uses along the urbanization gradient in the Beijing metropolitan area.

PubMed

Mao, Qizheng; Huang, Ganlin; Ma, Keming; Sun, Zexiang

2014-03-18

Understanding the spatial pattern of soil lead (Pb) levels is essential to protecting human health. Most previous studies have examined soil Pb distributions by either urbanization gradient or land-use type. Few studies, however, have examined both factors together. It remains unclear whether the impacts of land use on soil Pb levels are consistent along the urbanization gradient. To fill this gap, we investigated variations in soil Pb level under different land-use types along the urbanization gradient in Beijing, China. We classified the degree of urbanization as the urban core, transitional zone, or suburban area and the land-use type as industrial area, roadside, residential area, institutional area, road greenbelt, park, or forest. Our results showed that the range of soil Pb levels in Beijing is <1 mg/kg-292 mg/kg, with a mean of 22 mg/kg. Along the urbanization gradient, the mean soil Pb level increased from the suburban area to the urban core. Land-use types have an impact on soil Pb levels, however, when the degree of urbanization is considered, the impact from land use on soil Pb level was only significant in the transitional zone. Parks and road greenbelts were found to have lower soil Pb, primarily due to soil restoration. Roadside and residential areas were found to have higher soil Pb because of traffic emissions, leaded paint, and previous industrial contamination. In the urban core and suburban area, the soil Pb level showed no significant differences among various land-use types. Given the results of soil Pb in various land-use types, we suggest that future studies consider the urbanization gradient in which different land-use samples are located.

[Effects of land use type on the distribution of organic carbon in different sized soil particles effects of land use type on the distribution of organic carbon in different sized soil particles and its relationships to herb biomass in hilly red soil region of South China].

PubMed

Li, Zhong-Wu; Guo, Wang; Wang, Xiao-Yan; Shen, Wei-Ping; Zhang, Xue; Chen, Xiao-Lin; Zhang, Yue-Nan

2012-04-01

The changes in organic carbon content in different sized soil particles under different land use patterns partly reflect the variation of soil carbon, being of significance in revealing the process of soil organic carbon cycle. Based on the long-term monitoring of soil erosion, and by the methods of soil particle size fractionation, this paper studied the effects of different land use types (wasteland, pinewood land, and grassland) on the distribution of organic carbon content in different sized soil particles and its relationships to the herb biomass. Land use type and slope position had obvious effects on the organic carbon content in different sized soil particles, and the organic carbon content was in the order of grassland > pinewood land > wasteland. The proportion of the organic carbon in different sized soil particles was mainly depended on the land use type, and had little relationships with slope position. According to the analysis of the ratio of particle-associated organic carbon to mineral-associated organic carbon (POC/MOC), the soil organic carbon in grassland was easily to be mineralized, whereas that in wasteland and pinewood land was relatively stable. On the slopes mainly in hilly red soil region, the soil organic carbon in sand fraction had great effects on herb biomass.

Temporal changes in soil C-N-P stoichiometry over the past 60 years across subtropical China.

PubMed

Yu, Zaipeng; Wang, Minhuang; Huang, Zhiqun; Lin, Teng-Chiu; Vadeboncoeur, Matthew A; Searle, Eric B; Chen, Han Y H

2018-03-01

Controlled experiments have shown that global changes decouple the biogeochemical cycles of carbon (C), nitrogen (N), and phosphorus (P), resulting in shifting stoichiometry that lies at the core of ecosystem functioning. However, the response of soil stoichiometry to global changes in natural ecosystems with different soil depths, vegetation types, and climate gradients remains poorly understood. Based on 2,736 observations along soil profiles of 0-150 cm depth from 1955 to 2016, we evaluated the temporal changes in soil C-N-P stoichiometry across subtropical China, where soils are P-impoverished, with diverse vegetation, soil, and parent material types and a wide range of climate gradients. We found a significant overall increase in soil total C concentration and a decrease in soil total P concentration, resulting in increasing soil C:P and N:P ratios during the past 60 years across all soil depths. Although average soil N concentration did not change, soil C:N increased in topsoil while decreasing in deeper soil. The temporal trends in soil C-N-P stoichiometry differed among vegetation, soil, parent material types, and spatial climate variations, with significantly increased C:P and N:P ratios for evergreen broadleaf forest and highly weathered Ultisols, and more pronounced temporal changes in soil C:N, N:P, and C:P ratios at low elevations. Our sensitivity analysis suggests that the temporal changes in soil stoichiometry resulted from elevated N deposition, rising atmospheric CO 2 concentration and regional warming. Our findings revealed that the responses of soil C-N-P and stoichiometry to long-term global changes have occurred across the whole soil depth in subtropical China and the magnitudes of the changes in soil stoichiometry are dependent on vegetation types, soil types, and spatial climate variations. © 2017 John Wiley & Sons Ltd.

Screening for heat transport by groundwater in closed geothermal systems.

PubMed

Ferguson, Grant

2015-01-01

Heat transfer due to groundwater flow can significantly affect closed geothermal systems. Here, a screening method is developed, based on Peclet numbers for these systems and Darcy's law. Conduction-only conditions should not be expected where specific discharges exceed 10(-8)  m/s. Constraints on hydraulic gradients allow for preliminary screening for advection based on rock or soil types. Identification of materials with very low hydraulic conductivity, such as shale and intact igneous and metamorphic rock, allow for analysis with considering conduction only. Variability in known hydraulic conductivity allows for the possibility of advection in most other rocks and soil types. Further screening relies on refinement of estimates of hydraulic gradients and hydraulic conductivity through site investigations and modeling until the presence or absence of conduction can be confirmed. © 2014, National Ground Water Association.

Variation in Soil Respiration across Soil and Vegetation Types in an Alpine Valley

PubMed Central

Rubin, Aurélie

2016-01-01

Background and Aims Soils of mountain regions and their associated plant communities are highly diverse over short spatial scales due to the heterogeneity of geological substrates and highly dynamic geomorphic processes. The consequences of this heterogeneity for biogeochemical transfers, however, remain poorly documented. The objective of this study was to quantify the variability of soil-surface carbon dioxide efflux, known as soil respiration (Rs), across soil and vegetation types in an Alpine valley. To this aim, we measured Rs rates during the peak and late growing season (July-October) in 48 plots located in pastoral areas of a small valley of the Swiss Alps. Findings Four herbaceous vegetation types were identified, three corresponding to different stages of primary succession (Petasition paradoxi in pioneer conditions, Seslerion in more advanced stages and Poion alpinae replacing the climactic forests), as well as one (Rumicion alpinae) corresponding to eutrophic grasslands in intensively grazed areas. Soils were developed on calcareous alluvial and colluvial fan deposits and were classified into six types including three Fluvisols grades and three Cambisols grades. Plant and soil types had a high level of co-occurrence. The strongest predictor of Rs was soil temperature, yet we detected additional explanatory power of sampling month, showing that temporal variation was not entirely reducible to variations in temperature. Vegetation and soil types were also major determinants of Rs. During the warmest month (August), Rs rates varied by over a factor three between soil and vegetation types, ranging from 2.5 μmol m-2 s-1 in pioneer environments (Petasition on Very Young Fluvisols) to 8.5 μmol m-2 s-1 in differentiated soils supporting nitrophilous species (Rumicion on Calcaric Cambisols). Conclusions Overall, this study provides quantitative estimates of spatial and temporal variability in Rs in the mountain environment, and demonstrates that estimations of soil carbon efflux at the watershed scale in complex geomorphic terrain have to account for soil and vegetation heterogeneity. PMID:27685955

Seasonality of semi-arid and savanna-type ecosystems in an Earth system model

NASA Astrophysics Data System (ADS)

Dahlin, K.; Swenson, S. C.; Lombardozzi, D.; Kamoske, A.

2016-12-01

Recent work has identified semi-arid and savanna-type (SAST) ecosystems as a critical component of interannual variability in the Earth system (Poulter et al. 2014, Ahlström et al. 2015), yet our understanding of the spatial and temporal patterns present in these systems remains limited. There are three major factors that contribute to the complex behavior of SAST ecosystems, globally. First is leaf phenology, the timing of the appearance, presence, and senescence of plant leaves. Plants grow and drop their leaves in response to a variety of cues, including soil moisture, rainfall, day length, and relative humidity, and alternative phenological strategies might often co-exist in the same location. The second major factor in savannas is soil moisture. The complex nature of soil behavior under extremely dry, then extremely wet conditions is critical to our understanding of how savannas function. The third factor is fire. Globally, virtually all savanna-type ecosystems operate with some non-zero fire return interval. Here we compare model output from the Community Land Model (CLM5-BGC) in SAST regions to remotely sensed data on these three variables - phenology (MODIS LAI), soil moisture (SMAP), and fire (GFED4) - assessing both annual spatial patterns and intra-annual variability, which is critical in these highly variable systems. We present new SAST-specific first- and second-order benchmarks, including numbers of annual LAI peaks (often >1 in SAST systems) and correlations between soil moisture, LAI, and fire. Developing a better understanding of how plants respond to seasonal patterns is a critical first step in understanding how SAST ecosystems will respond to and influence climate under future scenarios.

A modeling approach to soil type and precipitation seasonality interactions on bioenergy crop production

USDA-ARS?s Scientific Manuscript database

Precipitation limits primary production by affecting soil moisture, and soil type interacts with soil moisture to determine soil water availability to plants. We used ALMANAC, a process-based model, to simulate switchgrass (Panicum virgatum var. Alamo) biomass production in Central Texas under thre...

[Effects of land use change on soil active organic carbon in deep soils in Hilly Loess Plateau region of Northwest China].

PubMed

Zhang, Shuai; Xu, Ming-Xiang; Zhang, Ya-Feng; Wang, Chao-Hua; Chen, Gai

2015-02-01

Response of soil active organic carbon to land-use change has become a hot topic in current soil carbon and nutrient cycling study. Soil active organic carbon distribution characteristics in soil profile under four land-use types were investigated in Ziwuling forest zone of the Hilly Loess Plateau region. The four types of land-use changes included natural woodland converted into artificial woodland, natural woodland converted into cropland, natural shrubland converted into cropland and natural shrubland converted into revegetated grassland. Effects of land-use changes on soil active organic carbon in deep soil layers (60-200 cm) were explored by comparison with the shallow soil layers (0-60 cm). The results showed that: (1) The labile organic carbon ( LOC) and microbial carbon (MBC) content were mainly concentrated in the shallow 0-60 cm soil, which accounted for 49%-66% and 71%-84% of soil active organic carbon in the profile (0-200 cm) under different land-use types. Soil active organic carbon content in shallow soil was significantly varied for the land-use changes types, while no obvious difference was observed in soil active organic carbon in deep soil layer. (2) Land-use changes exerted significant influence on soil active organic carbon, the active organic carbon in shallow soil was more sensitive than that in deep soil. The four types of land-use changes, including natural woodland to planted woodland, natural woodland to cropland, natural shrubland to revegetated grassland and natural shrubland to cropland, LOC in shallow soil was reduced by 10%, 60%, 29%, 40% and LOC in the deep layer was decreased by 9%, 21%, 12%, 1%, respectively. MBC in the shallow soil was reduced by 24% 73%, 23%, 56%, and that in the deep layer was decreased by 25%, 18%, 8% and 11%, respectively. (Land-use changes altered the distribution ratio of active organic carbon in soil profile. The ratio between LOC and SOC in shallow soil increased when natural woodland and shrubland were converted into farmland, but no obvious difference was observed in deep soil. The ratio of MBC/SOC in shallow soil decreased when natural shrubland was converted into farmland, also, no significant difference was detected in the ratio of MBC/SOC for other land-use change types. The results suggested that land-use change exerted significant influence on soil active organic carbon content and distribution proportion in soil profile. Soil organic carbon in deep soil was more stable than that in shallow soil.

Bacterial microbiomes of individual ectomycorrhizal Pinus sylvestris roots are shaped by soil horizon and differentially sensitive to nitrogen addition.

PubMed

Marupakula, Srisailam; Mahmood, Shahid; Jernberg, Johanna; Nallanchakravarthula, Srivathsa; Fahad, Zaenab A; Finlay, Roger D

2017-11-01

Plant roots select non-random communities of fungi and bacteria from the surrounding soil that have effects on their health and growth, but we know little about the factors influencing their composition. We profiled bacterial microbiomes associated with individual ectomycorrhizal Pinus sylvestris roots colonized by different fungi and analyzed differences in microbiome structure related to soils from distinct podzol horizons and effects of short-term additions of N, a growth-limiting nutrient commonly applied as a fertilizer, but known to influence patterns of carbon allocation to roots. Ectomycorrhizal roots growing in soil from different horizons harboured distinct bacterial communities. The fungi colonizing individual roots had a strong effect on the associated bacterial communities. Even closely related species within the same ectomycorrhizal genus had distinct bacterial microbiomes in unfertilized soil, but fertilization removed this specificity. Effects of N were rapid and context dependent, being influenced by both soil type and the particular ectomycorrhizal fungi involved. Fungal community composition changed in soil from all horizons, but bacteria only responded strongly to N in soil from the B horizon where community structure was different and bacterial diversity was significantly reduced, possibly reflecting changed carbon allocation patterns. © 2017 Society for Applied Microbiology and John Wiley & Sons Ltd.

Phenylurea herbicide sorption to biochars and agricultural soil

PubMed Central

WANG, DAOYUAN; MUKOME, FUNGAI N. D.; YAN, DENGHUA; WANG, HAO; SCOW, KATE M.; PARIKH, SANJAI J.

2016-01-01

Biochar is increasingly been used as a soil amendment to improve water holding capacity, reduce nutrient leaching, increase soil pH and also as a means to reduce contamination through sorption of heavy metals or organic pollutants. The sorption behavior of three phenylurea herbicides (monuron, diuron, linuron) on five biochars (Enhanced Biochar, Hog Waste, Turkey Litter, Walnut Shell and Wood Feedstock) and an agricultural soil (Yolo silt loam) was investigated using a batch equilibration method. Sorption isotherms of herbicides to biochars were well described by the Freundlich model (R2 = 0.93 -- 0.97). The adsorption KF values ranged from 6.94 to 1306.95 mg kg−1 and indicated the sorption of herbicides in the biochars and Yolo soil was in the sequence of linuron > diuron > monuron and walnut shell biochar > wood feedstock biochar > turkey litter biochar > enhanced biochar > hog waste biochar > Yolo soil. These data show that sorption of herbicides to biochar can have both positive (reduced off-site transport) and negative (reduced herbicide efficacy) implications and specific biochar properties, such as H/C ratio and surface area, should be considered together with soil type, agriculture chemical and climate condition in biochar application to agricultural soil to optimize the system for both agricultural and environmental benefits. PMID:26065514

Impact of land-use change and soil organic carbon quality on microbial diversity in soils across Europe.

PubMed

Szoboszlay, Márton; Dohrmann, Anja B; Poeplau, Christopher; Don, Axel; Tebbe, Christoph C

2017-12-01

Land-use and their change have dramatic consequences for above-ground biodiversity, but their impact on soil microbial communities is poorly understood. In this study, soils from 19 European sites representing conversion of croplands to grasslands or forests and of grasslands to croplands or forests were characterized for microbial abundance and bacterial diversity. The abundance of Bacteria and Fungi but not Archaea responded to land-use change. Site was the major determinant of the soil bacterial community structure, explaining 32% of the variation in 16S rRNA gene diversity. While the quantity of soil organic carbon (SOC) only explained 5% of the variation, SOC when differentiated by its quality could explain 22%. This was similar to the impact of soil pH (21%) and higher than that of land-use type (15%). Croplands had the highest bacterial diversity. Converting croplands to grassland caused an increase of Verrucomicrobia; croplands to forest increased Rhizobiales but decreased Bacteroidetes and Nitrospirae; and grasslands to cropland increased Gemmatimonadetes but decreased Verrucomicrobia and Planctomycetes. Network analysis identified associations between particular SOC fractions and specific bacterial taxa. We conclude that land-use-related effects on soil microorganisms can be consistently observed across a continental scale. © FEMS 2017. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Utilization of microwave energy for decontamination of oil polluted soils.

PubMed

Iordache, Daniela; Niculae, Dumitru; Francisc, Ioan Hathazi

2010-01-01

Soil oil (petroleum) product pollution represents a great environmental threat as it may contaminate the neighboring soils and surface and underground water. Liquid fuel contamination may occur anywhere during oil (petroleum) product transportation, storing, handling and utilization. The polluted soil recovery represents a complex process due to the wide range of physical, chemical and biological properties of soils which should be analyzed in connection with the study of the contaminated soil behavior under the microwave field action. The soil, like any other non-metallic material, can be heated through microwave energy absorption due to the dielectric losses, expressed by its dielectric complex constant. Oil polluted soil behaves differently in a microwave field depending on the nature, structure and amount of the polluting fuel. Decontamination is performed through volatilization and retrieval of organic contaminant volatile components. After decontamination only a soil fixed residue remains, which cannot penetrate the underground anymore. In carrying out the soil recovery process by means of this technology we should also consider the soil characteristics such as: the soil type, temperature, moisture.The first part of the paper presents the theoretical aspects relating to the behavior of the polluted soil samples in the microwave field, as well as their relating experimental data. The experimental data resulting from the analysis of soils with a different level of pollution point out that the degree of pollutant recovery is high, contributing to changing the initial classification of soils from the point of view of pollution. The paper graphically presents the levels of microwave generated and absorbed power in soil samples, soil temperature during experimentations, specific processing parameters in a microwave field. It also presents the constructive solution of the microwave equipment designed for the contaminated soil in situ treatment.

A strategy for the survey of urban garden soils

NASA Astrophysics Data System (ADS)

Schwartz, C.; Chenot, E. D.; Cortet, J.; Douay, F.; Dumat, C.; Pernin, C.; Pourrut, B.

2012-04-01

In France and all over the world, there is no systematic data available on the quality (fertility and contamination) of garden soils. Nevertheless, there is a growing need for a typology and for a method dedicated to national and international garden soil survey. This inventory is much needed in the context of environmental risk assessment, to predict the potential impact on human health of the direct contact with garden soils and of the consumption of vegetables from gardens. The state of the art on the international knowledge on garden soils, gardening practices and food production, shows that gardens remain poorly known and very complex ecological, economical and social systems. Their global quality is the result of a wide number of factors including environment, history, specific characteristics of the gardens, gardeners and their practices, plant and/or animal productions and socio-economic context. The aim is then to better know the determinism of the agronomic, environmental and sanitary properties of gardens as a function of gardening practices and their impact on the quality of soils and plants. We propose a definition of "garden" and more generally of all the field "garden". The system "garden" is represented by attributes (soil and plant characteristics) and factors with various impacts (e.g. environment > soil parent material > former land uses > age and sex of gardener > gardening practices > socio-professional group > type and proportion of productions > climate > age of the garden > size of the garden > education, information > cultural origin > functions of the garden > regulations). A typology of gardens including 7 selected factors and associated categories and a method for describing, sampling and characterizing a population of gardens representative (for a country) are proposed. Based on the statistical analysis on regional databases, we have determined and proposed an optimum size for the collected population of garden soils. The discussion of the results highlights the main indicators of soil quality and the method for a survey of garden soils is proposed. These results and the resulting approach might be validated and used on a worldwide scale to collect garden soil samples with the objective of agronomic, environmental and sanitary studies adapted to this type of urban agriculture.

Soil fertility controls soil-atmosphere carbon dioxide and methane fluxes in a tropical landscape converted from lowland forest to rubber and oil palm plantations

NASA Astrophysics Data System (ADS)

Hassler, E.; Corre, M. D.; Tjoa, A.; Damris, M.; Utami, S. R.; Veldkamp, E.

2015-10-01

Expansion of palm oil and rubber production, for which global demand is increasing, causes rapid deforestation in Sumatra, Indonesia, and is expected to continue in the next decades. Our study aimed to (1) quantify changes in soil CO2 and CH4 fluxes with land-use change and (2) determine their controlling factors. In Jambi Province, Sumatra, we selected two landscapes on heavily weathered soils that differ mainly in texture: loam and clay Acrisol soils. In each landscape, we investigated the reference land-use types (forest and secondary forest with regenerating rubber) and the converted land-use types (rubber, 7-17 years old, and oil palm plantations, 9-16 years old). We measured soil CO2 and CH4 fluxes monthly from December 2012 to December 2013. Annual soil CO2 fluxes from the reference land-use types were correlated with soil fertility: low extractable phosphorus (P) coincided with high annual CO2 fluxes from the loam Acrisol soil that had lower fertility than the clay Acrisol soil (P < 0.05). Soil CO2 fluxes from the oil palm (107.2 to 115.7 mg C m-2 h-1) decreased compared to the other land-use types (between 178.7 and 195.9 mg C m-2 h-1; P < 0.01). Across land-use types, annual CO2 fluxes were positively correlated with soil organic carbon (C) and negatively correlated with 15N signatures, extractable P and base saturation. This suggests that the reduced soil CO2 fluxes from oil palm were the result of strongly decomposed soil organic matter and reduced soil C stocks due to reduced litter input as well as being due to a possible reduction in C allocation to roots due to improved soil fertility from liming and P fertilization in these plantations. Soil CH4 uptake in the reference land-use types was negatively correlated with net nitrogen (N) mineralization and soil mineral N, suggesting N limitation of CH4 uptake, and positively correlated with exchangeable aluminum (Al), indicating a decrease in methanotrophic activity at high Al saturation. Reduction in soil CH4 uptake in the converted land-use types (ranging from -3.0 to -14.9 μg C m-2 h-1) compared to the reference land-use types (ranging from -20.8 to -40.3 μg C m-2 h-1; P < 0.01) was due to a decrease in soil N availability in the converted land-use types. Our study shows for the first time that differences in soil fertility control the soil-atmosphere exchange of CO2 and CH4 in a tropical landscape, a mechanism that we were able to detect by conducting this study on the landscape scale.

Comparative Efficiency of the Fenwick Can and Schuiling Centrifuge in Extracting Nematode Cysts from Different Soil Types

PubMed Central

Bellvert, Joaquim; Crombie, Kieran; Horgan, Finbarr G.

2008-01-01

The Fenwick can and Schuiling centrifuge are widely used to extract nematode cysts from soil samples. The comparative efficiencies of these two methods during cyst extraction have not been determined for different soil types under different cyst densities. Such information is vital for statutory laboratories that must choose a method for routine, high-throughput soil monitoring. In this study, samples of different soil types seeded with varying densities of potato cyst nematode (Globodera rostochiensis) cysts were processed using both methods. In one experiment, with 200 ml samples, recovery was similar between methods. In a second experiment with 500 ml samples, cyst recovery was higher using the Schuiling centrifuge. For each method and soil type, cyst extraction efficiency was similar across all densities tested. Extraction was efficient from pure sand (Fenwick 72%, Schuiling 84%) and naturally sandy soils (Fenwick 62%, Schuiling 73%), but was significantly less efficient from clay-soil (Fenwick 42%, Schuiling 44%) and peat-soil with high organic matter content (Fenwick 35%, Schuiling 33%). Residual moisture (<10% w/w) in samples prior to analyses reduced extraction efficiency, particularly for sand and sandy soils. For each soil type and method, there were significant linear relationships between the number of cysts extracted and the numbers of cysts in the samples. We discuss the advantages and disadvantages of each extraction method for cyst extraction in statutory soil laboratories. PMID:19259516

A method for soil moisture probes calibration and validation of satellite estimates.

PubMed

Holzman, Mauro; Rivas, Raúl; Carmona, Facundo; Niclòs, Raquel

2017-01-01

Optimization of field techniques is crucial to ensure high quality soil moisture data. The aim of the work is to present a sampling method for undisturbed soil and soil water content to calibrated soil moisture probes, in a context of the SMOS (Soil Moisture and Ocean Salinity) mission MIRAS Level 2 soil moisture product validation in Pampean Region of Argentina. The method avoids soil alteration and is recommended to calibrated probes based on soil type under a freely drying process at ambient temperature. A detailed explanation of field and laboratory procedures to obtain reference soil moisture is shown. The calibration results reflected accurate operation for the Delta-T thetaProbe ML2x probes in most of analyzed cases (RMSE and bias ≤ 0.05 m 3 /m 3 ). Post-calibration results indicated that the accuracy improves significantly applying the adjustments of the calibration based on soil types (RMSE ≤ 0.022 m 3 /m 3 , bias ≤ -0.010 m 3 /m 3 ). •A sampling method that provides high quality data of soil water content for calibration of probes is described.•Importance of calibration based on soil types.•A calibration process for similar soil types could be suitable in practical terms, depending on the required accuracy level.

