On the relationship between satellite-retrieved surface temperature fronts and chlorophyll a in the western South Atlantic

NASA Astrophysics Data System (ADS)

Saraceno, Martin; Provost, Christine; Piola, Alberto R.

2005-11-01

The time-space distribution of chlorophyll a in the southwestern Atlantic is examined using 6 years (1998-2003) of sea surface color images from Sea-viewing Wide Field of View Sensor (SeaWiFS). Chlorophyll a (chl a) distribution is confronted with sea surface temperature (SST) fronts retrieved from satellite imagery. Histogram analysis of the color, SST, and SST gradient data sets provides a simple procedure for pixel classification from which eight biophysical regions in the SWA are identified, including three new regions with regard to Longhurst (1998) work: Patagonian Shelf Break (PSB), Brazil Current Overshoot, and Zapiola Rise region. In the PSB region, coastal-trapped waves are suggested as a possible mechanism leading to the intraseasonal frequencies observed in SST and chl a. Mesoscale activity associated with the Brazil Current Front and, in particular, eddies drifting southward is probably responsible for the high chl a values observed throughout the Brazil Current Overshoot region. The Zapiola Rise is characterized by a local minimum in SST gradient magnitudes and shows chl a maximum values in February, 3 months later than the austral spring bloom of the surroundings. Significant interannual variability is present in the color imagery. In the PSB, springs and summers with high chl a concentrations seem associated with stronger local northerly wind speed, and possible mechanisms are discussed. Finally, the Brazil-Malvinas front is detected using both SST gradient and SeaWiFS images. The time-averaged position of the front at 54.2°W is estimated at 38.9°S and its alongshore migration of about 300 km.

Sea Surface Temperature Products and Research Associated with GHRSST

NASA Astrophysics Data System (ADS)

Kaiser-Weiss, Andrea K.; Minnett, Peter J.; Kaplan, Alexey; Wick, Gary A.; Castro, Sandra; Llewellyn-Jones, David; Merchant, Chris; LeBorgne, Pierre; Beggs, Helen; Donlon, Craig J.

2012-03-01

GHRSST serves its user community through the specification of operational Sea Surface Temperature (SST) products (Level 2, Level 3 and Level 4) based on international consensus. Providers of SST data from individual satellites create and deliver GHRSST-compliant near-real time products to a global GHRSST data assembly centre and a long-term stewardship facility. The GHRSST-compliant data include error estimates and supporting data for interpretation. Groups organised within GHRSST perform research on issues relevant to applying SST for air-sea exchange, for instance the Diurnal Variability Working Group (DVWG) analyses the evolution of the skin temperature. Other GHRSST groups concentrate on improving the SST estimate (Estimation and Retrievals Working Group EARWiG) and on improving the error characterization, (Satellite SST Validation Group, ST-VAL) and on improving the methods for SST analysis (Inter-Comparison Technical Advisory Group, IC-TAG). In this presentation we cover the data products and the scientific activities associated with GHRSST which might be relevant for investigating ocean-atmosphere interactions.

Sea surface temperature: Observations from geostationary satellites

NASA Astrophysics Data System (ADS)

Bates, John J.; Smith, William L.

1985-11-01

A procedure is developed for estimating sea surface temperatures (SST) from multispectral image data acquired from the VISSR atmospheric sounder (VAS) on the geostationary GOES satellites. Theoretical regression equations for two and three infrared window channels are empirically tuned by using clear field of view satellite radiances matched with reports of SST from NOAA fixed environmental buoys from 1982. The empirical regression equations are then used to produce daily regional analyses of SST. The daily analyses are used to study the response of SST's to the passage of Hurricane Alicia (1983) and Hurricane Debbie (1982) and are also used as a first guess surface temperature in the retrieval of atmospheric temperature and moisture profiles over the oceanic regions. Monthly mean SST's for the western North Atlantic and the eastern equatorial Pacific during March and July 1982 were produced for use in the NASA/JPL SST intercomparison workshop series. Workshop results showed VAS SST's have a scatter of 0.8°-1.0°C and a slight warm bias with respect to the other measurements of SST. Subsequently, a second set of VAS/ buoy matches collected during 1983 and 1984 was used to produce a set of bias corrected regression relations for VAS.

Global Ocean Evaporation Increases Since 1960 in Climate Reanalyses: How Accurate Are They?

NASA Technical Reports Server (NTRS)

Robertson, Franklin R.; Roberts, Jason B.; Bosilovich, Michael G.

2016-01-01

AGCMs w/ Specified SSTs (AMIPs) GEOS-5, ERA-20CM Ensembles Incorporate best historical estimates of SST, sea ice, radiative forcing Atmospheric "weather noise" is inconsistent with specified SST. Instantaneous Sfc fluxes can be wrong sign (e.g. Indian Ocean Monsoon, high latitude oceans). Averaging over ensemble members helps isolate SST-forced signal. Reduced Observational Reanalyses: NOAA 20CR V2C, ERA-20C, JRA-55C Incorporate observed Sfc Press (20CR), Marine Winds (ERA-20C) and rawinsondes (JRA-55C) to recover much of true synoptic or weather w/o shock of new sat obs. Comprehensive Reanalyses (MERRA-2) Full suite of observational constraints- both conventional and remote sensing. But... substantial uncertainties owing to evolving satellite observing system. Multi-source Statistically Blended OAFlux, LargeYeager Blend reanalysis, satellite, and ocean buoy information. While climatological biases are removed, non-physical trends or variations in components remain. Satellite Retrievals GSSTF3, SeaFlux, HOAPS3... Global coverage. Retrieved near sfc wind speed, & humidity used with SST to drive accurate bulk aerodynamic flux estimates. Satellite inter-calibration, spacecraft pointing variations crucial. Short record ( late 1987-present). In situ Measurements ICOADS, IVAD, Res Cruises VOS and buoys offer direct measurements. Sparse data coverage (esp south of 30S. Changes in measurement techniques (e.g. shipboard anemometer height).

Improvements to the swath-level near-surface atmospheric state parameter retrievals within the NRL Ocean Surface Flux System (NFLUX)

NASA Astrophysics Data System (ADS)

May, J. C.; Rowley, C. D.; Meyer, H.

2017-12-01

The Naval Research Laboratory (NRL) Ocean Surface Flux System (NFLUX) is an end-to-end data processing and assimilation system used to provide near-real-time satellite-based surface heat flux fields over the global ocean. The first component of NFLUX produces near-real-time swath-level estimates of surface state parameters and downwelling radiative fluxes. The focus here will be on the satellite swath-level state parameter retrievals, namely surface air temperature, surface specific humidity, and surface scalar wind speed over the ocean. Swath-level state parameter retrievals are produced from satellite sensor data records (SDRs) from four passive microwave sensors onboard 10 platforms: the Special Sensor Microwave Imager/Sounder (SSMIS) sensor onboard the DMSP F16, F17, and F18 platforms; the Advanced Microwave Sounding Unit-A (AMSU-A) sensor onboard the NOAA-15, NOAA-18, NOAA-19, Metop-A, and Metop-B platforms; the Advanced Technology Microwave Sounder (ATMS) sensor onboard the S-NPP platform; and the Advanced Microwave Scannin Radiometer 2 (AMSR2) sensor onboard the GCOM-W1 platform. The satellite SDRs are translated into state parameter estimates using multiple polynomial regression algorithms. The coefficients to the algorithms are obtained using a bootstrapping technique with all available brightness temperature channels for a given sensor, in addition to a SST field. For each retrieved parameter for each sensor-platform combination, unique algorithms are developed for ascending and descending orbits, as well as clear vs cloudy conditions. Each of the sensors produces surface air temperature and surface specific humidity retrievals. The SSMIS and AMSR2 sensors also produce surface scalar wind speed retrievals. Improvement is seen in the SSMIS retrievals when separate algorithms are used for the even and odd scans, with the odd scans performing better than the even scans. Currently, NFLUX treats all SSMIS scans as even scans. Additional improvement in all of the surface retrievals comes from using a 3-hourly SST field, as opposed to a daily SST field.

Cost-Effectiveness of Solitaire Stent Retriever Thrombectomy for Acute Ischemic Stroke

PubMed Central

Shireman, Theresa I.; Wang, Kaijun; Saver, Jeffrey L.; Goyal, Mayank; Bonafé, Alain; Diener, Hans-Christoph; Levy, Elad I.; Pereira, Vitor M.; Albers, Gregory W.; Cognard, Christophe; Hacke, Werner; Jansen, Olav; Jovin, Tudor G.; Mattle, Heinrich P.; Nogueira, Raul G.; Siddiqui, Adnan H.; Yavagal, Dileep R.; Devlin, Thomas G.; Lopes, Demetrius K.; Reddy, Vivek K.; de Rochemont, Richard du Mesnil; Jahan, Reza; Vilain, Katherine A.; House, John; Lee, Jin-Moo; Cohen, David J.

2017-01-01

Background and Purpose Clinical trials have demonstrated improved 90-day outcomes for patients with acute ischemic stroke treated with stent retriever thrombectomy plus tissue-type plasminogen activator (SST+tPA) compared with tPA. Previous studies suggested that this strategy may be cost-effective, but models were derived from pooled data and older assumptions. Methods In this prospective economic substudy conducted alongside the SWIFT-PRIME trial (Solitaire With the Intention for Thrombectomy as Primary Endovascular Treatment for Acute Ischemic Stroke), in-trial costs were measured for patients using detailed medical resource utilization and hospital billing data. Utility weights were assessed at 30 and 90 days using the EuroQol-5 dimension questionnaire. Post-trial costs and life-expectancy were estimated for each surviving patient using a model based on trial data and inputs derived from a contemporary cohort of ischemic stroke survivors. Results Index hospitalization costs were $17 183 per patient higher for SST+tPA than for tPA ($45 761 versus $28 578; P<0.001), driven by initial procedure costs. Between discharge and 90 days, costs were $4904 per patient lower for SST+tPA than for tPA ($11 270 versus $16 174; P=0.014); total 90-day costs remained higher with SST+tPA ($57 031 versus $44 752; P<0.001). Higher utility values for SST+tPA led to higher in-trial quality-adjusted life years (0.131 versus 0.105; P=0.005). In lifetime projections, SST+tPA was associated with substantial gains in quality-adjusted life years (6.79 versus 5.05), cost savings of $23 203 per patient and was economically dominant when compared with tPA in 90% of bootstrap replicates. Conclusions Among patients with acute ischemic stroke enrolled in the SWIFT-PRIME trial, SST increased initial treatment costs, but was projected to improve quality-adjusted life-expectancy and reduce healthcare costs over a lifetime horizon compared with tPA. PMID:28028150

Study of Sea Surface Temperatures changes due to tropical cyclone fanoos in the southwest Bay of Bengal using satellite and argo observations

NASA Astrophysics Data System (ADS)

Krishna Kailasam, Muni

Sea surface temperature (SST) plays an important role in the studies of global climate system and as a boundary condition for operational numerical forecasts. Estimation of SST has tra-ditionally been performed with satellite based sensors operating in the infrared (IR) portion of the electromagnetic spectrum, where the ocean emissivity is close to unity. The National Oceanic and Atmospheric Administration (NOAA) satellite series, the GOES Imagers on the Geostationary Operational Environmental Satellites, the Along Track Scanning Radiometer (ATSR) on the European Remote Sensing satellites and the Moderate Resolution Imaging Spectroradiometer (MODIS) on the NASA EOS platform are successful examples of IR sen-sors currently used for operational SST retrievals. Significant progress in SST retrieval from remote sensing data came with the introduction of a new low-frequency channel (10.7 GHz) on microwave (MW) sensors. The anthropogenic effects over a period of time resulted in increase of infrared absorbers such as greenhouse gases and absorbing aerosol would produce increase of both daytime maximum and nighttime minimum temperatures. In contrast, the increases of visible reflectors such as sulfate aerosols and low cloud amount would result in a decrease of the daytime maximum temperature. Solar radiation, wind stress and vertical mixing are known to be the three major factors impacting the SST seasonal variations. In the present study, impact of absorbing aerosols on the sea surface temperature (SST) over Bay of Bengal (BoB) region was investigated. Increased aerosol loading over BoB was observed due to advection of aerosols from continental region consisting of absorbing particles primarily from dust and biomass burning. This increased loading over BoB resulted in reduction of surface reaching solar radiation. Tropical Rainfall Measuring Mission (TRMM) Microwave Imager (TMI) de-rived SST over BoB showed negative correlation with OMI-Aerosol Index (AI) (R = 0.87) and Terra/Aqua Moderate Resolution Imaging Spectroradiometer (MODIS) AOD550 (R = 0.77) suggesting reduction in SST due to absorption of incoming solar radiation by aerosols.

