Advances in instrumentation at the W. M. Keck Observatory

NASA Astrophysics Data System (ADS)

Adkins, Sean M.; Armandroff, Taft E.; Johnson, James; Lewis, Hilton A.; Martin, Christopher; McLean, Ian S.; Wizinowich, Peter

2012-09-01

In this paper we describe both recently completed instrumentation projects and our current development efforts in terms of their role in the strategic plan, the key science areas they address, and their performance as measured or predicted. Projects reaching completion in 2012 include MOSFIRE, a near IR multi-object spectrograph, a laser guide star adaptive optics facility on the Keck I telescope, and an upgrade to the guide camera for the HIRES instrument on Keck I. Projects in development include a new seeing limited integral field spectrograph for the visible wavelength range called the Keck Cosmic Web Imager (KCWI), an upgrade to the telescope control systems on both Keck telescopes, a near-IR tip/tilt sensor for the Keck I adaptive optics system, and a new grating for the OSIRIS integral field spectrograph.

Hiss and snort call types of wild-living giraffes Giraffa camelopardalis: acoustic structure and context.

PubMed

Volodina, Elena V; Volodin, Ilya A; Chelysheva, Elena V; Frey, Roland

2018-01-09

Vocalization as part of vigilance behaviour is widespread across animal taxa, including ruminants. Calls of wild-living giraffes have never been recorded and spectrographically investigated. This study reports the acoustic structure of vigilance-related hiss and snort calls of wild-living giraffes Giraffa camelopardalis. The hiss and snort calls were emitted during five recording sessions produced by nine individual giraffes (8 adults and 1 subadult) in their natural environment in Namibia (3 individuals) and Kenya (6 individuals). These calls attended vigilance behaviour toward humans in hides or in vehicles and cheetahs as natural predators of giraffe young. This study provides spectrographic analyses of 22 hiss and 20 snort calls. The giraffe hisses were broadband vocalizations of an average duration of 0.72 s (from 0.24 to 1.04 s) and a peak frequency of 0.69 kHz. The giraffe snorts were broadband pulsed calls of an average duration of 0.28 s (from 0.13 to 0.55 s), a peak frequency at 0.20 kHz and comprised a prominent low-frequency pulsation of 23.7 pulses/s. The acoustic structure of giraffe hisses is reminiscent of vigilance-related hisses of musk deer Moschus moschiferus. Giraffe snorts differ from snorts of other ruminants by their prominent pulsed pattern.

Optical design of a versatile FIRST high-resolution near-IR spectrograph

NASA Astrophysics Data System (ADS)

Zhao, Bo; Ge, Jian

2012-09-01

We report the update optical design of a versatile FIRST high resolution near IR spectrograph, which is called Florida IR Silicon immersion grating spectromeTer (FIRST). This spectrograph uses cross-dispersed echelle design with white pupils and also takes advantage of the image slicing to increase the spectra resolution, while maintaining the instrument throughput. It is an extremely high dispersion R1.4 (blazed angle of 54.74°) silicon immersion grating with a 49 mm diameter pupil is used as the main disperser at 1.4μm -1.8μm to produce R=72,000 while an R4 echelle with the same pupil diameter produces R=60,000 at 0.8μm -1.35μm. Two cryogenic Volume Phase Holographic (VPH) gratings are used as cross-dispersers to allow simultaneous wavelength coverage of 0.8μm -1.8μm. The butterfly mirrors and dichroic beamsplitters make a compact folding system to record these two wavelength bands with a 2kx2k H2RG array in a single exposure. By inserting a mirror before the grating disperser (the SIG and the echelle), this spectrograph becomes a very efficient integral field 3-D imaging spectrograph with R=2,000-4,000 at 0.8μm-1.8μm by coupling a 10x10 telescope fiber bundle with the spectrograph. Details about the optical design and performance are reported.

Design of the fiber optic support system and fiber bundle accelerated life test for VIRUS

NASA Astrophysics Data System (ADS)

Soukup, Ian M.; Beno, Joseph H.; Hayes, Richard J.; Heisler, James T.; Mock, Jason R.; Mollison, Nicholas T.; Good, John M.; Hill, Gary J.; Vattiat, Brian L.; Murphy, Jeremy D.; Anderson, Seth C.; Bauer, Svend M.; Kelz, Andreas; Roth, Martin M.; Fahrenthold, Eric P.

2010-07-01

The quantity and length of optical fibers required for the Hobby-Eberly Telescope* Dark Energy eXperiment (HETDEX) create unique fiber handling challenges. For HETDEX‡, at least 33,600 fibers will transmit light from the focal surface of the telescope to an array of spectrographs making up the Visible Integral-Field Replicable Unit Spectrograph (VIRUS). Up to 96 Integral Field Unit (IFU) bundles, each containing 448 fibers, hang suspended from the telescope's moving tracker located more than 15 meters above the VIRUS instruments. A specialized mechanical system is being developed to support fiber optic assemblies onboard the telescope. The discrete behavior of 448 fibers within a conduit is also of primary concern. A life cycle test must be conducted to study fiber behavior and measure Focal Ratio Degradation (FRD) as a function of time. This paper focuses on the technical requirements and design of the HETDEX fiber optic support system, the electro-mechanical test apparatus for accelerated life testing of optical fiber assemblies. Results generated from the test will be of great interest to designers of robotic fiber handling systems for major telescopes. There is concern that friction, localized contact, entanglement, and excessive tension will be present within each IFU conduit and contribute to FRD. The test apparatus design utilizes six linear actuators to replicate the movement of the telescope over 65,000 accelerated cycles, simulating five years of actual operation.

Opto-mechanical design of an image slicer for the GRIS spectrograph at GREGOR

NASA Astrophysics Data System (ADS)

Vega Reyes, N.; Esteves, M. A.; Sánchez-Capuchino, J.; Salaun, Y.; López, R. L.; Gracia, F.; Estrada Herrera, P.; Grivel, C.; Vaz Cedillo, J. J.; Collados, M.

2016-07-01

An image slicer has been proposed for the Integral Field Spectrograph [1] of the 4-m European Solar Telescope (EST) [2] The image slicer for EST is called MuSICa (Multi-Slit Image slicer based on collimator-Camera) [3] and it is a telecentric system with diffraction limited optical quality offering the possibility to obtain high resolution Integral Field Solar Spectroscopy or Spectro-polarimetry by coupling a polarimeter after the generated slit (or slits). Considering the technical complexity of the proposed Integral Field Unit (IFU), a prototype has been designed for the GRIS spectrograph at GREGOR telescope at Teide Observatory (Tenerife), composed by the optical elements of the image slicer itself, a scanning system (to cover a larger field of view with sequential adjacent measurements) and an appropriate re-imaging system. All these subsystems are placed in a bench, specially designed to facilitate their alignment, integration and verification, and their easy installation in front of the spectrograph. This communication describes the opto-mechanical solution adopted to upgrade GRIS while ensuring repeatability between the observational modes, IFU and long-slit. Results from several tests which have been performed to validate the opto-mechanical prototypes are also presented.

Super-Comet or Big Asteroid Belt?

NASA Technical Reports Server (NTRS)

2005-01-01

[figure removed for brevity, see original site] Figure 1: Spectrograph of HD 69830

This graph of data from NASA's Spitzer Space Telescope demonstrates that the dust around a nearby star called HD 69830 (upper line) has a very similar composition to that of Comet Hale-Bopp. Spitzer spotted large amounts of this dust in the inner portion of the HD 69830 system.

The bumps and dips seen in these data, or spectra, represent the 'fingerprints' of various minerals. Spectra are created when an instrument called a spectrograph spreads light out into its basic parts, like a prism turning sunlight into a rainbow. These particular spectra reveal the presence of the silicate mineral called olivine, and more specifically, a type of olivine called forsterite, which is pictured in the inset box. Forsterite is a bright-green gem found on Earth, on the 'Green Sand Beach' of Hawaii among other places; and in space, in comets and asteroids.

Because the dust around HD 69830 has a very similar make-up to that of Comet Hale-Bopp, astronomers speculate that it might be coming from a giant comet nearly the size of Pluto. Such a comet may have been knocked into the inner solar system of HD 69830, where it is now leaving in its wake a trail of evaporated dust.

Nonetheless, astronomers say the odds that Spitzer has caught a 'super-comet' spiraling in toward its star - an unusual and relatively short-lived event - are slim. Instead, they favor the theory that the observed dust is actually the result of asteroids banging together in a massive asteroid belt.

The data of HD 69830's dust were taken by Spitzer's infrared spectrograph. The data of Comet Hale-Bopp were taken by the European Space Agency's Infrared Observatory Satellite. The picture of forsterite comes courtesy of Dr. George Rossman, California Institute of Technology, Pasadena.

Advances in instrumentation at the W. M. Keck Observatory

NASA Astrophysics Data System (ADS)

Adkins, Sean M.; Armandroff, Taft; Lewis, Hilton; Martin, Chris; McLean, Ian S.; Rockosi, Constance; Wizinowich, Peter

2010-07-01

In this paper we describe both recently completed instrumentation projects and our current development efforts in the context of the Observatory's science driven strategic plan which seeks to address key questions in observational astronomy for extra-galactic, Galactic, and planetary science with both seeing limited capabilities and high angular resolution adaptive optics capabilities. This paper will review recently completed projects as well as new instruments in development including MOSFIRE, a near IR multi-object spectrograph nearing completion, a new seeing limited integral field spectrograph for the visible wavelength range called the Keck Cosmic Web Imager, and the Keck Next Generation Adaptive Optics facility and its first light science instrument DAVINCI.

Slit device for FOCCoS-PFS-Subaru

NASA Astrophysics Data System (ADS)

de Oliveira, Antonio Cesar; Gunn, James E.; de Oliveira, Ligia Souza; Vital de Arruda, Marcio; Souza Marrara, Lucas; dos Santos, Leandro Henrique; Ferreira, Décio; dos Santos, Jesulino Bispo; Rosa, Josimar Aparecido; Ribeiro, Flavio Felipe; Vilaça, Rodrigo de Paiva; Verducci, Orlando; Sodré, Laerte; Oliveira, Claudia Mendes

2014-07-01

The Fiber Optical Cable and Connector System, "FOCCoS", subsystem of the Prime Focus Spectrograph, "PFS", for Subaru telescope, is responsible to feed four spectrographs with a set of optical fibers cables. The light injection for each spectrograph is assured by a convex curved slit with a linear array of 616 optical fibers. In this paper we present a design of a slit that ensures the right direction of the fibers by using masks of micro holes. This kind of mask is made by a technique called electroforming, which is able to produce a nickel plate with holes in a linear sequence. The precision error is around 1-μm in the diameter and 1-μm in the positions of the holes. This nickel plate may be produced with a thickness between 50 and 200 microns, so it may be very flexible. This flexibility allows the mask to be bent into the shape necessary for a curved slit. The concept requires two masks, which we call Front Mask, and Rear Mask, separated by a gap that defines the thickness of the slit. The pitch and the diameter of the holes define the linear geometry of the slit; the curvature of each mask defines the angular geometry of the slit. Obviously, this assembly must be mounted inside a structure rigid and strong enough to be supported inside the spectrograph. This structure must have a CTE optimized to avoid displacement of the fibers or increased FRD of the fibers when the device is submitted to temperatures around 3 degrees Celsius, the temperature of operation of the spectrograph. We have produced two models. Both are mounted inside a very compact Invar case, and both have their front surfaces covered by a dark composite, to reduce stray light. Furthermore, we have conducted experiments with two different internal structures to minimize effects caused by temperature gradients. This concept has several advantages relative to a design based on Vgrooves, which is the classical option. It is much easier and quicker to assemble, much cheaper, more accurate, easier to adjust; and it also offers the possibility of making a device much more strong, robust and completely miniaturized.

Current status of the HETDEX fiber optic support system

NASA Astrophysics Data System (ADS)

Good, John M.; Hill, Gary J.; Mollison, Nicholas T.; Vattiat, Brian L.; Murphy, Jeremy D.; Klez, Andreas; Roth, Martin M.; MacQueen, Phillip J.; Rafal, Marc D.; Savage, Richard D.; Smith, Michael P.; Bayless, Amanda J.

2008-07-01

The Hobby-Eberly Telescope Dark Energy eXperiment [HETDEX] will employ over 43,000 optical fibers to feed light to 192 Visible Integral-Field Replicable Unit Spectrographs [VIRUS]. Each VIRUS instrument is fed by 224 fibers. To reduce cost, the spectrographs are combined into pairs; thus, two bundles of 224 fibers are combined into a single Integral Field Unit [IFU] of 448 fibers. On the input end the fibers are arranged in a square 'dense-pack' array at the HET focal surface. At the output end the IFU terminates in two separate linear arrays which provide entry slits for each spectrometer unit. The IFU lengths must be kept to an absolute minimum to mitigate losses; however, consideration of overall project cost and duration of the science mission have resulted in the generation of two competing concepts. Multiple axes of motion are imposed on the IFUs as they span the shortest distance from the focal surface to each VIRUS unit. Arranging and supporting 96 IFUs, that have a total mass over 450 kg, in a manner that is compatible with these complex translations, together with the management of accompanying forces on the tracking mechanism of the HET, presents a significant technical challenge, which is further compounded by wind buffeting. The longer IFU concept is favored due to overall project cost, but requires tests to assure that the fibers can withstand forces associated with a height differential of 16.25 meters without FRD losses or breakage.

Combining laser frequency combs and iodine cell calibration techniques for Doppler detection of exoplanets

NASA Astrophysics Data System (ADS)

Cahoy, Kerri; Fischer, Debra; Spronck, Julien; DeMille, David

2010-07-01

Exoplanets can be detected from a time series of stellar spectra by looking for small, periodic shifts in the absorption features that are consistent with Doppler shifts caused by the presence of an exoplanet, or multiple exoplanets, in the system. While hundreds of large exoplanets have already been discovered with the Doppler technique (also called radial velocity), our goal is to improve the measurement precision so that many Earth-like planets can be detected. The smaller mass and longer period of true Earth analogues require the ability to detect a reflex velocity of ~10 cm/s over long time periods. Currently, typical astronomical spectrographs calibrate using either Iodine absorptive cells or Thorium Argon lamps and achieve ~10 m/s precision, with the most stable spectrographs pushing down to ~2 m/s. High velocity precision is currently achieved at HARPS by controlling the thermal and pressure environment of the spectrograph. These environmental controls increase the cost of the spectrograph, and it is not feasible to simply retrofit existing spectrometers. We propose a fiber-fed high precision spectrograph design that combines the existing ~5000-6000 A Iodine calibration system with a high-precision Laser Frequency Comb (LFC) system from ~6000-7000 A that just meets the redward side of the Iodine lines. The scientific motivation for such a system includes: a 1000 A span in the red is currently achievable with LFC systems, combining the two calibration methods increases the wavelength range by a factor of two, and moving redward decreases the "noise" from starspots. The proposed LFC system design employs a fiber laser, tunable serial Fabry-Perot cavity filters to match the resolution of the LFC system to that of standard astronomical spectrographs, and terminal ultrasonic vibration of the multimode fiber for a stable point spread function.

MEGARA: large pupil element tests and performance

NASA Astrophysics Data System (ADS)

Martínez-Delgado, I.; Sánchez-Blanco, E.; Pérez-Calpena, A.; García-Vargas, M. L.; Maldonado, X. M.; Gil de Paz, A.; Carrasco, E.; Gallego, J.; Iglesias-Páramo, J.; Sánchez-Moreno, F. M.

2016-07-01

MEGARA is a third generation spectrograph for the Spanish 10.4m telescope (GTC) providing two observing modes: a large central Integral Field Unit (IFU), called the Large Compact Bundle (LCB), covering a FOV of 12.5 × 11.3 arcsec2, and a Multi-Object Spectrograph (MOS) with a FOV of 3.5 × 3.5 arcmin2. MEGARA will observe the whole visible range from 3650A to 10000A allowing different spectral resolutions (low, medium and high) with R = 6000, 11000 and 18000 respectively. The dispersive elements are placed at the spectrograph pupil position in the path of the collimated beam and they are composed of a set of volume phase hologram gratings (VPHs) sandwiched between two flat windows and coupled in addition to two prisms in the case of the medium- and high-resolution units. We will describe the tests and setups developed to check the requirements of all units, as well as the obtained performance at laboratory

KSC-2012-5328

NASA Image and Video Library

2012-09-13

VANDENBERG AFB, Calif. – Technicians perform a fit check on an Orbital Sciences Pegasus rocket as the launcher is processed for the Interface Region Imaging Spectrograph mission known as IRIS. The technicians are attaching the portion of the Pegasus that joins the wing to the fuselage, a piece called a fillet. Photo credit: VAFB/Randy Beaudoin

KSC-2012-5326

NASA Image and Video Library

2012-09-13

VANDENBERG AFB, Calif. – Technicians perform a fit check on an Orbital Sciences Pegasus rocket as the launcher is processed for the Interface Region Imaging Spectrograph mission known as IRIS. The technicians are attaching the portion of the Pegasus that joins the wing to the fuselage, a piece called a fillet. Photo credit: VAFB/Randy Beaudoin

KSC-2012-5327

NASA Image and Video Library

2012-09-13

VANDENBERG AFB, Calif. – Technicians perform a fit check on an Orbital Sciences Pegasus rocket as the launcher is processed for the Interface Region Imaging Spectrograph mission known as IRIS. The technicians are attaching the portion of the Pegasus that joins the wing to the fuselage, a piece called a fillet. Photo credit: VAFB/Randy Beaudoin

KSC-2012-5325

NASA Image and Video Library

2012-09-13

VANDENBERG AFB, Calif. – Technicians perform a fit check on an Orbital Sciences Pegasus rocket as the launcher is processed for the Interface Region Imaging Spectrograph mission known as IRIS. The technicians are attaching the portion of the Pegasus that joins the wing to the fuselage, a piece called a fillet. Photo credit: VAFB/Randy Beaudoin

A Spectrographically Grounded Scale for Evaluating Reading Expressiveness

ERIC Educational Resources Information Center

Benjamin, Rebekah George; Schwanenflugel, Paula J.; Meisinger, Elizabeth B.; Groff, Carolyn; Kuhn, Melanie R.; Steiner, Lilly

2013-01-01

This study evaluated the validity of a new scale for assessing children's reading fluency skill called the Comprehensive Oral Reading Fluency Scale (CORFS). The CORFS consists of two subscales that capture key elements of the Kuhn, Schwanenflugel, and Meisinger (2010) definition of reading fluency: reading expression, reading rate, and accuracy.…

PESO - The Python Based Control System of the Ondrejov 2m Telescope

NASA Astrophysics Data System (ADS)

Skoda, P.; Fuchs, J.; Honsa, J.

2005-12-01

Python has been gaining a good reputation and respectability in many areas of software development. We have chosen Python after getting the new CCD detector for the coudé spectrograph of Ondřejov observatory 2m telescope. The VersArray detector from Roper Scientific came only with the closed source library PVCAM of low-level camera control functions for Linux, so we had to write the whole astronomical data acquisition system from scratch and integrate it with the current spectrograph and telescope control systems. The final result of our effort, PESO (Python Exposure System for Ondřejov) is a highly comfortable GUI-based environment allowing the observer to change the spectrograph configuration, choose the detector acquisition mode, select the exposure parameters, and monitor the exposure progress. All of the relevant information from the control computers is written into the FITS headers by the PyFITS module, and the acquired CCD frame is immediately displayed in an SAO DS9 window using XPA calls. The GTK-based front end design was drawn in the Glade visual development tool, giving the shape and position of all widgets in single XML file, which is used in Python by a simple call of the PyGlade module. We describe our experience with the design and implementation of PESO, stressing the easiness of quick changes of the GUI, together with the capability of separate testing of every module using the Python debugger, IPython.

The VIRUS data reduction pipeline

NASA Astrophysics Data System (ADS)

Goessl, Claus A.; Drory, Niv; Relke, Helena; Gebhardt, Karl; Grupp, Frank; Hill, Gary; Hopp, Ulrich; Köhler, Ralf; MacQueen, Phillip

2006-06-01

The Hobby-Eberly Telescope Dark Energy Experiment (HETDEX) will measure baryonic acoustic oscillations, first discovered in the Cosmic Microwave Background (CMB), to constrain the nature of dark energy by performing a blind search for Ly-α emitting galaxies within a 200 deg2 field and a redshift bin of 1.8 < z < 3.7. This will be achieved by VIRUS, a wide field, low resolution, 145 IFU spectrograph. The data reduction pipeline will have to extract ~ 35.000 spectra per exposure (~5 million per night, i.e. 500 million in total), perform an astrometric, photometric, and wavelength calibration, and find and classify objects in the spectra fully automatically. We will describe our ideas how to achieve this goal.

GESE: a small UV space telescope to conduct a large spectroscopic survey of z˜1 Galaxies

NASA Astrophysics Data System (ADS)

Heap, Sara R.; Gong, Qian; Hull, Tony; Kruk, Jeffrey; Purves, Lloyd

2014-11-01

One of the key goals of NASA's astrophysics program is to answer the question: How did galaxies evolve into the spirals and elliptical galaxies that we see today? We describe a space mission concept called Galaxy Evolution Spectroscopic Explorer (GESE) to address this question by making a large spectroscopic survey of galaxies at a redshift, z˜1 (look-back time of ˜8 billion years). GESE is a 1.5-m space telescope with an ultraviolet (UV) multi-object slit spectrograph that can obtain spectra of hundreds of galaxies per exposure. The spectrograph covers the spectral range, 0.2-0.4 μm at a spectral resolving power, R˜500. This observed spectral range corresponds to 0.1-0.2 μm as emitted by a galaxy at a redshift, z=1. The mission concept takes advantage of two new technological advances: (1) light-weighted, wide-field telescope mirrors, and (2) the Next-Generation MicroShutter Array (NG-MSA) to be used as a slit generator in the multi-object slit spectrograph.

GESE: A Small UV Space Telescope to Conduct a Large Spectroscopic Survey of Z-1 Galaxies

NASA Technical Reports Server (NTRS)

Heap, Sara R.; Gong, Qian; Hull, Tony; Kruk, Jeffrey; Purves, Lloyd

2013-01-01

One of the key goals of NASA's astrophysics program is to answer the question: How did galaxies evolve into the spirals and elliptical galaxies that we see today? We describe a space mission concept called Galaxy Evolution Spectroscopic Explorer (GESE) to address this question by making a large spectroscopic survey of galaxies at a redshift, z is approximately 1 (look-back time of approximately 8 billion years). GESE is a 1.5-meter space telescope with an ultraviolet (UV) multi-object slit spectrograph that can obtain spectra of hundreds of galaxies per exposure. The spectrograph covers the spectral range, 0.2-0.4 micrometers at a spectral resolving power, R approximately 500. This observed spectral range corresponds to 0.1-0.2 micrometers as emitted by a galaxy at a redshift, z=1. The mission concept takes advantage of two new technological advances: (1) light-weighted, wide-field telescope mirrors, and (2) the Next- Generation MicroShutter Array (NG-MSA) to be used as a slit generator in the multi-object slit spectrograph.

New developments in instrumentation at the W. M. Keck Observatory

NASA Astrophysics Data System (ADS)

Adkins, Sean M.; Armandroff, Taft E.; Fitzgerald, Michael P.; Johnson, James; Larkin, James E.; Lewis, Hilton A.; Martin, Christopher; Matthews, Keith Y.; Prochaska, J. X.; Wizinowich, Peter

2014-07-01

The W. M. Keck Observatory continues to develop new capabilities in support of our science driven strategic plan which emphasizes leadership in key areas of observational astronomy. This leadership is a key component of the scientific productivity of our observing community and depends on our ability to develop new instrumentation, upgrades to existing instrumentation, and upgrades to supporting infrastructure at the observatory. In this paper we describe the as measured performance of projects completed in 2014 and the expected performance of projects currently in the development or construction phases. Projects reaching completion in 2014 include a near-IR tip/tilt sensor for the Keck I adaptive optics system, a new center launch system for the Keck II laser guide star facility, and NIRES, a near-IR Echelle spectrograph for the Keck II telescope. Projects in development include a new seeing limited integral field spectrograph for the visible wavelength range called the Keck Cosmic Web Imager, a deployable tertiary mirror for the Keck I telescope, upgrades to the spectrograph detector and the imager of the OSIRIS instrument, and an upgrade to the telescope control systems on both Keck telescopes.

Focal ratio degradation and transmission in VIRUS-P optical fibers

NASA Astrophysics Data System (ADS)

Murphy, Jeremy D.; MacQueen, Phillip J.; Hill, Gary J.; Grupp, Frank; Kelz, Andreas; Palunas, Povilas; Roth, Martin; Fry, Alexander

2008-07-01

We have conducted extensive tests of both transmission and focal ratio degradation (FRD) on two integral field units currently in use on the VIRUS-P integral field spectrograph. VIRUS-P is a prototype for the VIRUS instrument proposed for the Hobby-Eberly Telescope at McDonald Observatory. All tests have been conducted at an input f-ratio of F/3.65 and with an 18% central obscuration in order to simulate optical conditions on the HET. Transmission measurements were conducted with narrow-band interference filters (FWHM: 10 nm) at 10 discrete wavelengths (337 to 600 nm), while FRD tests were made at 365 nm, 400 nm and 600 nm. The influence of wavelength, end immersion, fiber type and length on both FRD and transmission is explored. Most notably, we find no wavelength dependence on FRD down to 365 nm. All fibers tested are within the VIRUS instrument specifications for both FRD and transmission. We present the details of our differential FRD testing method and explain a simple and robust technique of aligning the test bench and optical fiber axes to within +/-0.1 degrees.

Spectroscopic classification of AT 2017byx as a Type Ia Supernova

NASA Astrophysics Data System (ADS)

Vinko, J.; Wheeler, J. C.; Sarneczky, K.; Szakats, R.; Szalai, T.; Szekely, P.; HETDEX Collaboration

2017-05-01

During the commissioning phase of the Hobby-Eberly Telescope Dark Energy Experiment (HETDEX) survey we observed AT 2017byx (ATLAS17bla, PS17bve) at R.A.=14:17:48.36 Dec.=+52:41:54.6 with the Visible Integral-field Replicable Unit Spectrograph (VIRUS) at McDonald Observatory on 2017-04-28.2 UT. The spectrum (range between 3500 and 5500 Angstroms) indicates that AT 2017byx is a Type Ia supernova.

VizieR Online Data Catalog: The MASSIVE survey. VI. Warm ionized gas. (Pandya+, 2017)

NASA Astrophysics Data System (ADS)

Pandya, V.; Greene, J. E.; Ma, C.-P.; Veale, M.; Ene, I.; Davis, T. A.; Blakeslee, J. P.; Goulding, A. D.; McConnell, N. J.; Nyland, K.; Thomas, J.

2017-10-01

This paper is based on integral-field spectra obtained with the Mitchell Spectrograph (formerly VIRUS-P) on the 2.7m Harlan J. Smith Telescope at McDonald Observatory. The spectra cover the wavelength range from ~3500Å to ~5800Å. We generally have three dithered pointings for a total of 738 spectra per galaxy. See the MASSIVE survey description in Paper I: Ma+, 2014, J/ApJ/795/158 (1 data file).

A Fine-Tooth Comb to Measure the Accelerating Universe

NASA Astrophysics Data System (ADS)

2008-09-01

Astronomical instruments needed to answer crucial questions, such as the search for Earth-like planets or the way the Universe expands, have come a step closer with the first demonstration at the telescope of a new calibration system for precise spectrographs. The method uses a Nobel Prize-winning technology called a 'laser frequency comb', and is published in this week's issue of Science. Uncovering the disc ESO PR Photo 26a/08 A Laser Comb for Astronomy "It looks as if we are on the way to fulfil one of astronomers' dreams," says team member Theodor Hänsch, director at the Max Planck Institute for Quantum Optics (MPQ) in Germany. Hänsch, together with John Hall, was awarded the 2005 Nobel Prize in Physics for work including the frequency comb technique. Astronomers use instruments called spectrographs to spread the light from celestial objects into its component colours, or frequencies, in the same way water droplets create a rainbow from sunlight. They can then measure the velocities of stars, galaxies and quasars, search for planets around other stars, or study the expansion of the Universe. A spectrograph must be accurately calibrated so that the frequencies of light can be correctly measured. This is similar to how we need accurate rulers to measure lengths correctly. In the present case, a laser provides a sort of ruler, for measuring colours rather than distances, with an extremely accurate and fine grid. New, extremely precise spectrographs will be needed in experiments planned for the future European Extremely Large Telescope (E-ELT), which is being designed by ESO, the European Southern Observatory. These new spectrographs will need to be calibrated with even more accurate 'rulers'. In fact, they must be accurate to about one part in 30 billions - a feat equivalent to measuring the circumference of the Earth to about a millimetre! "We'll need something beyond what current technology can offer, and that's where the laser frequency comb comes in. It is worth recalling that the kind of precision required, 1 cm/s, corresponds, on the focal plane of a typical high-resolution spectrograph, to a shift of a few tenths of a nanometre, that is, the size of some molecules," explains PhD student and team member Constanza Araujo-Hauck from ESO. The new calibration technique comes from the combination of astronomy and quantum optics, in a collaboration between researchers at ESO and the Max Planck Institute for Quantum Optics. It uses ultra-short pulses of laser light to create a 'frequency comb' - light at many frequencies separated by a constant interval - to create just the kind of precise 'ruler' needed to calibrate a spectrograph. After successful tests in the MPQ laboratory in 2007, the team have successfully tested a prototype device using the laser comb at the VTT (Vacuum Tower Telescope) solar telescope in Tenerife, on 8 March 2008, measuring the spectrum of the Sun in infrared light. The results are already impressive, and the technique promises to achieve the accuracy needed to study these big astronomical questions. "In our tests in Tenerife, we have already achieved beyond state-of-the-art accuracy. Now we are going to make the system more versatile, and develop it even further," says team member Tilo Steinmetz, from Menlo Systems GmbH, a spin-off company from the Max Planck Institute, which was founded to commercialise the frequency comb technique. Having tested the technique on a solar telescope, a new version of the system is now being built for the HARPS planet-finder instrument on ESO's 3.6-metre telescope at La Silla in Chile, before being considered for future generations of instruments. One of the ambitious project to be realised with the E-ELT, called CODEX, aims to measure the recently discovered acceleration of the universe directly, by following the velocities of distant galaxies and quasars over a 20-year period. This would let astronomers test Einstein's general relativity and the nature of the recently discovered, and mysterious, dark energy. "We have to measure the movement of these distant galaxies to a few centimetres per second, and follow this over decades. These speeds are barely faster than a snail's pace, and the laser frequency comb is absolutely crucial for this," says team member Antonio Manescau, from ESO. Astronomers also use spectrographs to hunt for planets around other stars, by watching for subtle movements of the star as the planet orbits it. To be detected with current technology, these planets must be relatively massive or close to the star, compared to Earth. A more precise spectrograph will let astronomers find planets, with characteristics similar to Earth's.

NIRPS: an adaptive-optics assisted radial velocity spectrograph to chase exoplanets around M-stars

NASA Astrophysics Data System (ADS)

Wildi, F.; Blind, N.; Reshetov, V.; Hernandez, O.; Genolet, L.; Conod, U.; Sordet, M.; Segovilla, A.; Rasilla, J. L.; Brousseau, D.; Thibault, S.; Delabre, B.; Bandy, T.; Sarajlic, M.; Cabral, A.; Bovay, S.; Vallée, Ph.; Bouchy, F.; Doyon, R.; Artigau, E.; Pepe, F.; Hagelberg, J.; Melo, C.; Delfosse, X.; Figueira, P.; Santos, N. C.; González Hernández, J. I.; de Medeiros, J. R.; Rebolo, R.; Broeg, Ch.; Benz, W.; Boisse, I.; Malo, L.; Käufl, U.; Saddlemyer, L.

2017-09-01

Since 1st light in 2002, HARPS has been setting the standard in the exo-planet detection by radial velocity (RV) measurements[1]. Based on this experience, our consortium is developing a high accuracy near-infrared RV spectrograph covering YJH bands to detect and characterize low-mass planets in the habitable zone of M dwarfs. It will allow RV measurements at the 1-m/s level and will look for habitable planets around M- type stars by following up the candidates found by the upcoming space missions TESS, CHEOPS and later PLATO. NIRPS and HARPS, working simultaneously on the ESO 3.6m are bound to become a single powerful high-resolution, high-fidelity spectrograph covering from 0.4 to 1.8 micron. NIRPS will complement HARPS in validating earth-like planets found around G and K-type stars whose signal is at the same order of magnitude than the stellar noise. Because at equal resolving power the overall dimensions of a spectrograph vary linearly with the input beam étendue, spectrograph designed for seeing-limited observations are large and expensive. NIRPS will use a high order adaptive optics system to couple the starlight into a fiber corresponding to 0.4" on the sky as efficiently or better than HARPS or ESPRESSO couple the light 0.9" fiber. This allows the spectrograph to be very compact, more thermally stable and less costly. Using a custom tan(θ)=4 dispersion grating in combination with a start-of-the-art Hawaii4RG detector makes NIRPS very efficient with complete coverage of the YJH bands at 110'000 resolution. NIRPS works in a regime that is in-between the usual multi-mode (MM) where 1000's of modes propagates in the fiber and the single mode well suited for perfect optical systems. This regime called few-modes regime is prone to modal noise- Results from a significant R and D effort made to characterize and circumvent the modal noise show that this contribution to the performance budget shall not preclude the RV performance to be achieved.

Fiber Scrambling for Extreme Doppler Precision

NASA Astrophysics Data System (ADS)

Spronck, Julien; Kaplan, Z.; Fischer, D.

2011-09-01

The detection of Earth-like exoplanets with the radial velocity method requires extreme Doppler precision and long-term stability in order to measure tiny reflex velocities in the host star. Recent planet searches have led to the detection of so called “super-Earths” (up to a few Earth masses) that induce radial velocity changes of about 1 m/s. However, the detection of true Earth analogs requires a precision of 10 cm/s. One of the factors limiting Doppler precision is variation in the Point Spread Function (PSF) from observation to observation due to changes in the illumination of the slit and spectrograph optics. Thus, this stability has become a focus of current instrumentation work. Fiber optics have been used since the 1980’s to couple telescopes to high-precision spectrographs, initially for simpler mechanical design and control. However, fiber optics are also naturally efficient scramblers. Scrambling refers to a fiber’s ability to produce an output beam independent of input. Our research is focused on understanding the scrambling properties of fibers with different geometries (circular, square, octagonal), different lengths and fiber sizes. Another important parameter when it comes to fibers is the so-called focal ratio degradation (FRD), which accounts for a different (faster) focal ratio after the fiber than the one sent into the fiber. In this paper, we will present new insight on fiber scrambling, FRD and what we call fiber personality, which describes differing behaviors for supposedly identical fiber.

Modelling space-based integral-field spectrographs and their application to Type Ia supernova cosmology

NASA Astrophysics Data System (ADS)

Shukla, Hemant; Bonissent, Alain

2017-04-01

We present the parameterized simulation of an integral-field unit (IFU) slicer spectrograph and its applications in spectroscopic studies, namely, for probing dark energy with type Ia supernovae. The simulation suite is called the fast-slicer IFU simulator (FISim). The data flow of FISim realistically models the optics of the IFU along with the propagation effects, including cosmological, zodiacal, instrumentation and detector effects. FISim simulates the spectrum extraction by computing the error matrix on the extracted spectrum. The applications for Type Ia supernova spectroscopy are used to establish the efficacy of the simulator in exploring the wider parametric space, in order to optimize the science and mission requirements. The input spectral models utilize the observables such as the optical depth and velocity of the Si II absorption feature in the supernova spectrum as the measured parameters for various studies. Using FISim, we introduce a mechanism for preserving the complete state of a system, called the partial p/partial f matrix, which allows for compression, reconstruction and spectrum extraction, we introduce a novel and efficient method for spectrum extraction, called super-optimal spectrum extraction, and we conduct various studies such as the optimal point spread function, optimal resolution, parameter estimation, etc. We demonstrate that for space-based telescopes, the optimal resolution lies in the region near R ˜ 117 for read noise of 1 e- and 7 e- using a 400 km s-1 error threshold on the Si II velocity.

Optical design for CETUS: a wide-field 1.5m aperture UV payload being studied for a NASA probe class mission study

NASA Astrophysics Data System (ADS)

Woodruff, Robert A.; Hull, Tony; Heap, Sara R.; Danchi, William; Kendrick, Stephen E.; Purves, Lloyd

2017-09-01

We are developing a NASA Headquarters selected Probe-class mission concept called the Cosmic Evolution Through UV Spectroscopy (CETUS) mission, which includes a 1.5-m aperture diameter large field-of-view (FOV) telescope optimized for UV imaging, multi-object spectroscopy, and point-source spectroscopy. The optical system includes a Three Mirror Anastigmatic (TMA) telescope that simultaneously feeds three separate scientific instruments: the near-UV (NUV) Multi-Object Spectrograph (MOS) with a next-generation Micro-Shutter Array (MSA); the two-channel camera covering the far-UV (FUV) and NUV spectrum; and the point-source spectrograph covering the FUV and NUV region with selectable R 40,000 echelle modes and R 2,000 first order modes. The optical system includes fine guidance sensors, wavefront sensing, and spectral and flat-field in-flight calibration sources. This paper will describe the current optical design of CETUS.

Optical design for CETUS: a wide-field 1.5m aperture UV payload being studied for a NASA probe class mission study

NASA Astrophysics Data System (ADS)

Woodruff, Robert; Robert Woodruff, Goddard Space Flight Center, Kendrick Optical Consulting

2018-01-01

We are developing a NASA Headquarters selected Probe-class mission concept called the Cosmic Evolution Through UV Spectroscopy (CETUS) mission, which includes a 1.5-m aperture diameter large field-of-view (FOV) telescope optimized for UV imaging, multi-object spectroscopy, and point-source spectroscopy. The optical system includes a Three Mirror Anastigmatic (TMA) telescope that simultaneously feeds three separate scientific instruments: the near-UV (NUV) Multi-Object Spectrograph (MOS) with a next-generation Micro-Shutter Array (MSA); the two-channel camera covering the far-UV (FUV) and NUV spectrum; and the point-source spectrograph covering the FUV and NUV region with selectable R~ 40,000 echelle modes and R~ 2,000 first order modes. The optical system includes fine guidance sensors, wavefront sensing, and spectral and flat-field in-flight calibration sources. This paper will describe the current optical design of CETUS.

On-sky calibration performance of a monolithic Michelson interferometer filtered source

NASA Astrophysics Data System (ADS)

Ge, Jian; Ma, Bo; Powell, Scott; Varosi, Frank; Schofield, Sidney; Grieves, Nolan; Liu, Jian

2014-07-01

In the new era of searching for Earth-like planets, new generation radial velocity (RV) high resolution spectrographs requires ~0.1 m/s Doppler calibration accuracy in the visible band and a similar calibration precision in the near infrared. The patented stable monolithic Michelson interferometer filtered source called the Sine source emerges as a very promising calibration device. This Sine source has the potential of covering the practical working wavelengths (~0.38- 2.5 μm) for Doppler measurements with high resolution optical and near infrared high resolution spectrographs at the ground-based telescopes. The single frame calibration precision can reach < 0.1 m/s for the state of the art spectrographs, and it can be easily designed to match the intrinsic sensitivities of future Doppler instruments. The Sine source also has the great practical advantages in compact (portable) size and low cost. Here we report early results from on-sky calibration of a Sine source measured with two state-of-the-art TOU optical high resolution spectrograph (R=100,000, 0.38-0.9 microns) and FIRST near infrared spectrograph (R=50,000, 0.8-1.8 microns) at a 2 meter robotic telescope at Fairborn Observatory in Arizona. The results with the TOU spectrograph monitoring over seven days show that the Sine source has produced ~3 times better calibration precision than the ThAr calibration (RMS = 2.7m/s vs. 7.4m/s) at 0.49-0.62 microns where calibration data have been processed by our preliminary data pipeline and ~1.4 times better than the iodine absorption spectra (RMS=3.6 m/s) at the same wavelength region. As both ThAr and Iodine have reached sub m/s calibration accuracy with existing Doppler instruments (such as HARPS and HIRES), it is likely that the sine source would provide similar improvement once a better data pipeline and an upgraded version of a Sine source are developed. It is totally possible to reach ~0.1 m/s in the optical wavelength region. In addition, this Sine source offers potential very accurate calibration at 0.7-0.9 μm where ThAr lines are totally dominated by strong and saturated Argon lines and the ThAr calibration data are nearly useless. The early measurements with the FIRST near infrared spectrograph show that this Sine source produces very homogenous fringe modulations over 0.8-1.8 μm which can potentially provide better precision than the UrNe lamp for instrument drift measurements.

Integration, commissioning, and performance of the UK FMOS spectrograph

NASA Astrophysics Data System (ADS)

Dalton, Gavin B.; Lewis, Ian J.; Tosh, Ian A. J.; Blackburn, Colin; Bonfield, David G.; Brooks, Charles B.; Holmes, Alan R.; Lee, Hanshin; Froud, Tim R.; Akiyama, Masayuki; Tamura, Naoyuki; Takato, Naruhisa

2008-07-01

The UK FMOS spectrograph forms part of Subaru's FMOS multi-object infrared spectroscopy facility. The spectrograph was shipped to Hilo in component form in August of 2007. We describe the integration sequence for the spectrograph, the results of cooldown tests using a new chiller unit fitted to the spectrograph at the telescope, and alignment tests of the spectrograph, gratings and OH-suppression masks. We present the first-light observations for the spectrograph from May 2008.

BATMAN: a DMD-based MOS demonstrator on Galileo Telescope

NASA Astrophysics Data System (ADS)

Zamkotsian, Frédéric; Spanò, Paolo; Bon, William; Riva, Marco; Lanzoni, Patrick; Nicastro, Luciano; Molinari, Emilio; Cosentino, Rosario; Ghedina, Adriano; Gonzalez, Manuel; Di Marcantonio, Paolo; Coretti, Igor; Cirami, Roberto; Manetta, Marco; Zerbi, Filippo; Tresoldi, Daniela; Valenziano, Luca

2012-09-01

Multi-Object Spectrographs (MOS) are the major instruments for studying primary galaxies and remote and faint objects. Current object selection systems are limited and/or difficult to implement in next generation MOS for space and groundbased telescopes. A promising solution is the use of MOEMS devices such as micromirror arrays which allow the remote control of the multi-slit configuration in real time. We are developing a Digital Micromirror Device (DMD) - based spectrograph demonstrator called BATMAN. We want to access the largest FOV with the highest contrast. The selected component is a DMD chip from Texas Instruments in 2048 x 1080 mirrors format, with a pitch of 13.68μm. Our optical design is an all-reflective spectrograph design with F/4 on the DMD component. This demonstrator permits the study of key parameters such as throughput, contrast and ability to remove unwanted sources in the FOV (background, spoiler sources), PSF effect, new observational modes. This study will be conducted in the visible with possible extension in the IR. A breadboard on an optical bench, ROBIN, has been developed for a preliminary determination of these parameters. The demonstrator on the sky is then of prime importance for characterizing the actual performance of this new family of instruments, as well as investigating the operational procedures on astronomical objects. BATMAN will be placed on the Nasmyth focus of Telescopio Nazionale Galileo (TNG) during next year.

Hermes: the engineering challenges

NASA Astrophysics Data System (ADS)

Brzeski, Jurek; Gers, Luke; Smith, Greg; Staszak, Nicholas

2012-09-01

The Australian Astronomical Observatory is building a 4-channel VPH-grating High Efficiency and Resolution Multi Element Spectrograph (HERMES) for the 3.9 meter Anglo-Australian Telescope (AAT). HERMES will provide a nominal spectral resolving power of 28,000 for Galactic Archaeology with an optional high-resolution mode of 45,000 with the use of a slit mask. HERMES is fed by a fibre positioning robot called 2dF at the telescope prime focus. There are a total of 784 science fibres, which interface with the spectrograph via two separate slit body assemblies, each comprising of 392 science fibers. The slit defines the spectral lines of 392 fibres on the detector. The width of the detector determines the spectral bandwidth and the detector height determines the fibre to fibre spacing or cross talk. Tolerances that follow from this are all in the 10 micrometer range. The slit relay optics must contribute negligibly to the overall image quality budget and uniformly illuminate the spectrograph exit pupil. The latter requirement effectively requires that the relay optics provide a telecentric input at the collimator entrance slit. As a result it is critical to align the optical components to extreme precision required by the optical design. This paper discusses the engineering challenges of designing, optimising, tolerancing and manufacturing of very precise mechanical components for housing optics and the design of low cost of jigs and fixtures for alignment and assembly of the optics.

BS-virus-finder: virus integration calling using bisulfite sequencing data.

PubMed

Gao, Shengjie; Hu, Xuesong; Xu, Fengping; Gao, Changduo; Xiong, Kai; Zhao, Xiao; Chen, Haixiao; Zhao, Shancen; Wang, Mengyao; Fu, Dongke; Zhao, Xiaohui; Bai, Jie; Mao, Likai; Li, Bo; Wu, Song; Wang, Jian; Li, Shengbin; Yang, Huangming; Bolund, Lars; Pedersen, Christian N S

2018-01-01

DNA methylation plays a key role in the regulation of gene expression and carcinogenesis. Bisulfite sequencing studies mainly focus on calling single nucleotide polymorphism, different methylation region, and find allele-specific DNA methylation. Until now, only a few software tools have focused on virus integration using bisulfite sequencing data. We have developed a new and easy-to-use software tool, named BS-virus-finder (BSVF, RRID:SCR_015727), to detect viral integration breakpoints in whole human genomes. The tool is hosted at https://github.com/BGI-SZ/BSVF. BS-virus-finder demonstrates high sensitivity and specificity. It is useful in epigenetic studies and to reveal the relationship between viral integration and DNA methylation. BS-virus-finder is the first software tool to detect virus integration loci by using bisulfite sequencing data. © The Authors 2017. Published by Oxford University Press.

MuSICa image slicer prototype at 1.5-m GREGOR solar telescope

NASA Astrophysics Data System (ADS)

Calcines, A.; López, R. L.; Collados, M.; Vega Reyes, N.

2014-07-01

Integral Field Spectroscopy is an innovative technique that is being implemented in the state-of-the-art instruments of the largest night-time telescopes, however, it is still a novelty for solar instrumentation. A new concept of image slicer, called MuSICa (Multi-Slit Image slicer based on collimator-Camera), has been designed for the integral field spectrograph of the 4-m European Solar Telescope. This communication presents an image slicer prototype of MuSICa for GRIS, the spectrograph of the 1.5-m GREGOR solar telescope located at the Observatory of El Teide. MuSICa at GRIS reorganizes a 2-D field of view of 24.5 arcsec into a slit of 0.367 arcsec width by 66.76 arcsec length distributed horizontally. It will operate together with the TIP-II polarimeter to offer high resolution integral field spectropolarimetry. It will also have a bidimensional field of view scanning system to cover a field of view up to 1 by 1 arcmin.

Measuring the scatter in the cluster optical richness-mass relation with machine learning

NASA Astrophysics Data System (ADS)

Boada, Steven Alvaro

The distribution of massive clusters of galaxies depends strongly on the total cosmic mass density, the mass variance, and the dark energy equation of state. As such, measures of galaxy clusters can provide constraints on these parameters and even test models of gravity, but only if observations of clusters can lead to accurate estimates of their total masses. Here, we carry out a study to investigate the ability of a blind spectroscopic survey to recover accurate galaxy cluster masses through their line-of- sight velocity dispersions (LOSVD) using probability based and machine learning methods. We focus on the Hobby Eberly Telescope Dark Energy Experiment (HETDEX), which will employ new Visible Integral-Field Replicable Unit Spectrographs (VIRUS), over 420 degree2 on the sky with a 1/4.5 fill factor. VIRUS covers the blue/optical portion of the spectrum (3500 - 5500 A), allowing surveys to measure redshifts for a large sample of galaxies out to z < 0.5 based on their absorption or emission (e.g., [O II], Mg II, Ne V) features. We use a detailed mock galaxy catalog from a semi-analytic model to simulate surveys observed with VIRUS, including: (1) Survey, a blind, HETDEX-like survey with an incomplete but uniform spectroscopic selection function; and (2) Targeted, a survey which targets clusters directly, obtaining spectra of all galaxies in a VIRUS-sized field. For both surveys, we include realistic uncertainties from galaxy magnitude and line-flux limits. We benchmark both surveys against spectroscopic observations with perfect" knowledge of galaxy line-of-sight velocities. With Survey observations, we can recover cluster masses to ˜ 0.1 dex which can be further improved to < 0.1 dex with Targeted observations. This level of cluster mass recovery provides important measurements of the intrinsic scatter in the optical richness-cluster mass relation, and enables constraints on the key cosmological parameter, sigma 8, to < 20%. As a demonstration of the methods developed previously, we present a pilot survey with integral field spectroscopy of ten galaxy clusters optically selected from the Sloan Digital Sky Survey's DR8 at z = 0.2 - 0.3. Eight of the clusters are rich (lambda > 60) systems with total inferred masses (1.58 -17.37) x1014 M (M 200c), and two are poor (lambda < 15) systems with inferred total masses ˜ 0.5 x 1014 M? (M200c ). We use the Mitchell Spectrograph, (formerly the VIRUS-P spectrograph, a prototype of the HETDEX VIRUS instrument) located on the McDonald Observatory 2.7m telescope, to measure spectroscopic redshifts and line-of-sight velocities of the galaxies in and around each cluster, determine cluster membership and derive LOSVDs. We test both a LOSVD-cluster mass scaling relation and a machine learning based approach to infer total cluster mass. After comparing the cluster mass estimates to the literature, we use these independent cluster mass measurements to estimate the absolute cluster mass scale, and intrinsic scatter in the optical richness-mass relationship. We measure the intrinsic scatter in richness at fixed cluster mass to be sigmaM/lambda = 0.27 +/- 0.07 dex in excellent agreement with previous estimates of sigmaM/lambda ˜ 0.2 - 0.3 dex. We discuss the importance of the data used to train the machine learning methods and suggest various strategies to import the accuracy of the bias (offset) and scatter in the optical richness-cluster mass relation. This demonstrates the power of blind spectroscopic surveys such as HETDEX to provide robust cluster mass estimates which can aid in the determination of cosmological parameters and help to calibrate the observable-mass relation for future photometric large area-sky surveys.

Automated systems for the analysis of meteor spectra: The SMART Project

NASA Astrophysics Data System (ADS)

Madiedo, José M.

2017-09-01

This work analyzes a meteor spectroscopy survey called SMART (Spectroscopy of Meteoroids in the Atmosphere by means of Robotic Technologies), which is being conducted since 2006. In total, 55 spectrographs have been deployed at 10 different locations in Spain with the aim to obtain information about the chemical nature of meteoroids ablating in the atmosphere. The main improvements in the hardware and the software developed in the framework of this project are described, and some results obtained by these automatic devices are also discussed.

The AstroBiology Explorer (ABE) MIDEX Mission: Using Infrared Spectroscopy to Identify Organic Molecules in Space

NASA Technical Reports Server (NTRS)

Sandford, S. A.

2002-01-01

The AstroBiology Explorer (ABE) mission is one of four selected for Phase A Concept Study in NASA's current call for MIDEX class missions. ABE is a cooled space telescope equipped with spectrographs covering the 2.5-20 micron spectral range. The ABE mission is devoted to the detection and identification of organic and related molecular species in space. ABE is currently under study at NASA's Ames Research Center in collaboration with Ball Aerospace.

Evaluation of a National Call Center and a Local Alerts System for Detection of New Cases of Ebola Virus Disease - Guinea, 2014-2015

DTIC Science & Technology

2016-03-11

Control and Prevention Evaluation of a National Call Center and a Local Alerts System for Detection of New Cases of Ebola Virus Disease — Guinea, 2014...principally through the use of a telephone alert system. Community members and health facilities report deaths and suspected Ebola cases to local alert ...sensitivity of the national call center with the local alerts system, the CDC country team performed probabilistic record linkage of the combined

Circulative Nonpropagative Aphid Transmission of Nanoviruses: an Oversimplified View

PubMed Central

Sicard, Anne; Zeddam, Jean-Louis; Yvon, Michel; Michalakis, Yannis; Gutiérrez, Serafin

2015-01-01

ABSTRACT Plant virus species of the family Nanoviridae have segmented genomes with the highest known number of segments encapsidated individually. They thus likely represent the most extreme case of the so-called multipartite, or multicomponent, viruses. All species of the family are believed to be transmitted in a circulative nonpropagative manner by aphid vectors, meaning that the virus simply crosses cellular barriers within the aphid body, from the gut to the salivary glands, without replicating or even expressing any of its genes. However, this assumption is largely based on analogy with the transmission of other plant viruses, such as geminiviruses or luteoviruses, and the details of the molecular and cellular interactions between aphids and nanoviruses are poorly investigated. When comparing the relative frequencies of the eight genome segments in populations of the species Faba bean necrotic stunt virus (FBNSV) (genus Nanovirus) within host plants and within aphid vectors fed on these plants, we unexpectedly found evidence of reproducible changes in the frequencies of some specific segments. We further show that these changes occur within the gut during early stages of the virus cycle in the aphid and not later, when the virus is translocated into the salivary glands. This peculiar observation, which was similarly confirmed in three aphid vector species, Acyrthosiphon pisum, Aphis craccivora, and Myzus persicae, calls for revisiting of the mechanisms of nanovirus transmission. It reveals an unexpected intimate interaction that may not fit the canonical circulative nonpropagative transmission. IMPORTANCE A specific mode of interaction between viruses and arthropod vectors has been extensively described in plant viruses in the three families Luteoviridae, Geminiviridae, and Nanoviridae, but never in arboviruses of animals. This so-called circulative nonpropagative transmission contrasts with the classical biological transmission of animal arboviruses in that the corresponding viruses are thought to cross the vector cellular barriers, from the gut lumen to the hemolymph and to the salivary glands, without expressing any of their genes and without replicating. By monitoring the genetic composition of viral populations during the life cycle of Faba bean necrotic stunt virus (FBNSV) (genus Nanovirus), we demonstrate reproducible genetic changes during the transit of the virus within the body of the aphid vector. These changes do not fit the view that viruses simply traverse the bodies of their arthropod vectors and suggest more intimate interactions, calling into question the current understanding of circulative nonpropagative transmission. PMID:26178991

77 FR 2728 - Request for Public Comment on Nominations and Call for Additional Nominations to the Report on...

Federal Register 2010, 2011, 2012, 2013, 2014

2012-01-19

... pentachlorophenol shiftwork involving light at night ortho-toluidine trichloroethylene uranium (depleted) viruses (selected): Kaposi's sarcoma--associated herpesvirus, Epstein-Barr virus (EBV), human T-cell lymphotropic virus type 1 (HTLV-1), human immunodeficiency virus (HIV), and Merkel cell polyomavirus * Nominations to...

5 Things to Know About Zika and Pregnancy

MedlinePlus

... considering becoming pregnant — may be worried about the Zika virus. The virus causes a serious birth defect called ... in or must travel to countries where the Zika virus is most active, consider postponing becoming pregnant. A ...

H5N1 influenza viruses: facts, not fear.

PubMed

Palese, Peter; Wang, Taia T

2012-02-14

The ongoing controversy over publication of two studies involving the transmission in ferrets of H5N1 (H5) subtype influenza viruses and the recommendations of the National Science Advisory Board for Biosecurity to redact key details in the manuscripts call for an examination of relevant scientific facts. In addition, there are calls in the media to destroy the viruses, curtail future research in this area, and protect the public from such "frightening" research efforts. Fear needs to be put to rest with solid science and not speculation.

Molecular interactions and immune responses between maize fine streak virus and the leafhopper vector G. nigrifrons through differential expression and RNA interference

USDA-ARS?s Scientific Manuscript database

Maize fine streak virus (MFSV) is an emerging virus of maize that is transmitted by an insect vector, the leafhopper called Graminella nigrifrons. Virus transmission by the leafhopper requires that the virus enter into and multiply in insect cells, tissues and organs before being transmitted to a ne...

New methods for the detection of viruses: call for review of drinking water quality guidelines.

PubMed

Grabow, W O; Taylor, M B; de Villiers, J C

2001-01-01

Drinking water supplies which meet international recommendations for source, treatment and disinfection were analysed. Viruses recovered from 100 L-1,000 L volumes by in-line glass wool filters were inoculated in parallel into four cell culture systems. Cell culture inoculation was used to isolate cytopathogenic viruses, amplify the nucleic acid of non-cytopathogenic viruses and confirm viability of viruses. Over a period of two years, viruses were detected in 23% of 413 drinking water samples and 73% of 224 raw water samples. Cytopathogenic viruses were detected in 6% raw water samples but not in any treated drinking water supplies. Enteroviruses were detected in 17% drinking water samples, adenoviruses in 4% and hepatitis A virus in 3%. In addition to these viruses, astro- and rotaviruses were detected in raw water. All drinking water supplies had heterotrophic plate counts of < 100/mL, total and faecal coliform counts of 0/100 mL and negative results in qualitative presence-absence tests for somatic and F-RNA coliphages (500 mL samples). These results call for a revision of water quality guidelines based on indicator organisms and vague reference to the absence of viruses.

NIR camera and spectrograph SWIMS for TAO 6.5m telescope: array control system and its performance

NASA Astrophysics Data System (ADS)

Terao, Yasunori; Motohara, Kentaro; Konishi, Masahiro; Takahashi, Hidenori; Kato, Natsuko M.; Kitagawa, Yutaro; Kobayakawa, Yutaka; Ohashi, Hirofumi; Tateuchi, Ken; Todo, Soya

2016-08-01

SWIMS (Simultaneous-color Wide-field Infrared Multi-object Spectrograph) is a near-infrared imager and multi-object spectrograph as one of the first generation instruments for the University of Tokyo Atacama Observatory (TAO) 6.5m telescope. In this paper, we describe an array control system of SWIMS and results of detector noise performance evaluation. SWIMS incorporates four (and eight in future) HAWAII-2RG focal plane arrays for detectors, each driven by readout electronics components: a SIDECAR ASIC and a JADE2 Card. The readout components are controlled by a HAWAII-2RG Testing Software running on a virtual Windows machine on a Linux PC called array control PC. All of those array control PCs are then supervised by a SWIMS control PC. We have developed an "array control software system", which runs on the array control PC to control the HAWAII-2RG Testing Software, and consists of a socket client and a dedicated server called device manager. The client runs on the SWIMS control PC, and the device manager runs on the array control PC. An exposure command, issued by the client on the SWIMS control PC, is sent to the multiple device managers on the array control PCs, and then multiple HAWAII-2RGs are driven simultaneously. Using this system, we evaluate readout noise performances of the detectors, both in a test dewar and in a SWIMS main dewar. In the test dewar, we confirm the readout noise to be 4.3 e- r.m.s. by 32 times multiple sampling when we operate only a single HAWAII-2RG, whereas in the case of simultaneous driving of two HAWAII-2RGs, we still obtain sufficiently low readout noise of 10 e- r.m.s. In the SWIMS main dewar, although there are some differences between the detectors, the readout noise is measured to be 4:1-4:6 e- r.m.s. with simultaneous driving by 64 times multiple sampling, which meets the requirement for background-limited observations in J band of 14 e- r.m.s..

VizieR Online Data Catalog: Double-peaked narrow lines in AGN. II. z<0.1 (Nevin+, 2016)

NASA Astrophysics Data System (ADS)

Nevin, R.; Comerford, J.; Muller-Sanchez, F.; Barrows, R.; Cooper, M.

2017-02-01

To determine the nature of 71 Type 2 AGNs with double-peaked [OIII] emission lines in SDSS that are at z<0.1 and further characterize their properties, we observe them using two complementary follow-up methods: optical long-slit spectroscopy and Jansky Very Large Array (VLA) radio observations. We use various spectrographs with similar pixel scales (Lick Kast Spectrograph; Palomar Double Spectrograph; MMT Blue Channel Spectrograph; APO Dual Imaging Spectrograph and Keck DEep Imaging Multi-Object Spectrograph. We use a 1200 lines/mm grating for all spectrographs; see table 1. In future work, we will combine our long-slit observations with the VLA data for the full sample of 71 galaxies (O. Muller-Sanchez+ 2016, in preparation). (4 data files).

Taxonomy and phylogeny of black-and-white colobus monkeys. Inferences from an analysis of loud call variation.

PubMed

Oates, J F; Trocco, T F

1983-01-01

Field recordings of male loud calls (or roars) from each major form of black-and-white colobus monkey have been analyzed spectrographically, and features of tempo and pitch measured. Considered together with data on cranial dimensions, coat pattern, and geographical distribution, the results of this analysis suggest that there are five species of black-and-white colobus: Colobus angolensis, C. guereza, C. polykomos, C. satanas, and C. vellerosus. C. guereza and C. vellerosus may have differentiated most recently during a major arid event prior to the last Pleistocene glacial maximum; they have an identical low-pitched roar which we consider to be a shared, derived character. The other species, of which C. satanas has the most distinct roar, may belong to older lineages.

Geographical variation of St. Lucia Parrot flight vocalizations

USGS Publications Warehouse

Kleeman, Patrick M.; Gilardi, James D.

2005-01-01

Parrots are vocal learners and many species of parrots are capable of learning new calls, even as adults. This capability gives parrots the potential to develop communication systems that can vary dramatically over space. St. Lucia Parrot (Amazona versicolor) flight vocalizations were examined for geographic variation between four different sites on the island of St. Lucia. Spectrographic cross-correlation analysis of a commonly used flight vocalization, the p-chow call, demonstrated quantitative differences between sites. Additionally, the similarity of p-chows decreased as the distance between sites increased. Flight call repertoires also differed among sites; parrots at the Des Bottes and Quilesse sites each used one flight call unique to those sites, while parrots at the Barre de L'Isle site used a flight call that Quilesse parrots gave only while perched. It is unclear whether the vocal variation changed clinally with distance, or whether there were discrete dialect boundaries as in a congener, the Yellow-naped Parrot (Amazona auropalliata, Wright 1996). The geographical scale over which the St. Lucia Parrot's vocal variation occurred was dramatically smaller than that of the Yellow-naped Parrot. Similar patterns of fine-scale vocal variation may be more widespread among other parrot species in the Caribbean than previously documented.

STEM VQ Method, Using Scanning Transmission Electron Microscopy (STEM) for Accurate Virus Quantification

DTIC Science & Technology

2017-02-02

Corresponding Author Abstract Accurate virus quantification is sought, but a perfect method still eludes the scientific community. Electron...unlimited. UNCLASSIFIED 2 provides morphology data and counts all viral particles, including partial or noninfectious particles; however, EM methods ...consistent, reproducible virus quantification method called Scanning Transmission Electron Microscopy – Virus Quantification (STEM-VQ) which simplifies

78 FR 32229 - Notice of Request for Revision to and Extension of Approval of an Information Collection; Virus...

Federal Register 2010, 2011, 2012, 2013, 2014

2013-05-29

...] Notice of Request for Revision to and Extension of Approval of an Information Collection; Virus-Serum... associated with the Virus-Serum-Toxin Act and regulations. DATES: We will consider all comments that we... call (202) 799-7039 before coming. FOR FURTHER INFORMATION CONTACT: For information regarding the Virus...

The mongoose, the pheasant, the pox, and the retrovirus.

PubMed

Etienne, Lucie; Emerman, Michael

2013-01-01

Paleovirology is the study of ancient viruses. The existence of a paleovirus can sometimes be detected by virtue of its accidental insertion into the germline of different animal species, which allows one to date when the virus actually existed. However, the ancient and the modern often connect, as modern viruses have unexpected origins that can be traced to ancient infections. The genomes of two species of mongooses and an egg-laying mammal called an echidna show that a virus currently present in poultry, the reticuloendotheliosis virus (REV), is actually of ancient exotic mammalian origin. REV apparently spread to poultry through a circuitous route involving the isolation of malaria parasites from a pheasant from Borneo housed at the Bronx Zoo that was contaminated with REV. Repeated passage of this virus in poultry adapted the virus to its new host. At some point, the virus got inserted into another virus, called fowlpox virus, which has spread back into the wild. Although REV may still exist somewhere in a mammalian host, its modern form links an 8 million-year-old infection of the ancestor of a mongoose to a virus that now is circulating in wild birds through malaria studies in the mid-20(th) century. These lessons of ancient and modern viruses have implications for modern human pandemics from viral reservoirs and for human interventions that may come with unintended consequences.

Infectious Mononucleosis

MedlinePlus

... mono", is an infection usually caused by the Epstein-Barr virus. The virus spreads through saliva, which is why it's sometimes called "kissing disease." Mono occurs most often in teens and young ...

The BigBOSS spectrograph

NASA Astrophysics Data System (ADS)

Jelinsky, Patrick; Bebek, Chris; Besuner, Robert; Carton, Pierre-Henri; Edelstein, Jerry; Lampton, Michael; Levi, Michael E.; Poppett, Claire; Prieto, Eric; Schlegel, David; Sholl, Michael

2012-09-01

BigBOSS is a proposed ground-based dark energy experiment to study baryon acoustic oscillations (BAO) and the growth of structure with a 14,000 square degree galaxy and quasi-stellar object redshift survey. It consists of a 5,000- fiber-positioner focal plane feeding the spectrographs. The optical fibers are separated into ten 500 fiber slit heads at the entrance of ten identical spectrographs in a thermally insulated room. Each of the ten spectrographs has a spectral resolution (λ/Δλ) between 1500 and 4000 over a wavelength range from 360 - 980 nm. Each spectrograph uses two dichroic beam splitters to separate the spectrograph into three arms. It uses volume phase holographic (VPH) gratings for high efficiency and compactness. Each arm uses a 4096x4096 15 μm pixel charge coupled device (CCD) for the detector. We describe the requirements and current design of the BigBOSS spectrograph. Design trades (e.g. refractive versus reflective) and manufacturability are also discussed.

The social vocalization repertoire of east Australian migrating humpback whales (Megaptera novaeangliae).

PubMed

Dunlop, Rebecca A; Noad, Michael J; Cato, Douglas H; Stokes, Dale

2007-11-01

Although the songs of humpback whales have been extensively studied, other vocalizations and percussive sounds, referred to as "social sounds," have received little attention. This study presents the social vocalization repertoire of migrating east Australian humpback whales from a sample of 660 sounds recorded from 61 groups of varying composition, over three years. The social vocalization repertoire of humpback whales was much larger than previously described with a total of 34 separate call types classified aurally and by spectrographic analysis as well as statistically. Of these, 21 call types were the same as units of the song current at the time of recording but used individually instead of as part of the song sequence, while the other 13 calls were stable over the three years of the study and were not part of the song. This study provides a catalog of sounds that can be used as a basis for future studies. It is an essential first step in determining the function, contextual use and cultural transmission of humpback social vocalizations.

The deterministic optical alignment of the HERMES spectrograph

NASA Astrophysics Data System (ADS)

Gers, Luke; Staszak, Nicholas

2014-07-01

The High Efficiency and Resolution Multi Element Spectrograph (HERMES) is a four channel, VPH-grating spectrograph fed by two 400 fiber slit assemblies whose construction and commissioning has now been completed at the Anglo Australian Telescope (AAT). The size, weight, complexity, and scheduling constraints of the system necessitated that a fully integrated, deterministic, opto-mechanical alignment system be designed into the spectrograph before it was manufactured. This paper presents the principles about which the system was assembled and aligned, including the equipment and the metrology methods employed to complete the spectrograph integration.

Slit Function Measurement of An Imaging Spectrograph Using Fourier Transform Techniques

NASA Technical Reports Server (NTRS)

Park, Hongwoo; Swimyard, Bruce; Jakobsen, Peter; Moseley, Harvey; Greenhouse, Matthew

2004-01-01

Knowledge of a spectrograph slit function is necessary to interpret the unresolved lines in an observed spectrum. A theoretical slit function can be calculated from the sizes of the entrance slit, the detector aperture when it functions as an exit slit, the dispersion characteristic of the disperser, and the point spread function of the spectrograph. A measured slit function is preferred to the theoretical one for the correct interpretation of the spectral data. In a scanning spectrometer with a single exit slit, the slit function is easily measured. In a fixed grating/or disperser spectrograph, illuminating the entrance slit with a near monochromatic light from a pre-monochrmator or a tunable laser and varying the wavelength of the incident light can measure the slit function. Even though the latter technique had been used successfully for the slit function measurements, it had been very laborious and it would be prohibitive to an imaging spectrograph or a multi-object spectrograph that has a large field of view. We explore an alternative technique that is manageable for the measurements. In the proposed technique, the imaging spectrograph is used as a detector of a Fourier transform spectrometer. This method can be applied not only to an IR spectrograph but also has a potential to a visible/UV spectrograph including a wedge filter spectrograph. This technique will require a blackbody source of known temperature and a bolometer to characterize the interferometer part of the Fourier Transform spectrometer. This pa?er will describe the alternative slit function measurement technique using a Fourier transform spectrometer.

Mauna Kea Spectrographic Explorer (MSE): a conceptual design for multi-object high resolution spectrograph

NASA Astrophysics Data System (ADS)

Zhang, Kai; Zhu, Yongtian; Hu, Zhongwen

2016-08-01

The Maunakea Spectroscopic Explorer (MSE) project will transform the CFHT 3.6m optical telescope into a 10m class dedicated multi-object spectroscopic facility, with an ability to simultaneously measure thousands of objects with a spectral resolution range spanning 2,000 to 40,000. MSE will develop two spectrographic facilities to meet the science requirements. These are respectively, the Low/Medium Resolution spectrographs (LMRS) and High Resolution spectrographs (HRS). Multi-object high resolution spectrographs with total of 1,156 fibers is a big challenge, one that has never been attempted for a 10m class telescope. To date, most spectral survey facilities work in single order low/medium resolution mode, and only a few Wide Field Spectrographs (WFS) provide a cross-dispersion high resolution mode with a limited number of orders. Nanjing Institute of Astronomical Optics and Technology (NIAOT) propose a conceptual design with the use of novel image slicer arrays and single order immersed Volume Phase Holographic (VPH) grating for the MSE multi-object high resolution spectrographs. The conceptual scheme contains six identical fiber-link spectrographs, each of which simultaneously covers three restricted bands (λ/30, λ/30, λ/15) in the optical regime, with spectral resolution of 40,000 in Blue/Visible bands (400nm / 490nm) and 20,000 in Red band (650nm). The details of the design is presented in this paper.

Advanced Optimal Extraction for the Spitzer/IRS

NASA Astrophysics Data System (ADS)

Lebouteiller, V.; Bernard-Salas, J.; Sloan, G. C.; Barry, D. J.

2010-02-01

We present new advances in the spectral extraction of pointlike sources adapted to the Infrared Spectrograph (IRS) on board the Spitzer Space Telescope. For the first time, we created a supersampled point-spread function of the low-resolution modules. We describe how to use the point-spread function to perform optimal extraction of a single source and of multiple sources within the slit. We also examine the case of the optimal extraction of one or several sources with a complex background. The new algorithms are gathered in a plug-in called AdOpt which is part of the SMART data analysis software.

Bat Virus Downunder: The Hendra Virus and Its Relationship to Native Fruit Bats, Horses and Human --Learning and Teaching Opportunities for Classroom Practice

ERIC Educational Resources Information Center

van Rooy, Wilhelmina

2013-01-01

The fatal effect of the Hendra virus was noticed first in Queensland, Australia in 1994 when several horses died from an "unidentified cause". This was followed by the death of trainers and veterinarians called to assist affected horses. It is now known that the "unidentified cause", is a virus harboured in native Australian…

Human Immune Response to Dengue Infections

DTIC Science & Technology

1989-07-31

antigens of all 4 serotypes. These CTL lysed autologous fibroblasts infected with vaccinia-dengue recombinant viruses containing the E, or several non...responses of PBMC from a dengue 4-immune donor to call-free dengue viruses . .. ........... 6 Table 2. Lysis of dengue virus-infected fibroblasts by dengue...4-immune PBMC stimulated with dengue viruses ... ...... 7 Table 3. Inhibition of the lysis of dengue- infected fibroblasts by monoclonal anti-CD8

VizieR Online Data Catalog: FGK dwarfs atmospheric parameters (Ryabchikova+, 2016)

NASA Astrophysics Data System (ADS)

Ryabchikova, T.; Piskunov, N.; Pakhomov, Y.; Tsymbal, V.; Titarenko, A.; Sitnova, T.; Alexeeva, S.; Fossati, L.; Mashonkina, L.

2016-08-01

For the spectroscopic analysis, we choose the 13 MS stars including the Sun (Table 1) in the 4900-6600K temperature range and with metallicity between [Fe/H]=-1.5 and +0.3dex. All the stars, except HD 149026, have, at least, one interferometric determination of radius and effective temperature. Spectra of the programme stars were obtained with different spectrographs. Most data were extracted from the following archives: the UVES/VLT and HARPS/3.6m spectrographs at ESO,2 the ELODIE/1.93-m spectrograph3 at the Observatoire de Haute Provence, and the ESPaDONs spectrograph at the Canada-France-Hawaii Telescope (CFHT). Spectra of beta Vir and HD 103095 were obtained with the FOCES spectrograph at 2.2-m telescope of the Calar Alto Observatory. One of the spectra of 61 Vir was obtained with the Hamilton Echelle Spectrograph attached to the Shane 3-m telescope of the Lick Observatory. Spectra of few stars, including that of the Sun reflected from Ganymede, were obtained with the HiReS/Keck spectrograph. (3 data files).