Influence of elk grazing on soil properties in Rocky Mountain National Park

USGS Publications Warehouse

Binkley, Dan; Singer, F.; Kaye, M.; Rochelle, R.

2003-01-01

We used three 35-year exclosures to examine the effects of high elk populations on a variety of soil properties in three vegetation types: upland sagebrush, aspen, and meadow. Grazing and hoof action by elk significantly increased bulk density (from 0.87 kg/l ungrazed to 0.94 kg/l grazed), with greater effects on soils with fewer rocks. Grazing substantially reduced extractable calcium, magnesium, potassium and phosphorus in the sagebrush type, but not in the aspen or meadow types. The only grazing effect on pH came in aspen types, where grazing prevented aspen establishment, and kept soil pH about 0.7 units higher than under aspen inside the exclosures. Grazing had no overall effect on total soil C and N across all exclosures and vegetation types. The availability of soil nitrogen, indexed by in-field resin bags and net mineralization in soil cores, showed little overall effect of grazing. Limited data on soil leaching indicated a possibility of strong increases in nitrate leaching with grazing for an aspen vegetation type at one exclosure. Although we found little effect of grazing on soil N supply, we note that N fertilization doubled the production of grasses and shrubs; if grazing eventually led to changes in soil N supply, species composition and growth would likely change. ?? 2003 Elsevier B.V. All rights reserved.

Differences in Plant Traits among N-fixing Trees in Hawaii Affect Understory Nitrogen Cycling

NASA Astrophysics Data System (ADS)

August-Schmidt, E.; D'Antonio, C. M.

2016-12-01

Nitrogen (N) fixing trees are frequently used to restore soil functions to degraded ecosystems because they can increase soil organic matter and N availability. Although N-fixers are lumped into a single functional group, the quality and quantity of the plant material they produce and the rate at which they accrete and add N to the cycling pool likely vary. This talk will focus on the questions: (1) How does N-cycling differ among N-fixing tree species? And (2) Which plant traits are most important in distinguishing the soil N environment? To address these questions, we investigated planted stands of two Hawaiian native N-fixing trees (Acacia koa and Sophora chrysophylla) and `natural' stands of an invasive N-fixing tree (Morella faya) in burned seasonal submontane woodlands in Hawaii Volcanoes National Park. We measured the relative availability of nitrogen in the soil pool and understory plant community as well as characterizing the rate and amount of N cycling in these stands both in the field and using long term soil incubations in the laboratory. We found that N is cycled very differently under these three N-fixers and that this correlates with differences in their leaf traits. S. chrysophylla had the highest foliar %N and highest specific leaf area, and stands of these trees are associated with faster N-cycling, resulting in greater N availability compared to all other site types. Incubated S. chrysophylla soils mineralized almost twice as much N as any other soil type over the course of the experiment. The comparatively high-N environment under S. chrysophylla suggests that litter quality may be more important than litter quantity in determining nitrogen availability to the understory community.

On the use of tower-flux measurements to assess the performance of global ecosystem models

NASA Astrophysics Data System (ADS)

El Maayar, M.; Kucharik, C.

2003-04-01

Global ecosystem models are important tools for the study of biospheric processes and their responses to environmental changes. Such models typically translate knowledge, gained from local observations, into estimates of regional or even global outcomes of ecosystem processes. A typical test of ecosystem models consists of comparing their output against tower-flux measurements of land surface-atmosphere exchange of heat and mass. To perform such tests, models are typically run using detailed information on soil properties (texture, carbon content,...) and vegetation structure observed at the experimental site (e.g., vegetation height, vegetation phenology, leaf photosynthetic characteristics,...). In global simulations, however, earth's vegetation is typically represented by a limited number of plant functional types (PFT; group of plant species that have similar physiological and ecological characteristics). For each PFT (e.g., temperate broadleaf trees, boreal conifer evergreen trees,...), which can cover a very large area, a set of typical physiological and physical parameters are assigned. Thus, a legitimate question arises: How does the performance of a global ecosystem model run using detailed site-specific parameters compare with the performance of a less detailed global version where generic parameters are attributed to a group of vegetation species forming a PFT? To answer this question, we used a multiyear dataset, measured at two forest sites with contrasting environments, to compare seasonal and interannual variability of surface-atmosphere exchange of water and carbon predicted by the Integrated BIosphere Simulator-Dynamic Global Vegetation Model. Two types of simulations were, thus, performed: a) Detailed runs: observed vegetation characteristics (leaf area index, vegetation height,...) and soil carbon content, in addition to climate and soil type, are specified for model run; and b) Generic runs: when only observed climates and soil types at the measurement sites are used to run the model. The generic runs were performed for the number of years equal to the current age of the forests, initialized with no vegetation and a soil carbon density equal to zero.

Cotransformation of Trichoderma harzianum with β-Glucuronidase and Green Fluorescent Protein Genes Provides a Useful Tool for Monitoring Fungal Growth and Activity in Natural Soils†

PubMed Central

Bae, Yeoung-Seuk; Knudsen, Guy R.

2000-01-01

Trichoderma harzianum was cotransformed with genes encoding green fluorescent protein (GFP), β-glucuronidase (GUS), and hygromycin B (hygB) resistance, using polyethylene glycol-mediated transformation. One cotransformant (ThzID1-M3) was mitotically stable for 6 months despite successive subculturing without selection pressure. ThzID1-M3 morphology was similar to that of the wild type; however, the mycelial growth rate on agar was reduced. ThzID1-M3 was formed into calcium alginate pellets and placed onto buried glass slides in a nonsterile soil, and its ability to grow, sporulate, and colonize sclerotia of Sclerotinia sclerotiorum was compared with that of the wild-type strain. Wild-type and transformant strains both colonized sclerotia at levels above those of indigenous Trichoderma spp. in untreated controls. There were no significant differences in colonization levels between wild-type and cotransformant strains; however, the presence of the GFP and GUS marker genes permitted differentiation of introduced Trichoderma from indigenous strains. GFP activity was a useful tool for nondestructive monitoring of the hyphal growth of the transformant in a natural soil. The green color of cotransformant hyphae was clearly visible with a UV epifluorescence microscope, while indigenous fungi in the same samples were barely visible. Green-fluorescing conidiophores and conidia were observed within the first 3 days of incubation in soil, and this was followed by the formation of terminal and intercalary chlamydospores and subsequent disintegration of older hyphal segments. Addition of 5-bromo-4-chloro-3-indolyl-β-d-glucuronic acid (X-Gluc) substrate to recovered glass slides confirmed the activity of GUS as well as GFP in soil. Our results suggest that cotransformation with GFP and GUS can provide a valuable tool for the detection and monitoring of specific strains of T. harzianum released into the soil. PMID:10653755

Differential Responses of Arctic Vegetation to Nutrient Enrichment by Plankton- and Fish-Eating Colonial Seabirds in Spitsbergen

PubMed Central

Zwolicki, Adrian; Zmudczyńska-Skarbek, Katarzyna; Matuła, Jan; Wojtuń, Bronisław; Stempniewicz, Lech

2016-01-01

The role of seabirds as sea-land biovectors of nutrients is well documented. However, no studies have examined whether and how colonial seabirds that differ in diet may influence terrestrial vegetation. Therefore, the purpose of the study was to describe and compare plant communities located in the vicinity of the two most common types of seabird colonies in Arctic, occupied by piscivorous or planktivorous species. Within 46 plots arranged in four transects in the vicinity of planktivorous (little auk, Alle alle) and piscivorous colonies (mixed colony of Brunnich’s guillemot, Uria lomvia, and black-legged kittiwake, Rissa tridactyla) we measured the following: guano deposition, physical and chemical characteristics of soil, total nitrogen and its stable isotope signatures in soil and plants, ground vegetation cover of vascular plants and mosses, and the occurrence of lichens, algae and cyanobacteria. Using LINKTREE analysis, we distinguished five plant communities, which reflected declining influence along a birds fertilization gradient measured as guano deposition. SIMPROOF test revealed that these communities differed significantly in species composition, with the differences related to total soil nitrogen content and δ15N, distinctive levels of phosphates, potassium and nitrates, and physical soil properties, i.e., pH, conductivity and moisture. The communities were also clearly distinguished by distance from the bird colony. The two colony types promoted development of specific plant communities: the immediate vicinity of the planktivorous colony characterized by a Deschampsia alpina–Cerastium arcticum community while under the piscivorous colony a Cochlearia groenlandica–Poa alpina community was present. Despite the similar size of the colonies and similar magnitude of guano input, differences between ornithogenic communities were connected mostly to phosphate content in the soil. Our results show that the guano input from seabirds which have different diets can affect High Arctic vegetation in specific and more complex ways than previously realized. PMID:28083002

Differential Responses of Arctic Vegetation to Nutrient Enrichment by Plankton- and Fish-Eating Colonial Seabirds in Spitsbergen.

PubMed

Zwolicki, Adrian; Zmudczyńska-Skarbek, Katarzyna; Matuła, Jan; Wojtuń, Bronisław; Stempniewicz, Lech

2016-01-01

The role of seabirds as sea-land biovectors of nutrients is well documented. However, no studies have examined whether and how colonial seabirds that differ in diet may influence terrestrial vegetation. Therefore, the purpose of the study was to describe and compare plant communities located in the vicinity of the two most common types of seabird colonies in Arctic, occupied by piscivorous or planktivorous species. Within 46 plots arranged in four transects in the vicinity of planktivorous (little auk, Alle alle ) and piscivorous colonies (mixed colony of Brunnich's guillemot, Uria lomvia , and black-legged kittiwake, Rissa tridactyla ) we measured the following: guano deposition, physical and chemical characteristics of soil, total nitrogen and its stable isotope signatures in soil and plants, ground vegetation cover of vascular plants and mosses, and the occurrence of lichens, algae and cyanobacteria. Using LINKTREE analysis, we distinguished five plant communities, which reflected declining influence along a birds fertilization gradient measured as guano deposition. SIMPROOF test revealed that these communities differed significantly in species composition, with the differences related to total soil nitrogen content and δ 15 N, distinctive levels of phosphates, potassium and nitrates, and physical soil properties, i.e., pH, conductivity and moisture. The communities were also clearly distinguished by distance from the bird colony. The two colony types promoted development of specific plant communities: the immediate vicinity of the planktivorous colony characterized by a Deschampsia alpina - Cerastium arcticum community while under the piscivorous colony a Cochlearia groenlandica-Poa alpina community was present. Despite the similar size of the colonies and similar magnitude of guano input, differences between ornithogenic communities were connected mostly to phosphate content in the soil. Our results show that the guano input from seabirds which have different diets can affect High Arctic vegetation in specific and more complex ways than previously realized.

Comparing hiking, mountain biking and horse riding impacts on vegetation and soils in Australia and the United States of America.

PubMed

Pickering, Catherine Marina; Hill, Wendy; Newsome, David; Leung, Yu-Fai

2010-01-01

Hiking, horse riding and mountain biking are popular in protected areas in Australia and the United States of America. To help inform the often contentious deliberations about use of protected areas for these three types of activities, we review recreation ecology research in both countries. Many impacts on vegetation, soils and trails are similar for the three activities, although there can be differences in severity. Impacts include damage to existing trails, soil erosion, compaction and nutrification, changes in hydrology, trail widening, exposure of roots, rocks and bedrock. There can be damage to plants including reduction in vegetation height and biomass, changes in species composition, creation of informal trails and the spread of weeds and plant pathogens. Due to differences in evolutionary history, impacts on soil and vegetation can be greater in Australia than in the USA. There are specific social and biophysical impacts of horses such as those associated with manure and urine, grazing and the construction and use of tethering yards and fences. Mountain bike specific impacts include soil and vegetation damage from skidding and the construction of unauthorised trails, jumps, bridges and other trail technical features. There are gaps in the current research that should be filled by additional research: (1) on horse and mountain bike impacts to complement those on hiking. The methods used need to reflect patterns of actual usage and be suitable for robust statistical analysis; (2) that directly compares types and severity of impacts among activities; and (3) on the potential for each activity to contribute to the spread of weeds and plant pathogens. Additional research will assist managers and users of protected areas in understanding the relative impacts of these activities, and better ways to manage them. It may not quell the debates among users, managers and conservationists, but it will help put it on a more scientific footing. 2009 Elsevier Ltd. All rights reserved.

Differential controls on soil carbon density and mineralization among contrasting forest types in a temperate forest ecosystem.

PubMed

You, Ye-Ming; Wang, Juan; Sun, Xiao-Lu; Tang, Zuo-Xin; Zhou, Zhi-Yong; Sun, Osbert Jianxin

2016-03-01

Understanding the controls on soil carbon dynamics is crucial for modeling responses of ecosystem carbon balance to global change, yet few studies provide explicit knowledge on the direct and indirect effects of forest stands on soil carbon via microbial processes. We investigated tree species, soil, and site factors in relation to soil carbon density and mineralization in a temperate forest of central China. We found that soil microbial biomass and community structure, extracellular enzyme activities, and most of the site factors studied varied significantly across contrasting forest types, and that the associations between activities of soil extracellular enzymes and microbial community structure appeared to be weak and inconsistent across forest types, implicating complex mechanisms in the microbial regulation of soil carbon metabolism in relation to tree species. Overall, variations in soil carbon density and mineralization are predominantly accounted for by shared effects of tree species, soil, microclimate, and microbial traits rather than the individual effects of the four categories of factors. Our findings point to differential controls on soil carbon density and mineralization among contrasting forest types and highlight the challenge to incorporate microbial processes for constraining soil carbon dynamics in global carbon cycle models.

Differential controls on soil carbon density and mineralization among contrasting forest types in a temperate forest ecosystem

PubMed Central

You, Ye-Ming; Wang, Juan; Sun, Xiao-Lu; Tang, Zuo-Xin; Zhou, Zhi-Yong; Sun, Osbert Jianxin

2016-01-01

Understanding the controls on soil carbon dynamics is crucial for modeling responses of ecosystem carbon balance to global change, yet few studies provide explicit knowledge on the direct and indirect effects of forest stands on soil carbon via microbial processes. We investigated tree species, soil, and site factors in relation to soil carbon density and mineralization in a temperate forest of central China. We found that soil microbial biomass and community structure, extracellular enzyme activities, and most of the site factors studied varied significantly across contrasting forest types, and that the associations between activities of soil extracellular enzymes and microbial community structure appeared to be weak and inconsistent across forest types, implicating complex mechanisms in the microbial regulation of soil carbon metabolism in relation to tree species. Overall, variations in soil carbon density and mineralization are predominantly accounted for by shared effects of tree species, soil, microclimate, and microbial traits rather than the individual effects of the four categories of factors. Our findings point to differential controls on soil carbon density and mineralization among contrasting forest types and highlight the challenge to incorporate microbial processes for constraining soil carbon dynamics in global carbon cycle models. PMID:26925871

Proteomic signatures differentiating Bacillus anthracis Sterne sporulation on soil relative to laboratory media.

PubMed

Wunschel, D S; Hutchison, J R; Deatherage Kaiser, B L; Merkley, E D; Hess, B M; Lin, A; Warner, M G

2017-12-18

The process of sporulation is vital for the stability and infectious cycle of Bacillus anthracis. The spore is the infectious form of the organism and therefore relevant to biodefense. While the morphological and molecular events occurring during sporulation have been well studied, the influence of growth medium and temperature on the proteins expressed in sporulated cultures is not well understood. Understanding the features of B. anthracis sporulation specific to natural vs. laboratory production will address an important question in microbial forensics. In an effort to bridge this knowledge gap, a system for sporulation on two types of agar-immobilized soils was used for comparison to cultures sporulated on two common types of solid laboratory media, and one liquid sporulation medium. The total number of proteins identified as well as their identity differed between samples generated in each medium and growth temperature, demonstrating that sporulation environment significantly impacts the protein content of the spore. In addition, a subset of proteins common in all of the soil-cultivated samples was distinct from the expression profiles in laboratory medium (and vice versa). These differences included proteins involved in thiamine and phosphate metabolism in the sporulated cultures produced on soils with a notable increase in expression of ATP binding cassette (ABC) transporters annotated to be for phosphate and antimicrobial peptides. A distinct set of ABC transporters for amino acids, sugars and oligopeptides were found in cultures produced on laboratory media as well as increases in carbon and amino acid metabolism-related proteins. These protein expression changes indicate that the sporulation environment impacts the protein profiles in specific ways that are reflected in the metabolic and membrane transporter proteins present in sporulated cultures.

Parental material and cultivation determine soil bacterial community structure and fertility.

PubMed

Sun, Li; Gao, Jusheng; Huang, Ting; Kendall, Joshua R A; Shen, Qirong; Zhang, Ruifu

2015-01-01

Microbes are the key components of the soil environment, playing important roles during soil development. Soil parent material provides the foundation elements that comprise the basic nutritional environment for the development of microbial community. After 30 years artificial maturation of cultivation, the soil developments of three different parental materials were evaluated and bacterial community compositions were investigated using the high-throughput sequencing approach. Thirty years of cultivation increased the soil fertility and soil microbial biomass, richness and diversity, greatly changed the soil bacterial communities, the proportion of phylum Actinobacteria decreased significantly, while the relative abundances of the phyla Acidobacteria, Chloroflexi, Gemmatimonadetes, Armatimonadetes and Nitrospira were significantly increased. Soil bacterial communities of parental materials were separated with the cultivated ones, and comparisons of different soil types, granite soil and quaternary red clay soil were similar and different with purple sandy shale soil in both parental materials and cultivated treatments. Bacterial community variations in the three soil types were affected by different factors, and their alteration patterns in the soil development also varied with soil type. Soil properties (except total potassium) had a significant effect on the soil bacterial communities in all three soil types and a close relationship with abundant bacterial phyla. The amounts of nitrogen-fixing bacteria as well as the abundances of the nifH gene in all cultivated soils were higher than those in the parental materials; Burkholderia and Rhizobacte were enriched significantly with long-term cultivation. The results suggested that crop system would not deplete the nutrients of soil parental materials in early stage of soil maturation, instead it increased soil fertility and changed bacterial community, specially enriched the nitrogen-fixing bacteria to accumulate nitrogen during soil development. © FEMS 2014. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Distinct Circular Single-Stranded DNA Viruses Exist in Different Soil Types

PubMed Central

Swanson, Maud M.; Dawson, Lorna; Freitag, Thomas E.; Singh, Brajesh K.; Torrance, Lesley; Mushegian, Arcady R.

2015-01-01

The potential dependence of virus populations on soil types was examined by electron microscopy, and the total abundance of virus particles in four soil types was similar to that previously observed in soil samples. The four soil types examined differed in the relative abundances of four morphological groups of viruses. Machair, a unique type of coastal soil in western Scotland and Ireland, differed from the others tested in having a higher proportion of tailed bacteriophages. The other soils examined contained predominantly spherical and thin filamentous virus particles, but the Machair soil had a more even distribution of the virus types. As the first step in looking at differences in populations in detail, virus sequences from Machair and brown earth (agricultural pasture) soils were examined by metagenomic sequencing after enriching for circular Rep-encoding single-stranded DNA (ssDNA) (CRESS-DNA) virus genomes. Sequences from the family Microviridae (icosahedral viruses mainly infecting bacteria) of CRESS-DNA viruses were predominant in both soils. Phylogenetic analysis of Microviridae major coat protein sequences from the Machair viruses showed that they spanned most of the diversity of the subfamily Gokushovirinae, whose members mainly infect obligate intracellular parasites. The brown earth soil had a higher proportion of sequences that matched the morphologically similar family Circoviridae in BLAST searches. However, analysis of putative replicase proteins that were similar to those of viruses in the Circoviridae showed that they are a novel clade of Circoviridae-related CRESS-DNA viruses distinct from known Circoviridae genera. Different soils have substantially different taxonomic biodiversities even within ssDNA viruses, which may be driven by physicochemical factors. PMID:25841004

Effect of soil type and moisture availability on the foraging behavior of the Formosan subterranean termite (Isoptera: Rhinotermitidae).

PubMed

Cornelius, Mary L; Osbrink, Weste L A

2010-06-01

This study examined the influence of soil type and moisture availability on termite foraging behavior. Physical properties of the soil affected both tunneling behavior and shelter tube construction. Termites tunneled through sand faster than top soil and clay. In containers with top soil and clay, termites built shelter tubes on the sides of the containers. In containers with sand, termites built shelter tubes directly into the air and covered the sides of the container with a layer of sand. The interaction of soil type and moisture availability affected termite movement, feeding, and survival. In assays with moist soils, termites were more likely to aggregate in top soil over potting soil and peat moss. However, termites were more likely to move into containers with dry peat moss and potting soil than containers with dry sand and clay. Termites were also significantly more likely to move into containers with dry potting soil than dry top soil. In the assay with dry soils, termite mortality was high even though termites were able to travel freely between moist sand and dry soil, possibly due to desiccation caused by contact with dry soil. Evaporation from potting soil and peat moss resulted in significant mortality, whereas termites were able to retain enough moisture in top soil, sand, and clay to survive for 25 d. The interaction of soil type and moisture availability influences the distribution of foraging termites in microhabitats.

Use of mobile gammaspectrometry for estimation of texture at regional scale

NASA Astrophysics Data System (ADS)

Dierke, C.; Werban, U.; Dietrich, P.

2012-04-01

In the last years gamma-ray measurements from air and ground were increasingly used for spatial mapping of physical soil parameters. Many applications of gamma-ray measurements for soil characterisation and in digital soil mapping (DSM) are known from Australia or single once from Northern America. During the last years there are attempts to use that method in Europe as well. The measured isotope concentration of the gamma emitter 40K, 238U and 232Th in soils depends on different soil parameters, which are the result of composition and properties of parent rock and processes during soil geneses under different climatic conditions. Grain size distribution, type of clay minerals and organic matter are soil parameters which influence directly the gamma-ray concentration. From former studies we know, that there are site specific relationships at the field scale between gamma-ray measurements and soil properties. One of the target soil properties in DSM is for e.g. the spatial distribution of texture at the landscape scale. Thus there is a need of more regional understanding of gamma-ray concentration and soil properties with regard to the complex geology of Europe. We did systematic measurements at different field sites across Europe to investigate the relationship between the concentrations of gamma radiant and grain size. The areas are characterised by different pedogenesis and varying clay content. For the measurement we used a mobile 4l Na(I) detector with GPS connection, which is mounted on a sledge and can be towed across the agricultural used plane. Additionally we selected points for soil sampling and analysis of soil texture. For the interpretation we used the single nuclide concentration as well as the ratios. The results show site specific relationships dependent from source material. At soils developed from alluvial sediments the K/Th ratio is an indicator for clay content at regional scale. At soils developed from loess sediments Th can be used do discriminate between fine (clay + silt) and coarse (sand) fraction. This knowledge will led to a more conceptual understanding of gamma-ray measurements at regional scale. These activities are done within the iSOIL project. iSOIL- Interactions between soil related sciences - Linking geophysics, soil science and digital soil mapping is a Collaborative Project (Grant Agreement number 211386) co-funded by the Research DG of the European Commission within the RTD activities of the FP7 Thematic Priority Environment; iSOIL is one member of the SOIL TECHNOLOGY CLUSTER of Research Projects funded by the EC.

Distribution and decline of human pathogenic bacteria in soil after application in irrigation water and the potential for soil-splash-mediated dispersal onto fresh produce.