Value of Bulk Heat Flux Parameterizations for Ocean SST Prediction

DTIC Science & Technology

2008-01-01

Digital Environmental Model ( GDEM ) climatology (NAVO- CEANO, 2003). The density difference values were chosen so that the layers tend to become...Monthly mean temperature and salinity from the GDEM climatology in August are used to initialize the model. There is a relaxation to monthly mean...retrievals were used. In addition. Special Sensor Microwave Imager (SSM/1) and European Remote Sensing Satellite (ERS) data are used in ERA-40. The SST/Ice

Probing the Spatio-Temporal Characteristics of Temporal Aliasing Errors and their Impact on Satellite Gravity Retrievals

NASA Astrophysics Data System (ADS)

Wiese, D. N.; McCullough, C. M.

2017-12-01

Studies have shown that both single pair low-low satellite-to-satellite tracking (LL-SST) and dual-pair LL-SST hypothetical future satellite gravimetry missions utilizing improved onboard measurement systems relative to the Gravity Recovery and Climate Experiment (GRACE) will be limited by temporal aliasing errors; that is, the error introduced through deficiencies in models of high frequency mass variations required for the data processing. Here, we probe the spatio-temporal characteristics of temporal aliasing errors to understand their impact on satellite gravity retrievals using high fidelity numerical simulations. We find that while aliasing errors are dominant at long wavelengths and multi-day timescales, improving knowledge of high frequency mass variations at these resolutions translates into only modest improvements (i.e. spatial resolution/accuracy) in the ability to measure temporal gravity variations at monthly timescales. This result highlights the reliance on accurate models of high frequency mass variations for gravity processing, and the difficult nature of reducing temporal aliasing errors and their impact on satellite gravity retrievals.

Aerosol Correction for Remotely Sensed Sea Surface Temperatures From the NOAA AVHRR: Phase II

NASA Astrophysics Data System (ADS)

Nalli, N. R.; Ignatov, A.

2002-05-01

For over two decades, the National Oceanic and Atmospheric Administration (NOAA) has produced global retrievals of sea surface temperature (SST) using infrared (IR) data from the Advanced Very High Resolution Radiometer (AVHRR). The standard multichannel retrieval algorithms are derived from regression analyses of AVHRR window channel brightness temperatures against in situ buoy measurements under non-cloudy conditions thus providing a correction for IR attenuation due to molecular water vapor absorption. However, for atmospheric conditions with elevated aerosol levels (e.g., arising from dust, biomass burning and volcanic eruptions), such algorithms lead to significant negative biases in SST because of IR attenuation arising from aerosol absorption and scattering. This research presents the development of a 2nd-phase aerosol correction algorithm for daytime AVHRR SST. To accomplish this, a long-term (1990-1998), global AVHRR-buoy matchup database was created by merging the Pathfinder Atmospheres (PATMOS) and Oceans (PFMDB) data sets. The merged data are unique in that they include multi-year, global daytime estimates of aerosol optical depth (AOD) derived from AVHRR channels 1 and 2 (0.63 and 0.83 μ m, respectively), along with an effective Angstrom exponent derived from the AOD retrievals (Ignatov and Nalli, 2002). Recent enhancements in the aerosol data constitute an improvement over the Phase I algorithm (Nalli and Stowe, 2002) which relied only on channel 1 AOD and the ratio of normalized reflectance from channels 1 and 2. The Angstrom exponent and channel 2 AOD provide important statistical information about the particle size distribution of the aerosol. The SST bias can be parametrically expressed as a function of observed AVHRR channels 1 and 2 slant-path AOD, normalized reflectance ratio and the Angstrom exponent. Based upon these empirical relationships, aerosol correction equations are then derived for the daytime multichannel and nonlinear SST (MCSST and NLSST) algorithms. Separate sets of coefficients are utilized for two aerosol modes, these being stratospheric/tropospheric (e.g., volcanic aerosol) and tropospheric (e.g., dust, smoke). The algorithms are subsequently applied to retrospective PATMOS data to demonstrate the potential for climate applications. The minimization of cold biases in the AVHRR SST, as demonstrated in this work, should improve its overall utility for the general user community.

A Comparison Between SST and AOT Derived from AVHRR and MODIS Data in the Frame of the CREPAD Program

NASA Astrophysics Data System (ADS)

Robles-Gonzalez, Cristina; Fernandez-Renau, Alix; Lopez Gordillo, Noelia; Sevilla, Angel Garcia; Suarez, Juana Santana

2010-12-01

Since 1997, the INTA-CREPAD (Centre for REception, Processing, Archiving and Dissemination of Earth Observation Data) program distributes freely some of the most demanded low-resolution remote sensing products: SST, Ocean Chl-a, NDVI, AOD... The data input for such products are captured at the Canary Space Station (Centro Espacial de Canarias, CEC). The data sensors received at the station and used in the CREPAD program are AVHRR, SEAWIFS and MODIS. In this study SST and AOD retrieved by CREPAD algorithms from AVHRR and the SEADAS derived SST and AOD from MODIS have compared. SST values agree very well within 0.1±0.5oC and the coefficient of correlation of the images is 0.9. AOD validation gives good results taking into account the differences in the algorithms used. Mean AOD difference at 0.630 μm is 0.01±0.05 and the correlation coefficient is 0.6.

Seasonal trends of ACSPO VIIRS SST product characterized by the differences in orbital overlaps for various water types

NASA Astrophysics Data System (ADS)

Arnone, Robert; Vandermeulen, Ryan; Ignatov, Alexander; Cayula, Jean François

2015-05-01

The uncertainty of the Advanced Clear-Sky Processor for Oceans (ACSPO) Sea Surface Temperature (SST) products from the Visible Infrared Imaging Radiometer Suite (VIIRS) satellite is examined using consecutive orbital overlaps in coastal waters of the Gulf of Mexico. The overlapping region on the left and right side of the VIIRS swath at 23-35 degree latitude covers approximately 500 pixels, which occur within 100 minutes and can provide a total of 4 SST products (2 day and 2 night) per day. By assuming the ocean SST should be similar on each side of the swath in this short time period, diel changes are examined and the uncertainty of SST retrieval is determined by comparing with buoy-derived SST. The VIIRS ACSPO product from NOAA STAR was used to determine the difference in SST within the overlapping regions. These SST changes are evaluated between consecutive orbits to validate the accuracy of SST algorithms on each side of the swath at high sensor angles. The SST product differences across the swath can result from surface glint, sensor angular impacts and sensor characteristics such as half angle mirror side (HAM) and calibration. The absolute diurnal SST changes that can occur within 100 minutes are evaluated with the buoy and VIIRS-derived SST. Sensitivity of the SST to water types is evaluated by measuring diurnal differences for open ocean, shelf and coastal waters. The 100 minute VIIRS SST overlap shows the capability to monitor the diurnal ocean heating and cooling which are associated with water mass optical absorption. The seasonal trends of the difference in SST at the overlaps for these water masses were tracked on a monthly basis. The unique capability of using the same VIIRS sensor for self-characterization can provide a method to define the uncertainty of ocean products and characterize the diurnal changes for different water types.

Analysis of the VIIRS cloud mask, comparison with the NAVOCEANO cloud mask, and how they complement each other

NASA Astrophysics Data System (ADS)

Cayula, Jean-François P.; May, Douglas A.; McKenzie, Bruce D.

2014-05-01

The Visible Infrared Imaging Radiometer Suite (VIIRS) Cloud Mask (VCM) Intermediate Product (IP) has been developed for use with Suomi National Polar-orbiting Partnership (NPP) VIIRS Environmental Data Record (EDR) products. In particular, the VIIRS Sea Surface Temperature (SST) EDR relies on VCM to identify cloud contaminated observations. Unfortunately, VCM does not appear to perform as well as cloud detection algorithms for SST. This may be due to similar but different goals of the two algorithms. VCM is concerned with detecting clouds while SST is interested in identifying clear observations. The result is that in undetermined cases VCM defaults to "clear," while the SST cloud detection defaults to "cloud." This problem is further compounded because classic SST cloud detection often flags as "cloud" all types of corrupted data, thus making a comparison with VCM difficult. The Naval Oceanographic Office (NAVOCEANO), which operationally produces a VIIRS SST product, relies on cloud detection from the NAVOCEANO Cloud Mask (NCM), adapted from cloud detection schemes designed for SST processing. To analyze VCM, the NAVOCEANO SST process was modified to attach the VCM flags to all SST retrievals. Global statistics are computed for both day and night data. The cases where NCM and/or VCM tag data as cloud-contaminated or clear can then be investigated. By analyzing the VCM individual test flags in conjunction with the status of NCM, areas where VCM can complement NCM are identified.

Evaluation of the Precision of Satellite-Derived Sea Surface Temperature Fields

NASA Astrophysics Data System (ADS)

Wu, F.; Cornillon, P. C.; Guan, L.

2016-02-01

A great deal of attention has been focused on the temporal accuracy of satellite-derived sea surface temperature (SST) fields with little attention being given to their spatial precision. Specifically, the primary measure of the quality of SST fields has been the bias and variance of selected values minus co-located (in space and time) in situ values. Contributing values, determined by the location of the in situ values and the necessity that the satellite-derived values be cloud free, are generally widely separated in space and time hence provide little information related to the pixel-to-pixel uncertainty in the retrievals. But the main contribution to the uncertainty in satellite-derived SST retrievals relates to atmospheric contamination and because the spatial scales of atmospheric features are, in general, large compared with the pixel separation of modern infra-red sensors, the pixel-to-pixel uncertainty is often smaller than the accuracy determined from in situ match-ups. This makes selection of satellite-derived datasets for the study of submesoscale processes, for which the spatial structure of the upper ocean is significant, problematic. In this presentation we present a methodology to characterize the spatial precision of satellite-derived SST fields. The method is based on an examination of the high wavenumber tail of the 2-D spectrum of SST fields in the Sargasso Sea, a low energy region of the ocean close to the track of the MV Oleander, a container ship making weekly roundtrips between New York and Bermuda, with engine intake temperatures sampled every 75 m along track. Important spectral characteristics are the point at which the satellite-derived spectra separate from the Oleander spectra and the spectral slope following separation. In this presentation a number of high resolution 375 m to 10 km SST datasets are evaluated based on this approach.

Cost-Effectiveness of Solitaire Stent Retriever Thrombectomy for Acute Ischemic Stroke: Results From the SWIFT-PRIME Trial (Solitaire With the Intention for Thrombectomy as Primary Endovascular Treatment for Acute Ischemic Stroke).