Nonlinear acoustics in the pant-hoot vocalization of common chimpanzees (Pan troglodytes)

NASA Astrophysics Data System (ADS)

Riede, Tobias; Arcadi, Adam Clark; Owren, Michael J.

2003-04-01

Pant-hoots produced by chimpanzees are multi-call vocalizations. While predominantly harmonically structured, pant-hoots can exhibit acoustic complexity that has recently been found to result from inherent nonlinearity in the vocal-fold dynamics. This complexity reflects abrupt shifts between qualitatively distinct vibration patterns (known as modes), which include but are not limited to simple, synchronous movements by the two vocal folds. Studies with humans in particular have shown that as the amplitude and vibration rate increase, vocal-fold action becomes increasingly susceptible to higher-order synchronizations, desynchronized movements, and irregular behavior. We examined the occurrence of these sorts of nonlinear phenomena in pant-hoots, contrasting quieter and lower-pitched introduction components with loud and high-pitched climax calls in the same sounds. Spectrographic evidence revealed four classic kinds of nonlinear phenomena, including discrete frequency jumps, subharmonics, biphonation, and deterministic chaos. While these events were virtually never found in the introduction, they occurred in more than half of the climax calls. Biphonation was by far the most common. Individual callers varied in the degree to which their climax calls exhibited nonlinear phenomena, but we are consistent in showing more biphonation than any of the other forms. These outcomes demonstrate that understanding these calls requisitely requires an understanding of such events.

PUMA: the first results of a nebular spectrograph for the study of the kinematics of interstellar medium

NASA Astrophysics Data System (ADS)

Langarica, Rosalia; Bernal, Abel; Rosado, Margarita; Cobos Duenas, Francisco J.; Garfias, Fernando; Gutierrez, Leonel; Le Coarer, Etienne; Tejada, Carlos; Tinoco, Silvio J.

1998-07-01

The kinematics of the interstellar medium may be studied by means of a scanning Fabry-Perot interferometer (SFPI). This allows the coverage of a wider field of view with higher spatial and spectral resolution than when a high-dispersion classical spectrograph is used. The system called PUMA consists of a focal reducer and a SFPI installed in the 2.1 m telescope of the San Pedro Martir National Astronomical Observatory (SPM), Mexico, in its f/7.5 configuration. It covers a field of view of 10 arcmin providing direct images as well as interferograms which are focused on a 1024 X 1024 Tektronix CCD, covering a wide spectral range. It is considered the integration of other optical elements for further developments. The optomechanical system and the developed software allow exact, remote positioning of all movable parts and control the FPI scanning and data acquisition. The parallelism of the interferometer plates is automatically achieved by a custom method. The PUMA provides spectral resolutions of 0.414 Angstrom and a free spectral range of 19.8 Angstrom. Results of high quality that compete with those obtained by similar systems in bigger telescopes, are presented.

Robotic Spectroscopy at the Dark Sky Observatory

NASA Astrophysics Data System (ADS)

Rosenberg, Daniel E.; Gray, Richard O.; Mashburn, Jonathan; Swenson, Aaron W.; McGahee, Courtney E.; Briley, Michael M.

2018-06-01

Spectroscopic observations using the classification-resolution Gray-Miller spectrograph attached to the Dark Sky Observatory 32 inch telescope (Appalachian State University, North Carolina) have been automated with a robotic script called the “Robotic Spectroscopist” (RS). RS runs autonomously during the night and controls all operations related to spectroscopic observing. At the heart of RS are a number of algorithms that first select and center the target star in the field of an imaging camera and then on the spectrograph slit. RS monitors the observatory weather station, and suspends operations and closes the dome when weather conditions warrant, and can reopen and resume observations when the weather improves. RS selects targets from a list using a queue-observing protocol based on observer-assigned priorities, but also uses target-selection criteria based on weather conditions, especially seeing. At the end of the night RS transfers the data files to the main campus, where they are reduced with an automatic pipeline. Our experience has shown that RS is more efficient and consistent than a human observer, and produces data sets that are ideal for automatic reduction. RS should be adaptable for use at other similar observatories, and so we are making the code freely available to the astronomical community.

A transmission imaging spectrograph and microfabricated channel system for DNA analysis.

PubMed

Simpson, J W; Ruiz-Martinez, M C; Mulhern, G T; Berka, J; Latimer, D R; Ball, J A; Rothberg, J M; Went, G T

2000-01-01

In this paper we present the development of a DNA analysis system using a microfabricated channel device and a novel transmission imaging spectrograph which can be efficiently incorporated into a high throughput genomics facility for both sizing and sequencing of DNA fragments. The device contains 48 channels etched on a glass substrate. The channels are sealed with a flat glass plate which also provides a series of apertures for sample loading and contact with buffer reservoirs. Samples can be easily loaded in volumes up to 640 nL without band broadening because of an efficient electrokinetic stacking at the electrophoresis channel entrance. The system uses a dual laser excitation source and a highly sensitive charge-coupled device (CCD) detector allowing for simultaneous detection of many fluorescent dyes. The sieving matrices for the separation of single-stranded DNA fragments are polymerized in situ in denaturing buffer systems. Examples of separation of single-stranded DNA fragments up to 500 bases in length are shown, including accurate sizing of GeneCalling fragments, and sequencing samples prepared with a reduced amount of dye terminators. An increase in sample throughput has been achieved by color multiplexing.

Coronagraphic Observations of Lunar Sodium

NASA Technical Reports Server (NTRS)

Hunten, D. M.; Sprague, A. L.

1997-01-01

This grant supported an investigation of lunar sodium by our coronagraph and spectrograph on nearby Mount Lemmon. We report successful operation and data analysis during International Lunar Atmosphere Week, September 15 - 22, 1995, and submittal of a paper to Icarus. The core of the proposed work was to observe the lunar sodium atmosphere with our classical Lyot coronagraph and specially-built grating spectrograph on Mount Lemmon, a 9400-foot peak about an hour's drive from Tucson. It is optimized for low scattered light and for observing from the Moon's limb to an altitude of approx.1 lunar radius. The grating has 600 lines/mm and a blaze angle of 49 deg., and is used with a somewhat wide slit at a resolving power of about 5000. It is called DARRK for the initials of the people who designed it. The rejection of stray light from the Moon's disk is spectacularly good: when the sky is clear this light is absent right up to a few arcsec from the limb. We use an excellent 1024 by 1024 pixel CCD camera, operated at -100 C; the exposures are 10 to 30 min. Data reduction is done with IRAF running on a Sun Sparcstation.

Fiber Scrambling for High Precision Spectrographs

NASA Astrophysics Data System (ADS)

Kaplan, Zachary; Spronck, J. F. P.; Fischer, D.

2011-05-01

The detection of Earth-like exoplanets with the radial velocity method requires extreme Doppler precision and long-term stability in order to measure tiny reflex velocities in the host star. Recent planet searches have led to the detection of so called "super-Earths” (up to a few Earth masses) that induce radial velocity changes of about 1 m/s. However, the detection of true Earth analogs requires a precision of 10 cm/s. One of the largest factors limiting Doppler precision is variation in the Point Spread Function (PSF) from observation to observation due to changes in the illumination of the slit and spectrograph optics. Thus, this stability has become a focus of current instrumentation work. Fiber optics have been used since the 1980's to couple telescopes to high-precision spectrographs, initially for simpler mechanical design and control. However, fiber optics are also naturally efficient scramblers. Scrambling refers to a fiber's ability to produce an output beam independent of input. Our research is focused on characterizing the scrambling properties of several types of fibers, including circular, square and octagonal fibers. By measuring the intensity distribution after the fiber as a function of input beam position, we can simulate guiding errors that occur at an observatory. Through this, we can determine which fibers produce the most uniform outputs for the severest guiding errors, improving the PSF and allowing sub-m/s precision. However, extensive testing of fibers of supposedly identical core diameter, length and shape from the same manufacturer has revealed the "personality” of individual fibers. Personality describes differing intensity patterns for supposedly duplicate fibers illuminated identically. Here, we present our results on scrambling characterization as a function of fiber type, while studying individual fiber personality.

Dramatic robustness of a multiple delay dispersed interferometer to spectrograph errors: how mixing delays reduces or cancels wavelength drift

NASA Astrophysics Data System (ADS)

Erskine, David J.; Linder, E.; Wishnow, E.; Edelstein, J.; Sirk, M.; Muirhead, P.; Lloyd, J.; Kim, A.

2016-08-01

We describe demonstrations of remarkable robustness to instrumental noises by using a multiple delay externally dispersed interferometer (EDI) on stellar observations at the Hale telescope. Previous observatory EDI demonstrations used a single delay. The EDI (also called "TEDI") boosted the 2,700 resolution of the native TripleSpec NIR spectrograph (950-2450 nm) by as much as 10x to 27,000, using 7 overlapping delays up to 3 cm. We observed superb rejection of fixed pattern noises due to bad pixels, since the fringing signal responds only to changes in multiple exposures synchronous to the applied delay dithering. Remarkably, we observed a 20x reduction of reaction in the output spectrum to PSF shifts of the native spectrograph along the dispersion direction, using our standard processing. This allowed high resolution observations under conditions of severe and irregular PSF drift otherwise not possible without the interferometer. Furthermore, we recently discovered an improved method of weighting and mixing data between pairs of delays that can theoretically further reduce the net reaction to PSF drift to zero. We demonstrate a 350x reduction in reaction to a native PSF shift using a simple simulation. This technique could similarly reduce radial velocity noise for future EDI's that use two delays overlapped in delay space (or a single delay overlapping the native peak). Finally, we show an extremely high dynamic range EDI measurement of our ThAr lamp compared to a literature ThAr spectrum, observing weak features ( 0.001x height of nearest strong line) that occur between the major lines. Because of individuality of each reference lamp, accurate knowledge of its spectrum between the (unfortunately) sparse major lines is important for precision radial velocimetry.

MuSICa at GRIS: a prototype image slicer for EST at GREGOR

NASA Astrophysics Data System (ADS)

Calcines, A.; Collados, M.; López, R. L.

2013-05-01

This communication presents a prototype image slicer for the 4-m European Solar Telescope (EST) designed for the spectrograph of the 1.5-m GREGOR solar telescope (GRIS). The design of this integral field unit has been called MuSICa (Multi-Slit Image slicer based on collimator-Camera). It is a telecentric system developed specifically for the integral field, high resolution spectrograph of EST and presents multi-slit capability, reorganizing a bidimensional field of view of 80 arcsec^{2} into 8 slits, each one of them with 200 arcsec length × 0.05 arcsec width. It minimizes the number of optical components needed to fulfil this multi-slit capability, three arrays of mirrors: slicer, collimator and camera mirror arrays (the first one flat and the other two spherical). The symmetry of the layout makes it possible to overlap the pupil images associated to each part of the sliced entrance field of view. A mask with only one circular aperture is placed at the pupil position. This symmetric characteristic offers some advantages: facilitates the manufacturing process, the alignment and reduces the costs. In addition, it is compatible with two modes of operation: spectroscopic and spectro-polarimetric, offering a great versatility. The optical quality of the system is diffraction-limited. The prototype will improve the performances of GRIS at GREGOR and is part of the feasibility study of the integral field unit for the spectrographs of EST. Although MuSICa has been designed as a solar image slicer, its concept can also be applied to night-time astronomical instruments (Collados et al. 2010, Proc. SPIE, Vol. 7733, 77330H; Collados et al. 2012, AN, 333, 901; Calcines et al. 2010, Proc. SPIE, Vol. 7735, 77351X)

A study of low mass x-ray binaries

NASA Technical Reports Server (NTRS)

Catura, Richard C.

1994-01-01

The entire effort under this contract during the period through January 1992 was devoted to a study of the cost and schedule required to put an upgraded Aries payload on the ASTRO-SPAS carrier provided by the German space agency, DARA. The ASTRO-SPAS is flown on the Space Shuttle, deployed by the crew for 5 to 7 days of free-flying observations and then recovered and returned to Earth. The spectrograph was to be provided by a collaboration involving the Lockheed Palo Alto Research Laboratory (LPARL), the Center for Astrophysics and Space Astronomy (CASA) at the U. of Colorado and the Mullard Space Science Laboratory (MSSL) in England. The payload for the ASTRO-SPAS mission included our own spectrograph and an instrument provided by Dr. Joachim Trumper of the Max Planck Institute (MPI) in Garching, Germany. A meeting was held in late July, 1991 with German scientists, DARA representatives and MBB, the ASTRO-SPAS spacecraft contractor. Sufficient information was exchanged to allow us to complete the study and the name LEXSA (Low Energy X-ray Spectrograph on ASTRO-SPAS) was given to our instrument and HERTA (High Energy x-Ray Telescope on ASTR0-SPAS) to the German instrument. The combination was called SPECTRO-SPAS. On October 1, 1991 CASA and LPARL submitted a cost and brief technical proposal to NASA on results of the study. The total cost over 4 fiscal years was 6.16 M dollars including CASA costs. NASA Headquarters was briefed on 3 October on details of the proposal. They found our costs reasonable, but indicated that the NASA FY '92 budget is extremely tight, they could not readily identify where the -S2.3M for LEXSA could be found and it was not clear that FY '93 would improve.

Optical Design And Performance Of A Dual-Grating, Direct-Reading Spectrograph For Spectrochemical Analyses

NASA Astrophysics Data System (ADS)

Steinhaus, David W.; Kline, John V.; Bieniewski, Thomas M.; Dow, Grove S.; Apel, Charles T.

1980-11-01

An all-mirror optical system is used to direct the light from a variety of spectroscopic sources to two 2-m spectrographs that are placed on either side of a sturdy vertical mounting plate. The gratings were chosen so that the first spectrograph covers the ultraviolet spectral region, and the second spectrograph covers the ultraviolet, visible, and near-infrared regions. With the over 2.5 m of focal curves, each ultraviolet line is available at more than one place. Thus, problems with close lines can be overcome. The signals from a possible maximum of 256 photoelectric detectors go to a small computer for reading and calculation of the element abundances. To our knowledge, no other direct-reading spectrograph has more than about 100 fixed detectors. With an inductively-coupled-plasma source, our calibration curves, and detection limits, are similar to those of other workers using a direct-reading spectrograph.

The MEDIDO Survey: Dark Matter in Low Dispersion Stellar Systems

NASA Astrophysics Data System (ADS)

Noyola, Eva; Bustamante, Maria Jose

2017-06-01

We will present preliminary results of the Medido Survey. The Survey focuses on dwarf galaxies of various types, as well as Milky Way globular clusters. We have been gathering data at the McDonald Observatory using the VIRUS-W spectrograph, which is capable of resolving velocity dispersions slightly above 10 km/s. For the galaxies, our focus is to improve kinematics in the central regions in order to tackle the cusp/core discrepancy between observations and models. In the case of the globular clusters, we map kinematics out to about 2 half-light radii with the goal of testing if any dark matter content can be detected or if dark matter can be confidently ruled out for these systems.

A new, morphologically cryptic bush-cricket discovered on the basis of its song in the Carpathian Mountains (Insecta, Orthoptera, Tettigoniidae).

PubMed

Iorgu, Ionuţ Ştefan; Iorgu, Elena Iulia; Szövényi, Gergely; Orci, Kirill Márk

2017-01-01

A new, morphologically cryptic species of phaneropterine bush-crickets is described from the grasslands of the Romanian Eastern Carpathians. Despite the morphological and acoustic similarities with the recently described Isophya nagyi Szövényi, Puskás & Orci, I. bucovinensis sp. n. is characterized by a peculiar male calling song, with faster syllable repetition rate (160-220 syllables per minute, at 22-27°C) and less complex syllable structure (composed of only two elements instead of three observable in I. nagyi ). The morphological description of the new species is supplemented with an oscillographic and spectrographic analysis of the male calling song and male-female pair-forming acoustic duet. An acoustic signal-based identification key is provided for all the presently known species of the Isophya camptoxypha species group, including the new species.

A new, morphologically cryptic bush-cricket discovered on the basis of its song in the Carpathian Mountains (Insecta, Orthoptera, Tettigoniidae)

PubMed Central

Iorgu, Ionuţ Ştefan; Iorgu, Elena Iulia; Szövényi, Gergely; Orci, Kirill Márk

2017-01-01

Abstract A new, morphologically cryptic species of phaneropterine bush-crickets is described from the grasslands of the Romanian Eastern Carpathians. Despite the morphological and acoustic similarities with the recently described Isophya nagyi Szövényi, Puskás & Orci, I. bucovinensis sp. n. is characterized by a peculiar male calling song, with faster syllable repetition rate (160–220 syllables per minute, at 22–27°C) and less complex syllable structure (composed of only two elements instead of three observable in I. nagyi). The morphological description of the new species is supplemented with an oscillographic and spectrographic analysis of the male calling song and male–female pair-forming acoustic duet. An acoustic signal-based identification key is provided for all the presently known species of the Isophya camptoxypha species group, including the new species. PMID:28769716

Female preferences drive the evolution of mimetic accuracy in male sexual displays.

PubMed

Coleman, Seth William; Patricelli, Gail Lisa; Coyle, Brian; Siani, Jennifer; Borgia, Gerald

2007-10-22

Males in many bird species mimic the vocalizations of other species during sexual displays, but the evolutionary and functional significance of interspecific vocal mimicry is unclear. Here we use spectrographic cross-correlation to compare mimetic calls produced by male satin bowerbirds (Ptilonorhynchus violaceus) in courtship with calls from several model species. We show that the accuracy of vocal mimicry and the number of model species mimicked are both independently related to male mating success. Multivariate analyses revealed that these mimetic traits were better predictors of male mating success than other male display traits previously shown to be important for male mating success. We suggest that preference-driven mimetic accuracy may be a widespread occurrence, and that mimetic accuracy may provide females with important information about male quality. Our findings support an alternative hypothesis to help explain a common element of male sexual displays.

Vocalizations of adult male Asian koels (Eudynamys scolopacea) in the breeding season.

PubMed

Khan, Abdul Aziz; Qureshi, Irfan Zia

2017-01-01

Defining the vocal repertoire provides a basis for understanding the role of acoustic signals in sexual and social interactions of an animal. The Asian koel (Eudynamys scolopacea) is a migratory bird which spends its summer breeding season in the plains of Pakistan. The bird is typically wary and secretive but produces loud and distinct calls, making it easily detected when unseen. Like the other birds in the wild, presumably Asian koels use their calls for social cohesion and coordination of different behaviors. To date, the description of vocal repertoire of the male Asian koel has been lacking. Presently we analyzed and described for the first time the vocalizations of the adult male Asian koel, recorded in two consecutive breeding seasons. Using 10 call parameters, we categorized the vocalization type into six different categories on the basis of spectrogram and statistical analyses, namely the; "type 1 cooee call", "type 2 cooee call", "type 1 coegh call", "type 2 coegh call", "wurroo call" and "coe call". These names were assigned not on the basis of functional analysis and were therefore onomatopoeic. Stepwise cross validated discriminant function analysis classified the vocalization correctly (100%) into the predicted vocal categories that we initially classified on the basis of spectrographic examination. Our findings enrich the biological knowledge about vocalizations of the adult male Asian koel and provide a foundation for future acoustic monitoring of the species, as well as for comparative studies with vocalizations of other bird species of the cuckoo family. Further studies on the vocalizations of the Asian koel are required to unravel their functions in sexual selection and individual recognition.

The New Instrument Suite of the TSU/Fairborn 2m Automatic Spectroscopic Telescope

NASA Astrophysics Data System (ADS)

Muterspaugh, Matthew W.; Maxwell, T.; Williamson, M. W.; Fekel, F. C.; Ge, J.; Kelly, J.; Ghasempour, A.; Powell, S.; Zhao, B.; Varosi, F.; Schofield, S.; Liu, J.; Warner, C.; Jakeman, H.; Avner, L.; Swihart, S.; Harrison, C.; Fishler, D.

2014-01-01

Tied with the Liverpool Telescope as the world's largest fully robotic optical research telescope, Tennessee State University's (TSU) 2m Automatic Spectroscopic Telescope (AST) has recently been upgraded to improve performance and increase versatility by supporting multiple instruments. Its second-generation instrument head enables us to rapidly switch between any of up to twelve fibers optics, each of which can supply light to a different instrument. In 2013 construction was completed on a new temperature-controlled guest instrument building, and two new high resolution spectrographs were commissioned. The current set of instrumentation includes (1) the telescope's original R=30,000 echelle spectrograph (0.38--0.83 microns simultaneous), (2) a single order R=7,000 spectrograph centered at Ca H&K features, (3) a single-mode-fiber fed miniature echelle spectrograph (R=100,000; 0.48--0.62 microns simultaneous), (4) the University of Florida's EXPERT-3 spectrograph (R=100,000; 0.38--0.9 microns simultaneous; vacuum and temperature controlled) and (5) the University of Florida's FIRST spectrograph (R=70,000$; 0.8--1.35 or 1.4--1.8 microns simultaneous; vacuum and temperature controlled). Future instruments include the Externally Dispersed Interferometry (EDI) Testbed, a combination low resolution dispersed spectrograph and Fourier Transform Spectrograph. We welcome inquiries from the community in regards to observing access and/or proposals for future guest instruments.

Design and realization of the real-time spectrograph controller for LAMOST based on FPGA

NASA Astrophysics Data System (ADS)

Wang, Jianing; Wu, Liyan; Zeng, Yizhong; Dai, Songxin; Hu, Zhongwen; Zhu, Yongtian; Wang, Lei; Wu, Zhen; Chen, Yi

2008-08-01

A large Schmitt reflector telescope, Large Sky Area Multi-Object Fiber Spectroscopic Telescope(LAMOST), is being built in China, which has effective aperture of 4 meters and can observe the spectra of as many as 4000 objects simultaneously. To fit such a large amount of observational objects, the dispersion part is composed of a set of 16 multipurpose fiber-fed double-beam Schmidt spectrographs, of which each has about ten of moveable components realtimely accommodated and manipulated by a controller. An industrial Ethernet network connects those 16 spectrograph controllers. The light from stars is fed to the entrance slits of the spectrographs with optical fibers. In this paper, we mainly introduce the design and realization of our real-time controller for the spectrograph, our design using the technique of System On Programmable Chip (SOPC) based on Field Programmable Gate Array (FPGA) and then realizing the control of the spectrographs through NIOSII Soft Core Embedded Processor. We seal the stepper motor controller as intellectual property (IP) cores and reuse it, greatly simplifying the design process and then shortening the development time. Under the embedded operating system μC/OS-II, a multi-tasks control program has been well written to realize the real-time control of the moveable parts of the spectrographs. At present, a number of such controllers have been applied in the spectrograph of LAMOST.

New infrared spectrograph for the investigation of the mesopause region

NASA Astrophysics Data System (ADS)

Koltovskoi, I. I.; Ammosov, P. P.; Gavrilyeva, G. A.; Ammosova, A. M.; Sivseva, V. I.

2017-11-01

A new infrared spectrograph with high temporal resolution for observation of OH band (3-1) emission dynamics is described. For the automated work of the spectrograph, special software was created. Remote control over the device is also configured.

Charting Ingredients for Life

NASA Technical Reports Server (NTRS)

2005-01-01

[figure removed for brevity, see original site] Figure 1: Spectrum Charts Light from a Faraway Galaxy

This graph, or spectrum, charts light from a faraway galaxy located 10 billion light years from Earth. It tracks mid-infrared light from an extremely luminous galaxy when the universe was only 1/4 of its current age.

Spectra are created when an instrument called a spectrograph spreads light out into its basic parts, like a prism turning sunlight into a rainbow. They reveal the signatures, or 'fingerprints,' of molecules that make up a galaxy and contribute to its light.

Spitzer's infrared spectrometer identified characteristic fingerprints of complex organic molecules called polycyclic aromatic hydrocarbons, illustrated in the artist's concept in the inset. These large molecules comprised of carbon and hydrogen, are considered among the building blocks of life.

Scientists determined it took 10 billion years for photons from this galaxy to reach Spitzer's infrared eyes. These complex carbon and hydrogen molecules are from a young galaxy which is undergoing intense star formation, at the time the universe was only 3.5 billion years old.

These distant galaxies with enormous amounts of gas being converted into young stars are some of the most luminous objects in the sky. Enshrouded by dust, they are only faint, inconspicuous little dots in optical images. They are as bright as 10 trillion suns put together and 10 times brighter than starburst galaxies seen in our local universe.

This prompts a fascinating question as to what physical process is driving such enormous energy production in these galaxies when the universe is so young.

These data were taken by Spitzer's infrared spectrograph in August and September 2004.

Deletion of Marek’s disease virus large subunit of ribonucleotide reductase (RR) impairs virus growth in vitro and in vivo

USDA-ARS?s Scientific Manuscript database

Marek’s disease virus (MDV), a highly cell-associated lymphotropic alphaherpesvirus, is the causative agent of a neoplastic disease in domestic chickens, called Marek’s disease (MD). In the unique long region of the MDV genome, open reading frames UL39 and UL40 encode the large and small subunits o...

Design and Construction of VUES: The Vilnius University Echelle Spectrograph

NASA Astrophysics Data System (ADS)

Jurgenson, Colby; Fischer, Debra; McCracken, Tyler; Sawyer, David; Giguere, Matt; Szymkowiak, Andrew; Santoro, Fernando; Muller, Gary

2016-03-01

In February 2014, the Yale Exoplanet Laboratory was commissioned to design, build, and deliver a high resolution (R=60,000) spectrograph for the 1.65m telescope at the Molėtai Astronomical Observatory. The observatory is operated by the Institute of Theoretical Physics and Astronomy at Vilnius University. The Vilnius University Echelle Spectrograph (VUES) is a white-pupil design that is fed via an octagonal fiber from the telescope and has an operational bandpass from 400nm to 880nm. VUES incorporates a novel modular optomechanical design that allows for quick assembly and alignment on commercial optical tables. This approach allowed the spectrograph to be assembled and commissioned at Yale using lab optical tables and then reassembled at the observatory on a different optical table with excellent repeatability. The assembly and alignment process for the spectrograph was reduced to a few days, allowing the spectrograph to be completely disassembled for shipment to Lithuania, and then installed at the observatory during a 10-day period in June of 2015.

Flu facts. What is influenza?

PubMed

2002-02-01

Influenza, commonly called 'the flu', is an illness caused by the influenza virus. The virus is passed form person to person by sneezing or coughing. Typical symptoms of influenza include fever, cough, sore throat, fatigue, muscle aches, headaches, runny nose and watery eyes.

Goodman High Throughput Spectrograph | SOAR

Science.gov Websites

SPARTAN Near-IR Camera Ohio State Infrared Imager/Spectrograph (OSIRIS) - NO LONGER AVAILABLE SOAR 320-850 nm wavelength range. The paper describing the instrument is Clemens et al. (2004) Applying for IRAF. Publishing results based on Goodman data?: ADS link to 2004 SPIE Goodman Spectrograph paper

The coude spectrograph and echelle scanner of the 2.7 m telescope at McDonald Observatory.

NASA Technical Reports Server (NTRS)

Tull, R. G.

1972-01-01

Discussion of certain design aspects of the coude spectrograph, and description of the coude scanner that uses some of the spectrograph optics. The configuration of the large echelle grating used is reviewed along with the systems of computer scanner control and data handling.

The Coude spectrograph and echelle scanner of the 2.7 m telescope at McDonald observatory

NASA Technical Reports Server (NTRS)

Tull, R. G.

1972-01-01

The design of the Coude spectrograph of the 2.7 m McDonald telescope is discussed. A description is given of the Coude scanner which uses the spectrograph optics, the configuration of the large echelle and the computer scanner control and data systems.

VizieR Online Data Catalog: CARMENES radial velocity curves of 7 M-dwarf (Trifonov+, 2018)

NASA Astrophysics Data System (ADS)

Trifonov, T.; Kuerster, M.; Zechmeister, M.; Tal-Or, L.; Caballero, J. A.; Quirrenbach, A.; Amado, P. J.; Ribas, I.; Reiners, A.; Reffert, S.; Dreizler, S.; Hatzes, A. P.; Kaminski, A.; Launhardt, R.; Henning, T.; Montes, D.; Bejar, V. J. S.; Mundt, R.; Pavlov, A.; Schmitt, J. H. M. M.; Seifert, W.; Morales, J. C.; Nowak, G.; Jeffers, S. V.; Rodriguez-Lopez, C.; Del Burgo, C.; Anglada-Escude, G.; Lopez-Santiago, J.; Mathar, R. J.; Ammler-von Eiff, M.; Guenther, E. W.; Barrado, D.; Gonzalez Hernandez, J. I.; Mancini, L.; Stuermer, J.; Abril, M.; Aceituno, J.; Alonso-Floriano, F. J.; Antona, R.; Anwand-Heerwart, H.; Arroyo-Torres, B.; Azzaro, M.; Baroch, D.; Bauer, F. F.; Becerril, S.; Benitez, D.; Berdinas, Z. M.; Bergond, G.; Bluemcke, M.; Brinkmoeller, M.; Cano, J.; Cardenas Vazquez, M. C.; Casal, E.; Cifuentes, C.; Claret, A.; Colome, J.; Cortes-Contreras, M.; Czesla, S.; Diez-Alonso, E.; Feiz, C.; Fernandez, M.; Ferro, I. M.; Fuhrmeister, B.; Galadi-Enriquez, D.; Garcia-Piquer, A.; Garcia Vargas, M. L.; Gesa, L.; Gomez Galera, V.; Gonzalez-Peinado, R.; Groezinger, U.; Grohnert, S.; Guardia, J.; Guijarro, A.; de Guindos, E.; Gutierrez-Soto, J.; Hagen, H.-J.; Hauschildt, P. H.; Hedrosa, R. P.; Helmling, J.; Hermelo, I.; Hernandez Arabi, R.; Hernandez Castano, L.; Hernandez Hernando, F.; Herrero, E.; Huber, A.; Huke, P.; Johnson, E.; de Juan, E.; Kim, M.; Klein, R.; Klueter, J.; Klutsch, A.; Lafarga, M.; Lampon, M.; Lara, L. M.; Laun, W.; Lemke, U.; Lenzen, R.; Lopez Del Fresno, M.; Lopez-Gonzalez, J.; Lopez-Puertas, M.; Lopez Salas, J. F.; Luque, R.; Magan Madinabeitia, H.; Mall, U.; Mandel, H.; Marfil, E.; Marin Molina, J. A.; Maroto Fernandez, D.; Martin, E. L.; Martin-Ruiz, S.; Marvin, C. J.; Mirabet, E.; Moya, A.; Moreno-Raya, M. E.; Nagel, E.; Naranjo, V.; Nortmann, L.; Ofir, A.; Oreiro, R.; Palle, E.; Panduro, J.; Pascual, J.; Passegger, V. M.; Pedraz, S.; Perez-Calpena, A.; Perez Medialdea, D.; Perger, M.; Perryman, M. A. C.; Pluto, M.; Rabaza, O.; Ramon, A.; Rebolo, R.; Redondo, P.; Reinhardt, S.; Rhode, P.; Rix, H.-W.; Rodler, F.; Rodriguez, E.; Rodriguez Trinidad, A.; Rohlo, R.-R.; Rosich, A.; Sadegi, S.; Sanchez-Blanco, E.; Sanchez Carrasco, M. A.; Sanchez-Lopez, A.; Sanz-Forcada, J.; Sarkis, P.; Sarmiento, L. F.; Schaefer, S.; Schiller, J.; Schoefer, P.; Schweitzer, A.; Solano, E.; Stahl, O.; Strachan, J. B. P.; Suarez, J. C.; Tabernero, H. M.; Tala, M.; Tulloch, S. M.; Veredas, G.; Vico Linares, J. I.; Vilardel, F.; Wagner, K.; Winkler, J.; Woltho, V.; Xu, W.; Yan, F.; Zapatero Osorio, M. R.

2017-10-01

The two CARMENES spectrographs are grism cross-dispersed, white pupil, echelle spectrograph working in quasi-Littrow mode using a two-beam, two-slice image slicer. The visible spectrograph covers the wavelength range from 0.52um to 1.05um with 61 orders, a resolving power of R=94600, and a mean sampling of 2.8 pixels per resolution element. The data presented in this paper were taken during the early phase of operation of the CARMENES visible-light spectrograph. (8 data files).

Data reductions and data quality for the high resolution spectrograph on the Southern African Large Telescope

NASA Astrophysics Data System (ADS)

Crawford, S. M.; Crause, Lisa; Depagne, Éric; Ilkiewicz, Krystian; Schroeder, Anja; Kuhn, Rudolph; Hettlage, Christian; Romero Colmenaro, Encarni; Kniazev, Alexei; Väisänen, Petri

2016-08-01

The High Resolution Spectrograph (HRS) on the Southern African Large Telescope (SALT) is a dual beam, fiber-fed echelle spectrograph providing high resolution capabilities to the SALT observing community. We describe the available data reduction tools and the procedures put in place for regular monitoring of the data quality from the spectrograph. Data reductions are carried out through the pyhrs package. The data characteristics and instrument stability are reported as part of the SALT Dashboard to help monitor the performance of the instrument.

Second generation spectrograph for the Hubble Space Telescope

NASA Astrophysics Data System (ADS)

Woodgate, B. E.; Boggess, A.; Gull, T. R.; Heap, S. R.; Krueger, V. L.; Maran, S. P.; Melcher, R. W.; Rebar, F. J.; Vitagliano, H. D.; Green, R. F.; Wolff, S. C.; Hutchings, J. B.; Jenkins, E. B.; Linsky, J. L.; Moos, H. W.; Roesler, F.; Shine, R. A.; Timothy, J. G.; Weistrop, D. E.; Bottema, M.; Meyer, W.

1986-01-01

The preliminary design for the Space Telescope Imaging Spectrograph (STIS), which has been selected by NASA for definition study for future flight as a second-generation instrument on the Hubble Space Telescope (HST), is presented. STIS is a two-dimensional spectrograph that will operate from 1050 A to 11,000 A at the limiting HST resolution of 0.05 arcsec FWHM, with spectral resolutions of 100, 1200, 20,000, and 100,000 and a maximum field-of-view of 50 x 50 arcsec. Its basic operating modes include echelle model, long slit mode, slitless spectrograph mode, coronographic spectroscopy, photon time-tagging, and direct imaging. Research objectives are active galactic nuclei, the intergalactic medium, global properties of galaxies, the origin of stellar systems, stelalr spectral variability, and spectrographic mapping of solar system processes.

Compact high-resolution spectrographs for large and extremely large telescopes: using the diffraction limit

NASA Astrophysics Data System (ADS)

Robertson, J. Gordon; Bland-Hawthorn, Joss

2012-09-01

As telescopes get larger, the size of a seeing-limited spectrograph for a given resolving power becomes larger also, and for ELTs the size will be so great that high resolution instruments of simple design will be infeasible. Solutions include adaptive optics (but not providing full correction for short wavelengths) or image slicers (which give feasible but still large instruments). Here we develop the solution proposed by Bland-Hawthorn and Horton: the use of diffraction-limited spectrographs which are compact even for high resolving power. Their use is made possible by the photonic lantern, which splits a multi-mode optical fiber into a number of single-mode fibers. We describe preliminary designs for such spectrographs, at a resolving power of R ~ 50,000. While they are small and use relatively simple optics, the challenges are to accommodate the longest possible fiber slit (hence maximum number of single-mode fibers in one spectrograph) and to accept the beam from each fiber at a focal ratio considerably faster than for most spectrograph collimators, while maintaining diffraction-limited imaging quality. It is possible to obtain excellent performance despite these challenges. We also briefly consider the number of such spectrographs required, which can be reduced by full or partial adaptive optics correction, and/or moving towards longer wavelengths.

Use of sequence-independent-single-primer-amplification (SISPA) for whole genome sequencing using illumina MiSeq platform for avian influenza virus, Newcastle disease virus, and infectious bronchitis virus

USDA-ARS?s Scientific Manuscript database

Over the past decade, Next Generation Sequencing (NGS) technologies, also called deep sequencing, have continued to evolve, increasing capacity and lower the cost necessary for large genome sequencing projects. The one of the advantage of NGS platforms is the possibility to sequence the samples with...

Using Vocal Dialects to Assess the Population Structure of Bigg's Killer Whales in Alaska

NASA Astrophysics Data System (ADS)

Sharpe, D. L.; Wade, P. R.; Castellote, M.; Cornick, L. A.

2016-02-01

Apex predators are important indicators of ecosystem health, but little is known about the population structure of Bigg's killer whales (Orcinus orca; i.e. "transient" ecotype) in western Alaska. Currently, all Bigg's killer whales in western Alaska are ascribed to a single broad stock for management under the US Marine Mammal Protection Act. However, recent nuclear microsatellite and mitochondrial DNA analyses indicate that this stock is likely comprised of genetically distinct sub-populations. In accordance with what is known about group-specific killer whale vocal dialects in other locations, we sought to evaluate and refine Bigg's killer whale population structure by using acoustic recordings to examine the spatial distribution of call types in western Alaska. Digital audio recordings were collected from 34 encounters with Bigg's killer whales throughout the Aleutian and Pribilof Islands in the summers of 2001-2007 and 2009-2010, then visually and aurally reviewed using the software Adobe Audition. High quality calls were identified and classified into discrete call types based on spectrographic characteristics and aural uniqueness. A comparative analysis of call types recorded throughout the study area revealed spatial segregation of call types, corresponding well with proposed genetic delineations. These results suggest that Bigg's killer whales exhibit regional vocal dialects, which can be used to help refine the putative sub-populations that have been genetically identified throughout western Alaska. Our findings support the proposal to restructure current stock designations.

PRAXIS: a low background NIR spectrograph for fibre Bragg grating OH suppression

NASA Astrophysics Data System (ADS)

Horton, Anthony; Ellis, Simon; Lawrence, Jon; Bland-Hawthorn, Joss

2012-09-01

Fibre Bragg grating (FBG) OH suppression is capable of greatly reducing the bright sky background seen by near infrared spectrographs. By filtering out the airglow emission lines at high resolution before the light enters the spectrograph this technique prevents scattering from the emission lines into interline regions, thereby reducing the background at all wavelengths. In order to take full advantage of this sky background reduction the spectrograph must have very low instrumental backgrounds so that it remains sky noise limited. Both simulations and real world experience with the prototype GNOSIS system show that existing spectrographs, designed for higher sky background levels, will be unable to fully exploit the sky background reduction. We therefore propose PRAXIS, a spectrograph optimised specifically for this purpose. The PRAXIS concept is a fibre fed, fully cryogenic, fixed format spectrograph for the J and H-bands. Dark current will be minimised by using the best of the latest generation of NIR detectors while thermal backgrounds will be reduced by the use of a cryogenic fibre slit. Optimised spectral formats and the use of high throughput volume phase holographic gratings will further enhance sensitivity. Our proposal is for a modular system, incorporating exchangeable fore-optics units, integral field units and OH suppression units, to allow PRAXIS to operate as a visitor instrument on any large telescope and enable new developments in FBG OH suppression to be incorporated as they become available. As a high performance fibre fed spectrograph PRAXIS could also serve as a testbed for other astrophotonic technologies.

The problem of scattering in fibre-fed VPH spectrographs and possible solutions

NASA Astrophysics Data System (ADS)

Ellis, S. C.; Saunders, Will; Betters, Chris; Croom, Scott

2014-07-01

All spectrographs unavoidably scatter light. Scattering in the spectral direction is problematic for sky subtraction, since atmospheric spectral lines are blurred. Scattering in the spatial direction is problematic for fibre fed spectrographs, since it limits how closely fibres can be packed together. We investigate the nature of this scattering and show that the scattering wings have both a Lorentzian component, and a shallower (1/r) component. We investigate the causes of this from a theoretical perspective, and argue that for the spectral PSF the Lorentzian wings are in part due to the profile of the illumination of the pupil of the spectrograph onto the diffraction grating, whereas the shallower component is from bulk scattering. We then investigate ways to mitigate the diffractive scattering by apodising the pupil. In the ideal case of a Gaussian apodised pupil, the scattering can be significantly improved. Finally we look at realistic models of the spectrograph pupils of fibre fed spectrographs with a centrally obstructed telescope, and show that it is possible to apodise the pupil through non-telecentric injection into the fibre.

Jet Morphology and Coma Analysis of 103P/Hartley 2

NASA Astrophysics Data System (ADS)

Vaughan, Charles; Pierce, D.; Dorman, G.; Cochran, A.

2012-10-01

We have observed comet 103P/Hartley 2 using the George and Cynthia Mitchell Spectrograph (formerly VIRUS-P) on the 2.7 m telescope at McDonald Observatory (Hill et al. 2008). Data for CN, C2, C3, and NH2 were collected over six nights from 2010 July 15 to November 10. The data were processed to form images of the coma for each of the observed species. We have performed azimuthal average division on each of the coma images to examine jet morphology and have investigated the nature of the production of the radical species using our modified vectorial model (Ihalawela et al. 2011). This work enhances the ongoing investigation of the chemistry and outgassing behavior of Hartley 2 as studied by the EPOXI flyby mission.

A spectrographic study of the aurora and the relation to solar wind pressure pulses.

NASA Astrophysics Data System (ADS)

Stockton-Chalk, A. B.; Lanchester, B. S.; Ivchenko, N.; Lummerzheim, D.; Throp, K.

SIF (Spectrographic Imaging Facility) is a Southampton University / University College London collaboration. The platform consists of a High Throughput Imaging Echelle Spectrograph, HiTIES, two photometers and a narrow angle auroral imager. The spectrograph has a mosaic filter; each of the three spectral panels are centred over/near important spectral features: Hbeta (486.1nm), N2+(470.9nm), N2+(465.2nm), thus allowing studies of proton and electron aurorae. The platform has been successfully deployed in Svalbard since November 1999. The purpose of the experiment was to take spectrographic measurements to study the relationship between proton and electron precipitation and to understand the nature of the precipitating spectrum of protons, both in energy and angular distributions. We present a study of the aurora observed in relation to solar wind pressure pulses.

High efficiency spectrographs for the EUV and soft X-rays

NASA Technical Reports Server (NTRS)

Cash, W.

1983-01-01

The use of grazing incidence optics and reflection grating designs is shown to be a method that improves the performance of spectrographs at wavelengths shorter than 1200 A. Emphasis is laid on spectroscopic designs for X ray and EUV astronomy, with sample designs for an objective reflection grating spectrograph (ORGS) and an echelle spectrograph for wavelengths longer than 100 A. Conical diffraction allows operations at grazing incidence in the echelle spectrograph. In ORGS, the extreme distance of X ray objects aids in collimating the source radiation, which encounters conical diffraction within the instrument, proceeds parallel to the optical axis, and arrives at the detector. A series of gratings is used to achieve the effect. A grazing echelle is employed for EUV observations, and offers a resolution of 20,000 over a 300 A bandpass.

Visible camera cryostat design and performance for the SuMIRe Prime Focus Spectrograph (PFS)

NASA Astrophysics Data System (ADS)

Smee, Stephen A.; Gunn, James E.; Golebiowski, Mirek; Hope, Stephen C.; Madec, Fabrice; Gabriel, Jean-Francois; Loomis, Craig; Le fur, Arnaud; Dohlen, Kjetil; Le Mignant, David; Barkhouser, Robert; Carr, Michael; Hart, Murdock; Tamura, Naoyuki; Shimono, Atsushi; Takato, Naruhisa

2016-08-01

We describe the design and performance of the SuMIRe Prime Focus Spectrograph (PFS) visible camera cryostats. SuMIRe PFS is a massively multi-plexed ground-based spectrograph consisting of four identical spectrograph modules, each receiving roughly 600 fibers from a 2394 fiber robotic positioner at the prime focus. Each spectrograph module has three channels covering wavelength ranges 380 nm - 640 nm, 640 nm - 955 nm, and 955 nm - 1.26 um, with the dispersed light being imaged in each channel by a f/1.07 vacuum Schmidt camera. The cameras are very large, having a clear aperture of 300 mm at the entrance window, and a mass of 280 kg. In this paper we describe the design of the visible camera cryostats and discuss various aspects of cryostat performance.

CARMENES in SPIE 2014. Building a fibre link for CARMENES

NASA Astrophysics Data System (ADS)

Stürmer, J.; Stahl, O.; Schwab, C.; Seifert, W.; Quirrenbach, A.; Amado, P. J.; Ribas, I.; Reiners, A.; Caballero, J. A.

2014-07-01

Optical fibres have successfully been used to couple high-resolution spectrographs to telescopes for many years. As they allow the instrument to be placed in a stable and isolated location, they decouple the spectrograph from environmental influences. Fibres also provide a substantial increase in stability of the input illumination of the spectrograph, which makes them a key optical element of the two high-resolution spectrographs of CARMENES. The optical properties of appropriate fibres are investigated, especially their scrambling and focal ratio degradation (FRD) behaviour. In the laboratory the output illumination of various fibres is characterized and different methods to increase the scrambling of the fibre link are tested and compared. In particular, a combination of fibres with different core shapes shows a very good scrambling performance. The near-field (NF) shows an extremely low sensitivity to the exact coupling conditions of the fibre. However, small changes in the far-field (FF) can still be seen. Related optical simulations of the stability performance of the two spectrographs are presented. The simulations focus on the influence of the non-perfect illumination stabilization in the far-field of the fibre on the radial velocity stability of the spectrographs. We use ZEMAX models of the spectrographs to simulate how the barycentres of the spots move depending on the FF illumination pattern and therefore how the radial velocity is affected by a variation of the spectrograph illumination. This method allows to establish a quantitative link between the results of the measurements of the optical properties of fibres on the one hand and the radial velocity precision on the other. The results provide a strong indication that 1ms?1 precision can be reached using a circular-octagonal fibre link even without the use of an optical double scrambler, which has successfully been used in other high-resolution spectrographs. Given the typical throughput of an optical double scrambler of about 75% to 85 %, our solution allows for a substantially higher throughput of the system.

NRES: The Network of Robotic Echelle Spectrographs

NASA Astrophysics Data System (ADS)

Siverd, Robert; Brown, Tim; Henderson, Todd; Hygelund, John; Barnes, Stuart; de Vera, Jon; Eastman, Jason; Kirby, Annie; Smith, Cary; Taylor, Brook; Tufts, Joseph; van Eyken, Julian

2018-01-01

Las Cumbres Observatory (LCO) is building the Network of Robotic Echelle Spectrographs (NRES), which will consist of four (up to six in the future) identical, optical (390 - 860 nm) high-precision spectrographs, each fiber-fed simultaneously by up to two 1-meter telescopes and a Thorium-Argon calibration source. We plan to install one at up to 6 observatory sites in the Northern and Southern hemispheres, creating a single, globally-distributed, autonomous spectrograph facility using up to ten 1-m telescopes. Simulations suggest we will achieve long-term radial velocity precision of 3 m/s in less than an hour for stars brighter than V = 11 or 12 once the system reaches full capability. Acting in concert, these four spectrographs will provide a new, unique facility for stellar characterization and precise radial velocities.Following a few months of on-sky evaluation at our BPL test facility, the first spectrograph unit was shipped to CTIO in late 2016 and installed in March 2017. After several more months of additional testing and commissioning, regular science operations began with this node in September 2017. The second NRES spectrograph was installed at McDonald Observatory in September 2017 and released to the network after its own brief commissioning period, extending spectroscopic capability to the Northern hemisphere. The third NRES spectrograph was installed at SAAO in November 2017 and released to our science community just before year's end. The fourth NRES unit shipped in October and is currently en route to Wise Observatory in Israel with an expected release to the science community in early 2018.We will briefly overview the LCO telescope network, the NRES spectrograph design, the advantages it provides, and development challenges we encountered along the way. We will further discuss real-world performance from our first three units, initial science results, and the ongoing software development effort needed to automate such a facility for a wide array of science cases.

Lithium abundance in a sample of solar-like stars

NASA Astrophysics Data System (ADS)

López-Valdivia, R.; Hernández-Águila, J. B.; Bertone, E.; Chávez, M.; Cruz-Saenz de Miera, F.; Amazo-Gómez, E. M.

2015-08-01

We report on the determination of the lithium abundance [A(Li)] of 52 solar-like stars. For 41 objects the A(Li) here presented corresponds to the first measurement. We have measured the equivalent widths of the 6708 Å lithium feature in high-resolution spectroscopic images (R ˜ 80 000), obtained at the Observatorio Astrofísico Guillermo Haro (Sonora, Mexico), as part of the first scientific observations of the revitalized Lunar and Planetary Laboratory (LPL) Echelle Spectrograph, now known as the Cananea High-resolution Spectrograph (CanHiS). Lithium abundances were derived with the Fortran code MOOG, using as fundamental input a set of atmospheric parameters recently obtained by our group. With the help of an additional small sample with previous A(Li) determinations, we demonstrate that our lithium abundances are in agreement, to within uncertainties, with other works. Two target objects stand out from the rest of the sample. The star BD+47 3218 (Teff = 6050 ± 52 K, A(Li) = 1.86 ± 0.07 dex) lies inside the so-called lithium desert in the A(Li)-Teff plane. The other object, BD+28 4515, has an A(Li) = 3.05 ± 0.07 dex, which is the highest of our sample and compatible with the expected abundances of relatively young stars.

Fast Imaging Solar Spectrograph System in New Solar Telescope

NASA Astrophysics Data System (ADS)

Park, Y.-D.; Kim, Y. H.; Chae, J.; Goode, P. R.; Cho, K. S.; Park, H. M.; Nah, J. K.; Jang, B. H.

2010-12-01

In 2004, Big Bear Solar Observatory in California, USA launched a project for construction of the world's largest aperture solar telescope (D = 1.6m) called New Solar Telescope(NST). University of Hawaii (UH) and Korea Astronomy and Space Science Institute(KASI) partly collaborate on the project. NST is a designed off-axis parabolic Gregorian reflector with very high spatial resolution(0.07 arcsec at 5000A) and is equipped with several scientific instruments such as Visible Imaging Magnetograph (VIM), InfraRed Imaging Magnetograph IRIM), and so on. Since these scientific instruments are focused on studies of the solar photosphere, we need a post-focus instrument for the NST to study the fine structures and dynamic patterns of the solar chromosphere and low Transition Region (TR) layer, including filaments/prominences, spicules, jets, micro flares, etc. For this reason, we developed and installed a fast imaging solar spectrograph(FISS) system on the NST withadvantages of achieving compact design with high spectral resolution and small aberration as well as recording many solar spectral lines in a single and/or dual band mode. FISS was installed in May, 2010 and now we carry out a test observation. In this talk, we introduce the FISS system and the results of the test observation after FISS installation.

SOFIA Science Instruments: Commissioning, Upgrades and Future Opportunities

NASA Technical Reports Server (NTRS)

Smith, Erin C.

2014-01-01

The Stratospheric Observatory for Infrared Astronomy (SOFIA) is the world's largest airborne observatory, featuring a 2.5 meter telescope housed in the aft section of a Boeing 747sp aircraft. SOFIA's current instrument suite includes: FORCAST (Faint Object InfraRed CAmera for the SOFIA Telescope), a 5-40 µm dual band imager/grism spectrometer developed at Cornell University; HIPO (High-speed Imaging Photometer for Occultations), a 0.3-1.1 micron imager built by Lowell Observatory; FLITECAM (First Light Infrared Test Experiment CAMera), a 1-5 micron wide-field imager/grism spectrometer developed at UCLA; FIFI-LS (Far-Infrared Field-Imaging Line Spectrometer), a 42-210 micron IFU grating spectrograph completed by University Stuttgart; and EXES (Echelon-Cross- Echelle Spectrograph), a 5-28 micron high-resolution spectrometer being completed by UC Davis and NASA Ames. A second generation instrument, HAWC+ (Highresolution Airborne Wideband Camera), is a 50-240 micron imager being upgraded at JPL to add polarimetry and new detectors developed at GSFC. SOFIA will continually update its instrument suite with new instrumentation, technology demonstration experiments and upgrades to the existing instrument suite. This paper details instrument capabilities and status as well as plans for future instrumentation, including the call for proposals for 3rd generation SOFIA science instruments.

Near- infrared imager and slitless spectrograph (NIRISS): a new instrument on James Webb Space Telescope (JWST)

NASA Astrophysics Data System (ADS)

Maszkiewicz, Michael

2017-11-01

The James Webb Space Telescope (JWST) is a 6.5 m diameter deployable telescope that will orbit the L2 Earth-Sun point beginning in 2018. NASA is leading the development of the JWST mission with their partners, the European Space Agency and the Canadian Space Agency. The Canadian contribution to the mission is the Fine Guidance Sensor (FGS). Originally, the FGS incorporated a flexible narrow spectral band science imaging capability in the form of the Tunable Filter Imaging Module -TFI, based on a scanning Fabry-Perot etalon. In the course of building and testing of the TFI flight model, numerous technical issues arose with unforeseeable length of required mitigation effort. In addition to that, emerging new science priorities caused that in summer of 2011 a decision was taken to replace TFI with a new instrument called Near Infrared Imager and Slitless Spectrograph (NIRISS). NIRISS preserves most of the TFI opto-mechanical design: focusing mirror, collimator and camera TMA telescopes, dual filter and pupil wheel and detectors but, instead of a tunable etalon, uses set of filters and grisms for wavelength selection and dispersion. The FGS-Guider and NIRISS have completed their instrument-level cryogenic testing and were delivered to NASA Goddard in late July 2012 for incorporation into the Integrated Science Instrument Module (ISIM).

VizieR Online Data Catalog: PS1 z>5.6 quasars follow-up (Banados+, 2016)

NASA Astrophysics Data System (ADS)

Banados, E.; Venemans, B. P.; Decarli, R.; Farina, E. P.; Mazzucchelli, C.; Walter, F.; Fan, X.; Stern, D.; Schlafly, E.; Chambers, K. C.; Rix, H.-W.; Jiang, L.; McGreer, I.; Simcoe, R.; Wang, F.; Yang, J.; Morganson, E.; De Rosa, G.; Greiner, J.; Balokovic, M.; Burgett, W. S.; Cooper, T.; Draper, P. W.; Flewelling, H.; Hodapp, K. W.; Jun, H. D.; Kaiser, N.; Kudritzki, R.-P.; Magnier, E. A.; Metcalfe, N.; Miller, D.; Schindler, J.-T.; Tonry, J. L.; Wainscoat, R. J.; Waters, C.; Yang, Q.

2017-01-01

The photometric follow-up observations were carried out over different observing runs and different instruments. We obtained optical and near-infrared images with the MPG 2.2m/GROND, New Technology Telescope (NTT)/EFOSC2, NTT/SofI, Calar Alto (CAHA) 3.5m/Omega2000, CAHA 2.2m/CAFOS21, MMT/SWIRC), and du Pont/Retrocam; see Table 1 for details of the observations and filters used. A spectroscopic campaign was carried out using several instruments at different telescopes: EFOSC2 at the NTT telescope in La Silla, the Focal Reducer / Low-Dispersion Spectrograph 2 (FORS2) at the Very Large Telescope (VLT), the Folded-Port Infrared Echellette (FIRE) spectrometer and the Low-Dispersion Survey Spectrograph (LDSS3) at the Baade and Clay Telescopes at Las Campanas Observatory, the Low-Resolution Imaging Spectrometer (LRIS) at the Keck I 10m Telescope on Mauna Kea, the Double Spectrograph (DBSP) on the 200 inch (5m) Hale Telescope at Palomar Observatory (P200), the Red-Channel Spectrograph on the 6.5m MMT Telescope, the Cassegrain TWIN Spectrograph at the 3.5m Calar Alto Telescope (CAHA 3.5m), and the Multi-object Double Spectrograph (MODS) and LUCI spectrograph at the Large Binocular Telescope (LBT). The details of the spectroscopic observations of the PS1-discovered quasars are shown in Table 5. (10 data files).

NRES: The Network of Robotic Echelle Spectrographs

NASA Astrophysics Data System (ADS)

Siverd, Robert; Brown, Timothy M.; Henderson, Todd; Hygelund, John; Barnes, Stuart; Bowman, Mark; De Vera, Jon; Eastman, Jason D.; Kirby, Annie; Norbury, Martin; Smith, Cary; Taylor, Brook; Tufts, Joseph; Van Eyken, Julian C.

2017-06-01

Las Cumbres Observatory (LCO) is building the Network of Robotic Echelle Spectrographs (NRES), which will consist of four to six identical, optical (390 - 860 nm) high-precision spectrographs, each fiber-fed simultaneously by up to two 1-meter telescopes and a Thorium-Argon calibration source. We plan to install one at up to 6 observatory sites in the Northern and Southern hemispheres, creating a single, globally-distributed, autonomous spectrograph facility using up to ten 1-m telescopes. Simulations suggest we will achieve long-term radial velocity precision of 3 m/s in less than an hour for stars brighter than V = 11 or 12. Following a few months of on-sky evaluation at our BPL test facility, the first spectrograph unit was shipped to CTIO in late 2016 and installed in March 2017. Barring serious complications, we expect regular scheduled science observing to begin in mid-2017. Three additional units are in building or testing phases and slated for deployment in late 2017. Acting in concert, these four spectrographs will provide a new, unique facility for stellar characterization and precise radial velocities. We will briefly overview the LCO telescope network, the NRES spectrograph design, the advantages it provides, and development challenges we encountered along the way. We will further discuss real-world performance from our first unit, initial science results, and the ongoing software development effort needed to automate such a facility for a wide array of science cases.

Unusually high-pitched neonate distress calls of the open-habitat Mongolian gazelle ( Procapra gutturosa) and their anatomical and hormonal predictors

NASA Astrophysics Data System (ADS)

Volodin, Ilya A.; Volodina, Elena V.; Frey, Roland; Kirilyuk, Vadim E.; Naidenko, Sergey V.

2017-06-01

In neonate ruminants, the acoustic structure of vocalizations may depend on sex, vocal anatomy, hormonal profiles and body mass and on environmental factors. In neonate wild-living Mongolian gazelles Procapra gutturosa, hand-captured during biomedical monitoring in the Daurian steppes at the Russian-Mongolian border, we spectrographically analysed distress calls and measured body mass of 22 individuals (6 males, 16 females). For 20 (5 male, 15 female) of these individuals, serum testosterone levels were also analysed. In addition, we measured relevant dimensions of the vocal apparatus (larynx, vocal folds, vocal tract) in one stillborn male Mongolian gazelle specimen. Neonate distress calls of either sex were high in maximum fundamental frequency (800-900 Hz), but the beginning and minimum fundamental frequencies were significantly lower in males than in females. Body mass was larger in males than in females. The levels of serum testosterone were marginally higher in males. No correlations were found between either body mass or serum testosterone values and any acoustic variable for males and females analysed together or separately. We discuss that the high-frequency calls of neonate Mongolian gazelles are more typical for closed-habitat neonate ruminants, whereas other open-habitat neonate ruminants (goitred gazelle Gazella subgutturosa, saiga antelope Saiga tatarica and reindeer Rangifer tarandus) produce low-frequency (<200 Hz) distress calls. Proximate cause for the high fundamental frequency of distress calls of neonate Mongolian gazelles is their very short, atypical vocal folds (4 mm) compared to the 7-mm vocal folds of neonate goitred gazelles, producing distress calls as low as 120 Hz.

Inflammatory Myopathies (Myositis)

MedlinePlus

... that can people with a virus called HTLV-1. Some myositis cases have followed infec- tion with the Coxsackie B ... only mildly elevated, or even normal. In some cases, the doctor may ask for ... muscle disease. One such antibody is called Jo-1 . The next ...

Non-Structural Proteins of Arthropod-Borne Bunyaviruses: Roles and Functions

PubMed Central

Eifan, Saleh; Schnettler, Esther; Dietrich, Isabelle; Kohl, Alain; Blomström, Anne-Lie

2013-01-01

Viruses within the Bunyaviridae family are tri-segmented, negative-stranded RNA viruses. The family includes several emerging and re-emerging viruses of humans, animals and plants, such as Rift Valley fever virus, Crimean-Congo hemorrhagic fever virus, La Crosse virus, Schmallenberg virus and tomato spotted wilt virus. Many bunyaviruses are arthropod-borne, so-called arboviruses. Depending on the genus, bunyaviruses encode, in addition to the RNA-dependent RNA polymerase and the different structural proteins, one or several non-structural proteins. These non-structural proteins are not always essential for virus growth and replication but can play an important role in viral pathogenesis through their interaction with the host innate immune system. In this review, we will summarize current knowledge and understanding of insect-borne bunyavirus non-structural protein function(s) in vertebrate, plant and arthropod. PMID:24100888

Effect of Acoustic Spectrographic Instruction on Production of English /i/ and /I/ by Spanish Pre-Service English Teachers

ERIC Educational Resources Information Center

Quintana-Lara, Marcela

2014-01-01

This study investigates the effects of Acoustic Spectrographic Instruction on the production of the English phonological contrast /i/ and / I /. Acoustic Spectrographic Instruction is based on the assumption that physical representations of speech sounds and spectrography allow learners to objectively see and modify those non-accurate features in…

Image Restoration and Analysis of Influenza Virions Binding to Membrane Receptors Reveal Adhesion-Strengthening Kinetics

PubMed Central

Lee, Donald W.; Hsu, Hung-Lun; Bacon, Kaitlyn B.; Daniel, Susan

2016-01-01

With the development of single-particle tracking (SPT) microscopy and host membrane mimics called supported lipid bilayers (SLBs), stochastic virus-membrane binding interactions can be studied in depth while maintaining control over host receptor type and concentration. However, several experimental design challenges and quantitative image analysis limitations prevent the widespread use of this approach. One main challenge of SPT studies is the low signal-to-noise ratio of SPT videos, which is sometimes inevitable due to small particle sizes, low quantum yield of fluorescent dyes, and photobleaching. These situations could render current particle tracking software to yield biased binding kinetic data caused by intermittent tracking error. Hence, we developed an effective image restoration algorithm for SPT applications called STAWASP that reveals particles with a signal-to-noise ratio of 2.2 while preserving particle features. We tested our improvements to the SPT binding assay experiment and imaging procedures by monitoring X31 influenza virus binding to α2,3 sialic acid glycolipids. Our interests lie in how slight changes to the peripheral oligosaccharide structures can affect the binding rate and residence times of viruses. We were able to detect viruses binding weakly to a glycolipid called GM3, which was undetected via assays such as surface plasmon resonance. The binding rate was around 28 folds higher when the virus bound to a different glycolipid called GD1a, which has a sialic acid group extending further away from the bilayer surface than GM3. The improved imaging allowed us to obtain binding residence time distributions that reflect an adhesion-strengthening mechanism via multivalent bonds. We empirically fitted these distributions using a time-dependent unbinding rate parameter, koff, which diverges from standard treatment of koff as a constant. We further explain how to convert these models to fit ensemble-averaged binding data obtained by assays such as surface plasmon resonance. PMID:27695072

Epidemic of cell phone virus

NASA Astrophysics Data System (ADS)

Wang, Pu; González, Marta; Barabási, Albert-László.

2008-03-01

Standard operating systems and Bluetooth technology will be a trend for future cell phone features. These will enable cell phone viruses to spread either through SMS or by sending Bluetooth requests when cell phones are physically close enough. The difference in spreading methods gives these two types of viruses' different epidemiological characteristics. SMS viruses' spread is mainly based on people's social connections, whereas the spreading of Bluetooth viruses is affected by people's mobility patterns and population distribution. Using cell phone data recording calls, SMS and locations of more than 6 million users, we study the spread of SMS and Bluetooth viruses and characterize how the social network and the mobility of mobile phone users affect such spreading processes.

Sky Subtraction with Fiber-Fed Spectrograph

NASA Astrophysics Data System (ADS)

Rodrigues, Myriam

2017-09-01

"Historically, fiber-fed spectrographs had been deemed inadequate for the observation of faint targets, mainly because of the difficulty to achieve high accuracy on the sky subtraction. The impossibility to sample the sky in the immediate vicinity of the target in fiber instruments has led to a commonly held view that a multi-object fibre spectrograph cannot achieve an accurate sky subtraction under 1% contrary to their slit counterpart. The next generation of multi-objects spectrograph at the VLT (MOONS) and the planed MOS for the E-ELT (MOSAIC) are fiber-fed instruments, and are aimed to observed targets fainter than the sky continuum level. In this talk, I will present the state-of-art on sky subtraction strategies and data reduction algorithm specifically developed for fiber-fed spectrographs. I will also present the main results of an observational campaign to better characterise the sky spatial and temporal variations ( in particular the continuum and faint sky lines)."

The FIREBall fiber-fed UV spectrograph

NASA Astrophysics Data System (ADS)

Tuttle, Sarah E.; Schiminovich, David; Milliard, Bruno; Grange, Robert; Martin, D. Christopher; Rahman, Shahinur; Deharveng, Jean-Michel; McLean, Ryan; Tajiri, Gordon; Matuszewski, M.

2008-07-01

FIREBall (Faint Intergalactic Redshifted Emission Balloon) had a successful first engineering flight in July of 2007 from Palestine, Texas. Here we detail the design and construction of the spectrograph. FIREBall consists of a 1m telescope coupled to a fiber-fed ultraviolet spectrograph flown on a short duration balloon. The spectrograph is designed to map hydrogen and metal line emission from the intergalactic medium at several redshifts below z=1, exploiting a small window in atmospheric oxygen absorption at balloon altitudes. The instrument is a wide-field IFU fed by almost 400 fibers. The Offner mount spectrograph is designed to be sensitive in the 195-215nm window accessible at our altitudes of 35-40km. We are able to observe Lyα, as well as OVI and CIV doublets, from 0.3 < z < 0.9. Observations of UV bright B stars and background measurements allow characterization of throughput for the entire system and will inform future flights.

Mapping the Extent of M82's outlfows with VIRUS-P

NASA Astrophysics Data System (ADS)

Indahl, Briana; Hill, Gary J.; Drory, Niv; McLinden, Emily

2017-06-01

Starburst-driven outflows (SBDOs) and other feedback processes play a critical role in the evolution of galaxies through the regulation and disruption of star formation. However, our ability to observe and quantify feedback from SBDOs directly has been limited by the inability to obtain the spectroscopy needed for physical diagnostics over the large areas of local SBDOs. We present integral field spectroscopy taken with the George and Cynthia Mitchell Spectrograph (VIRUS-P) on the 2.7 meter Harlan J. Smith Telescope at McDonald Observatory mapping the full extent of M82’s northern outflow out to ~12kpc covering ~139 square arcminutes. We measured line ratios ([OIII]/Hβ, [OI]/Hα, [NII]/Hα), [SII]/Hα) for each spaxel in our fields. Using Ionization Diagnostic Diagrams (IDDs) we spatially map shock dominated regions which we show trace the biconical structure of the outflow. M82 is a local galaxy (z~0.000677) and the classical example of a starburst galaxy with vigorous outflows. As a result it has been comprehensively studied for nearly 50 years. However, we present the most sensitive and extensive map of the warm ionized gas to date from the disk to the Hα cap at ~12kpc.

Evaluation of a Biometric Keystroke Typing Dynamics Computer Security System

DTIC Science & Technology

1992-03-01

intrusions, numerous computer systems have been threatened or destroyed by virus attacks. A recent example was the virus called " Michelangelo ," which...threatened to destroy all data on infected hard disks on the birthday of the artist Michelangelo , 6 March, in 1992. During the 1991 Persian Gulf War

9 CFR 113.209 - Rabies Vaccine, Killed Virus.

Code of Federal Regulations, 2010 CFR

2010-01-01

... immunogenicity of vaccine prepared with virus at the highest passage from the Master Seed shall be established in... the availability of this material at NARA, call 202-741-6030, or go to: http://www.archives.gov... observation period, the serial is unsatisfactory. (3) Potency test. Bulk or final container samples of...

A Student Assembled Spectrograph with a CCD Detector to Assist with Students' Understanding of Spectrometry

ERIC Educational Resources Information Center

Grove, T. T.; Masters, M. F.

2007-01-01

To help students develop an understanding of the proper use and function of spectrographs and monochromators we describe a student-assembled spectrograph using a "webcam" detector. The apparatus also works well as a low-cost demonstration, helping students make connections between an atomic spectrum observed by eye and a plot of the relative…

Effect of Training Japanese L1 Speakers in the Production of American English /r/ Using Spectrographic Visual Feedback

ERIC Educational Resources Information Center

Patten, Iomi; Edmonds, Lisa A.

2015-01-01

The present study examines the effects of training native Japanese speakers in the production of American /r/ using spectrographic visual feedback. Within a modified single-subject design, two native Japanese participants produced single words containing /r/ in a variety of positions while viewing live spectrographic feedback with the aim of…

X-ray spectrographic determination of cesium and rubidium

USGS Publications Warehouse

Axelrod, J.M.; Adler, I.

1957-01-01

An x-ray spectrographic method for the determination of rubidium and cesium was developed, using the internal-standard method and a four-channel flat-crystal spectrograph. The sensitivity is within 0.1% for cesia and 0.02% for rubidia; the precision is within 10% of the amount present. Results agree well with those obtained by flame photometry and by radio-activation.

Thirty-Meter Telescope: A Technical Study of the InfraRed Multiobject Spectrograph

NASA Astrophysics Data System (ADS)

U, Vivian; Dekany, R.; Mobasher, B.

2013-01-01

The InfraRed Multiobject Spectrograph (IRMS) is an adaptive optics (AO)-fed, reconfigurable near-infrared multi-object spectrograph and imager on the Thirty Meter Telescope (TMT). Its design is based on the MOSFIRE spectrograph currently operating on the Keck Observatory. As one of the first three first-light instruments on the TMT, IRMS is in a mini-conceptual design phase. Here we motivate the science goals of the instrument and present the anticipated sensitivity estimates based on the combination of MOSFIRE with the AO system NFIRAOS on TMT. An assessment of the IRMS on-instrument wavefront sensor performance and vignetting issue will also be discussed.

VizieR Online Data Catalog: The ELM survey. VII. 15 new ELM white dwarf cand. (Brown+, 2016)

NASA Astrophysics Data System (ADS)

Brown, W. R.; Gianninas, A.; Kilic, M.; Kenyon, S. J.; Allende Prieto, C.

2016-05-01

We present observations of 15 new extremely low-mass white dwarf (ELM WD) candidates. Ten objects are selected by color for our targeted spectroscopic ELM Survey program as described in Brown et al. (2012ApJ...744..142B). Five objects come from follow-up spectroscopy of the completed Hypervelocity Star survey. We acquire spectra for the 15 ELM WD candidates using the Blue Channel spectrograph on the 6.5m MMT telescope. We configured the Blue Channel spectrograph to obtain 3650-4500Å spectral coverage with 1.0Å spectral resolution. We acquire additional spectra for 5 objects using the KOSMOS spectrograph on the Kitt Peak National Observatory 4m Mayall telescope on program numbers 2014B-0119 and 2015A-0082. We configured the KOSMOS spectrograph to obtain 3500-6200Å spectral coverage with 2.0Å spectral resolution. We also acquire spectra for objects with g<17mag using the FAST spectrograph on the Fred Lawrence Whipple Observatory 1.5m Tillinghast telescope. We configured the FAST spectrograph to obtain 3500-5500Å spectral coverage with 1.7Å spectral resolution. (3 data files).

Virus-PLoc: a fusion classifier for predicting the subcellular localization of viral proteins within host and virus-infected cells.

PubMed

Shen, Hong-Bin; Chou, Kuo-Chen

2007-02-15

Viruses can reproduce their progenies only within a host cell, and their actions depend both on its destructive tendencies toward a specific host cell and on environmental conditions. Therefore, knowledge of the subcellular localization of viral proteins in a host cell or virus-infected cell is very useful for in-depth studying of their functions and mechanisms as well as designing antiviral drugs. An analysis on the Swiss-Prot database (version 50.0, released on May 30, 2006) indicates that only 23.5% of viral protein entries are annotated for their subcellular locations in this regard. As for the gene ontology database, the corresponding percentage is 23.8%. Such a gap calls for the development of high throughput tools for timely annotating the localization of viral proteins within host and virus-infected cells. In this article, a predictor called "Virus-PLoc" has been developed that is featured by fusing many basic classifiers with each engineered according to the K-nearest neighbor rule. The overall jackknife success rate obtained by Virus-PLoc in identifying the subcellular compartments of viral proteins was 80% for a benchmark dataset in which none of proteins has more than 25% sequence identity to any other in a same location site. Virus-PLoc will be freely available as a web-server at http://202.120.37.186/bioinf/virus for the public usage. Furthermore, Virus-PLoc has been used to provide large-scale predictions of all viral protein entries in Swiss-Prot database that do not have subcellular location annotations or are annotated as being uncertain. The results thus obtained have been deposited in a downloadable file prepared with Microsoft Excel and named "Tab_Virus-PLoc.xls." This file is available at the same website and will be updated twice a year to include the new entries of viral proteins and reflect the continuous development of Virus-PLoc. 2006 Wiley Periodicals, Inc.