PubMed

Monaghan, J M; Hutchison, M L

2012-05-01

To improve our understanding of the survival and splash-mediated transfer of zoonotic agents and faecal indicator bacteria introduced into soils used for crop cultivation via contaminated irrigation waters. Zoonotic agents and an Escherichia coli marker bacterium were inoculated into borehole water, which was applied to two different soil types in early-, mid- and late summer. Decline of the zoonotic agents was influenced by soil type. Marker bacteria applied to columns of two soil types in irrigation water did not concentrate at the surface of the soils. Decline of zoonotic agents at the surface was influenced by soil type and environmental conditions. Typically, declines were rapid and bacteria were not detectable after 5 weeks. Selective agar strips were used to determine that the impact of water drops 24-87 μl could splash marker bacteria from soil surfaces horizontal distances of at least 25 cm and heights of 20 cm. Soil splash created by rain-sized water droplets can transfer enteric bacteria from soil to ready-to-eat crops. Persistence of zoonotic agents was reduced at the hottest part of the growing season when irrigation is most likely. Soil splash can cause crop contamination. We report the penetration depths and seasonally influenced declines of bacteria applied in irrigation water into two soil types. © 2012 The Authors. Journal of Applied Microbiology © 2012 The Society for Applied Microbiology.

Impact of drying-rewetting events on the response of soil microbial functions to dairyfibre and Miscanthus biochars

NASA Astrophysics Data System (ADS)

Bonnett, Sam; Vink, Stefanie; Baker, Kate; Saghir, Muhammad; Hornung, Andreas

2014-05-01

Biochar application has been shown to positively affect soil microbial functions such as reducing greenhouse gas emissions, increasing water/nutrient availability and increasing crop yields in tropical regions (Lehmann & Joseph, 2009). Understanding the dynamics of biochar application to soil microbial processes is critical for ensuring that soil quality, integrity and sustainability of the soil sub-system are maintained for crop growth. The aim of this British Ecological Society (BES) funded study was to examine the effect of two types of biochar on soil physicochemistry, GHG production, soil enzyme activities and microbial biomass in typical agricultural soil types and whether the effects were altered by drying, rewetting and flooding events. Miscanthus and dairyfibre (a mixture of straw and manure) feedstocks from Harper Adams University were pyrolyzed by Aston University at 450 °C using 100 kg/hr pyroformer technology. Two sieved soil types (sandy loam and clay loam) were mixed with dry biochar to produce 2 and 10 % w/w treatments for comparison with controls and maintained at 15 °C in temperature controlled incubators. At 0, 22, 44, 80, 101, and 114 days, soil was collected for determination of heterotrophic respiration, and microbial biomass by substrate-induced respiration (SIR), by gas headspace incubation and analysis of carbon dioxide (CO2) and nitrous oxide (N2O) by gas chromatography. Soil was sampled for the determination of water-extractable carbon, pH, and extracellular enzyme activities. Soil samples were maintained at field gravimetric water content between 0 and 44 days; air dried between 44 and 80 days; rewetted between 80 and 101 days; and flooded between 101 to 114 days. Results showed that the impact of biochar on soil microbial processes was dependent on biochar type and soil type, the level of biochar application and changes in soil moisture. Biochar affected soil pH particularly within the dairyfibre treatments, potentially due to the dissolution of alkaline minerals, high ash content (Lehmann et al. 2011) and solubility of DOC. Biochar treatments buffered changes in pH caused by drying and flooding but resulted in an increase in DOC. Biochar in general stabilised glucosidase activity whilst Miscanthus biochar stimulated chitinase and phosphatase activity that may have been due to adsorption of either enzyme or substrate as observed by Bailey et al. (2011). Surprisingly, alkaline phosphatase activity was not stimulated by the rise in pH in the diaryfibre treatment and was lower than the control along with the other hydrolase enzymes suggesting that deprotonation of soil phenols at higher pH inhibited activity via the enzyme-latch mechanism that in peatlands explains low rates of decomposition (Freeman et al., 2001; Sinsabaugh et al. 2010). This was supported by observation of higher phenol oxidase activity within the dairyfibre treatment that increased in response to greater availability of substrate and/or increases in pH. All biochars inhibited the production of N2O that was stimulated by the supply of labile carbon from SIR, suggesting that biochar decreased C-substrate availability through adsorption at its surface (Clough and Condron, 2010). Overall, this study has shown that specific feedstocks may be used to produce biochars to control microbial functions in soil such as inhibiting hydrolase enzymes for carbon sequestration as occurs naturally in peatlands or suppress the production of the potent greenhouse gas N2O. References Bailey, V., Fansler, S.J., Smith, J.L. Bolton, H. (2011) Reconciling apparent variability in effects of biochar amendment on soil enzyme activities by assay optimization. Soil Biology and Biochemistry 43, 296-301. Clough, T. and Condron, L. (2010) Biochar and the nitrogen cycle: introduction. Journal of Environmental Quality, 39,1218-1223. Freeman, C., Ostle, N. and Kang, H. (2001) An enzymic 'latch' on a global carbon store. Nature 409, 149. Lehmann, J and Joseph, S (2009). Biochar for Environmental Management. Earthscan, London. Lehmann, J., Rillig, M.C., Thies, J., Masiello, C.A., Hockaday, W.C. and Crowley, D. (2011) Biochar effects on soil biota - A review. Soil Biology and Biochemistry 43, 1812-1836. Sinsabaugh, R.L. (2010) Phenol oxidase, peroxidase and organic matter dynamics of soil. Soil Biology and Biochemistry 42, 391-404.

Descendant root volume varies as a function of root type: estimation of root biomass lost during uprooting in Pinus pinaster.

PubMed

Danjon, Frédéric; Caplan, Joshua S; Fortin, Mathieu; Meredieu, Céline

2013-01-01

Root systems of woody plants generally display a strong relationship between the cross-sectional area or cross-sectional diameter (CSD) of a root and the dry weight of biomass (DWd) or root volume (Vd) that has grown (i.e., is descendent) from a point. Specification of this relationship allows one to quantify root architectural patterns and estimate the amount of material lost when root systems are extracted from the soil. However, specifications of this relationship generally do not account for the fact that root systems are comprised of multiple types of roots. We assessed whether the relationship between CSD and Vd varies as a function of root type. Additionally, we sought to identify a more accurate and time-efficient method for estimating missing root volume than is currently available. We used a database that described the 3D root architecture of Pinus pinaster root systems (5, 12, or 19 years) from a stand in southwest France. We determined the relationship between CSD and Vd for 10,000 root segments from intact root branches. Models were specified that did and did not account for root type. The relationships were then applied to the diameters of 11,000 broken root ends to estimate the volume of missing roots. CSD was nearly linearly related to the square root of Vd, but the slope of the curve varied greatly as a function of root type. Sinkers and deep roots tapered rapidly, as they were limited by available soil depth. Distal shallow roots tapered gradually, as they were less limited spatially. We estimated that younger trees lost an average of 17% of root volume when excavated, while older trees lost 4%. Missing volumes were smallest in the central parts of root systems and largest in distal shallow roots. The slopes of the curves for each root type are synthetic parameters that account for differentiation due to genetics, soil properties, or mechanical stimuli. Accounting for this differentiation is critical to estimating root loss accurately.

Descendant root volume varies as a function of root type: estimation of root biomass lost during uprooting in Pinus pinaster

PubMed Central

Danjon, Frédéric; Caplan, Joshua S.; Fortin, Mathieu; Meredieu, Céline

2013-01-01

Root systems of woody plants generally display a strong relationship between the cross-sectional area or cross-sectional diameter (CSD) of a root and the dry weight of biomass (DWd) or root volume (Vd) that has grown (i.e., is descendent) from a point. Specification of this relationship allows one to quantify root architectural patterns and estimate the amount of material lost when root systems are extracted from the soil. However, specifications of this relationship generally do not account for the fact that root systems are comprised of multiple types of roots. We assessed whether the relationship between CSD and Vd varies as a function of root type. Additionally, we sought to identify a more accurate and time-efficient method for estimating missing root volume than is currently available. We used a database that described the 3D root architecture of Pinus pinaster root systems (5, 12, or 19 years) from a stand in southwest France. We determined the relationship between CSD and Vd for 10,000 root segments from intact root branches. Models were specified that did and did not account for root type. The relationships were then applied to the diameters of 11,000 broken root ends to estimate the volume of missing roots. CSD was nearly linearly related to the square root of Vd, but the slope of the curve varied greatly as a function of root type. Sinkers and deep roots tapered rapidly, as they were limited by available soil depth. Distal shallow roots tapered gradually, as they were less limited spatially. We estimated that younger trees lost an average of 17% of root volume when excavated, while older trees lost 4%. Missing volumes were smallest in the central parts of root systems and largest in distal shallow roots. The slopes of the curves for each root type are synthetic parameters that account for differentiation due to genetics, soil properties, or mechanical stimuli. Accounting for this differentiation is critical to estimating root loss accurately. PMID:24167506

Synoptic and Mesoscale Climatologies of Severe Local Storms for the American Midwest.

NASA Astrophysics Data System (ADS)

Arnold, David Leslie

This study investigates the synoptic and mesoscale environments associated with severe local storms (SELS) in the heart of the American Midwest. This region includes west-central Illinois, most of Indiana, the extreme western counties of Ohio, and a small part of northeastern Kentucky. The primary objectives of this study are to determine the surface and middle-tropospheric synoptic circulation patterns and thermodynamic and kinematic environments associated with SELS event types (tornadoes, hail, severe straight -line winds), and to assess the degree to which the synoptic circulation patterns and meso-beta scale kinematic and thermodynamic climatology of the Midwest differ from that of the Great Plains. A secondary objective is to investigate the possible role that land-surface atmosphere interactions play in the spatial distribution of SELS. A new subjective synoptic typing scheme is developed and applied to determine the synoptic-scale circulation patterns associated with the occurrence of SELS event types. This scheme is based on a combination of surface and middle -tropospheric patterns. Thermodynamic and kinematic parameters are analyzed to determine meso-scale environments favorable for the development of SELS. Results indicate that key synoptic-scale circulation patterns, and specific ranges of thermodynamic and kinematic parameters are related to specific SELS event types. These circulation types and ranges of thermodynamic and kinematic parameters may be used to help improve the medium-range forecasting of severe local storms. Results of the secondary objective reveal that the spatial distribution of SELS events is clustered within the study region, and most occur under a negative climate division-level soil moisture gradient; that is, a drier upwind division than the division in which the event occurs. Moreover, the spatial distribution of SELS events is compared against a map of soil types and vegetation. The resulting distribution depicts a visual correlation between the primary soil and vegetative boundaries and clusters of SELS. This supports the likely role of meso-scale land-surface-atmosphere interactions in severe weather development for humid lowlands of the Midwest United States.

Including spatial data in nutrient balance modelling on dairy farms

NASA Astrophysics Data System (ADS)

van Leeuwen, Maricke; van Middelaar, Corina; Stoof, Cathelijne; Oenema, Jouke; Stoorvogel, Jetse; de Boer, Imke

2017-04-01

The Annual Nutrient Cycle Assessment (ANCA) calculates the nitrogen (N) and phosphorus (P) balance at a dairy farm, while taking into account the subsequent nutrient cycles of the herd, manure, soil and crop components. Since January 2016, Dutch dairy farmers are required to use ANCA in order to increase understanding of nutrient flows and to minimize nutrient losses to the environment. A nutrient balance calculates the difference between nutrient inputs and outputs. Nutrients enter the farm via purchased feed, fertilizers, deposition and fixation by legumes (nitrogen), and leave the farm via milk, livestock, manure, and roughages. A positive balance indicates to which extent N and/or P are lost to the environment via gaseous emissions (N), leaching, run-off and accumulation in soil. A negative balance indicates that N and/or P are depleted from soil. ANCA was designed to calculate average nutrient flows on farm level (for the herd, manure, soil and crop components). ANCA was not designed to perform calculations of nutrient flows at the field level, as it uses averaged nutrient inputs and outputs across all fields, and it does not include field specific soil characteristics. Land management decisions, however, such as the level of N and P application, are typically taken at the field level given the specific crop and soil characteristics. Therefore the information that ANCA provides is likely not sufficient to support farmers' decisions on land management to minimize nutrient losses to the environment. This is particularly a problem when land management and soils vary between fields. For an accurate estimate of nutrient flows in a given farming system that can be used to optimize land management, the spatial scale of nutrient inputs and outputs (and thus the effect of land management and soil variation) could be essential. Our aim was to determine the effect of the spatial scale of nutrient inputs and outputs on modelled nutrient flows and nutrient use efficiencies at Dutch dairy farms. We selected two dairy farms located on cover sands in the Netherlands. One farm was located on relatively homogeneous soil type, and one on many different soil types within the sandy soils. A full year of data of N and P inputs and outputs on farm and field level were provided by the farmers, including field level yields, yield composition, manure composition, degree of grazing and degree of mowing. Soil heterogeneity was defined as the number of soil units within the farm corrected for surface area, and quantified from the Dutch 1:50.000 soil map. N and P balances at farm and field level were determined, as well as differences in nutrient use efficiency, leaching, and N emission. We will present the effect of the spatial scale on nutrient balance analysis and discuss to which degree any differences are caused by within-farm land management and soil variation. This study highlights to which extent within-farm land management and soil variation should be taken into account when modelling nutrient flows and nutrient use efficiencies at farm level, to contribute to field-based decision making for improved land management.

Insights into soil carbon dynamics across climatic and geologic gradients from time-series and fraction-specific radiocarbon analysis

NASA Astrophysics Data System (ADS)

van der Voort, Tessa Sophia; Hagedorn, Frank; Zell, Claudia; McIntyre, Cameron; Eglinton, Tim

2016-04-01

Understanding the interaction between soil organic matter (SOM) and climatic, geologic and ecological factors is essential for the understanding of potential susceptibility and vulnerability to climate and land use change. Radiocarbon constitutes a powerful tool for unraveling SOM dynamics and is increasingly used in studies of carbon turnover. The complex and inherently heterogeneous nature of SOM renders it challenging to assess the processes that govern SOM stability by solely looking at the bulk signature on a plot-scale level. This project combines bulk radiocarbon measurements on a regional-scale spanning wide climatic and geologic gradients with a more in-depth approach for a subset of locations. For this subset, time-series and carbon pool-specific radiocarbon data has been acquired for both topsoil and deeper soils. These well-studied sites are part of the Long-Term Forest Ecosystem Research (LWF) program of the Swiss Federal Institute for Forest, Snow and Landscape research (WSL). Statistical analysis was performed to examine relationships of radiocarbon signatures with variables such as temperature, precipitation and elevation. Bomb-curve modeling was applied determine carbon turnover using time-series data. Results indicate that (1) there is no significant correlation between Δ14C signature and environmental conditions except a weak positive correlation with mean annual temperature, (2) vertical gradients in Δ14C signatures in surface and deeper soils are highly similar despite covering disparate soil-types and climatic systems, and (3) radiocarbon signatures vary significantly between time-series samples and carbon pools. Overall, this study provides a uniquely comprehensive dataset that allows for a better understanding of links between carbon dynamics and environmental settings, as well as for pool-specific and long-term trends in carbon (de)stabilization.

Microbial composition in microcosms amended with natural and mineral fertilizers under different water regimes

NASA Astrophysics Data System (ADS)

Brad, Traian; Chiriac, Cecilia; Szekeres, Edina; Coman, Cristian; Rudi, Knut; Sandor, Mignon

2017-04-01

Twenty microcosm enclosures containing two types of soil (i.e. a rich Chernozemic and a poorer soil) were fertilized with mineral (NPK-complex) and organic (Gülle, manure and a green fertilizer) materials and placed under dry and wet water regimes. After 10, 20 and 30 days of the experiment, soil samples were analyzed for the structure and composition of microbial communities using next generation sequencing techniques (Illumina) and statistical analysis. The differences between bacteria communities in different soil types, and in different fertilization and hydric treatments were analyzed using quantitative phylogenetic distances and the ANOSIM test. The two types of soil especially selected for the structure of microbial communities, while moisture and the type of fertilizer appeared to have a smaller influence on microbial diversity in microcosms. The alpha-diversity indices (species richness, evenness and phylogenetic diversity) had higher values for the poorer soil compared to the rich Chernozemic soil. For both soil types, the highest bacteria diversity values were obtained after fertilization with manure. The microbial communities in the analyzed soils were complex and dominated by sequences belonging to Actinobacteria, Proteobacteria, Acidobacteria and Firmicutes.

Soil quality succession of mudflat in coastal area of China under different types of man-made land uses

NASA Astrophysics Data System (ADS)

Lu, Haiying; Shao, Hongbo; Xu, Zhaolong; Peng, Cheng

2017-04-01

Marshy reclamation in coastal area is becoming an important strategy for food safety security and economic development in China. After the reclamation of mudflat, the nutrient concentration in soil is one of the dominated factors restricting the development of marshy agriculture. However, little information is available for soil nutrient dynamics and its driving mechanisms under different types of man-made land uses. In this review, we summarized the soil nutrient dynamics under different types of man-made land uses (bare mudflat soil, rice-wheat rotation soil, aquaculture soil, and forest soil), including the change of physical and chemical features of the reclaimed soil; ii) the dynamics of soil organic matters and its driving mechanism in marshy land; iii) the migration of N, P, and K in marshy soil; and iv) the oriented cultivation and improvement for soil nutrient in marshy soil. This study contributes not only to understanding the soil nutrient cycling in marshy land, but also to providing valuable information for the sustainable development of salt-soil agriculture in marshy land along seaside cities of China.

[Prediction of regional soil quality based on mutual information theory integrated with decision tree algorithm].

PubMed

Lin, Fen-Fang; Wang, Ke; Yang, Ning; Yan, Shi-Guang; Zheng, Xin-Yu

2012-02-01

In this paper, some main factors such as soil type, land use pattern, lithology type, topography, road, and industry type that affect soil quality were used to precisely obtain the spatial distribution characteristics of regional soil quality, mutual information theory was adopted to select the main environmental factors, and decision tree algorithm See 5.0 was applied to predict the grade of regional soil quality. The main factors affecting regional soil quality were soil type, land use, lithology type, distance to town, distance to water area, altitude, distance to road, and distance to industrial land. The prediction accuracy of the decision tree model with the variables selected by mutual information was obviously higher than that of the model with all variables, and, for the former model, whether of decision tree or of decision rule, its prediction accuracy was all higher than 80%. Based on the continuous and categorical data, the method of mutual information theory integrated with decision tree could not only reduce the number of input parameters for decision tree algorithm, but also predict and assess regional soil quality effectively.

Plant mycorrhizal traits and carbon fates from plot to globe

NASA Astrophysics Data System (ADS)

Soudzilovskaia, N.; Cornelissen, H. H. C.

2016-12-01

Evidence is accumulating that plant traits related to mycorrhizal symbiosis, i.e. mycorrhizal type and the degree of plant root colonization by mycorrhizal fungi have important consequences for carbon pools and allocation in plants and soil. How plant and soil carbon pools vary among vegetation dominated by plants of different mycorrhizal types is a new and exciting research challenge. Absence of global databases on abundance of mycorrhizal fungi in soil and plant roots retards research aimed to understand involvement of mycorrhizas into soil carbon transformation processes. Using own data and published studies we have assembled currently world-largest database of plant species-per-site degrees root colonization by two most common types of mycorrhizal fungi, arbuscular mycorrhizal (AM) and ectomycorrhizal (EM). The database features records for plant root colonization degrees by AM and EM (above 8000 records in total). Using this database, we demonstrate that the degree of mycorrhizal fungal colonization has globally consistent patterns across plant species. This suggests that the level of plant species-specific root colonization can be used as a plant trait. I will discuss how combining plot-level field data, literature data and mycorrhizal infection trait data may help us to quantify the carbon consequences of relative dominance by arbuscular versus ectomycorrhizal symbiosis in vegetation from plot to global scale. To exemplify this method, I will present an assessment of the impacts of EM shrub encroachment on carbon stocks in sub-arctic tundra, and show how the plant trait data (root, leaf, stem and mycorrhizal colonization traits) could predict (1) impacts of AM and EM vegetation on soil carbon budget and (2) changes in soil carbon budget due to increase of EM plants in an AM-dominated ecosystem and visa versa. This approach may help to predict how global change-mediated vegetation shifts, via mycorrhizal carbon pools and dynamics, may affect terrestric and (thereby) atmospheric carbon.

A case study on the method-induced difference in the chemical properties and biodegradability of soil water extractable organic carbon of a granitic forest soil.

PubMed

Wu, Yue; Jiang, Ying

2016-09-15

Water extractable organic carbon (WEOC) plays important roles in soil dissolved organic matter (DOM) research. In the present study, we have detected the chemical properties and biodegradability of WEOC obtained from one granitic forest soil with four commonly used or suggested extraction methods, to study the potential methodological influence in soil DOM research. Results showed great difference in both chemical properties and biodegradation of WEOC from various methods. For the chosen soil, compared to that from fresh soil, WEOC from dried soil contained large proportion of HIN, Base fractions and labile O-alkyl components which might be derived from microbial cell lysis, and showed low fluorescence characteristics, exhibiting great biodegradability. Similarly, WEOC extracted under low temperature and short time conditions showed low fluorescence characteristics and exhibited considerable biodegradability. Conversely, WEOC, which might be potentially subjected to decomposition and loss during extraction, contained higher percentages of HOA fractions and aromatic alkyl and aryl components, and showed high fluorescence characteristics, exhibiting low biodegradability. WEOC extracted in moderate time and temperature showed moderate biodegradability. These method-induced differences implied the direct comparison of the results from similar works is difficult, as we considered here a specific forest soil and other authors other soil types and uses. However, the complexity in comparison reminds that the methodological influence be paid more attention in future soil WEOC researches. Copyright © 2016 Elsevier B.V. All rights reserved.

Soil carbon sequestration and land use change associated with biofuel production: Empirical evidence

DOE Office of Scientific and Technical Information (OSTI.GOV)

Qin, Zhangcai; Dunn, Jennifer B.; Kwon, Hoyoung

Soil organic carbon (SOC) change can be a major impact of land use change (LUC) associated with biofuel feedstock production. By collecting and analyzing data from worldwide field observations with major LUCs from cropland, grassland and forest to lands producing biofuel crops (i.e., corn, switchgrass, Miscanthus, poplar and willow), we were able to estimate SOC response ratios and sequestration rates and evaluate the effects of soil depth and time scale on SOC change. Both the amount and rate of SOC change were highly dependent on the specific land transition. Irrespective of soil depth or time horizon, cropland conversions resulted inmore » an overall SOC gain of 6-14% relative to initial SOC level, while conversion from grassland or forest to corn (without residue removal) or poplar caused significant carbon loss (9-35%). No significant SOC changes were observed in land converted from grasslands or forests to switchgrass, Miscanthus or willow. The SOC response ratios were similar in both 0-30 and 0-100 cm soil depths in most cases, suggesting SOC changes in deep soil and that use of top soil only for SOC accounting in biofuel life cycle analysis (LCA) might underestimate total SOC changes. Soil carbon sequestration rates varied greatly among studies and land transition types. Generally, the rates of SOC change tended to be the greatest during the 10 years following land conversion, and had declined to approach 0 within about 20 years for most LUCs. Observed trends in SOC change were generally consistent with previous reports. Soil depth and duration of study significantly influence SOC change rates and so should be considered in carbon emission accounting in biofuel LCA. High uncertainty remains for many perennial systems, field trials and modeling efforts are needed to determine the site- and system-specific rates and direction of change associated with their production.« less

Vegetation Response to Rainfall and Soil Moisture Variability in Botswana

DTIC Science & Technology

1991-01-01

Effects of Varying Soil Type on the NDVI /Rainfall and NDVI /Soil Moisture...examine the effects of different soil types on the vegetation growth/rainfall relationship. The goals are to determine whether differences in the water-use...34first step" in removing the soil effect (Huete et al., 1985). Indeed, no large-scale soil corrections have been attempted as yet on NDVI data.

Assessment of potential soil degradation on agricultural land in the czech republic.