PubMed

Shireman, Theresa I; Wang, Kaijun; Saver, Jeffrey L; Goyal, Mayank; Bonafé, Alain; Diener, Hans-Christoph; Levy, Elad I; Pereira, Vitor M; Albers, Gregory W; Cognard, Christophe; Hacke, Werner; Jansen, Olav; Jovin, Tudor G; Mattle, Heinrich P; Nogueira, Raul G; Siddiqui, Adnan H; Yavagal, Dileep R; Devlin, Thomas G; Lopes, Demetrius K; Reddy, Vivek K; du Mesnil de Rochemont, Richard; Jahan, Reza; Vilain, Katherine A; House, John; Lee, Jin-Moo; Cohen, David J

2017-02-01

Clinical trials have demonstrated improved 90-day outcomes for patients with acute ischemic stroke treated with stent retriever thrombectomy plus tissue-type plasminogen activator (SST+tPA) compared with tPA. Previous studies suggested that this strategy may be cost-effective, but models were derived from pooled data and older assumptions. In this prospective economic substudy conducted alongside the SWIFT-PRIME trial (Solitaire With the Intention for Thrombectomy as Primary Endovascular Treatment for Acute Ischemic Stroke), in-trial costs were measured for patients using detailed medical resource utilization and hospital billing data. Utility weights were assessed at 30 and 90 days using the EuroQol-5 dimension questionnaire. Post-trial costs and life-expectancy were estimated for each surviving patient using a model based on trial data and inputs derived from a contemporary cohort of ischemic stroke survivors. Index hospitalization costs were $17 183 per patient higher for SST+tPA than for tPA ($45 761 versus $28 578; P<0.001), driven by initial procedure costs. Between discharge and 90 days, costs were $4904 per patient lower for SST+tPA than for tPA ($11 270 versus $16 174; P=0.014); total 90-day costs remained higher with SST+tPA ($57 031 versus $44 752; P<0.001). Higher utility values for SST+tPA led to higher in-trial quality-adjusted life years (0.131 versus 0.105; P=0.005). In lifetime projections, SST+tPA was associated with substantial gains in quality-adjusted life years (6.79 versus 5.05), cost savings of $23 203 per patient and was economically dominant when compared with tPA in 90% of bootstrap replicates. Among patients with acute ischemic stroke enrolled in the SWIFT-PRIME trial, SST increased initial treatment costs, but was projected to improve quality-adjusted life-expectancy and reduce healthcare costs over a lifetime horizon compared with tPA. URL: http://www.clinicaltrials.gov. Unique identifier: NCT01657461. © 2016 American Heart Association, Inc.

OSI SAF Sea Surface Temperature reprocessing of MSG/SEVIRI archive.

NASA Astrophysics Data System (ADS)

Saux Picart, Stéphane; Legendre, Gerard; Marsouin, Anne; Péré, Sonia; Roquet, Hervé

2017-04-01

The Ocean and Sea-Ice Satellite Application Facility (OSI-SAF) of the European Organisation for the Exploitation of Meteorological Satellites (EUMETSAT) is planning to deliver a reprocessing of Sea Surface Temperature (SST) from Spinning Enhanced Visible and Infrared Imager/Meteosat Second Generation (SEVIRI/MSG) archive (2004-2012) by the end of 2016. This reprocessing is drawing from experiences of the OSI SAF team in near real time processing of MSG/SEVIRI data. The retrieval method consist in a non-linear split-window algorithm including the algorithm correction scheme developed by Le Borgne et al. (2011). The bias correction relies on simulations of infrared brightness temperatures performed using Numerical Weather Prediction model atmospheric profiles of water vapour and temperature, and RTTOV radiative transfer model. The cloud mask used is the Climate SAF reprocessing of the MSG/SEVIRI archive. It is consistent over the period in consideration. Atmospheric Saharan dusts have a strong impact on the retrieved SST, they are taken into consideration through the computation of the Saharan Dust Index (Merchant et al., 2006) which is then used to determine an empirical correction applied to SST. The MSG/SEVIRI SST reprocessing dataset consist in hourly level 3 composite of sub-skin temperature projected onto a regular 0.05° grid over the region delimited by 60N,60S and 60W,60E. This presentation gives an overview of the data and methods used for the reprocessing, the products and validation results against drifting buoys measurements extracted from the ERA Clim dataset.

Annual Progress Report on the Development of Waste Tank Leak Monitoring and Detection and Mitigation Activities in Support of M-45-08

DOE Office of Scientific and Technical Information (OSTI.GOV)

DEFIGH PRICE, C.

2000-09-25

Milestone M-45-09E of the Hanford Federal Facility Agreement and Consent Order (Tri-Party Agreement or TPA) [TPA 1996] requires submittal of an annual progress report on the development of waste tank leak detection, monitoring, and mitigation (LDMM) activities associated with the retrieval of waste from single-shell tanks (SSTs). This report details progress for fiscal year 2000, building on the current LDMM strategy and including discussion of technologies, applications, cost, schedule, and technical data. The report also includes discussion of demonstrations conducted and recommendations for additional testing. Tri-Party Agreement Milestones M-45-08A and M-45-08B required design and demonstration of LDMM systems for initialmore » retrieval of SST waste. These specific milestones have recently been deleted as part of the M-45-00A change package. Future LDMM development work has been incorporated into specific technology demonstration milestones and SST waste retrieval milestones in the M-45-03 and M-45-05 milestone series.« less

Novel sst2-selective somatostatin agonists. Three-dimensional consensus structure by NMR

PubMed Central

Grace, Christy Rani R.; Erchegyi, Judit; Koerber, Steven C.; Reubi, Jean Claude; Rivier, Jean; Riek, Roland

2008-01-01

The three-dimensional NMR structures of six octapeptide agonist analogues of somatostatin (SRIF) in the free form are described. These analogues, with the basic sequence H-DPhe/Phe2-c[Cys3-Xxx7-DTrp8-Lys9-Thr10-Cys14]-Thr-NH2 (the numbering refers to the position in native SRIF), with Xxx7 being Ala/Aph, exhibit potent and highly selective binding to human SRIF type 2 (sst2) receptors. The backbone of these sst2-selective analogues have the usual type-II’ β-turn reported in the literature for sst2/3/5-subtype-selective analogues. Correlating biological results and NMR studies led to the identification of the side chains of DPhe2, DTrp8 and Lys9 as the necessary components of the sst2 pharmacophore. This is the first study to show that the aromatic ring at position 7 (Phe7) is not critical for sst2 binding and that it plays an important role in sst3 and sst5 binding. This pharmacophore is therefore different from that proposed by others for sst2/3/5 analogues. PMID:16854054

Cloning of TaSST genes associated with water soluble carbohydrate content in bread wheat stems and development of a functional marker.

PubMed

Dong, Yan; Zhang, Yan; Xiao, Yonggui; Yan, Jun; Liu, Jindong; Wen, Weie; Zhang, Yong; Jing, Ruilian; Xia, Xianchun; He, Zhonghu

2016-05-01

We cloned TaSST genes, developed a gene-specific marker for TaSST-D1, and identified three QTL in the Doumai/Shi 4185 RIL population. TaSST-D1 is within one of the three QTL. Sucrose:sucrose-1-fructosyltransferase (1-SST), a critical enzyme in the fructan biosynthetic pathway, is significantly and positively associated with water soluble carbohydrate (WSC) content in bread wheat stems. In the present study, wheat 1-SST genes (TaSST) were isolated and located on chromosomes 4A, 7A and 7D. Sequence analysis of TaSST-D1 revealed 15 single nucleotide polymorphisms (SNP) in the third exon between cultivars with higher and lower WSC content. A cleaved amplified polymorphism sequence (CAPS) marker, WSC7D, based on the polymorphism at position 1216 (C-G) was developed to discriminate the two alleles. WSC7D was located on chromosome 7DS using a recombinant inbred line (RIL) population from a Doumai/Shi 4185 cross, and a set of Chinese Spring nullisomic-tetrasomic lines. TaSST-D1 co-segregated with the CAPS marker WSC7D and was linked to SNP marker BS00108793_51 on chromosome 7DS at a genetic distance of 6.1 cM. It explained 8.8, 10.9, and 11.3% of the phenotypic variances in trials at Beijing and Shijiazhuang as well as the averaged data from those environments, respectively. Two additional QTL (QWSC.caas-4BS and QWSC.caas-7AS) besides TaSST-D1 were mapped in the RIL population. One hundred and forty-nine Chinese wheat cultivars and advanced lines tested in four environments were used to validate a highly significant (P < 0.01) association between WSC7D and WSC content in wheat stems. WSC7D can be used as a gene-specific marker for improvement of stem WSC content in wheat breeding programs.

Orbitally-resolved SST Changes during the EOT: Results from IODP 342 Expedition

NASA Astrophysics Data System (ADS)

Liu, Z.; He, Y.; Wilson, P. A.; Pagani, M.

2014-12-01

Sea surface temperature (SST) changes during the Eocene-Oligocene climate transition were characterized by substantial cooling at high latitudes and less cooling in low latitudes, with little information from mid-latitudes so far. Taking advantage of the newly retrieved drift sediments from the IODP 342 Expedition, we aim to reconstruct SST changes at the mid-latitude Newfoundland region, at an unprecedented orbital resolution from Site U1411. During the period investigated, 32-36 Ma, the alkenone UK'37 values range from 0.65 to 0.95, with values all greater than 0.80 before the transition and lower values (<0.80) occurring approximately at the eccentricity minimum nodes after the transition. No immediate cooling associated with Oi-1 glaciation was observed. During the Oligocene, SSTs during warm epochs (corresponding to eccentricity maxima) were not significantly cooler than before. Overall, SST fluctuations appear to be modulated by orbital changes throughout the record, although more apparent due to larger amplitude of SST variability after the transition. We thus hypothesize that the mid-latitude Newfoundland region was largely bathed by low-latitude warm waters during the transition and that polar waters (fronts) reached to the region occasionally at periods of eccentricity minimum nodes during the Oligocene.

Review of technologies for the pretreatment of retrieved single-shell tank waste at Hanford

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gerber, M.A.

1992-08-01

The purpose of the study reported here was to identify and evaluate innovative processes that could be used to pretreat mixed waste retrieved from the 149 single-shell tanks (SSTs) on the US Department of Energy's (DOE) Hanford site. The information was collected as part of the Single Shell Tank Waste Treatment project at Pacific Northwest Laboratory (PNL). The project is being conducted for Westinghouse Hanford Company under their SST Disposal Program.

Review of technologies for the pretreatment of retrieved single-shell tank waste at Hanford

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gerber, M.A.

1992-08-01

The purpose of the study reported here was to identify and evaluate innovative processes that could be used to pretreat mixed waste retrieved from the 149 single-shell tanks (SSTs) on the US Department of Energy`s (DOE) Hanford site. The information was collected as part of the Single Shell Tank Waste Treatment project at Pacific Northwest Laboratory (PNL). The project is being conducted for Westinghouse Hanford Company under their SST Disposal Program.

Description of waste pretreatment and interfacing systems dynamic simulation model

DOE Office of Scientific and Technical Information (OSTI.GOV)

Garbrick, D.J.; Zimmerman, B.D.

1995-05-01

The Waste Pretreatment and Interfacing Systems Dynamic Simulation Model was created to investigate the required pretreatment facility processing rates for both high level and low level waste so that the vitrification of tank waste can be completed according to the milestones defined in the Tri-Party Agreement (TPA). In order to achieve this objective, the processes upstream and downstream of the pretreatment facilities must also be included. The simulation model starts with retrieval of tank waste and ends with vitrification for both low level and high level wastes. This report describes the results of three simulation cases: one based on suggestedmore » average facility processing rates, one with facility rates determined so that approximately 6 new DSTs are required, and one with facility rates determined so that approximately no new DSTs are required. It appears, based on the simulation results, that reasonable facility processing rates can be selected so that no new DSTs are required by the TWRS program. However, this conclusion must be viewed with respect to the modeling assumptions, described in detail in the report. Also included in the report, in an appendix, are results of two sensitivity cases: one with glass plant water recycle steams recycled versus not recycled, and one employing the TPA SST retrieval schedule versus a more uniform SST retrieval schedule. Both recycling and retrieval schedule appear to have a significant impact on overall tank usage.« less

Cloning, Developmental, and Tissue-Specific Expression of Sucrose:Sucrose 1-Fructosyl Transferase from Taraxacum officinale. Fructan Localization in Roots1

PubMed Central

Van den Ende, Wim; Michiels, An; Van Wonterghem, Dominik; Vergauwen, Rudy; Van Laere, André

2000-01-01

Sucrose:sucrose 1-fructosyl transferase (1-SST) is the key enzyme initiating fructan synthesis in Asteraceae. Using reverse transcriptase-PCR, we isolated the cDNA for 1-SST from Taraxacum officinale. The cDNA-derived amino acid sequence showed very high homology to other Asteracean 1-SSTs (Cichorium intybus 86%, Cynara scolymus 82%, Helianthus tuberosus 80%), but homology to 1-SST from Allium cepa (46%) and Aspergillus foetidus (18%) was much lower. Fructan concentrations, 1-SST activities, 1-SST protein, and mRNA concentrations were compared in different organs during vegetative and generative development of T. officinale plants. Expression of 1-SST was abundant in young roots but very low in leaves. 1-SST was also expressed at the flowering stages in roots, stalks, and receptacles. A good correlation was found between northern and western blots showing transcriptional regulation of 1-SST. At the pre-flowering stage, 1-SST mRNA concentrations and 1-SST activities were higher in the root phloem than in the xylem, resulting in the higher fructan concentrations in the phloem. Fructan localization studies indicated that fructan is preferentially stored in phloem parenchyma cells in the vicinity of the secondary sieve tube elements. However, inulin-like crystals occasionally appeared in xylem vessels. PMID:10806226

[Monitoring the thermal plume from coastal nuclear power plant using satellite remote sensing data: modeling, and validation].