Single Mode, Extreme Precision Doppler Spectrographs

NASA Astrophysics Data System (ADS)

Schwab, Christian; Leon-Saval, Sergio G.; Betters, Christopher H.; Bland-Hawthorn, Joss; Mahadevan, Suvrath

2014-04-01

The `holy grail' of exoplanet research today is the detection of an earth-like planet: a rocky planet in the habitable zone around a main-sequence star. Extremely precise Doppler spectroscopy is an indispensable tool to find and characterize earth-like planets; however, to find these planets around solar-type stars, we need nearly one order of magnitude better radial velocity (RV) precision than the best current spectrographs provide. Recent developments in astrophotonics (Bland-Hawthorn & Horton 2006, Bland-Hawthorn et al. 2010) and adaptive optics (AO) enable single mode fiber (SMF) fed, high resolution spectrographs, which can realize the next step in precision. SMF feeds have intrinsic advantages over multimode fiber or slit coupled spectrographs: The intensity distribution at the fiber exit is extremely stable, and as a result the line spread function of a well-designed spectrograph is fully decoupled from input coupling conditions, like guiding or seeing variations (Ihle et al. 2010). Modal noise, a limiting factor in current multimode fiber fed instruments (Baudrand & Walker 2001), can be eliminated by proper design, and the diffraction limited input to the spectrograph allows for very compact instrument designs, which provide excellent optomechanical stability. A SMF is the ideal interface for new, very precise wavelength calibrators, like laser frequency combs (Steinmetz et al. 2008, Osterman et al. 2012), or SMF based Fabry-Perot Etalons (Halverson et al. 2013). At near infrared wavelengths, these technologies are ready to be implemented in on-sky instruments, or already in use. We discuss a novel concept for such a spectrograph.

Ebola virus. Two-pore channels control Ebola virus host cell entry and are drug targets for disease treatment.

PubMed

Sakurai, Yasuteru; Kolokoltsov, Andrey A; Chen, Cheng-Chang; Tidwell, Michael W; Bauta, William E; Klugbauer, Norbert; Grimm, Christian; Wahl-Schott, Christian; Biel, Martin; Davey, Robert A

2015-02-27

Ebola virus causes sporadic outbreaks of lethal hemorrhagic fever in humans, but there is no currently approved therapy. Cells take up Ebola virus by macropinocytosis, followed by trafficking through endosomal vesicles. However, few factors controlling endosomal virus movement are known. Here we find that Ebola virus entry into host cells requires the endosomal calcium channels called two-pore channels (TPCs). Disrupting TPC function by gene knockout, small interfering RNAs, or small-molecule inhibitors halted virus trafficking and prevented infection. Tetrandrine, the most potent small molecule that we tested, inhibited infection of human macrophages, the primary target of Ebola virus in vivo, and also showed therapeutic efficacy in mice. Therefore, TPC proteins play a key role in Ebola virus infection and may be effective targets for antiviral therapy. Copyright © 2015, American Association for the Advancement of Science.

The Role of Bacterial Chaperones in the Circulative Transmission of Plant Viruses by Insect Vectors

PubMed Central

Kliot, Adi; Ghanim, Murad

2013-01-01

Persistent circulative transmission of plant viruses involves complex interactions between the transmitted virus and its insect vector. Several studies have shown that insect vector proteins are involved in the passage and the transmission of the virus. Interestingly, proteins expressed by bacterial endosymbionts that reside in the insect vector, were also shown to influence the transmission of these viruses. Thus far, the transmission of two plant viruses that belong to different virus genera was shown to be facilitated by a bacterial chaperone protein called GroEL. This protein was shown to be implicated in the transmission of Potato leafroll virus (PLRV) by the green peach aphid Myzus persicae, and the transmission of Tomato yellow leaf curl virus (TYLCV) by the sweetpotato whitefly Bemisia tabaci. These tri-trophic levels of interactions and their possible evolutionary implications are reviewed. PMID:23783810

Spectra of Th/Ar and U/Ne hollow cathode lamps for spectrograph calibration

NASA Astrophysics Data System (ADS)

Nave, Gillian; Shlosberg, Ariel; Kerber, Florian; Den Hartog, Elizabeth; Neureiter, Bianca

2018-01-01

Low-current Th/Ar hollow cathode lamps have long been used for calibration of astronomical spectrographs on ground-based telescopes. Thorium is an attractive element for calibration as it has a single isotope, has narrow spectral lines, and has a dense spectrum covering the whole of the visible region. However, the high density of the spectrum that makes it attractive for calibrating high-resolution spectrographs is a detriment for lower resolution spectrographs and this is not obvious by examination of existing linelists. In addition, recent changes in regulations regarding the handling of thorium have led to a degradation in the quality of Th/Ar calibration lamps, with contamination by molecular ThO lines that are strong enough to obscure the calibration lines of interest.We are pursuing two approaches to these problems. First, we have expanded and improved the NIST Standard Reference Database 161, "Spectrum of Th-Ar Hollow Cathode Lamps" to cover the region 272 nm to 5500 nm. Spectra of hollow cathode lamps at up to 3 different currents can now be displayed simultaneously. Interactive zooming and the ability to convolve any of the spectra with a Gaussian or uploaded instrument profile enable the user to see immediately what the spectrum would look like at the particular resolution of their spectrograph. Second, we have measured the spectrum of a recent, contaminated Th/Ar hollow cathode lamp using a high-resolution Echelle spectrograph (Madison Wisconsin) at a resolving power (R~ 250,000). This significantly exceeds the resolving power of most astronomical spectrographs and resolves many of the molecular lines of ThO. With these spectra we are measuring and calibrating the positions of these molecular lines in order to make them suitable for spectrograph calibration.In the near infrared region, U/Ne hollow cathode lamps give a higher density of calibration lines than Th/Ar lamps and will be implemented on the upgraded CRIRES+ spectrograph on ESO’s Very Large Telescope in Chile. A new atlas of the U/Ne spectrum as measured by CRIRES will be presented.

Commissioning the Robert Stobie Spectrograph on the 11-meter Southern African Large Telescope (SALT)

NASA Astrophysics Data System (ADS)

Hooper, Eric Jon; Nordsieck, K.; Williams, T.; Buckley, D.; SALT Operations Group; UW-Madison RSS Commissioning Group

2012-01-01

The Southern African Large Telescope (SALT) is an 11-meter optical and near-infrared telescope located in South Africa. It is operated by an international consortium led by South Africa and consisting of partners in the U.S., Europe, India, and New Zealand. After some initial telescope image quality problems were fixed, one of the main workhorse instruments called the Robert Stobie Spectrograph began checkout and commissioning in April, 2011. All of the instrument modes have been shown to be operational, and some of them are now in routine use. Shared-risk science observations began in September, 2011, alongside ongoing commissioning of the more unusual modes of this very versatile and complex instrument. The RSS provides numerous capabilities in a compact prime-focus design with an 8 arcminute field of view: • Long-slit spectroscopy. Six gratings provide resolving powers ranging from 800 to 11,000 and wavelength coverage from the blue atmospheric cutoff (320 nm) to around 1000 nm. • Multi-object spectroscopy using laser-cut slit masks. • High speed spectroscopy. By restricting the field of view in a slot mode, spectra can be read out as rapidly as 10 Hz. • Fixed band imaging. In addition to providing help with target acquisition, the RSS imaging mode is a powerful narrow-band imaging system, with a suite of narrow-band filters nearly continuously covering the wavelength range 430 - 900 nm. • Fabry-Perot imaging. The system can operate with either one or two etalons, providing a range in spectral resolving power from 250 to 10,000 over 430- 900 nm. • Polarimetry. All of the modes listed above also support polarimetric modes (linear and circular). Two next-generation instruments are under construction: a high-resolution fiber-fed spectrograph with resolving power reaching 65,000; and a near-infrared sibling of RSS, which will extend the spectral coverage to 1.7 microns.

Understanding the spreading patterns of mobile phone viruses.

PubMed

Wang, Pu; González, Marta C; Hidalgo, César A; Barabási, Albert-László

2009-05-22

We modeled the mobility of mobile phone users in order to study the fundamental spreading patterns that characterize a mobile virus outbreak. We find that although Bluetooth viruses can reach all susceptible handsets with time, they spread slowly because of human mobility, offering ample opportunities to deploy antiviral software. In contrast, viruses using multimedia messaging services could infect all users in hours, but currently a phase transition on the underlying call graph limits them to only a small fraction of the susceptible users. These results explain the lack of a major mobile virus breakout so far and predict that once a mobile operating system's market share reaches the phase transition point, viruses will pose a serious threat to mobile communications.

HIV Integration at Certain Sites in Host DNA Is Linked to the Expansion and Persistence of Infected Cells | Poster

Cancer.gov

Editor’s note: This article was originally published on the Center for Cancer Research website. When the Human Immunodeficiency Virus (HIV) infects a cell, the virus inserts a copy of its genetic material into the host cell’s DNA. The inserted genetic material, which is also called a provirus, is used to produce new viruses. Because the viral DNA can be inserted at many sites

Review of influenza A virus in swine worldwide: a call for increased surveillance and research

USDA-ARS?s Scientific Manuscript database

Surveillance for influenza A viruses (IAV) circulating in pigs and other non-human mammals has been chronically underfunded and virtually nonexistent in many areas of the world. This deficit continues in spite of our knowledge that influenza is a disease shared between humans and pigs since at least...

Salient lesions in domestic ruminants infected with the emerging so-called Schmallenberg virus in Germany.

PubMed

Herder, V; Wohlsein, P; Peters, M; Hansmann, F; Baumgärtner, W

2012-07-01

The so-called Schmallenberg virus (SBV), first detected in a German town of the same name in October 2011, is a novel emerging orthobunyavirus in Europe causing malformations and severe economic loss in ruminants. This report describes lesions in 40 sheep, 2 goats, and 16 cattle naturally infected with SBV as determined by real-time quantitative reverse transcription polymerase chain reaction. The most common macroscopic changes were arthrogryposis, vertebral malformations, brachygnathia inferior, and malformations of the central nervous system, including hydranencephaly, porencephaly, hydrocephalus, cerebellar hypoplasia, and micromyelia. Histologic lesions included lymphohistiocytic meningoencephalomyelitis in some cases, glial nodules mainly in the mesencephalon and hippocampus of lambs and goats, and neuronal degeneration and necrosis mainly in the brain stem of calves. Micromyelia was characterized by a loss of gray and white matter, with few neurons remaining in the ventral horn in calves. The skeletal muscles had myofibrillar hypoplasia in lambs and calves. The lesions of SBV-associated abortion and perinatal death are similar to those attributed to Akabane virus and other viruses in the Simbu group of bunyaviruses.

GRACES, the Gemini remote access CFHT ESPaDOnS spectrograph: initial design and testing

NASA Astrophysics Data System (ADS)

Tollestrup, Eric V.; Pazder, John; Barrick, Gregory; Martioli, Eder; Schiavon, Ricardo; Anthony, André; Halman, Mark; Veillet, Christian

2012-09-01

The Gemini Remote Access CFHT ESPaDOnS Spectrograph (GRACES) is an innovative instrumentation experiment that will demonstrate if ESPaDOnS, a bench-mounted high-resolution optical spectrograph at CFHT, can be fed by a 270-m long fiber from the Gemini-North telescope with low enough losses to remain competitive with conventional spectrographs on other 8 to 10-m telescopes. Detailed simulations have shown that GRACES should be more sensitive than the HIRES spectrograph at Keck Observatory at wavelengths longer than about 600-700 nm. This result is possible by using FPB-type of optical fibers made by Polymicro Technologies and by keeping the critical focal ratio degradation (FRD) losses to less than 10%. Laboratory tests on these FPB optical fibers are underway and show that for 36-m lengths that the FRD losses are as low as 0.8% with a repeatability of 1%. Tests are currently underway on 280-m lengths.

HESP: Instrument control, calibration and pipeline development

NASA Astrophysics Data System (ADS)

Anantha, Ch.; Roy, Jayashree; Mahesh, P. K.; Parihar, P. S.; Sangal, A. K.; Sriram, S.; Anand, M. N.; Anupama, G. C.; Giridhar, S.; Prabhu, T. P.; Sivarani, T.; Sundararajan, M. S.

Hanle Echelle SPectrograph (HESP) is a fibre-fed, high resolution (R = 30,000 and 60,000) spectrograph being developed for the 2m HCT telescope at IAO, Hanle. The major components of the instrument are a) Cassegrain unit b) Spectrometer instrument. An instrument control system interacting with a guiding unit at Cassegrain interface as well as handling spectrograph functions is being developed. An on-axis auto-guiding using the spill-over angular ring around the input pinhole is also being developed. The stellar light from the Cassegrain unit is taken to the spectrograph using an optical fiber which is being characterized for spectral transmission, focal ratio degradation and scrambling properties. The design of the thermal enclosure and thermal control for the spectrograph housing is presented. A data pipeline for the entire Echelle spectral reduction is being developed. We also plan to implement an instrument physical model based calibration into the main data pipeline and in the maintenance and quality control operations.

Reconstructive correction of aberrations in nuclear particle spectrographs

DOE Office of Scientific and Technical Information (OSTI.GOV)

Berz, M.; Joh, K.; Nolen, J.A.

A method is presented that allows the reconstruction of trajectories in particle spectrographs and the reconstructive correction of residual aberrations that otherwise limit the resolution. Using a computed or fitted high order transfer map that describes the uncorrected aberrations of the spectrograph, it is possible to calculate a map via an analytic recursion relation that allows the computation of the corrected data of interest such as reaction energy and scattering angle as well as the reconstructed trajectories in terms of position measurements in two planes near the focal plane. The technique is only limited by the accuracy of the positionmore » measurements, the incoherent spot sizes, and the accuracy of the transfer map. In practice the method can be expressed as an inversion of a nonlinear map and implemented in the differential algebraic framework. The method is applied to correct residual aberrations in the S800 spectrograph which is under construction at the National Superconducting Cyclotron Laboratory at Michigan State University and to two other high resolution spectrographs.« less

CARD games between virus and host get a new player.

PubMed

Johnson, Cynthia L; Gale, Michael

2006-01-01

A growing family of cellular proteins encoding the caspase activation and recruitment domain (CARD) has a crucial role in immunity by sensing virus infection and signaling antiviral immune defenses. Four independent studies have identified a novel CARD-containing protein, variously called IPS-1, MAVS, VISA and Cardif, which is an essential signaling adaptor of the host defense mediating CARD-CARD interactions with retinoic acid inducible gene-I (RIG-I) and melanoma differentiation-associated gene 5 (MDAS), sensors of virus infection. Disruption of this novel signaling pathway by hepatitis C virus (HCV) might provide a foundation for viral persistence.

Optical design of the SuMIRe/PFS spectrograph

NASA Astrophysics Data System (ADS)

Pascal, Sandrine; Vives, Sébastien; Barkhouser, Robert; Gunn, James E.

2014-07-01

The SuMIRe Prime Focus Spectrograph (PFS), developed for the 8-m class SUBARU telescope, will consist of four identical spectrographs, each receiving 600 fibers from a 2394 fiber robotic positioner at the telescope prime focus. Each spectrograph includes three spectral channels to cover the wavelength range [0.38-1.26] um with a resolving power ranging between 2000 and 4000. A medium resolution mode is also implemented to reach a resolving power of 5000 at 0.8 um. Each spectrograph is made of 4 optical units: the entrance unit which produces three corrected collimated beams and three camera units (one per spectral channel: "blue, "red", and "NIR"). The beam is split by using two large dichroics; and in each arm, the light is dispersed by large VPH gratings (about 280x280mm). The proposed optical design was optimized to achieve the requested image quality while simplifying the manufacturing of the whole optical system. The camera design consists in an innovative Schmidt camera observing a large field-of-view (10 degrees) with a very fast beam (F/1.09). To achieve such a performance, the classical spherical mirror is replaced by a catadioptric mirror (i.e meniscus lens with a reflective surface on the rear side of the glass, like a Mangin mirror). This article focuses on the optical architecture of the PFS spectrograph and the perfornance achieved. We will first described the global optical design of the spectrograph. Then, we will focus on the Mangin-Schmidt camera design. The analysis of the optical performance and the results obtained are presented in the last section.

Zika Virus: Can India Win the Fight?

PubMed Central

Singh, Tulika

2017-01-01

Zika virus is an emerging arbovirus of public health importance transmitted by Aedes mosquito which also transmits dengue, chikungunya and yellow fever. The disease has been spreading at an alarming rate in Africa, Pacific Islands, and the Americas. Given the expansion of environments where mosquitoes can live and breed, facilitated by urbanization and globalization, there is potential for major urban epidemics of Zika virus disease to occur globally. World Health Organization (WHO) has declared Zika virus disease to be a Public Health Emergency of International Concern (PHEIC). Our failed attempts to control dengue epidemics in the past call for concern and we need to be to prepared to fight Zika virus before it arrives at our doors. PMID:28553020

Social Communication and Vocal Recognition in Free-Ranging Rhesus Monkeys

NASA Astrophysics Data System (ADS)

Rendall, Christopher Andrew

Kinship and individual identity are key determinants of primate sociality, and the capacity for vocal recognition of individuals and kin is hypothesized to be an important adaptation facilitating intra-group social communication. Research was conducted on adult female rhesus monkeys on Cayo Santiago, Puerto Rico to test this hypothesis for three acoustically distinct calls characterized by varying selective pressures on communicating identity: coos (contact calls), grunts (close range social calls), and noisy screams (agonistic recruitment calls). Vocalization playback experiments confirmed a capacity for both individual and kin recognition of coos, but not screams (grunts were not tested). Acoustic analyses, using traditional spectrographic methods as well as linear predictive coding techniques, indicated that coos (but not grunts or screams) were highly distinctive, and that the effects of vocal tract filtering--formants --contributed more to statistical discriminations of both individuals and kin groups than did temporal or laryngeal source features. Formants were identified from very short (23 ms.) segments of coos and were stable within calls, indicating that formant cues to individual and kin identity were available throughout a call. This aspect of formant cues is predicted to be an especially important design feature for signaling identity efficiently in complex acoustic environments. Results of playback experiments involving manipulated coo stimuli provided preliminary perceptual support for the statistical inference that formant cues take precedence in facilitating vocal recognition. The similarity of formants among female kin suggested a mechanism for the development of matrilineal vocal signatures from the genetic and environmental determinants of vocal tract morphology shared among relatives. The fact that screams --calls strongly expected to communicate identity--were not individually distinctive nor recognized suggested the possibility that their acoustic structure and role in signaling identity might be constrained by functional or morphological design requirements associated with their role in signaling submission.

PRAXIS: low thermal emission high efficiency OH suppressed fibre spectrograph

NASA Astrophysics Data System (ADS)

Content, Robert; Bland-Hawthorn, Joss; Ellis, Simon; Gers, Luke; Haynes, Roger; Horton, Anthony; Lawrence, Jon; Leon-Saval, Sergio; Lindley, Emma; Min, Seong-Sik; Shortridge, Keith; Staszak, Nick; Trinh, Christopher; Xavier, Pascal; Zhelem, Ross

2014-07-01

PRAXIS is a second generation instrument that follows on from GNOSIS, which was the first instrument using fibre Bragg gratings for OH suppression to be deployed on a telescope. The Bragg gratings reflect the NIR OH lines while being transparent to the light between the lines. This gives in principle a much higher signal-noise ratio at low resolution spectroscopy but also at higher resolutions by removing the scattered wings of the OH lines. The specifications call for high throughput and very low thermal and detector noise so that PRAXIS will remain sky noise limited even with the low sky background levels remaining after OH suppression. The optical and mechanical designs are presented. The optical train starts with fore-optics that image the telescope focal plane on an IFU which has 19 hexagonal microlenses each feeding a multi-mode fibre. Seven of these fibres are attached to a fibre Bragg grating OH suppression system while the others are reference/acquisition fibres. The light from each of the seven OH suppression fibres is then split by a photonic lantern into many single mode fibres where the Bragg gratings are imprinted. Another lantern recombines the light from the single mode fibres into a multi-mode fibre. A trade-off was made in the design of the IFU between field of view and transmission to maximize the signal-noise ratio for observations of faint, compact objects under typical seeing. GNOSIS used the pre-existing IRIS2 spectrograph while PRAXIS will use a new spectrograph specifically designed for the fibre Bragg grating OH suppression and optimised for 1.47 μm to 1.7 μm (it can also be used in the 1.09 μm to 1.26 μm band by changing the grating and refocussing). This results in a significantly higher transmission due to high efficiency coatings, a VPH grating at low incident angle and optimized for our small bandwidth, and low absorption glasses. The detector noise will also be lower thanks to the use of a current generation HAWAII-2RG detector. Throughout the PRAXIS design, from the fore-optics to the detector enclosure, special care was taken at every step along the optical path to reduce thermal emission or stop it leaking into the system. The spectrograph design itself was particularly challenging in this aspect because practical constraints required that the detector and the spectrograph enclosures be physically separate with air at ambient temperature between them. At present, the instrument uses the GNOSIS fibre Bragg grating OH suppression unit. We intend to soon use a new OH suppression unit based on multicore fibre Bragg gratings which will allow an increased field of view per fibre. Theoretical calculations show that the gain in interline sky background signal-noise ratio over GNOSIS may very well be as high as 9 with the GNOSIS OH suppression unit and 17 with the multicore fibre OH suppression unit.

WISDOM: the WIYN spectrograph for Doppler monitoring: a NASA-NSF concept for an extreme precision radial velocity instrument in support of TESS

NASA Astrophysics Data System (ADS)

Fżrész, Gábor; Simcoe, Robert; Barnes, Stuart I.; Buchhave, Lars A.; Egan, Mark; Foster, Rick; Hellickson, Tim; Malonis, Andrew; Phillips, David; Shectman, Stephen; Walsworth, Ronald; Winn, Josh; Woods, Deborah

2016-08-01

The Kepler mission highlighted that precision radial velocity (PRV) follow-up is a real bottleneck in supporting transiting exoplanet surveys. The limited availability of PRV instruments, and the desire to break the "1 m/s" precision barrier, prompted the formation of a NASA-NSF collaboration `NN-EXPLORE' to call for proposals designing a new Extreme Precision Doppler Spectrograph (EPDS). By securing a significant fraction of telescope time on the 3.5m WIYN at Kitt Peak, and aiming for unprecedented long-term precision, the EPDS instrument will provide a unique tool for U.S. astronomers in characterizing exoplanet candidates identified by TESS. One of the two funded instrument concept studies is led by the Massachusetts Institute of Technology, in consortium with Lincoln Laboratories, Harvard-Smithsonian Center for Astrophysics and the Carnegie Observatories. This paper describes the instrument concept WISDOM (WIYN Spectrograph for DOppler Monitoring) prepared by this team. WISDOM is a fiber fed, environmentally controlled, high resolution (R=110k), asymmetric white-pupil echelle spectrograph, covering a wide 380-1300nm wavelength region. Its R4 and R6 echelle gratings provide the main dispersion, symmetrically mounted on either side of a vertically aligned, vacuum-enclosed carbon fiber optical bench. Each grating feeds two cameras and thus the resulting wavelength range per camera is narrow enough that the VPHG cross-dispersers and employed anti-reflection coatings are highly efficient. The instrument operates near room temperature, and so thermal background for the near-infrared arm is mitigated by thermal blocking filters and a short (1.7μm) cutoff HgCdTe detector. To achieve high resolution while maintaining small overall instrument size (100/125mm beam diameter), imposed by the limited available space within the observatory building, we chose to slice the telescope pupil 6 ways before coupling light into fibers. An atmospheric dispersion corrector and fast tip-tilt system assures maximal light gathering within the 1.2″ entrance aperture. The six octagonal fibers corresponding to each slice of the pupil employ ball-lens double scramblers to stabilize the near- and far-fields. Three apiece are coupled into each of two rectangular fibers, to mitigate modal nose and present a rectilinear illumination pattern at the spectrograph's slit plane. Wavelength solutions are derived from ThAr lamps and an extremely wide coverage dual-channel laser frequency comb. Data is reduced on the fly for evaluation by a custom pipeline, while daily archives and extended scope data reduction products are stored on NExScI servers, also managing archives and access privileges for GTO and GO programs. Note: individual papers, submitted along this main paper, describe the details of subsystems such as the optical design (Barnes et al., 9908-247), the fiber link design (Fűrész et al., 9908-281), and the pupil slicer (Egan et al., 9912-183).

HIV Integration at Certain Sites in Host DNA is Linked to the Expansion and Persistence of Infected Cells | Center for Cancer Research

Cancer.gov

When the Human Immunodeficiency Virus (HIV) infects a cell, the virus inserts a copy of its genetic material into the host cell’s DNA. The inserted genetic material, which is also called a provirus, is used to produce new viruses. Because the viral DNA can be inserted at many sites in the host cell DNA, the site of integration marks each infected cell. Patients infected with

4MOST fiber feed preliminary design: prototype testing and performance

NASA Astrophysics Data System (ADS)

Haynes, Dionne M.; Kelz, Andreas; Barden, Samuel C.; Bauer, Svend-Marian; Ehrlich, Katjana; Haynes, Roger; Jahn, Thomas; Saviauk, Allar; de Jong, Roelof S.

2016-08-01

The 4MOST instrument is a multi-object-spectrograph for the ESO-VISTA telescope. The 4MOST fiber feed subsystem is composed of a fiber positioner (AESOP) holding 2436 science fibers based on the Echidna tilting spine concept, and the fiber cable, which feeds two low-resolution spectrographs (1624 fibers) and one high-resolution spectrograph (812 fibers). In order to optimize the fiber feed subsystem design and provide essential information required for the spectrograph design, prototyping and testing has been undertaken. In this paper we give an overview of the current fiber feed subsystem design and present the preliminary FRD, scrambling, throughput and system performance impact results for: maximum and minimum spine tilt, fiber connectors, cable de-rotator simulator for fiber cable lifetime tests.

VizieR Online Data Catalog: The ELM survey. VI. 11 new ELM WD binaries (Gianninas+, 2015)

NASA Astrophysics Data System (ADS)

Gianninas, A.; Kilic, M.; Brown, W. R.; Canton, P.; Kenyon, S. J.

2016-02-01

We used the 6.5m MMT telescope equipped with the Blue Channel spectrograph, the 200 inch Hale telescope equipped with the Double spectrograph, the Kitt Peak National Observatory 4m telescope equipped with the R-C spectrograph, and more recently with Kitt Peak Ohio State Multi-Object Spectrograph (KOSMOS), to obtain spectroscopy of our 11 targets in several observing runs. We have also been obtaining radial-velocity measurements for candidates from other sources including the Large Sky Area Multi-Object Spectroscopy Telescope (LAMOST). Those 11 new Extremely low-mass white dwarf (ELM WD) binaries bring the total of ELM WDs identified by the ELM Survey up to 73. (4 data files).

The NASA Exoplanet Science Institute Archives: KOA and NStED

NASA Astrophysics Data System (ADS)

Berriman, G. B.; Ciardi, D.; Abajian, M.; Barlow, T.; Bryden, G.; von Braun, K.; Good, J.; Kane, S.; Kong, M.; Laity, A.; Lynn, M.; Elroy, D. M.; Plavchan, P.; Ramirez, S.; Schmitz, M.; Stauffer, J.; Wyatt, P.; Zhang, A.; Goodrich, R.; Mader, J.; Tran, H.; Tsubota, M.; Beekley, A.; Berukoff, S.; Chan, B.; Lau, C.; Regelson, M.; Saucedo, M.; Swain, M.

2010-12-01

The NASA Exoplanet Science Institute (NExScI) maintains a series of archival services in support of NASA’s planet finding and characterization goals. Two of the larger archival services at NExScI are the Keck Observatory Archive (KOA) and the NASA Star and Exoplanet Database (NStED). KOA, a collaboration between the W. M. Keck Observatory and NExScI, serves raw data from the High Resolution Echelle Spectrograph (HIRES) and extracted spectral browse products. As of June 2009, KOA hosts over 28 million files (4.7 TB) from over 2,000 nights. In Spring 2010, it will begin to serve data from the Near-Infrared Echelle Spectrograph (NIRSPEC). NStED is a general purpose archive with the aim of providing support for NASA’s planet finding and characterization goals, and stellar astrophysics. There are two principal components of NStED: a database of (currently) all known exoplanets, and images; and an archive dedicated to high precision photometric surveys for transiting exoplanets. NStED is the US portal to the CNES mission CoRoT, the first space mission dedicated to the discovery and characterization of exoplanets. These archives share a common software and hardware architecture with the NASA/IPAC Infrared Science Archive (IRSA). The software architecture consists of standalone utilities that perform generic query and retrieval functions. They are called through program interfaces and plugged together to form applications through a simple executive library.

Transcriptomics reveals multiple resistance mechanisms against cotton leaf curl disease in a naturally immune cotton species, Gossypium arboreum

USDA-ARS?s Scientific Manuscript database

Cotton is an economically important crop affected by a number of abiotic and biotic stresses. Cotton leaf curl disease (CLCuD) is caused by virus in the genus Begomovirus (family Geminiviridae), collectively called cotton leaf curl viruses (CLCuVs). It is one of the most devastating virual diseases ...

Transcriptomic Analysis of Host Immune Response in the Skin of Chickens Infected with Marek's Disease Virus

USDA-ARS?s Scientific Manuscript database

Marek’s disease virus, a highly cell-associated oncogenic 'alpha-herpesvirus, is the causative agent of a T cell lymphoma and neuropathic disease called Marek’s disease. The skin is the only anatomical site where infectious enveloped cell-free virions are produced and shed into the environment. Stud...

Genetic diversity of avian paramyxovirus type 1: Proposal for a unified nomenclature and classification system of Newcastle disease virus genotypes

USDA-ARS?s Scientific Manuscript database

Genetically diverse Newcastle disease virus (NDV) isolates circulate and cause disease in different geographic locations of the world. The differences found on the genome of distinct NDV isolates have been used to classify different isolates into genetic groups called genotypes or lineages. Both l...

Mutations in Ovis aries TMEM154 are associated with lower small ruminant lentivirus proviral concentration in one sheep flock

USDA-ARS?s Scientific Manuscript database

Small ruminant lentivirus (SRLV), also called ovine progressive pneumonia virus or maedi-visna, is present in 24% of U.S. sheep. Like human immunodeficiency virus, SRLV is a macrophage-tropic lentivirus that causes lifelong infection. The production impacts from SRLV are due to a range of disease sy...

The influence of incubation time on adenovirus quantitation in A549 cells by most probable number

EPA Science Inventory

Cell culture based assays used to detect waterborne viruses typically call for incubating the sample for at least two weeks in order to ensure that all the culturable virus present is detected. Historically, this estimate was based, at least in part, on the length of time used fo...

THE MULTI-OBJECT, FIBER-FED SPECTROGRAPHS FOR THE SLOAN DIGITAL SKY SURVEY AND THE BARYON OSCILLATION SPECTROSCOPIC SURVEY

DOE Office of Scientific and Technical Information (OSTI.GOV)

Smee, Stephen A.; Gunn, James E.; Uomoto, Alan

2013-07-12

We present the design and performance of the multi-object fiber spectrographs for the Sloan Digital Sky Survey (SDSS) and their upgrade for the Baryon Oscillation Spectroscopic Survey (BOSS). Originally commissioned in Fall 1999 on the 2.5-m aperture Sloan Telescope at Apache Point Observatory, the spectrographs produced more than 1.5 million spectra for the SDSS and SDSS-II surveys, enabling a wide variety of Galactic and extra-galactic science including the first observation of baryon acoustic oscillations in 2005. The spectrographs were upgraded in 2009 and are currently in use for BOSS, the flagship survey of the third-generation SDSS-III project. BOSS will measuremore » redshifts of 1.35 million massive galaxies to redshift 0.7 and Lyman-alpha absorption of 160,000 high redshift quasars over 10,000 square degrees of sky, making percent level measurements of the absolute cosmic distance scale of the Universe and placing tight constraints on the equation of state of dark energy. The twin multi-object fiber spectrographs utilize a simple optical layout with reflective collimators, gratings, all-refractive cameras, and state-of-the-art CCD detectors to produce hundreds of spectra simultaneously in two channels over a bandpass covering the near ultraviolet to the near infrared, with a resolving power R = \\lambda/FWHM ~ 2000. Building on proven heritage, the spectrographs were upgraded for BOSS with volume-phase holographic gratings and modern CCD detectors, improving the peak throughput by nearly a factor of two, extending the bandpass to cover 360 < \\lambda < 1000 nm, and increasing the number of fibers from 640 to 1000 per exposure. In this paper we describe the original SDSS spectrograph design and the upgrades implemented for BOSS, and document the predicted and measured performances.« less

Mini-Spec: A Compact, Fiber-Coupled, VPH Grating Spectrograph for Small Observatories

NASA Astrophysics Data System (ADS)

Nations, H. L.; Haynes, P.; Brewer, P.

2003-05-01

We report on the development and testing of what we believe to be the first VPH grating based spectrograph developed primarily for use at telescopes of modest aperture. To date, the most common instrument suite for such observatories is typically that of a CCD camera with attached filter wheel. While there is no doubt that a wide range of interesting and good science has been done with such instrumentation, the addition of a robust and easy to operate spectrograph would greatly increase the utility of such installations. While some commercial spectrographs exist for use on small telescopes, the authors have found them to be, with few exceptions, either inefficient, difficult for inexperienced students or amateurs to use, or not remotely operable. Correcting these deficiencies is thus the primary motivation for Mini-Spec. The design of Mini-Spec has been influenced by previous work the authors have done on a full-sized fiber-coupled spectrograph (Nations and Pierce, 2002). Mini-Spec uses some of those original design features, only reduced drastically in size. This size reduction (the spectrograph fits within a 7 inch cube), along with a much more careful choice of some critical components, has resulted in a dramatic reduction in cost. The spectrograph uses a highly efficient 1200 l/mm, 40 mm diameter vph grating on loan from Richard Rallison. Focus, central wavelength selection, and comparison lamps are all controlled via an RS-232 link and a custom Visual Basic GUI. Sample spectra of stellar and non-stellar targets will be presented along with a discussion of research projects admirably suited for this instrument. Funding for equipment has been provided by a NASA EPSCoR grant to PI Ron Canterna. HLN has been partially funded by a Wyoming Space Grant Faculty Fellowship.

Emerging viral diseases of Southeast Asia and the Western Pacific.

PubMed Central

Mackenzie, J. S.; Chua, K. B.; Daniels, P. W.; Eaton, B. T.; Field, H. E.; Hall, R. A.; Halpin, K.; Johansen, C. A.; Kirkland, P. D.; Lam, S. K.; McMinn, P.; Nisbet, D. J.; Paru, R.; Pyke, A. T.; Ritchie, S. A.; Siba, P.; Smith, D. W.; Smith, G. A.; van den Hurk, A. F.; Wang, L. F.; Williams, D. T.

2001-01-01

Over the past 6 years, a number of zoonotic and vectorborne viral diseases have emerged in Southeast Asia and the Western Pacific. Vectorborne disease agents discussed in this article include Japanese encephalitis, Barmah Forest, Ross River, and Chikungunya viruses. However, most emerging viruses have been zoonotic, with fruit bats, including flying fox species as the probable wildlife hosts, and these will be discussed as well. The first of these disease agents to emerge was Hendra virus, formerly called equine morbillivirus. This was followed by outbreaks caused by a rabies-related virus, Australian bat lyssavirus, and a virus associated with porcine stillbirths and malformations, Menangle virus. Nipah virus caused an outbreak of fatal pneumonia in pigs and encephalitis in humans in the Malay Peninsula. Most recently, Tioman virus has been isolated from flying foxes, but it has not yet been associated with animal or human disease. Of nonzoonotic viruses, the most important regionally have been enterovirus 71 and HIV. PMID:11485641

A Post-AGB Star in the Small Magellanic Cloud Observed with the Spitzer Infrared Spectrograph

DTIC Science & Technology

2006-10-23

spectral features, MSX SMC 029, in the Small Magellanic Cloud (SMC) usimg the low-resolution modules of the Infrared Spectrograph on the Spitzer Space ...029, in the Small Magellanic Cloud (SMC) using the low-resolution modules of the Infrared Spectrograph on the Spitzer Space Telescope. A cool dust... outer atmosphere expands and pulsates, pushing gas away from the star where it can cool and condense into dust grains. The resulting circumstellar dust

Experimental Study of an Advanced Concept of Moderate-resolution Holographic Spectrographs

NASA Astrophysics Data System (ADS)

Muslimov, Eduard; Valyavin, Gennady; Fabrika, Sergei; Musaev, Faig; Galazutdinov, Gazinur; Pavlycheva, Nadezhda; Emelianov, Eduard

2018-07-01

We present the results of an experimental study of an advanced moderate-resolution spectrograph based on a cascade of narrow-band holographic gratings. The main goal of the project is to achieve a moderately high spectral resolution with R up to 5000 simultaneously in the 4300–6800 Å visible spectral range on a single standard CCD, together with an increased throughput. The experimental study consisted of (1) resolution and image quality tests performed using the solar spectrum, and (2) a total throughput test performed for a number of wavelengths using a calibrated lab monochromator. The measured spectral resolving power reaches values over R > 4000 while the experimental throughput is as high as 55%, which agrees well with the modeling results. Comparing the obtained characteristics of the spectrograph under consideration with the best existing spectrographs, we conclude that the used concept can be considered as a very competitive and cheap alternative to the existing spectrographs of the given class. We propose several astrophysical applications for the instrument and discuss the prospect of creating its full-scale version.

Conceptual design for an AIUC multi-purpose spectrograph camera using DMD technology

NASA Astrophysics Data System (ADS)

Rukdee, S.; Bauer, F.; Drass, H.; Vanzi, L.; Jordan, A.; Barrientos, F.

2017-02-01

Current and upcoming massive astronomical surveys are expected to discover a torrent of objects, which need groundbased follow-up observations to characterize their nature. For transient objects in particular, rapid early and efficient spectroscopic identification is needed. In particular, a small-field Integral Field Unit (IFU) would mitigate traditional slit losses and acquisition time. To this end, we present the design of a Digital Micromirror Device (DMD) multi-purpose spectrograph camera capable of running in several modes: traditional longslit, small-field patrol IFU, multi-object and full-field IFU mode via Hadamard spectra reconstruction. AIUC Optical multi-purpose CAMera (AIUCOCAM) is a low-resolution spectrograph camera of R 1,600 covering the spectral range of 0.45-0.85 μm. We employ a VPH grating as a disperser, which is removable to allow an imaging mode. This spectrograph is envisioned for use on a 1-2 m class telescope in Chile to take advantage of good site conditions. We present design decisions and challenges for a costeffective robotized spectrograph. The resulting instrument is remarkably versatile, capable of addressing a wide range of scientific topics.

NOAO's next-generation optical spectrograph

NASA Astrophysics Data System (ADS)

Barden, Samuel C.; Harmer, Charles F.; Blakley, Rick D.; Parks, Rachel J.

2000-08-01

The National Optical Astronomy Observatory is developing a new, wide-field, imaging spectrograph for use on its existing 4-meter telescopes. This Next Generation Optical Spectrograph (NGOS) will utilize volume-phase holographic grating technology and will have a mosaiced detector array to image the spectra over a field of view that will be something like 10.5 by 42 arc-minutes on the sky. The overall efficiency of the spectrograph should be quite high allowing it to outperform the current RC spectrograph by factors of 10 to 20 and the Hydra multi-fiber instrument by a facto of fiber to ten per object. The operational range of the instrument will allow observations within the optical and near-IR regions. Spectral resolutions will go from R equals 1000 to at least R equals 5000 with 1.4 arc-second slits. The large size of this instrument, with a beam diameter of 200 mm and an overall length of nearly 3 meters, presents a significant challenge in mounting it at the Cassegrain location of the telescope. Design trades and options that allow it to fit are discussed.

Curved VPH gratings for novel spectrographs

NASA Astrophysics Data System (ADS)

Clemens, J. Christopher; O'Donoghue, Darragh; Dunlap, Bart H.

2014-07-01

The introduction of volume phase holographic (VPH) gratings into astronomy over a decade ago opened new possibilities for instrument designers. In this paper we describe an extension of VPH grating technology that will have applications in astronomy and beyond: curved VPH gratings. These devices can disperse light while simultaneously correcting aberrations. We have designed and manufactured two different kinds of convex VPH grating prototypes for use in off-axis reflecting spectrographs. One type functions in transmission and the other in reflection, enabling Offnerstyle spectrographs with the high-efficiency and low-cost advantages of VPH gratings. We will discuss the design process and the tools required for modelling these gratings along with the recording layout and process steps required to fabricate them. We will present performance data for the first convex VPH grating produced for an astronomical spectrograph.

Web-based multi-channel analyzer

DOEpatents

Gritzo, Russ E.

2003-12-23

The present invention provides an improved multi-channel analyzer designed to conveniently gather, process, and distribute spectrographic pulse data. The multi-channel analyzer may operate on a computer system having memory, a processor, and the capability to connect to a network and to receive digitized spectrographic pulses. The multi-channel analyzer may have a software module integrated with a general-purpose operating system that may receive digitized spectrographic pulses for at least 10,000 pulses per second. The multi-channel analyzer may further have a user-level software module that may receive user-specified controls dictating the operation of the multi-channel analyzer, making the multi-channel analyzer customizable by the end-user. The user-level software may further categorize and conveniently distribute spectrographic pulse data employing non-proprietary, standard communication protocols and formats.

Development of the MAMA Detectors for the Hubble Space Telescope Imaging Spectrograph

NASA Technical Reports Server (NTRS)

Timothy, J. Gethyn

1997-01-01

The development of the Multi-Anode Microchannel Array (MAMA) detector systems started in the early 1970's in order to produce multi-element detector arrays for use in spectrographs for solar studies from the Skylab-B mission. Development of the MAMA detectors for spectrographs on the Hubble Space Telescope (HST) began in the late 1970's, and reached its culmination with the successful installation of the Space Telescope Imaging Spectrograph (STIS) on the second HST servicing mission (STS-82 launched 11 February 1997). Under NASA Contract NAS5-29389 from December 1986 through June 1994 we supported the development of the MAMA detectors for STIS, including complementary sounding rocket and ground-based research programs. This final report describes the results of the MAMA detector development program for STIS.

CRISPR/Cas13a targeting of RNA virus in plants.

PubMed

Chaudhary, Kulbhushan

2018-05-19

This approach is quite promising to control plant viral diseases and create synthetic networks to better understand the structure/function relationship in RNA and proteins. Plant viruses are obligate intracellular parasites which causes enormous losses in crop yield worldwide. These viruses replicate into infected cells by highjacking host cellular machinery. Over the last two decades, diverse approaches such as conventional breeding, transgenic approach and gene silencing strategies have been used to control RNA viruses, but escaped due to high rate of mutation. Recently, a novel CRISPR enzyme, called Cas13a, has been used engineered to confer RNA viruses resistance in plants. Here, we summarize the recent breakthrough of CRISPR/Cas13a and its applications in RNA biology.

Particle Analysis Pitfalls

NASA Technical Reports Server (NTRS)

Hughes, David; Dazzo, Tony

2007-01-01

This viewgraph presentation reviews the use of particle analysis to assist in preparing for the 4th Hubble Space Telescope (HST) Servicing mission. During this mission the Space Telescope Imaging Spectrograph (STIS) will be repaired. The particle analysis consisted of Finite element mesh creation, Black-body viewfactors generated using I-DEAS TMG Thermal Analysis, Grey-body viewfactors calculated using Markov method, Particle distribution modeled using an iterative Monte Carlo process, (time-consuming); in house software called MASTRAM, Differential analysis performed in Excel, and Visualization provided by Tecplot and I-DEAS. Several tests were performed and are reviewed: Conformal Coat Particle Study, Card Extraction Study, Cover Fastener Removal Particle Generation Study, and E-Graf Vibration Particulate Study. The lessons learned during this analysis are also reviewed.

Galaxy Evolution Spectroscopic Explorer (GESE): Science Rationale, Optical Design, and Telescope Architecture

NASA Technical Reports Server (NTRS)

Heap, Sara R.; Gong, Qian; Hull, Tony; Purves, Lloyd

2014-01-01

One of the key goals of NASA’s astrophysics program is to answer the question: How did galaxies evolve into the spiral, elliptical, and irregular galaxies that we see today? We describe a space mission concept called Galaxy Evolution Spectroscopic Explorer (GESE) to help address this question by making a large ultraviolet spectroscopic survey of galaxies at a redshift, z approximately 1 (look-back time of approximately 8 billion years). GESE is a 1.5-m space telescope with an near-ultraviolet (NUV) multi-object slit spectrograph covering the spectral range, 0.2-0.4 micrometers (0.1-0.2 micrometers as emitted by galaxies at a redshift, z approximately 1) at a spectral resolution of delta lambda=6 A.

bHROS: A New High-Resolution Spectrograph Available on Gemini South

NASA Astrophysics Data System (ADS)

Margheim, S. J.; Gemini bHROS Team

2005-12-01

The Gemini bench-mounted High-Resolution Spectrograph (bHROS) is available for science programs beginning in 2006A. bHROS is the highest resolution (R=150,000) optical echelle spectrograph optimized for use on an 8-meter telescope. bHROS is fiber-fed via GMOS-S from the Gemini South focal plane and is available in both a dual-fiber Object/Sky mode and a single (larger) Object-only mode. Instrument characteristics and sample data taken during commissioning will be presented.

Hobby-Eberly Telescope Dark Energy Experiment Fiber Optic Testing System

NASA Astrophysics Data System (ADS)

Fuller, Lindsay

2011-01-01

The Hobby-Eberly Telescope Dark Energy Experiment (HETDEX) is a spectroscopic survey that will collect data from nearly one million Lyman-α emitting galaxies at a redshift of 1.8 < z < 3.8 in order to characterize dark energy. To accomplish this, over 33,000 optical fibers will feed light from these galaxies into 150 Visible Integral-Field Replicable Unit Spectrographs (VIRUS), an order of magnitude greater than has been done before. A fiber optic test bench has been constructed at the University of Texas at Austin in order to test the transmission and focal ratio degradation (FRD) of individual fibers at several wavelengths ranging from 350-600nm. Furthermore, the fiber optic bundles are undergoing extensive lifetime tests at the Center for Electromechanics on the university’s research campus which will simulate 10 years of motion on the Hobby-Eberly Telescope.

An Ultraviolet Spectrograph Concept for Exploring Ocean Worlds

NASA Astrophysics Data System (ADS)

Schindhelm, E. R.; Hendrix, A. R.; Fleming, B. T.

2018-05-01

UV spectroscopy can probe dust/ice composition of the surface or plumes via uniquely identifying features. We present a technology concept for a future planetary science UV multi-object imaging spectrograph.

Dark Matter Halos with VIRUS-P

NASA Astrophysics Data System (ADS)

Murphy, Jeremy; Gebhardt, K.

2010-05-01

We present new, two-dimensional stellar kinematic data on several of the most massive galaxies in the local universe. These data were taken with the integral field spectrograph, VIRUS-P, and extend to unprecedented radial distances. Once robust stellar kinematics are in hand, we run orbit-based axisymmetric dynamical models in order to constrain the stellar mass-to-light ratio and dark matter halo parameters. We have run a large set of dynamical models on the second rank galaxy in the Virgo cluster, M87, and find clear evidence for a massive dark matter halo. The two-dimensional stellar kinematics for several of our other targets, all first and second rank galaxies, are also presented. Dark matter halos are known to dominate the mass profile of elliptical galaxies somewhere between one to two effective radii, yet due to the low surface brightness at these radial distances, determining stellar dynamics is technologically challenging. To overcome this, constraints on the dark matter halo are often made with planetary nebulae or globular clusters at large radii. However, as results from different groups have returned contradictory results, it remains unclear whether different dynamical tracers always follow the stellar kinematics. Due to VIRUS-P's large field of view and on-sky fiber diameter, we are able to determine stellar kinematics at radial distances that overlap with other dynamical tracers. Understanding what the dynamics of stars, planetary nebula and globular clusters tell us about both the extent of the dark matter halo profile and the formation histories of the largest elliptical galaxies is a primary science driver for this work.

The first influenza pandemic of the new millennium

PubMed Central

Neumann, Gabriele; Kawaoka, Yoshihiro

2011-01-01

Please cite this paper as: Neumann G, Kawaoka Y. (2011) The first influenza pandemic of the new millennium. Influenza and Other Respiratory Viruses DOI: 10.1111/j.1750‐2659.2011.00202.x. In the spring of 2009, a novel influenza A virus of the H1N1 subtype emerged that transmitted efficiently among humans; by June of 2009, the outbreak reached pandemic status. The pandemic virus possesses six viral RNA segments from so‐called triple reassortant swine viruses that emerged in North American pig populations in the late 1990s and two viral RNA segments from Eurasian avian‐like swine influenza viruses. Most human infections with the virus have been mild; however, severe and fatal infections occurred among certain risk groups, but also among those without any known risk factors. Here, we summarize the evolutionary, epidemiological, clinical, and molecular findings on the pandemic virus. We also discuss the arsenal of antiviral compounds and vaccines available to prevent and treat infections with the virus. PMID:21477134

Virus-Clip: a fast and memory-efficient viral integration site detection tool at single-base resolution with annotation capability.

PubMed

Ho, Daniel W H; Sze, Karen M F; Ng, Irene O L

2015-08-28

Viral integration into the human genome upon infection is an important risk factor for various human malignancies. We developed viral integration site detection tool called Virus-Clip, which makes use of information extracted from soft-clipped sequencing reads to identify exact positions of human and virus breakpoints of integration events. With initial read alignment to virus reference genome and streamlined procedures, Virus-Clip delivers a simple, fast and memory-efficient solution to viral integration site detection. Moreover, it can also automatically annotate the integration events with the corresponding affected human genes. Virus-Clip has been verified using whole-transcriptome sequencing data and its detection was validated to have satisfactory sensitivity and specificity. Marked advancement in performance was detected, compared to existing tools. It is applicable to versatile types of data including whole-genome sequencing, whole-transcriptome sequencing, and targeted sequencing. Virus-Clip is available at http://web.hku.hk/~dwhho/Virus-Clip.zip.

[Effect of the Epstein-Barr virus on the nervous system].

PubMed

Kononenko, V V

2001-01-01

On the basis of a comprehensive examination of 12 patients with verified Epstein-Barr virus (EBV) infection it has been shown that this infection can be accompanied by acute and chronic affections of the central and peripheral nervous system. The pathogenesis of chronic EBV-infection involves autoimmune disorders, neurosensitization, a hazard of an injury to the muscular tissue. Chronic EBV-infection calls for differential diagnosis with other slow virus infections, systemic tumor afflictions, systemic diseases of the connective tissue. Acyclovir or valacyclovir can be recommended as treatment of acute and chronic EBV-infection.

Discrimination of Self and Non-Self Ribonucleic Acids

PubMed Central

Gebhardt, Anna; Laudenbach, Beatrice T.

2017-01-01

Most virus infections are controlled through the innate and adaptive immune system. A surprisingly limited number of so-called pattern recognition receptors (PRRs) have the ability to sense a large variety of virus infections. The reason for the broad activity of PRRs lies in the ability to recognize viral nucleic acids. These nucleic acids lack signatures that are present in cytoplasmic cellular nucleic acids and thereby marking them as pathogen-derived. Accumulating evidence suggests that these signatures, which are predominantly sensed by a class of PRRs called retinoic acid-inducible gene I (RIG-I)-like receptors and other proteins, are not unique to viruses but rather resemble immature forms of cellular ribonucleic acids generated by cellular polymerases. RIG-I-like receptors, and other cellular antiviral proteins, may therefore have mainly evolved to sense nonprocessed nucleic acids typically generated by primitive organisms and pathogens. This capability has not only implications on induction of antiviral immunity but also on the function of cellular proteins to handle self-derived RNA with stimulatory potential. PMID:28475460

Small Astronomy Payloads for Spacelab. [conferences

NASA Technical Reports Server (NTRS)

Bohlin, R. C. (Editor)

1975-01-01

The workshop to define feasible concepts in the UV-optical 1R area for Astronomy Spacelab Payloads is reported. Payloads proposed include: high resolution spectrograph, Schmidt camera spectrograph, UV telescope, and small infrared cryogenic telescope.

The optical design of the G-CLEF Spectrograph: the first light instrument for the GMT

NASA Astrophysics Data System (ADS)

Ben-Ami, Sagi; Epps, Harland; Evans, Ian; Mueller, Mark; Podgorski, William; Szentgyorgyi, Andrew

2016-08-01

The GMT-Consortium Large Earth Finder (G-CLEF), the first major light instrument for the GMT, is a fiber-fed, high-resolution echelle spectrograph. In the following paper, we present the optical design of G-CLEF. We emphasize the unique solutions derived for the spectrograph fiber-feed: the Mangin mirror that corrects the cylindrical field curvature, the implementation of VPH grisms as cross dispersers, and our novel solution for a multi-colored exposure meter. We describe the spectrograph blue and red cameras comprised of 7 and 8 elements respectively, with one aspheric surface in each camera, and present the expected echellogram imaged on the instrument focal planes. Finally, we present ghost analysis and mitigation strategy that takes into account both single reflection and double reflection back scattering from various elements in the optical train.

PRISM Spectrograph Optical Design

NASA Technical Reports Server (NTRS)

Chipman, Russell A.

1995-01-01

The objective of this contract is to explore optical design concepts for the PRISM spectrograph and produce a preliminary optical design. An exciting optical configuration has been developed which will allow both wavelength bands to be imaged onto the same detector array. At present the optical design is only partially complete because PRISM will require a fairly elaborate optical system to meet its specification for throughput (area*solid angle). The most complex part of the design, the spectrograph camera, is complete, providing proof of principle that a feasible design is attainable. This camera requires 3 aspheric mirrors to fit inside the 20x60 cm cross-section package. A complete design with reduced throughput (1/9th) has been prepared. The design documents the optical configuration concept. A suitable dispersing prism material, CdTe, has been identified for the prism spectrograph, after a comparison of many materials.

Time-of-flight mass spectrographs—From ions to neutral atoms

NASA Astrophysics Data System (ADS)

Möbius, E.; Galvin, A. B.; Kistler, L. M.; Kucharek, H.; Popecki, M. A.

2016-12-01

After their introduction to space physics in the mid 1980s time-of-flight (TOF) spectrographs have become a main staple in spaceborne mass spectrometry. They have largely replaced magnetic spectrometers, except when extremely high mass resolution is required to identify complex molecules, for example, in the vicinity of comets or in planetary atmospheres. In combination with electrostatic analyzers and often solid state detectors, TOF spectrographs have become key instruments to diagnose space plasma velocity distributions, mass, and ionic charge composition. With a variety of implementation schemes that also include isochronous electric field configurations, TOF spectrographs can respond to diverse science requirements. This includes a wide range in mass resolution to allow the separation of medium heavy isotopes or to simply provide distributions of the major species, such as H, He, and O, to obtain information on source tracers or mass fluxes. With a top-hat analyzer at the front end, or in combination with deflectors for three-axis stabilized spacecraft, the distribution function of ions can be obtained with good time resolution. Most recently, the reach of TOF ion mass spectrographs has been extended to include energetic neutral atoms. After selecting the arrival direction with mechanical collimation, followed by conversion to ions, adapted TOF sensors form a new branch of the spectrograph family tree. We review the requirements, challenges, and implementation schemes for ion and neutral atom spectrographs, including potential directions for the future, while largely avoiding overlap with complementary contributions in this special issue.

A Cross-Dispersed Medium-Resolution Spectrograph for Appalachian State Univeristy's 32-inch Telescope

NASA Astrophysics Data System (ADS)

Kluttz, K. A.; Gray, R. O.

2003-12-01

We have designed and constructed an economical medium-resolution spectrograph to be used on the 32-inch telescope of Appalachian State University's Dark Sky Observatory (DSO). The primary function of this instrument will be to study shell and emission-line stars. However, we will also use this instrument for chemical abundance studies and radial velocities. The basic design is that of an Ebert spectrograph with a single 6-inch mirror acting as both the collimator and camera. The primary dispersion is accomplished by a reflection grating, and order separation is accomplished by a grism. The spectrograph has been designed so that three wavelength regions are simultaneously imaged on the CCD camera. When the Hα line is centered in the third order, Hβ and lines of Fe II multiplet 42 -- often enhanced in shell and emission-line stars -- appear in the fourth order and the fifth order contains both the Ca II K & H lines. To facilitate abundance measurements, a telluric-free region near 6400Å is available in the third order by tilting the main diffraction grating. Preliminary tests have shown that the resolution of the new spectrograph is 0.42Å in the third order (R ≈ 15,000). This relatively high resolution will allow studies to be conducted at DSO which have not previously been possible with the instrumentation currently in use. Several optical components for this spectrograph were purchased with grants from the Fund for Astrophysical Research and the University Research Council.

Suppression of fiber modal noise induced radial velocity errors for bright emission-line calibration sources

DOE Office of Scientific and Technical Information (OSTI.GOV)

Mahadevan, Suvrath; Halverson, Samuel; Ramsey, Lawrence

2014-05-01

Modal noise in optical fibers imposes limits on the signal-to-noise ratio (S/N) and velocity precision achievable with the next generation of astronomical spectrographs. This is an increasingly pressing problem for precision radial velocity spectrographs in the near-infrared (NIR) and optical that require both high stability of the observed line profiles and high S/N. Many of these spectrographs plan to use highly coherent emission-line calibration sources like laser frequency combs and Fabry-Perot etalons to achieve precision sufficient to detect terrestrial-mass planets. These high-precision calibration sources often use single-mode fibers or highly coherent sources. Coupling light from single-mode fibers to multi-mode fibersmore » leads to only a very low number of modes being excited, thereby exacerbating the modal noise measured by the spectrograph. We present a commercial off-the-shelf solution that significantly mitigates modal noise at all optical and NIR wavelengths, and which can be applied to spectrograph calibration systems. Our solution uses an integrating sphere in conjunction with a diffuser that is moved rapidly using electrostrictive polymers, and is generally superior to most tested forms of mechanical fiber agitation. We demonstrate a high level of modal noise reduction with a narrow bandwidth 1550 nm laser. Our relatively inexpensive solution immediately enables spectrographs to take advantage of the innate precision of bright state-of-the art calibration sources by removing a major source of systematic noise.« less

Enhanced Exoplanet Biosignature from an Interferometer Addition to Low Resolution Spectrographs

NASA Astrophysics Data System (ADS)

Erskine, D. J.; Muirhead, P. S.; Vanderburg, A. M.; Szentgyorgyi, A.

2017-12-01

The absorption spectral signature of many atmospheric molecules consists of a group of 40 or so lines that are approximately periodic due to the physics of molecular vibration. This is fortuitous for detecting atmospheric features in an exoEarth, since it has a similar periodic nature as an interferometer's transmission, which is sinusoidal. The period (in wavenumbers) of the interferometer is selectable, being inversely proportional to the delay (in cm). We show that the addition of a small interferometer of 0.6 cm delay to an existing dispersive spectrograph can greatly enhance the detection of molecular features, by several orders of magnitude for initially low resolution spectrographs. We simulate the Gemini Planet Imager measuring a telluric spectrum having native resolution of 40 and 70 in the 1.65 micron and 2 micron bands. These low resolutions are insufficient to resolve the fine features of the molecular feature group. However, the addition of a 0.6 cm delay outside the spectrograph and in series with it increases the local amplitude of the signal to a level similar to a R=4400 (at 1.65 micron) or R=3900 (at 2 micron) classical spectrograph. Prepared by LLNL under Contract DE-AC52-07NA27344.

Hectospec, the MMT's 300 Optical Fiber-Fed Spectrograph

NASA Astrophysics Data System (ADS)

Fabricant, Daniel; Fata, Robert; Roll, John; Hertz, Edward; Caldwell, Nelson; Gauron, Thomas; Geary, John; McLeod, Brian; Szentgyorgyi, Andrew; Zajac, Joseph; Kurtz, Michael; Barberis, Jack; Bergner, Henry; Brown, Warren; Conroy, Maureen; Eng, Roger; Geller, Margaret; Goddard, Richard; Honsa, Michael; Mueller, Mark; Mink, Douglas; Ordway, Mark; Tokarz, Susan; Woods, Deborah; Wyatt, William; Epps, Harland; Dell'Antonio, Ian

2005-12-01

The Hectospec is a 300 optical fiber fed spectrograph commissioned at the MMT in the spring of 2004. In the configuration pioneered by the Autofib instrument at the Anglo-Australian Telescope, Hectospec's fiber probes are arranged in a radial ``fisherman on the pond'' geometry and held in position with small magnets. A pair of high-speed, six-axis robots move the 300 fiber buttons between observing configurations within ~300 s, and to an accuracy of ~25 μm. The optical fibers run for 26 m between the MMT's focal surface and the bench spectrograph, operating at R~1000-2000. Hectochelle, another high-dispersion bench spectrograph offering R~35,000, is also available. The system throughput, including all losses in the telescope optics, fibers, and spectrograph, peaks at ~10% at the grating blaze in 1" FWHM seeing. Correcting for aperture losses at the 1.5" diameter fiber entrance aperture, the system throughput peaks at ~17%, close to our prediction of 20%. Hectospec has proven to be a workhorse instrument at the MMT. Together, Hectospec and Hectochelle have been scheduled for 1/3 of the available nights since its commissioning. Hectospec has returned approximately 60,000 reduced spectra for 16 scientific programs during its first year of operation.

Toroidal varied-line space (TVLS) gratings

NASA Astrophysics Data System (ADS)

Thomas, Roger J.

2003-02-01

It is a particular challenge to develop a stigmatic spectrograph for EUV wavelengths since the very low normal-incidence reflectance of standard materials most often requires that the design be restricted to a single optical element which must simultaneously provide both re-imaging and spectral dispersion. This problem has been solved in the past by the use of toroidal gratings with uniform line-space rulings (TULS). A number of solar EUV spectrographs have been based on such designs, including SOHO/CDS, Solar-B/EIS, and the sounding rockets SERTS and EUNIS. More recently, Kita, Harada, and collaborators have developed the theory of spherical gratings with varied line-space rulings (SVLS) operated at unity magnification, which have been flown on several astronomical satellite missions. These ideas are now combined into a spectrograph concept that considers varied-line space grooves ruled onto toroidal gratings. Such TVLS designs are found to provide excellent imaging even at very large spectrograph magnifications and beam-speeds, permitting extremely high-quality performance in remarkably compact instrument packages. Optical characteristics of two solar spectrographs based on this concept are described: SUMI, proposed as a sounding rocket experiment, and NEXUS, proposed for the Solar Dynamics Observatory mission.

VizieR Online Data Catalog: weak G-band stars abundances (Palacios+, 2016)

NASA Astrophysics Data System (ADS)

Palacios, A.; Jasniewicz, G.; Masseron, T.; Thevenin, F.; Itam-Pasquet, J.; Parthasarathy, M.

2016-05-01

Seventeen southern wGb stars were observed at La Silla, ESO Chile, with the high-efficiency Fiber-fed Extended Range Optical Spectrograph FEROS spectrograph mounted on the 2.2m telescope. FEROS is a bench-mounted, thermally controlled, prism-cross-dispersed echelle spectrograph, providing, in a single spectrogram spread over 39 orders, almost complete spectral coverage from ~350 to ~920nm at a resolution of 48000. The FEROS observations were carried out during an observing run between May 10 and 13, 2012. All these spectra were flat-fielded and calibrated by means of ThArNe exposures using standard processing tools available at ESO. In addition, two northern wGb stars, HD 18474 and HD 166208, were observed in service mode at the Observatoire du Pic du Midi, France, with the NARVAL spectrograph mounted on the Bernard Lyot 2.0m telescope. The NARVAL instrument consists of a bench-mounted cross-dispersed echelle spectrograph, fibre-fed from a Cassegrain-mounted polarimeter unit. It was used in its non-polarimetric mode; it provided almost complete spectral coverage from ~375 to ~1050nm at a resolution of 75000 in a single spectrogram spread over 40 orders. (6 data files).

Characterization of a prototype strain of hepatitis E virus.

PubMed

Tsarev, S A; Emerson, S U; Reyes, G R; Tsareva, T S; Legters, L J; Malik, I A; Iqbal, M; Purcell, R H

1992-01-15

A strain of hepatitis E virus (SAR-55) implicated in an epidemic of enterically transmitted non-A, non-B hepatitis, now called hepatitis E, was characterized extensively. Six cynomolgus monkeys (Macaca fascicularis) were infected with a strain of hepatitis E virus from Pakistan. Reverse transcription-polymerase chain reaction was used to determine the pattern of virus shedding in feces, bile, and serum relative to hepatitis and induction of specific antibodies. Virtually the entire genome of SAR-55 (7195 nucleotides) was sequenced. Comparison of the sequence of SAR-55 with that of a Burmese strain revealed a high level of homology except for one region encoding 100 amino acids of a putative nonstructural polyprotein. Identification of this region as hypervariable was obtained by partial sequencing of a third isolate of hepatitis E virus from Kirgizia.

System selects framing rate for spectrograph camera

NASA Technical Reports Server (NTRS)

1965-01-01

Circuit using zero-order light is reflected to a photomultiplier in the incoming radiation of a spectrograph monitor to provide an error signal which controls the advancing and driving rate of the film through the camera.

MEGARA: the new multi-object and integral field spectrograph for GTC

NASA Astrophysics Data System (ADS)

Carrasco, E.; Páez, G.; Izazaga-Pére, R.; Gil de Paz, A.; Gallego, J.; Iglesias-Páramo, J.

2017-07-01

MEGARA is an optical integral-field unit and multi-object spectrograph for the 10.4m Gran Telescopio Canarias. Both observational modes will provide identical spectral resolutions Rfwhm ˜ 6,000, 12,000 and 18,700. The spectrograph is a collimator-camera system. The unique characteristics of MEGARA in terms of throughput and versatility make this instrument the most efficient tool to date to analyze astrophysical objects at intermediate spectral resolutions. The instrument is currently at the telescope for on-sky commissioning. Here we describe the as-built main characteristics the instrument.

Using a new, free spectrograph program to critically investigate acoustics

NASA Astrophysics Data System (ADS)

Ball, Edward; Ruiz, Michael J.

2016-11-01

We have developed an online spectrograph program with a bank of over 30 audio clips to visualise a variety of sounds. Our audio library includes everyday sounds such as speech, singing, musical instruments, birds, a baby, cat, dog, sirens, a jet, thunder, and screaming. We provide a link to a video of the sound sources superimposed with their respective spectrograms in real time. Readers can use our spectrograph program to view our library, open their own desktop audio files, and use the program in real time with a computer microphone.

HIV envelope glycoprotein imaged at high resolution | Center for Cancer Research

Cancer.gov

The outer surface of the human immunodeficiency virus (HIV) is surrounded by an envelope studded with spike-shaped glycoproteins called Env that help the deadly virus identify, bind, and infect cells. When unbound, Env exists in a “closed” conformational state. Upon binding with target cells, such as CD4+ T cells, the protein transitions to an “open” configuration. Given that

The impact of countermeasure propagation on the prevalence of computer viruses.

PubMed

Chen, Li-Chiou; Carley, Kathleen M

2004-04-01

Countermeasures such as software patches or warnings can be effective in helping organizations avert virus infection problems. However, current strategies for disseminating such countermeasures have limited their effectiveness. We propose a new approach, called the Countermeasure Competing (CMC) strategy, and use computer simulation to formally compare its relative effectiveness with three antivirus strategies currently under consideration. CMC is based on the idea that computer viruses and countermeasures spread through two separate but interlinked complex networks-the virus-spreading network and the countermeasure-propagation network, in which a countermeasure acts as a competing species against the computer virus. Our results show that CMC is more effective than other strategies based on the empirical virus data. The proposed CMC reduces the size of virus infection significantly when the countermeasure-propagation network has properties that favor countermeasures over viruses, or when the countermeasure-propagation rate is higher than the virus-spreading rate. In addition, our work reveals that CMC can be flexibly adapted to different uncertainties in the real world, enabling it to be tuned to a greater variety of situations than other strategies.

Host adaptation and transmission of influenza A viruses in mammals

PubMed Central

Schrauwen, Eefje JA; Fouchier, Ron AM

2014-01-01

A wide range of influenza A viruses of pigs and birds have infected humans in the last decade, sometimes with severe clinical consequences. Each of these so-called zoonotic infections provides an opportunity for virus adaptation to the new host. Fortunately, most of these human infections do not yield viruses with the ability of sustained human-to-human transmission. However, animal influenza viruses have acquired the ability of sustained transmission between humans to cause pandemics on rare occasions in the past, and therefore, influenza virus zoonoses continue to represent threats to public health. Numerous recent studies have shed new light on the mechanisms of adaptation and transmission of avian and swine influenza A viruses in mammals. In particular, several studies provided insights into the genetic and phenotypic traits of influenza A viruses that may determine airborne transmission. Here, we summarize recent studies on molecular determinants of virulence and adaptation of animal influenza A virus and discuss the phenotypic traits associated with airborne transmission of newly emerging influenza A viruses. Increased understanding of the determinants and mechanisms of virulence and transmission may aid in assessing the risks posed by animal influenza viruses to human health, and preparedness for such risks. PMID:26038511

Evolutionary dynamics of giant viruses and their virophages.

PubMed

Wodarz, Dominik

2013-07-01

Giant viruses contain large genomes, encode many proteins atypical for viruses, replicate in large viral factories, and tend to infect protists. The giant virus replication factories can in turn be infected by so called virophages, which are smaller viruses that negatively impact giant virus replication. An example is Mimiviruses that infect the protist Acanthamoeba and that are themselves infected by the virophage Sputnik. This study examines the evolutionary dynamics of this system, using mathematical models. While the models suggest that the virophage population will evolve to increasing degrees of giant virus inhibition, it further suggests that this renders the virophage population prone to extinction due to dynamic instabilities over wide parameter ranges. Implications and conditions required to avoid extinction are discussed. Another interesting result is that virophage presence can fundamentally alter the evolutionary course of the giant virus. While the giant virus is predicted to evolve toward increasing its basic reproductive ratio in the absence of the virophage, the opposite is true in its presence. Therefore, virophages can not only benefit the host population directly by inhibiting the giant viruses but also indirectly by causing giant viruses to evolve toward weaker phenotypes. Experimental tests for this model are suggested.

Evolutionary dynamics of giant viruses and their virophages

PubMed Central

Wodarz, Dominik

2013-01-01

Giant viruses contain large genomes, encode many proteins atypical for viruses, replicate in large viral factories, and tend to infect protists. The giant virus replication factories can in turn be infected by so called virophages, which are smaller viruses that negatively impact giant virus replication. An example is Mimiviruses that infect the protist Acanthamoeba and that are themselves infected by the virophage Sputnik. This study examines the evolutionary dynamics of this system, using mathematical models. While the models suggest that the virophage population will evolve to increasing degrees of giant virus inhibition, it further suggests that this renders the virophage population prone to extinction due to dynamic instabilities over wide parameter ranges. Implications and conditions required to avoid extinction are discussed. Another interesting result is that virophage presence can fundamentally alter the evolutionary course of the giant virus. While the giant virus is predicted to evolve toward increasing its basic reproductive ratio in the absence of the virophage, the opposite is true in its presence. Therefore, virophages can not only benefit the host population directly by inhibiting the giant viruses but also indirectly by causing giant viruses to evolve toward weaker phenotypes. Experimental tests for this model are suggested. PMID:23919155

Human Immunodeficiency Virus Playing Hide-and-Seek: Understanding the TFH Cell Reservoir and Proposing Strategies to Overcome the Follicle Sanctuary.

PubMed

Leong, Yew Ann; Atnerkar, Anurag; Yu, Di

2017-01-01

Human immunodeficiency virus (HIV) infects millions of people worldwide, and new cases continue to emerge. Once infected, the virus cannot be cleared by the immune system and causes acquired immunodeficiency syndrome. Combination antiretroviral therapeutic regimen effectively suppresses viral replication and halts disease progression. The treatment, however, does not eliminate the virus-infected cells, and interruption of treatment inevitably leads to viral rebound. The rebound virus originates from a group of virus-infected cells referred to as the cellular reservoir of HIV. Identifying and eliminating the HIV reservoir will prevent viral rebound and cure HIV infection. In this review, we focus on a recently discovered HIV reservoir in a subset of CD4 + T cells called the follicular helper T (T FH ) cells. We describe the potential mechanisms for the emergence of reservoir in T FH cells, and the strategies to target and eliminate this viral reservoir.

Artist Concept of MAVEN Imaging Ultraviolet Spectrograph at Work

NASA Image and Video Library

2014-11-07

This artist concept depicts the Imaging Ultraviolet Spectrograph IUVS on NASA MAVEN spacecraft scanning the upper atmosphere of Mars. IUVS uses limb scans to map the chemical makeup and vertical structure across Mars upper atmosphere.

Vacuum Predisperser For A Large Plane-Grating Spectrograph

NASA Astrophysics Data System (ADS)

Engleman, R.; Palmer, B. A.; Steinhaus, D. W.

1980-11-01

A plane grating predisperser has been constructed which acts as an "order-sorter" for a large plane-grating spectrograph. This combination can photograph relatively wide regions of spectra in a single exposure with no loss of resolution.

The micro-mirror technology applied to astronomy: ANIS adaptive-slit near Infrared spectrograph

NASA Astrophysics Data System (ADS)

Burgarella, Denis; Buat, Veronique; Bely, Pierre; Grange, Robert

2018-04-01

This paper, "The micro-mirror technology applied to astronomy: ANIS adaptive-slit near Infrared spectrograph," was presented as part of International Conference on Space Optics—ICSO 1997, held in Toulouse, France.