PubMed

Šarapatka, Bořivoj; Bednář, Marek

2015-01-01

Many attempts have been made worldwide to develop methods to identify the areas most threatened by soil degradation. Some soils in afflicted areas may be irreversibly degraded and thus have very little resilience (the ability to restore themselves). For the purpose of assessing the current state of soil degradation in the Czech Republic (CZ) we have developed an overall indicator of land vulnerability to the threat of soil degradation on the basis of individual factors that contribute to soil degradation and are monitored on a long-term basis in various research worksites in the CZ. Individual degradation factors were divided into two groups: chemical and physical degradation. On the basis of principal component analysis, individual degradation factors were assigned a specific weight of influence. With the use of a GIS, the input factors of degradation were combined to create maps of chemical and physical soil degradation, and consequently a map of overall degradation-threatened soils for the CZ, along with a map of areas differentiated according to the prevailing type of degradation. Results showed that, at present, the most important degradation factor in the CZ is water erosion, followed by loss of organic matter. Statistical analysis showed that approximately 51% of agricultural land is moderately threatened in the CZ. Copyright © by the American Society of Agronomy, Crop Science Society of America, and Soil Science Society of America, Inc.

Role of Subsurface Physics in the Assimilation of Surface Soil Moisture Observations

NASA Technical Reports Server (NTRS)

Reichle, R. H.

2010-01-01

Root zone soil moisture controls the land-atmosphere exchange of water and energy and exhibits memory that may be useful for climate prediction at monthly scales. Assimilation of satellite-based surface soil moisture observations into a land surface model is an effective way to estimate large-scale root zone soil moisture. The propagation of surface information into deeper soil layers depends on the model-specific representation of subsurface physics that is used in the assimilation system. In a suite of experiments we assimilate synthetic surface soil moisture observations into four different models (Catchment, Mosaic, Noah and CLM) using the Ensemble Kalman Filter. We demonstrate that identical twin experiments significantly overestimate the information that can be obtained from the assimilation of surface soil moisture observations. The second key result indicates that the potential of surface soil moisture assimilation to improve root zone information is higher when the surface to root zone coupling is stronger. Our experiments also suggest that (faced with unknown true subsurface physics) overestimating surface to root zone coupling in the assimilation system provides more robust skill improvements in the root zone compared with underestimating the coupling. When CLM is excluded from the analysis, the skill improvements from using models with different vertical coupling strengths are comparable for different subsurface truths. Finally, the skill improvements through assimilation were found to be sensitive to the regional climate and soil types.

Some aspects of remediation of contaminated soils

NASA Astrophysics Data System (ADS)

Bech, Jaume; Korobova, Elena; Abreu, Manuela; Bini, Claudio; Chon, Hyo-Taek; Pérez-Sirvent, Carmen; Roca, Núria

2014-05-01

Soils are essential components of the environment, a limited precious and fragile resource, the quality of which should be preserved. The concentration, chemical form and distribution of potential harmful elements in soils depends on parent rocks, weathering, soil type and soil use. However, their concentration can be altered by mismanagement of industrial and mining activities, energy generation, traffic increase, overuse of agrochemicals, sewage sludge and waste disposal, causing contamination, environmental problems and health concerns. Heavy metals, some metalloids and radionuclides are persistent in the environment. This persistence hampers the cost/efficiency of remediation technologies. The choice of the most appropriate soil remediation techniques depends of many factors and essentially of the specific site. This contribution aims to offer an overview of the main remediation methods in contaminated soils. There are two main groups of technologies: the first group dealing with containment and confinement, minimizing their toxicity, mobility and bioavailability. Containment measures include covering, sealing, encapsulation and immobilization and stabilization. The second group, remediation with decontamination, is based on the remotion, clean up and/or destruction of contaminants. This group includes mechanical procedures, physical separations, chemical technologies such as soil washing with leaching or precipitation of harmful elements, soil flushing, thermal treatments and electrokinetic technologies. There are also two approaches of biological nature: bioremediation and phytoremediation. Case studies from Chile, Ecuador, Italy, Korea, Peru, Portugal, Russia and Spain, will be discussed in accordance with the time available.

A web-based spatial decision supporting system (S-DSS) for grapevine quality: the viticultural tool of the SOILCONS-WEB Project

NASA Astrophysics Data System (ADS)

Manna, Piero; Bonfante, Antonello; Basile, Angelo; Langella, Giuliano; Agrillo, Antonietta; De Mascellis, Roberto; Florindo Mileti, Antonio; Minieri, Luciana; Orefice, Nadia; Terribile, Fabio

2014-05-01

The SOILCONSWEB Project aims to create a decision support system operating at the landscape scale (Spatial-DSS) for the protection and the management of soils in both agricultural and environmental issues; it is a cyber-infrastructure built on remote servers operating through the web at www.landconsultingweb.eu. It includes - among others - a series of tools specifically designed to a Viticulture aiming at high quality wines production. The system is realized thanks to a collaboration between the University of Naples Federico II, CNR ISAFoM, Ariespace srl and SeSIRCA-Campania Region within a 5-years LIFE+ project funded by European Community. The system includes tools based on modelling procedures at different level of complexity some of which specifically designed for viticulture issues. One of the implemented models arise from the original desktop based SWAP model (Kroes et al, 2008). It can be run "on the fly" through a very user friendly web-interface. The specific tool, thanks to the model based on the Richard's equation can produce data on vineyard water stress, simulating the soil water balances of the different soil types within an area of interest. Thanks to a specific program developed within the project activities, the Spatial-DSS every day acquires punctual weather data and automatically spatialize them with geostatistical approaches in order to use the data as input for the SPA (Soil Plant Atmosphere ) model running. In particular for defining the upper boundary condition (rainfall and temperatures to estimate ET0 by the Hargraves model). Soil hydraulic properties (47 soil profiles within the study area), also essential for modelling simulation, were measured in laboratory using the Wind's approach or estimated through HYPRES PTF. Water retention and hydraulic conductivity relationships were parameterized according to the van Genuchten-Mualem model; Decision makers (individuals, groups of interests and public bodies) through the DSS can have real-time (or near real-time) access to critical, accurate, complete and up-to-date spatial data/output models held/processed in multiple data stores. The system allows the users interested in viticulture to have free, easy and immediate access to a number of environmental data and information very useful for quality wines production and especially for viticulture planning and management in a context of environmental sustainability. It produces detailed spatial documents, report and maps on a series of questions including the identification and description of terroir characteristics. The user once connected to the S-DSS can select an area of interest (i.e. farm, municipality, district) or draw it and obtain in real time a series of detailed information regarding that specific area, including maps and reports of landscape physical factors (i.e. soils, climate, geology, geomorphology, etc.), viticulture suitability, plant disease data and modelling, trends of viticulture years, bioclimatic indexes, etc. The user can also choose between different options such as the time period of the simulation runs or the type of data (maps, report or graphs) to be produced by the system. The S-DSS is being developed, tested and applied in an area of about 20,000 ha in south of Italy (Valle Telesina, in Campania region) mainly vocated to quality wines production (designation of origin DOC and DOCG). Key words: Decision Support System, spatial data, model simulation, soil hydrological properties, cyber infrastructure.

Mapping specific soil functions based on digital soil property maps

NASA Astrophysics Data System (ADS)

Pásztor, László; Fodor, Nándor; Farkas-Iványi, Kinga; Szabó, József; Bakacsi, Zsófia; Koós, Sándor

2016-04-01

Quantification of soil functions and services is a great challenge in itself even if the spatial relevance is supposed to be identified and regionalized. Proxies and indicators are widely used in ecosystem service mapping. Soil services could also be approximated by elementary soil features. One solution is the association of soil types with services as basic principle. Soil property maps however provide quantified spatial information, which could be utilized more versatilely for the spatial inference of soil functions and services. In the frame of the activities referred as "Digital, Optimized, Soil Related Maps and Information in Hungary" (DOSoReMI.hu) numerous soil property maps have been compiled so far with proper DSM techniques partly according to GSM.net specifications, partly by slightly or more strictly changing some of its predefined parameters (depth intervals, pixel size, property etc.). The elaborated maps have been further utilized, since even DOSoReMI.hu was intended to take steps toward the regionalization of higher level soil information (secondary properties, functions, services). In the meantime the recently started AGRAGIS project requested spatial soil related information in order to estimate agri-environmental related impacts of climate change and support the associated vulnerability assessment. One of the most vulnerable services of soils in the context of climate change is their provisioning service. In our work it was approximated by productivity, which was estimated by a sequential scenario based crop modelling. It took into consideration long term (50 years) time series of both measured and predicted climatic parameters as well as accounted for the potential differences in agricultural practice and crop production. The flexible parametrization and multiple results of modelling was then applied for the spatial assessment of sensitivity, vulnerability, exposure and adaptive capacity of soils in the context of the forecasted changes in climatic conditions in the Carpathian Basin. In addition to soil fertility, degradation risk due to N-leaching was also assessed by the model runs by taking into account the movement of nitrate in the profile during the simulated periods. Our paper will present the resulted national maps and some conclusions drawn from the experiences. Acknowledgement: Our work was supported by Iceland, Liechtenstein and Norway through the EEA Grants and the REC (Project No: EEA C12-12) and the Hungarian National Scientific Research Foundation (OTKA, Grant No. K105167).

Model-based surface soil moisture (SSM) retrieval algorithm using multi-temporal RISAT-1 C-band SAR data

NASA Astrophysics Data System (ADS)

Pandey, Dharmendra K.; Maity, Saroj; Bhattacharya, Bimal; Misra, Arundhati

2016-05-01

Accurate measurement of surface soil moisture of bare and vegetation covered soil over agricultural field and monitoring the changes in surface soil moisture is vital for estimation for managing and mitigating risk to agricultural crop, which requires information and knowledge to assess risk potential and implement risk reduction strategies and deliver essential responses. The empirical and semi-empirical model-based soil moisture inversion approach developed in the past are either sensor or region specific, vegetation type specific or have limited validity range, and have limited scope to explain physical scattering processes. Hence, there is need for more robust, physical polarimetric radar backscatter model-based retrieval methods, which are sensor and location independent and have wide range of validity over soil properties. In the present study, Integral Equation Model (IEM) and Vector Radiative Transfer (VRT) model were used to simulate averaged backscatter coefficients in various soil moisture (dry, moist and wet soil), soil roughness (smooth to very rough) and crop conditions (low to high vegetation water contents) over selected regions of Gujarat state of India and the results were compared with multi-temporal Radar Imaging Satellite-1 (RISAT-1) C-band Synthetic Aperture Radar (SAR) data in σ°HH and σ°HV polarizations, in sync with on field measured soil and crop conditions. High correlations were observed between RISAT-1 HH and HV with model simulated σ°HH & σ°HV based on field measured soil with the coefficient of determination R2 varying from 0.84 to 0.77 and RMSE varying from 0.94 dB to 2.1 dB for bare soil. Whereas in case of winter wheat crop, coefficient of determination R2 varying from 0.84 to 0.79 and RMSE varying from 0.87 dB to 1.34 dB, corresponding to with vegetation water content values up to 3.4 kg/m2. Artificial Neural Network (ANN) methods were adopted for model-based soil moisture inversion. The training datasets for the NNs were obtained from theoretical forward-scattering models with controlled parameters, thus allowing the control of wide range of soil and crop parameters with which the network was trained. A preliminary performance analysis showed good results with estimation of soil moisture with RMSE better than 6%.

Key parameters in testing biodegradation of bio-based materials in soil.

PubMed

Briassoulis, D; Mistriotis, A

2018-09-01

Biodegradation of plastics in soil is currently tested by international standard testing methods (e.g. ISO 17556-12 or ASTM D5988-12). Although these testing methods have been developed for plastics, it has been shown in project KBBPPS that they can be extended also to lubricants with small modifications. Reproducibility is a critical issue regarding biodegradation tests in the laboratory. Among the main testing variables are the soil types and nutrients available (mainly nitrogen). For this reason, the effect of the soil type on the biodegradation rates of various bio-based materials (cellulose and lubricants) was tested for five different natural soil types (loam, loamy sand, clay, clay-loam, and silt-loam organic). It was shown that use of samples containing 1 g of C in a substrate of 300 g of soil with the addition of 0.1 g of N as nutrient strongly improves the reproducibility of the test making the results practically independent of the soil type with the exception of the organic soil. The sandy soil was found to need addition of higher amount of nutrients to exhibit similar biodegradation rates as those achieved with the other soil types. Therefore, natural soils can be used for Standard biodegradation tests of bio-based materials yielding reproducible results with the addition of appropriate nutrients. Copyright © 2018 Elsevier Ltd. All rights reserved.

[Variation of soil organic carbon under different vegetation types in Karst Mountain areas of Guizhou Province, southwest China].

PubMed

Liao, Hong-kai; Long, Jian

2011-09-01

This paper studied the variation characteristics of soil organic carbon (SOC) and different particle sizes soil particulate organic carbon (POC) in normal soil and in micro-habitats under different vegetation types in typical Karst mountain areas of southwest Guizhou. Under different vegetation types, the SOC content in normal soil and in micro-habitats was all in the order of bare land < grass < shrub < forest, with the variation range being 7.18-43.42 g x kg(-1) in normal soil and being 6.62-46.47 g x kg(-1) and 9.01-52.07 g x kg(-1) in earth surface and stone pit, respectively. The POC/MOC (mineral-associated organic carbon) ratio under different vegetation types was in the order of bare land < grass < forest < shrub. Under the same vegetation types, the POC/MOC in stone pit was the highest, as compared to that in normal soil and in earth surface. In the process of bare land-grass-shrub-forest, the contents of different particle sizes soil POC increased, while the SOC mainly existed in the forms of sand- and silt organic carbon, indicating that in Karst region, soil carbon sequestration and SOC stability were weak, soil was easily subjected to outside interference and led to organic carbon running off, and thus, soil quality had the risk of decline or degradation.

Quantitative analyses of ammonia-oxidizing archaea (AOA) and ammonia-oxidizing bacteria (AOB) in fields with different soil types.

PubMed

Morimoto, Sho; Hayatsu, Masahito; Takada Hoshino, Yuko; Nagaoka, Kazunari; Yamazaki, Masatsugu; Karasawa, Toshihiko; Takenaka, Makoto; Akiyama, Hiroko

2011-01-01

Soil type is one of the key factors affecting soil microbial communities. With regard to ammonia-oxidizing archaea (AOA) and ammonia-oxidizing bacteria (AOB), however, it has not been determined how soil type affects their community size and soil nitrification activity. Here we quantitatively analyzed the ammonia monooxygenase genes (amoA) of these ammonia oxidizers in fields with three different soil types (Low-humic Andosol [LHA], Gray Lowland Soil [GLS], and Yellow Soil [YS]) under common cropping conditions, and assessed the relationships between soil nitrification activity and the abundance of each amoA. Nitrification activity of LHA was highest, followed by that of GLS and YS; this order was consistent with that for the abundance of AOB amoA. Abundance of AOB amoA showed temporal variation, which was similar to that observed in nitrification activity, and a strong relationship (adjusted R(2)=0.742) was observed between the abundance of AOB amoA and nitrification activity. Abundance of AOA amoA also exhibited a significant relationship (adjusted R(2)=0.228) with nitrification activity, although this relationship was much weaker. Our results indicate that soil type affects the community size of AOA and AOB and the resulting nitrification activity, and that AOB are major contributors to nitrification in soils, while AOA are partially responsible.

Incorporation of satellite remote sensing pan-sharpened imagery into digital soil prediction and mapping models to characterize soil property variability in small agricultural fields

NASA Astrophysics Data System (ADS)

Xu, Yiming; Smith, Scot E.; Grunwald, Sabine; Abd-Elrahman, Amr; Wani, Suhas P.

2017-01-01

Soil prediction models based on spectral indices from some multispectral images are too coarse to characterize spatial pattern of soil properties in small and heterogeneous agricultural lands. Image pan-sharpening has seldom been utilized in Digital Soil Mapping research before. This research aimed to analyze the effects of pan-sharpened (PAN) remote sensing spectral indices on soil prediction models in smallholder farm settings. This research fused the panchromatic band and multispectral (MS) bands of WorldView-2, GeoEye-1, and Landsat 8 images in a village in Southern India by Brovey, Gram-Schmidt and Intensity-Hue-Saturation methods. Random Forest was utilized to develop soil total nitrogen (TN) and soil exchangeable potassium (Kex) prediction models by incorporating multiple spectral indices from the PAN and MS images. Overall, our results showed that PAN remote sensing spectral indices have similar spectral characteristics with soil TN and Kex as MS remote sensing spectral indices. There is no soil prediction model incorporating the specific type of pan-sharpened spectral indices always had the strongest prediction capability of soil TN and Kex. The incorporation of pan-sharpened remote sensing spectral data not only increased the spatial resolution of the soil prediction maps, but also enhanced the prediction accuracy of soil prediction models. Small farms with limited footprint, fragmented ownership and diverse crop cycle should benefit greatly from the pan-sharpened high spatial resolution imagery for soil property mapping. Our results show that multiple high and medium resolution images can be used to map soil properties suggesting the possibility of an improvement in the maps' update frequency. Additionally, the results should benefit the large agricultural community through the reduction of routine soil sampling cost and improved prediction accuracy.

Spatio-temporal Root Zone Soil Moisture Estimation for Indo - Gangetic Basin from Satellite Derived (AMSR-2 and SMOS) Surface Soil Moisture

NASA Astrophysics Data System (ADS)

Sure, A.; Dikshit, O.

2017-12-01

Root zone soil moisture (RZSM) is an important element in hydrology and agriculture. The estimation of RZSM provides insight in selecting the appropriate crops for specific soil conditions (soil type, bulk density, etc.). RZSM governs various vadose zone phenomena and subsequently affects the groundwater processes. With various satellite sensors dedicated to estimating surface soil moisture at different spatial and temporal resolutions, estimation of soil moisture at root zone level for Indo - Gangetic basin which inherits complex heterogeneous environment, is quite challenging. This study aims at estimating RZSM and understand its variation at the level of Indo - Gangetic basin with changing land use/land cover, topography, crop cycles, soil properties, temperature and precipitation patterns using two satellite derived soil moisture datasets operating at distinct frequencies with different principles of acquisition. Two surface soil moisture datasets are derived from AMSR-2 (6.9 GHz - `C' Band) and SMOS (1.4 GHz - `L' band) passive microwave sensors with coarse spatial resolution. The Soil Water Index (SWI), accounting for soil moisture from the surface, is derived by considering a theoretical two-layered water balance model and contributes in ascertaining soil moisture at the vadose zone. This index is evaluated against the widely used modelled soil moisture dataset of GLDAS - NOAH, version 2.1. This research enhances the domain of utilising the modelled soil moisture dataset, wherever the ground dataset is unavailable. The coupling between the surface soil moisture and RZSM is analysed for two years (2015-16), by defining a parameter T, the characteristic time length. The study demonstrates that deriving an optimal value of T for estimating SWI at a certain location is a function of various factors such as land, meteorological, and agricultural characteristics.

Fungal community composition in soils subjected to long-term chemical fertilization is most influenced by the type of organic matter.

PubMed

Sun, Ruibo; Dsouza, Melissa; Gilbert, Jack A; Guo, Xisheng; Wang, Daozhong; Guo, Zhibin; Ni, Yingying; Chu, Haiyan

2016-12-01

Organic matter application is a widely used practice to increase soil carbon content and maintain soil fertility. However, little is known about the effect of different types of organic matter, or the input of exogenous species from these materials, on soil fungal communities. In this study, fungal community composition was characterized from soils amended with three types of organic matter over a 30-year fertilization experiment. Chemical fertilization significantly changed soil fungal community composition and structure, which was exacerbated by the addition of organic matter, with the direction of change influenced by the type of organic matter used. The addition of organic matter significantly increased soil fungal richness, with the greatest richness achieved in soils amended with pig manure. Importantly, following addition of cow and pig manure, fungal taxa associated with these materials could be found in the soil, suggesting that these exogenous species can augment soil fungal composition. Moreover, the addition of organic matter decreased the relative abundance of potential pathogenic fungi. Overall, these results indicate that organic matter addition influences the composition and structure of soil fungal communities in predictable ways. © 2016 Society for Applied Microbiology and John Wiley & Sons Ltd.

Effects of Nitrogen Fixing Pre-Crops and Fertilizers on Physical and Chemical Properties Down the Soil Profile

NASA Astrophysics Data System (ADS)

Hobley, E.; Honermeier, B.; Don, A.; Gocke, M. I.; Amelung, W.; Kogel-Knabner, I.

2016-12-01

We investigated the effects of pre-crops with and without biological nitrogen fixation capacity (fava beans, clover mulch, fodder maize) and fertilization (no fertilizer, NPK fertilizer, PK fertilizer) on soil physico-chemical properties (bulk density, electrical conductivity, soil organic carbon (SOC) concentration and stocks, N concentration and stocks) and their depth distribution (down to 1 m) at a long-term field experiment set up in 1982 in Gießen, Germany. Fertilization had significant but small impacts on the soil chemical environment, most particularly the salt content of the soil, with PK fertilization increasing electrical conductivity throughout the soil profile. Similarly, fertilization resulted in a small reduction of soil pH throughout the entire soil profile. The soil was physically and chemically affected by the type of pre-crop. Plots with fava beans and maize had lower bulk densities in the subsoil than those with clover. Pre-crop type also significantly affected the depth distribution of both N and SOC. Specifically, clover pre-cropping led to an enrichment of N at the surface compared with fava beans and maize. SOC enrichment at the surface was also observed under clover, with the effect most pronounced under PK fertilization. Combined with the bulk density effects, this shift in N distribution resulted in significantly higher N stocks under clover than under fava beans. However, the total stocks of SOC were not affected by pre-crop or fertilizer regime. Our results indicate that humans influence C and N cycling and distribution in soils through the selection of pre-crops and that the influence of crop type is greater than that of fertilization regimes. Pre-cropping with clover, which is used as a mulch, leads to N enrichment in the topsoil, reducing the need for N fertilizer for the subsequent cereal crop. In contrast, the use of fava beans as a pre-crop does not lead to N enrichment. We believe this is due to the greater rooting depth of fava beans compared with clover, resulting in lower bulk density in the subsoil and associated lower stocks. Additionally, the harvest of fava beans removes N-rich biomass from the soil, lowering N-input. Lastly, the uptake of water at depth may facilitate subsoil N uptake, so that fava bean N is utilized by the cereal crop but does not lead to its enrichment in the subsoil.

Analysis and modeling of soil slips in the Emilia Romagna Apennine (Northern Italy)

NASA Astrophysics Data System (ADS)

Montrasio, L.; Valentino, R.; Losi, G.

2009-04-01

On 10-11 April 2005 the Emilia Romagna Apennine was affected by an intense rainfall event that triggered dozens of soil slips in the Province of Reggio Emilia. These phenomena have been widely described in the scientific literature, referring to historical events occurred in many parts of the world. The particular danger of these phenomena is related to their speed of development, with the difficulty of foreseeing their location, but also with the high density of distribution of individual phenomena, whose downhill trajectories have a substantial probability of interfering with urbanized areas. During the event of April 2005 in the Emilia Romagna Apennine, these shallow landslides mainly occurred on slopes of cultivated lands, often provoking the interruption of roads, heavy damages to the farming activities and economic losses. On the basis of an inventory by aerial photograph interpretation, it was possible to locate 45 sites where soil slips occurred. In the present work the study area is described, considering both geological and climatic aspects. The inducing factors, which are relative to the territory morphology, and the outbreak factors of the triggering mechanism, which are relative to the rainfall conditions, are deeply analyzed. Once known geometrical features and soil characteristics of the slopes, for each site a physically based triggering model, that has recently developed by the Authors, has been applied by considering the local scale of the phenomenon. The model allows to take into account dynamically, in a simplified way, the connection between the stability condition of a slope, the characteristics of the soil and rainfall amounts, including also antecedent rainfalls. The model, in fact, is aimed to give an answer to the recent challenge represented by the dynamic use of real-time landslides early warning systems, the basis of which have to be the coupling between rainfall amounts, hydrological model and stability slope models. The triggering model is based on the limit equilibrium method and considers the hypothesis of infinite slope. The model takes into account the mechanical characteristics of the soil, in condition of partial saturation, and the outflow of underground water. The model allows to calculate the safety factor of a slope versus time on the basis of the previous rainfall amount. The paper contains also a detailed explanation of the choice of the model input data that have been used to carry out the procedure of back analysis for the 45 study sites. In particular, the slope angle has been evaluated for each site on the basis of the Digital Elevation Model (DEM) information and the thickness of the soil has been determined on the basis of field observations. Colluvial, regolithic and in general Quaternary deposits are the soils involved in the soil slips considered. On the basis of geological map information and according to the Unified Soil Classification System (USCS), the most common types of soil present in the sample sites resulted silty sand, silty clay and sandy silt. The physical properties of these soils, such as porosity and specific weight, and Mohr-Coulomb shear strength parameters, were assumed taking into account the average values of parameters as reported in the scientific literature for the same types of soils. Other specific model parameters that are directly linked with the type of soil, have been consequently assigned on the basis of previous works carried out by the Authors. Moreover, the parameter that describes the discharge capability of the soil, has been assumed as typical permeability value obtained through field measurements by other Authors, for similar kind of soils and conditions. The results obtained by the application of the model are accurately analyzed and discussed. For each analyzed site, it is shown how the model highlights the instability condition on the real date of the event and the stability condition for the remaining period, under an observation period of 3 years, thus confirming the capability of the model to grasp the triggering mechanism of the analyzed phenomena.