PubMed

Zhu, Li; Zhao, Li-Min; Wang, Qiao; Zhang, Ai-Ling; Wu, Chuan-Qing; Li, Jia-Guo; Shi, Ji-Xiang

2014-11-01

Thermal plume from coastal nuclear power plant is a small-scale human activity, mornitoring of which requires high-frequency and high-spatial remote sensing data. The infrared scanner (IRS), on board of HJ-1B, has an infrared channel IRS4 with 300 m and 4-days as its spatial and temporal resolution. Remote sensing data aquired using IRS4 is an available source for mornitoring thermal plume. Retrieval pattern for coastal sea surface temperature (SST) was built to monitor the thermal plume from nuclear power plant. The research area is located near Guangdong Daya Bay Nuclear Power Station (GNPS), where synchronized validations were also implemented. The National Centers for Environmental Prediction (NCEP) data was interpolated spatially and temporally. The interpolated data as well as surface weather conditions were subsequently employed into radiative transfer model for the atmospheric correction of IRS4 thermal image. A look-up-table (LUT) was built for the inversion between IRS4 channel radiance and radiometric temperature, and a fitted function was also built from the LUT data for the same purpose. The SST was finally retrieved based on those preprocessing procedures mentioned above. The bulk temperature (BT) of 84 samples distributed near GNPS was shipboard collected synchronically using salinity-temperature-deepness (CTD) instruments. The discrete sample data was surface interpolated and compared with the satellite retrieved SST. Results show that the average BT over the study area is 0.47 degrees C higher than the retrieved skin temperature (ST). For areas far away from outfall, the ST is higher than BT, with differences less than 1.0 degrees C. The main driving force for temperature variations in these regions is solar radiation. For areas near outfall, on the contrary, the retrieved ST is lower than BT, and greater differences between the two (meaning > 1.0 degrees C) happen when it gets closer to the outfall. Unlike the former case, the convective heat transfer resulting from the thermal plume is the primary reason leading to the temperature variations. Temperature rising (TR) distributions obtained from remote sensing data and in-situ measurements are consistent, except that the interpolated BT shows more level details (> 5 levels) than that of the ST (up to 4 levels). The areas with higher TR levels (> 2) are larger on BT maps, while for lower TR levels (≤ 2), the two methods perform with no obvious differences. Minimal errors for satellite-derived SST occur regularly around local time 10 a. m. This makes the remote sensing results to be substitutes for in-situ measurements. Therefore, for operational applications of HJ-1B IRS4, remote sensing technique can be a practical approach to monitoring the nuclear plant thermal pollution around this time period.

Microwat : a new Earth Explorer mission proposal to measure the Sea surface Temperature and the Sea Ice Concentration

NASA Astrophysics Data System (ADS)

Prigent, Catherine; Aires, Filipe; Heygster, Georg

2017-04-01

Ocean surface characterization from satellites is required to understand, monitor and predict the general circulation of the ocean and atmosphere. With more than 70% global cloud coverage at any time, visible and infrared satellite observations only provide limited information. The polar regions are particularly vulnerable to the climate changes and are home to complex mesoscale mechanisms that are still poorly understood. They are also under very persis- tent cloudiness. Passive microwave observations can provide surface information such as Sea Surface Temperature (SST) and Sea Ice Concentration (SIC) regardless of the cloud cover, but up to now they were limited in spatial resolution. Here, we propose a passive microwave conically scanning imager, MICROWAT, in a polar orbit, for the retrieval of the SST and SIC, with a spatial resolution of 15km. It observes at 6 and 10GHz, with low-noise dual polarization receivers, and a foldable mesh antenna of 5m-diameter. Furthermore, MICROWAT will fly in tandem with MetOp-SG B to benefit from the synergy with scatterometers (SCA) and microwave imagers (MWI). MICROWAT will provide global SST estimates, twice daily, regardless of cloud cover, with an accuracy of 0.3K and a spatial resolution of 15km. The SIC will be derived with an accuracy of 3%. With its unprecedented "all weather" accurate SST and SIC at 15km, MICROWAT will provide the atmospheric and oceanic forecasting sys- tems with products compatible with their increasing spatial resolution and complexity, with impact for societal applications. It will also answer fundamental science questions related to the ocean, the atmosphere and their interactions. * Prigent, Aires, Bernardo, Orlhac, Goutoule, Roquet, & Donlon, Analysis of the potential and limitations of microwave radiometry for the retrieval of sea surface temperature: Definition

DEVELOPMENT AND DEPLOYMENT OF THE MOBILE ARM RETRIEVAL SYSTEM (MARS) - 12187

DOE Office of Scientific and Technical Information (OSTI.GOV)

BURKE CA; LANDON MR; HANSON CE

Washington River Protection Solutions (WRPS) is developing and deploying Mobile Arm Retrieval System (MARS) technologies solutions to support retrieval of radioactive and chemical waste from underground single shell storage tanks (SST) located at the Hanford Site, which is near Richland, Washington. WRPS has developed the MARS using a standardized platform that is capable of deploying multiple retrieval technologies. To date, WRPS, working with their mentor-protege company, Columbia Energy and Environmental Services (CEES), has developed two retrieval mechanisms, MARS-Sluicing (MARS-S) and MARS-Vacuum (MARS-V). MARS-S uses pressurized fluids routed through spray nozzles to mobilize waste materials to a centrally located slurry pumpmore » (deployed in 2011). MARS-V uses pressurized fluids routed through an eductor nozzle. The eductor nozzle allows a vacuum to be drawn on the waste materials. The vacuum allows the waste materials to be moved to an in-tank vessel, then extracted from the SST and subsequently pumped to newer and safer double shell tanks (DST) for storage until the waste is treated for disposal. The MARS-S system is targeted for sound SSTs (i.e., non leaking tanks). The MARS-V is targeted for assumed leaking tanks or those tanks that are of questionable integrity. Both versions of MARS are beinglhave been developed in compliance with WRPS's TFC-PLN-90, Technology Development Management Plan [1]. TFC-PLN-90 includes a phased approach to design, testing, and ultimate deployment of new technologies. The MARS-V is scheduled to be deployed in tank 241-C-105 in late 2012.« less

Development and Deployment of the Mobile Arm Retrieval System (MARS) - 12187

DOE Office of Scientific and Technical Information (OSTI.GOV)

Burke, Christopher A.; Landon, Matthew R.; Hanson, Carl E.

Washington River Protection Solutions (WRPS) is developing and deploying Mobile Arm Retrieval System (MARS) technologies solutions to support retrieval of radioactive and chemical waste from underground single shell storage tanks (SST) located at the Hanford Site, which is near Richland, Washington. WRPS has developed the MARS using a standardized platform that is capable of deploying multiple retrieval technologies. To date, WRPS, working with their mentor-protege company, Columbia Energy and Environmental Services (CEES), has developed two retrieval mechanisms, MARS-Sluicing (MARS-S) and MARS-Vacuum (MARS-V). MARS-S uses pressurized fluids routed through spray nozzles to mobilize waste materials to a centrally located slurry pumpmore » (deployed in 2011). MARS-V uses pressurized fluids routed through an eductor nozzle. The eductor nozzle allows a vacuum to be drawn on the waste materials. The vacuum allows the waste materials to be moved to an in-tank vessel, then extracted from the SST and subsequently pumped to newer and safer double shell tanks (DST) for storage until the waste is treated for disposal. The MARS-S system is targeted for sound SSTs (i.e., non leaking tanks). The MARS-V is targeted for assumed leaking tanks or those tanks that are of questionable integrity. Both versions of MARS are being/have been developed in compliance with WRPS's TFC-PLN-90, Technology Development Management Plan [1]. TFC-PLN-90 includes a phased approach to design, testing, and ultimate deployment of new technologies. The MARS-V is scheduled to be deployed in tank 241-C-105 in late 2012. (authors)« less

DEVELOPMENT AND DEPLOYMENT OF THE MOBILE ARM RETRIEVAL SYSTEM (MARS) - 12187

DOE Office of Scientific and Technical Information (OSTI.GOV)

BURKE CA; LANDON MR; HANSON CE

Washington River Protection Solutions (WRPS) is developing and deploying Mobile Arm Retrieval System (MARS) technologies solutions to support retrieval of radioactive and chemical waste from underground single shell storage tanks (SST) located at the Hanford Site, which is near Richland, Washington. WRPS has developed the MARS using a standardized platform that is capable of deploying multiple retrieval technologies. To date, WRPS, working with their mentor-protege company, Columbia Energy and Environmental Services (CEES), has developed two retrieval mechanisms, MARS-Sluicing (MARS-S) and MARS-Vacuum (MARS-V). MARS-S uses pressurized fluids routed through spray nozzles to mobilize waste materials to a centrally located slurry pumpmore » (deployed in 2011). MARS-V uses pressurized fluids routed through an eductor nozzle. The eductor nozzle allows a vacuum to be drawn on the waste materials. The vacuum allows the waste materials to be moved to an in-tank vessel, then extracted from the SST and subsequently pumped to newer and safer double shell tanks (DST) for storage until the waste is treated for disposal. The MARS-S system is targeted for sound SSTs (i.e., non leaking tanks). The MARS-V is targeted for assumed leaking tanks or those tanks that are of questionable integrity. Both versions of MARS are being/have been developed in compliance with WRPS's TFC-PLN-90, Technology Development Management Plan. TFC-PLN-90 includes a phased approach to design, testing, and ultimate deployment of new technologies. The MARS-V is scheduled to be deployed in tank 241-C-105 in late 2012.« less

DOE Office of Scientific and Technical Information (OSTI.GOV)

KIRKBRIDE, R.A.

The Tank Waste Remediation System Operation and Utilization Plan updates the operating scenario and plans for the delivery of feed to BNFL Inc., retrieval of waste from single-shell tanks, and the overall process flowsheets for Phases I and II of the privatization of the Tank Waste Remediation System. The plans and flowsheets are updated with the most recent tank-by-tank inventory and sludge washing data. Sensitivity cases were run to evaluate the impact or benefits of proposed changes to the BNFL Inc. contract and to evaluate a risk-based SST retrieval strategy.

Tank Waste Retrieval Lessons Learned at the Hanford Site

DOE Office of Scientific and Technical Information (OSTI.GOV)

Dodd, R.A.