Design, development, and performance of the fibres of MOONS

NASA Astrophysics Data System (ADS)

Guinouard, Isabelle; Avila, Gerardo; Lee, David; Amans, Jean-Philippe; Rees, Phil; Taylor, William; Oliva, Ernesto

2016-07-01

The Multi-Object Optical and Near-infrared Spectrograph (MOONS) will exploit the full 500 square arcmin field of view offered by the Nasmyth focus of the Very Large Telescope and will be equipped with two identical triple arm cryogenic spectrographs covering the wavelength range 0.64μm-1.8μm, with a multiplex capability of over 1000 fibres. Each spectrograph will produce spectra for 500 targets simultaneously, each with its own dedicated sky fibre for optimal sky subtraction. The system will have both a medium resolution (R 4000-6000) mode and a high resolution (R 20000) mode. The fibres are used to pick off each sub field of 1" and are used to transport the light from the instrument focal plane to the two spectrographs. Each fibre has a microlens to focus the beam into the fibre at a relative fast focal ratio of F/3.65 to reduce the Focal Ratio Degradation (FRD).

Progreso en la puesta en marcha del espectrógrafo BHROS

NASA Astrophysics Data System (ADS)

Díaz, R.; Levato, H.; Casagrande, A.; Piroddi, D.; Yornet, G.; Eikenberry, S.; Gonzalez, F.; Townsend, A.; Godoy, J.; Marun, A.; Gunella, F.; D'Ambra, A.; Warner, C.; Bosch, G.; Donoso, V.; Grosso, M.; Seifer, E.

2017-10-01

We report the advance on the re-assembly and commissioning of the BHROS spectrograph, its associated instrument laboratory and the planned system of telescopes. This is the largest astronomical spectrograph ever assembled in Argentina and the laboratory is also being used for other instrumentation needs of ICATE. We have installed a half meter telescope in order to test the spectrograph with on-sky sources, and we plan to install a network of telescopes feeding it via a multiple optical fiber system. In these first tests we have obtained spectra of the Sun (R100000) and Jupiter and Achernar (R40000). In 2017-2018 we plan to install and test a network of five small telescopes feeding the spectrograph with the collecting area equivalent to that of a one meter telescope, with a cost 10-25 times less in acquisition, transport, installation and operation respect to a conventional monolithic telescope.

The Diffuse Interstellar Cloud Experiment: a high-resolution far-ultraviolet spectrograph.

PubMed

Schindhelm, Eric; Beasley, Matthew; Burgh, Eric B; Green, James C

2012-03-01

We have designed, assembled, and launched a sounding rocket payload to perform high-resolution far-ultraviolet spectroscopy. The instrument is functionally a Cassegrain telescope followed by a modified Rowland spectrograph. The spectrograph was designed to achieve a resolving power (R=λ/δλ) of 60,000 in a compact package by adding a magnifying secondary optic. This is enabled by using a holographically ruled grating to minimize aberrations induced by the second optic. We designed the instrument to observe two stars on opposing sides of a nearby hot/cold gas interface. Obtaining spectra of the O VI doublet in absorption toward these stars can provide new insight into the processes governing hot gas in the local interstellar medium. Here we present the optical design and alignment of the telescope and spectrograph, as well as flight results. © 2012 Optical Society of America

Immersion echelle spectrograph

DOEpatents

Stevens, Charles G.; Thomas, Norman L.

2000-01-01

A small spectrograph containing no moving components and capable of providing high resolution spectra of the mid-infrared region from 2 microns to 4 microns in wavelength. The resolving power of the spectrograph exceeds 20,000 throughout this region and at an optical throughput of about 10.sup.-5 cm.sup.2 sr. The spectrograph incorporates a silicon immersion echelle grating operating in high spectral order combined with a first order transmission grating in a cross-dispersing configuration to provide a two-dimensional (2-D) spectral format that is focused onto a two-dimensional infrared detector array. The spectrometer incorporates a common collimating and condensing lens assembly in a near aberration-free axially symmetric design. The spectrometer has wide use potential in addition to general research, such as monitoring atmospheric constituents for air quality, climate change, global warming, as well as monitoring exhaust fumes for smog sources or exhaust plumes for evidence of illicit drug manufacture.

Performance of a laser frequency comb calibration system with a high-resolution solar echelle spectrograph

NASA Astrophysics Data System (ADS)

Doerr, H.-P.; Kentischer, T. J.; Steinmetz, T.; Probst, R. A.; Franz, M.; Holzwarth, R.; Udem, Th.; Hänsch, T. W.; Schmidt, W.

2012-09-01

Laser frequency combs (LFC) provide a direct link between the radio frequency (RF) and the optical frequency regime. The comb-like spectrum of an LFC is formed by exact equidistant laser modes, whose absolute optical frequencies are controlled by RF-references such as atomic clocks or GPS receivers. While nowadays LFCs are routinely used in metrological and spectroscopic fields, their application in astronomy was delayed until recently when systems became available with a mode spacing and wavelength coverage suitable for calibration of astronomical spectrographs. We developed a LFC based calibration system for the high-resolution echelle spectrograph at the German Vacuum Tower Telescope (VTT), located at the Teide observatory, Tenerife, Canary Islands. To characterize the calibration performance of the instrument, we use an all-fiber setup where sunlight and calibration light are fed to the spectrograph by the same single-mode fiber, eliminating systematic effects related to variable grating illumination.

Instruments at the Lowell Observatory Discovery Channel Telescope (DCT)

NASA Astrophysics Data System (ADS)

Jacoby, George H.; Bida, Thomas A.; Fischer, Debra; Horch, Elliott; Kutyrev, Alexander; Mace, Gregory N.; Massey, Philip; Roe, Henry G.; Prato, Lisa A.

2017-01-01

The Lowell Observatory Discovery Channel Telescope (DCT) has been in full science operation for 2 years (2015 and 2016). Five instruments have been commissioned during that period, and two additional instruments are planned for 2017. These include:+ Large Monolithic Imager (LMI) - a CCD imager (12.6 arcmin FoV)+ DeVeny - a general purpose optical spectrograph (2 arcmin slit length, 10 grating choices)+ NIHTS - a low resolution (R=160) YJHK spectrograph (1.3 arcmin slit)+ DSSI - a two-channel optical speckle imager (5 arcsec FoV)+ IGRINS - a high resolution (45,000) HK spectrograph, on loan from the University of Texas.In the upcoming year, instruments will be delivered from the University of Maryland (RIMAS - a YJHK imager/spectrograph) and from Yale University (EXPRES - a very high resolution stabilized optical echelle for PRV).Each of these instruments will be described, along with their primary science goals.

Nectin-like interactions between poliovirus and its receptor trigger conformational changes associated with cell entry.

PubMed

Strauss, Mike; Filman, David J; Belnap, David M; Cheng, Naiqian; Noel, Roane T; Hogle, James M

2015-04-01

Poliovirus infection is initiated by attachment to a receptor on the cell surface called Pvr or CD155. At physiological temperatures, the receptor catalyzes an irreversible expansion of the virus to form an expanded form of the capsid called the 135S particle. This expansion results in the externalization of the myristoylated capsid protein VP4 and the N-terminal extension of the capsid protein VP1, both of which become inserted into the cell membrane. Structures of the expanded forms of poliovirus and of several related viruses have recently been reported. However, until now, it has been unclear how receptor binding triggers viral expansion at physiological temperature. Here, we report poliovirus in complex with an enzymatically partially deglycosylated form of the 3-domain ectodomain of Pvr at a 4-Å resolution, as determined by cryo-electron microscopy. The interaction of the receptor with the virus in this structure is reminiscent of the interactions of Pvr with its natural ligands. At a low temperature, the receptor induces very few changes in the structure of the virus, with the largest changes occurring within the footprint of the receptor, and in a loop of the internal protein VP4. Changes in the vicinity of the receptor include the displacement of a natural lipid ligand (called "pocket factor"), demonstrating that the loss of this ligand, alone, is not sufficient to induce particle expansion. Finally, analogies with naturally occurring ligand binding in the nectin family suggest which specific structural rearrangements in the virus-receptor complex could help to trigger the irreversible expansion of the capsid. The cell-surface receptor (Pvr) catalyzes a large structural change in the virus that exposes membrane-binding protein chains. We fitted known atomic models of the virus and Pvr into three-dimensional experimental maps of the receptor-virus complex. The molecular interactions we see between poliovirus and its receptor are reminiscent of the nectin family, by involving the burying of otherwise-exposed hydrophobic groups. Importantly, poliovirus expansion is regulated by the binding of a lipid molecule within the viral capsid. We show that receptor binding either causes this molecule to be expelled or requires it, but that its loss is not sufficient to trigger irreversible expansion. Based on our model, we propose testable hypotheses to explain how the viral shell becomes destabilized, leading to RNA uncoating. These findings give us a better understanding of how poliovirus has evolved to exploit a natural process of its host to penetrate the membrane barrier. Copyright © 2015, American Society for Microbiology. All Rights Reserved.

Nectin-Like Interactions between Poliovirus and Its Receptor Trigger Conformational Changes Associated with Cell Entry

PubMed Central

Strauss, Mike; Filman, David J.; Belnap, David M.; Cheng, Naiqian; Noel, Roane T.

2015-01-01

ABSTRACT Poliovirus infection is initiated by attachment to a receptor on the cell surface called Pvr or CD155. At physiological temperatures, the receptor catalyzes an irreversible expansion of the virus to form an expanded form of the capsid called the 135S particle. This expansion results in the externalization of the myristoylated capsid protein VP4 and the N-terminal extension of the capsid protein VP1, both of which become inserted into the cell membrane. Structures of the expanded forms of poliovirus and of several related viruses have recently been reported. However, until now, it has been unclear how receptor binding triggers viral expansion at physiological temperature. Here, we report poliovirus in complex with an enzymatically partially deglycosylated form of the 3-domain ectodomain of Pvr at a 4-Å resolution, as determined by cryo-electron microscopy. The interaction of the receptor with the virus in this structure is reminiscent of the interactions of Pvr with its natural ligands. At a low temperature, the receptor induces very few changes in the structure of the virus, with the largest changes occurring within the footprint of the receptor, and in a loop of the internal protein VP4. Changes in the vicinity of the receptor include the displacement of a natural lipid ligand (called “pocket factor”), demonstrating that the loss of this ligand, alone, is not sufficient to induce particle expansion. Finally, analogies with naturally occurring ligand binding in the nectin family suggest which specific structural rearrangements in the virus-receptor complex could help to trigger the irreversible expansion of the capsid. IMPORTANCE The cell-surface receptor (Pvr) catalyzes a large structural change in the virus that exposes membrane-binding protein chains. We fitted known atomic models of the virus and Pvr into three-dimensional experimental maps of the receptor-virus complex. The molecular interactions we see between poliovirus and its receptor are reminiscent of the nectin family, by involving the burying of otherwise-exposed hydrophobic groups. Importantly, poliovirus expansion is regulated by the binding of a lipid molecule within the viral capsid. We show that receptor binding either causes this molecule to be expelled or requires it, but that its loss is not sufficient to trigger irreversible expansion. Based on our model, we propose testable hypotheses to explain how the viral shell becomes destabilized, leading to RNA uncoating. These findings give us a better understanding of how poliovirus has evolved to exploit a natural process of its host to penetrate the membrane barrier. PMID:25631086

Design and early performance of IGRINS (Immersion Grating Infrared Spectrometer)

NASA Astrophysics Data System (ADS)

Park, Chan; Jaffe, Daniel T.; Yuk, In-Soo; Chun, Moo-Young; Pak, Soojong; Kim, Kang-Min; Pavel, Michael; Lee, Hanshin; Oh, Heeyoung; Jeong, Ueejeong; Sim, Chae Kyung; Lee, Hye-In; Nguyen Le, Huynh Anh; Strubhar, Joseph; Gully-Santiago, Michael; Oh, Jae Sok; Cha, Sang-Mok; Moon, Bongkon; Park, Kwijong; Brooks, Cynthia; Ko, Kyeongyeon; Han, Jeong-Yeol; Nah, Jakyoung; Hill, Peter C.; Lee, Sungho; Barnes, Stuart; Yu, Young Sam; Kaplan, Kyle; Mace, Gregory; Kim, Hwihyun; Lee, Jae-Joon; Hwang, Narae; Park, Byeong-Gon

2014-07-01

The Immersion Grating Infrared Spectrometer (IGRINS) is a compact high-resolution near-infrared cross-dispersed spectrograph whose primary disperser is a silicon immersion grating. IGRINS covers the entire portion of the wavelength range between 1.45 and 2.45μm that is accessible from the ground and does so in a single exposure with a resolving power of 40,000. Individual volume phase holographic (VPH) gratings serve as cross-dispersing elements for separate spectrograph arms covering the H and K bands. On the 2.7m Harlan J. Smith telescope at the McDonald Observatory, the slit size is 1ʺ x 15ʺ and the plate scale is 0.27ʺ pixel. The spectrograph employs two 2048 x 2048 pixel Teledyne Scientific and Imaging HAWAII-2RG detectors with SIDECAR ASIC cryogenic controllers. The instrument includes four subsystems; a calibration unit, an input relay optics module, a slit-viewing camera, and nearly identical H and K spectrograph modules. The use of a silicon immersion grating and a compact white pupil design allows the spectrograph collimated beam size to be only 25mm, which permits a moderately sized (0.96m x 0.6m x 0.38m) rectangular cryostat to contain the entire spectrograph. The fabrication and assembly of the optical and mechanical components were completed in 2013. We describe the major design characteristics of the instrument including the system requirements and the technical strategy to meet them. We also present early performance test results obtained from the commissioning runs at the McDonald Observatory.

MEGARA spectrograph optics

NASA Astrophysics Data System (ADS)

Carrasco, E.; Sánchez-Blanco, E.; García-Vargas, M. L.; Gil de Paz, A.; Páez, G.; Gallego, J.; Sánchez, F. M.; Vílchez, J. M.

2012-09-01

MEGARA is the next optical Integral-Field Unit (IFU) and Multi-Object Spectrograph (MOS) for Gran Telescopio Canarias. The instrument offers two IFUs plus a Multi-Object Spectroscopy (MOS) mode: a large compact bundle covering 12.5 arcsec x 11.3 arcsec on sky with 100 μm fiber-core; a small compact bundle, of 8.5 arcsec x 6.7 arcsec with 70 μm fiber-core and a fiber MOS positioner that allows to place up to 100 mini-bundles, 7 fibers each, with 100 μm fiber-core, within a 3.5 arcmin x 3.5 arcmin field of view, around the two IFUs. The fibers, organized in bundles, end in the pseudo-slit plate, which will be placed at the entrance focal plane of the MEGARA spectrograph. The large IFU and MOS modes will provide intermediate to high spectral resolutions, R=6800-17000. The small IFU mode will provide R=8000-20000. All these resolutions are possible thanks to a spectrograph design based in the used of volume phase holographic gratings in combination with prisms to keep fixed the collimator and camera angle. The MEGARA optics is composed by a total of 53 large optical elements per spectrograph: the field lens, the collimator and the camera lenses plus the complete set of pupil elements including holograms, windows and prisms. INAOE, a partner of the GTC and a partner of MEGARA consortium, is responsible of the optics manufacturing and tests. INAOE will carry out this project working in an alliance with CIO. This paper summarizes the status of MEGARA spectrograph optics at the Preliminary Design Review, held on March 2012.

Hubble Space Telescope, Faint Object Spectrograph

NASA Technical Reports Server (NTRS)

1981-01-01

This drawing illustrates the Hubble Space Telescope's (HST's), Faint Object Spectrograph (FOS). The HST's two spectrographs, the Goddard High-Resolution Spectrograph and the FOS, can detect a broader range of wavelengths than is possible from the Earth because there is no atmosphere to absorb certain wavelengths. Scientists can determine the chemical composition, temperature, pressure, and turbulence of the stellar atmosphere producing the light, all from spectral data. The FOC can detect detail in very faint objects, such as those at great distances, and light ranging from ultraviolet to red spectral bands. Both spectrographs operate in essentially the same way. The incoming light passes through a small entrance aperture, then passes through filters and diffraction gratings, that work like prisms. The filter or grating used determines what range of wavelength will be examined and in what detail. Then the spectrograph detectors record the strength of each wavelength band and sends it back to Earth. The purpose of the HST, the most complex and sensitive optical telescope ever made, is to study the cosmos from a low-Earth orbit. By placing the telescope in space, astronomers are able to collect data that is free of the Earth's atmosphere. The HST views galaxies, stars, planets, comets, possibly other solar systems, and even unusual phenomena such as quasars, with 10 times the clarity of ground-based telescopes. The HST was deployed from the Space Shuttle Discovery (STS-31 mission) into Earth orbit in April 1990. The Marshall Space Flight Center had responsibility for design, development, and construction of the HST. The Perkin-Elmer Corporation, in Danbury, Cornecticut, developed the optical system and guidance sensors.

The Magellan Project

NASA Astrophysics Data System (ADS)

Shectman, Stephen A.

1995-05-01

The Magellan project is a collaboration between the Carnegie Institution of Washington and the University of Arizona to build and operate a 6.5-meter telescope at the Las Campanas Observatory in Chile. Negotiations which are presently underway with additional partners are likely to result in the construction of a second identical telescope as part of the same facility. The concrete work for the first telescope has been completed. The steel structure for the fixed part of the dome and for the aluminizing building has been shipped to the site. The structure for the rotating part of the dome should arrive at the site by the end of 1995. The telescope mount is being constructed by L&F Industries of Huntington Park, CA. Most of the structure has been fabricated and machining of the parts is underway. Shop assembly of the mount is scheduled to be completed by the end of 1995, and the mount should arrive at the site by mid-1996. The borosilicate honeycomb mirror blank for the first telescope was cast at the Steward Observatory Mirror Lab in February, 1994. The refractory material is presently being cleaned out of the honeycomb cores, and figuring should begin in 1996. The schedule calls for the mirror to be installed in the telescope by mid-1997. The optical design of the telescope features an f/11 Gregorian secondary for which the field curvature is matched to the collimator optics of a wide-field imaging spectrograph. A two-element field corrector incorporates an atmospheric dispersion compensator with no additional glass-air surfaces. The matching field curvatures permit the collimator to cover a very wide field (30 arc-min) with high image quality (0.1 arc-sec rms). Cameras and detectors which make use of such a wide field are challenging but at least conceivable from a technical point of view. A compact echelle spectrograph has also been designed to work in the resolution range 30-50,000. Spectral coverage will be complete between 3500A and 8500A. The spectrograph has been designed for high throughput and the CCD readouts will be optimized in a novel way to minimize the effect of amplifier noise for observations of faint objects.

CARMENES: Commissioning and first scientific results at the telescope. A precursor for HIRES@E-ELT

NASA Astrophysics Data System (ADS)

Amado, P. J.; The Carmenes Consortium

2017-03-01

CARMENES is the next generation instrument built for the CAHA 3.5m telescope by a large international consortium of 11 institutes in Spain and Germany. It consists of two separate highly-stabilized, high-resolution echelle spectrographs covering both the visible, from 550 to 950 nm, and the near-IR, from 950 to 1700 nm, wavelength ranges with spectral resolution of R=82,000. They are fed by fibres from the Cassegrain focus of the telescope and were designed and built to achieve high-accuracy radial velocities of nearby M-dwarf stars. This contribution overviews the main and unique design characteristics of CARMENES. The instrument MAIV phase was achieved in the last two years (2014-2015) and started commissioning in November 2015. The commissioning phases, both technical and scientific, took six full weeks in the last two months of 2015. They have shown that the instrument is well within requirements and performing to be able to achieve its objective, not proven before in the near-infrared, of providing radial velocities precisions of 5 ms^{-1}, with a goal of 1 ms^{-1}. The Guaranteed Time Observations (GTO) program has started in January 1st, 2016. CARMENES is, therefore, currently conducting a radial-velocity survey of 300 M dwarfs with a precision sufficient for detecting Earth-like planets in their habitable zones. It is also being offered in open time by the CAHA. Its modular design is the idea in which HIRES, the next very high-resolution, high-fidelity spectrograph with wide wavelength coverage at the E-ELT, is based on. This E-ELT instrument might consist of four different high-resolution spectrographs covering the blue, the visible, the near-infrared (Y, J and H bands) and the K band. A proposal to the ESO call for Phase-A studies for a HIRES at the E-ELT was submitted by the HIRES consortium last December. This proposal was accepted by ESO and the Phase-A kick-off meeting between ESO and the consortium took place in March 22, 2016.

Novel RNA viruses within plant parasitic cyst nematodes

PubMed Central

Ruark, Casey L.; Gardner, Michael; Mitchum, Melissa G.; Davis, Eric L.

2018-01-01

The study of invertebrate–and particularly nematode–viruses is emerging with the advancement of transcriptome sequencing. Five single-stranded RNA viruses have now been confirmed within the economically important soybean cyst nematode (SCN; Heterodera glycines). From previous research, we know these viruses to be widespread in greenhouse and field populations of SCN. Several of the SCN viruses were also confirmed within clover (H. trifolii) and beet (H. schachtii) cyst nematodes. In the presented study, we sequenced the transcriptomes of several inbred SCN populations and identified two previously undiscovered viral-like genomes. Both of these proposed viruses are negative-sense RNA viruses and have been named SCN nyami-like virus (NLV) and SCN bunya-like virus (BLV). Finally, we analyzed publicly available transcriptome data of two potato cyst nematode (PCN) species, Globodera pallida and G. rostochiensis. From these data, a third potential virus was discovered and called PCN picorna-like virus (PLV). PCN PLV is a positive-sense RNA virus, and to the best of our knowledge, is the first virus described within PCN. The presence of these novel viruses was confirmed via qRT-PCR, endpoint PCR, and Sanger sequencing with the exception of PCN PLV due to quarantine restrictions on the nematode host. While much work needs to be done to understand the biological and evolutionary significance of these viruses, they offer insight into nematode ecology and the possibility of novel nematode management strategies. PMID:29509804

Novel RNA viruses within plant parasitic cyst nematodes.

PubMed

Ruark, Casey L; Gardner, Michael; Mitchum, Melissa G; Davis, Eric L; Sit, Tim L

2018-01-01

The study of invertebrate-and particularly nematode-viruses is emerging with the advancement of transcriptome sequencing. Five single-stranded RNA viruses have now been confirmed within the economically important soybean cyst nematode (SCN; Heterodera glycines). From previous research, we know these viruses to be widespread in greenhouse and field populations of SCN. Several of the SCN viruses were also confirmed within clover (H. trifolii) and beet (H. schachtii) cyst nematodes. In the presented study, we sequenced the transcriptomes of several inbred SCN populations and identified two previously undiscovered viral-like genomes. Both of these proposed viruses are negative-sense RNA viruses and have been named SCN nyami-like virus (NLV) and SCN bunya-like virus (BLV). Finally, we analyzed publicly available transcriptome data of two potato cyst nematode (PCN) species, Globodera pallida and G. rostochiensis. From these data, a third potential virus was discovered and called PCN picorna-like virus (PLV). PCN PLV is a positive-sense RNA virus, and to the best of our knowledge, is the first virus described within PCN. The presence of these novel viruses was confirmed via qRT-PCR, endpoint PCR, and Sanger sequencing with the exception of PCN PLV due to quarantine restrictions on the nematode host. While much work needs to be done to understand the biological and evolutionary significance of these viruses, they offer insight into nematode ecology and the possibility of novel nematode management strategies.

Influenza (Flu)

MedlinePlus

Influenza (flu) Overview Influenza is a viral infection that attacks your respiratory system — your nose, throat and lungs. Influenza, commonly called the flu, is not the same as stomach "flu" viruses ...

Dalbavancin Injection

MedlinePlus

... treat skin infections caused by certain types of bacteria. Dalbavancin is in a class of medications called lipoglycopeptide antibiotics. It works by killing bacteria.Antibiotics such as dalbavancin will not kill viruses ...

VIRUS-P Integral Field Spectroscopy of NGC 3310

NASA Astrophysics Data System (ADS)

Powell, Kathryn E.; Dufour, R. J.; Kwitter, K. B.; Robertson, P.

2012-05-01

We present the results of spectrophotometric mapping of the SAB(r)bc galaxy NGC 3310 using the VIRUS-P integral field spectrograph on the 2.7m Harlan Smith Telescope at McDonald Observatory (Hill et al. 2008 Proc. SPIE, 7014, 701470). VIRUS-P has an IFU consisting of 246 fibers arranged in an array covering a 2.82 arcmin square FOV with each fiber covering a 4.16 arcsec diameter region. The fibers have a 1/3 filling factor so the observations were dithered with alternating object-sky integrations. The FOV essentially covered the entire visible disk of NGC 3310, enabling a spatial study of the H II regions and stellar properties. Two grating tilts were used, resulting in spectra covering 3400-5600 A and 4600-6800 A with 5 A resolution. The spectra were combined, sky subtracted, and calibrated using the photometric standard star HZ44. We produced an integrated spectrum of the galaxy, which we compare with that from a study of NGC 628 with a similar instrument by Sanchez et al. (2011 MNRAS, 410, 313). We also present an analysis of radial variations in diagnostic emission line ratios of the H II regions such as [O III]5007/Hbeta (excitation), [N II]6583/Halpha, [S II]6717/6730 (electron density), and Halpha/Hbeta (reddening) among others. Since VIRUS-P obtained spectra of the stellar population adjacent to the H II regions, we can partially subtract the underlying stellar continua Balmer line absorption to improve the true Halpha/Hbeta ratio in the nebulae that is useful for mapping the radial variation in reddening and dust content. We also analyzed the radial variation in various emission lines in the H II regions to assess abundance gradients. This research is supported in part by a Rice University undergraduate research grant to K. Powell. We also express gratitude to McDonald Observatory, University of Texas at Austin, for a generous allotment of observing time.

[Hantavirus infection as the cause of haemorrhagic fever with renal syndrome].

PubMed

Redal-Baigorri, Belén; Chen Nielsen, Xiaohui; Martin-Iguacel, Raquel

2012-10-29

Hantavirus is an RNA virus that can cause potentially fatal pulmonary and renal diseases in humans. Infections with Hantaviruses occur through inhalation of aerosol from rodent faeces, urine or saliva. The predominant virus type in Denmark is the Puumala virus, which causes the mildest form of haemorrhagic fever with renal syndrome, the so-called nephropathia epidemica (NE) with good prognosis (mortality 0.1-0.4%). The incidence of Hantavirus-infection in Denmark is about ten cases a year. The diagnosis of Hantavirus-infection is based on serology and/or polymerase chain reaction in blood or urine.

Dynamical roguing model for controlling the spread of tungro virus via Nephotettix Virescens in a rice field

NASA Astrophysics Data System (ADS)

Blas, Nikki; David, Guido

2017-10-01

Rice tungro disease is described as a cancer due to its major impact on the livelihood of farmers and the difficulty of controlling it. Tungro is a semi-persistent virus transmitted by green leafhoppers called Nephotettix Virescens. In this paper, we presented a compartmental plant-vector model of the Nephotettix Virescens - rice plant interaction based on a system of ordinary differential equations to simulate the effects of roguing in controlling the spread of Tungro virus in a model rice field of susceptible rice variety (Taichung Native 1).

The influence of motion and stress on optical fibers

NASA Astrophysics Data System (ADS)

Murphy, Jeremy D.; Hill, Gary J.; MacQueen, Phillip J.; Taylor, Trey; Soukup, Ian; Moreira, Walter; Cornell, Mark E.; Good, John; Anderson, Seth; Fuller, Lindsay; Lee, Hanshin; Kelz, Andreas; Rafal, Marc; Rafferty, Tom; Tuttle, Sarah; Vattiat, Brian

2012-09-01

We report on extensive testing carried out on the optical fibers for the VIRUS instrument. The primary result of this work explores how 10+ years of simulated wear on a VIRUS fiber bundle affects both transmission and focal ratio degradation (FRD) of the optical fibers. During the accelerated lifetime tests we continuously monitored the fibers for signs of FRD. We find that transient FRD events were common during the portions of the tests when motion was at telescope slew rates, but dropped to negligible levels during rates of motion typical for science observation. Tests of fiber transmission and FRD conducted both before and after the lifetime tests reveal that while transmission values do not change over the 10+ years of simulated wear, a clear increase in FRD is seen in all 18 fibers tested. This increase in FRD is likely due to microfractures that develop over time from repeated flexure of the fiber bundle, and stands in contrast to the transient FRD events that stem from localized stress and subsequent modal diffusion of light within the fibers. There was no measurable wavelength dependence on the increase in FRD over 350 nm to 600 nm. We also report on bend radius tests conducted on individual fibers and find the 266 μm VIRUS fibers to be immune to bending-induced FRD at bend radii of R 10 cm. Below this bend radius FRD increases slightly with decreasing radius. Lastly, we give details of a degradation seen in the fiber bundle currently deployed on the Mitchell Spectrograph (formally VIRUS-P) at McDonald Observatory. The degradation is shown to be caused by a localized shear in a select number of optical fibers that leads to an explosive form of FRD. In a few fibers, the overall transmission loss through the instrument can exceed 80%. These results are important for the VIRUS instrument, and for both current and proposed instruments that make use of optical fibers, particularly when the fibers are in continual motion during an observation, or experience repeated mechanical stress during their deployment.

IMPS, A Static-Optics Application of Full-Stokes Spectropolarimetry to Search for Extraterrestrial Biosignatures

NASA Astrophysics Data System (ADS)

Telesco, C. M.; Sparks, W. B.; Zhao, B.; Varosi, F.; Schofield, S.; Germer, T. A.; Kolokolova, L.; Parenteau, M. N.; Cooper, G.; Grundy, W. M.; Guzmán, R.; Pantin, E.

2016-12-01

Optical spectropolarimetry holds great promise in the search for extraterrestrial life. In particular, the detection of circular polarization can indicate chirality, a signature of biological significance. We describe an on-going effort to implement the full-Stokes (I, Q, U, V), static-optics concept for optical spectropolarimetry described by Sparks et al. [App. Optics, 51, 5495 (2012)]. Our early breadboard embodiments of the concept demonstrate its simplicity and indicate its potential for space missions in which a compact design with no moving parts is crucial to achieve the mission goals. We describe the instrument, called the Integrated Miniature Polarimeter and Spectrograph (IMPS), and consider one example for its deployment: a mission to land on an outer solar system body such as Europa.

The role of birds in the epizootiology of eastern encephalitis

USGS Publications Warehouse

Herman, C.M.

1962-01-01

Eastern encephalitis is a disease of horses, man, birds, and reptiles caused by a virus that in some hosts results in an inflammation of the brain. The causative virus belongs to a group classified as mosquito-borne encephalitides. This disease, more commonly called eastern equine encephalitis in the past, occurs from Wisconsin and Texas to the Atlantic coast and is particularly prevalent on our eastern seaboard.

New arenavirus isolated in Brazil

PubMed Central

Coimbra, Terezinha Lisieux M; Nassar, Elza S; Burattini, Marcelo N; de Souza, Luiza Terezinha Madia; Ferreira, Ivani B; Rocco, Iray M; Travassos da Rosa, Amelia P A; Vasconcelos, Pedro F C; Pinheiro, Francisco P; LeDuc, James W; Rico-Hesse, Rebeca; Gonzalez, Jean-Paul; Jahrling, Peter B

2012-01-01

A new arenavirus, called Sabiá, was isolated in Brazil from a fatal case of haemorrhagic fever initially thought to be yellow fever. Antigenic and molecular characterisation indicated that Sabiá virus is a new member of the Tacaribe complex. A laboratory technician working with the agent was also infected and developed a prolonged, non-fatal influenza-like illness. Sabiá virus is yet another arenavirus causing human disease in South America. PMID:7905555

A decade of improvements in Mimiviridae and Marseilleviridae isolation from amoeba.

PubMed

Pagnier, Isabelle; Reteno, Dorine-Gaelle Ikanga; Saadi, Hanene; Boughalmi, Mondher; Gaia, Morgan; Slimani, Meriem; Ngounga, Tatsiana; Bekliz, Meriem; Colson, Philippe; Raoult, Didier; La Scola, Bernard

2013-01-01

Since the isolation of the first giant virus, the Mimivirus, by T.J. Rowbotham in a cooling tower in Bradford, UK, and after its characterisation by our group in 2003, we have continued to develop novel strategies to isolate additional strains. By first focusing on cooling towers using our original time-consuming procedure, we were able to isolate a new lineage of giant virus called Marseillevirus and a new Mimivirus strain called Mamavirus. In the following years, we have accumulated the world's largest unique collection of giant viruses by improving the use of antibiotic combinations to avoid bacterial contamination of amoeba, developing strategies of preliminary screening of samples by molecular methods, and using a high-throughput isolation method developed by our group. Based on the inoculation of nearly 7,000 samples, our collection currently contains 43 strains of Mimiviridae (14 in lineage A, 6 in lineage B, and 23 in lineage C) and 17 strains of Marseilleviridae isolated from various environments, including 3 of human origin. This study details the procedures used to build this collection and paves the way for the high-throughput isolation of new isolates to improve the record of giant virus distribution in the environment and the determination of their pangenome.

DenHunt - A Comprehensive Database of the Intricate Network of Dengue-Human Interactions

PubMed Central

Arjunan, Selvam; Sastri, Narayan P.; Chandra, Nagasuma

2016-01-01

Dengue virus (DENV) is a human pathogen and its etiology has been widely established. There are many interactions between DENV and human proteins that have been reported in literature. However, no publicly accessible resource for efficiently retrieving the information is yet available. In this study, we mined all publicly available dengue–human interactions that have been reported in the literature into a database called DenHunt. We retrieved 682 direct interactions of human proteins with dengue viral components, 382 indirect interactions and 4120 differentially expressed human genes in dengue infected cell lines and patients. We have illustrated the importance of DenHunt by mapping the dengue–human interactions on to the host interactome and observed that the virus targets multiple host functional complexes of important cellular processes such as metabolism, immune system and signaling pathways suggesting a potential role of these interactions in viral pathogenesis. We also observed that 7 percent of the dengue virus interacting human proteins are also associated with other infectious and non-infectious diseases. Finally, the understanding that comes from such analyses could be used to design better strategies to counteract the diseases caused by dengue virus. The whole dataset has been catalogued in a searchable database, called DenHunt (http://proline.biochem.iisc.ernet.in/DenHunt/). PMID:27618709

DenHunt - A Comprehensive Database of the Intricate Network of Dengue-Human Interactions.

PubMed

Karyala, Prashanthi; Metri, Rahul; Bathula, Christopher; Yelamanchi, Syam K; Sahoo, Lipika; Arjunan, Selvam; Sastri, Narayan P; Chandra, Nagasuma

2016-09-01

Dengue virus (DENV) is a human pathogen and its etiology has been widely established. There are many interactions between DENV and human proteins that have been reported in literature. However, no publicly accessible resource for efficiently retrieving the information is yet available. In this study, we mined all publicly available dengue-human interactions that have been reported in the literature into a database called DenHunt. We retrieved 682 direct interactions of human proteins with dengue viral components, 382 indirect interactions and 4120 differentially expressed human genes in dengue infected cell lines and patients. We have illustrated the importance of DenHunt by mapping the dengue-human interactions on to the host interactome and observed that the virus targets multiple host functional complexes of important cellular processes such as metabolism, immune system and signaling pathways suggesting a potential role of these interactions in viral pathogenesis. We also observed that 7 percent of the dengue virus interacting human proteins are also associated with other infectious and non-infectious diseases. Finally, the understanding that comes from such analyses could be used to design better strategies to counteract the diseases caused by dengue virus. The whole dataset has been catalogued in a searchable database, called DenHunt (http://proline.biochem.iisc.ernet.in/DenHunt/).

Characterization of a prototype strain of hepatitis E virus.

PubMed Central

Tsarev, S A; Emerson, S U; Reyes, G R; Tsareva, T S; Legters, L J; Malik, I A; Iqbal, M; Purcell, R H

1992-01-01

A strain of hepatitis E virus (SAR-55) implicated in an epidemic of enterically transmitted non-A, non-B hepatitis, now called hepatitis E, was characterized extensively. Six cynomolgus monkeys (Macaca fascicularis) were infected with a strain of hepatitis E virus from Pakistan. Reverse transcription-polymerase chain reaction was used to determine the pattern of virus shedding in feces, bile, and serum relative to hepatitis and induction of specific antibodies. Virtually the entire genome of SAR-55 (7195 nucleotides) was sequenced. Comparison of the sequence of SAR-55 with that of a Burmese strain revealed a high level of homology except for one region encoding 100 amino acids of a putative nonstructural polyprotein. Identification of this region as hypervariable was obtained by partial sequencing of a third isolate of hepatitis E virus from Kirgizia. Images PMID:1731327

The Spartan-281 Far Ultraviolet Imaging Spectrograph

NASA Technical Reports Server (NTRS)

Carruthers, George R.; Heckathorn, Harry M.; Dufour, Reginald J.; Opal, Chet B.; Raymond, John C.

1988-01-01

The U.S. Naval Research Laboratory's Far Ultraviolet Imaging Spectrograph (FUVIS), currently under development for flight as a Spartan shuttle payload, is designed to perform spectroscopy of diffuse sources in the FUV with very high sensitivity and moderate spatial and spectral resolution. Diffuse nebulae, the general galactic background radiation, and artificially induced radiation associated with the Space Shuttle vehicle are sources of particular interest. The FUVIS instrument will cover the wavelength range of 970-2000 A with selectable resolutions of 5 and 30 A. It is a slit imaging spectrograph having 3 arcmin spatial resolution along its 2.7 deg long slit.

A Search for Rarely Seen Ultraviolet Coma Emissions and New Species Upper Limits at Comet 67P/Churyumov-Gerasimenko Using the Rosetta-Alice Ultraviolet Spectrograph

NASA Astrophysics Data System (ADS)

Noonan, J.; Stern, S. A.; Parker, J. W.; Keeney, B. A.; Weaver, H. A., Jr.; Feldman, P.; Steffl, A.; Feaga, L. M.; Bertaux, J. L.

2017-12-01

The Alice far/extreme-UV spectrograph aboard Rosetta is one of three US instruments provided by NASA; it is the first UV spectrograph to reach any comet. Numerous scientific results have been obtained regarding 67P/Churyumov-Gerasimenko by this instrument. Here we summarize two new sets of results from a search for rarely appearing atomic and molecular spectral emission features and a grand sum spectrum allowing us to place new atomic and molecular neutral and ionized species upper limits in the comet's coma.

Performance testing of an off-plane reflection grating and silicon pore optic spectrograph at PANTER

NASA Astrophysics Data System (ADS)

Marlowe, Hannah; McEntaffer, Randall L.; Allured, Ryan; DeRoo, Casey T.; Donovan, Benjamin D.; Miles, Drew M.; Tutt, James H.; Burwitz, Vadim; Menz, Benedikt; Hartner, Gisela D.; Smith, Randall K.; Cheimets, Peter; Hertz, Edward; Bookbinder, Jay A.; Günther, Ramses; Yanson, Alex; Vacanti, Giuseppe; Ackermann, Marcelo

2015-10-01

An x-ray spectrograph consisting of aligned, radially ruled off-plane reflection gratings and silicon pore optics (SPO) was tested at the Max Planck Institute for Extraterrestrial Physics PANTER x-ray test facility. SPO is a test module for the proposed Arcus mission, which will also feature aligned off-plane reflection gratings. This test is the first time two off-plane gratings were actively aligned to each other and with an SPO to produce an overlapped spectrum. We report the performance of the complete spectrograph utilizing the aligned gratings module and plans for future development.

Lhires III High Resolution Spectrograph

NASA Astrophysics Data System (ADS)

Thizy, O.

2007-05-01

By spreading the light from celestial objects by wavelength, spectroscopists are like detectives looking for clues and identifying guilty phenomena that shape their spectra. We will review some basic principles in spectroscopy that will help, at our amateur level, to understand how spectra are shaped. We will review the Lhires III highresolution spectrograph Mark Three that was designed to reveal line profile details and subtle changes. Then, we will do an overview of educational and scientific projects that are conducted with the Lhires III and detail the COROT Be star program and the BeSS database for which the spectrograph is a key instrument.

A soft x-ray octadecyl hydrogen maleate crystal spectrograph

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fan, P.Z.; Fill, E.E.; Tietang, G.

1996-03-01

A crystal spectrograph is described which can be used to investigate laser-produced plasmas in the region of soft x rays at wavelengths of up to 60 A. The spectrograph uses an octadecyl hydrogen maleate crystal with a 2{ital d} of 63.5 A, combined with a very thin carbon filter (3000 A thick). As examples of its application, soft x-ray spectra in the range of 43{endash}51 A from laser plasmas of Si and Cu are presented. A spectral resolution of {lambda}/{Delta}{lambda}=1100 is deduced from the spectra. {copyright} {ital 1996 American Institute of Physics.}

Collimating slicer for optical integral field spectroscopy

NASA Astrophysics Data System (ADS)

Laurent, Florence; Hénault, François

2016-07-01

Integral Field Spectroscopy (IFS) is a technique that gives simultaneously the spectrum of each spatial sampling element of a given field. It is a powerful tool which rearranges the data cube represented by two spatial dimensions defining the field and the spectral decomposition (x, y, λ) in a detector plane. In IFS, the "spatial" unit reorganizes the field, the "spectral" unit is being composed of a classical spectrograph. For the spatial unit, three main techniques - microlens array, microlens array associated with fibres and image slicer - are used in astronomical instrumentations. The development of a Collimating Slicer is to propose a new type of optical integral field spectroscopy which should be more compact. The main idea is to combine the image slicer with the collimator of the spectrograph mixing the "spatial" and "spectral" units. The traditional combination of slicer, pupil and slit elements and spectrograph collimator is replaced by a new one composed of a slicer and spectrograph collimator only. After testing few configurations, this new system looks very promising for low resolution spectrographs. In this paper, the state of art of integral field spectroscopy using image slicers will be described. The new system based onto the development of a Collimating Slicer for optical integral field spectroscopy will be depicted. First system analysis results and future improvements will be discussed.

Development of integrated photonic-dicers for reformatting the point-spread-function of a telescope

NASA Astrophysics Data System (ADS)

MacLachlan, David G.; Harris, Robert; Choudhury, Debaditya; Arriola, Alexander; Brown, Graeme; Allington-Smith, Jeremy; Thomson, Robert R.

2014-07-01

Spectroscopy is a technique of paramount importance to astronomy, as it enables the chemical composition, distances and velocities of celestial objects to be determined. As the diameter of a ground-based telescope increases, the pointspread- function (PSF) becomes increasingly degraded due to atmospheric seeing. A degraded PSF requires a larger spectrograph slit-width for efficient coupling and current spectrographs for large telescopes are already on the metre scale. This presents numerous issues in terms of manufacturability, cost and stability. As proposed in 2010 by Bland-Hawthorn et al, one approach which may help to improve spectrograph stability is a guided wave transition, known as a "photonic-lantern". These devices enable the low-loss reformatting of a multimode PSF into a diffraction-limited source (in one direction). This pseudo-slit can then be used as the input to a traditional spectrograph operating at the diffraction limit. In essence, this approach may enable the use of diffractionlimited spectrographs on large telescopes without an unacceptable reduction in throughput. We have recently demonstrated that ultrafast laser inscription can be used to realize "integrated" photoniclanterns, by directly writing three-dimensional optical waveguide structures inside a glass substrate. This paper presents our work on developing ultrafast laser inscribed devices capable of reformatting a multimode telescope PSF into a diffraction-limited slit.

Evaluation of a National Call Center and a Local Alerts System for Detection of New Cases of Ebola Virus Disease - Guinea, 2014-2015.

PubMed

Lee, Christopher T; Bulterys, Marc; Martel, Lise D; Dahl, Benjamin A

2016-03-11

The epidemic of Ebola virus disease (Ebola) in West Africa began in Guinea in late 2013 (1), and on August 8, 2014, the World Health Organization (WHO) declared the epidemic a Public Health Emergency of International Concern (2). Guinea was declared Ebola-free on December 29, 2015, and is under a 90 day period of enhanced surveillance, following 3,351 confirmed and 453 probable cases of Ebola and 2,536 deaths (3). Passive surveillance for Ebola in Guinea has been conducted principally through the use of a telephone alert system. Community members and health facilities report deaths and suspected Ebola cases to local alert numbers operated by prefecture health departments or to a national toll-free call center. The national call center additionally functions as a source of public health information by responding to questions from the public about Ebola. To evaluate the sensitivity of the two systems and compare the sensitivity of the national call center with the local alerts system, the CDC country team performed probabilistic record linkage of the combined prefecture alerts database, as well as the national call center database, with the national viral hemorrhagic fever (VHF) database; the VHF database contains records of all known confirmed Ebola cases. Among 17,309 alert calls analyzed from the national call center, 71 were linked to 1,838 confirmed Ebola cases in the VHF database, yielding a sensitivity of 3.9%. The sensitivity of the national call center was highest in the capital city of Conakry (11.4%) and lower in other prefectures. In comparison, the local alerts system had a sensitivity of 51.1%. Local public health infrastructure plays an important role in surveillance in an epidemic setting.

Vaccines for emerging infectious diseases: Lessons from MERS coronavirus and Zika virus.

PubMed

Maslow, Joel N

2017-12-02

The past decade and a half has been characterized by numerous emerging infectious diseases. With each new threat, there has been a call for rapid vaccine development. Pathogens such as the Middle East Respiratory Syndrome coronavirus (MERS-CoV) and the Zika virus represent either new viral entities or viruses emergent in new geographic locales and characterized by novel complications. Both serve as paradigms for the global spread that can accompany new pathogens. In this paper, we review the epidemiology and pathogenesis of MERS-CoV and Zika virus with respect to vaccine development. The challenges in vaccine development and the approach to clinical trial design to test vaccine candidates for disease entities with a changing epidemiology are discussed.

Vaccines for emerging infectious diseases: Lessons from MERS coronavirus and Zika virus

PubMed Central

Maslow, Joel N.

2017-01-01

ABSTRACT The past decade and a half has been characterized by numerous emerging infectious diseases. With each new threat, there has been a call for rapid vaccine development. Pathogens such as the Middle East Respiratory Syndrome coronavirus (MERS-CoV) and the Zika virus represent either new viral entities or viruses emergent in new geographic locales and characterized by novel complications. Both serve as paradigms for the global spread that can accompany new pathogens. In this paper, we review the epidemiology and pathogenesis of MERS-CoV and Zika virus with respect to vaccine development. The challenges in vaccine development and the approach to clinical trial design to test vaccine candidates for disease entities with a changing epidemiology are discussed. PMID:28846484

Chemical abundances of fast-rotating massive stars. I. Description of the methods and individual results

NASA Astrophysics Data System (ADS)

Cazorla, Constantin; Morel, Thierry; Nazé, Yaël; Rauw, Gregor; Semaan, Thierry; Daflon, Simone; Oey, M. S.

2017-07-01

Aims: Recent observations have challenged our understanding of rotational mixing in massive stars by revealing a population of fast-rotating objects with apparently normal surface nitrogen abundances. However, several questions have arisen because of a number of issues, which have rendered a reinvestigation necessary; these issues include the presence of numerous upper limits for the nitrogen abundance, unknown multiplicity status, and a mix of stars with different physical properties, such as their mass and evolutionary state, which are known to control the amount of rotational mixing. Methods: We have carefully selected a large sample of bright, fast-rotating early-type stars of our Galaxy (40 objects with spectral types between B0.5 and O4). Their high-quality, high-resolution optical spectra were then analysed with the stellar atmosphere modelling codes DETAIL/SURFACE or CMFGEN, depending on the temperature of the target. Several internal and external checks were performed to validate our methods; notably, we compared our results with literature data for some well-known objects, studied the effect of gravity darkening, or confronted the results provided by the two codes for stars amenable to both analyses. Furthermore, we studied the radial velocities of the stars to assess their binarity. Results: This first part of our study presents our methods and provides the derived stellar parameters, He, CNO abundances, and the multiplicity status of every star of the sample. It is the first time that He and CNO abundances of such a large number of Galactic massive fast rotators are determined in a homogeneous way. Based on observations obtained with the Heidelberg Extended Range Optical Spectrograph (HEROS) at the Telescopio Internacional de Guanajuato (TIGRE) with the SOPHIE échelle spectrograph at the Haute-Provence Observatory (OHP; Institut Pytheas; CNRS, France), and with the Magellan Inamori Kyocera Echelle (MIKE) spectrograph at the Magellan II Clay telescope. Based also on archival data from the Galactic O-Star Spectroscopic Survey (GOSSS), the Anglo-Australian Telescope (AAT) equipped with the University College London Echelle Spectrograph (UCLES), the ESO/La Silla Observatory with the Fiber-fed Extended Range Optical Spectrograph (FEROS; programmes 70.D-0110, 075.D-0061, 076.C-0431, 081.D-2008, 083.D-0589, 086.D-0997, 087.D-0946, 089.D-0189, 089.D-0975, 179.C-0197, and the High Accuracy Radial velocity Planet Searcher (HARPS; programme 60.A-9036), the Pic du Midi Observatory equipped with the NARVAL spectropolarimeter, the San Pedro Mártir (SPM) observatory with the Echelle SPectrograph for Rocky Exoplanet and Stable Spectroscopic Observations (ESPRESSO), the OHP with the AURELIE and ELODIE échelle spectrographs, the Nordic Optical Telescope (NOT) with the FIbre-fed Echelle Spectrograph (FIES), the Canada-France-Hawaii Telescope (CFHT), with the Echelle SpectroPolarimetric Device for the Observation of Stars (ESPaDOnS) spectrograph, the Leonhard Euler Telescope with the CORALIE spectrograph.Table F.2 is also available at the CDS via anonymous ftp to http://cdsarc.u-strasbg.fr (http://130.79.128.5) or via http://cdsarc.u-strasbg.fr/viz-bin/qcat?J/A+A/603/A56

The optical design of solar spectrograph

NASA Astrophysics Data System (ADS)

Zhang, Yang; Pan, Wen-Qiang; Meng, Xiang-Yue; Lv, Xian-Kui; Feng, Jie; Zhu, Jia-Wei; Zhang, Xiao-Xiao; Li, Lei; Yang, Wei-Ping

2017-08-01

At the beginning of this paper, we simply describe the theories of spectrograph and the operating principle of grating. Based on the Spectrometer theory and optical theory we design a solar spectrograph by analyzing and calculating. And the working waveband of this solar spectrograph is between 510nm and 540nm. Besides, according to the design data, we ensure the blaze level of grating and the focal length of collimate. Due to the presence of the collimate in the optical structure, astigmatism exists in the system. For this reason, we add a cylindrical lens to the structure to correct. The optical system is characterized by using white-pupil design and folding light path to make the whole system simple. In the end, according to the calculated design parameters, we use the Zemax software for simulation, then the result is RMS only has 4μm at the 520nm. It's worth nothing that the resolution merely near the reference wavelength (520nm)meets the design requirements.

The Ultraviolet Spectrograph on NASA's Juno Mission

NASA Astrophysics Data System (ADS)

Gladstone, G. Randall; Persyn, Steven C.; Eterno, John S.; Walther, Brandon C.; Slater, David C.; Davis, Michael W.; Versteeg, Maarten H.; Persson, Kristian B.; Young, Michael K.; Dirks, Gregory J.; Sawka, Anthony O.; Tumlinson, Jessica; Sykes, Henry; Beshears, John; Rhoad, Cherie L.; Cravens, James P.; Winters, Gregory S.; Klar, Robert A.; Lockhart, Walter; Piepgrass, Benjamin M.; Greathouse, Thomas K.; Trantham, Bradley J.; Wilcox, Philip M.; Jackson, Matthew W.; Siegmund, Oswald H. W.; Vallerga, John V.; Raffanti, Rick; Martin, Adrian; Gérard, J.-C.; Grodent, Denis C.; Bonfond, Bertrand; Marquet, Benoit; Denis, François

2017-11-01

The ultraviolet spectrograph instrument on the Juno mission (Juno-UVS) is a long-slit imaging spectrograph designed to observe and characterize Jupiter's far-ultraviolet (FUV) auroral emissions. These observations will be coordinated and correlated with those from Juno's other remote sensing instruments and used to place in situ measurements made by Juno's particles and fields instruments into a global context, relating the local data with events occurring in more distant regions of Jupiter's magnetosphere. Juno-UVS is based on a series of imaging FUV spectrographs currently in flight—the two Alice instruments on the Rosetta and New Horizons missions, and the Lyman Alpha Mapping Project on the Lunar Reconnaissance Orbiter mission. However, Juno-UVS has several important modifications, including (1) a scan mirror (for targeting specific auroral features), (2) extensive shielding (for mitigation of electronics and data quality degradation by energetic particles), and (3) a cross delay line microchannel plate detector (for both faster photon counting and improved spatial resolution). This paper describes the science objectives, design, and initial performance of the Juno-UVS.

VizieR Online Data Catalog: Radial velocity follow-up of the HD 3167 system (Gandolfi+, 2017)

NASA Astrophysics Data System (ADS)

Gandolfi, D.; Barragan, O.; Hatzes, A. P.; Fridlund, M.; Fossati, L.; Donati, P.; Johnson, M. C.; Nowak, G.; Prieto-Arranz, J.; Albrecht, S.; Dai, F.; Deeg, H.; Endl, M.; Grziwa, S.; Hjorth, M.; Korth, J.; Nespral, D.; Saario, J.; Smith, A. M. S.; Antoniciello, G.; Alarcon, J.; Bedell, M.; Blay, P.; Brems, S. S.; Cabrera, J.; Csizmadia, S.; Cusano, F.; Cochran, W. D.; Eigmuller, P.; Erikson, A.; Gonzalez Hernandez, J. I.; Guenther, E. W.; Hirano, T.; Suarez Mascareno, A.; Narita, N.; Palle, E.; Parviainen, H.; Patzold, M.; Persson, C. M.; Rauer, H.; Saviane, I.; Schmidtobreick, L.; van Eylen, V.; Winn, J. N.; Zakhozhay, O. V.

2018-06-01

We used the FIbre-fed Echelle Spectrograph (FIES; Frandsen & Lindberg 1999anot.conf...71F; Telting et al. 2014AN....335...41T) mounted at the 2.56 m Nordic Optical Telescope (NOT) of Roque de los Muchachos Observatory (La Palma, Spain) to acquire 37 high-resolution spectra (R~67000) in 12 different nights between July and September 2016. We also acquired 50 spectra with the HARPS spectrograph (R~115000; Mayor et al. 2003Msngr.114...20M) and 32 spectra with the HARPS-N spectrograph (R~115000; Cosentino et al. 2012SPIE.8446E..1VC). HARPS and HARPS-N are fiber-fed cross-dispersed echelle spectrographs specifically designed to achieve very high-precision long-term RV stabilities (<1 m/s). They are mounted at the ESO-3.6 m telescope of La Silla observatory (Chile) and at the 3.58 m Telescopio Nazionale Galileo (TNG) of Roque de los Muchachos Observatory (La Palma, Spain). (1 data file).

Integration and testing of the DESI spectrograph prototype

NASA Astrophysics Data System (ADS)

Perruchot, S.; Secroun, A.; Blanc, P.-E.; Ronayette, S.; Régal, X.; Castagnoli, G.; Le Van Suu, A.; Ealet, A.; Cuby, J.-G.; Elliot, A.; Honscheid, K.; Jelinsky, P.

2016-08-01

The Dark Energy Spectroscopic Instrument (DESI) is under construction to measure the expansion history of the Universe using the Baryon Acoustic Oscillation probe. The KPNO Mayall telescope will deliver light to 5000 fibers feeding ten broadband spectrographs. A consortium of Aix-Marseille University (AMU) and CNRS laboratories (LAM, OHP and CPPM) together with the WINLIGHT Systems company (Pertuis-France) has committed to integrate and validate the performance requirements of the full spectrographs, equipped with their cryostats, shutters and other mechanisms. An AIT plan has been defined and dedicated test equipment has been designed and implemented. This equipment simulates the fiber input illumination from the telescope, and offers a variety of continuum and line sources. Flux levels are adjustable and can illuminate one or several fibers along the test slit. It is fully remotely controlled and interfaced to the Instrument Control System. Specific analysis tools have also been developed to verify and monitor the performance and stability of the spectrographs. All these developments are described in details.

VizieR Online Data Catalog: SPT-SZ survey galaxy clusters optical spectroscopy (Ruel+, 2014)

NASA Astrophysics Data System (ADS)

Ruel, J.; Bazin, G.; Bayliss, M.; Brodwin, M.; Foley, R. J.; Stalder, B.; Aird, K. A.; Armstrong, R.; Ashby, M. L. N.; Bautz, M.; Benson, B. A.; Bleem, L. E.; Bocquet, S.; Carlstrom, J. E.; Chang, C. L.; Chapman, S. C.; Cho, H. M.; Clocchiatti, A.; Crawford, T. M.; Crites, A. T.; de Haan, T.; Desai, S.; Dobbs, M. A.; Dudley, J. P.; Forman, W. R.; George, E. M.; Gladders, M. D.; Gonzalez, A. H.; Halverson, N. W.; Harrington, N. L.; High, F. W.; Holder, G. P.; Holzapfel, W. L.; Hrubes, J. D.; Jones, C.; Joy, M.; Keisler, R.; Knox, L.; Lee, A. T.; Leitch, E. M.; Liu, J.; Lueker, M.; Luong-van, D.; Mantz, A.; Marrone, D. P.; McDonald, M.; McMahon, J. J.; Mehl, J.; Meyer, S. S.; Mocanu, L.; Mohr, J. J.; Montroy, T. E.; Murray, S. S.; Natoli, T.; Nurgaliev, D.; Padin, S.; Plagge, T.; Pryke, C.; Reichardt, C. L.; Rest, A.; Ruhl, J. E.; Saliwanchik, B. R.; Saro, A.; Sayre, J. T.; Schaffer, K. K.; Shaw, L.; Shirokoff, E.; Song, J.; Suhada, R.; Spieler, H. G.; Stanford, S. A.; Staniszewski, Z.; Starsk, A. A.; Story, K.; Stubbs, C. W.; van Engelen, A.; Vanderlinde, K.; Vieira, J. D.; Vikhlinin, A.; Williamson, R.; Zahn, O.; Zenteno, A.

2017-04-01

Most of the galaxy clusters for which we report spectroscopic observations were published as SPT cluster detections (and new discoveries) in Vanderlinde et al. (2010ApJ...722.1180V), Williamson et al. (2011ApJ...738..139W), and Reichardt et al. (2013, J/ApJ/763/127); we refer the reader to those publications for details of the SPT observations. The spectroscopic observations presented in this work are the first of our ongoing follow-up program. The data were taken from 2008 to 2012 using the Gemini Multi Object Spectrograph (GMOS; Hook et al. 2004PASP..116..425H) on Gemini South, the Focal Reducer and low dispersion Spectrograph (FORS2; Appenzeller et al. 1998Msngr..94....1A) on VLT Antu, the Inamori Magellan Areal Camera and Spectrograph (IMACS; Dressler et al. 2006SPIE.6269E..0FD) on Magellan Baade, and the Low Dispersion Survey Spectrograph (LDSS339; Allington-Smith et al. 1994PASP..106..983A) on Magellan Clay. (2 data files).

VizieR Online Data Catalog: Very metal-poor stars in the Milky Way's halo (Carollo+, 2014)

NASA Astrophysics Data System (ADS)

Carollo, D.; Freeman, K.; Beers, T. C.; Placco, V. M.; Tumlinson, J.; Martell, S. L.

2017-07-01

The Aoki et al. (2013, J/AJ/145/13) sample comprises 137 stars observed at high spectral resolution (R~30000), in the course of four observing runs between 2008 March and October, using the High Dispersion Spectrograph (Noguchi et al. 2002PASJ...54..855N) at the Subaru Telescope. We also include 190 stars from the Yong et al. (2013, J/ApJ/762/26) sample - the 38 stars from their "program sample," and 152 stars in their literature compilation. High-resolution spectra (22000

Biological Templating and the Production of Functional Fibers

DTIC Science & Technology

2006-11-01

technique to express designed functional peptides on the virus surface is so-called phage display . It has been widely used to modify the virus surface...and functionality. By using the phage display technique, short peptides containing 2 to 12 random amino acids can be fused into pIII proteins to... M13 filamentous bacteriophage were spun into continuous microfibers. These fibers can be made out of pure phage solution or a blended solution of

Physical mode of bacteria and virus coevolution

NASA Astrophysics Data System (ADS)

Han, Pu; Niestemski, Liang; Deem, Michael

2013-03-01

Single-cell hosts such as bacteria or archaea possess an adaptive, heritable immune system that protects them from viral invasion. This system, known as the CRISPR-Cas system, allows the host to recognize and incorporate short foreign DNA or RNA sequences from viruses or plasmids. The sequences form what are called ``spacers'' in the CRISPR. Spacers in the CRISPR loci provide a record of the host and predator coevolution history. We develop a physical model to study the dynamics of this coevolution due to immune pressure. Hosts and viruses reproduce, die, and evolve due to viral infection pressure, host immune pressure, and mutation. We will discuss the differing effects of point mutation and recombination on CRISPR evolution. We will also discuss the effect of different spacer deletion mechanisms. We will describe population structure of hosts and viruses, how spacer diversity depends on position within CRISPR, and match of the CRISPR spacers to the virus population.

A review on the antagonist Ebola: A prophylactic approach.

PubMed

Khan, Fatima Nazish; Qazi, Sahar; Tanveer, Khushnuma; Raza, Khalid

2017-12-01

Ebola virus (EBOV), a member of Filoviridae virus family under the genus Ebolavirus, has emerged as a dangerous and potential threat to human health globally. It causes a severe and deadly hemorrhagic fever in humans and other mammals, called Ebola Virus Disease (EVD). In recent outbreaks of EVD, there has been loss of large numbers of individual's life. Therefore, EBOV has attracted researchers and increased interests in developing new models for virus evolution, and therapies. The EBOV interacts with the immune system of the host which led to understand how the virus functions and effects immune system behaviour. This article presents an exhaustive review on Ebola research which includes EVD illness, symptoms, transmission patterns, patho-physiology conditions, development of antiviral agents and vaccines, resilient health system, dynamics and mathematical model of EBOV, challenges and prospects for future studies. Copyright © 2017 Elsevier Masson SAS. All rights reserved.

High resolution spectrograph. [for LST

NASA Technical Reports Server (NTRS)

Peacock, K.

1975-01-01

The high resolution spectrograph (HRS) is designed to be used with the Large Space Telescope (LST) for the study of spectra of point and extended targets in the spectral range 110 to 410 nm. It has spectral resolutions of 1,000; 30,000; and 100,000 and has a field of view as large as 10 arc sec. The spectral range and resolution are selectable using interchangeable optical components and an echelle spectrograph is used to display a cross dispersed spectrum on the photocathode of either of 2 SEC orthicon image tubes. Provisions are included for wavelength calibration, target identification and acquisition and thermal control. The system considerations of the instrument are described.

FIEStool: Automated data reduction for FIber-fed Echelle Spectrograph (FIES)

NASA Astrophysics Data System (ADS)

Stempels, Eric; Telting, John

2017-08-01

FIEStool automatically reduces data obtained with the FIber-fed Echelle Spectrograph (FIES) at the Nordic Optical Telescope, a high-resolution spectrograph available on a stand-by basis, while also allowing the basic properties of the reduction to be controlled in real time by the user. It provides a Graphical User Interface and offers bias subtraction, flat-fielding, scattered-light subtraction, and specialized reduction tasks from the external packages IRAF (ascl:9911.002) and NumArray. The core of FIEStool is instrument-independent; the software, written in Python, could with minor modifications also be used for automatic reduction of data from other instruments.

Performance testing of a novel off-plane reflection grating and silicon pore optic spectrograph at PANTER

NASA Astrophysics Data System (ADS)

Marlowe, Hannah; McEntaffer, Randall L.; Allured, Ryan; DeRoo, Casey; Miles, Drew M.; Donovan, Benjamin D.; Tutt, James H.; Burwitz, Vadim; Menz, Benedikt; Hartner, Gisela D.; Smith, Randall K.; Günther, Ramses; Yanson, Alex; Vacanti, Giuseppe; Ackermann, Marcelo

2015-05-01

An X-ray spectrograph consisting of aligned, radially ruled off-plane reflection gratings and silicon pore optics (SPO) was tested at the Max Planck Institute for extraterrestrial Physics PANTER X-ray test facility. The SPO is a test module for the proposed Arcus mission, which will also feature aligned off-plane reflection gratings. This test is the first time two off-plane gratings were actively aligned to each other and with a SPO to produce an overlapped spectrum. We report the performance of the complete spectrograph utilizing the aligned gratings module and plans for future development.

PISCES: An Integral Field Spectrograph Technology Demonstration for the WFIRST Coronagraph

NASA Technical Reports Server (NTRS)

McElwain, Michael W.; Mandell, Avi M.; Gong, Qian; Llop-Sayson, Jorge; Brandt, Timothy; Chambers, Victor J.; Grammer, Bryan; Greeley, Bradford; Hilton, George; Perrin, Marshall D.;

PISCES: an integral field spectrograph technology demonstration for the WFIRST coronagraph

NASA Astrophysics Data System (ADS)

McElwain, Michael W.; Mandell, Avi M.; Gong, Qian; Llop-Sayson, Jorge; Brandt, Timothy; Chambers, Victor J.; Grammer, Bryan; Greeley, Bradford; Hilton, George; Perrin, Marshall D.; Stapelfeldt, Karl R.; Demers, Richard; Tang, Hong; Cady, Eric

2016-07-01

We present the design, integration, and test of the Prototype Imaging Spectrograph for Coronagraphic Exoplanet Studies (PISCES) integral field spectrograph (IFS). The PISCES design meets the science requirements for the Wide-Field InfraRed Survey Telescope (WFIRST) Coronagraph Instrument (CGI). PISCES was integrated and tested in the integral field spectroscopy laboratory at NASA Goddard. In June 2016, PISCES was delivered to the Jet Propulsion Laboratory (JPL) where it was integrated with the Shaped Pupil Coronagraph (SPC) High Contrast Imaging Testbed (HCIT). The SPC/PISCES configuration will demonstrate high contrast integral field spectroscopy as part of the WFIRST CGI technology development program.

TAIPAN fibre feed and spectrograph: engineering overview

NASA Astrophysics Data System (ADS)

Staszak, Nicholas F.; Lawrence, Jon; Zhelem, Ross; Content, Robert; Churilov, Vladimir; Case, Scott; Brown, Rebecca; Hopkins, Andrew M.; Kuehn, Kyler; Pai, Naveen; Klauser, Urs; Nichani, Vijay; Waller, Lew

2016-07-01

TAIPAN will conduct a stellar and galaxy survey of the Southern sky. The TAIPAN positioner is being developed as a prototype for the MANIFEST instrument on the GMT. The TAIPAN Spectrograph is an AAO designed all-refractive 2-arm design that delivers a spectral resolution of R>2000 over the wavelength range 370-870 nm. It is fed by a custom fibre cable from the TAIPAN Starbugs positioner. The design for TAIPAN incorporates 150 optical fibres (with an upgrade path to 300). Presented is an engineering overview of the UKST Fibre Cable design used to support Starbugs, the custom slit design, and the overall design and build plan for the TAIPAN Spectrograph.

SAMI: Sydney-AAO Multi-object Integral field spectrograph pipeline

NASA Astrophysics Data System (ADS)

Allen, J. T.; Green, A. W.; Fogarty, L. M. R.; Sharp, R.; Nielsen, J.; Konstantopoulos, I.; Taylor, E. N.; Scott, N.; Cortese, L.; Richards, S. N.; Croom, S.; Owers, M. S.; Bauer, A. E.; Sweet, S. M.; Bryant, J. J.

2014-07-01

The SAMI (Sydney-AAO Multi-object Integral field spectrograph) pipeline reduces data from the Sydney-AAO Multi-object Integral field spectrograph (SAMI) for the SAMI Galaxy Survey. The python code organizes SAMI data and, along with the AAO 2dfdr package, carries out all steps in the data reduction, from raw data to fully calibrated datacubes. The principal steps are: data management, use of 2dfdr to produce row-stacked spectra, flux calibration, correction for telluric absorption, removal of atmospheric dispersion, alignment of dithered exposures, and drizzling onto a regular output grid. Variance and covariance information is tracked throughout the pipeline. Some quality control routines are also included.

Achieving the resolution of the spectrograph of the 6m large Azimuthal telescope

NASA Astrophysics Data System (ADS)

Sazonenko, Dmitrii; Kukushkin, Dmitrii; Bakholdin, Alexey; Valyavin, Gennady

2016-08-01

Special Astrophysical Observatory of Russian Academy of Sciences (SAO RAS) creates a spectrograph with high spectral resolution for the 6-meter telescope. The spectrograph consists of a mobile unit located at the focus of the telescope's main mirror, a stationary part located under the telescope and optical fibers which transmit light from the mobile part to the stationary one. The spectral resolution of the stationary part should be R=100000. To achieve such a value, the scheme has two spectral elements, with cross-dispersion. The main spectral element is an echelle grating. The second spectral element is a prism with a diffraction grating on one facet.

A novel metaheuristic for continuous optimization problems: Virus optimization algorithm

NASA Astrophysics Data System (ADS)

Liang, Yun-Chia; Rodolfo Cuevas Juarez, Josue

2016-01-01

A novel metaheuristic for continuous optimization problems, named the virus optimization algorithm (VOA), is introduced and investigated. VOA is an iteratively population-based method that imitates the behaviour of viruses attacking a living cell. The number of viruses grows at each replication and is controlled by an immune system (a so-called 'antivirus') to prevent the explosive growth of the virus population. The viruses are divided into two classes (strong and common) to balance the exploitation and exploration effects. The performance of the VOA is validated through a set of eight benchmark functions, which are also subject to rotation and shifting effects to test its robustness. Extensive comparisons were conducted with over 40 well-known metaheuristic algorithms and their variations, such as artificial bee colony, artificial immune system, differential evolution, evolutionary programming, evolutionary strategy, genetic algorithm, harmony search, invasive weed optimization, memetic algorithm, particle swarm optimization and simulated annealing. The results showed that the VOA is a viable solution for continuous optimization.

CRISPR-Cas9, a tool to efficiently increase the development of recombinant African swine fever viruses.

PubMed

Borca, Manuel V; Holinka, Lauren G; Berggren, Keith A; Gladue, Douglas P

2018-02-16

African swine fever virus (ASFV) causes a highly contagious disease called African swine fever. This disease is often lethal for domestic pigs, causing extensive losses for the swine industry. ASFV is a large and complex double stranded DNA virus. Currently there is no commercially available treatment or vaccine to prevent this devastating disease. Development of recombinant ASFV for producing live-attenuated vaccines or studying the involvement of specific genes in virus virulence has relied on the relatively rare event of homologous recombination in primary swine macrophages, causing difficulty to purify the recombinant virus from the wild-type parental ASFV. Here we present the use of the CRISPR-Cas9 gene editing system as a more robust and efficient system to produce recombinant ASFVs. Using CRISPR-Cas9 a recombinant virus was efficiently developed by deleting the non-essential gene 8-DR from the genome of the highly virulent field strain Georgia07 using swine macrophages as cell substrate.

RNAi and retroviruses: are they in RISC?

PubMed

Vasselon, Thierry; Bouttier, Manuella; Saumet, Anne; Lecellier, Charles-Henri

2013-02-01

RNA interference (RNAi) is a potent cellular system against viruses in various organisms. Although common traits are observed in plants, insects, and nematodes, the situation observed in mammals appears more complex. In mammalian somatic cells, RNAi is implicated in endonucleolytic cleavage mediated by artificially delivered small interfering RNAs (siRNAs) as well as in translation repression mediated by microRNAs (miRNAs). Because siRNAs and miRNAs recognize viral mRNAs, RNAi inherently limits virus production and participates in antiviral defense. However, several observations made in the cases of hepatitis C virus and retroviruses (including the human immunodeficiency virus and the primate foamy virus) bring evidence that this relationship is much more complex and that certain components of the RNAi effector complex [called the RNA-induced silencing complex (RISC)], such as AGO2, are also required for viral replication. Here, we summarize recent discoveries that have revealed this dual implication in virus biology. We further discuss their potential implications for the functions of RNAi-related proteins, with special emphasis on retrotransposition and genome stability.

Role of the Insect Supervectors Bemisia tabaci and Frankliniella occidentalis in the Emergence and Global Spread of Plant Viruses.

PubMed

Gilbertson, Robert L; Batuman, Ozgur; Webster, Craig G; Adkins, Scott

2015-11-01

Emergence of insect-transmitted plant viruses over the past 10-20 years has been disproportionately driven by two so-called supervectors: the whitefly, Bemisia tabaci, and the Western flower thrips, Frankliniella occidentalis. High rates of reproduction and dispersal, extreme polyphagy, and development of insecticide resistance, together with human activities, have made these insects global pests. These supervectors transmit a diversity of plant viruses by different mechanisms and mediate virus emergence through local evolution, host shifts, mixed infections, and global spread. Associated virus evolution involves reassortment, recombination, and component capture. Emergence of B. tabaci-transmitted geminiviruses (begomoviruses), ipomoviruses, and torradoviruses has led to global disease outbreaks as well as multiple paradigm shifts. Similarly, F. occidentalis has mediated tospovirus host shifts and global dissemination and the emergence of pollen-transmitted ilarviruses. The plant virus-supervector interaction offers exciting opportunities for basic research and global implementation of generalized disease management strategies to reduce economic and environmental impacts.