Incorporation of 13C labeled Pinus ponderosa needle and fine root litter into soil organic matter measured by Py-GC/MS-C-IRMS

NASA Astrophysics Data System (ADS)

Mambelli, S.; Gleixner, G.; Dawson, T. E.; Bird, J. A.; Torn, M. S.

2006-12-01

Developing effective strategies for enhancing C storage in soils requires understanding the influence of plant C quality. In turn, plant C quality impacts the decay continuum between plant residue and humified, stable SOM. This remains one of the least understood aspects of soil biogeochemistry. We investigated the initial phase of incorporation of 13C labeled Pinus ponderosa needle and fine root litter into SOM. The two litter types were placed in separate microcosms in the A horizon in a temperate conifer soil. Curie-point pyrolysis-gas chromatography coupled with on-line mass spectrometry and isotope ratio mass spectrometry (Py-GC/MS-C- IRMS) were used to determine the identity and the 13C enrichment of pyrolysis products (fragments of carbohydrates, lignin, proteins and lipids). We compared the two initial litter types, needles and fine roots, to samples of the bulk soil (A horizon, < 2mm) and soil humin fraction (from chemical solubility) obtained from each microcosm 1.5y after litter addition. Pyrolysis of plant material and SOM produced 56 suitable products for isotopic analysis; of them, 15 occurred in both the litter and bulk soil, 7 in both the litter and the humin fraction and 9 in both bulk soil and the humin fraction. The pyrolysis products found in common in the plant and soil were related either to polysaccharides or were non-specific and could have originated from various precursors. The data suggest that the majority of plant inputs, both from needles or fine roots, were degraded very rapidly. In the humin fraction, the most recalcitrant pool of C in soil, with a measured turnover time of 260y (this soil), only products from the fragmentation of polysaccharides and alkyl-benzene compounds were found. Comparisons of the enrichment normalized by input level suggest little difference between the incorporation of C from needles versus fine roots into SOM. The most enriched fragments in the humin fraction were products from polysaccharides degradation, indicating a very important role of microbial processing in the stabilization of C in SOM.

Dust and nutrient enrichment by wind erosion from Danish soils in dependence of tillage direction

NASA Astrophysics Data System (ADS)

Mohammadian Behbahani, Ali; Fister, Wolfgang; Heckrath, Goswin; Kuhn, Nikolaus J.

2016-04-01

Wind erosion is a selective process, which promotes erosion of fine particles. Therefore, it can be assumed that increasing erosion rates are generally associated with increasing loss of dust sized particles and nutrients. However, this selective process is strongly affected by the orientation and respective trapping efficiency of tillage ridges and furrows. Since tillage ridges are often the only protection measure available on poorly aggregated soils in absence of a protective vegetation cover, it is very important to know which orientation respective to the dominant wind direction provides best protection. This knowledge could be very helpful for planning erosion protection measures on fields with high wind erosion susceptibility. The main objective of this study, therefore, was to determine the effect of tillage direction on dust and nutrient mobilization by wind, using wind tunnel simulations. In order to assess the relationship between the enrichment ratio of specific particle sizes and the amount of eroded nutrients, three soils with loamy sand texture, but varying amounts of sand-sized particles, were selected. In addition, a soil with slightly less sand, but much higher organic matter content was chosen. The soils were tested with three different soil surface scenarios - flat surface, parallel tillage, perpendicular tillage. The parallel tillage operation experienced the greatest erosion rates, independent of soil type. Particles with D50 between 100-155 μm showed the greatest risk of erosion. However, due to a greater loss of dust sized particles from perpendicularly tilled surfaces, this wind-surface arrangement showed a significant increase in nutrient enrichment ratio compared to parallel tillage and flat surfaces. The main reason for this phenomenon is most probably the trapping of larger particles in the perpendicular furrows. This indicates that the highest rate of soil protection does not necessarily coincide with lowest soil nutrient losses and dust emissions. For the evaluation of protection measures on these soil types in Denmark it is, therefore, important to differentiate between their effectivity to reduce total soil erosion amount, dust emission, and nutrient loss.

Impact of Land Use Management and Soil Properties on Denitrifier Communities of Namibian Savannas.

PubMed

Braker, Gesche; Matthies, Diethart; Hannig, Michael; Brandt, Franziska Barbara; Brenzinger, Kristof; Gröngröft, Alexander

2015-11-01

We studied potential denitrification activity and the underlying denitrifier communities in soils from a semiarid savanna ecosystem of the Kavango region in NE Namibia to help in predicting future changes in N(2)O emissions due to continuing changes of land use in this region. Soil type and land use (pristine, fallow, and cultivated soils) influenced physicochemical characteristics of the soils that are relevant to denitrification activity and N(2)O fluxes from soils and affected potential denitrification activity. Potential denitrification activity was assessed by using the denitrifier enzyme activity (DEA) assay as a proxy for denitrification activity in the soil. Soil type and land use influenced C and N contents of the soils. Pristine soils that had never been cultivated had a particularly high C content. Cultivation reduced soil C content and the abundance of denitrifiers and changed the composition of the denitrifier communities. DEA was strongly and positively correlated with soil C content and was higher in pristine than in fallow or recently cultivated soils. Soil type and the composition of both the nirK- and nirS-type denitrifier communities also influenced DEA. In contrast, other soil characteristics like N content, C:N ratio, and pH did not predict DEA. These findings suggest that due to greater availability of soil organic matter, and hence a more effective N cycling, the natural semiarid grasslands emit more N(2)O than managed lands in Namibia.

Soil types effect on grape and wine composition in Helan Mountain area of Ningxia.

PubMed

Wang, Rui; Sun, Quan; Chang, Qingrui

2015-01-01

Different soil types can significantly affect the composition of wine grapes and the final wine product. In this study, the effects of soil types on the composition of Cabernet Sauvignon grapes and wine produced in the Helan Mountains were evaluated. Three different representative soil types--aeolian, sierozem and irrigation silting soil were studied. The compositions of grapes and wines were measured, and in addition, the weights of 100-berry samples were determined. The grapes that grown on the aeolian and sierozem soils matured sooner than those grown on the irrigation silting soil. The highest sugar content, total soluble solids content, sugar to acid ratio and anthocyanin content were found in the grapes that grown on the aeolian soil. The wine produced from this soil had improved chroma and tone and higher-quality phenols. The grapes grown on the sierozem soil had the highest total phenol and tannin contents, which affected the wine composition. The grapes grown on the irrigation silting soil had higher acidities, but the remaining indices were lower. In addition, the grapes grown on the aeolian soil resulted in wines with better chroma and aroma. The sierozem soil was beneficial for the formation of wine tannins and phenols and significantly affected the wine composition. The quality of the grapes from the irrigation silting soil was relatively low, resulting in lower-quality wine.

[Relationships of soil organic carbon with its active and non-active components under different land use types in the middle reaches of Heihe River, China].

PubMed

Zhang, Jun-Hua; Li, Guo-Dong; Wang, Yan-Song; Nan, Zhong-Ren; Zhao, Li-Ping

2012-12-01

Taking the seven typical land use types (paddy field, dry land, medium coverage grassland, saline-alkali field, bare land, desert, and sandlot) in the middle reaches of Heihe River as test objects, this paper studied the relationships of soil organic carbon content with its components. In the 0-100 cm soil profile, the contents of soil total organic carbon (TOC) , active organic carbon (AOC), and non-active organic carbon (NOC) decreased with increasing depth. The soil TOC, AOC, and NOC contents differed with land use type. Land use change induced the increase or decrease of soil organic carbon content. The tillage in paddy field was an available way to increase the contents of soil TOC, AOC, and NOC. After land use change, soil NOC rather than AOC contributed more to soil TOC content. For the same land use types, soil AOC and NOC contents increased together with increasing soil TOC content, and the NOC content increased faster than the AOC content. The soil TOC content corresponding to the crossing point of the variation trend lines of soil AOC and NOC contents could be considered as the boundary point of TOC accumulation or loss, and the saturation capacities of soil AOC and NOC could be obtained by the variation trend lines of the AOC and NOC.

Post-fire mulching and soil hydrological response

NASA Astrophysics Data System (ADS)

Jordán, Antonio; Zavala, Lorena M.; Gordillo-Rivero, Ángel J.; Muñoz-Rojas, Miriam; Keesstra, Saskia; Cerdà, Artemi

2017-04-01

In general, one of the major threats after a forest fire is the increased erosion. This can occur due to the erosive impact of rainfall after a drastic reduction of vegetation cover or to changes in soil surface properties that contribute to enhanced runoff flow. There is a consensus among researchers that one of the best ways to reduce this risk is to apply a mulch cover (straw, shredded wood or other materials) immediately after fire. In this study, we studied the effectiveness of various types of mulch materials for the reduction of runoff and soil loss during the first 3 years after a forest fire, in plots of different sizes, with special attention to water repellency and physical properties of the soil surface. In general, straw mulch reduced both runoff and erosion rate more than other treatments. However, the effect was much more important on larger plots. This may be due to specific processes and impacts on sediment connectivity and surface water flow. Therefore, the effect of the scale seems to be an important factor in the management of burnt soils.

40 CFR 268.32 - Waste specific prohibitions-Soils exhibiting the toxicity characteristic for metals and...

Code of Federal Regulations, 2011 CFR

2011-07-01

... 40 Protection of Environment 27 2011-07-01 2011-07-01 false Waste specific prohibitions-Soils... Prohibitions on Land Disposal § 268.32 Waste specific prohibitions—Soils exhibiting the toxicity characteristic... from land disposal: any volumes of soil exhibiting the toxicity characteristic solely because of the...

40 CFR 268.32 - Waste specific prohibitions-Soils exhibiting the toxicity characteristic for metals and...

Code of Federal Regulations, 2013 CFR

2013-07-01

... 40 Protection of Environment 28 2013-07-01 2013-07-01 false Waste specific prohibitions-Soils... Prohibitions on Land Disposal § 268.32 Waste specific prohibitions—Soils exhibiting the toxicity characteristic... from land disposal: any volumes of soil exhibiting the toxicity characteristic solely because of the...

40 CFR 268.32 - Waste specific prohibitions-Soils exhibiting the toxicity characteristic for metals and...

Code of Federal Regulations, 2012 CFR

2012-07-01

... 40 Protection of Environment 28 2012-07-01 2012-07-01 false Waste specific prohibitions-Soils... Prohibitions on Land Disposal § 268.32 Waste specific prohibitions—Soils exhibiting the toxicity characteristic... from land disposal: any volumes of soil exhibiting the toxicity characteristic solely because of the...

40 CFR 268.32 - Waste specific prohibitions-Soils exhibiting the toxicity characteristic for metals and...

Code of Federal Regulations, 2010 CFR

2010-07-01

... 40 Protection of Environment 26 2010-07-01 2010-07-01 false Waste specific prohibitions-Soils... Prohibitions on Land Disposal § 268.32 Waste specific prohibitions—Soils exhibiting the toxicity characteristic... from land disposal: any volumes of soil exhibiting the toxicity characteristic solely because of the...

40 CFR 268.32 - Waste specific prohibitions-Soils exhibiting the toxicity characteristic for metals and...

Code of Federal Regulations, 2014 CFR

2014-07-01

... 40 Protection of Environment 27 2014-07-01 2014-07-01 false Waste specific prohibitions-Soils... Prohibitions on Land Disposal § 268.32 Waste specific prohibitions—Soils exhibiting the toxicity characteristic... from land disposal: any volumes of soil exhibiting the toxicity characteristic solely because of the...

Nutrient properties of five West Virginia forest soils

Treesearch

L. R. Auchmoody

1972-01-01

Nutrient levels in five well-drained forest soils of the northern mountain section of West Virginia were generally associated with the type of parent rocks from which the soils had formed. But in some instances, different rock types yielded soils of similar nutrient composition. Soils formed from limestone and calcareous shale were usually higher in fertility than...

Effect of Soil Type and Moisture Availability on the Foraging Behavior of the Formosan Subterranean Termite (Isoptera: Rhinotermitidae)

USDA-ARS?s Scientific Manuscript database

This study examined the influence of soil type and moisture availability on termite foraging behavior. Physical properties of the soil affected both tunneling behavior and mud tube construction. Termites tunneled through sand faster than top soil and clay. In containers with top soil and clay, termi...

Determination of degradation rates of organic substances in the unsaturated soil zone depending on the grain size fractions of various soil types

NASA Astrophysics Data System (ADS)

Fichtner, Thomas; Stefan, Catalin; Goersmeyer, Nora

2015-04-01

Rate and extent of the biological degradation of organic substances during transport through the unsaturated soil zone is decisively influenced by the chemical and physical properties of the pollutants such as water solubility, toxicity and molecular structure. Furthermore microbial degradation processes are also influenced by soil-specific properties. An important parameter is the soil grain size distribution on which the pore volume and the pore size depends. Changes lead to changes in air and water circulation as well as preferred flow paths. Transport capacity of water inclusive nutrients is lower in existing bad-drainable fine pores in soils with small grain size fractions than in well-drainable coarse pores in a soil with bigger grain size fractions. Because fine pores are saturated with water for a longer time than the coarse pores and oxygen diffusion in water is ten thousand times slower than in air, oxygen is replenished much slower in soils with small grain size fractions. As a result life and growth conditions of the microorganisms are negatively affected. This leads to less biological activity, restricted degradation/mineralization of pollutants or altered microbial processes. The aim of conducted laboratory column experiments was to study the correlation between the grain size fractions respectively pore sizes, the oxygen content and the biodegradation rate of infiltrated organic substances. Therefore two columns (active + sterile control) were filled with different grain size fractions (0,063-0,125 mm, 0,2-0,63 mm and 1-2 mm) of soils. The sterile soil was inoculated with a defined amount of a special bacteria culture (sphingobium yanoikuae). A solution with organic substances glucose, oxalic acid, sinaphylic alcohol and nutrients was infiltrated from the top in intervals. The degradation of organic substances was controlled by the measurement of dissolved organic carbon in the in- and outflow of the column. The control of different pore volumes respectively pore sizes in the soil samples occurred by air pycnometer measurement and determination of soil moisture characteristic by evaporation method according to Wind/Schindler. The present study results can be useful to find a correlation between various soil types with different grain size distributions and the suitability of these soils for example for the infiltration of treated wastewater in the context of managed aquifer recharge (MAR) measures.

Dielectrophoretic sample preparation for environmental monitoring of microorganisms: Soil particle removal.

PubMed

Fatoyinbo, Henry O; McDonnell, Martin C; Hughes, Michael P

2014-07-01

Detection of pathogens from environmental samples is often hampered by sensors interacting with environmental particles such as soot, pollen, or environmental dust such as soil or clay. These particles may be of similar size to the target bacterium, preventing removal by filtration, but may non-specifically bind to sensor surfaces, fouling them and causing artefactual results. In this paper, we report the selective manipulation of soil particles using an AC electrokinetic microfluidic system. Four heterogeneous soil samples (smectic clay, kaolinitic clay, peaty loam, and sandy loam) were characterised using dielectrophoresis to identify the electrical difference to a target organism. A flow-cell device was then constructed to evaluate dielectrophoretic separation of bacteria and clay in a continous flow through mode. The average separation efficiency of the system across all soil types was found to be 68.7% with a maximal separation efficiency for kaolinitic clay at 87.6%. This represents the first attempt to separate soil particles from bacteria using dielectrophoresis and indicate that the technique shows significant promise; with appropriate system optimisation, we believe that this preliminary study represents an opportunity to develop a simple yet highly effective sample processing system.

Combining position-specific 13C labeling with compound-specific isotope analysis: first steps towards soil fluxomics

NASA Astrophysics Data System (ADS)

Dippold, Michaela; Kuzyakov, Yakov

2015-04-01

Understanding the soil organic matter (SOM) dynamics is one of the most important challenges in soil science. Transformation of low molecular weight organic substances (LMWOS) is a key step in biogeochemical cycles because 1) all high molecular substances pass this stage during their decomposition and 2) only LMWOS will be taken up by microorganisms. Previous studies on LMWOS were focused on determining net fluxes through the LMWOS pool, but they rarely identified transformations. As LMWOS are the preferred C and energy source for microorganisms, the transformations of LMWOS are dominated by biochemical pathways of the soil microorganisms. Thus, understanding fluxes and transformations in soils requires a detailed knowledge on the biochemical pathways and its controlling factors. Tracing C fate in soil by isotopes became on of the most applied and promising biogeochemistry tools. Up to now, studies on LMWOS were nearly exclusively based on uniformly labeled organic substances i.e. all C atoms in the molecules were labeled with 13C or 14C. However, this classical approach did not allow the differentiation between use of intact initial substances in any process, or whether they were transformed to metabolites. The novel tool of position-specific labeling enables to trace molecule atoms separately and thus to determine the cleavage of molecules - a prerequisite for metabolic tracing. Position-specific labeling of LMWOS and quantification of 13CO2 and 13C in bulk soil enabled following the basic metabolic pathways of soil microorganisms. However, only the combination of position-specific 13C labeling with compound-specific isotope analysis of microbial biomarkers and metabolites allowed 1) tracing specific anabolic pathways in diverse microbial communities in soils and 2) identification of specific pathways of individual functional microbial groups. So, these are the prerequisites for soil fluxomics. Our studies combining position-specific labeled glucose with amino sugar 13C analysis showed that oxidizing catabolic pathways and anabolic pathways, i.e. building-up new cellular compounds, occurred in soils simultaneously. This involved an intensive C recycling within the microorganisms that was observed not only for cytosolic compounds but also for cell wall polymers. Fungal metabolism and fluxes were slower than bacterial intracellular C recycling and turnover. Furthermore, position-specific labeling of glutamate and subsequent 13C analysis of microbial phospholipid fatty acids (PLFA) revealed starvation pathways, which were only active in specific microbial groups in soils. These studies revealed that position-specific labeling enables the reconstruction of metabolic pathways of LMWOS within diverse microbial communities in complex media such as soil. Processes occurring simultaneously in soil i.e. 1) within individual, reversible metabolic pathways and 2) in various microbial groups could be traced by position-specific labeling in soils in situ. Tracing these pathways and understanding their regulating factors are crucial for soil C fluxomics, the extremely complex network of transformations towards mineralization versus the formation of microbial biomass compounds. Quantitative models to assess microbial group specific metabolic networks can be generated and parameterized by this approach. The submolecular knowledge of transformation steps and biochemical pathways in soils and their regulating factors is essential for understanding C cycling and long-term C storage in soils.

Detection of Methanotroph Diversity on Roots of Submerged Rice Plants by Molecular Retrieval of pmoA, mmoX, mxaF, and 16S rRNA and Ribosomal DNA, Including pmoA-Based Terminal Restriction Fragment Length Polymorphism Profiling

PubMed Central

Horz, Hans-Peter; Yimga, Merlin Tchawa; Liesack, Werner

2001-01-01

The diversity of methanotrophic bacteria associated with roots of submerged rice plants was assessed using cultivation-independent techniques. The research focused mainly on the retrieval of pmoA, which encodes the α subunit of the particulate methane monooxygenase. A novel methanotroph-specific community-profiling method was established using the terminal restriction fragment length polymorphism (T-RFLP) technique. The T-RFLP profiles clearly revealed a more complex root-associated methanotrophic community than did banding patterns obtained by pmoA-based denaturing gradient gel electrophoresis. The comparison of pmoA-based T-RFLP profiles obtained from rice roots and bulk soil of flooded rice microcosms suggested that there was a substantially higher abundance of type I methanotrophs on rice roots than in the bulk soil. These were affiliated to the genera Methylomonas, Methylobacter, Methylococcus, and to a novel type I methanotroph sublineage. By contrast, type II methanotrophs of the Methylocystis-Methylosinus group could be detected with high relative signal intensity in both soil and root compartments. Phylogenetic treeing analyses and a set of substrate-diagnostic amino acid residues provided evidence that a novel pmoA lineage was detected. This branched distinctly from all currently known methanotrophs. To examine whether the retrieval of pmoA provided a complete view of root-associated methanotroph diversity, we also assessed the diversity detectable by recovery of genes coding for subunits of soluble methane monooxygenase (mmoX) and methanol dehydrogenase (mxaF). In addition, both 16S rRNA and 16S ribosomal DNA (rDNA) were retrieved using a PCR primer set specific to type I methanotrophs. The overall methanotroph diversity detected by recovery of mmoX, mxaF, and 16S rRNA and 16S rDNA corresponded well to the diversity detectable by retrieval of pmoA. PMID:11526021

Progressing towards more quantitative analytical pyrolysis of soil organic matter using molecular beam mass spectroscopy of whole soils and added standards

DOE Office of Scientific and Technical Information (OSTI.GOV)

Haddix, Michelle L.; Magrini-Bair, Kim; Evans, Robert J.