One of the environmental remediation challenges facing the nation is the retrieval and permanent disposal of approximately 90 million gallons of radioactive waste stored in underground tanks at the U. S. Department of Energy (DOE) facilities. The Hanford Site is located in southeastern Washington State and stores roughly 60 percent of this waste. An estimated 53 million gallons of high-level, transuranic, and low-level radioactive waste is stored underground in 149 single-shell tanks (SSTs) and 28 newer double-shell tanks (DSTs) at the Hanford Site. These SSTs range in size from 55,000 gallons to 1,000,000 gallon capacity. Approximately 30 million gallons ofmore » this waste is stored in SSTs. The SSTs were constructed between 1943 and 1964 and all have exceeded the nominal 20-year design life. Sixty-seven SSTs are known or suspected to have leaked an estimated 1,000,000 gallons of waste to the surrounding soil. The risk of additional SST leakage has been greatly reduced by removing more than 3 million gallons of interstitial liquids and supernatant and transferring this waste to the DST system. Retrieval of SST salt-cake and sludge waste is underway to further reduce risks and stage feed materials for the Hanford Site Waste Treatment Plant. Regulatory requirements for SST waste retrieval and tank farm closure are established in the Hanford Federal Facility Agreement and Consent Order (HFFACO), better known as the Tri- Party Agreement, or TPA. The HFFACO was signed by the DOE, the State of Washington Department of Ecology (Ecology), and U.S. Environmental Protection Agency (EPA) and requires retrieval of as much waste as technically possible, with waste residues not to exceed 360 ft{sup 3} in 530,000 gallon or larger tanks; 30 ft{sup 3} in 55,000 gallon or smaller tanks; or the limit of waste retrieval technology, whichever is less. If residual waste volume requirements cannot be achieved, then HFFACO Appendix H provisions can be invoked to request Ecology and EPA approval of an exception to the waste retrieval criteria for a specific tank. Tank waste retrieval has been conducted at the Hanford Site over the last few decades using a method referred to as Past Practice Hydraulic Sluicing. Past Practice Hydraulic Sluicing employs large volumes of DST supernatant and water to dislodge, dissolve, mobilize, and retrieve tank waste. Concern over the leak integrity of SSTs resulted in the need for tank waste retrieval methods capable of using smaller volumes of liquid in a more controlled manner. Retrieval of SST waste in accordance with HFFACO requirements was initiated at the Hanford Site in April 2003. New and innovative tank waste retrieval methods that minimize and control the use of liquids are being implemented for the first time. These tank waste retrieval methods replace Past Practice Hydraulic Sluicing and employ modified sluicing, vacuum retrieval, and in-tank vehicle techniques. Waste retrieval has been completed in seven Hanford Site SSTs (C-106, C-103, C-201, C-202, C-203, C-204, and S-112) in accordance with HFFACO requirements. Three additional tanks are currently in the process of being retrieved (C-108, C-109 and S-102) Preparation for retrieval of two additional SSTs (C-104 and C-110) is ongoing with retrieval operations forecasted to start in calendar year 2008. Tank C-106 was retrieved to a residual waste volume of 470 ft{sup 3} using oxalic acid dissolution and modified sluicing. An Appendix H exception request for Tank C-106 is undergoing review. Tank C-103 was retrieved to a residual volume of 351 ft{sup 3} using a modified sluicing technology. This approach was successful at reaching the TPA limits for this tank of less than 360 ft{sup 3}and the limits of the technology. Tanks C-201, C-202, C-203, and C-204 are smaller (55,000 gallon) tanks and waste removal was completed in accordance with HFFACO requirements using a vacuum retrieval system. Residual waste volumes in each of these four tanks were less than 25 ft{sup 3}. Tank S-112 retrieval was completed February 28, 2007, meeting the TPA Limits of less than 360 cu ft using salt-cake dissolution, modified sluicing, in-tank vehicle with high pressure water spray and caustic dissolution. Tanks C-108 and C-109 have been retrieved to 90% and 85% respectively. Modified sluicing was no longer effective at retrieving the remaining 5,000 to 10,000 gallons of residual. A Mobile Retrieval Tool (FoldTrac) is scheduled for installation early in 2008 to assist in breaking up chunks of waste and mobilizing the waste for transfer. Lessons learned from application of new tank waste retrieval methods are being documented and incorporated into future retrieval operations. They address all phases of retrieval including process design, equipment procurement and installation, supporting documentation, and system operations. Information is obtained through interviews with retrieval project personnel, focused workshops, review of problem evaluation requests, and evaluation of retrieval performance data. This paper presents current retrieval successes and lessons learned from retrieval of tank waste at the Hanford Site and discusses how this information is used to optimize retrieval system efficiency, improve overall cost effectiveness of retrieval operations, and ensure that HFFACO requirements are met. (authors)« less

Multi-scale Quantitative Precipitation Forecasting Using ...

EPA Pesticide Factsheets

Global sea surface temperature (SST) anomalies can affect terrestrial precipitation via ocean-atmosphere interaction known as climate teleconnection. Non-stationary and non-linear characteristics of the ocean-atmosphere system make the identification of the teleconnection signals difficult to be detected at a local scale as it could cause large uncertainties when using linear correlation analysis only. This paper explores the relationship between global SST and terrestrial precipitation with respect to long-term non-stationary teleconnection signals during 1981-2010 over three regions in North America and one in Central America. Empirical mode decomposition as well as wavelet analysis is utilized to extract the intrinsic trend and the dominant oscillation of the SST and precipitation time series in sequence. After finding possible associations between the dominant oscillation of seasonal precipitation and global SST through lagged correlation analysis, the statistically significant SST regions are extracted based on the correlation coefficient. With these characterized associations, individual contribution of these SST forcing regions linked to the related precipitation responses are further quantified through nonlinear modeling with the aid of extreme learning machine. Results indicate that the non-leading SST regions also contribute a salient portion to the terrestrial precipitation variability compared to some known leading SST regions. In some cases, these

Effects of different carbohydrate sources on fructan metabolism in plants of Chrysolaena obovata grown in vitro

PubMed Central

Trevisan, Flavio; Oliveira, Vanessa F.; Carvalho, Maria A. M.; Gaspar, Marília

2015-01-01

Chrysolaena obovata (Less.) Dematt., previously named Vernonia herbacea, is an Asteraceae native to the Cerrado which accumulates about 80% of the rhizophore dry mass as inulin-type fructans. Considering its high inulin production and the wide application of fructans, a protocol for C. obovata in vitro culture was recently established. Carbohydrates are essential for in vitro growth and development of plants and can also act as signaling molecules involved in cellular adjustments and metabolic regulation. This work aimed to evaluate the effect of different sources of carbohydrate on fructan metabolism in plants grown in vitro. For this purpose, C. obovata plants cultivated in vitro were submitted to carbon deprivation and transferred to MS medium supplemented with sucrose, glucose or fructose. Following, their fructan composition and activity and expression of genes encoding enzymes for fructan synthesis (1-SST and 1-FFT) and degradation (1-FEH) were evaluated. For qRT-PCR analysis partial cDNA sequences corresponding to two different C. obovata genes, 1-SST and 1-FFT, were isolated. As expected, C. obovata sequences showed highest sequence identity to other Asteraceae 1-SST and 1-FFT, than to Poaceae related proteins. A carbon deficit treatment stimulated the transcription of the gene 1-FEH and inhibited 1-SST and 1-FFT and carbohydrate supplementation promoted reversal of the expression profile of these genes. With the exception of 1-FFT, a positive correlation between enzyme activity and gene expression was observed. The overall results indicate that sucrose, fructose and glucose act similarly on fructan metabolism and that 1-FEH and 1-SST are transcriptionally regulated by sugar in this species. Cultivation of plants in increasing sucrose concentrations stimulated synthesis and inhibited fructan mobilization, and induced a distinct pattern of enzyme activity for 1-SST and 1-FFT, indicating the existence of a mechanism for differential regulation between them. PMID:26442003

Effects of different carbohydrate sources on fructan metabolism in plants of Chrysolaena obovata grown in vitro.

PubMed

Trevisan, Flavio; Oliveira, Vanessa F; Carvalho, Maria A M; Gaspar, Marília

2015-01-01

Chrysolaena obovata (Less.) Dematt., previously named Vernonia herbacea, is an Asteraceae native to the Cerrado which accumulates about 80% of the rhizophore dry mass as inulin-type fructans. Considering its high inulin production and the wide application of fructans, a protocol for C. obovata in vitro culture was recently established. Carbohydrates are essential for in vitro growth and development of plants and can also act as signaling molecules involved in cellular adjustments and metabolic regulation. This work aimed to evaluate the effect of different sources of carbohydrate on fructan metabolism in plants grown in vitro. For this purpose, C. obovata plants cultivated in vitro were submitted to carbon deprivation and transferred to MS medium supplemented with sucrose, glucose or fructose. Following, their fructan composition and activity and expression of genes encoding enzymes for fructan synthesis (1-SST and 1-FFT) and degradation (1-FEH) were evaluated. For qRT-PCR analysis partial cDNA sequences corresponding to two different C. obovata genes, 1-SST and 1-FFT, were isolated. As expected, C. obovata sequences showed highest sequence identity to other Asteraceae 1-SST and 1-FFT, than to Poaceae related proteins. A carbon deficit treatment stimulated the transcription of the gene 1-FEH and inhibited 1-SST and 1-FFT and carbohydrate supplementation promoted reversal of the expression profile of these genes. With the exception of 1-FFT, a positive correlation between enzyme activity and gene expression was observed. The overall results indicate that sucrose, fructose and glucose act similarly on fructan metabolism and that 1-FEH and 1-SST are transcriptionally regulated by sugar in this species. Cultivation of plants in increasing sucrose concentrations stimulated synthesis and inhibited fructan mobilization, and induced a distinct pattern of enzyme activity for 1-SST and 1-FFT, indicating the existence of a mechanism for differential regulation between them.

Ocean Data Quality Control

DTIC Science & Technology

2011-11-18

the aero- sol at the coincident time and location of the satellite SST retrievals. This informa- tion is available in the daytime for the anti-solar...are of the same form, such as probabilities or standard normal deviates. A quality control decision-making algorithm in use at the U.S. Navy oceano

The ASTRI/CTA mini-array software system

NASA Astrophysics Data System (ADS)

Tosti, Gino; Schwarz, Joseph; Antonelli, Lucio Angelo; Trifoglio, Massimo; Catalano, Osvaldo; Maccarone, Maria Concetta; Leto, Giuseppe; Gianotti, Fulvio; Canestrari, Rodolfo; Giro, Enrico; Fiorini, Mauro; La Palombara, Nicola; Pareschi, Giovanni; Stringhetti, Luca; Vercellone, Stefano; Conforti, Vito; Tanci, Claudio; Bruno, Pietro; Grillo, Alessandro; Testa, Vincenzo; di Paola, Andrea; Gallozzi, Stefano

2014-07-01

ASTRI (Astrofisica con Specchi a Tecnologia Replicante Italiana) is a Flagship Project financed by the Italian Ministry of Education, University and Research, and led by INAF, the Italian National Institute of Astrophysics. The main goals of the ASTRI project are the realization of an end-to-end prototype of a Small Size Telescope (SST) for the Cherenkov Telescope Array (CTA) in a dual- mirror configuration (SST-2M) and, subsequently, of a mini-array comprising seven SST-2M telescopes. The mini-array will be placed at the final CTA Southern Site, which will be part of the CTA seed array, around which the whole CTA observatory will be developed. The Mini-Array Software System (MASS) will provide a comprehensive set of tools to prepare an observing proposal, to perform the observations specified therein (monitoring and controlling all the hardware components of each telescope), to analyze the acquired data online and to store/retrieve all the data products to/from the archive. Here we present the main features of the MASS and its first version, to be tested on the ASTRI SST-2M prototype that will be installed at the INAF observing station located at Serra La Nave on Mount Etna in Sicily.