A Multi-object Exoplanet Detecting Technique

NASA Astrophysics Data System (ADS)

Zhang, K.

2011-05-01

Exoplanet exploration is not only a meaningful astronomical action, but also has a close relation with the extra-terrestrial life. High resolution echelle spectrograph is the key instrument for measuring stellar radial velocity (RV). But with higher precision, better environmental stability and higher cost are required. An improved technique of RV means invented by David J. Erskine in 1997, External Dispersed Interferometry (EDI), can increase the RV measuring precision by combining the moderate resolution spectrograph with a fixed-delay Michelson interferometer. LAMOST with large aperture and large field of view is equipped with 16 multi-object low resolution fiber spectrographs. And these spectrographs are capable to work in medium resolution mode (R=5{K}˜10{K}). LAMOST will be one of the most powerful exoplanet detecting systems over the world by introducing EDI technique. The EDI technique is a new technique for developing astronomical instrumentation in China. The operating theory of EDI was generally verified by a feasibility experiment done in 2009. And then a multi-object exoplanet survey system based on LAMOST spectrograph was proposed. According to this project, three important tasks have been done as follows: Firstly, a simulation of EDI operating theory contains the stellar spectrum model, interferometer transmission model, spectrograph mediation model and RV solution model. In order to meet the practical situation, two detecting modes, temporal and spatial phase-stepping methods, are separately simulated. The interference spectrum is analyzed with Fourier transform algorithm and a higher resolution conventional spectrum is resolved. Secondly, an EDI prototype is composed of a multi-object interferometer prototype and the LAMOST spectrograph. Some ideas are used in the design to reduce the effect of central obscuration, for example, modular structure and external/internal adjusting frames. Another feasibility experiment was done at Xinglong Station in 2010. A related spectrum reduction program and the instrumental stability were tested by obtaining some multi-object interference spectrum. Thirdly, studying the parameter optimization of fixed-delay Michelson interferometer is helpful to increase its inner thermal stability and reduce the external environmental requirement. Referring to Wide-angle Michelson Interferometer successfully used in Upper Atmospheric Wind field, a glass pair selecting scheme is given. By choosing a suitable glass pair of interference arms, the RV error can be stable as several hundred m\\cdots^{-1}\\cdot{dg}C^{-1}. Therefore, this work is helpful to deeply study EDI technique and speed up the development of multi-object exoplanet survey system. LAMOST will make a greater contribution to astronomy when the combination between its spectrographs and EDI technique comes true.

VizieR Online Data Catalog: CONCH-SHELL catalog of nearby M dwarfs (Gaidos+, 2014)

NASA Astrophysics Data System (ADS)

Gaidos, E.; Mann, A. W.; Lepine, S.; Buccino, A.; James, D.; Ansdell, M.; Petrucci, R.; Mauas, P.; Hilton, E. J.

2015-04-01

Lepinet et al. 2011 (J/AJ/142/138) selected candidate M dwarfs as stars that were (i) bright (J<10), (ii) red (V-J>2.7), (iii) had absolute magnitudes or reduced proper motions, proxies for absolute magnitudes, consistent with the main sequence and (iv) infrared Two Micron All-Sky Survey (2MASS; Skrutskie et al. 2006, Cat. II/246) JHKS colours that are consistent with M dwarfs. In this work, we constructed a revised catalogue of J<9 M dwarfs using modified criteria and new photometry from APASS. Spectroscopic observations with a resolution if ~1000 were achieved at the SuperNova Integral Field Spectrograph (SNIFS) on the University of Hawaii 2.2m telescope on Maunakea, Hawaii, the Mark III spectrograph and Boller & Chivens CCDS spectrograph (CCDS) on the 1.3m McGraw-Hill telescope at the MDM Observatory on Kitt Peak, Arizona, the REOSC spectrograph on the 2.15m Jorge Sahade telescope at the Complejo Astronomico El Leoncito Observatory (CASLEO), Argentina, and the RC spectrograph on the 1.9m Radcliffe telescope at the South African Astronomical Observatory. We obtained a total of 3071 spectra of 2583 stars or 86% of the catalog over the span 2002-2014 of more than 11 years. 425 stars were observed twice, 14 stars were observed thrice, and 6 stars had more than four observations. (2 data files).

First light results from the HERMES spectrograph at the AAT

NASA Astrophysics Data System (ADS)

Sheinis, Andrew I.

2016-08-01

The High Efficiency and Resolution Multi Element Spectrograph, HERMES is a facility-class optical spectrograph for the AAT. It is designed primarily for Galactic Archeology, the first major attempt to create a detailed understanding of galaxy formation and evolution by studying the history of our own galaxy, the Milky Way. The goal of the Galactic Archeology with Hermes (GALAH) survey is to reconstruct the mass assembly history of the Milky Way, through a detailed spatially tagged abundance study of one million stars. The spectrograph is based at the Anglo Australian Telescope (AAT) and is fed by the existing 2dF robotic fiber positioning system. The spectrograph uses VPH-gratings to achieve a spectral resolving power of 28,000 in standard mode and also provides a high-resolution mode ranging between 40,000 to 50,000 using a slit mask. The GALAH survey requires a SNR greater than 100 for a star brightness of V=14. The total spectral coverage of the four channels is about 100nm between 370 and 1000nm for up to 392 simultaneous targets within the 2- degree field of view. Hermes was commissioned in late 2013, with the GALAH Pilot starting in parallel with the commissioning. The GALAH survey started in early 2014 is currently about 33% complete. We present a description of the motivating science; an overview the instrument; and a status report on GALAH Survey.

Technical aspects of the Space Telescope Imaging Spectrograph Repair (STIS-R)

NASA Astrophysics Data System (ADS)

Rinehart, S. A.; Domber, J.; Faulkner, T.; Gull, T.; Kimble, R.; Klappenberger, M.; Leckrone, D.; Niedner, M.; Proffitt, C.; Smith, H.; Woodgate, B.

2008-07-01

In August 2004, the Hubble Space Telescope (HST) Space Telescope Imaging Spectrograph (STIS) ceased operation due to a failure of the 5V mechanism power converter in the Side 2 Low Voltage Power Supply (LVPS2). The failure precluded movement of any STIS mechanism and, because of the earlier (2001) loss of the Side 1 electronics chain, left the instrument shuttered and in safe mode after 7.5 years of science operations. A team was assembled to analyze the fault and to determine if STIS repair (STIS-R) was feasible. The team conclusively pinpointed the Side 2 failure to the 5V mechanism converter, and began studying EVA techniques for opening STIS during Servicing Mission 4 (SM4) to replace the failed LVPS2 board. The restoration of STIS functionality via surgical repair by astronauts has by now reached a mature and final design state, and will, along with a similar repair procedure for the Advanced Camera for Surveys (ACS), represent a first for Hubble servicing. STIS-R will restore full scientific functionality of the spectrograph on Side 2, while Side 1 will remain inoperative. Because of the high degree of complementarity between STIS and the new Cosmic Origins Spectrograph (COS, to be installed during SM4)), successful repair of the older spectrograph is an important scientific objective. In this presentation, we focus on the technical aspects associated with STIS-R.

Physical Regulation of the Self-Assembly of Tobacco Mosaic Virus Coat Protein

PubMed Central

Kegel, Willem K.; van der Schoot, Paul

2006-01-01

We present a statistical mechanical model based on the principle of mass action that explains the main features of the in vitro aggregation behavior of the coat protein of tobacco mosaic virus (TMV). By comparing our model to experimentally obtained stability diagrams, titration experiments, and calorimetric data, we pin down three competing factors that regulate the transitions between the different kinds of aggregated state of the coat protein. These are hydrophobic interactions, electrostatic interactions, and the formation of so-called “Caspar” carboxylate pairs. We suggest that these factors could be universal and relevant to a large class of virus coat proteins. PMID:16731551

Poxvirus viability and signatures in historical relics.

PubMed

McCollum, Andrea M; Li, Yu; Wilkins, Kimberly; Karem, Kevin L; Davidson, Whitni B; Paddock, Christopher D; Reynolds, Mary G; Damon, Inger K

2014-02-01

Although it has been >30 years since the eradication of smallpox, the unearthing of well-preserved tissue material in which the virus may reside has called into question the viability of variola virus decades or centuries after its original occurrence. Experimental data to address the long-term stability and viability of the virus are limited. There are several instances of well-preserved corpses and tissues that have been examined for poxvirus viability and viral DNA. These historical specimens cause concern for potential exposures, and each situation should be approached cautiously and independently with the available information. Nevertheless, these specimens provide information on the history of a major disease and vaccination against it.

Daclatasvir

MedlinePlus

... Solvadi]) to treat a certain type of chronic hepatitis C (an ongoing viral infection that damages the liver). ... is in a class of antiviral medications called hepatitis C virus (HCV) NS5A inhibitors. It works by stopping ...

Sofosbuvir and Velpatasvir

MedlinePlus

... to treat chronic hepatitis C (an ongoing viral infection that damages the liver). Sofosbuvir is in a class of antiviral medications called nucleotide hepatitis C virus (HCV) NS5B polymerase inhibitors. Velpatasvir is in a ...

Genital Herpes

MedlinePlus

Genital herpes is a sexually transmitted disease (STD) caused by a herpes simplex virus (HSV). It can cause sores on ... also infect their babies during childbirth. Symptoms of herpes are called outbreaks. You usually get sores near ...

Rhinovirus Infections

MedlinePlus

... doctor. These over-the-counter medicines do not kill the virus and, in most circumstances, do not help with the symptoms. When to Call Your Pediatrician If your infant is 3 months or younger and develops cold ...

GIRAFFE Reaches towards the Stars

NASA Astrophysics Data System (ADS)

2002-07-01

"First Light" of New Powerful Spectrograph at the VLT Summary The first observations of stellar spectra have just been performed with the new GIRAFFE multi-object spectrograph on the ESO Very Large Telescope (VLT) at the Paranal Observatory in Chile. This milestone event was achieved in the early morning of July 3, 2002. It signifies another important step towards the full implementation of the extremely powerful Fibre Large Array Multi-Element Spectrograph (FLAMES) , one of the main instruments for the ESO VLT. This project is co-ordinated by ESO and incorporates many complex components that have been constructed at various research institutions in Europe and Australia. The GIRAFFE spectrograph provides unique possibilities for detailed observations of the properties of individual stars located in our Milky Way galaxy ( PR 16b/02 ) as well as in other galaxies of the Local Group. PR Photo 16a/02 : A series of stellar spectra recorded by GIRAFFE during "First Light" . PR Photo 16b/02 : Details of some of these stellar spectra . FLAMES and GIRAFFE ESO PR Photo 16a/02 ESO PR Photo 16a/02 [Preview - JPEG: 756 x 400 pix - 363k] [Normal - JPEG: 1511 x 800 pix - 1.2M] ESO PR Photo 16b/02 ESO PR Photo 16b/02 [Preview - JPEG: 461 x 400 pix - 196k] [Normal - JPEG: 921 x 800 pix - 606k] Caption : PR Photo 16a/02 : "First Light" test observation with the GIRAFFE spectrograph of about 50 high-quality spectra (10 min exposure at spectral resolution 7,000) of stars in the Milky Way disk, in the early morning of July 3, 2002. The stars have magnitudes of 12 - 16 and are all of solar type. The photo shows part of the image recorded with a 2000 x 4000 pixel CCD detector at the focal plane of the spectrograph. Each stellar spectrum is seen as one vertical line - some of the absorption lines can be seen as dark horizontal features. PR Photo 16b/02 shows a small part of this image. The three strong absorption lines that are visible as horizontal, dark lines in the lower part of the photo are due to the common element Magnesium in the atmospheres of these stars (the Mg b triplet at wavelength 517 nm). The different intensity of the spectra is due to the different brightness of the stars. The multi-object GIRAFFE spectrograph , now installed on the 8.2-m KUEYEN Unit Telescope of ESO's Very Large Telescope (VLT) at the Paranal Observatory (Chile), achieved "First Light" in the early morning hours of July 3, 2002. This complex instrument allows to obtain high-quality spectra of a large variety of celestial objects, from individual stars in the Milky Way and other nearby galaxies, to very distant galaxies. It functions by means of multiple optical fibres that guide the light from the telescope's focal plane into the entry slit of the spectrograph. Here the light is dispersed into its different colours. Anticipating already at this early moment the future, highly effective operation of the new facility, the first data were immediately prepared for astronomical interpretation ("reduced") by means of a dedicated software package ("pipeline"). GIRAFFE and these fibres are an integral part of the advanced Fibre Large Array Multi-Element Spectrograph (FLAMES) facility which also includes the OzPoz positioner and an optical field corrector . It is the outcome of a collaboration between ESO, Observatoire de Paris-Meudon Observatoire de Genève-Lausanne and the Anglo Australian Observatory (AAO) . More details are available in ESO PR 01/02. The principle of this instrument involves the positioning in the telescope's focal plane of a large number of optical fibres. This is done in such a way that each of them guides the light from one particular celestial object towards the spectrograph that records the spectra of all these objects simultaneously. The size of the available field-of-view is no less than about 25 arcmin across, i.e. almost as large as the full moon. The individual fibres are moved and positioned "on the objects" in the field by means of the OzPoz positioner. Different observational modes FLAMES has several different modes of operation. Two of these are of the simple "multi-object" type: each fibre collects the light from one star or galaxy - up to 132 objects can be observed simultaneously, cf. PR 16a/02 . In this respect, GIRAFFE provides absolutely unique possibilities for detailed observations of the properties (age, chemical composition, rotation and space velocity) of individual stars located in the main disk, central bulge or halo of our Milky Way galaxy ( PR 16b/02 ), and also of stars in other galaxies of the Local Group. Another observational mode is known as "3-D spectroscopy" or "integrated field". This consists of obtaining simultaneous spectra of smaller areas of extended objects like galaxies or nebulae. For this, 15 deployable fibre bundles, the so-called Integral Field Units (IFUs) , cf. ESO PR 01/02 , are used. Each IFU is a microscopic, state-of-the-art two-dimensional lens array with an aperture of 3 x 2 arcsec 2 on the sky. It is like an insect's eye, with twenty micro-lenses coupled with optical fibres leading the light recorded at each point in the field to the entry slit of the spectrograph. Unique research opportunities opening The FLAMES facility, once in full operation after further testing and fine-tuning later this year, will enormously increase the possibilities to study stellar physics and the evolution of galaxies , two of the cornerstones in our understanding of the structure and evolution of the Universe. With the great light-gathering capacity of the VLT, FLAMES will be able to gather very comprehensive information about even rather faint objects, enabling the astronomers to study them in a degree of detail so far reserved for brighter, nearby stars. The quality of the first spectra from GIRAFFE, although far from exploiting the ultimate potential of the new facility, fully confirm these expectations. Note [1]: This is a joint Press Release of ESO and the Observatoire de Paris.

Sensitivity of Small RNA-Based Detection of Plant Viruses.

PubMed

Santala, Johanna; Valkonen, Jari P T

2018-01-01

Plants recognize unrelated viruses by the antiviral defense system called RNA interference (RNAi). RNAi processes double-stranded viral RNA into small RNAs (sRNAs) of 21-24 nucleotides, the reassembly of which into longer strands in silico allows virus identification by comparison with the sequences available in databases. The aim of this study was to compare the virus detection sensitivity of sRNA-based virus diagnosis with the established virus species-specific polymerase chain reaction (PCR) approach. Viruses propagated in tobacco plants included three engineered, infectious clones of Potato virus A (PVA), each carrying a different marker gene, and an infectious clone of Potato virus Y (PVY). Total RNA (containing sRNA) was isolated and subjected to reverse-transcription real-time PCR (RT-RT-PCR) and sRNA deep-sequencing at different concentrations. RNA extracted from various crop plants was included in the reactions to normalize RNA concentrations. Targeted detection of selected viruses showed a similar threshold for the sRNA and reverse-transcription quantitative PCR (RT-qPCR) analyses. The detection limit for PVY and PVA by RT-qPCR in this study was 3 and 1.5 fg of viral RNA, respectively, in 50 ng of total RNA per PCR reaction. When knowledge was available about the viruses likely present in the samples, sRNA-based virus detection was 10 times more sensitive than RT-RT-PCR. The advantage of sRNA analysis is the detection of all tested viruses without the need for virus-specific primers or probes.

Influence of occult hepatitis B virus infection in chronic hepatitis C outcomes

PubMed Central

Fernandez-Rodriguez, Conrado M; Gutierrez, Maria Luisa; Lledó, José Luis; Casas, Maria Luisa

2011-01-01

Persistence of hepatitis B virus-DNA in the sera, peripheral blood mononuclear cells or in the liver of hepatitis B surface antigen (HBsAg)-negative patients with or without serological markers of previous exposure (antibodies to HBsAg and/or to HB-core antigen) defines the entity called occult hepatitis B infection (OBI). Co-infection with hepatitis B and hepatitis C viruses is frequent in highly endemic areas. While this co-infection increases the risk of liver disease progression, development of cirrhosis and hepatocellular carcinoma and also increases the rate of therapeutic failure to interferon-based treatments than either virus alone, a potentially negative effect of OBI on clinical outcomes and of therapeutic response to current antiviral regimes of patients with chronic hepatitis C remains inconclusive. PMID:21472121

A mathematical model of transmission of rice tungro disease by Nephotettix Virescens

NASA Astrophysics Data System (ADS)

Blas, Nikki T.; Addawe, Joel M.; David, Guido

2016-11-01

One of the major threats in rice agriculture is the Tungro virus, which is transmitted semi-persistently to rice plants via green rice leafhoppers called Nephotettix Virescens. Tungro is polycyclic and complex disease of rice associated by dual infection with Rice Tungro Bacilliform Virus (RTBV) and Rice Tungro Spherical Virus (RTSV). Interaction of the two viruses results in the degeneration of the host. In this paper, we used a plant-vector system of ordinary differential equations to model the spread of the disease in a model rice field. Parameter values were obtained from studies on the entomology of Nephotettix Virescens and infection rates of RTSV and RTBV. The system was analyzed for equilibrium solutions, and solved numerically for susceptible rice varieties (Taichung Native 1).

The Host Cell Receptors for Measles Virus and Their Interaction with the Viral Hemagglutinin (H) Protein

PubMed Central

Lin, Liang-Tzung; Richardson, Christopher D.

2016-01-01

The hemagglutinin (H) protein of measles virus (MeV) interacts with a cellular receptor which constitutes the initial stage of infection. Binding of H to this host cell receptor subsequently triggers the F protein to activate fusion between virus and host plasma membranes. The search for MeV receptors began with vaccine/laboratory virus strains and evolved to more relevant receptors used by wild-type MeV. Vaccine or laboratory strains of measles virus have been adapted to grow in common cell lines such as Vero and HeLa cells, and were found to use membrane cofactor protein (CD46) as a receptor. CD46 is a regulator that normally prevents cells from complement-mediated self-destruction, and is found on the surface of all human cells, with the exception of erythrocytes. Mutations in the H protein, which occur during adaptation and allow the virus to use CD46 as a receptor, have been identified. Wild-type isolates of measles virus cannot use the CD46 receptor. However, both vaccine/laboratory and wild-type strains can use an immune cell receptor called signaling lymphocyte activation molecule family member 1 (SLAMF1; also called CD150) and a recently discovered epithelial receptor known as Nectin-4. SLAMF1 is found on activated B, T, dendritic, and monocyte cells, and is the initial target for infections by measles virus. Nectin-4 is an adherens junction protein found at the basal surfaces of many polarized epithelial cells, including those of the airways. It is also over-expressed on the apical and basal surfaces of many adenocarcinomas, and is a cancer marker for metastasis and tumor survival. Nectin-4 is a secondary exit receptor which allows measles virus to replicate and amplify in the airways, where the virus is expelled from the body in aerosol droplets. The amino acid residues of H protein that are involved in binding to each of the receptors have been identified through X-ray crystallography and site-specific mutagenesis. Recombinant measles “blind” to each of these receptors have been constructed, allowing the virus to selectively infect receptor specific cell lines. Finally, the observations that SLAMF1 is found on lymphomas and that Nectin-4 is expressed on the cell surfaces of many adenocarcinomas highlight the potential of measles virus for oncolytic therapy. Although CD46 is also upregulated on many tumors, it is less useful as a target for cancer therapy, since normal human cells express this protein on their surfaces. PMID:27657109

The Host Cell Receptors for Measles Virus and Their Interaction with the Viral Hemagglutinin (H) Protein.

PubMed

Lin, Liang-Tzung; Richardson, Christopher D

2016-09-20

The hemagglutinin (H) protein of measles virus (MeV) interacts with a cellular receptor which constitutes the initial stage of infection. Binding of H to this host cell receptor subsequently triggers the F protein to activate fusion between virus and host plasma membranes. The search for MeV receptors began with vaccine/laboratory virus strains and evolved to more relevant receptors used by wild-type MeV. Vaccine or laboratory strains of measles virus have been adapted to grow in common cell lines such as Vero and HeLa cells, and were found to use membrane cofactor protein (CD46) as a receptor. CD46 is a regulator that normally prevents cells from complement-mediated self-destruction, and is found on the surface of all human cells, with the exception of erythrocytes. Mutations in the H protein, which occur during adaptation and allow the virus to use CD46 as a receptor, have been identified. Wild-type isolates of measles virus cannot use the CD46 receptor. However, both vaccine/laboratory and wild-type strains can use an immune cell receptor called signaling lymphocyte activation molecule family member 1 (SLAMF1; also called CD150) and a recently discovered epithelial receptor known as Nectin-4. SLAMF1 is found on activated B, T, dendritic, and monocyte cells, and is the initial target for infections by measles virus. Nectin-4 is an adherens junction protein found at the basal surfaces of many polarized epithelial cells, including those of the airways. It is also over-expressed on the apical and basal surfaces of many adenocarcinomas, and is a cancer marker for metastasis and tumor survival. Nectin-4 is a secondary exit receptor which allows measles virus to replicate and amplify in the airways, where the virus is expelled from the body in aerosol droplets. The amino acid residues of H protein that are involved in binding to each of the receptors have been identified through X-ray crystallography and site-specific mutagenesis. Recombinant measles "blind" to each of these receptors have been constructed, allowing the virus to selectively infect receptor specific cell lines. Finally, the observations that SLAMF1 is found on lymphomas and that Nectin-4 is expressed on the cell surfaces of many adenocarcinomas highlight the potential of measles virus for oncolytic therapy. Although CD46 is also upregulated on many tumors, it is less useful as a target for cancer therapy, since normal human cells express this protein on their surfaces.

Chickenpox

MedlinePlus

... Better? When Should I Call the Doctor? Print What Is Chickenpox? Chickenpox is a viral infection that causes ... weak immune systems or skin disorders like eczema . What Causes Chickenpox? Chickenpox is caused by the varicella-zoster virus (VZV). This ...

Genetics Home Reference: MDA5 deficiency

MedlinePlus

... the protein recognizes a molecule called double-stranded RNA (a chemical cousin of DNA), which certain viruses, ... When the MDA5 protein recognizes pieces of viral RNA inside the cell, it helps turn on the ...

Hepatitis C: Information on Testing and Diagnosis

MedlinePlus

HEPATITIS C Information on Testing & Diagnosis What is Hepatitis C? Hepatitis C is a serious liver disease that results from infection with the Hepatitis C virus. Hepatitis C has been called a silent ...

Expression of a non-coding RNA in ectromelia virus is required for normal plaque formation.

PubMed

Esteban, David J; Upton, Chris; Bartow-McKenney, Casey; Buller, R Mark L; Chen, Nanhai G; Schriewer, Jill; Lefkowitz, Elliot J; Wang, Chunlin

2014-02-01

Poxviruses are dsDNA viruses with large genomes. Many genes in the genome remain uncharacterized, and recent studies have demonstrated that the poxvirus transcriptome includes numerous so-called anomalous transcripts not associated with open reading frames. Here, we characterize the expression and role of an apparently non-coding RNA in orthopoxviruses, which we call viral hairpin RNA (vhRNA). Using a bioinformatics approach, we predicted expression of a transcript not associated with an open reading frame that is likely to form a stem-loop structure due to the presence of a 21 nt palindromic sequence. Expression of the transcript as early as 2 h post-infection was confirmed by northern blot and analysis of publicly available vaccinia virus infected cell transcriptomes. The transcription start site was determined by RACE PCE and transcriptome analysis, and early and late promoter sequences were identified. Finally, to test the function of the transcript we generated an ectromelia virus knockout, which failed to form plaques in cell culture. The important role of the transcript in viral replication was further demonstrated using siRNA. Although the function of the transcript remains unknown, our work contributes to evidence of an increasingly complex poxvirus transcriptome, suggesting that transcripts such as vhRNA not associated with an annotated open reading frame can play an important role in viral replication.

Diversity of Dicotyledenous-Infecting Geminiviruses and Their Associated DNA Molecules in Southern Africa, Including the South-West Indian Ocean Islands

PubMed Central

Rey, Marie E. C.; Ndunguru, Joseph; Berrie, Leigh C.; Paximadis, Maria; Berry, Shaun; Cossa, Nurbibi; Nuaila, Valter N.; Mabasa, Ken G.; Abraham, Natasha; Rybicki, Edward P.; Martin, Darren; Pietersen, Gerhard; Esterhuizen, Lindy L.

2012-01-01

The family Geminiviridae comprises a group of plant-infecting circular ssDNA viruses that severely constrain agricultural production throughout the temperate regions of the world, and are a particularly serious threat to food security in sub-Saharan Africa. While geminiviruses exhibit considerable diversity in terms of their nucleotide sequences, genome structures, host ranges and insect vectors, the best characterised and economically most important of these viruses are those in the genus Begomovirus. Whereas begomoviruses are generally considered to be either monopartite (one ssDNA component) or bipartite (two circular ssDNA components called DNA-A and DNA-B), many apparently monopartite begomoviruses are associated with additional subviral ssDNA satellite components, called alpha- (DNA-αs) or betasatellites (DNA-βs). Additionally, subgenomic molecules, also known as defective interfering (DIs) DNAs that are usually derived from the parent helper virus through deletions of parts of its genome, are also associated with bipartite and monopartite begomoviruses. The past three decades have witnessed the emergence and diversification of various new begomoviral species and associated DI DNAs, in southern Africa, East Africa, and proximal Indian Ocean islands, which today threaten important vegetable and commercial crops such as, tobacco, cassava, tomato, sweet potato, and beans. This review aims to describe what is known about these viruses and their impacts on sustainable production in this sensitive region of the world. PMID:23170182

Buying time-the immune system determinants of the incubation period to respiratory viruses.

PubMed

Hermesh, Tamar; Moltedo, Bruno; López, Carolina B; Moran, Thomas M

2010-11-01

Respiratory viruses cause disease in humans characterized by an abrupt onset of symptoms. Studies in humans and animal models have shown that symptoms are not immediate and appear days or even weeks after infection. Since the initial symptoms are a manifestation of virus recognition by elements of the innate immune response, early virus replication must go largely undetected. The interval between infection and the emergence of symptoms is called the incubation period and is widely used as a clinical score. While incubation periods have been described for many virus infections the underlying mechanism for this asymptomatic phase has not been comprehensively documented. Here we review studies of the interaction between human pathogenic respiratory RNA viruses and the host with a particular emphasis on the mechanisms used by viruses to inhibit immunity. We discuss the concept of the "stealth phase", defined as the time between infection and the earliest detectable inflammatory response. We propose that the "stealth phase" phenomenon is primarily responsible for the suppression of symptoms during the incubation period and results from viral antagonism that inhibits major pathways of the innate immune system allowing an extended time of unhindered virus replication.

Auto-Focused on Details in Yellowjacket on Mars

NASA Image and Video Library

2015-05-22

This image from the Chemistry and Camera (ChemCam) instrument on NASA's Curiosity Mars rover shows detailed texture of a rock target called "Yellowjacket" on Mars' Mount Sharp. This was the first rock target for ChemCam after checkout of restored capability for autonomous focusing. The image covers a patch of rock surface about 2.5 inches (6 centimeters) across. It was taken on May 15, 2015, during the mission's 986th Martian day, or sol. ChemCam's Remote Micro-Imager camera, on top of Curiosity's mast, captured the image from a distance of about 8 feet (2.4 meters). ChemCam also hit the target with laser pulses and recorded spectrographic information from the resulting flashes to reveal the chemical composition. Yellowjacket, located near an area called "Logan Pass" on lower Mount Sharp, is a layered sedimentary rock. The laser analysis yielded a composition very close to that of Mars soil and unlike the lakebed sedimentary compositions observed at lower elevations earlier in the mission. The soil-like composition may indicate that the rock formed from sediment transported by wind, rather than by water. http://photojournal.jpl.nasa.gov/catalog/PIA19661

Small Business Innovations

NASA Technical Reports Server (NTRS)

1996-01-01

Under a Small Business Innovation Research (SBIR) contract to Kennedy Space Center, EIC Laboratories invented a Raman Spectrograph with fiber optic sampling for space applications such as sensing hazardous fuel vapors and making on-board rapid analyses of chemicals and minerals. Raman spectroscopy is a laser-based measurement technique that provides through a unique vibrational spectrum a molecular 'fingerprint,' and can function in aqueous environments. EIC combined optical fiber technology with Raman methods to develop sensors that can be operated at a distance from the spectrographic analysis instruments and the laser excitation source. EIC refined and commercialized the technology to create the Fiber Optic Raman Spectrograph and the RamanProbe. Commercial applications range from process control to monitoring hazardous materials.

Spectrum of Th-Ar Hollow Cathode Lamps

National Institute of Standards and Technology Data Gateway

SRD 161 NIST Spectrum of Th-Ar Hollow Cathode Lamps (Web, free access)   This atlas presents observations of the infra-red (IR) spectrum of a low current Th-Ar hollow cathode lamp with the 2-m Fourier transform spectrometer (FTS) at NIST. These observations establish more than 2400 lines that are suitable for use as wavelength standards in the range 691 nm to 5804 nm. The observations were made in collaboration with the European Southern Observatory (ESO), in order to provide calibration reference data for new high-resolution Echelle spectrographs, such as the Cryogenic High-Resolution IR Echelle Spectrograph ([CRIRES]), ESO's new IR spectrograph at the Very Large Telescope in Chile.

Through the Lens of History: The Unusual Circumstances Leading to the Acquisition of the Lowell Spectrograph

NASA Astrophysics Data System (ADS)

Schindler, K. S.

2013-04-01

In 1900 Lowell Observatory assistant Andrew Douglass advised his employer Percival Lowell to purchase a state-of-the-art spectrograph from instrument maker John Brashear of Pennsylvania. Lowell agreed with Douglass's suggestion, realizing that such an instrument was critical for the Observatory staff's research. However, the purchase also fulfilled a little-known obligation between Percival Lowell and Brashear that dated back to an accident occurring in 1895. If not for this unusual incident that led to the purchase of the spectrograph, the future of Lowell Observatory and, on a larger scale, unmasking of the nature of the expanding universe, would likely have played out much differently.

Progress along the E-ELT instrumentation roadmap

NASA Astrophysics Data System (ADS)

Ramsay, Suzanne; Casali, Mark; Cirasuolo, Michele; Egner, Sebastian; Gray, Peter; Gonzáles Herrera, Juan Carlos; Hammersley, Peter; Haupt, Christoph; Ives, Derek; Jochum, Lieselotte; Kasper, Markus; Kerber, Florian; Lewis, Steffan; Mainieri, Vincenzo; Manescau, Antonio; Marchetti, Enrico; Oberti, Sylvain; Padovani, Paolo; Schmid, Christian; Schimpelsberger, Johannes; Siebenmorgen, Ralf; Szecsenyi, Orsolya; Tamai, Roberto; Vernet, Joël.

2016-08-01

A suite of seven instruments and associated AO systems have been planned as the "E-ELT Instrumentation Roadmap". Following the E-ELT project approval in December 2014, rapid progress has been made in organising and signing the agreements for construction with European universities and institutes. Three instruments (HARMONI, MICADO and METIS) and one MCAO module (MAORY) have now been approved for construction. In addition, Phase-A studies have begun for the next two instruments - a multi-object spectrograph and high-resolution spectrograph. Technology development is also ongoing in preparation for the final instrument in the roadmap, the planetary camera and spectrograph. We present a summary of the status and capabilities of this first set of instruments for the E-ELT.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Suvorov, Alexey; Cai, Yong Q.

A concept of an inelastic x-ray scattering (IXS) spectrograph with an imaging analyzer was proposed recently and discussed in a number of publications (see e.g. Ref.1). The imaging analyzer as proposed combines x-ray lenses with highly dispersive crystal optics. It allows conversion of the x-ray energy spectrum into a spatial image with very high energy resolution. However, the presented theoretical analysis of the spectrograph did not take into account details of the scattered radiation source, i.e. sample, and its impact on the spectrograph performance. Using numerical simulations we investigated the influence of the finite sample thickness, the scattering angle andmore » the incident energy detuning on the analyzer image and the ultimate resolution.« less

The Radio JOVE Project - An Inexpensive Introduction to Radio Astronomy

NASA Astrophysics Data System (ADS)

Thieman, J. R.; Higgins, C.

2004-12-01

The Radio JOVE project began over six years ago as an education-centered program to inspire secondary school students' interest in space science through hands-on radio astronomy. The project was begun on small grants from the Goddard Space Flight Center Director's Discretionary Fund, the Initiative to Develop Education through Astronomy and Space Science (IDEAS) program, and the American Astronomical Society. Students build a radio receiver and antenna kit capable of receiving Jovian, solar, and galactic emissions at a frequency of 20.1 MHz. More than 600 of these kits have been distributed to students and interested observers (ages 10 through adult) in over 30 countries. For those who are not comfortable building their own kit, the Radio JOVE project has made it possible to monitor real-time data and streaming audio online from professional radio telescopes in Florida (http://jupiter.kochi-ct.jp) and Hawaii http://jupiter.wcc.hawaii.edu/newradiojove/main.html). Freely downloadable software called Radio-Skypipe (http://radiosky.com) emulates a chart recorder to monitor ones own radio telescope or the telescopes of other observers worldwide who send out their data over the Internet. Inexpensive spectrographs have been developed for the professional telescopes in Hawaii and Florida and freely downloadable spectrograph display software is available to receive this research-quality data. We believe the amateur network data to be of value to the research community and would like to have students more directly connected to ongoing research projects to enhance their interest in participating. Results of the project and plans for the future will be highlighted.

Neuronal networks and self-organizing maps: new computer techniques in the acoustic evaluation of the infant cry.

PubMed

Schönweiler, R; Kaese, S; Möller, S; Rinscheid, A; Ptok, M

1996-12-05

Neuronal networks are computer-based techniques for the evaluation and control of complex information systems and processes. So far, they have been used in engineering, telecommunications, artificial speech and speech recognition. A new approach in neuronal network is the self-organizing map (Kohonen map). In the phase of 'learning', the map adapts to the patterns of the primary signals. If, the phase of 'using the map', the input signal hits the field of the primary signals, it resembles them and is called a 'winner'. In our study, we recorded the cries of newborns and young infants using digital audio tape (DAT) and a high quality microphone. The cries were elicited by tactile stimuli wearing headphones. In 27 cases, delayed auditory feedback was presented to the children using a headphone and an additional three-head tape-recorder. Spectrographic characteristics of the cries were classified by 20-step bark spectra and then applied to the neuronal networks. It was possible to recognize similarities of different cries of the same children as well as interindividual differences, which are also audible to experienced listeners. Differences were obvious in profound hearing loss. We know much about the cries of both healthy and sick infants, but a reliable investigation regimen, which can be used for clinical routine purposes, has yet not been developed. If, in the future, it becomes possible to classify spectrographic characteristics automatically, even if they are not audible, neuronal networks may be helpful in the early diagnosis of infant diseases.

An optimal method for producing low-stress fibre optic cables for astronomy

NASA Astrophysics Data System (ADS)

Murray, Graham; Tamura, Naoyuki; Takato, Naruhisa; Ekpenyong, Paul; Jenkins, Daniel; Leeson, Kim; Trezise, Shaun; Butterley, Timothy; Gunn, James; Ferreira, Decio; Oliveira, Ligia; Sodre, Laerte

2017-09-01

An increasing number of astronomical spectrographs employ optical fibres to collect and deliver light. For integral-field and high multiplex multi-object survey instruments, fibres offer unique flexibility in instrument design by enabling spectrographs to be located remotely from the telescope focal plane where the fibre inputs are deployed. Photon-starved astronomical observations demand optimum efficiency from the fibre system. In addition to intrinsic absorption loss in optical fibres, another loss mechanism, so-called focal ratio degradation (FRD) must be considered. A fundamental cause of FRD is stress, therefore low stress fibre cables that impart minimum FRD are essential. The FMOS fibre instrument for Subaru Telescope employed a highly effective cable solution developed at Durham University. The method has been applied again for the PFS project, this time in collaboration with a company, PPC Broadband Ltd. The process, planetary stranding, is adapted from the manufacture of large fibre-count, large diameter marine telecommunications cables. Fibre bundles describe helical paths through the cable, incorporating additional fibre per unit length. As a consequence fibre stress from tension and bend-induced `race-tracking' is minimised. In this paper stranding principles are explained, covering the fundamentals of stranded cable design. The authors describe the evolution of the stranding production line and the numerous steps in the manufacture of the PFS prototype cable. The results of optical verification tests are presented for each stage of cable production, confirming that the PFS prototype performs exceptionally well. The paper concludes with an outline of future on-telescope test plans.

GIARPS@TNG: GIANO-B and HARPS-N together for a wider wavelength range spectroscopy

NASA Astrophysics Data System (ADS)

Claudi, R.; Benatti, S.; Carleo, I.; Ghedina, A.; Guerra, J.; Micela, G.; Molinari, E.; Oliva, E.; Rainer, M.; Tozzi, A.; Baffa, C.; Baruffolo, A.; Buchschacher, N.; Cecconi, M.; Cosentino, R.; Fantinel, D.; Fini, L.; Ghinassi, F.; Giani, E.; Gonzalez, E.; Gonzalez, M.; Gratton, R.; Harutyunyan, A.; Hernandez, N.; Lodi, M.; Malavolta, L.; Maldonado, J.; Origlia, L.; Sanna, N.; Sanjuan, J.; Scuderi, S.; Seemann, U.; Sozzetti, A.; Perez Ventura, H.; Hernandez Diaz, M.; Galli, A.; Gonzalez, C.; Riverol, L.; Riverol, C.

2017-08-01

Since 2012, thanks to the installation of the high-resolution echelle spectrograph in the optical range HARPS-N, the Italian telescope TNG (La Palma) became one of the key facilities for the study of the extrasolar planets. In 2014 TNG also offered GIANO to the scientific community, providing a near-infrared (NIR) cross-dispersed echelle spectroscopy covering 0.97-2.45μm at a resolution of 50000. GIANO, although designed for direct light-feed from the telescope at the Nasmyth-B focus, was provisionally mounted on the rotating building and connected via fibers to only available interface at the Nasmyth-A focal plane. The synergy between these two instruments is particularly appealing for a wide range of science cases, especially for the search of exoplanets around young and active stars and the characterisation of their atmosphere. Through the funding scheme "WOW" (a Way to Others Worlds), the Italian National Institute for Astrophysics (INAF) proposed to position GIANO at the focal station for which it was originally designed and the simultaneous use of these spectrographs with the aim to achieve high-resolution spectroscopy in a wide wavelength range (0.383-2.45μm) obtained in a single exposure, giving rise to the project called GIARPS (GIANO-B & HARPS-N). Because of its characteristics, GIARPS can be considered the first and unique worldwide instrument providing not only high resolution in a large wavelength band, but also a high-precision radial velocity measurement both in the visible and in the NIR arm, since in the next future GIANO-B will be equipped with gas absorption cells.

The CHARIS IFS for high contrast imaging at Subaru

NASA Technical Reports Server (NTRS)

Groff, Tyler D.; Kasdin, N. Jeremy; Limbach, Mary Anne; Galvin, Michael; Carr, Michael A.; Knapp, Gillian; Brandt, Timothy; Loomis, Craig; Jarosik, Norman; Mede, Kyle;

Nanobodies®: new ammunition to battle viruses.

PubMed

Vanlandschoot, Peter; Stortelers, Catelijne; Beirnaert, Els; Ibañez, Lorena Itatí; Schepens, Bert; Depla, Erik; Saelens, Xavier

2011-12-01

In 1989, a new type of antibody was identified, first in the sera of dromedaries and later also in all other species of the Camelidae family. These antibodies do not contain a light chain and also lack the first constant heavy domain. Today it is still unclear what the evolutionary advantage of such heavy chain-only antibodies could be. In sharp contrast, the broad applicability of the isolated variable antigen-binding domains (VHH) was rapidly recognized, especially for the development of therapeutic proteins, called Nanobodies(®). Here we summarize first some of the unique characteristics and features of VHHs. These will next be described in the context of different experimental therapeutic applications of Nanobodies against different viruses: HIV, Hepatitis B virus, influenza virus, Respiratory Syncytial virus, Rabies virus, FMDV, Poliovirus, Rotavirus, and PERVs. Next, the diagnostic application of VHHs (Vaccinia virus, Marburg virus and plant Tulip virus X), as well as an industrial application (lytic lactococcal 936 phage) will be described. In addition, the described data show that monovalent Nanobodies can possess unique characteristics not observed with conventional antibodies. The straightforward formatting into bivalent, multivalent, and/or multispecific Nanobodies allowed tailoring molecules for potency and cross-reactivity against viral targets with high sequence diversity. Copyright © 2011. Published by Elsevier B.V.

Sequence and Structure Analysis of Distantly-Related Viruses Reveals Extensive Gene Transfer between Viruses and Hosts and among Viruses

PubMed Central

Caprari, Silvia; Metzler, Saskia; Lengauer, Thomas; Kalinina, Olga V.

2015-01-01

The origin and evolution of viruses is a subject of ongoing debate. In this study, we provide a full account of the evolutionary relationships between proteins of significant sequence and structural similarity found in viruses that belong to different classes according to the Baltimore classification. We show that such proteins can be found in viruses from all Baltimore classes. For protein families that include these proteins, we observe two patterns of the taxonomic spread. In the first pattern, they can be found in a large number of viruses from all implicated Baltimore classes. In the other pattern, the instances of the corresponding protein in species from each Baltimore class are restricted to a few compact clades. Proteins with the first pattern of distribution are products of so-called viral hallmark genes reported previously. Additionally, this pattern is displayed by the envelope glycoproteins from Flaviviridae and Bunyaviridae and helicases of superfamilies 1 and 2 that have homologs in cellular organisms. The second pattern can often be explained by horizontal gene transfer from the host or between viruses, an example being Orthomyxoviridae and Coronaviridae hemagglutinin esterases. Another facet of horizontal gene transfer comprises multiple independent introduction events of genes from cellular organisms into otherwise unrelated viruses. PMID:26492264

Ultraviolet micro-Raman spectrograph for the detection of small numbers of bacterial cells

NASA Astrophysics Data System (ADS)

Chadha, S.; Nelson, W. H.; Sperry, J. F.

1993-11-01

The construction of a practical UV micro-Raman spectrograph capable of selective excitation of bacterial cells and other microscopic samples has been described. A reflective objective is used to focus cw laser light on a sample and at the same time collect the scattered light at 180°. With the aid of a quartz lens the image produced is focused on the slits of a spectrograph equipped with a single 2400 grooves/mm grating optimized for 250 nm. Spectra were detected by means of a blue-intensified diode array detector. Resonance Raman spectra of Bacillus subtilis and Flavobacterium capsulatum excited by the 257.2 nm output of a cw laser were recorded in the 900-1800 cm-1 region. Bacterial cells were immobilized on a quartz plate by means of polylysine and were counted visually. Cooling was required to retard sample degradation. Sample sizes ranged from 1 to 50 cells with excitation times varying from 15 to 180 s. Excellent spectra have been obtained from 20 cells in 15 s using a spectrograph having only 3% throughput.

SPRAT: Spectrograph for the Rapid Acquisition of Transients

NASA Astrophysics Data System (ADS)

Piascik, A. S.; Steele, Iain A.; Bates, Stuart D.; Mottram, Christopher J.; Smith, R. J.; Barnsley, R. M.; Bolton, B.

2014-07-01

We describe the development of a low cost, low resolution (R ~ 350), high throughput, long slit spectrograph covering visible (4000-8000) wavelengths. The spectrograph has been developed for fully robotic operation with the Liverpool Telescope (La Palma). The primary aim is to provide rapid spectral classification of faint (V ˜ 20) transient objects detected by projects such as Gaia, iPTF (intermediate Palomar Transient Factory), LOFAR, and a variety of high energy satellites. The design employs a volume phase holographic (VPH) transmission grating as the dispersive element combined with a prism pair (grism) in a linear optical path. One of two peak spectral sensitivities are selectable by rotating the grism. The VPH and prism combination and entrance slit are deployable, and when removed from the beam allow the collimator/camera pair to re-image the target field onto the detector. This mode of operation provides automatic acquisition of the target onto the slit prior to spectrographic observation through World Coordinate System fitting. The selection and characterisation of optical components to maximise photon throughput is described together with performance predictions.

Multi-object medium resolution optical spectroscopy at the E-ELT

NASA Astrophysics Data System (ADS)

Spanò, Paolo; Bonifacio, Piercarlo

2008-07-01

We present the design of a compact medium resolution spectrograph (R~15,000-20,000), intended to operate on a 42m telescope in seeing-limited mode. Our design takes full advantage of some new technology optical components, like volume phase holographic (VPH) gratings. At variance with the choice of complex large echelle spectrographs, which have been the standard on 8m class telescopes, we selected an efficient VPH spectrograph with a limited beam diameter, in order to keep overall dimensions and costs low, using proven available technologies. To obtain such a resolution, we need to moderately slice the telescope image plane onto the spectrograph entrance slit (5-6 slices). Then, standard telescope AO-mode (GLAO, Ground Layer Adaptive Optics) can be used over a large field of view (~10 arcmin), without loosing efficiency. Multiplex capabilities can greatly increase the observing efficiency. A robotic pick-up mirror system can be implemented, within conventional environmental conditions (temperature, pressure, gravity, size), demanding only standard mechanical and optical tolerances. A modular approach allows us scaling multiplex capabilities on overall costs and available space.

Simulating the WFIRST coronagraph integral field spectrograph

NASA Astrophysics Data System (ADS)

Rizzo, Maxime J.; Groff, Tyler D.; Zimmermann, Neil T.; Gong, Qian; Mandell, Avi M.; Saxena, Prabal; McElwain, Michael W.; Roberge, Aki; Krist, John; Riggs, A. J. Eldorado; Cady, Eric J.; Mejia Prada, Camilo; Brandt, Timothy; Douglas, Ewan; Cahoy, Kerri

2017-09-01

A primary goal of direct imaging techniques is to spectrally characterize the atmospheres of planets around other stars at extremely high contrast levels. To achieve this goal, coronagraphic instruments have favored integral field spectrographs (IFS) as the science cameras to disperse the entire search area at once and obtain spectra at each location, since the planet position is not known a priori. These spectrographs are useful against confusion from speckles and background objects, and can also help in the speckle subtraction and wavefront control stages of the coronagraphic observation. We present a software package, the Coronagraph and Rapid Imaging Spectrograph in Python (crispy) to simulate the IFS of the WFIRST Coronagraph Instrument (CGI). The software propagates input science cubes using spatially and spectrally resolved coronagraphic focal plane cubes, transforms them into IFS detector maps and ultimately reconstructs the spatio-spectral input scene as a 3D datacube. Simulated IFS cubes can be used to test data extraction techniques, refine sensitivity analyses and carry out design trade studies of the flight CGI-IFS instrument. crispy is a publicly available Python package and can be adapted to other IFS designs.

A new study of muons in air showers by NBU air shower array

NASA Technical Reports Server (NTRS)

Chaudhuri, N.; Mukherjee, N.; Sarkar, S.; Basak, D. K.; Ghosh, B.

1985-01-01

The North Bengal University (NBU) air shower array has been in operation in conjunction with two muon magnetic spectrographs. The array incorporates 21 particle density sampling detectors around the magnetic spectrographs covering an area of 900 sq m. The layout of the array is based on the arrangement of detectors in a square symmetry. The array set up on the ground level is around a 10 m high magnetic spectrograph housing. This magnetic spectrograph housing limits the zenith angular acceptance of the incident showers to a few degrees. Three hundred muons in the fitted showers of size range 10 to the 4th power to 10 to the 5th power particles have so far been scanned and the momenta determined in the momentum range 2 - 440 GeV/c. More than 1500 recorded showers are now in the process of scanning and fitting. A lateral distribution of muons of energy greater than 300 MeV in the shower size range 10 to the 5th power to 7 x 10 to the 5th power has been obtained.

When a Sore Throat Is a More Serious Infection

MedlinePlus

... often called Hand, Foot, and Mouth disease). Infectious mononucleosis can produce a sore throat, often with marked ... most young children who are infected with the mononucleosis virus have few or no symptoms. Strep throat ...

Electromagnetic Fields and Public Health: Mobile Phones

MedlinePlus

... Ebola virus disease » Home / News / Fact sheets / Detail Electromagnetic fields and public health: mobile phones 8 October ... fixed antennas called base stations. Radiofrequency waves are electromagnetic fields, and unlike ionizing radiation such as X- ...

Fifth Disease (Erythema Infectiosum)

MedlinePlus

... complications. Also called erythema infectiosum, it's caused by parvovirus B19. It's especially common in kids ages 5 to ... to become ill. The virus that causes it (parvovirus B19) can temporarily slow down or stop the body's ...

Bile culture

MedlinePlus

Culture - bile ... is placed in a special dish called a culture medium to see if bacteria, viruses, or fungi ... Chernecky CC, Berger BJ. Body fluid - anaerobic culture. In: ... . 6th ed. St Louis, MO: Elsevier Saunders; 2013:225-226. Kim AY, ...

Temperate bacterial viruses as double-edged swords in bacterial warfare.

PubMed

Gama, João Alves; Reis, Ana Maria; Domingues, Iolanda; Mendes-Soares, Helena; Matos, Ana Margarida; Dionisio, Francisco

2013-01-01

It has been argued that bacterial cells may use their temperate viruses as biological weapons. For instance, a few bacterial cells among a population of lysogenic cells could release the virus and kill susceptible non-lysogenic competitors, while their clone mates would be immune. Because viruses replicate inside their victims upon infection, this process would amplify their number in the arena. Sometimes, however, temperate viruses spare recipient cells from death by establishing themselves in a dormant state inside cells. This phenomenon is called lysogenization and, for some viruses such as the λ virus, the probability of lysogenization increases with the multiplicity of infection. Therefore, the amplification of viruses leads to conflicting predictions about the efficacy of temperate viruses as biological weapons: amplification can increase the relative advantage of clone mates of lysogens but also the likelihood of saving susceptible cells from death, because the probability of lysogenization is higher. To test the usefulness of viruses as biological weapons, we performed competition experiments between lysogenic Escherichia coli cells carrying the λ virus and susceptible λ-free E. coli cells, either in a structured or unstructured habitat. In structured and sometimes in unstructured habitats, the λ virus qualitatively behaved as a "replicating toxin". However, such toxic effect of λ viruses ceased after a few days of competition. This was due to the fact that many of initially susceptible cells became lysogenic. Massive lysogenization of susceptible cells occurred precisely under the conditions where the amplification of the virus was substantial. From then on, these cells and their descendants became immune to the λ virus. In conclusion, if at short term bacterial cells may use temperate viruses as biological weapons, after a few days only the classical view of temperate bacterial viruses as parasitic agents prevails.

Temperate Bacterial Viruses as Double-Edged Swords in Bacterial Warfare

PubMed Central

Gama, João Alves; Reis, Ana Maria; Domingues, Iolanda; Mendes-Soares, Helena; Matos, Ana Margarida; Dionisio, Francisco

2013-01-01

It has been argued that bacterial cells may use their temperate viruses as biological weapons. For instance, a few bacterial cells among a population of lysogenic cells could release the virus and kill susceptible non-lysogenic competitors, while their clone mates would be immune. Because viruses replicate inside their victims upon infection, this process would amplify their number in the arena. Sometimes, however, temperate viruses spare recipient cells from death by establishing themselves in a dormant state inside cells. This phenomenon is called lysogenization and, for some viruses such as the λ virus, the probability of lysogenization increases with the multiplicity of infection. Therefore, the amplification of viruses leads to conflicting predictions about the efficacy of temperate viruses as biological weapons: amplification can increase the relative advantage of clone mates of lysogens but also the likelihood of saving susceptible cells from death, because the probability of lysogenization is higher. To test the usefulness of viruses as biological weapons, we performed competition experiments between lysogenic Escherichia coli cells carrying the λ virus and susceptible λ-free E. coli cells, either in a structured or unstructured habitat. In structured and sometimes in unstructured habitats, the λ virus qualitatively behaved as a “replicating toxin”. However, such toxic effect of λ viruses ceased after a few days of competition. This was due to the fact that many of initially susceptible cells became lysogenic. Massive lysogenization of susceptible cells occurred precisely under the conditions where the amplification of the virus was substantial. From then on, these cells and their descendants became immune to the λ virus. In conclusion, if at short term bacterial cells may use temperate viruses as biological weapons, after a few days only the classical view of temperate bacterial viruses as parasitic agents prevails. PMID:23536852

The 4MOST facility control software

NASA Astrophysics Data System (ADS)

Pramskiy, Alexander; Mandel, Holger; Rothmaier, Florian; Stilz, Ingo; Winkler, Roland; Hahn, Thomas

2016-07-01

The 4-m Multi-Object Spectrographic Telescope (4MOST) is one high-resolution (R 18000) and two lowresolution (R fi 5000) spectrographs covering the wavelength range between 390 and 950 nm. The spectrographs will be installed on ESO VISTA telescope and will be fed by approximately 2400 fibres. The instrument is capable to simultaneously obtain spectra of about 2400 objects distributed over an hexagonal field-of-view of four square degrees. This paper aims at giving an overview of the control software design, which is based on the standard ESO VLT software architecture and customised to fit the needs of the 4MOST instrument. In particular, the facility control software is intended to arrange the precise positioning of the fibres, to schedule and observe many surveys in parallel, and to combine the output from the three spectrographs. Moreover, 4MOST's software will include user-friendly graphical user interfaces that enable users to interact with the facility control system and to monitor all data-taking and calibration tasks of the instrument. A secondary guiding system will be implemented to correct for any fibre exure and thus to improve 4MOST's guiding performance. The large amount of fibres requires the custom design of data exchange to avoid performance issues. The observation sequences are designed to use spectrographs in parallel with synchronous points for data exchange between subsystems. In order to control hardware devices, Programmable Logic Controller (PLC) components will be used, the new standard for future instruments at ESO.

The 1997 HST Calibration Workshop with a New Generation of Instruments

NASA Technical Reports Server (NTRS)

Casertano, S. (Editor); Jedrzejewski, R. (Editor); Keyes, T. (Editor); Stevens, M. (Editor)

1997-01-01

The Second Servicing mission in early 1997 has brought major changes to the Hubble Space Telescope (HST). Two of the original instruments, Faint Object Spectrograph (FOS) and Goddard High Resolution Spectrograph (GHRS), were taken out, and replaced by completely new instruments, the Space Telescope Imaging Spectrograph (STIS) and the Near Infrared Camera Multi-Object Spectrograph (NICMOS). Two new types of detectors were installed, and for the first time, HST gained infrared capabilities. A new Fine Guidance Sensor (FGS) was installed, with an alignment mechanism that could improve substantially both guiding and astrometric capabilities. With all these changes come new challenges. The characterization of the new instruments has required a major effort, both by their respective Investigation Definition Teams and at the Space Telescope Science Institute. All necessary final calibrations for the retired spectrographs needed to be carried out, and their properties definitively characterized. At the same time, work has continued to improve our understanding of the instruments that have remained on board. The results of these activities were discussed in the 1997 HST (Hubble Space Telescope) Calibration Workshop. The main focus of the Workshop was to provide users with the tools and the understanding they need to use HST's instruments and archival data to the best of their possibilities. This book contains the written record of the Workshop. As such, it should provide a valuable tool to all interested in using existing HST data or in proposing for new observations.

OPTIMOS-EVE optical design of a very efficient, high-multiplex, large spectral coverage, fiber-fed spectrograph at EELT

NASA Astrophysics Data System (ADS)

Spanò, P.; Tosh, I.; Chemla, F.

2010-07-01

OPTIMOS-EVE is a fiber-fed, high-multiplex, high-efficiency, large spectral coverage spectrograph for EELT covering visible and near-infrared simultaneously. More than 200 seeing-limited objects will be observed at the same time over the full 7 arcmin field of view of the telescope, feeding the spectrograph, asking for very large multiplexing at the spectrograph side. The spectrograph consists of two identical units. Each unit will have two optimized channels to observe both visible and near-infrared wavelengths at the same time, covering from 0.37 to 1.7 micron. To maximize the scientific return, a large simultaneous spectral coverage per exposure was required, up to 1/3 of the central wavelength. Moreover, different spectral resolution modes, spanning from 5'000 to 30'000, were defined to match very different sky targets. Many different optical solutions were generated during the initial study phase in order to select that one that will maximize performances within given constraints (mass, space, cost). Here we present the results of this study, with special attention to the baseline design. Efforts were done to keep size of the optical components well within present state-of-the-art technologies. For example, large glass blank sizes were limited to ~35 cm maximum diameter. VPH gratings were selected as dispersers, to improve efficiency, following their superblaze curve. This led to scanning gratings and cameras. Optical design will be described, together with expected performances.

The GMT-Consortium Large Earth Finder (G-CLEF): an optical Echelle spectrograph for the Giant Magellan Telescope (GMT)

NASA Astrophysics Data System (ADS)

Szentgyorgyi, Andrew; Baldwin, Daniel; Barnes, Stuart; Bean, Jacob; Ben-Ami, Sagi; Brennan, Patricia; Budynkiewicz, Jamie; Chun, Moo-Young; Conroy, Charlie; Crane, Jeffrey D.; Epps, Harland; Evans, Ian; Evans, Janet; Foster, Jeff; Frebel, Anna; Gauron, Thomas; Guzmán, Dani; Hare, Tyson; Jang, Bi-Ho; Jang, Jeong-Gyun; Jordan, Andres; Kim, Jihun; Kim, Kang-Miin; Mendes de Oliveira, Claudia Mendes; Lopez-Morales, Mercedes; McCracken, Kenneth; McMuldroch, Stuart; Miller, Joseph; Mueller, Mark; Oh, Jae Sok; Onyuksel, Cem; Ordway, Mark; Park, Byeong-Gon; Park, Chan; Park, Sung-Joon; Paxson, Charles; Phillips, David; Plummer, David; Podgorski, William; Seifahrt, Andreas; Stark, Daniel; Steiner, Joao; Uomoto, Alan; Walsworth, Ronald; Yu, Young-Sam

2016-08-01

The GMT-Consortium Large Earth Finder (G-CLEF) will be a cross-dispersed, optical band echelle spectrograph to be delivered as the first light scientific instrument for the Giant Magellan Telescope (GMT) in 2022. G-CLEF is vacuum enclosed and fiber-fed to enable precision radial velocity (PRV) measurements, especially for the detection and characterization of low-mass exoplanets orbiting solar-type stars. The passband of G-CLEF is broad, extending from 3500Å to 9500Å. This passband provides good sensitivity at blue wavelengths for stellar abundance studies and deep red response for observations of high-redshift phenomena. The design of G-CLEF incorporates several novel technical innovations. We give an overview of the innovative features of the current design. G-CLEF will be the first PRV spectrograph to have a composite optical bench so as to exploit that material's extremely low coefficient of thermal expansion, high in-plane thermal conductivity and high stiffness-to-mass ratio. The spectrograph camera subsystem is divided into a red and a blue channel, split by a dichroic, so there are two independent refractive spectrograph cameras. The control system software is being developed in model-driven software context that has been adopted globally by the GMT. G-CLEF has been conceived and designed within a strict systems engineering framework. As a part of this process, we have developed a analytical toolset to assess the predicted performance of G-CLEF as it has evolved through design phases.

BeeDoctor, a Versatile MLPA-Based Diagnostic Tool for Screening Bee Viruses

PubMed Central

De Smet, Lina; Ravoet, Jorgen; de Miranda, Joachim R.; Wenseleers, Tom; Mueller, Matthias Y.; Moritz, Robin F. A.; de Graaf, Dirk C.

2012-01-01

The long-term decline of managed honeybee hives in the world has drawn significant attention to the scientific community and bee-keeping industry. A high pathogen load is believed to play a crucial role in this phenomenon, with the bee viruses being key players. Most of the currently characterized honeybee viruses (around twenty) are positive stranded RNA viruses. Techniques based on RNA signatures are widely used to determine the viral load in honeybee colonies. High throughput screening for viral loads necessitates the development of a multiplex polymerase chain reaction approach in which different viruses can be targeted simultaneously. A new multiparameter assay, called “BeeDoctor”, was developed based on multiplex-ligation probe dependent amplification (MLPA) technology. This assay detects 10 honeybee viruses in one reaction. “BeeDoctor” is also able to screen selectively for either the positive strand of the targeted RNA bee viruses or the negative strand, which is indicative for active viral replication. Due to its sensitivity and specificity, the MLPA assay is a useful tool for rapid diagnosis, pathogen characterization, and epidemiology of viruses in honeybee populations. “BeeDoctor” was used for screening 363 samples from apiaries located throughout Flanders; the northern half of Belgium. Using the “BeeDoctor”, virus infections were detected in almost eighty percent of the colonies, with deformed wing virus by far the most frequently detected virus and multiple virus infections were found in 26 percent of the colonies. PMID:23144717

BeeDoctor, a versatile MLPA-based diagnostic tool for screening bee viruses.

PubMed

De Smet, Lina; Ravoet, Jorgen; de Miranda, Joachim R; Wenseleers, Tom; Mueller, Matthias Y; Moritz, Robin F A; de Graaf, Dirk C

2012-01-01

The long-term decline of managed honeybee hives in the world has drawn significant attention to the scientific community and bee-keeping industry. A high pathogen load is believed to play a crucial role in this phenomenon, with the bee viruses being key players. Most of the currently characterized honeybee viruses (around twenty) are positive stranded RNA viruses. Techniques based on RNA signatures are widely used to determine the viral load in honeybee colonies. High throughput screening for viral loads necessitates the development of a multiplex polymerase chain reaction approach in which different viruses can be targeted simultaneously. A new multiparameter assay, called "BeeDoctor", was developed based on multiplex-ligation probe dependent amplification (MLPA) technology. This assay detects 10 honeybee viruses in one reaction. "BeeDoctor" is also able to screen selectively for either the positive strand of the targeted RNA bee viruses or the negative strand, which is indicative for active viral replication. Due to its sensitivity and specificity, the MLPA assay is a useful tool for rapid diagnosis, pathogen characterization, and epidemiology of viruses in honeybee populations. "BeeDoctor" was used for screening 363 samples from apiaries located throughout Flanders; the northern half of Belgium. Using the "BeeDoctor", virus infections were detected in almost eighty percent of the colonies, with deformed wing virus by far the most frequently detected virus and multiple virus infections were found in 26 percent of the colonies.

Virus-Mimetic Fusogenic Exosomes for Direct Delivery of Integral Membrane Proteins to Target Cell Membranes.

PubMed

Yang, Yoosoo; Hong, Yeonsun; Nam, Gi-Hoon; Chung, Jin Hwa; Koh, Eunee; Kim, In-San

2017-04-01

An efficient system for direct delivery of integral membrane proteins is successfully developed using a new biocompatible exosome-based platform. Fusogenic exosomes harboring viral fusogen, vascular stomatitis virus (VSV)-G protein, can fuse with and modify plasma membranes in a process called "membrane editing." This can facilitate the transfer of biologically active membrane proteins into the target cell membranes both in vitro and in vivo. © 2017 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Mechanisms of Virus Assembly

PubMed Central

Perlmutter, Jason D.; Hagan, Michael F.

2015-01-01

Viruses are nanoscale entities containing a nucleic acid genome encased in a protein shell called a capsid, and in some cases surrounded by a lipid bilayer membrane. This review summarizes the physics that govern the processes by which capsids assembles within their host cells and in vitro. We describe the thermodynamics and kinetics for assembly of protein subunits into icosahedral capsid shells, and how these are modified in cases where the capsid assembles around a nucleic acid or on a lipid bilayer. We present experimental and theoretical techniques that have been used to characterize capsid assembly, and we highlight aspects of virus assembly which are likely to receive significant attention in the near future. PMID:25532951

Archaeal Viruses, Not Archaeal Phages: An Archaeological Dig

PubMed Central

Abedon, Stephen T.; Murray, Kelly L.

2013-01-01

Viruses infect members of domains Bacteria, Eukarya, and Archaea. While those infecting domain Eukarya are nearly universally described as “Viruses”, those of domain Bacteria, to a substantial extent, instead are called “Bacteriophages,” or “Phages.” Should the viruses of domain Archaea therefore be dubbed “Archaeal phages,” “Archaeal viruses,” or some other construct? Here we provide documentation of published, general descriptors of the viruses of domain Archaea. Though at first the term “Phage” or equivalent was used almost exclusively in the archaeal virus literature, there has been a nearly 30-year trend away from this usage, with some persistence of “Phage” to describe “Head-and-tail” archaeal viruses, “Halophage” to describe viruses of halophilic Archaea, use of “Prophage” rather than “Provirus,” and so forth. We speculate on the root of the early 1980's transition from “Phage” to “Virus” to describe these infectious agents, consider the timing of introduction of “Archaeal virus” (which can be viewed as analogous to “Bacterial virus”), identify numerous proposed alternatives to “Archaeal virus,” and also provide discussion of the general merits of the term, “Phage.” Altogether we identify in excess of one dozen variations on how the viruses of domain Archaea are described, and document the timing of both their introduction and use. PMID:23653528

Replacement of Murine Leukemia Virus Readthrough Mechanism by Human Immunodeficiency Virus Frameshift Allows Synthesis of Viral Proteins and Virus Replication

PubMed Central

Brunelle, Marie-Noëlle; Brakier-Gingras, Léa; Lemay, Guy

2003-01-01

Retroviruses use unusual recoding strategies to synthesize the Gag-Pol polyprotein precursor of viral enzymes. In human immunodeficiency virus, ribosomes translating full-length viral RNA can shift back by 1 nucleotide at a specific site defined by the presence of both a slippery sequence and a downstream stimulatory element made of an extensive secondary structure. This so-called frameshift mechanism could become a target for the development of novel antiviral strategies. A different recoding strategy is used by other retroviruses, such as murine leukemia viruses, to synthesize the Gag-Pol precursor; in this case, a stop codon is suppressed in a readthrough process, again due to the presence of a specific structure adopted by the mRNA. Development of antiframeshift agents will greatly benefit from the availability of a simple animal and virus model. For this purpose, the murine leukemia virus readthrough region was rendered inactive by mutagenesis and the frameshift region of human immunodeficiency virus was inserted to generate a chimeric provirus. This substitution of readthrough by frameshift allows the synthesis of viral proteins, and the chimeric provirus sequence was found to generate infectious viruses. This system could be a most interesting alternative to study ribosomal frameshift in the context of a virus amenable to the use of a simple animal model. PMID:12584361

The complete nucleotide sequence of the genome of Barley yellow dwarf virus-RMV reveals it to be a new Polerovirus distantly related to other yellow dwarf viruses

PubMed Central

Krueger, Elizabeth N.; Beckett, Randy J.; Gray, Stewart M.; Miller, W. Allen

2013-01-01

The yellow dwarf viruses (YDVs) of the Luteoviridae family represent the most widespread group of cereal viruses worldwide. They include the Barley yellow dwarf viruses (BYDVs) of genus Luteovirus, the Cereal yellow dwarf viruses (CYDVs) and Wheat yellow dwarf virus (WYDV) of genus Polerovirus. All of these viruses are obligately aphid transmitted and phloem-limited. The first described YDVs (initially all called BYDV) were classified by their most efficient vector. One of these viruses, BYDV-RMV, is transmitted most efficiently by the corn leaf aphid, Rhopalosiphum maidis. Here we report the complete 5612 nucleotide sequence of the genomic RNA of a Montana isolate of BYDV-RMV (isolate RMV MTFE87, Genbank accession no. KC921392). The sequence revealed that BYDV-RMV is a polerovirus, but it is quite distantly related to the CYDVs or WYDV, which are very closely related to each other. Nor is BYDV-RMV closely related to any other particular polerovirus. Depending on the gene that is compared, different poleroviruses (none of them a YDV) share the most sequence similarity to BYDV-RMV. Because of its distant relationship to other YDVs, and because it commonly infects maize via its vector, R. maidis, we propose that BYDV-RMV be renamed Maize yellow dwarf virus-RMV (MYDV-RMV). PMID:23888156

The complete nucleotide sequence of the genome of Barley yellow dwarf virus-RMV reveals it to be a new Polerovirus distantly related to other yellow dwarf viruses.

PubMed

Krueger, Elizabeth N; Beckett, Randy J; Gray, Stewart M; Miller, W Allen

2013-01-01

The yellow dwarf viruses (YDVs) of the Luteoviridae family represent the most widespread group of cereal viruses worldwide. They include the Barley yellow dwarf viruses (BYDVs) of genus Luteovirus, the Cereal yellow dwarf viruses (CYDVs) and Wheat yellow dwarf virus (WYDV) of genus Polerovirus. All of these viruses are obligately aphid transmitted and phloem-limited. The first described YDVs (initially all called BYDV) were classified by their most efficient vector. One of these viruses, BYDV-RMV, is transmitted most efficiently by the corn leaf aphid, Rhopalosiphum maidis. Here we report the complete 5612 nucleotide sequence of the genomic RNA of a Montana isolate of BYDV-RMV (isolate RMV MTFE87, Genbank accession no. KC921392). The sequence revealed that BYDV-RMV is a polerovirus, but it is quite distantly related to the CYDVs or WYDV, which are very closely related to each other. Nor is BYDV-RMV closely related to any other particular polerovirus. Depending on the gene that is compared, different poleroviruses (none of them a YDV) share the most sequence similarity to BYDV-RMV. Because of its distant relationship to other YDVs, and because it commonly infects maize via its vector, R. maidis, we propose that BYDV-RMV be renamed Maize yellow dwarf virus-RMV (MYDV-RMV).

CHLORELLA VIRUSES

PubMed Central

Yamada, Takashi; Onimatsu, Hideki; Van Etten, James L.

2007-01-01

Chlorella viruses or chloroviruses are large, icosahedral, plaque‐forming, double‐stranded‐DNA—containing viruses that replicate in certain strains of the unicellular green alga Chlorella. DNA sequence analysis of the 330‐kbp genome of Paramecium bursaria chlorella virus 1 (PBCV‐1), the prototype of this virus family (Phycodnaviridae), predict ∼366 protein‐encoding genes and 11 tRNA genes. The predicted gene products of ∼50% of these genes resemble proteins of known function, including many that are completely unexpected for a virus. In addition, the chlorella viruses have several features and encode many gene products that distinguish them from most viruses. These products include: (1) multiple DNA methyltransferases and DNA site‐specific endonucleases, (2) the enzymes required to glycosylate their proteins and synthesize polysaccharides such as hyaluronan and chitin, (3) a virus‐encoded K+ channel (called Kcv) located in the internal membrane of the virions, (4) a SET domain containing protein (referred to as vSET) that dimethylates Lys27 in histone 3, and (5) PBCV‐1 has three types of introns; a self‐splicing intron, a spliceosomal processed intron, and a small tRNA intron. Accumulating evidence indicates that the chlorella viruses have a very long evolutionary history. This review mainly deals with research on the virion structure, genome rearrangements, gene expression, cell wall degradation, polysaccharide synthesis, and evolution of PBCV‐1 as well as other related viruses. PMID:16877063

Easy and accurate reconstruction of whole HIV genomes from short-read sequence data with shiver.

PubMed

Wymant, Chris; Blanquart, François; Golubchik, Tanya; Gall, Astrid; Bakker, Margreet; Bezemer, Daniela; Croucher, Nicholas J; Hall, Matthew; Hillebregt, Mariska; Ong, Swee Hoe; Ratmann, Oliver; Albert, Jan; Bannert, Norbert; Fellay, Jacques; Fransen, Katrien; Gourlay, Annabelle; Grabowski, M Kate; Gunsenheimer-Bartmeyer, Barbara; Günthard, Huldrych F; Kivelä, Pia; Kouyos, Roger; Laeyendecker, Oliver; Liitsola, Kirsi; Meyer, Laurence; Porter, Kholoud; Ristola, Matti; van Sighem, Ard; Berkhout, Ben; Cornelissen, Marion; Kellam, Paul; Reiss, Peter; Fraser, Christophe

2018-01-01

Studying the evolution of viruses and their molecular epidemiology relies on accurate viral sequence data, so that small differences between similar viruses can be meaningfully interpreted. Despite its higher throughput and more detailed minority variant data, next-generation sequencing has yet to be widely adopted for HIV. The difficulty of accurately reconstructing the consensus sequence of a quasispecies from reads (short fragments of DNA) in the presence of large between- and within-host diversity, including frequent indels, may have presented a barrier. In particular, mapping (aligning) reads to a reference sequence leads to biased loss of information; this bias can distort epidemiological and evolutionary conclusions. De novo assembly avoids this bias by aligning the reads to themselves, producing a set of sequences called contigs. However contigs provide only a partial summary of the reads, misassembly may result in their having an incorrect structure, and no information is available at parts of the genome where contigs could not be assembled. To address these problems we developed the tool shiver to pre-process reads for quality and contamination, then map them to a reference tailored to the sample using corrected contigs supplemented with the user's choice of existing reference sequences. Run with two commands per sample, it can easily be used for large heterogeneous data sets. We used shiver to reconstruct the consensus sequence and minority variant information from paired-end short-read whole-genome data produced with the Illumina platform, for sixty-five existing publicly available samples and fifty new samples. We show the systematic superiority of mapping to shiver's constructed reference compared with mapping the same reads to the closest of 3,249 real references: median values of 13 bases called differently and more accurately, 0 bases called differently and less accurately, and 205 bases of missing sequence recovered. We also successfully applied shiver to whole-genome samples of Hepatitis C Virus and Respiratory Syncytial Virus. shiver is publicly available from https://github.com/ChrisHIV/shiver.