Soil organic matter (SOM) is extremely complex. It is composed of hundreds of different organic substances and it has been difficult to quantify these diverse substances in a dynamic-ecosystem functioning standpoint. Analytical pyrolysis has been used to compare chemical differences between soils, but its ability to measure the absolute amount of a specific compound in the soil is still in question. Our objective was to assess whether utilizing pyrolysis-molecular beam mass spectroscopy (py-MBMS) to define the signature of known reference compounds (adenine, indole, palmitic acid, etc.) and biological samples (chitin, fungi, cellulose, etc.) separately and when added to whole soilsmore » it was possible to make py-MBMS more quantitative. Reference compounds, spanning a wide variety of compound categories, and biological samples, expected to be present in SOM, were added to three soils from Colorado, Ohio, and Massachusetts that have varying total C, % clay, and clay type. Py-MBMS, a rapid analysis technique originally developed to analyze complex biomolecules, flash pyrolyzes soil organic matter to form products that are often considered characteristic of the original molecular structure. Samples were pyrolyzed at 550 degrees C by py-MBMS. All samples were weighed and %C and %N determined both before and after pyrolysis to evaluate mass loss, C loss, and N loss for the samples.An average relationship of r2 = 0.76 (P = 0.005) was found for the amount of cellulose added to soil at 25, 50, and 100% of soil C relative to the ion intensity of select mass/charge of the compound.There was a relationship of r2 = 0.93 (P < 0.001) for the amount of indole added to soil at 25, 50, and 100% of soil C and the ion intensity of the associated mass variables (mass/charge). Comparing spectra of pure compounds with the spectra of the compounds added to soil and isolated clay showed that interference could occur based on soil type and compound with the Massachusetts soil with high C (55.8 g C kg-1) and low % clay (5.4%) having the least interference and the Colorado soil with low C (14.6 g C kg-1) and a moderate smectite clay content of 14% having the greatest soil interference. Due to soil interference from clay type and content and varying optimum temperatures of pyrolysis for different compounds it is unlikely that analytical pyrolysis can be quantitative for all types of compounds. Select compound categories such as carbohydrates have the potential to be quantified in soil with analytical pyrolysis due to the fact that they: 1) almost fully pyrolyzed, 2) were represented by a limited number of m/z, and 3) had a strong relationship with the amount added and the total ion intensity produced. The three different soils utilized in this study had similar proportions of C pyrolyzed in the whole soil (54-57%) despite differences in %C and %clay between the soils. Mid-infrared spectroscopic analyses of the soil before and after pyrolysis showed that pyrolysis resulted in reductions in the 3400, 2930-2870, 1660 and 1430 cm-1 bands. These bands are primarily representative of O-H and N-H bonds, C-H stretch, and ..delta.. (CH2) in polysaccharides/lipid and are associated with mineralizable SOM. The incorporation of standards into routine analytical pyrolysis allowed us to assess the quantitative potential of py-MBMS along with the effect of the mineral matrix, which we believe is applicable to all forms of analytical pyrolysis.« less

Assessing the Relative Effects of Geographic Location and Soil Type on Microbial Communities Associated with Straw Decomposition

PubMed Central

Wang, Xiaoyue; Wang, Feng; Jiang, Yuji

2013-01-01

Decomposition of plant residues is largely mediated by soil-dwelling microorganisms whose activities are influenced by both climate conditions and properties of the soil. However, a comprehensive understanding of their relative importance remains elusive, mainly because traditional methods, such as soil incubation and environmental surveys, have a limited ability to differentiate between the combined effects of climate and soil. Here, we performed a large-scale reciprocal soil transplantation experiment, whereby microbial communities associated with straw decomposition were examined in three initially identical soils placed in parallel in three climate regions of China (red soil, Chao soil, and black soil, located in midsubtropical, warm-temperate, and cold-temperate zones). Maize straws buried in mesh bags were sampled at 0.5, 1, and 2 years after the burial and subjected to chemical, physical, and microbiological analyses, e.g., phospholipid fatty acid analysis for microbial abundance, community-level physiological profiling, and 16S rRNA gene denaturing gradient gel electrophoresis, respectively, for functional and phylogenic diversity. Results of aggregated boosted tree analysis show that location rather soil is the primary determining factor for the rate of straw decomposition and structures of the associated microbial communities. Principal component analysis indicates that the straw communities are primarily grouped by location at any of the three time points. In contrast, microbial communities in bulk soil remained closely related to one another for each soil. Together, our data suggest that climate (specifically, geographic location) has stronger effects than soil on straw decomposition; moreover, the successive process of microbial communities in soils is slower than those in straw residues in response to climate changes. PMID:23524671

In-situ Subsurface Soil Analyzer

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ulmer, Chris

The Department of Energy’s (DOE’s) Terrestrial Ecosystem Science (TES) program is seeking improved sensor systems for monitoring hydro-biogeochemical processes in complex subsurface environments. The TES program is specifically interested in acquiring chemical and structural information regarding the type and nature of the hydration and redox states of subsurface chemical species. The technology should be able to perform on-site and real-time measurements to provide information not available using current sample acquisition and preservation processes. To address the needs of the DOE and the terrestrial science community, Physical Optics Corporation (POC) worked on the development of a new In-Situ Subsurface Soil Analyzermore » (ISSA) based on magnetic resonance technologies. Benchtop testing was performed to assess the feasibility of continuous wave electron pair resonance (CW-EPR) detection of chemical species in subsurface soil systems.« less

Surface Analysis Evaluation of Handwipe Cleaning for the Space Shuttle RSRM

NASA Technical Reports Server (NTRS)

Lesley, Michael W.; Anderson, Erin L.; McCool, Alex (Technical Monitor)

2001-01-01

In this paper we discuss the role of surface-sensitive spectroscopy (electron spectroscopy for chemical analysis, or ESCA) in the selection of solvents to replace 1,1,1-trichloroethane in handwipe cleaning of bonding surfaces on NASA's Space Shuttle Reusable Solid Rocket Motor (RSRM). Removal of common process soils from a wide variety of metallic and polymeric substrates was characterized. The cleaning efficiency was usually more dependent on the type of substrate being cleaned and the specific process soil than on the solvent used. A few substrates that are microscopically rough or porous proved to be difficult to clean with any cleaner, and some soils were very tenacious and difficult to remove from any substrate below detection limits. Overall, the work showed that a wide variety of solvents will perform at least as well as 1,1,1-trichloroethane.

[Effects of sand burial on fluxes of greenhouse gases from the soil covered by biocrust in an arid desert region.

PubMed

Teng, Jia Ling; Jia, Rong Liang; Hu, Yi Gang; Xu, Bing Xin; Chen, Meng Chen; Zhao, Yun

2016-03-01

Based on the measurements of the fluxes of CO 2 , CH 4 and N 2 O from the soil covered by two types of biocrusts dominated separately by moss and algae-lichen, followed by 0 (control), 1 (shallow) and 10 (deep) mm depths of sand burial treatments, we studied the effects of sand burial on greenhouse gases fluxes and their relationships with soil temperature and moisture at Shapotou, southeastern edge of the Tengger Desert. The results showed that sand burial had significantly positive effects on CO 2 emission fluxes and CH 4 uptake fluxes of the soil covered by the two types of biocrusts, but imposed differential effects on N 2 O fluxes depending on the type of biocrust and the depth of burial. Deep burial (10 mm) dramatically increased the N 2 O uptake fluxes of the soil co-vered by the two types of biocrusts, while shallow burial (1 mm) decreased the N 2 O uptake flux of the soil co-vered by moss crust only and had no significant effects on N 2 O uptake flux of the soil covered by algae-lichen crust. In addition, CO 2 fluxes of the two biocrusts were closely related to the soil temperature and soil moisture, thereby increasing with the raised soil surface temperature and soil moisture caused by sand burial. However, the relationships of burial-induced changes of soil temperature and moisture with the changes in the other two greenhouse gases fluxes were not evident, indicating that the variations of soil temperature and moisture caused by sand burial were not the key factors affecting the fluxes of CH 4 and N 2 O of the soil covered by the two types of biocrusts.

[Evaluation of soil quality under different land use types in Naban River watershed, Yunnan Province of Southwest China].

PubMed

Xie, Jin; Li, Zhao-Li; Li, Yong-Mei; Guo, Fang-Fang

2011-12-01

Eighty-six topsoil (0-20 cm) samples were collected from 8 land use types (natural forest land, maize field, tea garden, paddy field, rubber plantation, flax field, banana plantation, and sugarcane field) in the Naban River Watershed National Nature Reserve and its surrounding areas, and the soil physical and chemical properties were analyzed, aimed to study the effects of land use type on the soil quality by the method of soil quality index (SQI). Comparing with natural forest land, all the cultivated lands had somewhat decreased soil organic matter content and higher soil bulk density, and the soil bulk density was significantly higher in tea garden, paddy field, rubber plantation, and banana plantation. In cultivated lands, fertilization and reclamation made the soil available potassium and phosphorus contents maintained at a higher level, probably due to the input of mineral potassium and phosphorus and the decomposition of soil organic matter. The SQI of the 8 land use types was in the order of flax field (0.595) > natural forest land (0.532) > maize field (0.516) > banana plantation (0.485) tea garden (0.480) sugarcane field (0.463) > paddy field (0.416) > rubber plantation (0.362). The soils in higher altitude production demonstration areas (1614 +/-115 m) had significant higher SQI, compared to the soils in lower altitude buffer areas (908 +/- 98 m) and junction areas (926 +/- 131 m). Among the 8 land use types, the rubber plantation in lower altitude areas had the lowest SQI, due to the lower soil organic matter and available potassium and phosphorus contents and the highest soil bulk density. Application of organic manure or intercropping with leguminous plants could be an available practice to improve the soil quality of the rubber plantation.

Influence of soil types and osmotic pressure on growth and 137Cs accumulation in blackgram (Vigna mungo L.).

PubMed

Win, Khin Thuzar; Oo, Aung Zaw; Bellingrath-Kimura, Sonoko Dorothea

2017-04-01

A pot experiment was conducted to study the effects of soil types and osmotic levels on growth and 137 Cs accumulation in two blackgram varieties differing in salinity tolerance grown in Fukushima contaminated soils. The contamination levels of the sandy clay loam and clay soil were 1084 and 2046 Bq kg -1 DW, respectively. The 137 Cs activity was higher in both plants grown on the sandy clay loam than on the clay soil regardless of soil 137 Cs activity concentration. No significant differences were observed in all measured growth parameters between the two varieties under optimal water conditions for both types of soil. However, the growth, leaf water contents and 137 Cs activity concentrations in both plants were lower in both soil types when there was water stress induced by addition of polyethylene glycol. Water stress-induced reduction in total leaf area and total biomass, in addition to leaf relative water content, were higher in salt sensitive 'Mut Pe Khaing To' than in salt tolerant 'U-Taung-2' plants for both soil types. Varietal difference in decreased 137 Cs uptake under water stress was statically significant in the sandy clay loam soil, however, it was not in the clay soil. The transfer of 137 Cs from soil to plants (i.e., root, stem and leaf) was higher for the sandy clay loam for both plants when compared with those of the clay soil. The decreased activity of 137 Cs in the above ground samples (leaf and stem) in both plants in response to osmotic stress suggested that plant available 137 Cs decreased when soil water is limited by osmotic stress. Copyright © 2017 Elsevier Ltd. All rights reserved.

Soil chemical factors and grassland species density in Emas National Park (central Brazil).

PubMed

Amorim, P K; Batalha, M A

2008-05-01

Studies of grasslands on specific soil types suggest that different nutrients can limit biomass production and, hence, species composition and number. The Brazilian cerrado is the major savanna region in America and once covered about 2 million km(2), mainly in the Brazilian Central Plateau, under seasonal climate, with wet summer and dry winter. In view of the importance of soil chemical factors in the distribution of the vegetation forms within the Cerrado domain and which may influence the number of species, we analyzed some soil characteristics in three herbaceous vegetation forms -- hyperseasonal cerrado, seasonal cerrado, and wet grassland -- in Emas National Park, a core cerrado site, to investigate the relationship between number of species and soil characteristics. We collected vegetation and soil samples in these three vegetation forms and submitted the obtained data to multiple linear regression. We found out that aluminum and pH were the best predictors of species density, the former positively related to species density and the latter negatively related. Since the predictable variation in species density is important in determining areas of conservation, we can postulate that these two soil factors are indicators of high species density areas in tropical grasslands, which could be used in selecting priority sites for conservation.

Molecular Identification of Ectomycorrhizal Mycelium in Soil Horizons

PubMed Central

Landeweert, Renske; Leeflang, Paula; Kuyper, Thom W.; Hoffland, Ellis; Rosling, Anna; Wernars, Karel; Smit, Eric

2003-01-01

Molecular identification techniques based on total DNA extraction provide a unique tool for identification of mycelium in soil. Using molecular identification techniques, the ectomycorrhizal (EM) fungal community under coniferous vegetation was analyzed. Soil samples were taken at different depths from four horizons of a podzol profile. A basidiomycete-specific primer pair (ITS1F-ITS4B) was used to amplify fungal internal transcribed spacer (ITS) sequences from total DNA extracts of the soil horizons. Amplified basidiomycete DNA was cloned and sequenced, and a selection of the obtained clones was analyzed phylogenetically. Based on sequence similarity, the fungal clone sequences were sorted into 25 different fungal groups, or operational taxonomic units (OTUs). Out of 25 basidiomycete OTUs, 7 OTUs showed high nucleotide homology (≥99%) with known EM fungal sequences and 16 were found exclusively in the mineral soil. The taxonomic positions of six OTUs remained unclear. OTU sequences were compared to sequences from morphotyped EM root tips collected from the same sites. Of the 25 OTUs, 10 OTUs had ≥98% sequence similarity with these EM root tip sequences. The present study demonstrates the use of molecular techniques to identify EM hyphae in various soil types. This approach differs from the conventional method of EM root tip identification and provides a novel approach to examine EM fungal communities in soil. PMID:12514012

Assessing and mitigating the effects of windblown soil on rare and common vegetation.

PubMed

Gleason, Sean M; Faucette, Dave T; Toyofuku, Mai M; Torres, Carlos A; Bagley, Calvin F

2007-12-01

Acting under the auspices of the US Endangered Species Act, we quantified wind erosion and its effects on rare and common plant species on a semi-arid military installation in Hawaii. Our goal was to develop management strategies, based on local data, to aid the conservation of rare and common indigenous plants and their habitats. We collected windblown soil coming off of roads and other disturbed soils to assess likely impacts to plants occurring at certain heights and distances from disturbed surfaces. We then subjected plants in a glasshouse to windblown dust treatments, designed from our field data to simulate erosion events, and evaluated the effect of these treatments on photosynthesis and survival. We also designed several field experiments to examine the in-situ effects of windblown soil and soil substrate on germination, growth rate, and survival of indigenous and nonindigenous plants. We conclude from these experiments that most direct effects of windblown soil to plants can be effectively mitigated by locating roads and training areas at least 40 m from sensitive plant habitats and through vegetation management to maintain at least 11% aerial cover on disturbed surfaces. Effects of soil type on germination, growth, and survival was species-specific, emphasizing the importance of species trials prior to, or during, rehabilitation efforts.

Estimating Surface Soil Moisture in a Mixed-Landscape using SMAP and MODIS/VIIRS Data

NASA Astrophysics Data System (ADS)

Tang, J.; Di, L.; Xiao, J.

2017-12-01

Soil moisture, a critical parameter of earth ecosystem linking land surface and atmosphere, has been widely applied in many application (Di, 1991; Njoku et al. 2003; Western 2002; Zhao et al. 2014; McColl et al. 2017) from regional to continental or even global scale. The advent of satellite-based remote sensing, particular in the last two decades, has proven successful for mapping the surface soil moisture (SSM) from space (Petropoulos et al. 2015; Kim et al. 2015; Molero et al. 2016). The current soil moisture products, however, is not able to fully characterize the spatial and temporal variability of soil moisture at mixed landscape types (Albergel et al. 2013; Zeng et al. 2015). In this research, we derived the SSM at 1-km spatial resolution by using sensor observation and high-level products from SMAP and MODIS/VIIRS as well as metrorological, landcover, and soil data. Specifically, we proposed a practicable method to produce the originally planned SMAP L3_SM_A with comparable quality by downscaling the SMAP L3_SM_P product through a proved method, the geographically weighted regression method at mixed landscape in southern New Hampshire. This estimated SSM was validated using the Soil Climate Analysis Network (SCAN) from Natural Resources Conservation Service (NRCS) of United States Department of Agriculture (USDA).

Modeled change in carbon balance between 1970-2100 of a polygonal arctic tundra ecosystem near Barrow, Alaska

NASA Astrophysics Data System (ADS)

Lara, M. J.; McGuire, A. D.; Euskirchen, E. S.; Sloan, V. L.; Iversen, C. M.; Norby, R. J.; Genet, H.; Zhang, Y.; Yuan, F.

2013-12-01

Northern permafrost regions are estimated to cover 16% of the global soil area and account for approximately 50% of the global belowground organic carbon pool. However, there are considerable uncertainties regarding the fate of this soil carbon pool with projected climate warming over the next century. In northern Alaska, nearly 65% of the terrestrial surface is composed of polygonal tundra, where microtopographic position (i.e. high center, low center, trough) varies surface hydrology, plant community composition, and biogeochemical cycling, over small (<5m) spatial scales. Due to large spatial heterogeneity and other non-linear responses of soil carbon to altered thermal regime, it is difficult to accurately estimate the fate of terrestrial carbon balance over decadal time-scales without explicitly considering the dynamically coupled processes driving permafrost dynamics, community structure, and ecosystem function. We use a new version of the terrestrial ecosystem model (TEM), which couples a dynamic vegetation and dynamic organic soil model (DVM-DOS-TEM). This large-scale ecosystem model is designed to study interactions among carbon and nitrogen cycling, vegetation composition, and soil physical properties, including permafrost and active layer dynamics. The model is parameterized and calibrated using data specific to the local climate, vegetation, and soils within various polygon land cover types (i.e. high center & rim, low center, trough) collected from sites (71.28°N 156.60° W) on the arctic coastal plain near Barrow, Alaska to estimate the likely change in carbon balance between 1970 and 2100 in this landscape. Model outputs are scaled across the Barrow Peninsula using the distribution of polygonal tundra land cover types, described by a land cover classification of 26.9 km2, using a 2008 multi-spectral QuickBird satellite image. The polygonal tundra land cover classification found high center & rims to represent 37.5% of the study area, low centers 19.7%, troughs 9.9%, water bodies (i.e. lakes, ponds, rivers) 17.8%, and non-polygonal tundra (i.e. drainage terraces & graminoid meadows) 15.1%, respectively. The overall accuracy of the map was 86%, based on 250 ground control points, and the Kappa coefficient was 0.77. Preliminary model runs for this region indicated variability in response to specific polygonal tundra land cover type through time. Overall, results suggest that it is important to consider discrete polygonal tundra features in regional estimates of carbon balance in northern Alaska.

Characterization of an Electroanalytical Instrument Suite Searching for Water and Life on Mars

NASA Technical Reports Server (NTRS)

Bostic, Heidi E.

2005-01-01

Seeking the existence of life on other planets is an essential part of NASA's research. Our terrestrial experience suggests that water is a mandatory resource for life to exist and thrive. However, instruments capable of detecting water at the levels likely to be present on Mars are lacking. This project tests the possibility of using electrical measurements of soils, at variable frequencies, as a water detector. Generally, the electrical resistance of soils can be described as a combination of resistance and capacitance, which can be described by a vector including a magnitude and (phase) angle. By specifically studying the impedance measurements and phase angles of different types of soil, spiked with varying concentrations of dissolved ions, measurements can be taken to provide an idea of the behavior of dry Martian soils. The presentation will describe the experimental technique, apparatus and procedures, as well as results conducted to calibrate the instrument and to establish sample preparation protocols.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Van Voris, P.; Cataldo, D.A.; Garland, T.R.

An evaluation of the terrestrial transport, transformations and ecological effects of phosphorus (red phosphorus-butyl rubber (RP/BR)), smoke/obscurant was performed to characterize the effects on: (1) natural vegetation characteristic of US Army training sites in the United States; (2) physical and chemical properties of representative of soils of those sites; and (3) soil microbiological communities. The influence and interactions of smoke/obscurant concentration relative humidity and wind speed was assessed. Toxicity symptoms for plants from repeated or a single exposure included leaf tip burn, leaf curl, leaf abscission and drop, floral abortion, chlorosis, neucrotic spotting, wilting, dessication and dieback for ponderosa pine,more » short needle pine, sagebrush, a native grass (Blando Brome) and bushbean. Soils data suggest an increase in the mobility of selected trace elements after exposure; however, this effect appears to be ameliorated with time. This phenomenon is influenced by soil type, which is a reflection of the buffering capacity of the exposed soil (i.e., Burbank, Quallayute, Shawano, and Yamac) as well as the concentration and duration of exposure. Increased mobility of trace elements is also evidenced in the trace element content of plants grown on soils after exposure to RP/BR smoke. Soil Microbial Community effects show a reduction in the production of nitrate after soil is exposed to RP/BR smoke. This indicates a reduction in ammonium oxidizing bacterial populations, specifically Nitrosomonas and probably Nitrobacter. For the most part most of the plant, soil and soil microbial effects are transient.« less

Performance of soil particle-size distribution models for describing deposited soils adjacent to constructed dams in the China Loess Plateau

NASA Astrophysics Data System (ADS)

Zhao, Pei; Shao, Ming-an; Horton, Robert

2011-02-01

Soil particle-size distributions (PSD) have been used to estimate soil hydraulic properties. Various parametric PSD models have been proposed to describe the soil PSD from sparse experimental data. It is important to determine which PSD model best represents specific soils. Fourteen PSD models were examined in order to determine the best model for representing the deposited soils adjacent to dams in the China Loess Plateau; these were: Skaggs (S-1, S-2, and S-3), fractal (FR), Jaky (J), Lima and Silva (LS), Morgan (M), Gompertz (G), logarithm (L), exponential (E), log-exponential (LE), Weibull (W), van Genuchten type (VG) as well as Fredlund (F) models. Four-hundred and eighty samples were obtained from soils deposited in the Liudaogou catchment. The coefficient of determination (R 2), the Akaike's information criterion (AIC), and the modified AIC (mAIC) were used. Based upon R 2 and AIC, the three- and four-parameter models were both good at describing the PSDs of deposited soils, and the LE, FR, and E models were the poorest. However, the mAIC in conjunction with R 2 and AIC results indicated that the W model was optimum for describing PSD of the deposited soils for emphasizing the effect of parameter number. This analysis was also helpful for finding out which model is the best one. Our results are applicable to the China Loess Plateau.

Evidence for ecological divergence across a mosaic of soil types in an Amazonian tropical tree: Protium subserratum (Burseraceae).

PubMed

Misiewicz, Tracy M; Fine, Paul V A

2014-05-01

Soil heterogeneity is an important driver of divergent natural selection in plants. Neotropical forests have the highest tree diversity on earth, and frequently, soil specialist congeners are distributed parapatrically. While the role of edaphic heterogeneity in the origin and maintenance of tropical tree diversity is unknown, it has been posited that natural selection across the patchwork of soils in the Amazon rainforest is important in driving and maintaining tree diversity. We examined genetic and morphological differentiation among populations of the tropical tree Protium subserratum growing parapatrically on the mosaic of white-sand, brown-sand and clay soils found throughout western Amazonia. Nuclear microsatellites and leaf morphology were used to (i) quantify the extent of phenotypic and genetic divergence across habitat types, (ii) assess the importance of natural selection vs. drift in population divergence, (iii) determine the extent of hybridization and introgression across habitat types, (iv) estimate migration rates among populations. We found significant morphological variation correlated with soil type. Higher levels of genetic differentiation and lower migration rates were observed between adjacent populations found on different soil types than between geographically distant populations on the same soil type. PST -FST comparisons indicate a role for natural selection in population divergence among soil types. A small number of hybrids were detected suggesting that gene flow among soil specialist populations may occur at low frequencies. Our results suggest that edaphic specialization has occurred multiple times in P. subserratum and that divergent natural selection across edaphic boundaries may be a general mechanism promoting and maintaining Amazonian tree diversity. © 2014 John Wiley & Sons Ltd.

ASSESSING DETOXIFICATION AND DEGRADATION OF WOOD PRESERVING AND PETROLEUM WASTES IN CONTAMINATED SOIL

EPA Science Inventory

This study was undertaken to evaluate in-situ soil bioremediation processes, including degradation and detoxification, for two types of wood preserving wastes and two types of petroleum refining wastes at high concentrations in an unacclimated soil. The soil solid phase, water so...

Target-specific digital soil mapping supporting terroir mapping in Tokaj Wine Region, Hungary

NASA Astrophysics Data System (ADS)

Takács, Katalin; Szabó, József; Laborczi, Annamária; Szatmári, Gábor; László, Péter; Koós, Sándor; Bakacsi, Zsófia; Pásztor, László

2016-04-01

Tokaj Wine Region - located in Northeast-Hungary, at Hegyalja, in Tokaj Mountains - is a historical region for botrityzed dessert wine making. Very recently the sustainable quality wine production in the region was targeted, which requires detailed and "terroir-based approach" characterization of viticultural land and the survey of the state of vineyards. Terroir is a homogeneous area that relates to both environmental and cultural factors, that influence the grape and wine quality. Soil plays dominant role determining the viticultural potential and terroir delineation. According to viticultural experts the most relevant soil properties are drainage, water holding capacity, soil depth and pH. Not all of these soil characteristics can be directly measured, therefore the synthesis of observed soil properties is needed to satisfy the requirements of terroir mapping. The sampling strategy was designed to be representative to the combinations of basic environmental parameters (slope, aspect and geology) which determine the main soil properties of the vineyards. Field survey was carried out in two steps. At first soil samples were collected from 200 sites to obtain a general view about the pedology of the area. In the second stage further 650 samples were collected and the sampling strategy was designed based on spatial annealing technique taking into consideration the results of the preliminary survey and the local characteristics of vineyards. The data collection regarded soil type, soil depth, parent material, rate of erosion, organic matter content and further physical and chemical soil properties which support the inference of the proper soil parameters. In the framework of the recent project 33 primary and secondary soil property, soil class and soil function maps were compiled. A set of the resulting maps supports to meet the demands of the Hungarian standard viticultural potential assessment, while the majority of the maps is intended to be applied for terroir delineation. The spatial extension was performed by two, different methods which are widely applied in digital soil mapping. Regression kriging was used for creating continuous soil property maps, category type soil maps were compiled by classification trees method. Accuracy assessment was also provided for all of the soil map products. Our poster will present the summary of the project workflow - the design of sampling strategy, field survey, digital soil mapping process - and some examples of the resulting soil property maps indicating their applicability in terroir delineation. Acknowledgement: The authors are grateful to the Tokaj Kereskedöház Ltd. which has been supporting the project for the survey of the state of vineyards. Digital soil mapping was partly supported by the Hungarian National Scientific Research Foundation (OTKA, Grant No. K105167).