The Aqua-planet Experiment (APE): Response to Changed Meridional SST Profile

NASA Technical Reports Server (NTRS)

Williamson, David L.; Blackburn, Michael; Nakajima, Kensuke; Ohfuchi, Wataru; Takahashi, Yoshiyuki O.; Hayashi, Yoshi-Yuki; Nakamura, Hisashi; Ishiwatari, Masaki; Mcgregor, John L.; Borth, Hartmut;

Operational correction and validation of the VIIRS TEB longwave infrared band calibration bias during blackbody temperature changes

NASA Astrophysics Data System (ADS)

Wang, Wenhui; Cao, Changyong; Ignatov, Alex; Li, Zhenglong; Wang, Likun; Zhang, Bin; Blonski, Slawomir; Li, Jun

2017-09-01

The Suomi NPP VIIRS thermal emissive bands (TEB) have been performing very well since data became available on January 20, 2012. The longwave infrared bands at 11 and 12 um (M15 and M16) are primarily used for sea surface temperature (SST) retrievals. A long standing anomaly has been observed during the quarterly warm-up-cool-down (WUCD) events. During such event daytime SST product becomes anomalous with a warm bias shown as a spike in the SST time series on the order of 0.2 K. A previous study (CAO et al. 2017) suggested that the VIIRS TEB calibration anomaly during WUCD is due to a flawed theoretical assumption in the calibration equation and proposed an Ltrace method to address the issue. This paper complements that study and presents operational implementation and validation of the Ltrace method for M15 and M16. The Ltrace method applies bias correction during WUCD only. It requires a simple code change and one-time calibration parameter look-up-table update. The method was evaluated using colocated CrIS observations and the SST algorithm. Our results indicate that the method can effectively reduce WUCD calibration anomaly in M15, with residual bias of 0.02 K after the correction. It works less effectively for M16, with residual bias of 0.04 K. The Ltrace method may over-correct WUCD calibration biases, especially for M16. However, the residual WUCD biases are small in both bands. Evaluation results using the SST algorithm show that the method can effectively remove SST anomaly during WUCD events.

Improving the Accuracy of Satellite Sea Surface Temperature Measurements by Explicitly Accounting for the Bulk-Skin Temperature Difference

NASA Technical Reports Server (NTRS)

Wick, Gary A.; Emery, William J.; Castro, Sandra L.; Lindstrom, Eric (Technical Monitor)

2002-01-01

The focus of this research was to determine whether the accuracy of satellite measurements of sea surface temperature (SST) could be improved by explicitly accounting for the complex temperature gradients at the surface of the ocean associated with the cool skin and diurnal warm layers. To achieve this goal, work was performed in two different major areas. The first centered on the development and deployment of low-cost infrared radiometers to enable the direct validation of satellite measurements of skin temperature. The second involved a modeling and data analysis effort whereby modeled near-surface temperature profiles were integrated into the retrieval of bulk SST estimates from existing satellite data. Under the first work area, two different seagoing infrared radiometers were designed and fabricated and the first of these was deployed on research ships during two major experiments. Analyses of these data contributed significantly to the Ph.D. thesis of one graduate student and these results are currently being converted into a journal publication. The results of the second portion of work demonstrated that, with presently available models and heat flux estimates, accuracy improvements in SST retrievals associated with better physical treatment of the near-surface layer were partially balanced by uncertainties in the models and extra required input data. While no significant accuracy improvement was observed in this experiment, the results are very encouraging for future applications where improved models and coincident environmental data will be available. These results are included in a manuscript undergoing final review with the Journal of Atmospheric and Oceanic Technology.

Cloning and sequencing of a gene encoding a novel extracellular neutral proteinase from Streptomyces sp. strain C5 and expression of the gene in Streptomyces lividans 1326.

PubMed Central

Lampel, J S; Aphale, J S; Lampel, K A; Strohl, W R

1992-01-01

The gene encoding a novel milk protein-hydrolyzing proteinase was cloned on a 6.56-kb SstI fragment from Streptomyces sp. strain C5 genomic DNA into Streptomyces lividans 1326 by using the plasmid vector pIJ702. The gene encoding the small neutral proteinase (snpA) was located within a 2.6-kb BamHI-SstI restriction fragment that was partially sequenced. The molecular mass of the deduced amino acid sequence of the mature protein was determined to be 15,740, which corresponds very closely with the relative molecular mass of the purified protein (15,500) determined by sodium dodecyl sulfate-polyacrylamide gel electrophoresis. The N-terminal amino acid sequence of the purified neutral proteinase was determined, and the DNA encoding this sequence was found to be located within the sequenced DNA. The deduced amino acid sequence contains a conserved zinc binding site, although secondary ligand binding and active sites typical of thermolysinlike metalloproteinases are absent. The combination of its small size, deduced amino acid sequence, and substrate and inhibition profile indicate that snpA encodes a novel neutral proteinase. Images PMID:1569011

Sea Surface Temperature for Climate Applications: A New Dataset from the European Space Agency Climate Change Initiative

NASA Astrophysics Data System (ADS)

Merchant, C. J.; Hulley, G. C.

2013-12-01

There are many datasets describing the evolution of global sea surface temperature (SST) over recent decades -- so why make another one? Answer: to provide observations of SST that have particular qualities relevant to climate applications: independence, accuracy and stability. This has been done within the European Space Agency (ESA) Climate Change Initative (CCI) project on SST. Independence refers to the fact that the new SST CCI dataset is not derived from or tuned to in situ observations. This matters for climate because the in situ observing network used to assess marine climate change (1) was not designed to monitor small changes over decadal timescales, and (2) has evolved significantly in its technology and mix of types of observation, even during the past 40 years. The potential for significant artefacts in our picture of global ocean surface warming is clear. Only by having an independent record can we confirm (or refute) that the work done to remove biases/trend artefacts in in-situ datasets has been successful. Accuracy is the degree to which SSTs are unbiased. For climate applications, a common accuracy target is 0.1 K for all regions of the ocean. Stability is the degree to which the bias, if any, in a dataset is constant over time. Long-term instability introduces trend artefacts. To observe trends of the magnitude of 'global warming', SST datasets need to be stable to <5 mK/year. The SST CCI project has produced a satellite-based dataset that addresses these characteristics relevant to climate applications. Satellite radiances (brightness temperatures) have been harmonised exploiting periods of overlapping observations between sensors. Less well-characterised sensors have had their calibration tuned to that of better characterised sensors (at radiance level). Non-conventional retrieval methods (optimal estimation) have been employed to reduce regional biases to the 0.1 K level, a target violated in most satellite SST datasets. Models for quantifying uncertainty have been developed to attach uncertainty to SST across a range of space-time scales. The stability of the data has been validated.

Error Estimation of Pathfinder Version 5.3 SST Level 3C Using Three-way Error Analysis

NASA Astrophysics Data System (ADS)

Saha, K.; Dash, P.; Zhao, X.; Zhang, H. M.

2017-12-01

One of the essential climate variables for monitoring as well as detecting and attributing climate change, is Sea Surface Temperature (SST). A long-term record of global SSTs are available with observations obtained from ships in the early days to the more modern observation based on in-situ as well as space-based sensors (satellite/aircraft). There are inaccuracies associated with satellite derived SSTs which can be attributed to the errors associated with spacecraft navigation, sensor calibrations, sensor noise, retrieval algorithms, and leakages due to residual clouds. Thus it is important to estimate accurate errors in satellite derived SST products to have desired results in its applications.Generally for validation purposes satellite derived SST products are compared against the in-situ SSTs which have inaccuracies due to spatio/temporal inhomogeneity between in-situ and satellite measurements. A standard deviation in their difference fields usually have contributions from both satellite as well as the in-situ measurements. A real validation of any geophysical variable must require the knowledge of the "true" value of the said variable. Therefore a one-to-one comparison of satellite based SST with in-situ data does not truly provide us the real error in the satellite SST and there will be ambiguity due to errors in the in-situ measurements and their collocation differences. A Triple collocation (TC) or three-way error analysis using 3 mutually independent error-prone measurements, can be used to estimate root-mean square error (RMSE) associated with each of the measurements with high level of accuracy without treating any one system a perfectly-observed "truth". In this study we are estimating the absolute random errors associated with Pathfinder Version 5.3 Level-3C SST product Climate Data record. Along with the in-situ SST data, the third source of dataset used for this analysis is the AATSR reprocessing of climate (ARC) dataset for the corresponding period. All three SST observations are collocated, and statistics of difference between each pair is estimated. Instead of using a traditional TC analysis we have implemented the Extended Triple Collocation (ETC) approach to estimate the correlation coefficient of each measurement system w.r.t. the unknown target variable along with their RMSE.

Initial retrieval sequence and blending strategy

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pemwell, D.L.; Grenard, C.E.

1996-09-01

This report documents the initial retrieval sequence and the methodology used to select it. Waste retrieval, storage, pretreatment and vitrification were modeled for candidate single-shell tank retrieval sequences. Performance of the sequences was measured by a set of metrics (for example,high-level waste glass volume, relative risk and schedule).Computer models were used to evaluate estimated glass volumes,process rates, retrieval dates, and blending strategy effects.The models were based on estimates of component inventories and concentrations, sludge wash factors and timing, retrieval annex limitations, etc.

Detector-level spectral characterization of the Suomi National Polar-orbiting Partnership Visible Infrared Imaging Radiometer Suite long-wave infrared bands M15 and M16.

PubMed

Padula, Francis; Cao, Changyong

2015-06-01

The Suomi National Polar-orbiting Partnership (S-NPP) Visible Infrared Imaging Radiometer Suite (VIIRS) sensor data record (SDR) product achieved validated maturity status in March 2014 after roughly two years of on-orbit characterization (S-NPP spacecraft launched on 28 October 2011). During post-launch analysis the VIIRS Sea Surface Temperature (SST) Environmental Data Record (EDR) team observed an anomalous striping pattern in the daytime SST data. Daytime SST retrievals use the two VIIRS long-wave infrared bands: M15 (10.7 μm) and M16 (11.8 μm). To assess possible root causes due to detector-level spectral response function (SRF) effects, a study was conducted to compare the radiometric response of the detector-level and operational-band averaged SRFs of VIIRS bands M15 and M16. The study used simulated hyperspectral blackbody radiance data and clear-sky ocean hyperspectral radiances under different atmospheric conditions. It was concluded that the SST product is likely impacted by small differences in detector-level SRFs and that if users require optimal radiometric performance, detector-level processing is recommended for both SDR and EDR products. Future work should investigate potential SDR product improvements through detector-level processing in support of the generation of Suomi NPP VIIRS climate quality SDRs.

Conference on Satellite Meteorology and Oceanography, 6th, Atlanta, GA, Jan. 5-10, 1992, Preprints

DOE Office of Scientific and Technical Information (OSTI.GOV)

Not Available

The present volume on satellite meteorology and oceanography discusses cloud retrieval from collocated IR sounder data and imaging systems, satellite retrievals of marine stratiform cloud systems, multispectral analysis of satellite observations of smoke and dust, and image and graphical analysis of principal components of satellite sounding channels. Attention is given to an evaluation of results from classification retrieval methods, the use of TOVS radiances, estimation of path radiance on the basis of remotely sensed data, and a reexamination of SST as a predictor for tropical storm intensity. Topics addressed include optimal smoothing of GOES VAS for upper-atmosphere thermal waves, obtainingmore » cloud motion vectors from polar orbiting satellites, the use of cloud relative animation in the analysis of satellite data, and investigations of a polar low using geostationary satellite data.« less

Evaluation of Enhanced High Resolution MODIS/AMSR-E SSTs and the Impact on Regional Weather Forecast

NASA Technical Reports Server (NTRS)

Schiferl, Luke D.; Fuell, Kevin K.; Case, Jonathan L.; Jedlovec, Gary J.