Understanding Colds: Anatomy of the Nose

MedlinePlus

... nasal secretions. (13) This interval is called the incubation period. Cold symptoms can also begin shortly after virus is first produced in the nose (10-12 hours). (13) The time from the beginning of the infection to the ...

Increasing use of yellow colors in Kyoto

NASA Astrophysics Data System (ADS)

Akita, Munehira; Nara, Iwao

2002-06-01

Colors used for commercial signboards, displayed outdoors as well as indoors through windows, such as a store sign, an advertising sign, a sky sign, a poster, a placard, and a billboard were extensively surveyed in Kyoto City, Japan, in 1998. The survey showed that various kinds of yellow painted signs have increased rapidly and invaded a center area and suburbs of the city. Vivid yellow, what we called it the Y98 virus, is specially considered a color unpleasantly matched to the city image of Kyoto which was the capital of Japan for nearly 1000 years (794 to 1868) and is endowed with cultural and historic heritage. Discussions trying to find out what we could do to prevent the rapid spread of a big commercial display painted with vivid yellows what we called 'the Y98 virus' over the city will be summarized in a main text.

PREDAC-H3: a user-friendly platform for antigenic surveillance of human influenza a(H3N2) virus based on hemagglutinin sequences.

PubMed

Peng, Yousong; Yang, Lei; Li, Honglei; Zou, Yuanqiang; Deng, Lizong; Wu, Aiping; Du, Xiangjun; Wang, Dayan; Shu, Yuelong; Jiang, Taijiao

2016-08-15

Timely surveillance of the antigenic dynamics of the influenza virus is critical for accurate selection of vaccine strains, which is important for effective prevention of viral spread and infection. Here, we provide a computational platform, called PREDAC-H3, for antigenic surveillance of human influenza A(H3N2) virus based on the sequence of surface protein hemagglutinin (HA). PREDAC-H3 not only determines the antigenic variants and antigenic cluster (grouped for similar antigenicity) to which the virus belongs, based on HA sequences, but also allows visualization of the spatial distribution and temporal dynamics of antigenic clusters of viruses isolated from around the world, thus assisting in antigenic surveillance of human influenza A(H3N2) virus. It is publicly available from: http://biocloud.hnu.edu.cn/influ411/html/index.php : yshu@cnic.org.cn or taijiao@moon.ibp.ac.cn. © The Author 2016. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com.

The LST scientific instruments

NASA Technical Reports Server (NTRS)

Levin, G. M.

1975-01-01

Seven scientific instruments are presently being studied for use with the Large Space Telescope (LST). These instruments are the F/24 Field Camera, the F/48-F/96 Planetary Camera, the High Resolution Spectrograph, the Faint Object Spectrograph, the Infrared Photometer, and the Astrometer. These instruments are being designed as facility instruments to be replaceable during the life of the Observatory.

Optomechanical design concept for the Giant Magellan Telescope Multi-object Astronomical and Cosmological Spectrograph (GMACS)

NASA Astrophysics Data System (ADS)

Prochaska, Travis; Sauseda, Marcus; Beck, James; Schmidt, Luke; Cook, Erika; DePoy, Darren L.; Marshall, Jennifer L.; Ribeiro, Rafael; Taylor, Keith; Jones, Damien; Froning, Cynthia; Pak, Soojong; Mendes de Oliveira, Claudia; Papovich, Casey; Ji, Tae-Geun; Lee, Hye-In

2016-08-01

We describe a preliminary conceptual optomechanical design for GMACS, a wide-field, multi-object, moderate resolution optical spectrograph for the Giant Magellan Telescope (GMT). This paper describes the details of the GMACS optomechanical conceptual design, including the requirements and considerations leading to the design, mechanisms, optical mounts, and predicted flexure performance.

An Integral-Field Spectrograph for a Terrestrial Planet Finding Mission

NASA Technical Reports Server (NTRS)

Heap, Sara R.

2011-01-01

We describe a conceptual design for an integral field spectrograph for characterizing exoplanets that we developed for NASA's Terrestrial Planet Finder Coronagraph (TPF-C), although it is equally applicable to an external-occulter mission. The spectrograph fulfills all four scientific objectives of a terrestrial planet finding mission by: (1) Spectrally characterizing the atmospheres of detected planets in search of signatures of habitability or even biological activity; (2) Directly detecting terrestrial planets in the habitable zone around nearby stars; (3) Studying all constituents of a planetary system including terrestrial and giant planets, gas and dust around sun-like stars of different ages and metallicities; (4) Enabling simultaneous, high-spatial-resolution, spectroscopy of all astrophysical sources regardless of central source luminosity, such as AGN's, proplyds, etc.

Astronomical near-infrared echelle gratings

NASA Astrophysics Data System (ADS)

Hinkle, Kenneth H.; Joyce, Richard R.; Liang, Ming

2014-07-01

High-resolution near-infrared echelle spectrographs require coarse rulings in order to match the free spectral range to the detector size. Standard near-IR detector arrays typically are 2 K x 2 K or 4 K x 4 K. Detectors of this size combined with resolutions in the range 30000 to 100000 require grating groove spacings in the range 5 to 20 lines/mm. Moderately high blaze angles are desirable to reduce instrument size. Echelle gratings with these characteristics have potential wide application in both ambient temperature and cryogenic astronomical echelle spectrographs. We discuss optical designs for spectrographs employing immersed and reflective echelle gratings. The optical designs set constraints on grating characteristics. We report on market choices for obtaining these gratings and review our experiments with custom diamond turned rulings.

The infrared spectrograph during the SIRTF pre-definition phase

NASA Technical Reports Server (NTRS)

Houck, James R.

1988-01-01

A test facility was set up to evaluate back-illuminated impurity band detectors constructed for an infrared spectrograph to be used on the Space Infrared Telescope Facility (SIRTF). Equipment built to perform the tests on these arrays is described. Initial tests have been geared toward determining dark current and read noise for the array. Four prior progress reports are incorporated into this report. They describe the first efforts in the detector development and testing effort; testing details and a new spectrograph concept; a discussion of resolution issues raised by the new design; management activities; a review of computer software and testing facility hardware; and a review of the preamplifier constructed as well as a revised schematic of the detector evaluation facility.

Don Hendrix, master Mount Wilson and Palomar Observatories optician

NASA Astrophysics Data System (ADS)

Osterbrock, Donald E.

2003-06-01

Don O. Hendrix, with at most a high-school education and no previous experience in optics, because an outstanding astronomical optician at Mount Wilson Observatory. He started making Schmidt-camera optics for spectrographs there in 1932, and ultimately made them for all the stellar and nebular spectrographs used at the prime, Newtonian, Cassegrain, and coudé foci of the 60-inch, 100-inch, and Palomar Hale 200-inch telescopes. He completed figuring and polishing the primary 200-inch mirror, and also the Lick Observatory 120-inch primary mirror. Mount Wilson and Palomar Observatory designers Theodore Dunham Jr., Rudolph Minkowski, and Ira S. Bowen led the way for many years in developing fast, effective astronomical spectrographs, based on Hendrix's skills.

VizieR Online Data Catalog: VI photometry and spectroscopy in h+{chi} Per (Currie+, 2010)

NASA Astrophysics Data System (ADS)

Currie, T.; Hernandez, J.; Irwin, J.; Kenyon, S. J.; Tokarz, S.; Balog, Z.; Bragg, A.; Berlind, P.; Calkins, M.

2010-04-01

Optical VI photometry of h and {chi} Persei were taken with the Mosaic Imager at the 4m Mayall telescope at the Kitt Peak National Observatory on 2006 October 13-16 and 27-30. We acquired low-resolution optical spectroscopy of Two Micron All Sky Survey (2MASS)-detected stars within 1deg2 of the cluster centers. For faint stars, we used the multiobject, fiber-fed spectrograph Hectospec on the 6.5m MMT. Brighter stars were observed with the fiber-fed spectrograph Hydra on the 3.5m WIYN telescope at Kitt Peak National Observatory and single-slit FAST spectrograph on the 1.5m Tillinghast telescope at the Fred Lawrence Whipple Observatory. (4 data files).

VizieR Online Data Catalog: MUSCLES Treasury Survey. IV. M dwarf UV fluxes (Youngblood+, 2017)

NASA Astrophysics Data System (ADS)

Youngblood, A.; France, K.; Loyd, R. O. P.; Brown, A.; Mason, J. P.; Schneider, P. C.; Tilley, M. A.; Berta-Thompson, Z. K.; Buccino, A.; Froning, C. S.; Hawley, S. L.; Linsky, J.; Mauas, P. J. D.; Redfield, S.; Kowalski, A.; Miguel, Y.; Newton, E. R.; Rugheimer, S.; Segura, A.; Roberge, A.; Vieytes, M.

2018-02-01

We selected stars with HST UV spectra and ground-based optical spectra either obtained directly by us or available in the VLT/XSHOOTER or Keck/HIRES public archives. Several targets have spectroscopic data obtained with the Dual Imaging Spectrograph (DIS) on the ARC 3.5m telescope at Apache Point Observatory (APO), R~2500, or the REOSC echelle spectrograph on the 2.15m telescope at Complejo Astronomico El Leoncito (CASLEO), R~12000, within a day or two of the HST observations. We also gathered spectra of GJ1132, GJ1214, and Proxima Cen on the nights of 2016 March 7-9 using the MIKE echelle spectrograph on the Magellan Clay telescope. (2 data files).

Genetic analysis of Asian measles virus strains--new endemic genotype in Nepal.

PubMed

Truong, A T; Mulders, M N; Gautam, D C; Ammerlaan, W; de Swart, R L; King, C C; Osterhaus, A D; Muller, C P

2001-07-01

In many parts of Asia measles virus (MV) continues to be endemic. However, little is known about the genetic characteristics of viruses circulating on this continent. This study reports the molecular epidemiological analysis based on the entire nucleocapsid (N) and hemagglutinin (H) genes of the first isolates from Nepal and Taiwan, as well as of recent MV strains from India, Indonesia, and China. Four isolates collected in various regions in Nepal during 1999 belonged to a new genotype, tentatively called D8. Another Nepalese isolate and one from India belonged to genotype D4. The diversity of the Nepalese strains indicated that measles continues to be endemic in this country. The isolate from Taiwan grouped with D3 viruses and one Chinese strain isolated in The Netherlands was assigned to the previously described clade H, known to be endemic in Mainland China. Molecular characterization emerges as an important tool for monitoring virus endemicity and vaccination efforts.

Global Avian Influenza Surveillance in Wild Birds: A Strategy to Capture Viral Diversity

PubMed Central

Machalaba, Catherine C.; Elwood, Sarah E.; Forcella, Simona; Smith, Kristine M.; Hamilton, Keith; Jebara, Karim B.; Swayne, David E.; Webby, Richard J.; Mumford, Elizabeth; Mazet, Jonna A.K.; Gaidet, Nicolas; Daszak, Peter

2015-01-01

Wild birds play a major role in the evolution, maintenance, and spread of avian influenza viruses. However, surveillance for these viruses in wild birds is sporadic, geographically biased, and often limited to the last outbreak virus. To identify opportunities to optimize wild bird surveillance for understanding viral diversity, we reviewed responses to a World Organisation for Animal Health–administered survey, government reports to this organization, articles on Web of Knowledge, and the Influenza Research Database. At least 119 countries conducted avian influenza virus surveillance in wild birds during 2008–2013, but coordination and standardization was lacking among surveillance efforts, and most focused on limited subsets of influenza viruses. Given high financial and public health burdens of recent avian influenza outbreaks, we call for sustained, cost-effective investments in locations with high avian influenza diversity in wild birds and efforts to promote standardized sampling, testing, and reporting methods, including full-genome sequencing and sharing of isolates with the scientific community. PMID:25811221

Virus Database and Online Inquiry System Based on Natural Vectors.

PubMed

Dong, Rui; Zheng, Hui; Tian, Kun; Yau, Shek-Chung; Mao, Weiguang; Yu, Wenping; Yin, Changchuan; Yu, Chenglong; He, Rong Lucy; Yang, Jie; Yau, Stephen St

2017-01-01

We construct a virus database called VirusDB (http://yaulab.math.tsinghua.edu.cn/VirusDB/) and an online inquiry system to serve people who are interested in viral classification and prediction. The database stores all viral genomes, their corresponding natural vectors, and the classification information of the single/multiple-segmented viral reference sequences downloaded from National Center for Biotechnology Information. The online inquiry system serves the purpose of computing natural vectors and their distances based on submitted genomes, providing an online interface for accessing and using the database for viral classification and prediction, and back-end processes for automatic and manual updating of database content to synchronize with GenBank. Submitted genomes data in FASTA format will be carried out and the prediction results with 5 closest neighbors and their classifications will be returned by email. Considering the one-to-one correspondence between sequence and natural vector, time efficiency, and high accuracy, natural vector is a significant advance compared with alignment methods, which makes VirusDB a useful database in further research.

Myxoma virus M130R is a novel virulence factor required for lethal myxomatosis in rabbits.

PubMed

Barrett, John W; Werden, Steven J; Wang, Fuan; McKillop, William M; Jimenez, June; Villeneuve, Danielle; McFadden, Grant; Dekaban, Gregory A

2009-09-01

Myxoma virus (MV) is a highly lethal, rabbit-specific poxvirus that induces a disease called myxomatosis in European rabbits. In an effort to understand the function of predicted immunomodulatory genes we have deleted various viral genes from MV and tested the ability of these knockout viruses to induce lethal myxomatosis. MV encodes a unique 15 kD cytoplasmic protein (M130R) that is expressed late (12h post infection) during infection. M130R is a non-essential gene for MV replication in rabbit, monkey or human cell lines. Construction of a targeted gene knockout virus (vMyx130KO) and infection of susceptible rabbits demonstrate that the M130R knockout virus is attenuated and that loss of M130R expression allows the rabbit host immune system to effectively respond to and control the lethal effects of MV. M130R expression is a bona fide poxviral virulence factor necessary for full and lethal development of myxomatosis.

Revisiting Jenner's mysteries, the role of the Beaugency lymph in the evolutionary path of ancient smallpox vaccines.

PubMed

Damaso, Clarissa R

2018-02-01

In 1796, Edward Jenner developed the smallpox vaccine consisting of pustular material obtained from lesions on cows affected by so-called cow-pox. The disease, caused by cowpox virus, confers crossprotection against smallpox. However, historical evidence suggests that Jenner might have used vaccinia virus or even horsepox virus instead of cowpox virus. Mysteries surrounding the origin and nature of the smallpox vaccine persisted during the 19th century, a period of intense exchange of vaccine strains, including the Beaugency lymph. This lymph was obtained from spontaneous cases of cow-pox in France in 1866 and then distributed worldwide. A detailed Historical Review of the distribution of the Beaugency lymph supports recent genetic analyses of extant vaccine strains, suggesting the lymph was probably a vaccinia strain or a horsepox-like virus. This Review is a historical investigation that revisits the mysteries of the smallpox vaccine and reveals an intricate evolutionary relationship of extant vaccinia strains. Copyright © 2018 Elsevier Ltd. All rights reserved.

Identification of reassortant pandemic H1N1 influenza virus in Korean pigs.

PubMed

Han, Jae Yeon; Park, Sung Jun; Kim, Hye Kwon; Rho, Semi; Nguyen, Giap Van; Song, Daesub; Kang, Bo Kyu; Moon, Hyung Jun; Yeom, Min Joo; Park, Bong Kyun

2012-05-01

Since the 2009 pandemic human H1N1 influenza A virus emerged in April 2009, novel reassortant strains have been identified throughout the world. This paper describes the detection and isolation of reassortant strains associated with human pandemic influenza H1N1 and swine influenza H1N2 (SIV) viruses in swine populations in South Korea. Two influenza H1N2 reassortants were detected, and subtyped by PCR. The strains were isolated using Madin- Darby canine kidney (MDCK) cells, and genetically characterized by phylogenetic analysis for genetic diversity. They consisted of human, avian, and swine virus genes that were originated from the 2009 pandemic H1N1 virus and a neuraminidase (NA) gene from H1N2 SIV previously isolated in North America. This identification of reassortment events in swine farms raises concern that reassortant strains may continuously circulate within swine populations, calling for the further study and surveillance of pandemic H1N1 among swine.

Reappearance of chikungunya, formerly called dengue, in the Americas.

PubMed

Halstead, Scott B

2015-04-01

After an absence of ≈200 years, chikungunya returned to the American tropics in 2013. The virus is maintained in a complex African zoonotic cycle but escapes into an urban cycle at 40- to 50-year intervals, causing global pandemics. In 1823, classical chikungunya, a viral exanthem in humans, occurred on Zanzibar, and in 1827, it arrived in the Caribbean and spread to North and South America. In Zanzibar, the disease was known as kidenga pepo, Swahili for a sudden cramp-like seizure caused by an evil spirit; in Cuba, it was known as dengue, a Spanish homonym of denga. During the eighteenth century, dengue (present-day chikungunya) was distinguished from breakbone fever (present-day dengue), another febrile exanthem. In the twentieth century, experiments resulted in the recovery and naming of present-day dengue viruses. In 1952, chikungunya virus was recovered during an outbreak in Tanzania, but by then, the virus had lost its original name to present-day dengue viruses.

Infection of Mosquito Cells (C6/36) by Dengue-2 Virus Interferes with Subsequent Infection by Yellow Fever Virus.

PubMed

Abrao, Emiliana Pereira; da Fonseca, Benedito Antônio Lopes

2016-02-01

Dengue is one of the most important diseases caused by arboviruses in the world. Yellow fever is another arthropod-borne disease of great importance to public health that is endemic to tropical regions of Africa and the Americas. Both yellow fever and dengue viruses are flaviviruses transmitted by Aedes aegypti mosquitoes, and then, it is reasonable to consider that in a given moment, mosquito cells could be coinfected by both viruses. Therefore, we decided to evaluate if sequential infections of dengue and yellow fever viruses (and vice-versa) in mosquito cells could affect the virus replication patterns. Using immunofluorescence and real-time PCR-based replication assays in Aedes albopictus C6/36 cells with single or sequential infections with both viruses, we demonstrated the occurrence of viral interference, also called superinfection exclusion, between these two viruses. Our results show that this interference pattern is particularly evident when cells were first infected with dengue virus and subsequently with yellow fever virus (YFV). Reduction in dengue virus replication, although to a lower extent, was also observed when C6/36 cells were initially infected with YFV followed by dengue virus infection. Although the importance that these findings have on nature is unknown, this study provides evidence, at the cellular level, of the occurrence of replication interference between dengue and yellow fever viruses and raises the question if superinfection exclusion could be a possible explanation, at least partially, for the reported lack of urban yellow fever occurrence in regions where a high level of dengue transmission occurs.

How accurately can we measure the water vapour content with astronomical spectra?

NASA Astrophysics Data System (ADS)

Kausch, Wolfgang; Noll, Stefan; Smette, Alain; Kimeswenger, Stefan; Kerber, Florian; Jones, Amy M.; Szyszka, Cezary; Unterguggenberger, Stefanie

2014-05-01

Light from astronomical objects unavoidably has to pass through the Earth's atmosphere when being observed by ground-based telescopes. Thus, the fingerprint of the atmospheric state at the time of the observation is present in any spectrum taken by astronomical spectrographs due to absorption and emission arising in the atmosphere. The Very Large Telescope (VLT), operated by the European Southern Observatory, is one of the world's largest telescope facilities located at Cerro Paranal in the Chilean Atacama Desert offering a wide selection of various instruments. One of the most versatile instruments is X-Shooter. This medium resolution Echelle spectrograph covers the entire wavelength regime from 0.3 to 2.5 μm and is mounted on one of the 8m-class telescopes of the VLT. Due to its versatility, it is widely used, which leads to a good temporal coverage. We have recently developed the software package molecfit, a tool used to model and correct for atmospheric absorption lines visible in astronomical spectra. It is based on the radiative transfer code LBLRTM, the HITRAN line parameter database, the GDAS atmospheric profiles, and local meteorological data. A by-product is the determination of the amount of precipitable water vapour (PWV) above the observatory, as well as several other molecules, including CO2. In this poster, we investigate the accuracy of this method. We have used a set of X-Shooter spectra of so-called telluric standard stars, which are hot and bright stars showing nearly no intrinsic spectral features in the near infrared regime. Thus, most absorption features present in these spectra are related to the absorption arising in the Earth's atmosphere. For each spectrum, we have determined the PWV with our molecfit code and compared it with direct measurements achieved by the LHATPRO radiometer recently installed at Cerro Paranal. Therefore we have extended the results obtained by Kerber et al. (2012, Proc. SPIE, 8446) on a long time scale. Due to the wide wavelength coverage of X-Shooter, the atmospheric content of CO2 can also successfully be determined. The good accuracy obtained by this method confirms that regular monitoring for a number of other molecules by the various spectrographs installed on the Very Large Telescope is possible.

A new infrared Fabry-Pérot-based radial-velocity-reference module for the SPIRou radial-velocity spectrograph

NASA Astrophysics Data System (ADS)

Cersullo, Federica; Wildi, François; Chazelas, Bruno; Pepe, Francesco

2017-05-01

Context. The field of exoplanet research is moving towards the detection and characterization of habitable planets. These exo-Earths can be easily found around low-mass stars by using either photometric transit or radial-velocity (RV) techniques. In the latter case the gain is twofold because the signal induced by the planet of a given mass is higher due to the more favourable planet-star mass ratio and because the habitable zone lies closer to the star. However, late-type stars emit mainly in the infrared (IR) wavelength range, which calls for IR instruments. Aims: SPIRou is a stable RV IR spectrograph addressing these ambitious scientific objectives. As with any other spectrograph, calibration and drift monitoring is fundamental to achieve high precision. However, the IR domain suffers from a lack of suitable reference spectral sources. Our goal was to build, test and finally operate a Fabry-Pérot-based RV-reference module able to provide the needed spectral information over the full wavelength range of SPIRou. Methods: We adapted the existing HARPS Fabry-Pérot calibrator for operation in the IR domain. After manufacturing and assembly, we characterized the FP RV-module in the laboratory before delivering it to the SPIRou integration site. In particular, we measured finesse, transmittance, and spectral flux of the system. Results: The measured finesse value of F = 12.8 corresponds perfectly to the theoretical value. The total transmittance at peak is of the order of 0.5%, mainly limited by fibre-connectors and interfaces. Nevertheless, the provided flux is in line with the the requirements set by the SPIRou instrument. Although we could test the stability of the system, we estimated it by comparing the SPIRou Fabry-Pérot with the already operating HARPS system and demonstrated a stability of better than 1 m s-1 during a night. Conclusions: Once installed on SPIRou, we will test the full spectral characteristics and stability of the RV-reference module. The goal will be to prove that the line position and shape stability of all lines is better than 0.3 m s-1 between two calibration sequences (typically 24 h), such that the RV-reference module can be used to monitor instrumental drifts. In principle, the system is also intrinsically stable over longer time scales such that it can also be used for calibration purposes.

Vocalisations of Killer Whales (Orcinus orca) in the Bremer Canyon, Western Australia.

PubMed

Wellard, Rebecca; Erbe, Christine; Fouda, Leila; Blewitt, Michelle

2015-01-01

To date, there has been no dedicated study in Australian waters on the acoustics of killer whales. Hence no information has been published on the sounds produced by killer whales from this region. Here we present the first acoustical analysis of recordings collected off the Western Australian coast. Underwater sounds produced by Australian killer whales were recorded during the months of February and March 2014 and 2015 in the Bremer Canyon in Western Australia. Vocalisations recorded included echolocation clicks, burst-pulse sounds and whistles. A total of 28 hours and 29 minutes were recorded and analysed, with 2376 killer whale calls (whistles and burst-pulse sounds) detected. Recordings of poor quality or signal-to-noise ratio were excluded from analysis, resulting in 142 whistles and burst-pulse vocalisations suitable for analysis and categorisation. These were grouped based on their spectrographic features into nine Bremer Canyon (BC) "call types". The frequency of the fundamental contours of all call types ranged from 600 Hz to 29 kHz. Calls ranged from 0.05 to 11.3 seconds in duration. Biosonar clicks were also recorded, but not studied further. Surface behaviours noted during acoustic recordings were categorised as either travelling or social behaviour. A detailed description of the acoustic characteristics is necessary for species acoustic identification and for the development of passive acoustic tools for population monitoring, including assessments of population status, habitat usage, migration patterns, behaviour and acoustic ecology. This study provides the first quantitative assessment and report on the acoustic features of killer whales vocalisations in Australian waters, and presents an opportunity to further investigate this little-known population.

Vocalisations of Killer Whales (Orcinus orca) in the Bremer Canyon, Western Australia

PubMed Central

Wellard, Rebecca; Erbe, Christine; Fouda, Leila; Blewitt, Michelle

2015-01-01

To date, there has been no dedicated study in Australian waters on the acoustics of killer whales. Hence no information has been published on the sounds produced by killer whales from this region. Here we present the first acoustical analysis of recordings collected off the Western Australian coast. Underwater sounds produced by Australian killer whales were recorded during the months of February and March 2014 and 2015 in the Bremer Canyon in Western Australia. Vocalisations recorded included echolocation clicks, burst-pulse sounds and whistles. A total of 28 hours and 29 minutes were recorded and analysed, with 2376 killer whale calls (whistles and burst-pulse sounds) detected. Recordings of poor quality or signal-to-noise ratio were excluded from analysis, resulting in 142 whistles and burst-pulse vocalisations suitable for analysis and categorisation. These were grouped based on their spectrographic features into nine Bremer Canyon (BC) “call types”. The frequency of the fundamental contours of all call types ranged from 600 Hz to 29 kHz. Calls ranged from 0.05 to 11.3 seconds in duration. Biosonar clicks were also recorded, but not studied further. Surface behaviours noted during acoustic recordings were categorised as either travelling or social behaviour. A detailed description of the acoustic characteristics is necessary for species acoustic identification and for the development of passive acoustic tools for population monitoring, including assessments of population status, habitat usage, migration patterns, behaviour and acoustic ecology. This study provides the first quantitative assessment and report on the acoustic features of killer whales vocalisations in Australian waters, and presents an opportunity to further investigate this little-known population. PMID:26352429

AIDS: An International Perspective.

ERIC Educational Resources Information Center

Piot, Peter; And Others

1988-01-01

Discusses some of the worldwide problems associated with the acquired immunodeficiency syndrome (AIDS) and infection with the human immunodeficiency virus type 1 (HIV-1). Calls for programs for the prevention and control of AIDS as an immediate priority in all countries. (TW)

First light results from the Hermes spectrograph at the AAT

NASA Astrophysics Data System (ADS)

Sheinis, Andrew; Barden, Sam; Birchall, Michael; Carollo, Daniela; Bland-Hawthorn, Joss; Brzeski, Jurek; Case, Scott; Cannon, Russell; Churilov, Vladimir; Couch, Warrick; Dean, Robert; De Silva, Gayandhi; D'Orazi, Valentina; Farrell, Tony; Fiegert, Kristin; Freeman, Kenneth; Frost, Gabriella; Gers, Luke; Goodwin, Michael; Gray, Doug; Heald, Ron; Heijmans, Jeroen; Jones, Damien; Keller, Stephan; Klauser, Urs; Kondrat, Yuriy; Lawrence, Jon; Lee, Steve; Mali, Slavko; Martell, Sarah; Mathews, Darren; Mayfield, Don; Miziarski, Stan; Muller, Rolf; Pai, Naveen; Patterson, Robert; Penny, Ed; Orr, David; Shortridge, Keith; Simpson, Jeffrey; Smedley, Scott; Smith, Greg; Stafford, Darren; Staszak, Nicholas; Vuong, Minh; Waller, Lewis; Wylie de Boer, Elizabeth; Xavier, Pascal; Zheng, Jessica; Zhelem, Ross; Zucker, Daniel

2014-07-01

The High Efficiency and Resolution Multi Element Spectrograph, HERMES is an facility-class optical spectrograph for the AAT. It is designed primarily for Galactic Archeology [21], the first major attempt to create a detailed understanding of galaxy formation and evolution by studying the history of our own galaxy, the Milky Way. The goal of the GALAH survey is to reconstruct the mass assembly history of the of the Milky Way, through a detailed spatially tagged abundance study of one million stars. The spectrograph is based at the Anglo Australian Telescope (AAT) and is fed by the existing 2dF robotic fiber positioning system. The spectrograph uses VPH-gratings to achieve a spectral resolving power of 28,000 in standard mode and also provides a high-resolution mode ranging between 40,000 to 50,000 using a slit mask. The GALAH survey requires a SNR greater than 100 for a star brightness of V=14. The total spectral coverage of the four channels is about 100nm between 370 and 1000nm for up to 392 simultaneous targets within the 2 degree field of view. Hermes has been commissioned over 3 runs, during bright time in October, November and December 2013, in parallel with the beginning of the GALAH Pilot survey starting in November 2013. In this paper we present the first-light results from the commissioning run and the beginning of the GALAH Survey, including performance results such as throughput and resolution, as well as instrument reliability. We compare the abundance calculations from the pilot survey to those in the literature.

Efficient photonic reformatting of celestial light for diffraction-limited spectroscopy

NASA Astrophysics Data System (ADS)

MacLachlan, D. G.; Harris, R. J.; Gris-Sánchez, I.; Morris, T. J.; Choudhury, D.; Gendron, E.; Basden, A. G.; Spaleniak, I.; Arriola, A.; Birks, T. A.; Allington-Smith, J. R.; Thomson, R. R.

2017-02-01

The spectral resolution of a dispersive astronomical spectrograph is limited by the trade-off between throughput and the width of the entrance slit. Photonic guided wave transitions have been proposed as a route to bypass this trade-off, by enabling the efficient reformatting of incoherent seeing-limited light collected by the telescope into a linear array of single modes: a pseudo-slit which is highly multimode in one axis but diffraction-limited in the dispersion axis of the spectrograph. It is anticipated that the size of a single-object spectrograph fed with light in this manner would be essentially independent of the telescope aperture size. A further anticipated benefit is that such spectrographs would be free of `modal noise', a phenomenon that occurs in high-resolution multimode fibre-fed spectrographs due to the coherent nature of the telescope point spread function (PSF). We seek to address these aspects by integrating a multicore fibre photonic lantern with an ultrafast laser inscribed three-dimensional waveguide interconnect to spatially reformat the modes within the PSF into a diffraction-limited pseudo-slit. Using the CANARY adaptive optics (AO) demonstrator on the William Herschel Telescope, and 1530 ± 80 nm stellar light, the device exhibits a transmission of 47-53 per cent depending upon the mode of AO correction applied. We also show the advantage of using AO to couple light into such a device by sampling only the core of the CANARY PSF. This result underscores the possibility that a fully optimized guided-wave device can be used with AO to provide efficient spectroscopy at high spectral resolution.

Optical design of MEMS-based infrared multi-object spectrograph concept for the Gemini South Telescope

NASA Astrophysics Data System (ADS)

Chen, Shaojie; Sivanandam, Suresh; Moon, Dae-Sik

2016-08-01

We discuss the optical design of an infrared multi-object spectrograph (MOS) concept that is designed to take advantage of the multi-conjugate adaptive optics (MCAO) corrected field at the Gemini South telescope. This design employs a unique, cryogenic MEMS-based focal plane mask to select target objects for spectroscopy by utilizing the Micro-Shutter Array (MSA) technology originally developed for the Near Infrared Spectrometer (NIRSpec) of the James Webb Space Telescope (JWST). The optical design is based on all spherical refractive optics, which serves both imaging and spectroscopic modes across the wavelength range of 0.9-2.5 μm. The optical system consists of a reimaging system, MSA, collimator, volume phase holographic (VPH) grisms, and spectrograph camera optics. The VPH grisms, which are VPH gratings sandwiched between two prisms, provide high dispersing efficiencies, and a set of several VPH grisms provide the broad spectral coverage at high throughputs. The imaging mode is implemented by removing the MSA and the dispersing unit out of the beam. We optimize both the imaging and spectrographic modes simultaneously, while paying special attention to the performance of the pupil imaging at the cold stop. Our current design provides a 1' ♢ 1' and a 0.5' ♢ 1' field of views for imaging and spectroscopic modes, respectively, on a 2048 × 2048 pixel HAWAII-2RG detector array. The spectrograph's slit width and spectral resolving power are 0.18'' and 3,000, respectively, and spectra of up to 100 objects can be obtained simultaneously. We present the overall results of simulated performance using optical model we designed.

History of Hubble Space Telescope (HST)

NASA Image and Video Library

1981-01-01

This drawing illustrates the Hubble Space Telescope's (HST's), Goddard High-Resolution Spectrograph (GHRS). The HST's two spectrographs, the GHRS and the Faint Object Spectrograph (FOS), can detect a broader range of wavelengths than is possible from Earth because there is no atmosphere to absorb certain wavelengths. Scientists can determine the chemical composition, temperature, pressure, and turbulence of the stellar atmosphere producing the light, all from spectral data. The GHRS can detect fine details in the light from somewhat brighter objects but only ultraviolet light. Both spectrographs operate in essentially the same way. The incoming light passes through a small entrance aperture, then passes through filters and diffraction gratings, that work like prisms. The filter or grating used determines what range of wavelength will be examined and in what detail. Then the spectrograph detectors record the strength of each wavelength band and sends it back to Earth. The purpose of the HST, the most complex and sensitive optical telescope ever made, is to study the cosmos from a low-Earth orbit. By placing the telescope in space, astronomers are able to collect data that is free of the Earth's atmosphere. The HST views galaxies, stars, planets, comets, possibly other solar systems, and even unusual phenomena such as quasars, with 10 times the clarity of ground-based telescopes. The HST was deployed from the Space Shuttle Discovery (STS-31 mission) into Earth orbit in April 1990. The Marshall Space Flight Center had responsibility for design, development, and construction of the HST. The Perkin-Elmer Corporation, in Danbury, Cornecticut, developed the optical system and guidance sensors.

History of Hubble Space Telescope (HST)

NASA Image and Video Library

1981-01-01

This drawing illustrates the Hubble Space Telescope's (HST's), Faint Object Spectrograph (FOS). The HST's two spectrographs, the Goddard High-Resolution Spectrograph and the FOS, can detect a broader range of wavelengths than is possible from the Earth because there is no atmosphere to absorb certain wavelengths. Scientists can determine the chemical composition, temperature, pressure, and turbulence of the stellar atmosphere producing the light, all from spectral data. The FOC can detect detail in very faint objects, such as those at great distances, and light ranging from ultraviolet to red spectral bands. Both spectrographs operate in essentially the same way. The incoming light passes through a small entrance aperture, then passes through filters and diffraction gratings, that work like prisms. The filter or grating used determines what range of wavelength will be examined and in what detail. Then the spectrograph detectors record the strength of each wavelength band and sends it back to Earth. The purpose of the HST, the most complex and sensitive optical telescope ever made, is to study the cosmos from a low-Earth orbit. By placing the telescope in space, astronomers are able to collect data that is free of the Earth's atmosphere. The HST views galaxies, stars, planets, comets, possibly other solar systems, and even unusual phenomena such as quasars, with 10 times the clarity of ground-based telescopes. The HST was deployed from the Space Shuttle Discovery (STS-31 mission) into Earth orbit in April 1990. The Marshall Space Flight Center had responsibility for design, development, and construction of the HST. The Perkin-Elmer Corporation, in Danbury, Cornecticut, developed the optical system and guidance sensors.

PRAXIS: a near infrared spectrograph optimised for OH suppression

NASA Astrophysics Data System (ADS)

Ellis, S. C.; Bauer, S.; Bland-Hawthorn, J.; Case, S.; Content, R.; Fechner, T.; Giannone, D.; Haynes, R.; Hernandez, E.; Horton, A. J.; Klauser, U.; Lawrence, J. S.; Leon-Saval, S. G.; Lindley, E.; Löhmannsröben, H.-G.; Min, S.-S.; Pai, N.; Roth, M.; Shortridge, K.; Staszak, Nicholas F.; Tims, Julia; Xavier, Pascal; Zhelem, Ross

2016-08-01

Atmospheric emission from OH molecules is a long standing problem for near-infrared astronomy. PRAXIS is a unique spectrograph, currently in the build-phase, which is fed by a fibre array that removes the OH background. The OH suppression is achieved with fibre Bragg gratings, which were tested successfully on the GNOSIS instrument. PRAXIS will use the same fibre Bragg gratings as GNOSIS in the first implementation, and new, less expensive and more efficient, multicore fibre Bragg gratings in the second implementation. The OH lines are suppressed by a factor of 1000, and the expected increase in the signal-to-noise in the interline regions compared to GNOSIS is a factor of 9 with the GNOSIS gratings and a factor of 17 with the new gratings. PRAXIS will enable the full exploitation of OH suppression for the first time, which was not achieved by GNOSIS due to high thermal emission, low spectrograph transmission, and detector noise. PRAXIS will have extremely low thermal emission, through the cooling of all significantly emitting parts, including the fore-optics, the fibre Bragg gratings, a long length of fibre, and a fibre slit, and an optical design that minimises leaks of thermal emission from outside the spectrograph. PRAXIS will achieve low detector noise through the use of a Hawaii-2RG detector, and a high throughput through an efficient VPH based spectrograph. The scientific aims of the instrument are to determine the absolute level of the interline continuum and to enable observations of individual objects via an IFU. PRAXIS will first be installed on the AAT, then later on an 8m class telescope.

Prime Focus Spectrograph for the Subaru telescope: massively multiplexed optical and near-infrared fiber spectrograph

NASA Astrophysics Data System (ADS)

Sugai, Hajime; Tamura, Naoyuki; Karoji, Hiroshi; Shimono, Atsushi; Takato, Naruhisa; Kimura, Masahiko; Ohyama, Youichi; Ueda, Akitoshi; Aghazarian, Hrand; de Arruda, Marcio Vital; Barkhouser, Robert H.; Bennett, Charles L.; Bickerton, Steve; Bozier, Alexandre; Braun, David F.; Bui, Khanh; Capocasale, Christopher M.; Carr, Michael A.; Castilho, Bruno; Chang, Yin-Chang; Chen, Hsin-Yo; Chou, Richard C. Y.; Dawson, Olivia R.; Dekany, Richard G.; Ek, Eric M.; Ellis, Richard S.; English, Robin J.; Ferrand, Didier; Ferreira, Décio; Fisher, Charles D.; Golebiowski, Mirek; Gunn, James E.; Hart, Murdock; Heckman, Timothy M.; Ho, Paul T. P.; Hope, Stephen; Hovland, Larry E.; Hsu, Shu-Fu; Hu, Yen-Shan; Huang, Pin Jie; Jaquet, Marc; Karr, Jennifer E.; Kempenaar, Jason G.; King, Matthew E.; le Fèvre, Olivier; Mignant, David Le; Ling, Hung-Hsu; Loomis, Craig; Lupton, Robert H.; Madec, Fabrice; Mao, Peter; Souza Marrara, Lucas; Ménard, Brice; Morantz, Chaz; Murayama, Hitoshi; Murray, Graham J.; Cesar de Oliveira, Antonio; Mendes de Oliveira, Claudia; Souza de Oliveira, Ligia; Orndorff, Joe D.; de Paiva Vilaça, Rodrigo; Partos, Eamon J.; Pascal, Sandrine; Pegot-Ogier, Thomas; Reiley, Daniel J.; Riddle, Reed; Santos, Leandro; dos Santos, Jesulino Bispo; Schwochert, Mark A.; Seiffert, Michael D.; Smee, Stephen A.; Smith, Roger M.; Steinkraus, Ronald E.; Sodré, Laerte; Spergel, David N.; Surace, Christian; Tresse, Laurence; Vidal, Clément; Vives, Sebastien; Wang, Shiang-Yu; Wen, Chih-Yi; Wu, Amy C.; Wyse, Rosie; Yan, Chi-Hung

2015-07-01

The Prime Focus Spectrograph (PFS) is an optical/near-infrared multifiber spectrograph with 2394 science fibers distributed across a 1.3-deg diameter field of view at the Subaru 8.2-m telescope. The wide wavelength coverage from 0.38 μm to 1.26 μm, with a resolving power of 3000, simultaneously strengthens its ability to target three main survey programs: cosmology, galactic archaeology and galaxy/AGN evolution. A medium resolution mode with a resolving power of 5000 for 0.71 μm to 0.89 μm will also be available by simply exchanging dispersers. We highlight some of the technological aspects of the design. To transform the telescope focal ratio, a broad-band coated microlens is glued to each fiber tip. A higher transmission fiber is selected for the longest part of the cable system, optimizing overall throughput; a fiber with low focal ratio degradation is selected for the fiber-positioner and fiber-slit components, minimizing the effects of fiber movements and fiber bending. Fiber positioning will be performed by a positioner consisting of two stages of piezo-electric rotary motors. The positions of these motors are measured by taking an image of artificially back-illuminated fibers with the metrology camera located in the Cassegrain container; the fibers are placed in the proper location by iteratively measuring and then adjusting the positions of the motors. Target light reaches one of the four identical fast-Schmidt spectrograph modules, each with three arms. The PFS project has passed several project-wide design reviews and is now in the construction phase.

Giant viruses coexisted with the cellular ancestors and represent a distinct supergroup along with superkingdoms Archaea, Bacteria and Eukarya

PubMed Central

2012-01-01

Background The discovery of giant viruses with genome and physical size comparable to cellular organisms, remnants of protein translation machinery and virus-specific parasites (virophages) have raised intriguing questions about their origin. Evidence advocates for their inclusion into global phylogenomic studies and their consideration as a distinct and ancient form of life. Results Here we reconstruct phylogenies describing the evolution of proteomes and protein domain structures of cellular organisms and double-stranded DNA viruses with medium-to-very-large proteomes (giant viruses). Trees of proteomes define viruses as a ‘fourth supergroup’ along with superkingdoms Archaea, Bacteria, and Eukarya. Trees of domains indicate they have evolved via massive and primordial reductive evolutionary processes. The distribution of domain structures suggests giant viruses harbor a significant number of protein domains including those with no cellular representation. The genomic and structural diversity embedded in the viral proteomes is comparable to the cellular proteomes of organisms with parasitic lifestyles. Since viral domains are widespread among cellular species, we propose that viruses mediate gene transfer between cells and crucially enhance biodiversity. Conclusions Results call for a change in the way viruses are perceived. They likely represent a distinct form of life that either predated or coexisted with the last universal common ancestor (LUCA) and constitute a very crucial part of our planet’s biosphere. PMID:22920653

Structure-based drug discovery for combating influenza virus by targeting the PA-PB1 interaction.

PubMed

Watanabe, Ken; Ishikawa, Takeshi; Otaki, Hiroki; Mizuta, Satoshi; Hamada, Tsuyoshi; Nakagaki, Takehiro; Ishibashi, Daisuke; Urata, Shuzo; Yasuda, Jiro; Tanaka, Yoshimasa; Nishida, Noriyuki

2017-08-25

Influenza virus infections are serious public health concerns throughout the world. The development of compounds with novel mechanisms of action is urgently required due to the emergence of viruses with resistance to the currently-approved anti-influenza viral drugs. We performed in silico screening using a structure-based drug discovery algorithm called Nagasaki University Docking Engine (NUDE), which is optimised for a GPU-based supercomputer (DEstination for Gpu Intensive MAchine; DEGIMA), by targeting influenza viral PA protein. The compounds selected by NUDE were tested for anti-influenza virus activity using a cell-based assay. The most potent compound, designated as PA-49, is a medium-sized quinolinone derivative bearing a tetrazole moiety, and it inhibited the replication of influenza virus A/WSN/33 at a half maximal inhibitory concentration of 0.47 μM. PA-49 has the ability to bind PA and its anti-influenza activity was promising against various influenza strains, including a clinical isolate of A(H1N1)pdm09 and type B viruses. The docking simulation suggested that PA-49 interrupts the PA-PB1 interface where important amino acids are mostly conserved in the virus strains tested, suggesting the strain independent utility. Because our NUDE/DEGIMA system is rapid and efficient, it may help effective drug discovery against the influenza virus and other emerging viruses.

Exploring the Universe with the Hubble Space Telescope

NASA Technical Reports Server (NTRS)

1990-01-01

A general overview is given of the operations, engineering challenges, and components of the Hubble Space Telescope. Deployment, checkout and servicing in space are discussed. The optical telescope assembly, focal plane scientific instruments, wide field/planetary camera, faint object spectrograph, faint object camera, Goddard high resolution spectrograph, high speed photometer, fine guidance sensors, second generation technology, and support systems and services are reviewed.

High-resolution ground-based spectroscopy: where and how ?

NASA Astrophysics Data System (ADS)

Pallavicini, R.

2002-07-01

An overview is presented of high-resolution optical spectrographs in operation or under development at large telescopes, with emphasis on those facilities best suited for the study of late-type stars and stellar surface inhomogeneities. Plans for the development of new high-resolution spectroscopic instruments are discussed with emphasis on the ICE spectrograph for the PEPSI spectropolarimeter at the LBT.

Conversational high resolution mass spectrographic data reduction

NASA Technical Reports Server (NTRS)

Romiez, M. P.

1973-01-01

A FORTRAN 4 program is described which reduces the data obtained from a high resolution mass spectrograph. The program (1) calculates an accurate mass for each line on the photoplate, and (2) assigns elemental compositions to each accurate mass. The program is intended for use in a time-shared computing environment and makes use of the conversational aspects of time-sharing operating systems.

Development of micro-mirror slicer integral field unit for space-borne solar spectrographs

NASA Astrophysics Data System (ADS)

Suematsu, Yoshinori; Saito, Kosuke; Koyama, Masatsugu; Enokida, Yukiya; Okura, Yukinobu; Nakayasu, Tomoyasu; Sukegawa, Takashi

2017-12-01

We present an innovative optical design for image slicer integral field unit (IFU) and a manufacturing method that overcomes optical limitations of metallic mirrors. Our IFU consists of a micro-mirror slicer of 45 arrayed, highly narrow, flat metallic mirrors and a pseudo-pupil-mirror array of off-axis conic aspheres forming three pseudo slits of re-arranged slicer images. A prototype IFU demonstrates that the final optical quality is sufficiently high for a visible light spectrograph. Each slicer micro-mirror is 1.58 mm long and 30 μm wide with surface roughness ≤1 nm rms, and edge sharpness ≤ 0.1 μm, etc. This IFU is small size and can be implemented in a multi-slit spectrograph without any moving mechanism and fore optics, in which one slit is real and the others are pseudo slits from the IFU. The IFU mirrors were deposited by a space-qualified, protected silver coating for high reflectivity in visible and near IR wavelength regions. These properties are well suitable for space-borne spectrograph such as the future Japanese solar space mission SOLAR-C. We present the optical design, performance of prototype IFU, and space qualification tests of the silver coating.

The end-to-end simulator for the E-ELT HIRES high resolution spectrograph

NASA Astrophysics Data System (ADS)

Genoni, M.; Landoni, M.; Riva, M.; Pariani, G.; Mason, E.; Di Marcantonio, P.; Disseau, K.; Di Varano, I.; Gonzalez, O.; Huke, P.; Korhonen, H.; Li Causi, Gianluca

2017-06-01

We present the design, architecture and results of the End-to-End simulator model of the high resolution spectrograph HIRES for the European Extremely Large Telescope (E-ELT). This system can be used as a tool to characterize the spectrograph both by engineers and scientists. The model allows to simulate the behavior of photons starting from the scientific object (modeled bearing in mind the main science drivers) to the detector, considering also calibration light sources, and allowing to perform evaluation of the different parameters of the spectrograph design. In this paper, we will detail the architecture of the simulator and the computational model which are strongly characterized by modularity and flexibility that will be crucial in the next generation astronomical observation projects like E-ELT due to of the high complexity and long-time design and development. Finally, we present synthetic images obtained with the current version of the End-to-End simulator based on the E-ELT HIRES requirements (especially high radial velocity accuracy). Once ingested in the Data reduction Software (DRS), they will allow to verify that the instrument design can achieve the radial velocity accuracy needed by the HIRES science cases.

Fiber IFU unit for the second generation VLT spectrograph KMOS

NASA Astrophysics Data System (ADS)

Tomono, Daigo; Weisz, Harald; Hofmann, Reiner

2003-03-01

KMOS is a cryogenic multi-object near-infrared spectrograph for the VLT. It will be equipped with about 20 deployable integral field units (IFUs) which can be positioned anywhere in the 7.2 arcmin diameter field o the VLT Nasmyth focus by a cryogenic robot. We describe IFUs using micro lens arrays and optical fibers to arrange the two-dimensional fields from the IFUs on the spectrograph entrance slit. Each micro-lens array is mounted in a spider arm which also houses the pre-optics with a cold stop. The spider arms are positioned by a cryogenic robot which is built around the image plane. For the IFUs, two solutions are considered: monolithic mirco-lens arrays with fibers attached to the back where the entrance pupil is imaged, and tapered fibers with integrated lenses which are bundled together to form a lens array. The flexibility of optical fibers relaxes boundary conditions for integration of the instrument components. On the other hand, FRD and geometric characteristics of optical fibers leads to higher AΩ accepted by the spectrograph. Conceptual design of the instrument is presented as well as advantages and disadvantages of the fiber IFUs.

The SED Machine: A Robotic Spectrograph for Fast Transient Classification

NASA Astrophysics Data System (ADS)

Blagorodnova, Nadejda; Neill, James D.; Walters, Richard; Kulkarni, Shrinivas R.; Fremling, Christoffer; Ben-Ami, Sagi; Dekany, Richard G.; Fucik, Jason R.; Konidaris, Nick; Nash, Reston; Ngeow, Chow-Choong; Ofek, Eran O.; O’ Sullivan, Donal; Quimby, Robert; Ritter, Andreas; Vyhmeister, Karl E.

2018-03-01

Current time domain facilities are finding several hundreds of transient astronomical events a year. The discovery rate is expected to increase in the future as soon as new surveys such as the Zwicky Transient Facility (ZTF) and the Large Synoptic Sky Survey (LSST) come online. Presently, the rate at which transients are classified is approximately one order or magnitude lower than the discovery rate, leading to an increasing “follow-up drought”. Existing telescopes with moderate aperture can help address this deficit when equipped with spectrographs optimized for spectral classification. Here, we provide an overview of the design, operations and first results of the Spectral Energy Distribution Machine (SEDM), operating on the Palomar 60-inch telescope (P60). The instrument is optimized for classification and high observing efficiency. It combines a low-resolution (R ∼ 100) integral field unit (IFU) spectrograph with “Rainbow Camera” (RC), a multi-band field acquisition camera which also serves as multi-band (ugri) photometer. The SEDM was commissioned during the operation of the intermediate Palomar Transient Factory (iPTF) and has already lived up to its promise. The success of the SEDM demonstrates the value of spectrographs optimized for spectral classification.

Can we use adaptive optics for UHR spectroscopy with PEPSI at the LBT?

NASA Astrophysics Data System (ADS)

Sacco, Germano G.; Pallavicini, Roberto; Spano, Paolo; Andersen, Michael; Woche, Manfred F.; Strassmeier, Klaus G.

2004-10-01

We investigate the potential of using adaptive optics (AO) in the V, R, and I bands to reach ultra-high resolution (UHR, R >= 200,000) in echelle spectrographs at 8-10m telescopes. In particular, we investigate the possibility of implementing an UHR mode for the fiber-fed spectrograph PEPSI (Potsdam Echelle Polarimetric and Spectrographic Instrument) being developed for the Large Binocular Telescope (LBT). By simulating the performances of the advanced AO system that will be available at first light at the LBT, and by using first-order estimates of the spectrograph performances, we calculate the total efficiency and signal to noise ratio (SNR) of PEPSI in the AO mode for stars of different magnitudes, different fiber core sizes, and different fractions of incident light diverted to the wavefront sensor. We conclude that AO can provide a significant advantage, of up to a factor ~2 in the V, R and I bands, for stars brighter than mR ~ 12 - 13. However, if these stars are observed at UHR in non-AO mode, slit losses caused by the need to use a very narrow slit can be compensated more effectively by the use of image slicers.

Solar glint suppression in compact planetary ultraviolet spectrographs

NASA Astrophysics Data System (ADS)

Davis, Michael W.; Cook, Jason C.; Grava, Cesare; Greathouse, Thomas K.; Gladstone, G. Randall; Retherford, Kurt D.

2015-08-01

Solar glint suppression is an important consideration in the design of compact photon-counting ultraviolet spectrographs. Southwest Research Institute developed the Lyman Alpha Mapping Project for the Lunar Reconnaissance Orbiter (launch in 2009), and the Ultraviolet Spectrograph on Juno (Juno-UVS, launch in 2011). Both of these compact spectrographs revealed minor solar glints in flight that did not appear in pre-launch analyses. These glints only appeared when their respective spacecraft were operating outside primary science mission parameters. Post-facto scattered light analysis verifies the geometries at which these glints occurred and why they were not caught during ground testing or nominal mission operations. The limitations of standard baffle design at near-grazing angles are discussed, as well as the importance of including surface scatter properties in standard stray light analyses when determining solar keep-out efficiency. In particular, the scattered light analysis of these two instruments shows that standard "one bounce" assumptions in baffle design are not always enough to prevent scattered sunlight from reaching the instrument focal plane. Future builds, such as JUICE-UVS, will implement improved scattered and stray light modeling early in the design phase to enhance capabilities in extended mission science phases, as well as optimize solar keep out volume.

Instrumentation progress at the Giant Magellan Telescope project

NASA Astrophysics Data System (ADS)

Jacoby, George H.; Bernstein, R.; Bouchez, A.; Colless, M.; Crane, Jeff; DePoy, D.; Espeland, B.; Hare, Tyson; Jaffe, D.; Lawrence, J.; Marshall, J.; McGregor, P.; Shectman, Stephen; Sharp, R.; Szentgyorgyi, A.; Uomoto, Alan; Walls, B.

2016-08-01

Instrument development for the 24m Giant Magellan Telescope (GMT) is described: current activities, progress, status, and schedule. One instrument team has completed its preliminary design and is currently beginning its final design (GCLEF, an optical 350-950 nm, high-resolution and precision radial velocity echelle spectrograph). A second instrument team is in its conceptual design phase (GMACS, an optical 350-950 nm, medium resolution, 6-10 arcmin field, multi-object spectrograph). A third instrument team is midway through its preliminary design phase (GMTIFS, a near-IR YJHK diffraction-limited imager/integral-field-spectrograph), focused on risk reduction prototyping and design optimization. A fourth instrument team is currently fabricating the 5 silicon immersion gratings needed to begin its preliminary design phase (GMTNIRS, a simultaneous JHKLM high-resolution, AO-fed, echelle spectrograph). And, another instrument team is focusing on technical development and prototyping (MANIFEST, a facility robotic, multifiber feed, with a 20 arcmin field of view). In addition, a medium-field (6 arcmin, 0.06 arcsec/pix) optical imager will support telescope and AO commissioning activities, and will excel at narrow-band imaging. In the spirit of advancing synergies with other groups, the challenges of running an ELT instrument program and opportunities for cross-ELT collaborations are discussed.

High-efficiency in situ resonant inelastic x-ray scattering (iRIXS) endstation at the Advanced Light Source

NASA Astrophysics Data System (ADS)

Qiao, Ruimin; Li, Qinghao; Zhuo, Zengqing; Sallis, Shawn; Fuchs, Oliver; Blum, Monika; Weinhardt, Lothar; Heske, Clemens; Pepper, John; Jones, Michael; Brown, Adam; Spucces, Adrian; Chow, Ken; Smith, Brian; Glans, Per-Anders; Chen, Yanxue; Yan, Shishen; Pan, Feng; Piper, Louis F. J.; Denlinger, Jonathan; Guo, Jinghua; Hussain, Zahid; Chuang, Yi-De; Yang, Wanli

2017-03-01

An endstation with two high-efficiency soft x-ray spectrographs was developed at Beamline 8.0.1 of the Advanced Light Source, Lawrence Berkeley National Laboratory. The endstation is capable of performing soft x-ray absorption spectroscopy, emission spectroscopy, and, in particular, resonant inelastic soft x-ray scattering (RIXS). Two slit-less variable line-spacing grating spectrographs are installed at different detection geometries. The endstation covers the photon energy range from 80 to 1500 eV. For studying transition-metal oxides, the large detection energy window allows a simultaneous collection of x-ray emission spectra with energies ranging from the O K-edge to the Ni L-edge without moving any mechanical components. The record-high efficiency enables the recording of comprehensive two-dimensional RIXS maps with good statistics within a short acquisition time. By virtue of the large energy window and high throughput of the spectrographs, partial fluorescence yield and inverse partial fluorescence yield signals could be obtained for all transition metal L-edges including Mn. Moreover, the different geometries of these two spectrographs (parallel and perpendicular to the horizontal polarization of the beamline) provide contrasts in RIXS features with two different momentum transfers.

Performance of the FOS and GHRS Pt/(Cr)-Ne Hollow-cathode Lamps after their Return from Space and Comparison with Archival Data

NASA Technical Reports Server (NTRS)

Kerber, Florian; Lindler, Don; Bristow, Paul; Lembke, Dominik; Nave, Gillian; Reader, Joseph; Sansonetti, Craig J.; Heap, Sara R.; Rosa, Michael R.; Wood, H. John

2006-01-01

The Space Telescope European Coordinating Facility (ST-ECF) and National Institute of Standards and Technology (NIST) are collaborating to study hollow cathode calibration lamps as used onboard the Hubble Space Telescope (HST). As part of the STIS Calibration Enhancement (STIS-CE) Project we are trying to improve our understanding of the performance of hollow cathode lamps and the physical processes involved in their long term operation. The original flight lamps from the Faint Object Spectrograph (FOS) and the Goddard High Resolution Spectrograph (GHRS) are the only lamps that have ever been returned to Earth after extended operation in space. We have taken spectra of all four lamps using NIST s 10.7-m normal-incidence spectrograph and Fourier transform spectrometer (FTS) optimized for use in the ultraviolet (UV). These spectra, together with spectra archived from six years of on-orbit operations and pre-launch spectra, provide a unique data set - covering a period of about 20 years - for studying aging effects in these lamps. Our findings represent important lessons for the choice and design of calibration sources and their operation in future UV and optical spectrographs in space.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Qiao, Ruimin; Li, Qinghao; Zhuo, Zengqing

In this paper, an endstation with two high-efficiency soft x-ray spectrographs was developed at Beamline 8.0.1 of the Advanced Light Source, Lawrence Berkeley National Laboratory. The endstation is capable of performing soft x-ray absorption spectroscopy, emission spectroscopy, and, in particular, resonant inelastic soft x-ray scattering (RIXS). Two slit-less variable line-spacing grating spectrographs are installed at different detection geometries. The endstation covers the photon energy range from 80 to 1500 eV. For studying transition-metal oxides, the large detection energy window allows a simultaneous collection of x-ray emission spectra with energies ranging from the O K-edge to the Ni L-edge without movingmore » any mechanical components. The record-high efficiency enables the recording of comprehensive two-dimensional RIXS maps with good statistics within a short acquisition time. By virtue of the large energy window and high throughput of the spectrographs, partial fluorescence yield and inverse partial fluorescence yield signals could be obtained for all transition metal L-edges including Mn. Finally and moreover, the different geometries of these two spectrographs (parallel and perpendicular to the horizontal polarization of the beamline) provide contrasts in RIXS features with two different momentum transfers.« less

Spectral Analysis of CLU Galaxies

NASA Astrophysics Data System (ADS)

Sutter, Jessica; Cook, David O.; Kasliwal, Mansi M.; Dale, Daniel A.

2017-01-01

In order to help select possible EM signals from gravitational wave-emitting sources, a more complete catalog of local galaxies is being created. This catalog, called the Census of the Local Universe (CLU), will attempt to find the position of all star-forming galaxies within 200 Mpc. By doing this, the area on the sky from which a gravitational wave could possibly have originated is reduced by a factor of 100. Besides providing this valuable resource for gravitational wave follow-up, the CLU survey provides an exciting new opportunity for better understanding the properties of galaxies near the same age as the Milky Way. Using spectra obtained with the Palomar 200-inch double-prime spectrograph as well as data from the WISE survey, we have created a main sequence for the CLU survey. By analyzing how this main sequence behaves in local galaxies, we can better understand the relationship between current star formation rate and total galaxy stellar mass.

Coronagraphic Observations of Lunar Sodium

NASA Technical Reports Server (NTRS)

Hunten, D. M.; Sprague, A. L.

1997-01-01

The core of the proposed work was to observe the lunar sodium atmosphere with our classical Lyot coronagraph and specially-built grating spectrograph on Mount Lemmon, a 9400-foot peak about an hour's drive from Tucson. It is optimized for low scattered light and for observing from the Moon's limb to an altitude of approx. 1 lunar radius. The grating has 600 lines/mm and a blaze angle of 49 deg, and is used with a somewhat wide slit at a resolving power of about 5000. It is called DARRK for the initials of the people who designed it. The rejection of stray light from the Moon's disk is spectacularly good: when the sky is clear this light is absent right up to a few arcsec from the limb. We use an excellent 1024 by 1024 pixel CCD camera, operated at -100 C; the exposures are 10 to 30 min. Data reduction is done with ERAF running on a Sun Sparcstation.

A virus-based single-enzyme nanoreactor

NASA Astrophysics Data System (ADS)

Comellas-Aragonès, Marta; Engelkamp, Hans; Claessen, Victor I.; Sommerdijk, Nico A. J. M.; Rowan, Alan E.; Christianen, Peter C. M.; Maan, Jan C.; Verduin, Benedictus J. M.; Cornelissen, Jeroen J. L. M.; Nolte, Roeland J. M.

2007-10-01

Most enzyme studies are carried out in bulk aqueous solution, at the so-called ensemble level, but more recently studies have appeared in which enzyme activity is measured at the level of a single molecule, revealing previously unseen properties. To this end, enzymes have been chemically or physically anchored to a surface, which is often disadvantageous because it may lead to denaturation. In a natural environment, enzymes are present in a confined reaction space, which inspired us to develop a generic method to carry out single-enzyme experiments in the restricted spatial environment of a virus capsid. We report here the incorporation of individual horseradish peroxidase enzymes in the inner cavity of a virus, and describe single-molecule studies on their enzymatic behaviour. These show that the virus capsid is permeable for substrate and product and that this permeability can be altered by changing pH.

PISCES High Contrast Integral Field Spectrograph Simulations and Data Reduction Pipeline

NASA Technical Reports Server (NTRS)

Llop Sayson, Jorge Domingo; Memarsadeghi, Nargess; McElwain, Michael W.; Gong, Qian; Perrin, Marshall; Brandt, Timothy; Grammer, Bryan; Greeley, Bradford; Hilton, George; Marx, Catherine

2015-01-01

The PISCES (Prototype Imaging Spectrograph for Coronagraphic Exoplanet Studies) is a lenslet array based integral field spectrograph (IFS) designed to advance the technology readiness of the WFIRST (Wide Field Infrared Survey Telescope)-AFTA (Astrophysics Focused Telescope Assets) high contrast Coronagraph Instrument. We present the end to end optical simulator and plans for the data reduction pipeline (DRP). The optical simulator was created with a combination of the IDL (Interactive Data Language)-based PROPER (optical propagation) library and Zemax (a MatLab script), while the data reduction pipeline is a modified version of the Gemini Planet Imager's (GPI) IDL pipeline. The simulations of the propagation of light through the instrument are based on Fourier transform algorithms. The DRP enables transformation of the PISCES IFS data to calibrated spectral data cubes.

The Hubble Spectroscopic Legacy Archive

NASA Astrophysics Data System (ADS)

Peeples, Molly S.; Tumlinson, Jason; Fox, Andrew; Aloisi, Alessandra; Ayres, Thomas R.; Danforth, Charles; Fleming, Scott W.; Jenkins, Edward B.; Jedrzejewski, Robert I.; Keeney, Brian A.; Oliveira, Cristina M.

2016-01-01

With no future space ultraviolet instruments currently planned, the data from the UV spectrographs aboard the Hubble Space Telescope have a legacy value beyond their initial science goals. The Hubble Spectroscopic Legacy Archive will provide to the community new science-grade combined spectra for all publicly available data obtained by the Cosmic Origins Spectrograph (COS) and the Space Telescope Imaging Spectrograph (STIS). These data will be packaged into "smart archives" according to target type and scientific themes to facilitate the construction of archival samples for common science uses. A new "quick look" capability will make the data easy for users to quickly access, assess the quality of, and download for archival science starting in Cycle 24, with the first generation of these products for the FUV modes of COS available online via MAST in early 2016.

Sensitive far uv spectrograph with a multispectral element microchannel plate detector for rocket-borne astronomy.

PubMed

Weiser, H; Vitz, R C; Moos, H W; Weinstein, A

1976-12-01

An evacuated high transmission prism spectrograph using a microchannel plate detection system with resistive strip readout was flown behind a precision pointing telescope on a sounding rocket. The construction, preparation, flight performance, and calibration stability of the system are discussed. Despite the adverse environmental conditions associated with sounding rocket flights, the microchannel detector system performed well. Far uv spectra (1160-1750 A) of stellar and planetary objects were obtained; spectral features with fluxes as low as 0.06 photons cm(-2) sec(-1) were detectable. This was achieved by operating the plates at lower than normal gains, using sensitive pulse counting electronics with both upper and lower limit discriminators, and maintaining the spectrograph and detector at a pressure of ~10(-6) Torr until reaching altitude.

The Extreme Ultraviolet Spectrograph Sounding Rocket Payload: Recent Modifications for Planetary Observations in the EUV/FUV

NASA Technical Reports Server (NTRS)

Slater, David C.; Stern, S. Alan; Scherrer, John; Cash, Webster; Green, James C.; Wilkinson, Erik

1995-01-01

We report on the status of modifications to an existing extreme ultraviolet (EUV) telescope/spectrograph sounding rocket payload for planetary observations in the 800 - 1200 A wavelength band. The instrument is composed of an existing Wolter Type 2 grazing incidence telescope, a newly built 0.4-m normal incidence Rowland Circle spectrograph, and an open-structure resistive-anode microchannel plate detector. The modified payload has successfully completed three NASA sounding rocket flights within 1994-1995. Future flights are anticipated for additional studies of planetary and cometary atmospheres and interstellar absorption. A detailed description of the payload, along with the performance characteristics of the integrated instrument are presented. In addition, some preliminary flight results from the above three missions are also presented.

EXPRES: a next generation RV spectrograph in the search for earth-like worlds

NASA Astrophysics Data System (ADS)

Jurgenson, C.; Fischer, D.; McCracken, T.; Sawyer, D.; Szymkowiak, A.; Davis, A.; Muller, G.; Santoro, F.

2016-08-01

The EXtreme PREcision Spectrograph (EXPRES) is an optical fiber fed echelle instrument being designed and built at the Yale Exoplanet Laboratory to be installed on the 4.3-meter Discovery Channel Telescope operated by Lowell Observatory. The primary science driver for EXPRES is to detect Earth-like worlds around Sun-like stars. With this in mind, we are designing the spectrograph to have an instrumental precision of 15 cm/s so that the on-sky measurement precision (that includes modeling for RV noise from the star) can reach to better than 30 cm/s. This goal places challenging requirements on every aspect of the instrument development, including optomechanical design, environmental control, image stabilization, wavelength calibration, and data analysis. In this paper we describe our error budget, and instrument optomechanical design.

VizieR Online Data Catalog: Astrometry and photometry of nearby white dwarfs (Limoges+, 2013)

NASA Astrophysics Data System (ADS)

Limoges, M.-M.; Lepine, S.; Bergeron, P.

2014-06-01

Optical spectra have been obtained with the Steward Observatory 2.3m telescope and the B&C spectrograph on 2009 May, 2009 Nov, 2010 July, with the NOAO Mayall 4m telescope and the RC spectrograph on 2009 Aug, 2010 Mar, 2010 Oct, and with the NOAO 2.1m and the Goldcam spectrograph on 2009 Dec, 2010 May. The adopted configurations allow a spectral coverage of λλ3800-5600 and λλ3800-6700, at an intermediate resolution of ~6ÅFWHM. Spectra were first obtained at low signal-to-noise ratio (S/N ~25). As a result of our spectroscopic observations, 193 newly identified white dwarfs from the SUPERBLINK catalog have been spectroscopically confirmed (Tables 3 and 4). (3 data files).

Space telescope scientific instruments

NASA Technical Reports Server (NTRS)

Leckrone, D. S.

1979-01-01

The paper describes the Space Telescope (ST) observatory, the design concepts of the five scientific instruments which will conduct the initial observatory observations, and summarizes their astronomical capabilities. The instruments are the wide-field and planetary camera (WFPC) which will receive the highest quality images, the faint-object camera (FOC) which will penetrate to the faintest limiting magnitudes and achieve the finest angular resolution possible, and the faint-object spectrograph (FOS), which will perform photon noise-limited spectroscopy and spectropolarimetry on objects substantially fainter than those accessible to ground-based spectrographs. In addition, the high resolution spectrograph (HRS) will provide higher spectral resolution with greater photometric accuracy than previously possible in ultraviolet astronomical spectroscopy, and the high-speed photometer will achieve precise time-resolved photometric observations of rapidly varying astronomical sources on short time scales.

CARMENES instrument overview

NASA Astrophysics Data System (ADS)

Quirrenbach, A.; Amado, P. J.; Caballero, J. A.; Mundt, R.; Reiners, A.; Ribas, I.; Seifert, W.; Abril, M.; Aceituno, J.; Alonso-Floriano, F. J.; Ammler-von Eiff, M.; Antona Jiménez, R.; Anwand-Heerwart, H.; Azzaro, M.; Bauer, F.; Barrado, D.; Becerril, S.; Béjar, V. J. S.; Benítez, D.; Berdiñas, Z. M.; Cárdenas, M. C.; Casal, E.; Claret, A.; Colomé, J.; Cortés-Contreras, M.; Czesla, S.; Doellinger, M.; Dreizler, S.; Feiz, C.; Fernández, M.; Galadí, D.; Gálvez-Ortiz, M. C.; García-Piquer, A.; García-Vargas, M. L.; Garrido, R.; Gesa, L.; Gómez Galera, V.; González Álvarez, E.; González Hernández, J. I.; Grözinger, U.; Guàrdia, J.; Guenther, E. W.; de Guindos, E.; Gutiérrez-Soto, J.; Hagen, H.-J.; Hatzes, A. P.; Hauschildt, P. H.; Helmling, J.; Henning, T.; Hermann, D.; Hernández Castaño, L.; Herrero, E.; Hidalgo, D.; Holgado, G.; Huber, A.; Huber, K. F.; Jeffers, S.; Joergens, V.; de Juan, E.; Kehr, M.; Klein, R.; Kürster, M.; Lamert, A.; Lalitha, S.; Laun, W.; Lemke, U.; Lenzen, R.; López del Fresno, Mauro; López Martí, B.; López-Santiago, J.; Mall, U.; Mandel, H.; Martín, E. L.; Martín-Ruiz, S.; Martínez-Rodríguez, H.; Marvin, C. J.; Mathar, R. J.; Mirabet, E.; Montes, D.; Morales Muñoz, R.; Moya, A.; Naranjo, V.; Ofir, A.; Oreiro, R.; Pallé, E.; Panduro, J.; Passegger, V.-M.; Pérez-Calpena, A.; Pérez Medialdea, D.; Perger, M.; Pluto, M.; Ramón, A.; Rebolo, R.; Redondo, P.; Reffert, S.; Reinhardt, S.; Rhode, P.; Rix, H.-W.; Rodler, F.; Rodríguez, E.; Rodríguez-López, C.; Rodríguez-Pérez, E.; Rohloff, R.-R.; Rosich, A.; Sánchez-Blanco, E.; Sánchez Carrasco, M. A.; Sanz-Forcada, J.; Sarmiento, L. F.; Schäfer, S.; Schiller, J.; Schmidt, C.; Schmitt, J. H. M. M.; Solano, E.; Stahl, O.; Storz, C.; Stürmer, J.; Suárez, J. C.; Ulbrich, R. G.; Veredas, G.; Wagner, K.; Winkler, J.; Zapatero Osorio, M. R.; Zechmeister, M.; Abellán de Paco, F. J.; Anglada-Escudé, G.; del Burgo, C.; Klutsch, A.; Lizon, J. L.; López-Morales, M.; Morales, J. C.; Perryman, M. A. C.; Tulloch, S. M.; Xu, W.