Impact of phenanthrene on the properties of biogeochemical interfaces in soil: A two-layer column study

NASA Astrophysics Data System (ADS)

Reichel, Katharina; Totsche, Kai Uwe

2013-04-01

Biogeochemical interfaces in soils (Totsche et al. 2010) are the "hot spots" of microbial activity and the processing of organic compounds in soils. The production and relocation of mobile organic matter (MOM) and biocolloids like microorganisms are key processes for the formation and depth propagation of biogeochemical interfaces in soils (BGI). Phenanthrene (PHE) has been shown to affect microbial communities in soils (Ding et al. 2012) and may induce shifts in MOM quantity and quality (amount, type and properties of MOM). We hypothesize that the properties of BGI in soil change significantly due to the presence of PHE. The objectives of this study are (i) to evaluate the effect of PHE on soil microbial communities and on MOM quantity and quality under flow conditions with single- and two-layer column experiments and (ii) to assess the role of these processes for the physicochemical, mechanical and sorptive properties of BGI in soils. The soil columns were operated under water-unsaturated conditions. The top layer (source layer, SL, 2 cm) is made of sieved soil material (Luvisol, Scheyern, Germany) spiked with PHE (0.2 mg/g). The bottom layer (reception layer, RL, 10 cm) comprised the same soil without PHE. PHE-free columns were conducted in parallel as reference. Release and transport of MOM in mature soil of a single-layer column experiment was found to depend on the transport regime. The release of larger sized MOM (>0.45 µm) was restricted to an increased residence time during flow interruptions. Steady flow conditions favor the release of smaller MOM (<0.45 µm). Compared to the reference, in the two-layer column experiments higher OC concentrations were detected in the effluent from PHE spiked columns after enhanced flow interruptions (26d, 52d). That indicated the PHE influenced production or mobilization of MOM. Parallel factor analysis of fluorescence excitation and emission matrices revealed the presence of a constant DOM background and two new unknown components in the effluent, probably PHE metabolites. The emergence of new components emphasizes the role of metabolization processes in the release of MOM. The identification of key microbial actors and communities are currently in progress. Totsche, K.U. et al. (2010): Biogeochemical interfaces in soil: The interdisciplinary challenge for soil science. J. Plant Nutr. Soil Sci., 173(1), 88-99 Ding, G.-C., Heuer, H. & Smalla, K. (2012): Dynamics of bacterial communities in two unpolluted soils after spiking with phenanthrene: soil type specific and common responders. Front Microbio 10.3389/fmicb.2012.00290.

Updating categorical soil maps using limited survey data by Bayesian Markov chain cosimulation.

PubMed

Li, Weidong; Zhang, Chuanrong; Dey, Dipak K; Willig, Michael R

2013-01-01

Updating categorical soil maps is necessary for providing current, higher-quality soil data to agricultural and environmental management but may not require a costly thorough field survey because latest legacy maps may only need limited corrections. This study suggests a Markov chain random field (MCRF) sequential cosimulation (Co-MCSS) method for updating categorical soil maps using limited survey data provided that qualified legacy maps are available. A case study using synthetic data demonstrates that Co-MCSS can appreciably improve simulation accuracy of soil types with both contributions from a legacy map and limited sample data. The method indicates the following characteristics: (1) if a soil type indicates no change in an update survey or it has been reclassified into another type that similarly evinces no change, it will be simply reproduced in the updated map; (2) if a soil type has changes in some places, it will be simulated with uncertainty quantified by occurrence probability maps; (3) if a soil type has no change in an area but evinces changes in other distant areas, it still can be captured in the area with unobvious uncertainty. We concluded that Co-MCSS might be a practical method for updating categorical soil maps with limited survey data.

Updating Categorical Soil Maps Using Limited Survey Data by Bayesian Markov Chain Cosimulation

PubMed Central

Dey, Dipak K.; Willig, Michael R.

2013-01-01

Updating categorical soil maps is necessary for providing current, higher-quality soil data to agricultural and environmental management but may not require a costly thorough field survey because latest legacy maps may only need limited corrections. This study suggests a Markov chain random field (MCRF) sequential cosimulation (Co-MCSS) method for updating categorical soil maps using limited survey data provided that qualified legacy maps are available. A case study using synthetic data demonstrates that Co-MCSS can appreciably improve simulation accuracy of soil types with both contributions from a legacy map and limited sample data. The method indicates the following characteristics: (1) if a soil type indicates no change in an update survey or it has been reclassified into another type that similarly evinces no change, it will be simply reproduced in the updated map; (2) if a soil type has changes in some places, it will be simulated with uncertainty quantified by occurrence probability maps; (3) if a soil type has no change in an area but evinces changes in other distant areas, it still can be captured in the area with unobvious uncertainty. We concluded that Co-MCSS might be a practical method for updating categorical soil maps with limited survey data. PMID:24027447

A tropical freshwater wetlands: I. Structure, growth, and regeneration

USGS Publications Warehouse

Allen, J.A.; Krauss, K.W.; Ewel, K.C.; Keeland, B.D.; Waguk, E.E.

2005-01-01

Forested wetlands dominated by Terminalia carolinensis are endemic to Micronesia but common only on the island of Kosrae, Federated States of Micronesia. On Kosrae, these forests occur on Nansepsep, Inkosr, and Sonahnpil soil types, which differ in degree of flooding and soil saturation. We compared forest structure, growth, nutrition, and regeneration on two sites each on Nansepsep and Inkosr soils and one site on the much less common Sonahnpil soil type. Terminalia tree sizes were similar on all three soil types, but forests differed in total basal area, species of smaller trees, and total plant species diversity. Terminalia regeneration was found only on the Inkosr soil type, which had the highest water table levels. Other Terminalia species are relatively light demanding, and T. carolinensis exhibited similar characteristics. It is therefore likely that Terminalia requires periodic, but perhaps naturally rare, stand-replacing disturbances (e.g., typhoons) in order to maintain its dominanace, except on the wettest sites, where competition from other species is reduced. Terminalia swamps in the Nansepsep soil type appeared to be at the greatest risk of conversion to other uses, but swamps on all three types may face reater pressure as Kosrae's population increases and the island's infrastrucure becomes more developed.

The preservation of microbial DNA in archived soils of various genetic types.

PubMed

Ivanova, Ekaterina A; Korvigo, Ilia O; Aparin, Boris F; Chirak, Evgenii L; Pershina, Elizaveta V; Romaschenko, Nikolay S; Provorov, Nikolai A; Andronov, Evgeny E

2017-01-01

This study is a comparative analysis of samples of archived (stored for over 70-90 years) and modern soils of two different genetic types-chernozem and sod-podzolic soils. We revealed a reduction in biodiversity of archived soils relative to their modern state. Particularly, long-term storage in the museum exerted a greater impact on the microbiomes of sod-podzolic soils, while chernozem samples better preserved the native community. Thus, the persistence of microbial DNA in soil is largely determined by the physico-chemical characteristics that differ across soil types. Chernozems create better conditions for the long-term DNA preservation than sod-podzolic soils. This results in supposedly higher levels of biodiversity conservation in the microbiomes of chernozem with preservation of major microbial taxa dominant in the modern (control) soil samples, which makes archived chernozems a promising object for paleosoil studies.

Application and evaluation of the washing effect in the collector well using pilot plant with washing device

NASA Astrophysics Data System (ADS)

Cho, K. H.; Kim, B. J.; Choi, N. C.; Lee, S. J.; Lee, B. H.

2012-04-01

Riverbed/bank filtration (RBF) is a natural process used as a first step in drinking water treatment. RBF systems consist of well fields that draw water from an aquifer that is hydraulically connected to surface waters. The benefits of RBF are multiple and include a reduction of turbidity, total coliform, microbial contaminants natural organic matter, and organic contaminants. Some of the disadvantages of RBF include the difficulty of preventing river water from infiltrating the aquifer in in-stances of severe river contamination, the geochemical reaction of the infiltrate with aquifer materials that may raise the aqueous concentrations of Fe2+, Mn2+, As, NH4+, CH4, Ca2+ and HCO3- , and clogging of the riverbed. For example, has demonstrated that riverbed clogging may decrease the specific capacity of RBF wells (flow reduction in the collector well etc.). The objective of this study is to optimization and evaluation the washing effect on various nozzle type and intervals, soil retention rate in the collector well using pilot plant with washing device for prevention flow reduction in the collector well. The Pilot plant experiments were conducted under various conditions; two kinds nozzle type (spray nozzle of circle type (single - Full Cone, multi - Hollow Cone) and spray nozzle of fan shape type (Veejet)), two different nozzle intervals (200 mm, 400mm) and a various soil retention rate in the collector well (10 ~ 40%). The results of experiment showed that in the nozzle type case, the washing effect of the veeject nozzle was more effective than other (Full Cone, Hollow Cone) nozzle through spray results (range, strength and height). In the nozzle interval conditions, washing effect is 200 mm better than 400 mm through spray distance and soil height. The washing efficiency in the collector well increased on soil retention rate decreased and the nozzle injection pressure increased using washing device

A new concept to study the effect of climate change on different flood types

NASA Astrophysics Data System (ADS)

Nissen, Katrin; Nied, Manuela; Pardowitz, Tobias; Ulbrich, Uwe; Merz, Bruno

2014-05-01

Flooding is triggered by the interaction of various processes. Especially important are the hydrological conditions prior to the event (e.g. soil saturation, snow cover) and the meteorological conditions during flood development (e.g. rainfall, temperature). Depending on these (pre-) conditions different flood types may develop such as long-rain floods, short-rain floods, flash floods, snowmelt floods and rain-on-snow floods. A new concept taking these factors into account is introduced and applied to flooding in the Elbe River basin. During the period September 1957 to August 2002, 82 flood events are identified and classified according to their flood type. The hydrological and meteorological conditions at each day during the analysis period are detemined. In case of the hydrological conditions, a soil moisture pattern classification is carried out. Soil moisture is simulated with a rainfall-runoff model driven by atmospheric observations. Days of similar soil moisture patterns are identified by a principle component analysis and a subsequent cluster analysis on the leading principal components. The meteorological conditions are identified by applying a cluster analysis to the geopotential height, temperature and humidity fields of the ERA40 reanalysis data set using the SANDRA cluster algorithm. We are able to identify specific pattern combinations of hydrological pre-conditions and meteorological conditions which favour different flood types. Based on these results it is possible to analyse the effect of climate change on different flood types. As an example we show first results obtained using an ensemble of climate scenario simulations of ECHAM5 MPIOM model, taking only the changes in the meteorological conditions into account. According to the simulations, the frequency of the meteorological patterns favouring long-rain, short-rain and flash floods will not change significantly under future climate conditions. A significant increase is, however, predicted for the amount of precipitation associated with many of the relevant meteorological patterns. The increase varies between 12 and 67% depending on the weather pattern.

From plot to regional scales: Effect of land use and soil type on soil erosion in the southern Amazon

NASA Astrophysics Data System (ADS)

Schindewolf, Marcus; Schultze, Nico; Amorim, Ricardo S. S.; Schmidt, Jürgen

2015-04-01

The corridor along the Brazilian Highway 163 in the Southern Amazon is affected by radical changes in land use patterns. In order to enable a model based assessment of erosion risks on different land use and soil types a transportable disc type rainfall simulator is applied to identify the most important infiltration and erosion parameters of the EROSION 3D model. Since particle detachment highly depends on experimental plot length, a combined runoff supply is used for the virtually extension of the plot length to more than 20 m. Simulations were conducted on the most common regional land use, soil management and soil types for dry and wet runs. The experiments are characterized by high final infiltration rates (0.3 - 2.5 mm*min^-1), low sediment concentrations (0.2-6.5 g*L^-1) and accordingly low soil loss rates (0.002-50 Kg*m^-2), strongly related to land use, applied management and soil type. Ploughed pastures and clear cuts reveal highest soil losses whereas croplands are less affected. Due to higher aggregate stabilities Ferrasols are less endangered than Acrisols. Derived model parameters are plausible, comparable to existing data bases and reproduce the effects of land use and soil management on soil loss. Thus it is possible to apply the EROSION 3D soil loss model in Southern Amazonia for erosion risk assessment and scenario simulation under changing climate and land use conditions.

Microbial carbon recycling - an underestimated process controlling soil carbon dynamics - Part 1: A long-term laboratory incubation experiment

NASA Astrophysics Data System (ADS)

Basler, A.; Dippold, M.; Helfrich, M.; Dyckmans, J.

2015-10-01

Independent of its chemical structure carbon (C) persists in soil for several decades, controlled by stabilization and recycling. To disentangle the importance of the two factors on the turnover dynamics of soil sugars, an important compound of soil organic matter (SOM), a 3-year incubation experiment was conducted on a silty loam soil under different types of land use (arable land, grassland and forest) by adding 13C-labelled glucose. The compound-specific isotope analysis of soil sugars was used to examine the dynamics of different sugars during incubation. Sugar dynamics were dominated by a pool of high mean residence times (MRT) indicating that recycling plays an important role for sugars. However, this was not substantially affected by soil C content. Six months after label addition the contribution of the label was much higher for microbial biomass than for CO2 production for all examined land use types, corroborating that substrate recycling was very effective within the microbial biomass. Two different patterns of tracer dynamics could be identified for different sugars: while fucose and mannose showed highest label contribution at the beginning of the incubation with a subsequent slow decline, galactose and rhamnose were characterized by slow label incorporation with subsequently constant levels, which indicates that recycling is dominating the dynamics of these sugars. This may correspond to (a) different microbial growing strategies (r and K-strategist) or (b) location within or outside the cell membrane (lipopolysaccharides vs. exopolysaccharides) and thus be subject of different re-use within the microbial food web. Our results show how the microbial community recycles substrate very effectively and that high losses of substrate only occur during initial stages after substrate addition. This study indicates that recycling is one of the major processes explaining the high MRT observed for many SOM fractions and thus is crucial for understanding the global soil C cycle.

Phosphorus saturation and superficial fertilizer application as key parameters to assess the risk of diffuse phosphorus losses from agricultural soils in Brazil.

PubMed

Fischer, P; Pöthig, R; Gücker, B; Venohr, M

2018-07-15

In Brazil, a steady increase in phosphorus (P) fertilizer application and agricultural intensification has been reported for recent decades. The concomitant P accumulation in soils potentially threatens surface water bodies with eutrophication through diffuse P losses. Here, we demonstrated the applicability of a soil type-independent approach for estimating the degree of P saturation (DPS; a risk parameter of P loss) by a standard method of water-soluble phosphorus (WSP) for two major soil types (Oxisols, Entisols) of the São Francisco catchment in Brazil. Subsequently, soil Mehlich-1P (M1P) levels recommended by Brazilian agricultural institutions were transformed into DPS values. Recommended M1P values for optimal agronomic production corresponded to DPS values below critical thresholds of high risks of P losses (DPS=80%) for major crops of the catchment. Higher risks of reaching critical DPS values due to P accumulation were found for Entisols due to their total sorption capacities being only half those of Oxisols. For complementary information on soil mineralogy and its influence on P sorption and P binding forms, Fourier transformation infrared (FTIR) spectroscopic analyses were executed. FTIR analyses suggested the occurrence of the clay minerals palygorskite and sepiolite in some of the analyzed Entisols and the formation of crandallite as the soil specific P binding form in the investigated Oxisols. Palygorskite and sepiolite can enhance P solubility and hence the risk of P losses. In contrast, the reshaping of superphosphate grains into crandallite may explain the chemical processes leading to previously observed low dissolved P concentrations in surface runoff from Oxisols. To prevent high risk of P losses, we recommend avoiding superficial fertilizer application and establishing environmental thresholds for soil M1P based on DPS. These measures could help to prevent eutrophication of naturally oligotrophic surface waters, and subsequent adverse effects on biodiversity and ecosystem function. Copyright © 2018 Elsevier B.V. All rights reserved.

Geographical variation in soil bacterial community structure in tropical forests in Southeast Asia and temperate forests in Japan based on pyrosequencing analysis of 16S rRNA.

PubMed

Ito, Natsumi; Iwanaga, Hiroko; Charles, Suliana; Diway, Bibian; Sabang, John; Chong, Lucy; Nanami, Satoshi; Kamiya, Koichi; Lum, Shawn; Siregar, Ulfah J; Harada, Ko; Miyashita, Naohiko T

2017-09-12

Geographical variation in soil bacterial community structure in 26 tropical forests in Southeast Asia (Malaysia, Indonesia and Singapore) and two temperate forests in Japan was investigated to elucidate the environmental factors and mechanisms that influence biogeography of soil bacterial diversity and composition. Despite substantial environmental differences, bacterial phyla were represented in similar proportions, with Acidobacteria and Proteobacteria the dominant phyla in all forests except one mangrove forest in Sarawak, although highly significant heterogeneity in frequency of individual phyla was detected among forests. In contrast, species diversity (α-diversity) differed to a much greater extent, being nearly six-fold higher in the mangrove forest (Chao1 index = 6,862) than in forests in Singapore and Sarawak (~1,250). In addition, natural mixed dipterocarp forests had lower species diversity than acacia and oil palm plantations, indicating that aboveground tree composition does not influence soil bacterial diversity. Shannon and Chao1 indices were correlated positively, implying that skewed operational taxonomic unit (OTU) distribution was associated with the abundance of overall and rare (singleton) OTUs. No OTUs were represented in all 28 forests, and forest-specific OTUs accounted for over 70% of all detected OTUs. Forests that were geographically adjacent and/or of the same forest type had similar bacterial species composition, and a positive correlation was detected between species divergence (β-diversity) and direct distance between forests. Both α- and β-diversities were correlated with soil pH. These results suggest that soil bacterial communities in different forests evolve largely independently of each other and that soil bacterial communities adapt to their local environment, modulated by bacterial dispersal (distance effect) and forest type. Therefore, we conclude that the biogeography of soil bacteria communities described here is non-random, reflecting the influences of contemporary environmental factors and evolutionary history.

Soil Characteristics Driving Arbuscular Mycorrhizal Fungal Communities in Semiarid Mediterranean Soils

PubMed Central

Torres, Maria Pilar; Montesinos-Navarro, Alicia; Roldán, Antonio

2016-01-01

ABSTRACT We investigated communities of arbuscular mycorrhizal fungi (AMF) in the roots and the rhizosphere soil of Brachypodium retusum in six different natural soils under field conditions. We explored phylogenetic patterns of AMF composition using indicator species analyses to find AMF associated with a given habitat (root versus rhizosphere) or soil type. We tested whether the AMF characteristics of different habitats or contrasting soils were more closely related than expected by chance. Then we used principal-component analysis and multivariate analysis of variance to test for the relative contribution of each factor in explaining the variation in fungal community composition. Finally, we used redundancy analysis to identify the soil properties that significantly explained the differences in AMF communities across soil types. The results pointed out a tendency of AMF communities in roots to be closely related and different from those in the rhizosphere soil. The indicator species analyses revealed AMF associated with rhizosphere soil and the root habitat. Soil type also determined the distribution of AMF communities in soils, and this effect could not be attributed to a single soil characteristic, as at least three soil properties related to microbial activity, i.e., pH and levels of two micronutrients (Mn and Zn), played significant roles in triggering AMF populations. IMPORTANCE Communities of arbuscular mycorrhizal fungi (AMF) are main components of soil biota that can determine the productivity of ecosystems. These fungal assemblages vary across host plants and ecosystems, but the main ecological processes that shape the structures of these communities are still largely unknown. A field study in six different soil types from semiarid areas revealed that AMF communities are significantly influenced by habitat (soil versus roots) and soil type. In addition, three soil properties related to microbiological activity (i.e., pH and manganese and zinc levels) were the main factors triggering the distribution of AMF. These results contribute to a better understanding of the ecological factors that can shape AMF communities, an important soil microbial group that affects multiple ecosystem functions. PMID:27016567

Soil Characteristics Driving Arbuscular Mycorrhizal Fungal Communities in Semiarid Mediterranean Soils.

PubMed

Alguacil, Maria Del Mar; Torres, Maria Pilar; Montesinos-Navarro, Alicia; Roldán, Antonio

2016-06-01

We investigated communities of arbuscular mycorrhizal fungi (AMF) in the roots and the rhizosphere soil of Brachypodium retusum in six different natural soils under field conditions. We explored phylogenetic patterns of AMF composition using indicator species analyses to find AMF associated with a given habitat (root versus rhizosphere) or soil type. We tested whether the AMF characteristics of different habitats or contrasting soils were more closely related than expected by chance. Then we used principal-component analysis and multivariate analysis of variance to test for the relative contribution of each factor in explaining the variation in fungal community composition. Finally, we used redundancy analysis to identify the soil properties that significantly explained the differences in AMF communities across soil types. The results pointed out a tendency of AMF communities in roots to be closely related and different from those in the rhizosphere soil. The indicator species analyses revealed AMF associated with rhizosphere soil and the root habitat. Soil type also determined the distribution of AMF communities in soils, and this effect could not be attributed to a single soil characteristic, as at least three soil properties related to microbial activity, i.e., pH and levels of two micronutrients (Mn and Zn), played significant roles in triggering AMF populations. Communities of arbuscular mycorrhizal fungi (AMF) are main components of soil biota that can determine the productivity of ecosystems. These fungal assemblages vary across host plants and ecosystems, but the main ecological processes that shape the structures of these communities are still largely unknown. A field study in six different soil types from semiarid areas revealed that AMF communities are significantly influenced by habitat (soil versus roots) and soil type. In addition, three soil properties related to microbiological activity (i.e., pH and manganese and zinc levels) were the main factors triggering the distribution of AMF. These results contribute to a better understanding of the ecological factors that can shape AMF communities, an important soil microbial group that affects multiple ecosystem functions. Copyright © 2016, American Society for Microbiology. All Rights Reserved.

[Effect of soil phenolic acids on soil microbe of coal-mining depressed land after afforestation restoration by different tree species].

PubMed

Ji, Li; Yang, Li Xue

2017-12-01

Phenolic acids are one of the most important factors that influence microbial community structure. Investigating the dynamic changes of phenolic acids and their relationship with the microbial community structure in plantation soils with different tree species could contribute to better understanding and revealing the mechanisms of microbial community changes under afforestation restoration in coal-mining subsidence areas. In this study, plantations of three conifer and one deciduous species (Pinus koraiensis, Larix gmelinii, Pinus sylvestris var. mongolica, and Populus ussuriensis) were established on abandoned coal-mining subsidence areas in Baoshan District, Shuangyashan City. The contents of soil phenols, 11 types of phenolic acids, and microbial communities in all plots were determined. The results showed that the contents of soil complex phenol in plantations were significantly higher than that of abandoned land overall. Specifically, soils in larch and poplar plantations had higher contents of complex phenol, while soils in larch and Korean pine plantations had greater contents of total phenol. Moreover, soil in the P. koraiensis plantation had a higher content of water-soluble phenol compared with abandoned lands. The determination of 11 phenolic acids indicated that the contents of ferulic acid, abietic acid, β-sitosterol, oleanolic acid, shikimic acid, linoleic acid, and stearic acid were higher in plantation soils. Although soil phenol contents were not related with soil microbial biomass, the individual phenolic acids showed a significant relationship with soil microbes. Ferulic acid, abietic acid, and β-sitosterol showed significant promoting effects on soil microbial biomass, and they showed positive correlations with fungi and fungi/bacteria ratio. These three phenolic acids had higher contents in the poplar plantation, suggesting that poplar affo-restation had a beneficial effect on soil quality in coal-mining subsidence areas.