2010-01-01

Over the last few years, the NASA Short-term Prediction Research and Transition (SPoRT) Center has been generating a 1-km sea surface temperature (SST) composite derived from retrievals of the Moderate Resolution Imaging Spectroradiometer (MODIS) for use in operational diagnostics and regional model initialization. With the assumption that the day-to-day variation in the SST is nominal, individual MODIS passes aboard the Earth Observing System (EOS) Aqua and Terra satellites are used to create and update four composite SST products each day at 0400, 0700, 1600, and 1900 UTC, valid over the western Atlantic and Caribbean waters. A six month study from February to August 2007 over the marine areas surrounding southern Florida was conducted to compare the use of the MODIS SST composite versus the Real-Time Global SST analysis to initialize the Weather Research and Forecasting (WRF) model. Substantial changes in the forecast heat fluxes were seen at times in the marine boundary layer, but relatively little overall improvement was measured in the sensible weather elements. The limited improvement in the WRF model forecasts could be attributed to the diurnal changes in SST seen in the MODIS SST composites but not accounted for by the model. Furthermore, cloud contamination caused extended periods when individual passes of MODIS were unable to update the SSTs, leading to substantial SST latency and a cool bias during the early summer months. In order to alleviate the latency problems, the SPoRT Center recently enhanced its MODIS SST composite by incorporating information from the Advanced Microwave Scanning Radiometer-EOS (AMSR-E) instruments as well as the Operational Sea Surface Temperature and Sea Ice Analysis. These enhancements substantially decreased the latency due to cloud cover and improved the bias and correlation of the composites at available marine point observations. While these enhancements improved upon the modeled cold bias using the original MODIS SSTs, the discernable impacts on the WRF model were still somewhat limited. This paper explores several factors that may have contributed to this result. First, the original methodology to initialize the model used the most recent SST composite available in a hypothetical real ]time configuration, often matching the forecast initial time with an SST field that was 5-8 hours offset. To minimize the differences that result from the diurnal variations in SST, the previous day fs SST composite is incorporated at a time closest to the model initialization hour (e.g. 1600 UTC composite at 1500 UTC model initialization). Second, the diurnal change seen in the MODIS SST composites was not represented by the WRF model in previous simulations, since the SSTs were held constant throughout the model integration. To address this issue, we explore the use of a water skin-temperature diurnal cycle prediction capability within v3.1 of the WRF model to better represent fluctuations in marine surface forcing. Finally, the verification of the WRF model is limited to very few over-water sites, many of which are located near the coastlines. In order to measure the open ocean improvements from the AMSR-E, we could use an independent 2-dimensional, satellite-derived data set to validate the forecast model by applying an object-based verification method. Such a validation technique could aid in better understanding the benefits of the mesoscale SST spatial structure to regional models applications.

Mechanisms Regulating Deep Moist Convection and Sea-Surface Temperatures of the Tropics

NASA Technical Reports Server (NTRS)

Sud, Y. C.; Walker, G. K.; Lau, K. M.

1998-01-01

Despite numerous previous studies, two relationships between deep convection and the sea-surface temperature (SST) of the tropics remain unclear. The first is the cause for the sudden emergence of deep convection at about 28 deg SST, and the second is its proximity to the highest observed SST of about 30 C. Our analysis provides a rational explanation for both by utilizing the Improved Meteorological (IMET) buoy data together with radar rainfall retrievals and atmospheric soundings provided by the Tropical Ocean Global Atmosphere Coupled Ocean-Atmosphere Response Experiment (TOGA-COARE). The explanation relies on the basic principles of moist convection as enunciated in the Arakawa-Schubert cumulus parameterization. Our analysis shows that an SST range of 28-29 C is necessary for "charging" the atmospheric boundary layer with sufficient moist static energy that can enable the towering convection to reach up to the 200 hPa level. In the IMET buoy data, the changes in surface energy fluxes associated with different rainfall amounts show that the deep convection not only reduces the solar flux into the ocean with a thick cloud cover, but it also generates downdrafts which bring significantly cooler and drier air into the boundary-layer thereby augmenting oceanic cooling by increased sensible and latent heat fluxes. In this way, the ocean seasaws between a net energy absorber for non-raining and a net energy supplier for deep-convective raining conditions. These processes produce a thermostat-like control of the SST. The data also shows that convection over the warm pool is modulated by dynamical influences of large-scale circulation embodying tropical easterly waves (with a 5-day period) and MJOs (with 40-day period); however, the quasi-permanent feature of the vertical profile of moist static energy, which is primarily maintained by the large-scale circulation and thermodynamical forcings, is vital for both the 28 C SST for deep convection and its upper limit at about 30 C.

Improved potential fishing zone forecast along East coast of India.

NASA Astrophysics Data System (ADS)

Srinivasa Rao, N.; Rao, M. V.; Chowdhary, S. B.; Rao, K. H.; Ramana, I. V.

Marine fisheries provide support to millions of fishermen community in terms of their living and livelihood Remote sensing technology proved to be useful for successful fishing in reducing time fuel and manpower because of its synoptic coverage Potential Fishing Zone PFZ forecast is being provided to the fishing industry in near-real time since 1992 using SST data derived from NOAA AVHRR thermal IR channel Retrieval of chlorophyll and its mapping has been done over Bay of Bengal from IRS-P4 OCM data Synergetic study of SST and chlorophyll has been established and implemented recently for an improved PFZ forecast The validation of these forecasts revealed 2-3 fold increases in fish catch along east coast of India This program provides socio-economic benefits to the fishermen living all along the Indian coast

SST algorithm based on radiative transfer model

NASA Astrophysics Data System (ADS)

Mat Jafri, Mohd Z.; Abdullah, Khiruddin; Bahari, Alui

2001-03-01

An algorithm for measuring sea surface temperature (SST) without recourse to the in-situ data for calibration has been proposed. The algorithm which is based on the recorded infrared signal by the satellite sensor is composed of three terms, namely, the surface emission, the up-welling radiance emitted by the atmosphere, and the down-welling atmospheric radiance reflected at the sea surface. This algorithm requires the transmittance values of thermal bands. The angular dependence of the transmittance function was modeled using the MODTRAN code. Radiosonde data were used with the MODTRAN code. The expression of transmittance as a function of zenith view angle was obtained for each channel through regression of the MODTRAN output. The Ocean Color Temperature Scanner (OCTS) data from the Advanced Earth Observation Satellite (ADEOS) were used in this study. The study area covers the seas of the North West of Peninsular Malaysia region. The in-situ data (ship collected SST values) were used for verification of the results. Cloud contaminated pixels were masked out using the standard procedures which have been applied to the Advanced Very High Resolution Radiometer (AVHRR) data. The cloud free pixels at the in-situ sites were extracted for analysis. The OCTS data were then substituted in the proposed algorithm. The appropriate transmittance value for each channel was then assigned in the calculation. Assessment for the accuracy was made by observing the correlation and the rms deviations between the computed and the ship collected values. The results were also compared with the results from OCTS multi- channel sea surface temperature algorithm. The comparison produced high correlation values. The performance of this algorithm is comparable with the established OCTS algorithm. The effect of emissivity on the retrieved SST values was also investigated. SST map was generated and contoured manually.

Deriving a sea surface temperature record suitable for climate change research from the along-track scanning radiometers

NASA Astrophysics Data System (ADS)

Merchant, C. J.; Llewellyn-Jones, D.; Saunders, R. W.; Rayner, N. A.; Kent, E. C.; Old, C. P.; Berry, D.; Birks, A. R.; Blackmore, T.; Corlett, G. K.; Embury, O.; Jay, V. L.; Kennedy, J.; Mutlow, C. T.; Nightingale, T. J.; O'Carroll, A. G.; Pritchard, M. J.; Remedios, J. J.; Tett, S.

We describe the approach to be adopted for a major new initiative to derive a homogeneous record of sea surface temperature for 1991 2007 from the observations of the series of three along-track scanning radiometers (ATSRs). This initiative is called (A)RC: (Advanced) ATSR Re-analysis for Climate. The main objectives are to reduce regional biases in retrieved sea surface temperature (SST) to less than 0.1 K for all global oceans, while creating a very homogenous record that is stable in time to within 0.05 K decade-1, with maximum independence of the record from existing analyses of SST used in climate change research. If these stringent targets are achieved, this record will enable significantly improved estimates of surface temperature trends and variability of sufficient quality to advance questions of climate change attribution, climate sensitivity and historical reconstruction of surface temperature changes. The approach includes development of new, consistent estimators for SST for each of the ATSRs, and detailed analysis of overlap periods. Novel aspects of the approach include generation of multiple versions of the record using alternative channel sets and cloud detection techniques, to assess for the first time the effect of such choices. There will be extensive effort in quality control, validation and analysis of the impact on climate SST data sets. Evidence for the plausibility of the 0.1 K target for systematic error is reviewed, as is the need for alternative cloud screening methods in this context.

A New 1DVAR Retrieval for AMSR2 and GMI: Validation and Sensitivites

NASA Astrophysics Data System (ADS)

Duncan, D.; Kummerow, C. D.

2015-12-01

A new non-raining retrieval has been developed for microwave imagers and applied to the GMI and AMSR2 sensors. With the Community Radiative Transfer Model (CRTM) as the forward model for the physical retrieval, a 1-dimensional variational method finds the atmospheric state which minimizes the difference between observed and simulated brightness temperatures. A key innovation of the algorithm development is a method to calculate the sensor error covariance matrix that is specific to the forward model employed and includes off-diagonal elements, allowing the algorithm to handle various forward models and sensors with little cross-talk. The water vapor profile is resolved by way of empirical orthogonal functions (EOFs) and then summed to get total precipitable water (TPW). Validation of retrieved 10m wind speed, TPW, and sea surface temperature (SST) is performed via comparison with buoys and radiosondes as well as global models and other remotely sensed products. In addition to the validation, sensitivity experiments investigate the impact of ancillary data on the under-constrained retrieval, a concern for climate data records that strive to be independent of model biases. The introduction of model analysis data is found to aid the algorithm most at high frequency channels and affect TPW retrievals, whereas wind and cloud water retrievals show little effect from ingesting further ancillary data.

Forgetting motor programmes: retrieval dynamics in procedural memory.

PubMed

Tempel, Tobias; Frings, Christian

2014-01-01

When motor sequences are stored in memory in a categorised manner, selective retrieval of some sequences can induce forgetting of the non-retrieved sequences. We show that such retrieval-induced forgetting (RIF) occurs not only in cued recall but also in a test assessing memory indirectly by providing novel test cues without involving recall of items. Participants learned several sequential finger movements (SFMs), each consisting of the movement of two fingers of either the left or the right hand. Subsequently, they performed retrieval practice on half of the sequences of one hand. A final task then required participants to enter letter dyads. A subset of these dyads corresponded to the previously learned sequences. RIF was present in the response times during the entering of the dyads. The finding of RIF in the slowed-down execution of motor programmes overlapping with initially trained motor sequences suggests that inhibition resolved interference between procedural representations of the acquired motor sequences of one hand during retrieval practice.

Ups and downs of space tourism development in 60 years from moon register to spaceshiptwo CRASH

NASA Astrophysics Data System (ADS)

Chang, Yi-Wei; Chern, Jeng-Shing

2016-10-01

In human imagination, dreams and expectations, the sequence of ;space tourism; has most likely been Moon tourism, Earth orbital tourism and then suborbital tourism. But the sequence in actual development is the reverse: first Earth suborbital tourism, then orbital tourism, and finally Moon tourism. In 1954, three years before the successful launch of the first human artificial satellite, the world's oldest travel company, Thomas Cook in Britain, initiated the ;Moon Register.; Enthusiasts could sign an option for a commercial trip to the Moon and the company guaranteed to provide tickets at the earliest possible date. Sixty years later on 31st October 2014, the first SpaceShip Two (SS2) of Virgin Galactic developed for commercial suborbital space tourism (SST) and scientific research crashed at the Mojave Desert in California during test flight. Although the first privately paid space tourist had traveled to the International Space Station in 2001, this was only for millionaires and not the general public. In 2004, although SpaceShipOne won the Ansari X prize and shed the first light on SST, the commercial SST operations originally planned to be realized in 2008 are now long overdue. The SS2 has been just one of the reusable suborbital launch vehicles developed for SST and other purposes, with others including the Lynx, Spaceplane and Dream Chaser. However a tragedy in which the SS2 crashed and caused the sacrifice of one senior test pilot alerted tourists that the long overdue of SST might still be a few years away. The purposes of this paper are to review and discuss the ups and downs of space tourism development in the 60 years from 1954 to 2014, and to look forward to get more clear future from the unveiling of second SS2 on 19th February 2016 and the continuous development of Lynx Mark I. However in any case, there are still many constraints including economy.

Regional to Global Assessments of Phytoplankton Dynamics From The SeaWiFS Mission

NASA Technical Reports Server (NTRS)

Siegel, David; Behrenfeld, Michael; Maritorena, Stephanie; McClain, Charles R.; Antoine, David; Bailey, Sean W.; Bontempi, Paula S.; Boss, Emmanuel S.; Dierssen, Heidi M.; Doney, Scott C.;

Deep Sludge Gas Release Event Analytical Evaluation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sams, Terry L.