2014-07-01

This paper gives an overview of the CARMENES instrument and of the survey that will be carried out with it during the first years of operation. CARMENES (Calar Alto high-Resolution search for M dwarfs with Exoearths with Near-infrared and optical Echelle Spectrographs) is a next-generation radial-velocity instrument under construction for the 3.5m telescope at the Calar Alto Observatory by a consortium of eleven Spanish and German institutions. The scientific goal of the project is conducting a 600-night exoplanet survey targeting ~ 300 M dwarfs with the completed instrument. The CARMENES instrument consists of two separate echelle spectrographs covering the wavelength range from 0.55 to 1.7 μm at a spectral resolution of R = 82,000, fed by fibers from the Cassegrain focus of the telescope. The spectrographs are housed in vacuum tanks providing the temperature-stabilized environments necessary to enable a 1 m/s radial velocity precision employing a simultaneous calibration with an emission-line lamp or with a Fabry-Perot etalon. For mid-M to late-M spectral types, the wavelength range around 1.0 μm (Y band) is the most important wavelength region for radial velocity work. Therefore, the efficiency of CARMENES has been optimized in this range. The CARMENES instrument consists of two spectrographs, one equipped with a 4k x 4k pixel CCD for the range 0.55 - 1.05 μm, and one with two 2k x 2k pixel HgCdTe detectors for the range from 0.95 - 1.7μm. Each spectrograph will be coupled to the 3.5m telescope with two optical fibers, one for the target, and one for calibration light. The front end contains a dichroic beam splitter and an atmospheric dispersion corrector, to feed the light into the fibers leading to the spectrographs. Guiding is performed with a separate camera; on-axis as well as off-axis guiding modes are implemented. Fibers with octagonal cross-section are employed to ensure good stability of the output in the presence of residual guiding errors. The fibers are continually actuated to reduce modal noise. The spectrographs are mounted on benches inside vacuum tanks located in the coudé laboratory of the 3.5m dome. Each vacuum tank is equipped with a temperature stabilization system capable of keeping the temperature constant to within +/-0.01°C over 24 hours. The visible-light spectrograph will be operated near room temperature, while the near-IR spectrograph will be cooled to ~ 140 K. The CARMENES instrument passed its final design review in February 2013. The MAIV phase is currently ongoing. First tests at the telescope are scheduled for early 2015. Completion of the full instrument is planned for the fall of 2015. At least 600 useable nights have been allocated at the Calar Alto 3.5m Telescope for the CARMENES survey in the time frame until 2018. A data base of M stars (dubbed CARMENCITA) has been compiled from which the CARMENES sample can be selected. CARMENCITA contains information on all relevant properties of the potential targets. Dedicated imaging, photometric, and spectroscopic observations are underway to provide crucial data on these stars that are not available in the literature.

AIDS: the frightening facts.

PubMed

Ryan, M

1986-01-01

Aquired Immune Deficiency Syndrome (AIDS) has succeeded in creating an unprecedented wave of panic among the Western public and some sections of the medical profession. Research clearly shows that the AIDS virus is transmissible in a number of ways: from man to woman and vice versa during sexual intercourse, through semen and possibly vaginal fluids; from mothers to their children through breast milk; through exchange of saliva (but not through just a casual kiss); and through blood and blood products. Far from being exclusive to homosexuals, studies in Europe have shown that female virus carriers can transmit AIDS to healthy men through sexual intercourse--the predominant means by which transmission appears to occur in Central Africa. Although cases of AIDS began being diagnosed in a few Central African countries at the beginning of the 1980s, at the same time as they were first being observed in Europe and North America, many commentators assumed that the virus originated in Africa. Yet, it is safe to say that the nature of the virus, let alone its origins, remains controversial among scientists and virologists. 1 supporter of the theory that the AIDS virus has African origins is Robert Gall of the US National Institute of Health (NIH). He is one of the co-discoverers of the virus, which he named HTLV3 (Human T-cell Lymphotropic Virus 3). The virus also was discovered at France's Pasteur Institute by Luc Montaigner, who called it LAV (Lymphadenpathy Associated Virus). Gallo named the virus as he did because he believes it to be related to a pair of other viruses, HTLV1 and HTLV2, which like the AIDS virus attack the body's immunity system. Unlike AIDS, these 2 viruses, do not destroy the T-cells but cause them to replicate into cancer tumors. In Gallo's view, HTLV1 has long been endemic to some parts of Africa, from where he believes it spread via the slave trade to other parts of the world. Montaigner does not agree. He denies that the AIDS virus is related to either HTLV1 or HTLV2, claiming that ist shape and behavior makes it closer to a group of viruses known as lenti-viruses, so called because they can lie dormant in an animal host for between 5-20 years before becoming active. Prior to the appearance of AIDS, lenti-viruses were hardly ever found in humans. Due to this controversy, the virus has been HTLV3/LAV by the scientific community. What is evident from studies of the disease in Africa, Europe, and the US, is that there are no easy remedies for this highly complex syndrome. Nor is it possible to generalize about it from 1 country to another, let alone 1 continent from another. The way the disease presents itself in Zaire is different from the way it presents itself in Uganda, and both are very different from the way it presents itself in Europe and the US. In Zaire, chronic diarrhea, tuberculosis, pneumonia, and cryptococcal meningitis could all be symptoms of the AIDS patient. AIDS is a recognized public health problem in a number of Central African countries. In those areas where the disease's presence has been confirmed, sexual promiscuity has been singled out as a high risk factor for its transmission. In all affected countries, health authorities are aware of the need to launch health education campaigns.

[Blood component donors and recipients as linked study objects in epidemiological population-based surveys].

PubMed

Garmaeva, T Ts; Kulikov, S M

2015-01-01

A population of hematological cancer patients as recipients of many blood components and that of donors of blood components and bone marrow are related to the common event of contamination with viruses of blood-borne infections; which occurs and is detectable during long-term treatment and follow-up. They share interaction traits and diverse communication mechanisms, which call for complex interrelated trials in both groups with a mandatory epidemiological evidenced-based investigation of all cases of posttransfusion hepatitis B and/or C. The identity of infection with hepatitis B and C viruses, human immunodeficiency virus, and their association should be simultaneously studied in the populations of both donors and recipients of blood components and bone marrow.

Research note: The isolation of a herpes virus from captive cranes with an inclusion body disease

USGS Publications Warehouse

Docherty, D.E.; Henning, D.J.

1980-01-01

A viral agent, identified as a herpesvirus and tentatively called 'inclusion body disease of cranes' (IBDC), was isolated from captive cranes involved in a die-off at the International Crane Foundation near Baraboo, Wisconsin. Preliminary animal susceptibility tests, based on experimental infections, suggested that White Pekin ducklings up to 17 days old and adult coots were susceptible to the IBDC virus whereas 16-day-old White Leghorn chicks and 64-day-old Muscovy ducks were not. No serum antibody to IBDC virus was detected in 95 wild sandhill cranes collected in Wisconsin or Indiana in 1976 and 1977. However, 9 of 11 captive cranes in the affected area at the ICF had antibody to this agent.

Viruses as Winners in the Game of Life.

PubMed

Cobián Güemes, Ana Georgina; Youle, Merry; Cantú, Vito Adrian; Felts, Ben; Nulton, James; Rohwer, Forest

2016-09-29

Viruses are the most abundant and the most diverse life form. In this meta-analysis we estimate that there are 4.80×10 31 phages on Earth. Further, 97% of viruses are in soil and sediment-two underinvestigated biomes that combined account for only ∼2.5% of publicly available viral metagenomes. The majority of the most abundant viral sequences from all biomes are novel. Our analysis drawing on all publicly available viral metagenomes observed a mere 257,698 viral genotypes on Earth-an unrealistically low number-which attests to the current paucity of viral metagenomic data. Further advances in viral ecology and diversity call for a shift of attention to previously ignored major biomes and careful application of verified methods for viral metagenomic analysis.

Artificial Virus as Trump-card to Resolve Exigencies in Targeted Gene Delivery.

PubMed

Ajithkumar, K C; Pramod, Kannissery

2018-01-01

Viruses are potent pathogens that can effectively deliver the genetic material to susceptible host cells. This capability is beneficially utilized to successfully deliver the genetic material. However, the use of virus mediated gene delivery is considered divisive, because the potentially replicable genomes recombine or integrate with the cell DNA resulting in immunogenicity, ranging from inflammation to death. Thus, the need for potentially effective non-viral gene delivery vehicles arises. Non-viral vectors, protein only particles and virus like particles (VLP) can be constructed which contain all the necessary functional moieties. These resemble viruses and are called artificial or synthetic virus. The artificial virus eliminates the disadvantages of viral vectors but retain the beneficial effects of the viruses. Need for further functionalization can be avoided by this approach because incorporation of requisite agents such as cell ligands, membrane active peptides, etc. into proteins is possible. The protein- DNA complexes resemble bacterial inclusion bodies. Nucleic acids influence conformation of protein units which subsequently result in cell uptake and finally to the cell nucleus. Such tunable systems mimic the activities of infected viruses and are used for the safe and effective delivery of drugs and genetic material in gene therapy. The versatility, stability and biocompatible nature of artificial virus along with high transfection efficacy have made it favorite for gene delivery purposes, in addition to being useful for various biomedical and drug delivery applications. Copyright© Bentham Science Publishers; For any queries, please email at epub@benthamscience.org.

HIV envelope glycoprotein imaged at high resolution | Center for Cancer Research

Cancer.gov

The outer surface of the human immunodeficiency virus (HIV) is surrounded by an envelope studded with spike-shaped glycoproteins called Env that help the deadly virus identify, bind, and infect cells. When unbound, Env exists in a “closed” conformational state. Upon binding with target cells, such as CD4+ T cells, the protein transitions to an “open” configuration. Given that Env is the only viral protein expressed on HIV’s surface, knowing its detailed structure—especially in the unbound state—may be critical for designing antibodies and vaccines against HIV.

Contrasting Life Strategies of Viruses that Infect Photo- and Heterotrophic Bacteria, as Revealed by Viral Tagging

PubMed Central

Deng, Li; Gregory, Ann; Yilmaz, Suzan; Poulos, Bonnie T.; Hugenholtz, Philip; Sullivan, Matthew B.

2012-01-01

ABSTRACT Ocean viruses are ubiquitous and abundant and play important roles in global biogeochemical cycles by means of their mortality, horizontal gene transfer, and manipulation of host metabolism. However, the obstacles involved in linking viruses to their hosts in a high-throughput manner bottlenecks our ability to understand virus-host interactions in complex communities. We have developed a method called viral tagging (VT), which combines mixtures of host cells and fluorescent viruses with flow cytometry. We investigated multiple viruses which infect each of two model marine bacteria that represent the slow-growing, photoautotrophic genus Synechococcus (Cyanobacteria) and the fast-growing, heterotrophic genus Pseudoalteromonas (Gammaproteobacteria). Overall, viral tagging results for viral infection were consistent with plaque and liquid infection assays for cyanobacterial myo-, podo- and siphoviruses and some (myo- and podoviruses) but not all (four siphoviruses) heterotrophic bacterial viruses. Virus-tagged Pseudoalteromonas organisms were proportional to the added viruses under varied infection conditions (virus-bacterium ratios), while no more than 50% of the Synechococcus organisms were virus tagged even at viral abundances that exceeded (5 to 10×) that of their hosts. Further, we found that host growth phase minimally impacts the fraction of virus-tagged Synechococcus organisms while greatly affecting phage adsorption to Pseudoalteromonas. Together these findings suggest that at least two contrasting viral life strategies exist in the oceans and that they likely reflect adaptation to their host microbes. Looking forward to the point at which the virus-tagging signature is well understood (e.g., for Synechococcus), application to natural communities should begin to provide population genomic data at the proper scale for predictively modeling two of the most abundant biological entities on Earth. PMID:23111870

ULTRAVIOLET SPECTROSCOPY OF RAPIDLY ROTATING SOLAR-MASS STARS: EMISSION-LINE REDSHIFTS AS A TEST OF THE SOLAR-STELLAR CONNECTION

DOE Office of Scientific and Technical Information (OSTI.GOV)

Linsky, Jeffrey L.; Bushinsky, Rachel; Ayres, Tom

2012-07-20

We compare high-resolution ultraviolet spectra of the Sun and thirteen solar-mass main-sequence stars with different rotational periods that serve as proxies for their different ages and magnetic field structures. In this, the second paper in the series, we study the dependence of ultraviolet emission-line centroid velocities on stellar rotation period, as rotation rates decrease from that of the Pleiades star HII314 (P{sub rot} = 1.47 days) to {alpha} Cen A (P{sub rot} = 28 days). Our stellar sample of F9 V to G5 V stars consists of six stars observed with the Cosmic Origins Spectrograph on the Hubble Space Telescopemore » (HST) and eight stars observed with the Space Telescope Imaging Spectrograph on HST. We find a systematic trend of increasing redshift with more rapid rotation (decreasing rotation period) that is similar to the increase in line redshift between quiet and plage regions on the Sun. The fastest-rotating solar-mass star in our study, HII314, shows significantly enhanced redshifts at all temperatures above log T = 4.6, including the corona, which is very different from the redshift pattern observed in the more slowly rotating stars. This difference in the redshift pattern suggests that a qualitative change in the magnetic-heating process occurs near P{sub rot} = 2 days. We propose that HII314 is an example of a solar-mass star with a magnetic heating rate too large for the physical processes responsible for the redshift pattern to operate in the same way as for the more slowly rotating stars. HII314 may therefore lie above the high activity end of the set of solar-like phenomena that is often called the 'solar-stellar connection'.« less

ESPRESSO: the ultimate rocky exoplanets hunter for the VLT

NASA Astrophysics Data System (ADS)

Mégevand, Denis; Zerbi, Filippo M.; Cabral, Alexandre; Di Marcantonio, Paolo; Amate, Manuel; Pepe, Francesco; Cristiani, Stefano; Rebolo, Rafael; Santos, Nuno C.; Dekker, Hans; Abreu, Manuel; Affolter, Michael; Avila, Gerardo; Baldini, Veronica; Bristow, Paul; Broeg, Christopher; Carvas, Pedro; Cirami, Roberto; Coelho, João.; Comari, Maurizio; Conconi, Paolo; Coretti, Igor; Cupani, Guido; D'Odorico, Valentina; De Caprio, Vincenzo; Delabre, Bernard; Figueira, Pedro; Fleury, Michel; Fragoso, Ana; Genolet, Ludovic; Gomes, Ricardo; Gonzalez Hernandez, Jonay; Hughes, Ian; Iwert, Olaf; Kerber, Florian; Landoni, Marco; Lima, Jorge; Lizon, Jean-Louis; Lovis, Christophe; Maire, Charles; Mannetta, Marco; Martins, Carlos; Moitinho, André; Molaro, Paolo; Monteiro, Manuel; Rasilla, José Luis; Riva, Marco; Santana Tschudi, Samuel; Santin, Paolo; Sosnowska, Danuta; Sousa, Sergio; Spanò, Paolo; Tenegi, Fabio; Toso, Giorgio; Vanzella, Eros; Viel, Matteo; Zapatero Osorio, Maria Rosa

2012-09-01

ESPRESSO, the VLT rocky exoplanets hunter, will combine the efficiency of modern echelle spectrograph with extreme radial-velocity precision. It will be installed at Paranal on ESO's VLT in order to achieve a gain of two magnitudes with respect to its predecessor HARPS, and the instrumental radial-velocity precision will be improved to reach 10 cm/s level. We have constituted a Consortium of astronomical research institutes to fund, design and build ESPRESSO on behalf of and in collaboration with ESO, the European Southern Observatory. The project has passed the preliminary design review in November 2011. The spectrograph will be installed at the so-called "Combined Coudé Laboratory" of the VLT, it will be linked to the four 8.2 meters Unit Telescopes (UT) through four optical "Coudé trains" and will be operated either with a single telescope or with up to four UTs. In exchange of the major financial and human effort the building Consortium will be awarded with guaranteed observing time (GTO), which will be invested in a common scientific program. Thanks to its characteristics and the ability of combining incoherently the light of 4 large telescopes, ESPRESSO will offer new possibilities in many fields of astronomy. Our main scientific objectives are, however, the search and characterization of rocky exoplanets in the habitable zone of quiet, near-by G to M-dwarfs, and the analysis of the variability of fundamental physical constants. In this paper, we present the ambitious scientific objectives, the capabilities of ESPRESSO, the technical solutions for the system and its subsystems, enlightening the main differences between ESPRESSO and its predecessors. The project aspects of this facility are also described, from the consortium and partnership structure to the planning phases and milestones.

An infrared high resolution silicon immersion grating spectrometer for airborne and space missions

NASA Astrophysics Data System (ADS)

Ge, Jian; Zhao, Bo; Powell, Scott; Jiang, Peng; Uzakbaiuly, Berik; Tanner, David

2014-08-01

Broad-band infrared (IR) spectroscopy, especially at high spectral resolution, is a largely unexplored area for the far IR (FIR) and submm wavelength region due to the lack of proper grating technology to produce high resolution within the very constrained volume and weight required for space mission instruments. High resolution FIR spectroscopy is an essential tool to resolve many atomic and molecular lines to measure physical and chemical conditions and processes in the environments where galaxy, star and planets form. A silicon immersion grating (SIG), due to its over three times high dispersion over a traditional reflective grating, offers a compact and low cost design of new generation IR high resolution spectrographs for space missions. A prototype SIG high resolution spectrograph, called Florida IR Silicon immersion grating spectromeTer (FIRST), has been developed at UF and was commissioned at a 2 meter robotic telescope at Fairborn Observatory in Arizona. The SIG with 54.74 degree blaze angle, 16.1 l/mm groove density, and 50x86 mm2 grating area has produced R=50,000 in FIRST. The 1.4-1.8 um wavelength region is completely covered in a single exposure with a 2kx2k H2RG IR array. The on-sky performance meets the science requirements for ground-based high resolution spectroscopy. Further studies show that this kind of SIG spectrometer with an airborne 2m class telescope such as SOFIA can offer highly sensitive spectroscopy with R~20,000-30,000 at 20 to 55 microns. Details about the on-sky measurement performance of the FIRST prototype SIG spectrometer and its predicted performance with the SOFIA 2.4m telescope are introduced.

Fingerprints in the Light

NASA Technical Reports Server (NTRS)

2005-01-01

[figure removed for brevity, see original site] Figure 1

This graph, or spectrum, shows the light from a dusty, distant galaxy located 11 billion light-years away. The galaxy is invisible to optical telescopes, but NASA's Spitzer Space Telescope was able to capture the light from it and dozens of other similar galaxies using heat-seeking infrared eyes.

Spectra are created when an instrument called a spectrograph spreads light out into its basic parts, like a prism turning sunlight into a rainbow. They contain the signatures, or 'fingerprints,' of molecules that contribute to an object's light.

In this case, the galaxy's spectrum reveals the fingerprint for silicate dust (large dip at right), a planetary building block like sand, only smaller. This particular fingerprint is important because it helped astronomers determine how far away the galaxy lies, or more specifically, how much the galaxy's light had stretched, or 'redshifted,' during its journey to Spitzer's eyes. Because the universe is expanding, a galaxy's light will shift toward reddish wavelengths as it moves away from us. This galaxy was found to have a redshift of 1.95, which means that its light took about 11 billion years to get here.

The presence of the silicate fingerprint is also significant because it implies that galaxies were ripe for planetary formation 11 billion years ago - back to a time when the universe was 3 billion years old. The universe is currently believed to be 13.5 billion years old. This is the furthest back in time that silicate dust has been detected around a galaxy.

These data were taken by Spitzer's infrared spectrograph in July, 2004.

Mutagenesis of Paramyxovirus Hemagglutinin-Neuraminidase Membrane-Proximal Stalk Region Influences Stability, Receptor Binding, and Neuraminidase Activity.

PubMed

Adu-Gyamfi, Emmanuel; Kim, Lori S; Jardetzky, Theodore S; Lamb, Robert A

2016-09-01

Paramyxoviridae consist of a large family of enveloped, negative-sense, nonsegmented single-stranded RNA viruses that account for a significant number of human and animal diseases. The fusion process for nearly all paramyxoviruses involves the mixing of the host cell plasma membrane and the virus envelope in a pH-independent fashion. Fusion is orchestrated via the concerted action of two surface glycoproteins: an attachment protein called hemagglutinin-neuraminidase (HN [also called H or G depending on virus type and substrate]), which acts as a receptor binding protein, and a fusion (F) protein, which undergoes a major irreversible refolding process to merge the two membranes. Recent biochemical evidence suggests that receptor binding by HN is dispensable for cell-cell fusion. However, factors that influence the stability and/or conformation of the HN 4-helix bundle (4HB) stalk have not been studied. Here, we used oxidative cross-linking as well as functional assays to investigate the role of the structurally unresolved membrane-proximal stalk region (MPSR) (residues 37 to 58) of HN in the context of headless and full-length HN membrane fusion promotion. Our data suggest that the receptor binding head serves to stabilize the stalk to regulate fusion. Moreover, we found that the MPSR of HN modulates receptor binding and neuraminidase activity without a corresponding regulation of F triggering. Paramyxoviruses require two viral membrane glycoproteins, the attachment protein variously called HN, H, or G and the fusion protein (F), to couple host receptor recognition to virus-cell fusion. The HN protein has a globular head that is attached to a membrane-anchored flexible stalk of ∼80 residues and has three activities: receptor binding, neuraminidase, and fusion activation. In this report, we have identified the functional significance of the membrane-proximal stalk region (MPSR) (HN, residues 37 to 56) of the paramyxovirus parainfluenza virus (PIV5), a region of the HN stalk that has not had its structure determined by X-ray crystallography. Our data suggest that the MPSR influences receptor binding and neuraminidase activity via an indirect mechanism. Moreover, the receptor binding head group stabilizes the 4HB stalk as part of the general mechanism to fine-tune F-activation. Copyright © 2016, American Society for Microbiology. All Rights Reserved.

Functional Interplay Between Murine Leukemia Virus Glycogag, Serinc5, and Surface Glycoprotein Governs Virus Entry, with Opposite Effects on Gammaretroviral and Ebolavirus Glycoproteins.

PubMed

Ahi, Yadvinder S; Zhang, Shu; Thappeta, Yashna; Denman, Audrey; Feizpour, Amin; Gummuluru, Suryaram; Reinhard, Bjoern; Muriaux, Delphine; Fivash, Matthew J; Rein, Alan

2016-11-22

Gammaretroviruses, such as murine leukemia viruses (MLVs), encode, in addition to the canonical Gag, Pol, and Env proteins that will form progeny virus particles, a protein called "glycogag" (glycosylated Gag). MLV glycogag contains the entire Gag sequence plus an 88-residue N-terminal extension. It has recently been reported that glycogag, like the Nef protein of HIV-1, counteracts the antiviral effects of the cellular protein Serinc5. We have found, in agreement with prior work, that glycogag strongly enhances the infectivity of MLVs with some Env proteins but not those with others. In contrast, however, glycogag was detrimental to MLVs carrying Ebolavirus glycoprotein. Glycogag could be replaced, with respect to viral infectivity, by the unrelated S2 protein of equine infectious anemia virus. We devised an assay for viral entry in which virus particles deliver the Cre recombinase into cells, leading to the expression of a reporter. Data from this assay showed that both the positive and the negative effects of glycogag and S2 upon MLV infectivity are exerted at the level of virus entry. Moreover, transfection of the virus-producing cells with a Serinc5 expression plasmid reduced the infectivity and entry capability of MLV carrying xenotropic MLV Env, particularly in the absence of glycogag. Conversely, Serinc5 expression abrogated the negative effects of glycogag upon the infectivity and entry capability of MLV carrying Ebolavirus glycoprotein. As Serinc5 may influence cellular phospholipid metabolism, it seems possible that all of these effects on virus entry derive from changes in the lipid composition of viral membranes. Many murine leukemia viruses (MLVs) encode a protein called "glycogag." The function of glycogag is not fully understood, but it can assist HIV-1 replication in the absence of the HIV-1 protein Nef under some circumstances. In turn, Nef counteracts the cellular protein Serinc5. Glycogag enhances the infectivity of MLVs with some but not all MLV Env proteins (which mediate viral entry into the host cell upon binding to cell surface receptors). We now report that glycogag acts by enhancing viral entry and that, like Nef, glycogag antagonizes Serinc5. Surprisingly, the effects of glycogag and Serinc5 upon the entry and infectivity of MLV particles carrying an Ebolavirus glycoprotein are the opposite of those observed with the MLV Env proteins. The unrelated S2 protein of equine infectious anemia virus (EIAV) is functionally analogous to glycogag in our experiments. Thus, three retroviruses (HIV-1, MLV, and EIAV) have independently evolved accessory proteins that counteract Serinc5. Copyright © 2016 Ahi et al.

Spectroscopic classification of Gaia17apq and Gaia17apv with Double Spectrograph on Palomar 200-inch telescope

NASA Astrophysics Data System (ADS)

Blagorodnova, N.; Adams, S.

2017-03-01

We report the classification of Gaia17apq and Gaia17apv (SN2017cao and SN2017cat), discovered by the Gaia ESA survey. The observations were performed on UT 2017-03-16 with the Double Spectrograph (DBSP; range 350-1000nm, spectral resolution R 4000) on Palomar 200-inch (P200) telescope.

Evolution of Instrumentation for Detection of the Raman Effect as Driven by Available Technologies and by Developing Applications

ERIC Educational Resources Information Center

Adar, Fran; Delhaye, Michel; DaSilva, Edouard

2007-01-01

The evolution of Raman instrumentation from the time of the initial report of the phenomenon in 1928 to 2006 is discussed. The first instruments were prism-based spectrographs using lenses for collimation and focusing and the 21st century instruments are also spectrographs, but they use CCD cameras. The Lippmann filter technology that appears to…

LUNAR SAMPLES - APOLLO XI - MSC

NASA Image and Video Library

1969-08-03

S69-40740 (July 1969) --- Dr. Ross Taylor (seated), Australian National University, and John Allen, Brown and Root-Northrop technician, review preliminary data from the optical emission spectrograph in the Spectrographic Laboratory of the Physical-Chemical Test Laboratory. Tests were being conducted on lunar surface material collected by astronauts Neil A. Armstrong and Edwin E. Aldrin Jr. during their lunar surface extravehicular activity on July 20, 1969.

Explosive Events in the Quiet Sun: Extreme Ultraviolet Imaging Spectroscopy Instrumentation and Observations

NASA Astrophysics Data System (ADS)

Rust, Thomas Ludwell

Explosive event is the name given to slit spectrograph observations of high spectroscopic velocities in solar transition region spectral lines. Explosive events show much variety that cannot yet be explained by a single theory. It is commonly believed that explosive events are powered by magnetic reconnection. The evolution of the line core appears to be an important indicator of which particular reconnection process is at work. The Multi-Order Solar Extreme Ultraviolet Spectrograph (MOSES) is a novel slitless spectrograph designed for imaging spectroscopy of solar extreme ultraviolet (EUV) spectral lines. The spectrograph design forgoes a slit and images instead at three spectral orders of a concave grating. The images are formed simultaneously so the resulting spatial and spectral information is co-temporal over the 20' x 10' instrument field of view. This is an advantage over slit spectrographs which build a field of view one narrow slit at a time. The cost of co-temporal imaging spectroscopy with the MOSES is increased data complexity relative to slit spectrograph data. The MOSES data must undergo tomographic inversion for recovery of line profiles. I use the unique data from the MOSES to study transition region explosive events in the He ii 304 A spectral line. I identify 41 examples of explosive events which include 5 blue shifted jets, 2 red shifted jets, and 10 bi-directional jets. Typical doppler speeds are approximately 100kms-1. I show the early development of one blue jet and one bi-directional jet and find no acceleration phase at the onset of the event. The bi-directional jets are interesting because they are predicted in models of Petschek reconnection in the transition region. I develop an inversion algorithm for the MOSES data and test it on synthetic observations of a bi-directional jet. The inversion is based on a multiplicative algebraic reconstruction technique (MART). The inversion successfully reproduces synthetic line profiles. I then use the inversion to study the time evolution of a bi-directional jet. The inverted line profiles show fast doppler shifted components and no measurable line core emission. The blue and red wings of the jet show increasing spatial separation with time.

VizieR Online Data Catalog: The AllWISE motion survey (AllWISE2) (Kirkpatrick+, 2016)

NASA Astrophysics Data System (ADS)

Kirkpatrick, J. D.; Kellogg, K.; Schneider, A. C.; Fajardo-Acosta, S.; Cushing, M. C.; Greco, J.; Mace, G. N.; Gelino, C. R.; Wright, E. L.; Eisenhardt, P. R. M.; Stern, D.; Faherty, J. K.; Sheppard, S. S.; Lansbury, G. B.; Logsdon, S. E.; Martin, E. C.; McLean, I. S.; Schurr, S. D.; Cutri, R. M.; Conrow, T.

2016-07-01

Observations for the spectroscopic follow-up of interesting AllWISE sources are listed in Table 4. Optical follow-up was conducted with the Palomar/Double Spectrograph on the Hale 5m telescope on Palomar Mountain, California, as our primary optical spectrograph in the northern hemisphere. It was used during the UT nights of 2014 January 26, February 23/24, April 22, June 25/26, July 21, September 27, October 24, and November 15 as well as 2015 June 08, September 07, and December 10. The Boller & Chivens Spectrograph (BCSpec) on the 2.5m Irenee duPont telescope at Las Campanas Observatory, Chile, served as our primary optical spectrograph in the southern hemisphere and was used on the UT nights of 2014 April 30, May 01-04, and November 16-20. Spectra of 10 objects were obtained on the UT nights of 2014 July 03-04 and 2015 December 07-10 at the European Southern Observatory (ESO) 3.58m New Technology Telescope (NTT) at La Silla, Chile. Spectra of seven objects were obtained on the UT nights of 2014 June 26, 2015 August 13, and 2015 December 05 with the Low Resolution Imaging Spectrometer (LRIS) at the 10m W. M. Keck Observatory on Mauna Kea, Hawaii. SpeX on the NASA 3m Infrared Telescope Facility (IRTF) on Mauna Kea, Hawaii, served as our primary near-infrared spectrograph in the northern hemisphere. The UT dates of observation were 2014 November 11 and 2015 January 27, May 08-09, June 27, July 03-05, and July 20. The Folded-port Infrared Echellette (FIRE) at the 6.5m Walter Baade Telescope at Las Campanas Observatory, Chile, served as our primary near-infrared spectrograph in the southern hemisphere. The UT dates of observation were 2014 August 07-09, 2015 February 08, and 2015 May 31. Several sources were also observed with the Near-Infrared Spectrometer (NIRSPEC) at the 10m W. M. Keck Observatory on Mauna Kea, Hawaii. The observation dates were UT 2014 April 12 and December 03, and 2015 July 03 and July 11. (9 data files).

Immersion Gratings for Infrared High-resolution Spectroscopy

NASA Astrophysics Data System (ADS)

Sarugaku, Yuki; Ikeda, Yuji; Kobayashi, Naoto; Kaji, Sayumi; Sukegawa, Takashi; Sugiyama, Shigeru; Nakagawa, Takao; Arasaki, Takayuki; Kondo, Sohei; Nakanishi, Kenshi; Yasui, Chikako; Kawakita, Hideyo

2016-10-01

High-resolution spectroscopy in the infrared wavelength range is essential for observations of minor isotopologues, such as HDO for water, and prebiotic organic molecules like hydrocarbons/P-bearing molecules because numerous vibrational molecular bands (including non-polar molecules) are located in this wavelength range. High spectral resolution enables us to detect weak lines without spectral line confusion. This technique has been widely used in planetary sciences, e.g., cometary coma (H2O, CO, and organic molecules), the martian atmosphere (CH4, CO2, H2O and HDO), and the upper atmosphere of gas giants (H3+ and organic molecules such as C2H6). Spectrographs with higher resolution (and higher sensitivity) still have a potential to provide a plenty of findings. However, because the size of spectrographs scales with the spectral resolution, it is difficult to realize it.Immersion grating (IG), which is a diffraction grating wherein the diffraction surface is immersed in a material with a high refractive index (n > 2), provides n times higher spectral resolution compared to a reflective grating of the same size. Because IG reduces the size of spectrograph to 1/n compared to the spectrograph with the same spectral resolution using a conventional reflective grating, it is widely acknowledged as a key optical device to realize compact spectrographs with high spectral resolution.Recently, we succeeded in fabricating a CdZnTe immersion grating with the theoretically predicted diffraction efficiency by machining process using an ultrahigh-precision five-axis processing machine developed by Canon Inc. Using the same technique, we completed a practical germanium (Ge) immersion grating with both a reflection coating on the grating surface and the an AR coating on the entrance surface. It is noteworthy that the wide wavelength range from 2 to 20 um can be covered by the two immersion gratings.In this paper, we present the performances and the applications of the immersion gratings, including the development of a long-NIR (2-5um) high-resolution (R=80,000) spectrograph with Ge-immersion grating, VINROUGE, which is a prototype for the TMT MIR instrument.

Viruses in the Anopheles A, Anopheles B, and Tete serogroups in the Orthobunyavirus genus (family Bunyaviridae) do not encode an NSs protein.

PubMed

Mohamed, Maizan; McLees, Angela; Elliott, Richard M

2009-08-01

Viruses in the genus Orthobunyavirus, family Bunyaviridae, have a genome comprising three segments (called L, M, and S) of negative-sense RNA. Serological studies have classified the >170 named virus isolates into 18 serogroups, with a few additional as yet ungrouped viruses. Until now, molecular studies and full-length S-segment nucleotide sequences were available for representatives of eight serogroups; in all cases, the S segment encodes two proteins, N (nucleocapsid) and NSs (nonstructural), in overlapping open reading frames (ORFs) that are translated from the same mRNA. The NSs proteins of Bunyamwera virus (BUNV) and California serogroup viruses have been shown to play a role in inhibiting host cell mRNA and protein synthesis, thereby preventing induction of interferon (IFN). We have determined full-length sequences of the S segments of representative viruses in the Anopheles A, Anopheles B, and Tete serogroups, and we report here that these viruses do not show evidence of having an NSs ORF. In addition, these viruses have rather longer N proteins than those in the other serogroups. Most of the naturally occurring viruses that lack the NSs protein behaved like a recombinant BUNV with the NSs gene deleted in that they failed to prevent induction of IFN-beta mRNA. However, Tacaiuma virus (TCMV) in the Anopheles A serogroup inhibited IFN induction in a manner similar to that of wild-type BUNV, suggesting that TCMV has evolved an alternative mechanism, not involving a typical NSs protein, to antagonize the host innate immune response.

OPSO - The OpenGL based Field Acquisition and Telescope Guiding System

NASA Astrophysics Data System (ADS)

Škoda, P.; Fuchs, J.; Honsa, J.

2006-07-01

We present OPSO, a modular pointing and auto-guiding system for the coudé spectrograph of the Ondřejov observatory 2m telescope. The current field and slit viewing CCD cameras with image intensifiers are giving only standard TV video output. To allow the acquisition and guiding of very faint targets, we have designed an image enhancing system working in real time on TV frames grabbed by BT878-based video capture card. Its basic capabilities include the sliding averaging of hundreds of frames with bad pixel masking and removal of outliers, display of median of set of frames, quick zooming, contrast and brightness adjustment, plotting of horizontal and vertical cross cuts of seeing disk within given intensity range and many more. From the programmer's point of view, the system consists of three tasks running in parallel on a Linux PC. One C task controls the video capturing over Video for Linux (v4l2) interface and feeds the frames into the large block of shared memory, where the core image processing is done by another C program calling the OpenGL library. The GUI is, however, dynamically built in Python from XML description of widgets prepared in Glade. All tasks are exchanging information by IPC calls using the shared memory segments.

Measuring airborne components of seismic body vibrations in a Middle-Asian sand-dwelling Insectivora species, the piebald shrew (Diplomesodon pulchellum).

PubMed

Volodin, Ilya A; Zaytseva, Alexandra S; Ilchenko, Olga G; Volodina, Elena V; Chebotareva, Anastasia L

2012-08-15

Self-produced seismic vibrations have been found for some subterranean rodents but have not been reported for any Insectivora species, although seismic sensitivity has been confirmed for blind sand-dwelling chrysochlorid golden moles. Studying the vocal behaviour of captive piebald shrews, Diplomesodon pulchellum, we documented vibrations, apparently generated by the whole-body wall muscles, from 11 (5 male, 6 female) of 19 animals, placed singly on a drum membrane. The airborne waves of the vibratory drumming were digitally recorded and then analysed spectrographically. The mean frequency of vibration was 160.5 Hz. This frequency matched the periodicity of the deep sinusoidal frequency modulation (159.4 Hz) found in loud screech calls of the same subjects. The body vibration was not related to thermoregulation, hunger-related depletion of energy resources or fear, as it was produced by well-fed, calm animals, at warm ambient temperatures. We hypothesize that in the solitary, nocturnal, digging desert piebald shrew, body vibrations may be used for seismic exploration of substrate density, to avoid energy-costly digging of packed sand for burrowing and foraging. At the same time, the piercing quality of screech calls due to the deep sinusoidal frequency modulation, matching the periodicity of body vibration, may be important for agonistic communication in this species.

The effect of bovine BST2A1 on the release and cell-to-cell transmission of retroviruses.

PubMed

Liang, Zhibin; Zhang, Yang; Song, Jie; Zhang, Hui; Zhang, Suzhen; Li, Yue; Tan, Juan; Qiao, Wentao

2017-09-06

Human BST2 (hBST2, also called Tetherin) is a host restriction factor that blocks the release of various enveloped viruses. BST2s from different mammals also possess antiviral activity. Bovine BST2s (bBST2s), bBST2A1 and bBST2A2, reduce production of cell-free bovine leukemia virus (BLV) and vesicular stomatitis virus (VSV). However, the effect of bBST2 on other retroviruses remains unstudied. Here, we studied the antiviral activity of wildtype and mutant bBST2A1 proteins on retroviruses including human immunodeficiency virus type 1 (HIV-1), prototypic foamy virus (PFV), bovine foamy virus (BFV) and bovine immunodeficiency virus (BIV). The results showed that wildtype bBST2A1 suppressed the release of HIV-1, PFV and BFV. We also generated bBST2A1 mutants, and found that GPI anchor and dimerization, but not glycosylation, are essential for antiviral activity of bBST2A1. Moreover, unlike hBST2, bBST2A1 displayed no inhibitory effect on cell-to-cell transmission of PFV, BFV and BIV. Our data suggested that bBST2A1 inhibited retrovirus release, however, had no effect on cell-to-cell transmission of retroviruses.

Nipah encephalitis - an update.

PubMed

Sherrini, B A; Chong, T T

2014-08-01

Between September 1998 to May 1999, Malaysia and Singapore were hit by an outbreak of fatal encephalitis caused by a novel virus from the paramyxovirus family. This virus was subsequently named as Nipah virus, after the Sungei Nipah village in Negeri Sembilan, where the virus was first isolated. The means of transmission was thought to be from bats-topigs and subsequently pigs-to-human. Since 2001, almost yearly outbreak of Nipah encephalitis has been reported from Bangladesh and West Bengal, India. These outbreaks were characterized by direct bats-to-human, and human-to-human spread of infection. Nipah virus shares many similar characteristics to Hendra virus, first isolated in an outbreak of respiratory illness involving horses in Australia in 1994. Because of their homology, a new genus called Henipavirus (Hendra + Nipah) was introduced. Henipavirus infection is a human disease manifesting most often as acute encephalitis (which may be relapsing or late-onset) or pneumonia, with a high mortality rate. Pteropus bats act as reservoir for the virus, which subsequently lead to human spread. Transmission may be from consumption of food contaminated by bats secretion, contact with infected animals, or human-to-human spread. With wide geographical distribution of Pteropus bats, Henipavirus infection has become an important emerging human infection with worldwide implication.

Neuraminidase Subtyping of Avian Influenza Viruses with PrimerHunter-Designed Primers and Quadruplicate Primer Pools

PubMed Central

Huang, Yanyan; Khan, Mazhar; Măndoiu, Ion I.

2013-01-01

We have previously developed a software package called PrimerHunter to design primers for PCR-based virus subtyping. In this study, 9 pairs of primers were designed with PrimerHunter and successfully used to differentiate the 9 neuraminidase (NA) genes of avian influenza viruses (AIVs) in multiple PCR-based assays. Furthermore, primer pools were designed and successfully used to decrease the number of reactions needed for NA subtyping from 9 to 4. The quadruplicate primer-pool method is cost-saving, and was shown to be suitable for the NA subtyping of both cultured AIVs and uncultured AIV swab samples. The primers selected for this study showed excellent sensitivity and specificity in NA subtyping by RT-PCR, SYBR green-based Real-time PCR and Real-time RT-PCR methods. AIV RNA of 2 to 200 copies (varied by NA subtypes) could be detected by these reactions. No unspecific amplification was displayed when detecting RNAs of other avian infectious viruses such as Infectious bronchitis virus, Infectious bursal disease virus and Newcastle disease virus. In summary, this study introduced several sensitive and specific PCR-based assays for NA subtyping of AIVs and also validated again the effectiveness of the PrimerHunter tool for the design of subtyping primers. PMID:24312367

Alfalfa mosaic virus replicase proteins, P1 and P2, localize to the tonoplast in the presence of virus RNA

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ibrahim, Amr; Present address: Genomics Facility, Agricultural Genetic Engineering Research Institute, Agricultural Research Center, Giza 12619; Hutchens, Heather M.

2012-11-25

To identify the virus components important for assembly of the Alfalfa mosaic virus replicase complex, we used live cell imaging of Arabidopsis thaliana protoplasts that expressed various virus cDNAs encoding native and GFP-fusion proteins of P1 and P2 replicase proteins and full-length virus RNAs. Expression of P1-GFP alone resulted in fluorescent vesicle-like bodies in the cytoplasm that colocalized with FM4-64, an endocytic marker, and RFP-AtVSR2, RabF2a/Rha1-mCherry, and RabF2b/Ara7-mCherry, all of which localize to multivesicular bodies (MVBs), which are also called prevacuolar compartments, that mediate traffic to the lytic vacuole. GFP-P2 was driven from the cytosol to MVBs when expressed withmore » P1 indicating that P1 recruited GFP-P2. P1-GFP localized on the tonoplast, which surrounds the vacuole, in the presence of infectious virus RNA, replication competent RNA2, or P2 and replication competent RNA1 or RNA3. This suggests that a functional replication complex containing P1, P2, and a full-length AMV RNA assembles on MVBs to traffic to the tonoplast.« less

Designing the optimal semi-warm NIR spectrograph for SALT via detailed thermal analysis

NASA Astrophysics Data System (ADS)

Wolf, Marsha J.; Sheinis, Andrew I.; Mulligan, Mark P.; Wong, Jeffrey P.; Rogers, Allen

2008-07-01

The near infrared (NIR) upgrade to the Robert Stobie Spectrograph (RSS) on the Southern African Large Telescope (SALT), RSS/NIR, extends the spectral coverage of all modes of the optical spectrograph. The RSS/NIR is a low to medium resolution spectrograph with broadband, spectropolarimetric, and Fabry-Perot imaging capabilities. The optical and NIR arms can be used simultaneously to extend spectral coverage from 3200 Å to approximately 1.6 μm. Both arms utilize high efficiency volume phase holographic gratings via articulating gratings and cameras. The NIR camera incorporates a HAWAII-2RG detector with an Epps optical design consisting of 6 spherical elements and providing subpixel rms image sizes of 7.5 +/- 1.0 μm over all wavelengths and field angles. The NIR spectrograph is semi-warm, sharing a common slit plane and partial collimator with the optical arm. A pre-dewar, cooled to below ambient temperature, houses the final NIR collimator optic, the grating/Fabry-Perot etalon, the polarizing beam splitter, and the first three camera optics. The last three camera elements, blocking filters, and detector are housed in a cryogenically cooled dewar. The semi-warm design concept has long been proposed as an economical way to extend optical instruments into the NIR, however, success has been very limited. A major portion of our design effort entails a detailed thermal analysis using non-sequential ray tracing to interactively guide the mechanical design and determine a truly realizable long wavelength cutoff over which astronomical observations will be sky-limited. In this paper we describe our thermal analysis, design concepts for the staged cooling scheme, and results to be incorporated into the overall mechanical design and baffling.

Far-ultraviolet Spectroscopy of Recent Comets with the Cosmic Origins Spectrograph on the Hubble Space Telescope

NASA Astrophysics Data System (ADS)

Feldman, Paul D.; Weaver, Harold A.; A’Hearn, Michael F.; Combi, Michael R.; Dello Russo, Neil

2018-05-01

Since its launch in 1990, the Hubble Space Telescope (HST) has served as a platform with unique capabilities for remote observations of comets in the far-ultraviolet region of the spectrum. Successive generations of imagers and spectrographs have seen large advances in sensitivity and spectral resolution enabling observations of the diverse properties of a representative number of comets during the past 25 years. To date, four comets have been observed in the far-ultraviolet by the Cosmic Origins Spectrograph (COS), the last spectrograph to be installed in HST, in 2009: 103P/Hartley 2, C/2009 P1 (Garradd), C/2012 S1 (ISON), and C/2014 Q2 (Lovejoy). COS has unprecedented sensitivity, but limited spatial information in its 2.″5 diameter circular aperture, and our objective was to determine the CO production rates from measurements of the CO Fourth Positive system in the spectral range of 1400–1700 Å. In the two brightest comets, 19 bands of this system were clearly identified. The water production rates were derived from nearly concurrent observations of the OH (0,0) band at 3085 Å by the Space Telescope Imaging Spectrograph. The derived CO/{{{H}}}2{{O}} production rate ratio ranged from ∼0.3% for Hartley 2 to ∼22% for Garradd. In addition, strong partially resolved emission features due to multiplets of S I, centered at 1429 Å and 1479 Å, and of C I at 1561 Å and 1657 Å, were observed in all four comets. Weak emission from several lines of the {{{H}}}2 Lyman band system, excited by solar Lyα and Lyβ pumped fluorescence, were detected in comet Lovejoy.

Rapid detection of European orthobunyaviruses by reverse transcription loop-mediated isothermal amplification assays.

PubMed

Camp, Jeremy V; Nowotny, Norbert

2016-10-01

The development of reverse transcriptase loop-mediated isothermal amplification (RT-LAMP) assays are described herein for the detection of two orthobunyaviruses (Bunyaviridae), which represent the two main serogroups found in mosquitoes in Central Europe. The RT-LAMP assays were optimized for the detection of Ťahyňa virus (a California encephalitis group virus found in Aedes sp or Ochlerotatus sp mosquitoes) and Batai virus (also called Čalovo virus, a Bunyamwera group virus found in Anopheles maculipennis s.l. mosquitoes) nucleic acid using endemic European virus isolates. The sensitivity of the RT-LAMP assays was determined to be comparable to that of conventional tests, with a limit of detection<0.1 pfu per reaction. The assays can be performed in 60min under isothermal conditions using very simple equipment. Furthermore, it was possible to proceed with the assays without nucleic acid extraction, albeit at a 100-fold loss of sensitivity. The RT-LAMP assays are a sensitive, cost-efficient method for both arbovirus surveillance as well as diagnostic laboratories to detect the presence of these endemic orthobunyaviruses. Copyright © 2016 Elsevier B.V. All rights reserved.

What's Mono?

MedlinePlus

... mono? Have you ever heard of the "kissing disease"? If you said that it's mono, you're absolutely correct. But you don't get mono only from kissing. Infectious mononucleosis, called mono for short, is caused by the Epstein-Barr virus (EBV), which is a type of herpes ...

From human behavior to the spread of mobile phone viruses

NASA Astrophysics Data System (ADS)

Wang, Pu

Percolation theory was initiated some 50 years ago as a mathematical framework for the study of random physical processes such as the flow of a fluid through a disordered porous medium. It has been proved to be a remarkably rich theory, with applications from thermodynamic phase transitions to complex networks. In this dissertation percolation theory is used to study the diffusion process of mobile phone viruses. Some methodologies widely used in statistical physics are also applied to uncover the underlying statistical laws of human behavior and simulate the spread of mobile phone viruses in a large population. I find that while Bluetooth viruses can reach all susceptible handsets with time, they spread slowly due to human mobility, offering ample opportunities to deploy antiviral software. In contrast, viruses utilizing multimedia messaging services (MMS) could infect all users in hours, but currently a phase transition on the underlying call graph limits them to only a small fraction of the susceptible users. These results explain the lack of a major mobile virus breakout so far and predict that once a mobile operating system's market share reaches the phase transition point, viruses will pose a serious threat to mobile communications. These studies show how the large datasets and tools of statistical physics can be used to study some specific and important problems, such as the spread of mobile phone viruses.

Detectors for the James Webb Space Telescope near-infrared spectrograph

NASA Astrophysics Data System (ADS)

Rauscher, Bernard J.; Figer, Donald F.; Regan, Michael W.; Boeker, Torsten; Garnett, James; Hill, Robert J.; Bagnasco, Giorgio; Balleza, Jesus; Barney, Richard; Bergeron, Louis E.; Brambora, Clifford; Connelly, Joe; Derro, Rebecca; DiPirro, Michael J.; Doria-Warner, Christina; Ericsson, Aprille; Glazer, Stuart D.; Greene, Charles; Hall, Donald N.; Jacobson, Shane; Jakobsen, Peter; Johnson, Eric; Johnson, Scott D.; Krebs, Carolyn; Krebs, Danny J.; Lambros, Scott D.; Likins, Blake; Manthripragada, Sridhar; Martineau, Robert J.; Morse, Ernie C.; Moseley, Samuel H.; Mott, D. Brent; Muench, Theo; Park, Hongwoo; Parker, Susan; Polidan, Elizabeth J.; Rashford, Robert; Shakoorzadeh, Kamdin; Sharma, Rajeev; Strada, Paolo; Waczynski, Augustyn; Wen, Yiting; Wong, Selmer; Yagelowich, John; Zuray, Monica

2004-10-01

The Near-Infrared Spectrograph (NIRSpec) is the James Webb Space Telescope"s primary near-infrared spectrograph. NASA is providing the NIRSpec detector subsystem, which consists of the focal plane array, focal plane electronics, cable harnesses, and software. The focal plane array comprises two closely-butted λco ~ 5 μm Rockwell HAWAII-2RG sensor chip assemblies. After briefly describing the NIRSpec instrument, we summarize some of the driving requirements for the detector subsystem, discuss the baseline architecture (and alternatives), and presents some recent detector test results including a description of a newly identified noise component that we have found in some archival JWST test data. We dub this new noise component, which appears to be similar to classical two-state popcorn noise in many aspects, "popcorn mesa noise." We close with the current status of the detector subsystem development effort.

Detectors for the James Webb Space Telescope Near-Infrared Spectrograph

NASA Technical Reports Server (NTRS)

Rauscher, Bernard J.; Figer, Donald F.; Regan, Michael W.; Boeker, Torsten; Garnett, James; Hill, Robert J.; Bagnasco, Georgio; Balleza, Jesus; Barney, Richard; Bergeron, Louis E.

2004-01-01

The Near-Infrared Spectrograph (NIRSpec) is the James Webb Space Telescope's primary near-infrared spectrograph. NASA is providing the NIRSpec detector subsystem, which consists of the focal plane array, focal plane electronics, cable harnesses, and software. The focal plane array comprises two closely-butted lambda (sub co) approximately 5 micrometer Rockwell HAWAII- 2RG sensor chip assemblies. After briefly describing the NIRSpec instrument, we summarize some of the driving requirements for the detector subsystem, discuss the baseline architecture (and alternatives), and presents some recent detector test results including a description of a newly identified noise component that we have found in some archival JWST test data. We dub this new noise component, which appears to be similar to classical two-state popcorn noise in many aspects, "popcorn mesa noise." We close with the current status of the detector subsystem development effort.

Using an integral-field unit spectrograph to study radical species in cometary coma

NASA Astrophysics Data System (ADS)

Lewis, Benjamin; Pierce, Donna M.; Vaughan, Charles M.; Cochran, Anita

2015-01-01

We have observed several comets using an integral-field unit spectrograph (the George and Cynthia Mitchell Spectrograph) on the 2.7m Harlan J. Smith telescope at McDonald Observatory. Full-coma spectroscopic images were obtained for various radical species (C2, C3, CN, NH2). Various coma enhancements were used to identify and characterize coma morphological features. The azimuthal average profiles and the Haser model were used to determine production rates and possible parent molecules. Here, we present the work completed to date, and we compare our results to other comet taxonomic surveys. This work was funded by the National Science Foundation Graduate K-12 (GK-12) STEM Fellows program (Award No. DGE-0947419), NASA's Planetary Atmospheres program (Award No. NNX14AH18G), and the Fund for Astrophysical Research, Inc.

Using an integral-field unit spectrograph to study radical species in cometary coma

NASA Astrophysics Data System (ADS)

Lewis, Benjamin; Pierce, Donna; Cochran, Anita; Vaughan, Charles

2014-11-01

We have observed several comets using an integral-field unit spectrograph (the George and Cynthia Mitchell Spectrograph) on the 2.7m Harlan J. Smith telescope at McDonald Observatory. Full-coma spectroscopic images were obtained for various radical species (C2, C3, CN, NH2). Various coma enhancements were used to identify and characterize coma morphological features. The azimuthal average profiles and the Haser model were used to determine production rates and possible parent molecules. Here, we present the work completed to date, and we compare our results to other comet taxonomic surveys. This work was funded by the National Science Foundation Graduate K-12 (GK-12) STEM Fellows program (Award No. DGE-0947419), NASA’s Planetary Atmospheres program (Award No. NNX14AH18G), and the Fund for Astrophysical Research, Inc.

CARMENES: an overview six months after first light

NASA Astrophysics Data System (ADS)

Quirrenbach, A.; Amado, P. J.; Caballero, J. A.; Mundt, R.; Reiners, A.; Ribas, I.; Seifert, W.; Abril, M.; Aceituno, J.; Alonso-Floriano, F. J.; Anwand-Heerwart, H.; Azzaro, M.; Bauer, F.; Barrado, D.; Becerril, S.; Bejar, V. J. S.; Benitez, D.; Berdinas, Z. M.; Brinkmöller, M.; Cardenas, M. C.; Casal, E.; Claret, A.; Colomé, J.; Cortes-Contreras, M.; Czesla, S.; Doellinger, M.; Dreizler, S.; Feiz, C.; Fernandez, M.; Ferro, I. M.; Fuhrmeister, B.; Galadi, D.; Gallardo, I.; Gálvez-Ortiz, M. C.; Garcia-Piquer, A.; Garrido, R.; Gesa, L.; Gómez Galera, V.; González Hernández, J. I.; Gonzalez Peinado, R.; Grözinger, U.; Guàrdia, J.; Guenther, E. W.; de Guindos, E.; Hagen, H.-J.; Hatzes, A. P.; Hauschildt, P. H.; Helmling, J.; Henning, T.; Hermann, D.; Hernández Arabi, R.; Hernández Castaño, L.; Hernández Hernando, F.; Herrero, E.; Huber, A.; Huber, K. F.; Huke, P.; Jeffers, S. V.; de Juan, E.; Kaminski, A.; Kehr, M.; Kim, M.; Klein, R.; Klüter, J.; Kürster, M.; Lafarga, M.; Lara, L. M.; Lamert, A.; Laun, W.; Launhardt, R.; Lemke, U.; Lenzen, R.; Llamas, M.; Lopez del Fresno, M.; López-Puertas, M.; López-Santiago, J.; Lopez Salas, J. F.; Magan Madinabeitia, H.; Mall, U.; Mandel, H.; Mancini, L.; Marin Molina, J. A.; Maroto Fernández, D.; Martín, E. L.; Martín-Ruiz, S.; Marvin, C.; Mathar, R. J.; Mirabet, E.; Montes, D.; Morales, J. C.; Morales Muñoz, R.; Nagel, E.; Naranjo, V.; Nowak, G.; Palle, E.; Panduro, J.; Passegger, V. M.; Pavlov, A.; Pedraz, S.; Perez, E.; Pérez-Medialdea, D.; Perger, M.; Pluto, M.; Ramón, A.; Rebolo, R.; Redondo, P.; Reffert, S.; Reinhart, S.; Rhode, P.; Rix, H.-W.; Rodler, F.; Rodríguez, E.; Rodríguez López, C.; Rohloff, R. R.; Rosich, A.; Sanchez Carrasco, M. A.; Sanz-Forcada, J.; Sarkis, P.; Sarmiento, L. F.; Schäfer, S.; Schiller, J.; Schmidt, C.; Schmitt, J. H. M. M.; Schöfer, P.; Schweitzer, A.; Shulyak, D.; Solano, E.; Stahl, O.; Storz, C.; Tabernero, H. M.; Tala, M.; Tal-Or, L.; Ulbrich, R.-G.; Veredas, G.; Vico Linares, J. I.; Vilardell, F.; Wagner, K.; Winkler, J.; Zapatero Osorio, M.-R.; Zechmeister, M.; Ammler-von Eiff, M.; Anglada-Escudé, G.; del Burgo, C.; Garcia-Vargas, M. L.; Klutsch, A.; Lizon, J.-L.; Lopez-Morales, M.; Ofir, A.; Pérez-Calpena, A.; Perryman, M. A. C.; Sánchez-Blanco, E.; Strachan, J. B. P.; Stürmer, J.; Suárez, J. C.; Trifonov, T.; Tulloch, S. M.; Xu, W.

2016-08-01

The CARMENES instrument is a pair of high-resolution (R> 80,000) spectrographs covering the wavelength range from 0.52 to 1.71 μm, optimized for precise radial velocity measurements. It was installed and commissioned at the 3.5m telescope of the Calar Alto observatory in Southern Spain in 2015. The first large science program of CARMENES is a survey of 300 M dwarfs, which started on Jan 1, 2016. We present an overview of all subsystems of CARMENES (front end, fiber system, visible-light spectrograph, near-infrared spectrograph, calibration units, etalons, facility control, interlock system, instrument control system, data reduction pipeline, data flow, and archive), and give an overview of the assembly, integration, verification, and commissioning phases of the project. We show initial results and discuss further plans for the scientific use of CARMENES.

The Wide Integral Field Infrared Spectrograph (WIFIS): optomechanical design and development

NASA Astrophysics Data System (ADS)

Meyer, R. Elliot; Moon, Dae-Sik; Sivanandam, Suresh; Ma, Ke; Henderson, Chuck; Blank, Basil; Chou, Chueh-Yi; Jarvis, Miranda; Eikenberry, Stephen S.

2016-08-01

We present the optomechanical design and development of the Wide Integral Field Infrared Spectrograph (WIFIS). WIFIS will provide an unrivalled integral field size of 20"×50" for a near-infrared (0.9-1.7 μm) integral-field spectrograph at the 2.3-meter Steward Bok telescope. Its main optomechanical system consists of two assemblies: a room-temperature bench housing the majority of the optical components and a cryostat for a field-flattening lens, thermal blocking filter, and detector. Two additional optical subsystems will provide calibration functionality, telescope guiding, and off-axis optical imaging. WIFIS will be a highly competitive instrument for seeing-limited astronomical investigations of the dynamics and chemistry of extended objects in the near-infrared wavebands. WIFIS is expected to be commissioned during the end of 2016 with scientific operations beginning in 2017.

An echelle spectrograph for middle ultraviolet solar spectroscopy from rockets.

PubMed

Tousey, R; Purcell, J D; Garrett, D L

1967-03-01

An echelle grating spectrograph is ideal for use in a rocket when high resolution is required becaus itoccupies a minimum of space. The instrument described covers the range 4000-2000 A with a resolution of 0.03 A. It was designed to fit into the solar biaxial pointing-control section of an Aerobee-150 rocket. The characteristics of the spectrograph are illustrated with laboratory spectra of iron and carbon are sources and with solar spectra obtained during rocket flights in 1961 and 1964. Problems encountered in analyzing the spectra are discussed. The most difficult design problem was the elimination of stray light when used with the sun. Of the several methods investigated, the most effective was a predispersing system in the form of a zero-dispersion double monochromator. This was made compact by folding the beam four times.

GMTIFS: The Giant Magellan Telescope integral fields spectrograph and imager

NASA Astrophysics Data System (ADS)

Sharp, Rob; Bloxham, G.; Boz, R.; Bundy, D.; Davies, J.; Espeland, B.; Fordham, B.; Hart, J.; Herrald, N.; Nielsen, J.; Vaccarella, A.; Vest, C.; Young, P.; McGregor, P.

2016-08-01

GMTIFS is the first-generation adaptive optics integral-field spectrograph for the GMT, having been selected through a competitive review process in 2011. The GMTIFS concept is for a workhorse single-object integral-field spectrograph, operating at intermediate resolution (R 5,000 and 10,000) with a parallel imaging channel. The IFS offers variable spaxel scales to Nyquist sample the diffraction limited GMT PSF from λ 1-2.5 μm as well as a 50 mas scale to provide high sensitivity for low surface brightness objects. The GMTIFS will operate with all AO modes of the GMT (Natural guide star - NGSAO, Laser Tomography - LTAO, and, Ground Layer - GLAO) with an emphasis on achieving high sky coverage for LTAO observations. We summarize the principle science drivers for GMTIFS and the major design concepts that allow these goals to be achieved.

Quercetin as an Antiviral Agent Inhibits Influenza A Virus (IAV) Entry.

PubMed

Wu, Wenjiao; Li, Richan; Li, Xianglian; He, Jian; Jiang, Shibo; Liu, Shuwen; Yang, Jie

2015-12-25

Influenza A viruses (IAVs) cause seasonal pandemics and epidemics with high morbidity and mortality, which calls for effective anti-IAV agents. The glycoprotein hemagglutinin of influenza virus plays a crucial role in the initial stage of virus infection, making it a potential target for anti-influenza therapeutics development. Here we found that quercetin inhibited influenza infection with a wide spectrum of strains, including A/Puerto Rico/8/34 (H1N1), A/FM-1/47/1 (H1N1), and A/Aichi/2/68 (H3N2) with half maximal inhibitory concentration (IC50) of 7.756 ± 1.097, 6.225 ± 0.467, and 2.738 ± 1.931 μg/mL, respectively. Mechanism studies identified that quercetin showed interaction with the HA2 subunit. Moreover, quercetin could inhibit the entry of the H5N1 virus using the pseudovirus-based drug screening system. This study indicates that quercetin showing inhibitory activity in the early stage of influenza infection provides a future therapeutic option to develop effective, safe and affordable natural products for the treatment and prophylaxis of IAV infections.

Establishment of an attenuated strain of porcine parvovirus by serial passage at low temperature.

PubMed

Fujisaki, Y; Murakami, Y; Suzuki, H

1982-01-01

To prepare a live virus vaccine strain for the prevention of porcine parvovirus infection, the 90HS strain, isolated from the brain of a stillborn porcine fetus, was subjected to the first 45 serial passages in swine kidney established (ESK) cells of porcine kidney origin at 30-35 degrees C and to the 46th and later serial passages in the same cells as these at 32 degrees C. When swine were inoculated with the strain at the 38th passage level possessing such properties as expressed with rct/37+ and rct/40-, they presented viremia, virus discharge, and the transmission of virus to other swine. When swine were inoculated with the strain at the 54th and 55th passage level possessing such properties as expressed with rct/37- and rct/40-, they failed to exhibit viremia, virus discharge, and the transmission of virus to other swine, but retained for a long time hemagglutination-inhibiting antibody which had been produced after inoculation. A low virulent variant strain was obtained after 54 serial passages at low temperature. It was called the HT- strain.

Functional analysis of human foamy virus accessory reading frames.

PubMed Central

Baunach, G; Maurer, B; Hahn, H; Kranz, M; Rethwilm, A

1993-01-01

Foamy viruses belong to the retroviruses which possess a complex genome structure. The human foamy virus (HFV) isolate bears three open reading frames (the so-called bel genes) in the 3' region of the genome which have been reported to give rise to possibly six different proteins via alternative splicing (W. Muranyi and R. M. Flügel, J. Virol. 65:727-735, 1991). In order to analyze the requirements of these proteins for HFV replication in vitro, we constructed a set of single and combinatory bel gene mutants of an infectious molecular clone of HFV. The mutant which lacked the transacting activator, bel-1, was found to be replication incompetent. All other mutants replicated equally well and gave rise to comparable titers of infectious cell-free virus. When HFV proviruses were put under the control of a heterologous promoter (simian virus 40), none of the accessory gene products was found to be required for expression of structural (gag) proteins. There was no evidence for a posttranscriptional regulatory protein that is present in other complex retroviruses. Images PMID:8394455

Visualizing Ebolavirus Particles Using Single-Particle Interferometric Reflectance Imaging Sensor (SP-IRIS).

PubMed

Carter, Erik P; Seymour, Elif Ç; Scherr, Steven M; Daaboul, George G; Freedman, David S; Selim Ünlü, M; Connor, John H

2017-01-01

This chapter describes an approach for the label-free imaging and quantification of intact Ebola virus (EBOV) and EBOV viruslike particles (VLPs) using a light microscopy technique. In this technique, individual virus particles are captured onto a silicon chip that has been printed with spots of virus-specific capture antibodies. These captured virions are then detected using an optical approach called interference reflectance imaging. This approach allows for the detection of each virus particle that is captured on an antibody spot and can resolve the filamentous structure of EBOV VLPs without the need for electron microscopy. Capture of VLPs and virions can be done from a variety of sample types ranging from tissue culture medium to blood. The technique also allows automated quantitative analysis of the number of virions captured. This can be used to identify the virus concentration in an unknown sample. In addition, this technique offers the opportunity to easily image virions captured from native solutions without the need for additional labeling approaches while offering a means of assessing the range of particle sizes and morphologies in a quantitative manner.

PyEmir: Data Reduction Pipeline for EMIR, the GTC Near-IR Multi-Object Spectrograph

NASA Astrophysics Data System (ADS)

Pascual, S.; Gallego, J.; Cardiel, N.; Eliche-Moral, M. C.

2010-12-01

EMIR is the near-infrared wide-field camera and multi-slit spectrograph being built for Gran Telescopio Canarias. We present here the work being done on its data processing pipeline. PyEmir is based on Python and it will process automatically data taken in both imaging and spectroscopy mode. PyEmir is begin developed by the UCM Group of Extragalactic Astrophysics and Astronomical Instrumentation.

High-Speed Laser Imaging, Emission and Temperature Measurements of Explosions

DTIC Science & Technology

2006-09-01

of these optical fibers illuminated the entrance slit of a dedicated Ocean Optics model HR-2000 spectrograph. The seven spectrographs were modified...Hewlett-Packard). The spectral response of the system was calibrated using an ARC Model XS432 Xenon lamp. Time resolution is approximately 12...F FOROHAR 101 STRAUSS AVE INDIAN HEAD MD 20640-5035 1 NAVAL SURFACE WARFARE CTR CODE 920J R GUIRGUIS 101 STRAUSS AVE INDIAN

Spectroscopic classification of PS17chm with Double Spectrograph on Palomar 200-inch telescope

NASA Astrophysics Data System (ADS)

Blagorodnova, N.; Kupfer, T.; Burdge, K.; Kasliwal, M.; Adams, S.

2017-04-01

We report the classification of PS17chm, discovered by the by the Pan-STARRS Survey for Transients (see Chambers et al. 2016, arXiv:1612.05560, and http://pswww.ifa.hawaii.edu ). The observations were performed on UT 2017-04-19 with the Double Spectrograph (DBSP; range 350-1000nm, spectral resolution R 4000) on Palomar 200-inch (P200) telescope.

Semi-quantitative spectrographic analysis and rank correlation in geochemistry

USGS Publications Warehouse

Flanagan, F.J.

1957-01-01

The rank correlation coefficient, rs, which involves less computation than the product-moment correlation coefficient, r, can be used to indicate the degree of relationship between two elements. The method is applicable in situations where the assumptions underlying normal distribution correlation theory may not be satisfied. Semi-quantitative spectrographic analyses which are reported as grouped or partly ranked data can be used to calculate rank correlations between elements. ?? 1957.

GIANO and HARPS-N together: towards an Earth-mass detection instrument

NASA Astrophysics Data System (ADS)

Tozzi, A.; Oliva, E.; Iuzzolino, M.; Fini, L.; Puglisi, A.; Sozzi, M.; Falcini, G.; Carbonaro, L.; Ghedina, A.; Mercatelli, L.; Seemann, U.; Claudi, R.

2016-08-01

This article describes the works we are doing for modifying the interface between the high resolution infrared spectrograph GIANO (0.97-2.4 micron) and the TNG telescope, passing from a fiber feed configuration to the original design of a direct light-feeding from the telescope to the spectrograph. So doing the IR spectrograph, GIANO, will work in parallel to HARPS-N spectrometer (0.38-0.70 micron), the visible high resolution spectrograph, thanks to a new telescope interface based on a dichroic window that simultaneously feeds the two instrumentes: this is GIARPS (GIAno and haRPS). The scientific aims of this project are to improve the radial velocity accuracy achievable with GIANO, down to a goal of 1 m/s, the value necessary to detect Earth-mass planets on habitable orbits around late-M stars, to implement simultaneous observations with Harps-N and GIANO optimizing the study of planets around cool stars. The very broad wavelengths range is particularly important to discriminate false radial velocity signals caused by stellar activity. We therefore include several absorption cells with different mixtures of gases and a stabilized Fabry Perot cavity, necessary to have absorption lines over the 0.97-2.4 microns range covered by GIANO. The commissioning of GIARPS is scheduled by the end of 2016.

Multiplexing 32,000 spectra onto 8 detectors: the HARMONI field splitting, image slicing, and wavelength selecting optics

NASA Astrophysics Data System (ADS)

Tecza, Matthias; Thatte, Niranjan; Clarke, Fraser; Freeman, David; Kosmalski, Johan

2012-09-01

HARMONI, the High Angular Resolution Monolithic Optical & Near-infrared Integral field spectrograph is one of two first-light instruments for the European Extremely Large Telescope. Over a 256x128 pixel field-of-view HARMONI will simultaneously measure approximately 32,000 spectra. Each spectrum is about 4000 spectral pixels long, and covers a selectable part of the 0.47-2.45 μm wavelength range at resolving powers of either R≍4000, 10000, or 20000. All 32,000 spectra are imaged onto eight HAWAII4RG detectors using a multiplexing scheme that divides the input field into four sub-fields, each imaged onto one image slicer that in turn re-arranges a single sub-field into two long exit slits feeding one spectrograph each. In total we require eight spectrographs, each with one HAWAII4RG detector. A system of articulated and exchangeable fold-mirrors and VPH gratings allows one to select different spectral resolving powers and wavelength ranges of interest while keeping a fixed geometry between the spectrograph collimator and camera avoiding the need for an articulated grating and camera. In this paper we describe both the field splitting and image slicing optics as well as the optics that will be used to select both spectral resolving power and wavelength range.

The infrared imaging spectrograph (IRIS) for TMT: overview of innovative science programs

NASA Astrophysics Data System (ADS)

Wright, Shelley A.; Larkin, James E.; Moore, Anna M.; Do, Tuan; Simard, Luc; Adamkovics, Maté; Armus, Lee; Barth, Aaron J.; Barton, Elizabeth; Boyce, Hope; Cooke, Jeffrey; Cote, Patrick; Davidge, Timothy; Ellerbroek, Brent; Ghez, Andrea M.; Liu, Michael C.; Lu, Jessica R.; Macintosh, Bruce A.; Mao, Shude; Marois, Christian; Schoeck, Matthias; Suzuki, Ryuji; Tan, Jonathan C.; Treu, Tommaso; Wang, Lianqi; Weiss, Jason

2014-07-01

IRIS (InfraRed Imaging Spectrograph) is a first light near-infrared diffraction limited imager and integral field spectrograph being designed for the future Thirty Meter Telescope (TMT). IRIS is optimized to perform astronomical studies across a significant fraction of cosmic time, from our Solar System to distant newly formed galaxies (Barton et al. [1]). We present a selection of the innovative science cases that are unique to IRIS in the era of upcoming space and ground-based telescopes. We focus on integral field spectroscopy of directly imaged exoplanet atmospheres, probing fundamental physics in the Galactic Center, measuring 104 to 1010 M supermassive black hole masses, resolved spectroscopy of young star-forming galaxies (1 < z < 5) and first light galaxies (6 < z < 12), and resolved spectroscopy of strong gravitational lensed sources to measure dark matter substructure. For each of these science cases we use the IRIS simulator (Wright et al. [2], Do et al. [3]) to explore IRIS capabilities. To highlight the unique IRIS capabilities, we also update the point and resolved source sensitivities for the integral field spectrograph (IFS) in all five broadband filters (Z, Y, J, H, K) for the finest spatial scale of 0.004" per spaxel. We briefly discuss future development plans for the data reduction pipeline and quicklook software for the IRIS instrument suite.

[Design and analysis of a novel light visible spectrum imaging spectrograph optical system].