The application of permeable pavement with emphasis on successful design, water quality benefits, and identification of knowledge and data gaps : a summary report from the National Center for Sustainable Transportation.

DOT National Transportation Integrated Search

2015-06-01

Permeable pavement presented in this paper is defined as a type of pavement that has ability : to store stormwater until it infiltrates through the subgrade soil and can function as a : conventional pavement to carry specific traffic load and speed. ...

Soil Stabilization for Roadways and Airfields

DTIC Science & Technology

1987-07-01

the possibility of accidents and minimize health hazards. Al 1 Occupational Safety and Health Act requirements shall be observed. 8. Method of...v ELS Section Title Page G. Selection of Asphalt Type and Asphalt Content ........ . ... .. 86 H. Safety Precautions, Limitations of Use and...for Lime Fly Ash-Aggregate Base/Subbase Courses ...... ............. ?16 SECTION III - Typical Specification for Road - Mixed Asphalt fyr BasP and

Ichnofossils of the alluvial Willwood Formation (lower Eocene), Bighorn Basin, northwest Wyoming, U.S.A

USGS Publications Warehouse

Bown, T.M.; Kraus, M.J.

1983-01-01

The ichnofossil assemblage of the lower Eocene Willwood Formation consists of at least nine distinct endichnia that are preserved in full relief. Four forms (three ichnogenera and four ichnospecies) are new and represent fodinichnia and domichnia of oligochaete worms, an insect or spider, an unknown vertebrate (probably a mammal), and domichnia of an unidentified organism. Other potential trace makers of the ichnofauna include insects, mollusks, and decapods. In contrast to an Egyptian Oligocene fluvial ichnofauna produced largely by animals that burrowed in stream channel deposits, the Willwood assemblage is principally of flood-plain origin. Though the ichnofauna occurs in a variety of paleosol types, most of the fossils are restricted in distribution to specific sediment and soil types and, within paleosols, to specific identifiable horizons. This attribute will make them valuable indiced of paleoenvironment once they are better known in other ancient alluvial sequences. The environment suggested by the Willwood trace fossils (damp, but not wet soils with fluctuating water tables) is consistent with the warm temperate to subtropical (possibly monsoonal) conditions that are interpreted for the Willwood Formation by independent evidence of body fossils and paleopedology. ?? 1983.

Soil respiration and organic carbon dynamics with grassland conversions to woodlands in temperate china.

PubMed

Wang, Wei; Zeng, Wenjing; Chen, Weile; Zeng, Hui; Fang, Jingyun

2013-01-01

Soils are the largest terrestrial carbon store and soil respiration is the second-largest flux in ecosystem carbon cycling. Across China's temperate region, climatic changes and human activities have frequently caused the transformation of grasslands to woodlands. However, the effect of this transition on soil respiration and soil organic carbon (SOC) dynamics remains uncertain in this area. In this study, we measured in situ soil respiration and SOC storage over a two-year period (Jan. 2007-Dec. 2008) from five characteristic vegetation types in a forest-steppe ecotone of temperate China, including grassland (GR), shrubland (SH), as well as in evergreen coniferous (EC), deciduous coniferous (DC) and deciduous broadleaved forest (DB), to evaluate the changes of soil respiration and SOC storage with grassland conversions to diverse types of woodlands. Annual soil respiration increased by 3%, 6%, 14%, and 22% after the conversion from GR to EC, SH, DC, and DB, respectively. The variation in soil respiration among different vegetation types could be well explained by SOC and soil total nitrogen content. Despite higher soil respiration in woodlands, SOC storage and residence time increased in the upper 20 cm of soil. Our results suggest that the differences in soil environmental conditions, especially soil substrate availability, influenced the level of annual soil respiration produced by different vegetation types. Moreover, shifts from grassland to woody plant dominance resulted in increased SOC storage. Given the widespread increase in woody plant abundance caused by climate change and large-scale afforestation programs, the soils are expected to accumulate and store increased amounts of organic carbon in temperate areas of China.

Leaf and wood carbon isotope ratios, specific leaf areas and wood growth of Eucalyptus species across a rainfall gradient in Australia.

PubMed

Schulze, Ernst-Detlef; Turner, Neil C; Nicolle, Dean; Schumacher, Jens

2006-04-01

Leaves and samples of recent wood of Eucalyptus species were collected along a rainfall gradient parallel to the coast of Western Australia between Perth in the north and Walpole in the south and along a southwest to northeast transect from Walpole in southwestern Australia, to near Mount Olga in central Australia. The collection included 65 species of Eucalyptus sampled at 73 sites and many of the species were collected at several sites along the rainfall gradient. Specific leaf area (SLA) and isotopic ratio of 13C to 12C (delta 13C) of leaves that grew in 2002, and tree ring growth and delta 13C of individual cell layers of the wood were measured. Rainfall data were obtained from the Australian Bureau of Meteorology for 29 locations that represented one or a few closely located collection sites. Site-averaged data and species-specific values of delta 13C decreased with decreasing annual rainfall between 1200 and 300 mm at a rate of 1.63 per thousand per 1000 mm decrease in rainfall. Responses became variable in the low rainfall region (< 300 mm), with some species showing decreasing delta 13C with rainfall, whereas delta 13C increased or remained constant in other species. The range of delta 13C values in the low rainfall region was as large as the range observed at sites receiving > 300 mm of annual rainfall. Specific leaf area varied between 2 and 6 m2 kg(-1) and tended to increase with decreasing annual rainfall in some species, but not all, whereas delta 13C decreased with SLA. The relationship between delta 13C and SLA was highly species and soil-type specific. Leaf-area-based nitrogen (N) content varied between 2 and almost 6 g m(-2) and decreased with rainfall. Thus, thicker leaves were associated with higher N content and this compensated for the effect of drought on delta 13C. Nitrogen content was also related to soil type and species identity. Based on a linear mixed model, statistical analysis of the whole data set showed that 27% of the variation in delta 13C was associated with changes in SLA, 16% with soil type and only 1% with rainfall. Additionally, 21% was associated with species identity. For a subset of sites with > 300 mm rainfall, 43% of the variation was explained by SLA, 13% by soil type and only 3% by rainfall. The species effect decreased to 9% because there were fewer species in the subset of sites. The small effect of rainfall on delta 13C was further supported by a path analysis that yielded a standardized path coefficient of 0.38 for the effect of rainfall on SLA and -0.50 for the effect of SLA on delta 13C, but an insignificantly low standardized path coefficient of -0.05 for the direct effect of rainfall on delta 13C. Thus, in contrast to our hypothesis that delta 13C decreases with rainfall independent of soil type and species, we detected no statistically significant relationship between rainfall and delta 13C in leaves of trees growing at sites receiving < 300 mm of rainfall annually. Rainfall affected delta 13C indirectly through soil type (a surrogate for water-holding capacity) across the rainfall gradient. Annual tree rings are not clearly visible in evergreen Eucalyptus species, even in the seasonally cool climate of SW Australia. Generally, visible density transitions in the wood are related not to a strict annual cycle but to periods of growth associated mainly with rainfall. The relationship between delta 13C of leaves and the width of these stem increments was not statistically significant. Analysis of stem growth periods showed that delta 13C in wood responded to rainfall events, but carbohydrate storage and reallocation also affected the isotopic signature. Although delta 13C in wood of any one species varied over a range of 2 to 4 per thousand, there was a general relationship between delta 13C of the leaves and the annual range of delta 13C in wood. We conclude that species-specific traits are important in understanding the response of Eucalyptus to rainfall and that the diversity of the genus may reflect its response to the large climatic gradient in Australia and to the large annual and interannual variations in rainfall at any one location.

Contribution of fine tree roots to the silicon cycle in a temperate forest ecosystem developed on three soil types

NASA Astrophysics Data System (ADS)

Turpault, Marie-Pierre; Calvaruso, Christophe; Kirchen, Gil; Redon, Paul-Olivier; Cochet, Carine

2018-04-01

The role of forest vegetation in the silicon (Si) cycle has been widely examined. However, to date, little is known about the specific role of fine roots. The main objective of our study was to assess the influence of fine roots on the Si cycle in a temperate forest in north-eastern France. Silicon pools and fluxes in vegetal solid and solution phases were quantified within each ecosystem compartment, i.e. in the atmosphere, above-ground and below-ground tree tissues, forest floor and different soil layers, on three plots, each with different soil types, i.e. Dystric Cambisol (DC), Eutric Cambisol (EC) and Rendzic Leptosol (RL). In this study, we took advantage of a natural soil gradient, from shallow calcic soil to deep moderately acidic soil, with similar climates, atmospheric depositions, species compositions and management. Soil solutions were measured monthly for 4 years to study the seasonal dynamics of Si fluxes. A budget of dissolved Si (DSi) was also determined for the forest floor and soil layers. Our study highlighted the major role of fine roots in the Si cycle in forest ecosystems for all soil types. Due to the abundance of fine roots mainly in the superficial soil layers, their high Si concentration (equivalent to that of leaves and 2 orders higher than that of coarse roots) and their rapid turnover rate (approximately 1 year), the mean annual Si fluxes in fine roots in the three plots were 68 and 110 kg ha-1 yr-1 for the RL and the DC, respectively. The turnover rates of fine roots and leaves were approximately 71 and 28 % of the total Si taken up by trees each year, demonstrating the importance of biological recycling in the Si cycle in forests. Less than 1 % of the Si taken up by trees each year accumulated in the perennial tissues. This study also demonstrated the influence of soil type on the concentration of Si in the annual tissues and therefore on the Si fluxes in forests. The concentrations of Si in leaves and fine roots were approximately 1.5-2.0 times higher in the Si-rich DC compared to the Si-poor RL. In terms of the DSi budget, DSi production was large in the three plots in the forest floor (9.9 to 12.7 kg ha-1 yr-1), as well as in the superficial soil layer (5.3 to 14.5 kg ha-1 yr-1), and decreased with soil depth. An immobilization of DSi was even observed at 90 cm depth in plot DC (-1.7 kg ha-1 yr-1). The amount of Si leached from the soil profile was relatively low compared to the annual uptake by trees (13 % in plot DC to 29 % in plot RL). The monthly measurements demonstrated that the seasonal dynamics of the DSi budget were mainly linked to biological activity. Notably, the peak of dissolved Si production in the superficial soil layer occurred during winter and probably resulted from fine-root decomposition. Our study reveals that biological processes, particularly those involving fine roots, play a predominant role in the Si cycle in temperate forest ecosystems, while the geochemical processes appear to be limited.

Effect of soil type and soil management on soil physical, chemical and biological properties in commercial organic olive orchards in Southern Spain

NASA Astrophysics Data System (ADS)

Gomez, Jose Alfonso; Auxiliadora Soriano, Maria; Montes-Borrego, Miguel; Navas, Juan Antonio; Landa, Blanca B.

2014-05-01

One of the objectives of organic agriculture is to maintain and improve soil quality, while simultaneously producing an adequate yield. A key element in organic olive production is soil management, which properly implemented can optimize the use of rainfall water enhancing infiltration rates and controlling competition for soil water by weeds. There are different soil management strategies: eg. weed mowing (M), green manure with surface tillage in spring (T), or combination with animal grazing among the trees (G). That variability in soil management combined with the large variability in soil types on which organic olive trees are grown in Southern Spain, difficult the evaluation of the impact of different soil management on soil properties, and yield as well as its interpretation in terms of improvement of soil quality. This communications presents the results and analysis of soil physical, chemical and biological properties on 58 soils in Southern Spain during 2005 and 2006, and analyzed and evaluated in different studies since them. Those 58 soils were sampled in 46 certified commercial organic olive orchards with four soil types as well as 12 undisturbed areas with natural vegetation near the olive orchards. The four soil types considered were Eutric Regosol (RGeu, n= 16), Eutric Cambisol (CMeu, n=16), Calcaric Regosol (RGca, n=13 soils sampled) and Calcic Cambisol (CMcc), and the soil management systems (SMS) include were 10 light tillage (LT), 16 sheep grazing (G), 10 tillage (T), 10 mechanical mowing (M), and 12 undisturbed areas covered by natural vegetation (NV-C and NV-S). Our results indicate that soil management had a significant effect on olive yield as well as on key soil properties. Among these soil properties are physical ones, such as infiltration rate or bulk density, chemical ones, especially organic carbon concentration, and biological ones such as soil microbial respiration and bacterial community composition. Superimpose to that soil management induced variability, there was a strong interaction with soil type and climate conditions. There was also a relatively high variability within the same soil management and soil type class, indicating farm to farm variability in conditions and history of soil management. Based on this dataset two different approaches were taken to: A) evaluate the risk of soil degradation based on a limited set of soil properties, B) assess the effect of changes in SMS on soil biodiversity by using terminal restriction profiles (TRFs) derived from T-RFLP analysis of amplified 16S rDNA as. The results indicates the potential of both approaches to assess the risk of soil degradation (A) and the impact on soil biodiversity (B) upon appropriate benchmarking to characterize the interaction between soil management and soil type References Álvarez, S., Soriano, M.A., Landa, B.B., and Gómez, J.A. 2007. Soil properties in organic olive orchards compared with that in natural areas in a mountainous landscape in southern Spain. Soil Use Manage 23:404-416. Gómez, J.A., Álvarez, S., and Soriano, M.A. 2009. Development of a soil degradation assessment tool for organic olive groves in southern Spain. Catena 79:9-17. Landa, B.B., Montes-Borrego, M., Aranda, S., Soriano, M.A., Gómez, J.A., and Navas-Cortés, J.A. 2013. Soil factors involved in the diversity and structure of soil bacterial communities in commercial organic olive orchards in Southern Spain. Environmental Microbiology Reports (accepted) Soriano, M.A., Álvarez, S., Landa, B.B., and Gómez, J.A. 2013. Soil properties in organic olive orchards following different weed management in a rolling landscape of Andalusia, Spain. Renew Agr Food Syst (in press), doi:10.1017/S1742170512000361.

Effect of fertilizer formulation and bioaugmentation on biodegradation and leaching of crude oils and refined products in soils.

PubMed

Coulon, F; Brassington, K J; Bazin, R; Linnet, P E; Thomas, K A; Mitchell, T R; Lethbridge, G; Smith, J W N; Pollarda, S J T

2012-09-01

The effects of soil characteristics and oil types as well as the efficacy of two fertilizer formulations and three bioaugmentation packages in improving the bioremediation of oil-contaminated soils were assessed as a means of ex situ treatment selection and optimization through seven laboratory microcosm studies. The influence of bioremediation on leaching of oil from the soil was also investigated. The studies demonstrated the benefits ofbiostimulation to overcome nutrient limitation, as most of the soils were nutrient depleted. The application of both liquid and pelleted slow-release N and P fertilizers increased both the hydrocarbon biodegradation rates (by a factor of 1.4 to 2.9) and the percentage of hydrocarbon mass degraded (by > 30% after 12 weeks and 80% after 37 weeks), when compared with the unamended soils. Slow-release fertilizers can be particularly useful when multiple liquid applications are not practical or cost-effective. Bioaugmentation products containing inoculum plus fertilizer also increased biodegradation by 20% to 37% compared with unamended biotic controls; however, there was no clear evidence of additional benefits due to the inocula, compared with fertilizer alone. Therefore biostimulation is seen as the most cost-effective bioremediation strategy for contaminated soils with the levels of crude oil and refined products used in this study. However, site-specific considerations remain essential for establishing the treatability of oil-contaminated soils.

Root controls on soil microbial community structure in forest soils.

PubMed

Brant, Justin B; Myrold, David D; Sulzman, Elizabeth W

2006-07-01

We assessed microbial community composition as a function of altered above- and belowground inputs to soil in forest ecosystems of Oregon, Pennsylvania, and Hungary as part of a larger Detritus Input and Removal Treatment (DIRT) experiment. DIRT plots, which include root trenching, aboveground litter exclusion, and doubling of litter inputs, have been established in forested ecosystems in the US and Europe that vary with respect to dominant tree species, soil C content, N deposition rate, and soil type. This study used phospholipid fatty-acid (PLFA) analysis to examine changes in the soil microbial community size and composition in the mineral soil (0-10 cm) as a result of the DIRT treatments. At all sites, the PLFA profiles from the plots without roots were significantly different from all other treatments. PLFA analysis showed that the rootless plots generally contained larger quantities of actinomycete biomarkers and lower amounts of fungal biomarkers. At one of the sites in an old-growth coniferous forest, seasonal changes in PLFA profiles were also examined. Seasonal differences in soil microbial community composition were greater than treatment differences. Throughout the year, treatments without roots continued to have a different microbial community composition than the treatments with roots, although the specific PLFA biomarkers responsible for these differences varied by season. These data provide direct evidence that root C inputs exert a large control on microbial community composition in the three forested ecosystems studied.

Remote sensing as a tool for estimating soil erosion potential

NASA Technical Reports Server (NTRS)

Morris-Jones, D. R.; Morgan, K. M.; Kiefer, R. W.

1979-01-01

The Universal Soil Loss Equation is a frequently used methodology for estimating soil erosion potential. The Universal Soil Loss Equation requires a variety of types of geographic information (e.g. topographic slope, soil erodibility, land use, crop type, and soil conservation practice) in order to function. This information is traditionally gathered from topographic maps, soil surveys, field surveys, and interviews with farmers. Remote sensing data sources and interpretation techniques provide an alternative method for collecting information regarding land use, crop type, and soil conservation practice. Airphoto interpretation techniques and medium altitude, multi-date color and color infrared positive transparencies (70mm) were utilized in this study to determine their effectiveness for gathering the desired land use/land cover data. Successful results were obtained within the test site, a 6136 hectare watershed in Dane County, Wisconsin.

A persuasive concept of research-oriented teaching in Soil Biochemistry

NASA Astrophysics Data System (ADS)

Blagodatskaya, Evgenia; Kuzyakova, Irina

2013-04-01

One of the main problems of existing bachelor programs is disconnection of basic and experimental education: even during practical training the methods learned are not related to characterization of soil field experiments and observed soil processes. We introduce a multi-level research-oriented teaching system involving Bachelor students in four-semesters active study by integration the basic knowledge, experimental techniques, statistical approaches, project design and it's realization.The novelty of research-oriented teaching system is based 1) on linkage of ongoing experiment to the study of statistical methods and 2) on self-responsibility of students for interpretation of soil chemical and biochemical characteristics obtained in the very beginning of their study by analysing the set of soil samples allowing full-factorial data treatment. This experimental data set is related to specific soil stand and is used as a backbone of the teaching system accelerating the student's interest to soil studies and motivating them for application of basic knowledge from lecture courses. The multi-level system includes: 1) basic lecture course on soil biochemistry with analysis of research questions, 2) practical training course on laboratory analytics where small groups of students are responsible for analysis of soil samples related to the specific land-use/forest type/forest age; 3) training course on biotic (e.g. respiration) - abiotic (e.g. temperature, moisture, fire etc.) interactions in the same soil samples; 4) theoretical seminars where students present and make a first attempt to explain soil characteristics of various soil stands as affected by abiotic factors (first semester); 5) lecture and seminar course on soil statistics where students apply newly learned statistical methods to prove their conclusions and to find relationships between soil characteristics obtained during first semester; 6) seminar course on project design where students develop their scientific projects to study the uncertainties revealed in soil responses to abiotic factors (second and third semesters); 7) Lecture, seminar and training courses on estimation of active microbial biomass in soil where students realize their projects applying a new knowledge to the soils from the stands they are responsible for (fourth semester). Thus, during four semesters the students continuously combine the theoretical knowledge from the lectures with their own experimental experience, compare and discuss results of various groups during seminars and obtain the skills in project design. The successful application of research-oriented teaching system in University of Göttingen allowed each student the early-stage revealing knowledge gaps, accelerated their involvement in ongoing research projects, and motivated them to begin own scientific career.

Analysis of volatile organic compound from Elaeis guineensis inflorescences planted on different soil types in Malaysia

NASA Astrophysics Data System (ADS)

Muhamad Fahmi, M. H.; Ahmad Bukhary, A. K.; Norma, H.; Idris, A. B.

2016-11-01

The main attractant compound for Eleidobius kamerunicus to male spikelet Elaeis guineensis (oil palm) were determined by analyzing volatile organic compound extracted from E. guineenses inflorescences planted on different soil types namely peat soil, clay soil and sandy soil. Anthesizing male oil palm inflorescences were randomly choosen from palm aged between 4-5 years old age. Extraction of the volatiles from the oil palm inflorescences were performed by Accelerated Solvent Extraction method (ASE). The extracted volatile compound were determined by using gas chromatography-mass spectrometry. Out of ten identified compound, estragole was found to be a major compound in sandy soil (37.49%), clay soil (30.71%) and peat soil (27.79%). Other compound such as 9,12-octadecadieonic acid and n-hexadecanoic acid were found as major compound in peat soil (27.18%) and (7.45%); sandy soil (14.15 %) and (9.31%); and clay soil (30.23%) and (4.99%). This study shows that estragole was the predominant volatile compound detected in oil palm inflorescences with highly concentrated in palm planted in sandy soil type.

Prediction and inter-dependence of stock and change of soil quality, function and diversity at a national scale and implications for ecosystem services

NASA Astrophysics Data System (ADS)

Reynolds, B.; Emmett, B.; Spurgeon, D.; Rowe, E. C.; Mills, R.; Griffiths, R.; Jones, D.; Simfukwe, P.

2011-12-01

A soils monitoring programme which uses an ecosystem approach has been in place in Great Britain for 30 years.The findings from the latest survey in 2007 has been interpreted within a natural capital and ecosystem services context to assess the outcome of a range of policies to protect the natural environment and increase sustainability. Issues of interest included the impacts of declines in atmospheric deposition of acidity, nitrogen and metals, the benefits of agri-environment schemes and climate change on carbon storage in soils and soil biodiversity, and reduced fertiliser applications on eutrophication of soils and waters. Topsoil samples (0-15cm) were taken within 600 1km squares across the country stratified to cover all major habitat types. At the same time botanical surveys in permanent vegetation plots were recorded together with change in land use and management and stream and pond water quality and ecology. These data are used together with satellite images, digital cartography, and ancillary datasets to assess change in landcover for all of GB and upscaling of change data from the samples squares. Changes in topsoil were assessed in 1978, 1998 and again in 2007. An increase in pH but no change in soil carbon was observed between 1978 and 2007. Additional measures added in 1998 enabled a decline in Olsen-P,increase in C:N, decline in soil mesofauna diversity and decline in many metal concentrations to be identified over the last 10 years. In 2007, futher measurements were added to include carbon substrate utilisation, nitrogen mineralisation and bacterial diversity (fungi is in progress)enabling national maps to be created for the first time for these important soil parameters. Multi-variate statistics were used to explore the relationship between the different soil measures, the predictive capability of soil and vegetation type, and drivers of change to be identified. In addition, assigning measurements to specific functions which underpinned individual supporting and regulation services provided a method for assessing direction of change of a range of ecosystem services at national scale for the first time.

Uncertain soil moisture feedbacks in model projections of Sahel precipitation

NASA Astrophysics Data System (ADS)

Berg, Alexis; Lintner, Benjamin R.; Findell, Kirsten; Giannini, Alessandra

2017-06-01

Given the uncertainties in climate model projections of Sahel precipitation, at the northern edge of the West African Monsoon, understanding the factors governing projected precipitation changes in this semiarid region is crucial. This study investigates how long-term soil moisture changes projected under climate change may feedback on projected changes of Sahel rainfall, using simulations with and without soil moisture change from five climate models participating in the Global Land Atmosphere Coupling Experiment-Coupled Model Intercomparison Project phase 5 experiment. In four out of five models analyzed, soil moisture feedbacks significantly influence the projected West African precipitation response to warming; however, the sign of these feedbacks differs across the models. These results demonstrate that reducing uncertainties across model projections of the West African Monsoon requires, among other factors, improved mechanistic understanding and constraint of simulated land-atmosphere feedbacks, even at the large spatial scales considered here.