PubMed

Shen, Man-de; Li, Fei; Zhou, Li-bing; Li, Cheng; Ren, Huan-huan; Jiang, Qing-xiu

2015-02-01

A novel visible spectrum imaging spectrograph optical system was proposed based on the negative dispersion, the arbitrary phase modulation characteristics of diffractive optical element and the aberration correction characteristics of freeform optical element. The double agglutination lens was substituted by a hybrid refractive/diffractive lens based on the negative dispersion of diffractive optical element. Two freeform optical elements were used in order to correct some aberration based on the aberration correction characteristics of freeform optical element. An example and frondose design process were presented. When the design parameters were uniform, compared with the traditional system, the novel visible spectrum imaging spectrograph optical system's weight was reduced by 22.9%, the total length was reduced by 26.6%, the maximal diameter was reduced by 30.6%, and the modulation transfer function (MTF) in 1.0 field-of-view was improved by 0.35 with field-of-view improved maximally. The maximal distortion was reduced by 1.6%, the maximal longitudinal aberration was reduced by 56.4%, and the lateral color aberration was reduced by 59. 3%. From these data, we know that the performance of the novel system was advanced quickly and it could be used to put forward a new idea for modern visible spectrum imaging spectrograph optical system design.

Solar Imaging UV/EUV Spectrometers Using TVLS Gratings

NASA Technical Reports Server (NTRS)

Thomas, Roger J.

2003-01-01

It is a particular challenge to develop a stigmatic spectrograph for UV, EUV wavelengths since the very low normal-incidence reflectance of standard materials most often requires that the design be restricted to a single optical element which must simultaneously provide both reimaging and spectral dispersion. This problem has been solved in the past by the use of toroidal gratings with uniform line-spaced rulings (TULS). A number of solar extreme ultraviolet (EUV) spectrometers have been based on such designs, including SOHO/CDS, Solar-B/EIS, and the sounding rockets Solar Extreme ultraviolet Research Telescope and Spectrograph (SERTS) and Extreme Ultraviolet Normal Incidence Spectrograph (EUNIS). More recently, Kita, Harada, and collaborators have developed the theory of spherical gratings with varied line-space rulings (SVLS) operated at unity magnification, which have been flown on several astronomical satellite missions. We now combine these ideas into a spectrometer concept that puts varied-line space rulings onto toroidal gratings. Such TVLS designs are found to provide excellent imaging even at very large spectrograph magnifications and beam-speeds, permitting extremely high-quality performance in remarkably compact instrument packages. Optical characteristics of three new solar spectrometers based on this concept are described: SUMI and RAISE, two sounding rocket payloads, and NEXUS, currently being proposed as a Small-Explorer (SMEX) mission.

High-efficiency in situ resonant inelastic x-ray scattering (iRIXS) endstation at the Advanced Light Source

DOE PAGES

Qiao, Ruimin; Li, Qinghao; Zhuo, Zengqing; ...

2017-03-17

In this paper, an endstation with two high-efficiency soft x-ray spectrographs was developed at Beamline 8.0.1 of the Advanced Light Source, Lawrence Berkeley National Laboratory. The endstation is capable of performing soft x-ray absorption spectroscopy, emission spectroscopy, and, in particular, resonant inelastic soft x-ray scattering (RIXS). Two slit-less variable line-spacing grating spectrographs are installed at different detection geometries. The endstation covers the photon energy range from 80 to 1500 eV. For studying transition-metal oxides, the large detection energy window allows a simultaneous collection of x-ray emission spectra with energies ranging from the O K-edge to the Ni L-edge without movingmore » any mechanical components. The record-high efficiency enables the recording of comprehensive two-dimensional RIXS maps with good statistics within a short acquisition time. By virtue of the large energy window and high throughput of the spectrographs, partial fluorescence yield and inverse partial fluorescence yield signals could be obtained for all transition metal L-edges including Mn. Finally and moreover, the different geometries of these two spectrographs (parallel and perpendicular to the horizontal polarization of the beamline) provide contrasts in RIXS features with two different momentum transfers.« less

First-generation instrumentation for the Discovery Channel Telescope

NASA Astrophysics Data System (ADS)

Bida, Thomas A.; Dunham, Edward W.; Massey, Philip; Roe, Henry G.

2014-07-01

The 4.3m Discovery Channel Telescope (DCT) has been conducting part-time science operations since January 2013. The f/6.1, 0.5° field-of-view at the RC focus is accessible through the Cassegrain instrument cube assembly, which can support 5 co-mounted instruments with rapid feed selection via deployable fold mirrors. Lowell Observatory has developed the Large Monolithic Imager (LMI), a 12.3' FOV 6K x 6K single CCD camera with a dual filter wheel, and installed at the straight-through, field-corrected RC focal station, which has served as the primary early science DCT instrument. Two low-resolution facility spectrographs are currently under development with first light for each anticipated by early 2015: the upgraded DeVeny Spectrograph, to be utilized for single object optical spectroscopy, and the unique Near-Infrared High-Throughput Spectrograph (NIHTS), optimized for single-shot JHK spectroscopy of faint solar system objects. These spectrographs will be mounted at folded RC ports, and the NIHTS installation will feature simultaneous optical imaging with LMI through use of a dichroic fold mirror. We report on the design, construction, commissioning, and progress of these 3 instruments in detail. We also discuss plans for installation of additional facility instrumentation on the DCT.

Efficacy of water treatment processes and endemic gastrointestinal illness - A multi-city study in Sweden.

PubMed

Tornevi, Andreas; Simonsson, Magnus; Forsberg, Bertil; Säve-Söderbergh, Melle; Toljander, Jonas

2016-10-01

Outbreaks of acute gastrointestinal illnesses (AGI) have been linked to insufficient drinking water treatment on numerous occasions in the industrialized world, but it is largely unknown to what extent public drinking water influences the endemic level of AGI. This paper aimed to examine endemic AGI and the relationship with pathogen elimination efficacy in public drinking water treatment processes. For this reason, time series data of all telephone calls to the Swedish National Healthcare Guide between November 2007 and February 2014 from twenty Swedish cities were obtained. Calls concerning vomiting, diarrhea or abdominal pain (AGI calls) were separated from other concerns (non-AGI calls). Information on which type of microbial barriers each drinking water treatment plant in these cities have been used were obtained, together with the barriers' theoretical pathogen log reduction efficacy. The total log reduction in the drinking water plants varied between 0.0 and 6.1 units for viruses, 0.0-14.6 units for bacteria and 0.0-7.3 units regarding protozoans. To achieve one general efficacy parameter for each plant, a weighted mean value of the log reductions (WLR) was calculated, with the weights based on how commonly these pathogen groups cause AGI. The WLR in the plants varied between 0.0 and 6.4 units. The effect of different pathogen elimination efficacy on levels of AGI calls relative non-AGI calls was evaluated in regression models, controlling for long term trends, population size, age distribution, and climatological area. Populations receiving drinking water produced with higher total log reduction was associated with a lower relative number of AGI calls. In overall, AGI calls decreased by 4% (OR = 0.96, CI: 0.96-0.97) for each unit increase in the WLR. The findings apply to both groundwater and surface water study sites, but are particularly evident among surface water sites during seasons when viruses are the main cause of AGI. This study proposes that the endemic level of gastroenteritis can indeed be reduced with more advanced treatment processes at many municipal drinking water treatment plants. Copyright © 2016 Elsevier Ltd. All rights reserved.

Clinical guidelines for the management of acute viral infections in patients with systemic lupus erythematosus.

PubMed

Ramos-Casals, M; Cuadrado, M J; Alba, P; Sanna, G; Brito-Zerón, P; Bertolaccini, L; Babini, A; Moreno, A; D'Cruz, D; Khamashta, M A

2009-12-01

In recent decades, many research groups have focused on the role of viral infections in the etiopathogenesis of systemic lupus erythematosus (SLE), the so-called "viral hypothesis". The main candidates are herpes viruses such as Epstein-Barr virus (EBV) and cytomegalovirus (CMV), which have a high seroprevalence in the general population. However, a viral causal agent of SLE has not yet been discovered, although many interesting clinical findings on the complex interactions between viruses and SLE have been made. This review analyzes 88 cases of acute viral infections in adult patients with SLE and identifies situations in which viral infections influenced the diagnosis, prognosis or treatment of SLE. We also propose clinical guidelines for the management of these infections in patients with SLE.

(Highly pathogenic) avian influenza as a zoonotic agent.

PubMed

Kalthoff, Donata; Globig, Anja; Beer, Martin

2010-01-27

Zoonotic agents challenging the world every year afresh are influenza A viruses. In the past, human pandemics caused by influenza A viruses had been occurring periodically. Wild aquatic birds are carriers of the full variety of influenza virus A subtypes, and thus, most probably constitute the natural reservoir of all influenza A viruses. Whereas avian influenza viruses in their natural avian reservoir are generally of low pathogenicity (LPAIV), some have gained virulence by mutation after transmission and adaptation to susceptible gallinaceous poultry. Those so-called highly pathogenic avian influenza viruses (HPAIV) then cause mass die-offs in susceptible birds and lead to tremendous economical losses when poultry is affected. Besides a number of avian influenza virus subtypes that have sporadically infected mammals, the HPAIV H5N1 Asia shows strong zoonotic characteristics and it was transmitted from birds to different mammalian species including humans. Theoretically, pandemic viruses might derive directly from avian influenza viruses or arise after genetic reassortment between viruses of avian and mammalian origin. So far, HPAIV H5N1 already meets two conditions for a pandemic virus: as a new subtype it has been hitherto unseen in the human population and it has infected at least 438 people, and caused severe illness and high lethality in 262 humans to date (August 2009). The acquisition of efficient human-to-human transmission would complete the emergence of a new pandemic virus. Therefore, fighting H5N1 at its source is the prerequisite to reduce pandemic risks posed by this virus. Other influenza viruses regarded as pandemic candidates derive from subtypes H2, H7, and H9 all of which have infected humans in the past. Here, we will give a comprehensive overview on avian influenza viruses in concern to their zoonotic potential. Copyright 2009 Elsevier B.V. All rights reserved.

Mastering Mobile Security

ERIC Educational Resources Information Center

Panettieri, Joseph C.

2007-01-01

Without proper security, mobile devices are easy targets for worms, viruses, and so-called robot ("bot") networks. Hackers increasingly use bot networks to launch massive attacks against eCommerce websites--potentially targeting one's online tuition payment or fundraising/financial development systems. How can one defend his mobile systems against…

Predominant mode of human immunodeficiency virus transfer between T cells is mediated by sustained Env-dependent neutralization-resistant virological synapses.

PubMed

Chen, Ping; Hübner, Wolfgang; Spinelli, Matthew A; Chen, Benjamin K

2007-11-01

Cell-free human immunodeficiency virus type 1 (HIV-1) can initiate infections, but contact between infected and uninfected T cells can enhance viral spread through intercellular structures called virological synapses (VS). The relative contribution of VS to cell-free viral transfer has not been carefully measured. Using an ultrasensitive, fluorescent virus transfer assay, we estimate that when VS between HIV-expressing Jurkat T cells and primary CD4(+) T cells are formed, cell-associated transfer of virus is 18,000-fold more efficient than uptake of cell-free virus. Furthermore, in contrast to cell-free virus uptake, the VS deposits virus rapidly into focal, trypsin-resistant compartments in target T cells. This massive virus internalization requires Env-CD4 receptor interactions but is resistant to inhibition by patient-derived neutralizing antisera that inhibit homologous cell-free virus. Deleting the Env cytoplasmic tail does not abrogate VS-mediated transfer, but it renders the VS sensitive to neutralizing antibodies, suggesting that the tail limits exposure of VS-neutralizing epitopes on the surface of infected cells. Dynamic live imaging of the VS reveals that HIV-expressing cells are polarized and make sustained, Env-dependent contacts with target cells through uropod-like structures. The polarized T-cell morphology, Env-CD4 coordinated adhesion, and viral transfer from HIV-infected to uninfected cells suggest that VS allows HIV-1 to evade antibody neutralization and to disseminate efficiently. Future studies will discern to what extent this massive viral transfer contributes to productive infection or viral dissemination through the migration of virus-carrying T cells.

MEASURING DARK MATTER PROFILES NON-PARAMETRICALLY IN DWARF SPHEROIDALS: AN APPLICATION TO DRACO

DOE Office of Scientific and Technical Information (OSTI.GOV)

Jardel, John R.; Gebhardt, Karl; Fabricius, Maximilian H.

2013-02-15

We introduce a novel implementation of orbit-based (or Schwarzschild) modeling that allows dark matter density profiles to be calculated non-parametrically in nearby galaxies. Our models require no assumptions to be made about velocity anisotropy or the dark matter profile. The technique can be applied to any dispersion-supported stellar system, and we demonstrate its use by studying the Local Group dwarf spheroidal galaxy (dSph) Draco. We use existing kinematic data at larger radii and also present 12 new radial velocities within the central 13 pc obtained with the VIRUS-W integral field spectrograph on the 2.7 m telescope at McDonald Observatory. Ourmore » non-parametric Schwarzschild models find strong evidence that the dark matter profile in Draco is cuspy for 20 {<=} r {<=} 700 pc. The profile for r {>=} 20 pc is well fit by a power law with slope {alpha} = -1.0 {+-} 0.2, consistent with predictions from cold dark matter simulations. Our models confirm that, despite its low baryon content relative to other dSphs, Draco lives in a massive halo.« less

Easy and accurate reconstruction of whole HIV genomes from short-read sequence data with shiver

PubMed Central

Blanquart, François; Golubchik, Tanya; Gall, Astrid; Bakker, Margreet; Bezemer, Daniela; Croucher, Nicholas J; Hall, Matthew; Hillebregt, Mariska; Ratmann, Oliver; Albert, Jan; Bannert, Norbert; Fellay, Jacques; Fransen, Katrien; Gourlay, Annabelle; Grabowski, M Kate; Gunsenheimer-Bartmeyer, Barbara; Günthard, Huldrych F; Kivelä, Pia; Kouyos, Roger; Laeyendecker, Oliver; Liitsola, Kirsi; Meyer, Laurence; Porter, Kholoud; Ristola, Matti; van Sighem, Ard; Cornelissen, Marion; Kellam, Paul; Reiss, Peter

2018-01-01

Abstract Studying the evolution of viruses and their molecular epidemiology relies on accurate viral sequence data, so that small differences between similar viruses can be meaningfully interpreted. Despite its higher throughput and more detailed minority variant data, next-generation sequencing has yet to be widely adopted for HIV. The difficulty of accurately reconstructing the consensus sequence of a quasispecies from reads (short fragments of DNA) in the presence of large between- and within-host diversity, including frequent indels, may have presented a barrier. In particular, mapping (aligning) reads to a reference sequence leads to biased loss of information; this bias can distort epidemiological and evolutionary conclusions. De novo assembly avoids this bias by aligning the reads to themselves, producing a set of sequences called contigs. However contigs provide only a partial summary of the reads, misassembly may result in their having an incorrect structure, and no information is available at parts of the genome where contigs could not be assembled. To address these problems we developed the tool shiver to pre-process reads for quality and contamination, then map them to a reference tailored to the sample using corrected contigs supplemented with the user’s choice of existing reference sequences. Run with two commands per sample, it can easily be used for large heterogeneous data sets. We used shiver to reconstruct the consensus sequence and minority variant information from paired-end short-read whole-genome data produced with the Illumina platform, for sixty-five existing publicly available samples and fifty new samples. We show the systematic superiority of mapping to shiver’s constructed reference compared with mapping the same reads to the closest of 3,249 real references: median values of 13 bases called differently and more accurately, 0 bases called differently and less accurately, and 205 bases of missing sequence recovered. We also successfully applied shiver to whole-genome samples of Hepatitis C Virus and Respiratory Syncytial Virus. shiver is publicly available from https://github.com/ChrisHIV/shiver. PMID:29876136

Systematic Evaluation of In Vitro and In Vivo Adventitious Virus Assays for the Detection of Viral Contamination of Cell Banks and Biological Products1

PubMed Central

Gombold, James; Karakasidis, Stephen; Niksa, Paula; Podczasy, John; Neumann, Kitti; Richardson, James; Sane, Nandini; Johnson-Leva, Renita; Randolph, Valerie; Sadoff, Jerald; Minor, Phillip; Schmidt, Alexander; Duncan, Paul; Sheets, Rebecca L.

2015-01-01

Viral vaccines and the cell substrates used to manufacture them are subjected to tests for adventitious agents, including viruses, which might contaminant them. Some of the compendial methods (in vivo and in vitro in cell culture) were established in the mid-20th century. These methods have not been subjected to current assay validation, as new methods would need to be. This study was undertaken to provide insight into the breadth (selectivity) and sensitivity (limit of detection) of the routine methods, two such validation parameters. Sixteen viral stocks were prepared and characterized. These stocks were tested in serial dilutions by the routine methods to establish which viruses were detected by which methods and above what limit of detection. Sixteen out of sixteen viruses were detected in vitro, though one (bovine viral diarrhea virus) required special conditions to detect and another (rubella virus) was detected with low sensitivity. Many were detected at levels below 1 TCID50 or PFU (titers were established on the production cell line in most cases). In contrast, in vivo, only 6/11 viruses were detected, and 4 of these were detected only at amounts one or more logs above 1 TCID50 or PFU. Only influenza virus and vesicular stomatitis virus were detected at lower amounts in vivo than in vitro. Given the call to reduce, refine, or replace (3 R's) the use of animals in product safety testing and the emergence of new technologies for the detection of viruses, a re-examination of the current adventitious virus testing strategies seems warranted. Suggested pathways forward are offered. PMID:24681273

Laser synchronized high-speed shutter for spectroscopic application

DOEpatents

Miles, Paul C.; Porter, Eldon L.; Prast, Thomas L.; Sunnarborg, Duane A.

2002-01-01

A fast mechanical shutter, based on rotating chopper wheels, has been designed and implemented to shutter the entrance slit of a spectrograph. This device enables an exposure time of 9 .mu.s to be achieved for a 0.8 mm wide spectrograph entrance slit, achieves 100% transmission in the open state, and an essentially infinite extinction ratio. The device further incorporates chopper wheel position sensing electronics to permit the synchronous triggering of a laser source.

VizieR Online Data Catalog: Texas-Oxford NVSS (TONS) radio galaxies (Brand+, 2005)

NASA Astrophysics Data System (ADS)

Brand, K.; Rawlings, S.; Hill, G. J.; Tufts, J. R.

2005-10-01

Optical spectra were obtained during the period 2000 October-2003 May on the 2.6-m Nordic Optical Telescope (NOT) using the Andalucia faint object spectrograph, the 4.2-m William Herschel telescope (WHT) using ISIS, the 2.7-m Smith reflector at McDonald with the Imaging Grism Instrument (IGI), and the Hobby-Eberly Telescope (HET) using the Marcario low-resolution spectrograph (LRS). (3 data files).

Testing the Linearity of the Cosmic Origins Spectrograph FUV Channel Thermal Correction

NASA Astrophysics Data System (ADS)

Fix, Mees B.; De Rosa, Gisella; Sahnow, David

2018-05-01

The Far Ultraviolet Cross Delay Line (FUV XDL) detector on the Cosmic Origins Spectrograph (COS) is subject to temperature-dependent distortions. The correction performed by the COS calibration pipeline (CalCOS) assumes that these changes are linear across the detector. In this report we evaluate the accuracy of the linear approximations using data obtained on orbit. Our results show that the thermal distortions are consistent with our current linear model.

Studying focal ratio degradation of optical fibers for Subaru's Prime Focus Spectrograph

NASA Astrophysics Data System (ADS)

dos Santos, Jesulino Bispo; de Oliveira, Antonio Cesar; Gunn, James; de Oliveira, Ligia Souza; Vital de Arruda, Marcio; Castilho, Bruno; Gneiding, Clemens Darvin; Ribeiro, Flavio Felipe; Murray, Graham; Reiley, Daniel J.; Sodré Junior, Laerte; de Oliveira, Claudia Mendes

2014-07-01

Focal Ration Degradation (FRD) is a change in light's angular distribution caused by fiber optics. FRD is important to fiber-fed, spectroscopic astronomical systems because it can cause loss of signal, degradation in spectral resolution, or increased complexity in spectrograph design. Laboratório Nacional de Astrofísica (LNA) has developed a system that can accurately and precisely measures FRD, using an absolute method that can also measure fiber throughput. This paper describes the metrology system and shows measurements of Polymicro's fiber FBP129168190, FBP127165190 and Fujikura fiber 128170190. Although the FRD of the two fibers are low and similar to one another, it is very important to know the exact characteristics of these fibers since both will be used in the construction of FOCCoS (Fiber Optical Cable and Connectors System) for PFS (Prime Focus Spectrograph) to be installed at the Subaru telescope.

The Hubble Spectroscopic Legacy Archive

NASA Astrophysics Data System (ADS)

Peeples, M.; Tumlinson, J.; Fox, A.; Aloisi, A.; Fleming, S.; Jedrzejewski, R.; Oliveira, C.; Ayres, T.; Danforth, C.; Keeney, B.; Jenkins, E.

2017-04-01

With no future space ultraviolet instruments currently planned, the data from the UV spectrographs aboard the Hubble Space Telescope have a legacy value beyond their initial science goals. The goal of the Hubble Spectroscopic Legacy Archive(HSLA) is to provide to the community new science-grade combined spectra for all publicly available data obtained by the Cosmic Origins Spectrograph (COS)and the Space Telescope Imaging Spectrograph (STIS). These data are packaged into "smart archives" according to target type and scientific themes to facilitate the construction of archival samples for common science uses. A new "quick look" capability makes the data easy for users to quickly access, assess the quality of,and download for archival science. The first generation of these products for the far-ultraviolet (FUV) modes of COS was made available online via the Mikulski Archive for Space Telescopes (MAST) in early 2016 and updated in early 2017; future releases will include COS/NUV and STIS/UV data.

Optimization and performance of the Robert Stobie Spectrograph Near-InfraRed detector system

NASA Astrophysics Data System (ADS)

Mosby, Gregory; Indahl, Briana; Eggen, Nathan; Wolf, Marsha; Hooper, Eric; Jaehnig, Kurt; Thielman, Don; Burse, Mahesh

2018-01-01

At the University of Wisconsin-Madison, we are building and testing the near-infrared (NIR) spectrograph for the Southern African Large Telescope-RSS-NIR. RSS-NIR will be an enclosed cooled integral field spectrograph. The RSS-NIR detector system uses a HAWAII-2RG (H2RG) HgCdTe detector from Teledyne controlled by the SIDECAR ASIC and an Inter-University Centre for Astronomy and Astrophysics (IUCCA) ISDEC card. We have successfully characterized and optimized the detector system and report on the optimization steps and performance of the system. We have reduced the CDS read noise to ˜20 e- for 200 kHz operation by optimizing ASIC settings. We show an additional factor of 3 reduction of read noise using Fowler sampling techniques and a factor of 2 reduction using up-the-ramp group sampling techniques. We also provide calculations to quantify the conditions for sky-limited observations using these sampling techniques.

Characterization and optimization for detector systems of IGRINS

NASA Astrophysics Data System (ADS)

Jeong, Ueejeong; Chun, Moo-Young; Oh, Jae Sok; Park, Chan; Yuk, In-Soo; Oh, Heeyoung; Kim, Kang-Min; Ko, Kyeong Yeon; Pavel, Michael D.; Yu, Young Sam; Jaffe, Daniel T.

2014-07-01

IGRINS (Immersion GRating INfrared Spectrometer) is a high resolution wide-band infrared spectrograph developed by the Korea Astronomy and Space Science Institute (KASI) and the University of Texas at Austin (UT). This spectrograph has H-band and K-band science cameras and a slit viewing camera, all three of which use Teledyne's λc~2.5μm 2k×2k HgCdTe HAWAII-2RG CMOS detectors. The two spectrograph cameras employ science grade detectors, while the slit viewing camera includes an engineering grade detector. Teledyne's cryogenic SIDECAR ASIC boards and JADE2 USB interface cards were installed to control those detectors. We performed experiments to characterize and optimize the detector systems in the IGRINS cryostat. We present measurements and optimization of noise, dark current, and referencelevel stability obtained under dark conditions. We also discuss well depth, linearity and conversion gain measurements obtained using an external light source.

Rocket studies of solar corona and transition region. [X-Ray spectrometer/spectrograph telescope

NASA Technical Reports Server (NTRS)

Acton, L. W.; Bruner, E. C., Jr.; Brown, W. A.; Nobles, R. A.

1979-01-01

The XSST (X-Ray Spectrometer/Spectrograph Telescope) rocket payload launched by a Nike Boosted Black Brant was designed to provide high spectral resolution coronal soft X-ray line information on a spectrographic plate, as well as time resolved photo-electric records of pre-selected lines and spectral regions. This spectral data is obtained from a 1 x 10 arc second solar region defined by the paraboloidal telescope of the XSST. The transition region camera provided full disc images in selected spectral intervals originating in lower temperature zones than the emitting regions accessible to the XSST. A H-alpha camera system allowed referencing the measurements to the chromospheric temperatures and altitudes. Payload flight and recovery information is provided along with X-ray photoelectric and UV flight data, transition camera results and a summary of the anomalies encountered. Instrument mechanical stability and spectrometer pointing direction are also examined.

VizieR Online Data Catalog: Radial velocities of HD 96511, HR 7578, and KZ And (Fekel+, 2017)

NASA Astrophysics Data System (ADS)

Fekel, F. C.; Henry, G. W.; Tomkin, J.

2018-06-01

Our new spectroscopic observations of HD 96511, HR 7578, and KZ And were obtained at three observatories. The majority were acquired from 2003 through 2017 with the Tennessee State University 2 m automatic spectroscopic telescope (AST) and a fiber-fed echelle spectrograph. That telescope is part of Fairborn Observatory near Washington Camp in the Patagonia Mountains of southeastern Arizona (Eaton & Williamson 2004SPIE.5496..710E, 2007PASP..119..886E). From 2005 through 2011 we acquired additional spectrograms at the Kitt Peak National Observatory (KPNO) with the coude feed telescope and coude spectrograph. Most of the observations were obtained with a Texas Instruments (TI) CCD detector. Finally, at McDonald Observatory in 2005 and 2006 we collected four spectra with the 2.1 m telescope, the Sandiford Cassegrain echelle spectrograph (McCarthy et al. 1993PASP..105..881M), and a Reticon CCD. (5 data files).

Electrostatic Spectrograph with a Wide Range of Simultaneously Recorded Energies Composed of Two Coaxial Electrodes with Closed End Faces and a Discrete Combined External Electrode

NASA Astrophysics Data System (ADS)

Fishkova, T. Ya.

2018-01-01

An optimal set of geometric and electrical parameters of a high-aperture electrostatic charged-particle spectrograph with a range of simultaneously recorded energies of E/ E min = 1-50 has been found by computer simulation, which is especially important for the energy analysis of charged particles during fast processes in various materials. The spectrograph consists of two coaxial electrodes with end faces closed by flat electrodes. The external electrode with a conical-cylindrical form is cut into parts with potentials that increase linearly, except for the last cylindrical part, which is electrically connected to the rear end electrode. The internal cylindrical electrode and the front end electrode are grounded. In the entire energy range, the system is sharply focused on the internal cylindrical electrode, which provides an energy resolution of no worse than 3 × 10-3.

The Hubble Space Telescope: UV, Visible, and Near-Infrared Pursuits

NASA Technical Reports Server (NTRS)

Wiseman, Jennifer

2010-01-01

The Hubble Space Telescope continues to push the limits on world-class astrophysics. Cameras including the Advanced Camera for Surveys and the new panchromatic Wide Field Camera 3 which was installed nu last year's successful servicing mission S2N4,o{fer imaging from near-infrared through ultraviolet wavelengths. Spectroscopic studies of sources from black holes to exoplanet atmospheres are making great advances through the versatile use of STIS, the Space Telescope Imaging Spectrograph. The new Cosmic Origins Spectrograph, also installed last year, is the most sensitive UV spectrograph to fly io space and is uniquely suited to address particular scientific questions on galaxy halos, the intergalactic medium, and the cosmic web. With these outstanding capabilities on HST come complex needs for laboratory astrophysics support including atomic and line identification data. I will provide an overview of Hubble's current capabilities and the scientific programs and goals that particularly benefit from the studies of laboratory astrophysics.

Thirty Years, One Million Spectra: Public Access to the SAO Spectral Archives

NASA Astrophysics Data System (ADS)

Mink, J.; Moran, S.

2015-09-01

Over the last 30 years, the SAO Telescope Data Center has reduced and archived over 1,000,000 spectra, consisting of 287,000 spectra from five high dispersion Echelle spectrographs and 717,000 spectra from four low dispersion spectrographs, across three telescopes. 151,000 spectra from six instruments are currently online and publicly available, covering many interesting objects in the northern sky, including most of the galaxies in the Updated Zwicky Catalog which are reachable through NED or Simbad. A majority of the high dispersion spectra will soon be made public, as will more data from the MMT multi-fiber spectrographs. Many objects in the archive have multiple spectra over time, which make them a valuable resource for archival time-domain studies. We are now developing a system to make all of the public spectra more easily searchable and viewable through the Virtual Observatory.

Discovery of Novel Rhabdoviruses in the Blood of Healthy Individuals from West Africa

PubMed Central

Folarin, Onikepe A.; Grove, Jessica N.; Odia, Ikponmwonsa; Ehiane, Philomena E.; Omoniwa, Omowunmi; Omoregie, Omigie; Jiang, Pan-Pan; Yozwiak, Nathan L.; Matranga, Christian B.; Yang, Xiao; Gire, Stephen K.; Winnicki, Sarah; Tariyal, Ridhi; Schaffner, Stephen F.; Okokhere, Peter O.; Okogbenin, Sylvanus; Akpede, George O.; Asogun, Danny A.; Agbonlahor, Dennis E.; Walker, Peter J.; Tesh, Robert B.; Levin, Joshua Z.; Garry, Robert F.; Sabeti, Pardis C.; Happi, Christian T.

2015-01-01

Next-generation sequencing (NGS) has the potential to transform the discovery of viruses causing unexplained acute febrile illness (UAFI) because it does not depend on culturing the pathogen or a priori knowledge of the pathogen’s nucleic acid sequence. More generally, it has the potential to elucidate the complete human virome, including viruses that cause no overt symptoms of disease, but may have unrecognized immunological or developmental consequences. We have used NGS to identify RNA viruses in the blood of 195 patients with UAFI and compared them with those found in 328 apparently healthy (i.e., no overt signs of illness) control individuals, all from communities in southeastern Nigeria. Among UAFI patients, we identified the presence of nucleic acids from several well-characterized pathogenic viruses, such as HIV-1, hepatitis, and Lassa virus. In our cohort of healthy individuals, however, we detected the nucleic acids of two novel rhabdoviruses. These viruses, which we call Ekpoma virus-1 (EKV-1) and Ekpoma virus-2 (EKV-2), are highly divergent, with little identity to each other or other known viruses. The most closely related rhabdoviruses are members of the genus Tibrovirus and Bas-Congo virus (BASV), which was recently identified in an individual with symptoms resembling hemorrhagic fever. Furthermore, by conducting a serosurvey of our study cohort, we find evidence for remarkably high exposure rates to the identified rhabdoviruses. The recent discoveries of novel rhabdoviruses by multiple research groups suggest that human infection with rhabdoviruses might be common. While the prevalence and clinical significance of these viruses are currently unknown, these viruses could have previously unrecognized impacts on human health; further research to understand the immunological and developmental impact of these viruses should be explored. More generally, the identification of similar novel viruses in individuals with and without overt symptoms of disease highlights the need for a broader understanding of the human virome as efforts for viral detection and discovery advance. PMID:25781465

Setting Up a Patient Care Call Center After Potential HCV Exposure.

PubMed

Friedman, Candace; Bucholz, Brigette; Anderson, Susan G; Dwyer, Shon A; Aguirre, Josephine

2016-09-01

Notify patients of a potential exposure to hepatitis C virus, coordinate testing, and provide follow-up counseling. A team was convened to identify various needs in developing a patient care call center. The areas addressed included the following: location, hours, and duration; telephone accessibility; tracking calls and test results; billing; staffing; notification; and potential issues requiring additional evaluation. Disclosure letters were sent to 1275 patients; 57 letters were not deliverable. There were 245 calls to the helpline from October 25 through November 15. Lessons learned centered on hours of availability, staffing, use of an automated phone system and email communication, tracking results, and billing issues. A successful patient notification and follow-up effort requires a multidisciplinary team, internal and external communication, collection of data over an extended period, and coordination of patient information.

Targeted DNA Mutagenesis for the Cure of Chronic Viral Infections

PubMed Central

Schiffer, Joshua T.; Aubert, Martine; Weber, Nicholas D.; Mintzer, Esther; Stone, Daniel

2012-01-01

Human immunodeficiency virus type 1 (HIV-1), hepatitis B virus (HBV), and herpes simplex virus (HSV) have been incurable to date because effective antiviral therapies target only replicating viruses and do not eradicate latently integrated or nonreplicating episomal viral genomes. Endonucleases that can target and cleave critical regions within latent viral genomes are currently in development. These enzymes are being engineered with high specificity such that off-target binding of cellular DNA will be absent or minimal. Imprecise nonhomologous-end-joining (NHEJ) DNA repair following repeated cleavage at the same critical site may permanently disrupt translation of essential viral proteins. We discuss the benefits and drawbacks of three types of DNA cleavage enzymes (zinc finger endonucleases, transcription activator-like [TAL] effector nucleases [TALENs], and homing endonucleases [also called meganucleases]), the development of delivery vectors for these enzymes, and potential obstacles for successful treatment of chronic viral infections. We then review issues regarding persistence of HIV-1, HBV, and HSV that are relevant to eradication with genome-altering approaches. PMID:22718830

Interfamilial recombination between viruses led to acquisition of a novel translation-enhancing RNA element that allows resistance breaking

PubMed Central

Miras, Manuel; Sempere, Raquel N.; Kraft, Jelena J.; Miller, W. Allen; Aranda, Miguel A.; Truniger, Veronica

2015-01-01

Summary Many plant viruses depend on functional RNA elements, called 3′-UTR cap-independent translation enhancers (3′-CITEs), for translation of their RNAs. In this manuscript we provide direct proof for the existing hypothesis that 3′-CITEs are modular and transferable by recombination in nature, and that this is associated with an advantage for the created virus. By characterizing a newly identified Melon necrotic spot virus (MNSV; Tombusviridae) isolate, which is able to overcome eukaryotic translation initiation factor 4E (eIF4E)-mediated resistance, we found that it contains a 55 nucleotide insertion in its 3′-UTR. We provide strong evidence that this insertion was acquired by interfamilial recombination with the 3′-UTR of an Asiatic Cucurbit aphid-borne yellows virus (CABYV; Luteoviridae). By constructing chimeric viruses, we showed that this recombined sequence is responsible for resistance breaking. Analysis of the translational efficiency of reporter constructs showed that this sequence functions as a novel 3′-CITE in both resistant and susceptible plants, being essential for translation control in resistant plants. In conclusion, we showed that a recombination event between two clearly identified viruses from different families led to the transfer of exactly the sequence corresponding to a functional RNA element, giving rise to a new isolate with the capacity to infect an otherwise non-susceptible host. PMID:24372390

Interfamilial recombination between viruses led to acquisition of a novel translation-enhancing RNA element that allows resistance breaking.

PubMed

Miras, Manuel; Sempere, Raquel N; Kraft, Jelena J; Miller, W Allen; Aranda, Miguel A; Truniger, Veronica

2014-04-01

Many plant viruses depend on functional RNA elements, called 3'-UTR cap-independent translation enhancers (3'-CITEs), for translation of their RNAs. In this manuscript we provide direct proof for the existing hypothesis that 3'-CITEs are modular and transferable by recombination in nature, and that this is associated with an advantage for the created virus. By characterizing a newly identified Melon necrotic spot virus (MNSV; Tombusviridae) isolate, which is able to overcome eukaryotic translation initiation factor 4E (eIF4E)-mediated resistance, we found that it contains a 55 nucleotide insertion in its 3'-UTR. We provide strong evidence that this insertion was acquired by interfamilial recombination with the 3'-UTR of an Asiatic Cucurbit aphid-borne yellows virus (CABYV; Luteoviridae). By constructing chimeric viruses, we showed that this recombined sequence is responsible for resistance breaking. Analysis of the translational efficiency of reporter constructs showed that this sequence functions as a novel 3'-CITE in both resistant and susceptible plants, being essential for translation control in resistant plants. In conclusion, we showed that a recombination event between two clearly identified viruses from different families led to the transfer of exactly the sequence corresponding to a functional RNA element, giving rise to a new isolate with the capacity to infect an otherwise nonsusceptible host. © 2013 The Authors. New Phytologist © 2013 New Phytologist Trust.

Protective immunity against influenza in HLA-A2 transgenic mice by modified vaccinia virus Ankara vectored vaccines containing internal influenza proteins.

PubMed

Di Mario, Giuseppina; Sciaraffia, Ester; Facchini, Marzia; Gubinelli, Francesco; Soprana, Elisa; Panigada, Maddalena; Bernasconi, Valentina; Garulli, Bruno; Siccardi, Antonio; Donatelli, Isabella; Castrucci, Maria R

2017-03-01

The emergence of novel strains of influenza A viruses with hemagglutinins (HAs) that are antigenically distinct from those circulating in humans, and thus have pandemic potential, pose concerns and call for the development of more broadly protective influenza vaccines. In the present study, modified vaccinia virus Ankara (MVA) encoding internal influenza antigens were evaluated for their immunogenicity and ability to protect HLA-A2.1 transgenic (AAD) mice from infection with influenza viruses. MVAs expressing NP (MVA-NP), M1 (MVA-M1) or polymerase PB1 (MVA-PB1) of A/California/4/09 (CA/09) virus were generated and used to immunize AAD mice. Antibodies and CD8+T cell responses were assessed by ELISA and ELISPOT, respectively, and challenge experiments were performed by infecting vaccinated mice with CA/09 virus. CD8+T cells specific to immunodominant and subdominant epitopes on the internal influenza proteins were elicited by MVA-based vectors in AAD mice, whereas influenza-specific antibodies were detected only in MVA-NP-immunized mice. Both M1- and NP-based MVA vaccines, regardless of whether they were applied individually or in combination, conferred protection against lethal influenza virus challenge. Our data further emphasize the promising potential of MVA vector expressing internal antigens toward the development of a universal influenza vaccine.

Outbreak of swine influenza in Argentina reveals a non-contemporary human H3N2 virus highly transmissible among pigs

PubMed Central

Cappuccio, Javier A.; Pena, Lindomar; Dibárbora, Marina; Rimondi, Agustina; Piñeyro, Pablo; Insarralde, Lucas; Quiroga, María A.; Machuca, Mariana; Craig, Maria I.; Olivera, Valeria; Chockalingam, Ashok; Perfumo, Carlos J.

2011-01-01

Sporadic outbreaks of human H3N2 influenza A virus (IAV) infections in swine populations have been reported in Asia, Europe and North America since 1970. In South America, serological surveys in pigs indicate that IAVs of the H3 and H1 subtypes are currently in circulation; however, neither virus isolation nor characterization has been reported. In November 2008, an outbreak of respiratory disease in pigs consistent with swine influenza virus (SIV) infection was detected in Argentina. The current study describes the clinical epidemiology, pathology, and molecular and biological characteristics of the virus. Phylogenetic analysis revealed that the virus isolate shared nucleotide identities of 96–98 % with H3N2 IAVs that circulated in humans from 2000 to 2003. Antigenically, sera from experimentally inoculated animals cross-reacted mainly with non-contemporary human-origin H3N2 influenza viruses. In an experimental infection in a commercial swine breed, the virus was of low virulence but was transmitted efficiently to contact pigs and caused severe disease when an infected animal acquired a secondary bacterial infection. This is the first report of a wholly human H3N2 IAV associated with clinical disease in pigs in South America. These studies highlight the importance of two-way transmission of IAVs and SIVs between pigs and humans, and call for enhanced influenza surveillance in the pig population worldwide. PMID:21849519

Fine Structure of Changes Produced in Cultured Cells Sampled at Specified Intervals During a Single Growth Cycle of Polio Virus

PubMed Central

Kallman, Frances; Williams, Robley C.; Dulbecco, Renato; Vogt, Marguerite

1958-01-01

Primary suspended cultures of rhesus monkey kidney cells were infected with poliomyelitis virus, type 1 (Brunhilde strain). The release of virus from these cells over a one-step growth curve was correlated with their change in fine structure, as seen in the electron microscope. Most of the cells were infected nearly simultaneously, and morphological changes developed in the cells were sufficiently synchronous to be classified into three stages. The earliest change (stage I) became visible at a time when virus release into the culture fluid begins, some 3 hours after adsorption. Accentuation of the abnormal characteristics soon occurs, at 4 to 7 hours after adsorption, and results in stage II. Stage III represents the appearance of cells after their rate of virus release had passed its maximum, and probably the abnormal morphology of these cells reflects non-specific physiological damage. There seems to be consistency between the previously described cellular changes as seen under the light microscope and the finer scale changes reported here. Cytoplasmic bodies, called U bodies, were seen in large number at the time when the virus release was the most rapid (stage II). While these bodies are not of proper size to be considered polio virus, they seem to be specifically related to the infection. No evidence was found for the presence of particles that could even be presumptively identified with those of polio virus. PMID:13549502

Outbreak of swine influenza in Argentina reveals a non-contemporary human H3N2 virus highly transmissible among pigs.

PubMed

Cappuccio, Javier A; Pena, Lindomar; Dibárbora, Marina; Rimondi, Agustina; Piñeyro, Pablo; Insarralde, Lucas; Quiroga, María A; Machuca, Mariana; Craig, Maria I; Olivera, Valeria; Chockalingam, Ashok; Perfumo, Carlos J; Perez, Daniel R; Pereda, Ariel

2011-12-01

Sporadic outbreaks of human H3N2 influenza A virus (IAV) infections in swine populations have been reported in Asia, Europe and North America since 1970. In South America, serological surveys in pigs indicate that IAVs of the H3 and H1 subtypes are currently in circulation; however, neither virus isolation nor characterization has been reported. In November 2008, an outbreak of respiratory disease in pigs consistent with swine influenza virus (SIV) infection was detected in Argentina. The current study describes the clinical epidemiology, pathology, and molecular and biological characteristics of the virus. Phylogenetic analysis revealed that the virus isolate shared nucleotide identities of 96-98 % with H3N2 IAVs that circulated in humans from 2000 to 2003. Antigenically, sera from experimentally inoculated animals cross-reacted mainly with non-contemporary human-origin H3N2 influenza viruses. In an experimental infection in a commercial swine breed, the virus was of low virulence but was transmitted efficiently to contact pigs and caused severe disease when an infected animal acquired a secondary bacterial infection. This is the first report of a wholly human H3N2 IAV associated with clinical disease in pigs in South America. These studies highlight the importance of two-way transmission of IAVs and SIVs between pigs and humans, and call for enhanced influenza surveillance in the pig population worldwide.

pLoc-mVirus: Predict subcellular localization of multi-location virus proteins via incorporating the optimal GO information into general PseAAC.

PubMed

Cheng, Xiang; Xiao, Xuan; Chou, Kuo-Chen

2017-09-10

Knowledge of subcellular locations of proteins is crucially important for in-depth understanding their functions in a cell. With the explosive growth of protein sequences generated in the postgenomic age, it is highly demanded to develop computational tools for timely annotating their subcellular locations based on the sequence information alone. The current study is focused on virus proteins. Although considerable efforts have been made in this regard, the problem is far from being solved yet. Most existing methods can be used to deal with single-location proteins only. Actually, proteins with multi-locations may have some special biological functions. This kind of multiplex proteins is particularly important for both basic research and drug design. Using the multi-label theory, we present a new predictor called "pLoc-mVirus" by extracting the optimal GO (Gene Ontology) information into the general PseAAC (Pseudo Amino Acid Composition). Rigorous cross-validation on a same stringent benchmark dataset indicated that the proposed pLoc-mVirus predictor is remarkably superior to iLoc-Virus, the state-of-the-art method in predicting virus protein subcellular localization. To maximize the convenience of most experimental scientists, a user-friendly web-server for the new predictor has been established at http://www.jci-bioinfo.cn/pLoc-mVirus/, by which users can easily get their desired results without the need to go through the complicated mathematics involved. Copyright © 2017 Elsevier B.V. All rights reserved.

Slitless Spectroscopy

NASA Astrophysics Data System (ADS)

Davila, J. M.; O'Neill, J. F.

2013-12-01

Spectrographs provide a unique window into plasma parameters in the solar atmosphere. In fact spectrographs provide the most accurate measurements of plasma parameters such as density, temperature, and flow speed. However, traditionally spectrographic instruments have suffered from the inability to cover large spatial regions of the Sun quickly. To cover an active region sized spatial region, the slit must be rastered over the area of interest with an exposure taken at each pointing location. Because of this long cycle time, the spectra of dynamic events like flares, CME initiations, or transient brightening are obtained only rarely. And even if spectra are obtained they are either taken over an extremely small spatial region, or the spectra are not co-temporal across the raster. Either of these complicates the interpretation of the spectral raster results. Imagers are able to provide high time and spatial resolution images of the full Sun but with limited spectral resolution. The telescopes onboard the Solar Dynamics Observatory (SDO) normally take a full disk solar image every 10 seconds with roughly 1 arcsec spatial resolution. However the spectral resolution of the multilayer imagers on SDO is of order 100 times less than a typical spectrograph. Because of this it is difficult to interpret multilayer imaging data to accurately obtain plasma parameters like temperature and density from these data, and there is no direct measure of plasma flow velocity. SERTS and EIS partially addressed this problem by using a wide slit to produce monochromatic images with limited FOV to limit overlapping. However dispersion within the wide slit image remained a problem which prevented the determination of intensity, Doppler shift, and line width in the wide slit. Kankelborg and Thomas introduced the idea of using multiple images -1, 0, and +1 spectral orders of a single emission line. This scheme provided three independent images to measure the three spectral line parameters in each pixel with the Multi-Order Solar EUV Spectrograph (MOSES) instrument. We suggest a reconstruction approach based on tomographic methods with regularization. Preliminary results show that the typical Doppler shift and line width error introduced by the reconstruction method is of order a few km/s at 300 A. This is on the order of the error obtained in narrow slit spectrographs but with data obtained over a two-dimensional field of view.

Laboratory Testing and Performance Verification of the CHARIS Integral Field Spectrograph

NASA Technical Reports Server (NTRS)

Groff, Tyler D.; Chilcote, Jeffrey; Kasdin, N. Jeremy; Galvin, Michael; Loomis, Craig; Carr, Michael A.; Brandt, Timothy; Knapp, Gillian; Limbach, Mary Anne; Guyon, Olivier;

Li depletion in solar analogues with exoplanets. Extending the sample

NASA Astrophysics Data System (ADS)

Delgado Mena, E.; Israelian, G.; González Hernández, J. I.; Sousa, S. G.; Mortier, A.; Santos, N. C.; Adibekyan, V. Zh.; Fernandes, J.; Rebolo, R.; Udry, S.; Mayor, M.

2014-02-01

Aims: We want to study the effects of the formation of planets and planetary systems on the atmospheric Li abundance of planet host stars. Methods: In this work we present new determinations of lithium abundances for 326 main sequence stars with and without planets in the Teff range 5600-5900 K. The 277 stars come from the HARPS sample, the remaining targets were observed with a variety of high-resolution spectrographs. Results: We confirm significant differences in the Li distribution of solar twins (Teff = T⊙ ± 80 K, log g = log g⊙ ± 0.2 and [Fe/H] = [Fe/H]⊙ ± 0.2): the full sample of planet host stars (22) shows Li average values lower than "single" stars with no detected planets (60). If we focus on subsamples with narrower ranges in metallicity and age, we observe indications of a similar result though it is not so clear for some of the subsamples. Furthermore, we compare the observed spectra of several couples of stars with very similar parameters that show differences in Li abundances up to 1.6 dex. Therefore we show that neither age, mass, nor metallicity of a parent star is the only cause for enhanced Li depletion in solar analogues. Conclusions: We conclude that another variable must account for that difference and suggest that this could be the presence of planets that causes additional rotationally induced mixing in the external layers of planet host stars. Moreover, we find indications that the amount of depletion of Li in planet-host solar-type stars is higher when the planets are more massive than Jupiter. Based on observations collected at the La Silla Observatory, ESO (Chile), with the HARPS spectrograph at the 3.6 m ESO telescope, with CORALIE spectrograph at the 1.2 m Euler Swiss telescope and with the FEROS spectrograph at the 1.52 m ESO telescope; at the Paranal Observatory, ESO (Chile), using the UVES spectrograph at the VLT/UT2 Kueyen telescope, and with the FIES, SARG, and UES spectrographs at the 2.5 m NOT, the 3.6 m TNG and the 4.2 WHT, respectively, operated on the island of La Palma in the Spanish Observatorio del Roque de los Muchachos.Table 6 is available in electronic form at http://www.aanda.org

The genomic underpinnings of eukaryotic virus taxonomy: creating a sequence-based framework for family-level virus classification.

PubMed

Aiewsakun, Pakorn; Simmonds, Peter

2018-02-20

The International Committee on Taxonomy of Viruses (ICTV) classifies viruses into families, genera and species and provides a regulated system for their nomenclature that is universally used in virus descriptions. Virus taxonomic assignments have traditionally been based upon virus phenotypic properties such as host range, virion morphology and replication mechanisms, particularly at family level. However, gene sequence comparisons provide a clearer guide to their evolutionary relationships and provide the only information that may guide the incorporation of viruses detected in environmental (metagenomic) studies that lack any phenotypic data. The current study sought to determine whether the existing virus taxonomy could be reproduced by examination of genetic relationships through the extraction of protein-coding gene signatures and genome organisational features. We found large-scale consistency between genetic relationships and taxonomic assignments for viruses of all genome configurations and genome sizes. The analysis pipeline that we have called 'Genome Relationships Applied to Virus Taxonomy' (GRAViTy) was highly effective at reproducing the current assignments of viruses at family level as well as inter-family groupings into orders. Its ability to correctly differentiate assigned viruses from unassigned viruses, and classify them into the correct taxonomic group, was evaluated by threefold cross-validation technique. This predicted family membership of eukaryotic viruses with close to 100% accuracy and specificity potentially enabling the algorithm to predict assignments for the vast corpus of metagenomic sequences consistently with ICTV taxonomy rules. In an evaluation run of GRAViTy, over one half (460/921) of (near)-complete genome sequences from several large published metagenomic eukaryotic virus datasets were assigned to 127 novel family-level groupings. If corroborated by other analysis methods, these would potentially more than double the number of eukaryotic virus families in the ICTV taxonomy. A rapid and objective means to explore metagenomic viral diversity and make informed recommendations for their assignments at each taxonomic layer is essential. GRAViTy provides one means to make rule-based assignments at family and order levels in a manner that preserves the integrity and underlying organisational principles of the current ICTV taxonomy framework. Such methods are increasingly required as the vast virosphere is explored.

Immunogenicity and Protection Against Influenza H7N3 in Mice by Modified Vaccinia Virus Ankara Vectors Expressing Influenza Virus Hemagglutinin or Neuraminidase.

PubMed

Meseda, Clement A; Atukorale, Vajini; Soto, Jackeline; Eichelberger, Maryna C; Gao, Jin; Wang, Wei; Weiss, Carol D; Weir, Jerry P

2018-03-29

Influenza subtypes such as H7 have pandemic potential since they are able to infect humans with severe consequences, as evidenced by the ongoing H7N9 infections in China that began in 2013. The diversity of H7 viruses calls for a broadly cross-protective vaccine for protection. We describe the construction of recombinant modified vaccinia virus Ankara (MVA) vectors expressing the hemagglutinin (HA) or neuraminidase (NA) from three H7 viruses representing both Eurasian and North American H7 lineages - A/mallard/Netherlands/12/2000 (H7N3), A/Canada/rv444/2004 (H7N3), and A/Shanghai/02/2013 (H7N9). These vectors were evaluated for immunogenicity and protective efficacy against H7N3 virus in a murine model of intranasal challenge. High levels of H7-, N3-, and N9-specific antibodies, including neutralizing antibodies, were induced by the MVA-HA and MVA-NA vectors. Mice vaccinated with MVA vectors expressing any of the H7 antigens were protected, suggesting cross-protection among H7 viruses. In addition, MVA vectors expressing N3 but not N9 elicited protection against H7N3 virus challenge. Similar outcomes were obtained when immune sera from MVA vector-immunized mice were passively transferred to naïve mice prior to challenge with the H7N3 virus. The results support the further development of an MVA vector platform as a candidate vaccine for influenza strains with pandemic potential.

The design and performance of high resolution échelle spectrographs in astronomy

NASA Astrophysics Data System (ADS)

Barnes, Stuart

The design and performance of several high resolution spectrographs for use in astronomy will be described. After a basic outline of the required theory, the design and performance of HERCULES will be presented. HERCULES is an R2 spectrograph fibre-fed from the MJUO 1-m telescope. The échelle grating has 31.6 grooves/mm and it uses a BK7 prism with a 50° apex angle in double-pass for cross-dispersion. A folded Schmidt camera is used for imaging. With a detector having an area 50 x 50 mm, and pixels less than 25 µm, HERCULES is capable of resolving powers of 40,000 to 80,000 and wavelength coverage from 380 to 880 nm. The total throughput (from the fibre entrance to the CCD) is expected to be nearly 20% (in 1" seeing). Measured efficiencies are only slightly less than this. HERCULES is also shown to be capable of excellent radial velocity precision with no apparent difference between long-term and short-term stability. Several significant upgrade options are also described. As part of the evolution of the design of a high resolution spectrograph for SALT, several instruments were developed for 10-metre class telescopes. Early designs, based in part on the successful HERCULES design, did not meet the requirements of a number of potential users, due in particular to the limited ability to inter-leave object and sky orders. This resulted in the design of SALT HRS R2 which uses a mosaic of two 308 x 413 mm R2 échelle gratings with 87 grooves/mm. Cross-dispersion is achieved with a pair of large 40° apex angle BK7 prisms used in double-pass. The échelle grating accepts a 365-mm collimated beam. The camera is a catadioptric system having a 1.2-m primary mirror and three lenses made of BK7 each around 850 mm in diameter. Complete unvignetted (except by the CCD obstruction) wavelength coverage from 370nm to 890nm is possible on a mosaic of three 2k by 4k CCDS with 15 µm pixels. A maximum resolving power of R ≈ 80,000 is possible. For immunity to atmospheric pressure and temperature changes the entire spectrograph is designed to be housed inside either a helium atmosphere or a light vacuum. The spectrograph chamber is nearly seven metres long. An alternative to the R2 SALT HRS is also described. This instrument is an R4 dual beam spectrograph based on a white pupil layout. The design is based on suggestions by B. Delabre and follows closely this authors SOAR HRS instrument. SALT HRS R4 uses volume-phased holographic gratings for cross-dispersion and a 836 x 204 mm échelle grating with 41.6 grooves/mm. The grating will be replicated from two smaller gratings onto a single Zerodur blank. The spectrograph is split into blue and red arms by a dichroic located near the white pupil relay intermediate focus. Wavelengths from 370 nm to 890 nm are covered by two fixed format blue and red dedicated dioptric cameras. The detectors will be a single 2k by 4k CCD with 15 µm pixels for the blue camera and a 4k by 4k CCD with 15 µm pixels for the red. The size of the cameras is reduced significantly by white pupil demagnification from an initial 200-mm diameter collimated beam incident on the échelle grating to around 100 mm (in undispersed light) on the VPH gratings. The final SALT HRS R4 instrument is also designed to be immersed in a vacuum vessel which is considerably smaller than that proposed for the R2 spectrograph. SALT HRS R4 is currently being developed in detail and will be presented for a critical design review in 2005 April.

The Role of Severe Acute Respiratory Syndrome (SARS)-Coronavirus Accessory Proteins in Virus Pathogenesis

PubMed Central

McBride, Ruth; Fielding, Burtram C.

2012-01-01

A respiratory disease caused by a novel coronavirus, termed the severe acute respiratory syndrome coronavirus (SARS-CoV), was first reported in China in late 2002. The subsequent efficient human-to-human transmission of this virus eventually affected more than 30 countries worldwide, resulting in a mortality rate of ~10% of infected individuals. The spread of the virus was ultimately controlled by isolation of infected individuals and there has been no infections reported since April 2004. However, the natural reservoir of the virus was never identified and it is not known if this virus will re-emerge and, therefore, research on this virus continues. The SARS-CoV genome is about 30 kb in length and is predicted to contain 14 functional open reading frames (ORFs). The genome encodes for proteins that are homologous to known coronavirus proteins, such as the replicase proteins (ORFs 1a and 1b) and the four major structural proteins: nucleocapsid (N), spike (S), membrane (M) and envelope (E). SARS-CoV also encodes for eight unique proteins, called accessory proteins, with no known homologues. This review will summarize the current knowledge on SARS-CoV accessory proteins and will include: (i) expression and processing; (ii) the effects on cellular processes; and (iii) functional studies. PMID:23202509

RNA synthetic mechanisms employed by diverse families of RNA viruses.

PubMed

McDonald, Sarah M

2013-01-01

RNA viruses are ubiquitous in nature, infecting every known organism on the planet. These viruses can also be notorious human pathogens with significant medical and economic burdens. Central to the lifecycle of an RNA virus is the synthesis of new RNA molecules, a process that is mediated by specialized virally encoded enzymes called RNA-dependent RNA polymerases (RdRps). RdRps directly catalyze phosphodiester bond formation between nucleoside triphosphates in an RNA-templated manner. These enzymes are strikingly conserved in their structural and functional features, even among diverse RNA viruses belonging to different families. During host cell infection, the activities of viral RdRps are often regulated by viral cofactor proteins. Cofactors can modulate the type and timing of RNA synthesis by directly engaging the RdRp and/or by indirectly affecting its capacity to recognize template RNA. High-resolution structures of RdRps as apoenzymes, bound to RNA templates, in the midst of catalysis, and/or interacting with regulatory cofactor proteins, have dramatically increased our understanding of viral RNA synthetic mechanisms. Combined with elegant biochemical studies, such structures are providing a scientific platform for the rational design of antiviral agents aimed at preventing and treating RNA virus-induced diseases. Copyright © 2013 John Wiley & Sons, Ltd.

The Mars Microbeam Raman Spectrometer: An Improved Advanced Brassboard

NASA Technical Reports Server (NTRS)

Haskin, L. A.; Wang, Alian

2003-01-01

An advanced brassboard (ADBB) of the Mars Miscrobeam Raman Spectrometer is being developed. The probe and spectrograph have been redesigned with improved optics and the electronics have been miniaturized. The modified optical design in the probe and spectrograph provides better spectral resolution than the previous model and enables the probe design to be more compatible with robotic arm deployment. The CCD detector is now cooled thermoelectrically in anticipation of eventual terrestrial field testing of the instrument.

Reduction of spectra exposed by the 700mm CCD camera of the Ondřejov telescope coudé spectrograph

NASA Astrophysics Data System (ADS)

Skoda, Petr; Slechta, Miroslav

We present a brief cook-book for the reduction of spectra exposed by the Ondřejov 2-meter telescope coudé spectrograph. For the data reduction, we use standard IRAF packages running on Solaris and Linux. The sequence of commands is given for the typical reduction session together with short explanation and detailed list of parameter settings. The reduction progress is illustrated by example plots.

Status of the JWST Science Instrument Payload

NASA Technical Reports Server (NTRS)

Greenhouse, Matt

2016-01-01

The James Webb Space Telescope (JWST) Integrated Science Instrument Module (ISIM) system consists of five sensors (4 science): Mid-Infrared Instrument (MIRI), Near Infrared Imager and Slitless Spectrograph (NIRISS), Fine Guidance Sensor (FGS), Near InfraRed Camera (NIRCam), Near InfraRed Spectrograph (NIRSpec); and nine instrument support systems: Optical metering structure system, Electrical Harness System; Harness Radiator System, ISIM Electronics Compartment, ISIM Remote Services Unit, Cryogenic Thermal Control System, Command and Data Handling System, Flight Software System, Operations Scripts System.

Optical design concept for the Giant Magellan Telescope Multi-object Astronomical and Cosmological Spectrograph (GMACS)

NASA Astrophysics Data System (ADS)

Schmidt, Luke M.; Ribeiro, Rafael; Taylor, Keith; Jones, Damien; Prochaska, Travis; DePoy, Darren L.; Marshall, Jennifer L.; Cook, Erika; Froning, Cynthia; Ji, Tae-Geun; Lee, Hye-In; Mendes de Oliveira, Claudia; Pak, Soojong; Papovich, Casey

2016-08-01

We present a preliminary conceptual optical design for GMACS, a wide field, multi-object, optical spectrograph currently being developed for the Giant Magellan Telescope (GMT). We include details of the optical design requirements derived from the instrument scientific and technical objectives and demonstrate how these requirements are met by the current design. Detector specifications, field acquisition/alignment optics, and optical considerations for the active flexure control system are also discussed.

A Grazing Incidence Spectrograph as Applied to Vacuum Ultraviolet, Soft X-Ray, Pulsed Plasma Sources.

DTIC Science & Technology

A 2.2-meter variable angle of incidence grazing incidence spectrograph is described for photographic recording of spectra down to 10A. Also a method for determining the absolute total fluence from a pulsed plasma source, knowing the absolute sensitivity of the instrument, is described. Spectra are presented from a low-inductance sliding spark gap and a 20-kj dense plasma focus . A program for spectram analysis is included. (Modified author abstract)

Emission Spectroscopy of the Interior of Optically Dense Post-Detonation Fireballs

DTIC Science & Technology

2013-03-01

sample. Light from the fiber optics was sent to spectrograph located in a shielded observation room several meters away from the explosive charge. The...spectrograph was constructed from a 1/8 m spectrometer (Oriel) interfaced to a 4096 pixel line-scan camera (Basler Sprint ) with a data collection rate... 400 ) 45 4000 (200) … FIG. 3. Time-resolved emission spectra obtained from detonation of 20 g charges of RDX containing 20 wt. % aluminum nanoparticles

Integrating TV/digital data spectrograph system

NASA Technical Reports Server (NTRS)

Duncan, B. J.; Fay, T. D.; Miller, E. R.; Wamsteker, W.; Brown, R. M.; Neely, P. L.

1975-01-01

A 25-mm vidicon camera was previously modified to allow operation in an integration mode for low-light-level astronomical work. The camera was then mated to a low-dispersion spectrograph for obtaining spectral information in the 400 to 750 nm range. A high speed digital video image system was utilized to digitize the analog video signal, place the information directly into computer-type memory, and record data on digital magnetic tape for permanent storage and subsequent analysis.

Cryostat and CCD for MEGARA at GTC

NASA Astrophysics Data System (ADS)

Castillo-Domínguez, E.; Ferrusca, D.; Tulloch, S.; Velázquez, M.; Carrasco, E.; Gallego, J.; Gil de Paz, A.; Sánchez, F. M.; Vílchez Medina, J. M.

2012-09-01

MEGARA (Multi-Espectrógrafo en GTC de Alta Resolución para Astronomía) is the new integral field unit (IFU) and multi-object spectrograph (MOS) instrument for the GTC. The spectrograph subsystems include the pseudo-slit, the shutter, the collimator with a focusing mechanism, pupil elements on a volume phase holographic grating (VPH) wheel and the camera joined to the cryostat through the last lens, with a CCD detector inside. In this paper we describe the full preliminary design of the cryostat which will harbor the CCD detector for the spectrograph. The selected cryogenic device is an LN2 open-cycle cryostat which has been designed by the "Astronomical Instrumentation Lab for Millimeter Wavelengths" at INAOE. A complete description of the cryostat main body and CCD head is presented as well as all the vacuum and temperature sub-systems to operate it. The CCD is surrounded by a radiation shield to improve its performance and is placed in a custom made mechanical mounting which will allow physical adjustments for alignment with the spectrograph camera. The 4k x 4k pixel CCD231 is our selection for the cryogenically cooled detector of MEGARA. The characteristics of this CCD, the internal cryostat cabling and CCD controller hardware are discussed. Finally, static structural finite element modeling and thermal analysis results are shown to validate the cryostat model.

Spectrographs for astrophotonics.

PubMed

Blind, N; Le Coarer, E; Kern, P; Gousset, S

2017-10-30

The next generation of extremely large telescopes (ELT), with diameters up to 39 meters, is planned to begin operation in the next decade and promises new challenges in the development of instruments since the instrument size increases in proportion to the telescope diameter D, and the cost as D 2 or faster. The growing field of astrophotonics (the use of photonic technologies in astronomy) could solve this problem by allowing mass production of fully integrated and robust instruments combining various optical functions, with the potential to reduce the size, complexity and cost of instruments. Astrophotonics allows for a broad range of new optical functions, with applications ranging from sky background filtering, high spatial and spectral resolution imaging and spectroscopy. In this paper, we want to provide astronomers with valuable keys to understand how photonics solutions can be implemented (or not) according to the foreseen applications. The paper introduces first key concepts linked to the characteristics of photonics technologies, placed in the framework of astronomy and spectroscopy. We then describe a series of merit criteria that help us determine the potential of a given micro-spectrograph technology for astronomy applications, and then take an inventory of the recent developments in integrated micro-spectrographs with potential for astronomy. We finally compare their performance, to finally draw a map of typical science requirements and pin the identified integrated technologies on it. We finally emphasize the necessary developments that must support micro-spectrograph in the coming years.

EGRAM- ECHELLE SPECTROGRAPH DESIGN AID

NASA Technical Reports Server (NTRS)

Dantzler, A. A.

1994-01-01

EGRAM aids in the design of spectrographic systems that utilize an echelle-first order cross disperser combination. This optical combination causes a two dimensional echellogram to fall on a detector. EGRAM describes the echellogram with enough detail to allow the user to effectively judge the feasibility of the spectrograph's design. By iteratively altering system parameters, the desired echellogram can be achieved without making a physical model. EGRAM calculates system parameters which are accurate to the first order and compare favorably to results from ray tracing techniques. The spectrographic system modelled by EGRAM consists of an entrance aperture, collimator, echelle, cross dispersion grating, focusing options, and a detector. The system is assumed to be free of aberrations and the echelle, cross disperser, and detector should be planar. The EGRAM program is menu driven and has a HELP facility. The user is prompted for information such as minimum and maximum wavelengths, slit dimensions, ruling frequencies, detector geometry, and angle of incidence. EGRAM calculates the resolving power and range of order numbers covered by the echellogram. A numerical map is also produced. This tabulates the order number, slit bandpass, and high/middle/low wavelengths. EGRAM can also compute the centroid coordinates of a specific wavelength and order (or vice versa). EGRAM is written for interactive execution and is written in Microsoft BASIC A. It has been implemented on an IBM PC series computer operating under DOS. EGRAM was developed in 1985.

Fiber optical cable and connector system (FOCCoS) for PFS/ Subaru

NASA Astrophysics Data System (ADS)

de Oliveira, Antonio Cesar; de Oliveira, Lígia Souza; de Arruda, Marcio V.; Souza Marrara, Lucas; dos Santos, Leandro H.; Ferreira, Décio; dos Santos, Jesulino B.; Rosa, Josimar A.; Junior, Orlando V.; Pereira, Jeferson M.; Castilho, Bruno; Gneiding, Clemens; Junior, Laerte S.; de Oliveira, Claudia M.; Gunn, James; Ueda, Akitoshi; Takato, Naruhisa; Shimono, Atsushi; Sugai, Hajime; Karoji, Hiroshi; Kimura, Masahiko; Tamura, Naoyuki; Wang, Shiang-Yu; Murray, Graham; Le Mignant, David; Madec, Fabrice; Jaquet, Marc; Vives, Sebastien; Fisher, Charlie; Braun, David; Schwochert, Mark; Reiley, Daniel J.

2014-07-01

FOCCoS, "Fiber Optical Cable and Connector System" has the main function of capturing the direct light from the focal plane of Subaru Telescope using optical fibers, each one with a microlens in its tip, and conducting this light through a route containing connectors to a set of four spectrographs. The optical fiber cable is divided in 3 different segments called Cable A, Cable B and Cable C. Multi-fibers connectors assure precise connection among all optical fibers of the segments, providing flexibility for instrument changes. To assure strong and accurate connection, these sets are arranged inside two types of assemblies: the Tower Connector, for connection between Cable C and Cable B; and the Gang Connector, for connection between Cable B and Cable A. Throughput tests were made to evaluate the efficiency of the connections. A lifetime test connection is in progress. Cable C is installed inside the PFI, Prime Focus Instrument, where each fiber tip with a microlens is bonded to the end of the shaft of a 2-stage piezo-electric rotatory motor positioner; this assembly allows each fiber to be placed anywhere within its patrol region, which is 9.5mm diameter.. Each positioner uses a fiber arm to support the ferrule, the microlens, and the optical fiber. 2400 of these assemblies are arranged on a motor bench plate in a hexagonal-closed-packed disposition. All optical fibers from Cable C, protected by tubes, pass through the motors' bench plate, three modular plates and a strain relief box, terminating at the Tower Connector. Cable B is permanently installed at Subaru Telescope structure, as a link between Cable C and Cable A. This cable B starts at the Tower Connector device, placed on a lateral structure of the telescope, and terminates at the Gang Connector device. Cable B will be routed to minimize the compression, torsion and bending caused by the cable weight and telescope motion. In the spectrograph room, Cable A starts at the Gang Connector, crosses a distribution box and terminates in a slit device. Each slit device receives approximately 600 optical fibers, linearly arrayed in a curve for better orientation of the light to the spectrograph collimator mirror. Four sets of Gang Connectors, distribution boxes and Slit devices complete one Cable A. This paper will review the general design of the FOCCoS subsystem, methods used to manufacture the involved devices, and the needed tests results to evaluate the total efficiency of the set.

Batman flies: a compact spectro-imager for space observation

NASA Astrophysics Data System (ADS)

Zamkotsian, Frederic; Ilbert, Olivier; Zoubian, Julien; Delsanti, Audrey; Boissier, Samuel; Lancon, Ariane

2017-11-01

Multi-object spectroscopy (MOS) is a key technique for large field of view surveys. MOEMS programmable slit masks could be next-generation devices for selecting objects in future infrared astronomical instrumentation for space telescopes. MOS is used extensively to investigate astronomical objects by optimizing the Signal-to-Noise Ratio (SNR): high precision spectra are obtained and the problem of spectral confusion and background level occurring in slitless spectroscopy is cancelled. Fainter limiting fluxes are reached and the scientific return is maximized both in cosmology and in legacy science. Major telescopes around the world are equipped with MOS in order to simultaneously record several hundred spectra in a single observation run. Next generation MOS for space like the Near Infrared Multi-Object Spectrograph (NIRSpec) for the James Webb Space Telescope (JWST) require a programmable multi-slit mask. Conventional masks or complex fiber-optics-based mechanisms are not attractive for space. The programmable multi-slit mask requires remote control of the multislit configuration in real time. During the early-phase studies of the European Space Agency (ESA) EUCLID mission, a MOS instrument based on a MOEMS device has been assessed. Due to complexity and cost reasons, slitless spectroscopy was chosen for EUCLID, despite a much higher efficiency with slit spectroscopy. A promising possible solution is the use of MOEMS devices such as micromirror arrays (MMA) [1,2,3] or micro-shutter arrays (MSA) [4]. MMAs are designed for generating reflecting slits, while MSAs generate transmissive slits. In Europe an effort is currently under way to develop single-crystalline silicon micromirror arrays for future generation infrared multi-object spectroscopy (collaboration LAM / EPFL-CSEM) [5,6]. By placing the programmable slit mask in the focal plane of the telescope, the light from selected objects is directed toward the spectrograph, while the light from other objects and from the sky background is blocked. To get more than 2 millions independent micromirrors, the only available component is a Digital Micromirror Device (DMD) chip from Texas Instruments (TI) that features 2048 x 1080 mirrors and a 13.68μm pixel pitch. DMDs have been tested in space environment (-40°C, vacuum, radiations) by LAM and no showstopper has been revealed [7]. We are presenting in this paper a DMD-based spectrograph called BATMAN, including two arms, one spectroscopic channel and one imaging channel. This instrument is designed for getting breakthrough results in several science cases, from high-z galaxies to nearby galaxies and Trans-Neptunian Objects of Kuiper Belt.

Conceptualizing Fraudulent Studies as Viruses: New Models for Handling Retractions

ERIC Educational Resources Information Center

Montgomery, Kathleen; Oliver, Amalya L.

2017-01-01

This paper addresses the growing problem of retractions in the scientific literature of publications that contain bad data (i.e., fabricated, falsified, or containing error), also called "false science." While the problem is particularly acute in the biomedical literature because of the life-threatening implications when treatment…

An in-depth review of NDV, including epidemiology and molecular diagnostics

USDA-ARS?s Scientific Manuscript database

Birds infected with virulent strains of avian paramyxovirus serotype 1 (APMV-1), also known as Newcastle disease virus (NDV), and pigeon PMV-1 (PPMV-1)are defined as having Newcastle disease (ND), which in the United States is sometimes called Exoctic Newcastle disease (END). Infections with virule...

Newcastle Disease: Progress and gaps in the development of vaccines and diagnostic tools

USDA-ARS?s Scientific Manuscript database

Newcastle disease (ND) is a contagious disease of birds that can have severe economic consequences for any poultry producer, including a serious impact on the international trade of poultry and eggs. Newcastle disease virus (NDV) isolates are also called avian paramyxovirus serotype-1 isolates, but ...