2013-08-15

Long Abstract. Full Text. The purpose of the Deep Sludge Gas Release Event Analytical Evaluation (DSGRE-AE) is to evaluate the postulated hypothesis that a hydrogen GRE may occur in Hanford tanks containing waste sludges at levels greater than previously experienced. There is a need to understand gas retention and release hazards in sludge beds which are 200 -300 inches deep. These sludge beds are deeper than historical Hanford sludge waste beds, and are created when waste is retrieved from older single-shell tanks (SST) and transferred to newer double-shell tanks (DST).Retrieval of waste from SSTs reduces the risk to the environmentmore » from leakage or potential leakage of waste into the ground from these tanks. However, the possibility of an energetic event (flammable gas accident) in the retrieval receiver DST is worse than slow leakage. Lines of inquiry, therefore, are (1) can sludge waste be stored safely in deep beds; (2) can gas release events (GRE) be prevented by periodically degassing the sludge (e.g., mixer pump); or (3) does the retrieval strategy need to be altered to limit sludge bed height by retrieving into additional DSTs? The scope of this effort is to provide expert advice on whether or not to move forward with the generation of deep beds of sludge through retrieval of C-Farm tanks. Evaluation of possible mitigation methods (e.g., using mixer pumps to release gas, retrieving into an additional DST) are being evaluated by a second team and are not discussed in this report. While available data and engineering judgment indicate that increased gas retention (retained gas fraction) in DST sludge at depths resulting from the completion of SST 241-C Tank Farm retrievals is not expected and, even if gas releases were to occur, they would be small and local, a positive USQ was declared (Occurrence Report EM-RP--WRPS-TANKFARM-2012-0014, "Potential Exists for a Large Spontaneous Gas Release Event in Deep Settled Waste Sludge"). The purpose of this technical report is to (1) present and discuss current understandings of gas retention and release mechanisms for deep sludge in U.S. Department of Energy (DOE) complex waste storage tanks; and (2) to identify viable methods/criteria for demonstrating safety relative to deep sludge gas release events (DSGRE) in the near term to support the Hanford C-Farm retrieval mission. A secondary purpose is to identify viable methods/criteria for demonstrating safety relative to DSGREs in the longer term to support the mission to retrieve waste from the Hanford Tank Farms and deliver it to the Waste Treatment and Immobilization Plant (WTP). The potential DSGRE issue resulted in the declaration of a positive Unreviewed Safety Question (USQ). C-Farm retrievals are currently proceeding under a Justification for Continued Operation (JCO) that only allows tanks 241-AN-101 and 241-AN-106 sludge levels of 192 inches and 195 inches, respectively. C-Farm retrievals need deeper sludge levels (approximately 310 inches in 241-AN-101 and approximately 250 inches in 241-AN-106). This effort is to provide analytical data and justification to continue retrievals in a safe and efficient manner.« less

An Integrated Retrieval Framework for AMSR2: Implications for Light Precipitation and Sea Ice Edge Detectability

NASA Astrophysics Data System (ADS)

Duncan, D.; Kummerow, C. D.; Meier, W.

2016-12-01

Over the lifetime of AMSR-E, operational retrieval algorithms were developed and run for precipitation, ocean suite (SST, wind speed, cloud liquid water path, and column water vapor over ocean), sea ice, snow water equivalent, and soil moisture. With a separate algorithm for each group, the retrievals were never interactive or integrated in any way despite many co-sensitivities. AMSR2, the follow-on mission to AMSR-E, retrieves the same parameters at a slightly higher spatial resolution. We have combined the operational algorithms for AMSR2 in a way that facilitates sharing information between the retrievals. Difficulties that arose were mainly related to calibration, spatial resolution, coastlines, and order of processing. The integration of all algorithms for AMSR2 has numerous benefits, including better detection of light precipitation and sea ice, fewer screened out pixels, and better quality flags. Integrating the algorithms opens up avenues for investigating the limits of detectability for precipitation from a passive microwave radiometer and the impact of spatial resolution on sea ice edge detection; these are investigated using CloudSat and MODIS coincident observations from the A-Train constellation.

Polymorphic human somatostatin gene is located on chromosome 3.

PubMed Central

Naylor, S L; Sakaguchi, A Y; Shen, L P; Bell, G I; Rutter, W J; Shows, T B

1983-01-01

Somatostatin is a 14-amino-acid neuropeptide and hormone that inhibits the secretion of several peptide hormones. The human gene for somatostatin SST has been cloned, and the sequence has been determined. This clone was used as a probe in chromosome mapping studies to detect the human somatostatin sequence in human-rodent hybrids. Southern blot analysis of 41 hybrids, including some containing translocations of human chromosomes, placed SST in the q21 leads to qter region of chromosome 3. Human DNAs from unrelated individuals were screened for restriction fragment polymorphisms detectable by the somatostatin gene probe. Two polymorphisms were found: (i) an EcoRI variant located at the 3' end of the gene, found in Caucasian, U.S. Black, and Asian populations with a frequency of approximately 0.10 and (ii) a BamHI variant in the intron, which occurs in Caucasians at a frequency of 0.13. Images PMID:6133281

Evaluation of NASA GEOS-ADAS Modeled Diurnal Warming Through Comparisons to SEVIRI and AMSR2 SST Observations

NASA Astrophysics Data System (ADS)

Gentemann, C. L.; Akella, S.

2018-02-01

An analysis of the ocean skin Sea Surface Temperature (SST) has been included in the Goddard Earth Observing System (GEOS) - Atmospheric Data Assimilation System (ADAS), Version 5 (GEOS-ADAS). This analysis is based on the GEOS atmospheric general circulation model (AGCM) that simulates near-surface diurnal warming and cool skin effects. Analysis for the skin SST is performed along with the atmospheric state, including Advanced Very High Resolution Radiometer (AVHRR) satellite radiance observations as part of the data assimilation system. One month (September, 2015) of GEOS-ADAS SSTs were compared to collocated satellite Spinning Enhanced Visible and InfraRed Imager (SEVIRI) and Advanced Microwave Scanning Radiometer 2 (AMSR2) SSTs to examine how the GEOS-ADAS diurnal warming compares to the satellite measured warming. The spatial distribution of warming compares well to the satellite observed distributions. Specific diurnal events are analyzed to examine variability within a single day. The dependence of diurnal warming on wind speed, time of day, and daily average insolation is also examined. Overall the magnitude of GEOS-ADAS warming is similar to the warming inferred from satellite retrievals, but several weaknesses in the GEOS-AGCM simulated diurnal warming are identified and directly related back to specific features in the formulation of the diurnal warming model.

Biosynthesis and processing of the somatostatin family of peptide hormones.

PubMed

Andrews, P C; Dixon, J E

1986-01-01

Understanding of the biosynthesis of the somatostatin family of peptide hormones has greatly increased in recent years. Isolation and sequencing of the rat somatostatin gene indicates that it contains a single intron located between the codons for Gn(-57) and Glu(-56) of pre-prosomatostatin. The gene contains three repetitive sequences, one at the 5' end of the gene and two of them 3' to the coding portion. Two of the sequences consist of alternating purine-pyrimidine bases and have been shown to adopt Z-DNA structures in vitro. The cDNA for rat somatostatin codes for a 116-residue peptide structurally similar to the anglerfish and catfish precursors to the 14-residue somatostatin (SST-14). In addition to SST-14, the catfish and the anglerfish both contain an additional pancreatic somatostatin, each derived from a different gene. The catfish contains a 22-residue somatostatin, which is O-glycosylated at Thr-5. The second somatostatin gene from anglerfish encodes a prosomatostatin that is processed to a 28-residue peptide. The mature peptide contains a hydroxylated lysine at position 23.

Stratigraphic framework for Pliocene paleoclimate reconstruction: The correlation conundrum

USGS Publications Warehouse

Dowsett, H.J.; Robinson, M.M.

2006-01-01

Pre-Holocene paleoclimate reconstructions face a correlation conundrum because complications inherent in the stratigraphic record impede the development of synchronous reconstruction. The Pliocene Research, Interpretation and Synoptic Mapping (PRISM) paleoenvironmental reconstructions have carefully balanced temporal resolution and paleoclimate proxy data to achieve a useful and reliable product and are the most comprehensive pre-Pleistocene data sets available for analysis of warmer-than-present climate and for climate modeling experiments. This paper documents the stratigraphic framework for the mid-Pliocene sea surface temperature (SST) reconstruction of the North Atlantic and explores the relationship between stratigraphic/temporal resolution and various paleoceanographic estimates of SST. The magnetobiostratigraphic framework for the PRISM North Atlantic region is constructed from planktic foraminifer, calcareous nannofossil and paleomagnetic reversal events recorded in deep-sea cores and calibrated to age. Planktic foraminifer census data from multiple samples within the mid-Pliocene yield multiple SST estimates for each site. Extracting a single SST value at each site from multiple estimates, given the limitations of the material and stratigraphic resolution, is problematic but necessary for climate model experiments. The PRISM reconstruction, unprecedented in its integration of many different types of data at a focused stratigraphic interval, utilizes a time slab approach and is based on warm peak average temperatures. A greater understanding of the dynamics of the climate system and significant advances in models now mandate more precise, globally distributed yet temporally synchronous SST estimates than are available through averaging techniques. Regardless of the precision used to correlate between sequences within the midd-Pliocene, a truly synoptic reconstruction in the temporal sense is unlikely. SST estimates from multiple proxies promise to further refine paleoclimate reconstructions but must consider the complications associated with each method, what each proxy actually records, and how these different proxies compare in time-averaged samples.

Methodology for interpretation of SST retrievals using the AVHRR split window algorithm

NASA Technical Reports Server (NTRS)

Barbieri, R. W.; Mcclain, C. R.; Endres, D. L.

1983-01-01

Intercomparisons of sea surface temperature (SST) products derived from the operational NOAA-7 AVHRR-II algorithm and in situ observations are made. The 1982 data sets consist of ship survey data during the winter from the Mid-Atlantic Bight (MAB), ship and buoy measurements during April and September in the Gulf of Mexico and shipboard observations during April off the N.W. Spanish coast. The analyses included single pixel comparisons and the warmest pixel technique for 2 x 2 pixel and 10 x 10 pixel areas. The reason for using multi-pixel areas was for avoiding cloud contaminated pixels in the vicinity of the field measurements. Care must be taken when applying the warmest pixel technique near oceanic fronts. The Gulf of Mexico results clearly indicate a persistent degradation in algorithm accuracy due to El Chichon aerosols. The MAB and Spanish data sets indicate that very accurate estimates can be achieved if care is taken to avoid clouds and oceanic fronts.

A Multi-Channel Method for Retrieving Surface Temperature for High-Emissivity Surfaces from Hyperspectral Thermal Infrared Images

PubMed Central

Zhong, Xinke; Labed, Jelila; Zhou, Guoqing; Shao, Kun; Li, Zhao-Liang

2015-01-01

The surface temperature (ST) of high-emissivity surfaces is an important parameter in climate systems. The empirical methods for retrieving ST for high-emissivity surfaces from hyperspectral thermal infrared (HypTIR) images require spectrally continuous channel data. This paper aims to develop a multi-channel method for retrieving ST for high-emissivity surfaces from space-borne HypTIR data. With an assumption of land surface emissivity (LSE) of 1, ST is proposed as a function of 10 brightness temperatures measured at the top of atmosphere by a radiometer having a spectral interval of 800–1200 cm−1 and a spectral sampling frequency of 0.25 cm−1. We have analyzed the sensitivity of the proposed method to spectral sampling frequency and instrumental noise, and evaluated the proposed method using satellite data. The results indicated that the parameters in the developed function are dependent on the spectral sampling frequency and that ST of high-emissivity surfaces can be accurately retrieved by the proposed method if appropriate values are used for each spectral sampling frequency. The results also showed that the accuracy of the retrieved ST is of the order of magnitude of the instrumental noise and that the root mean square error (RMSE) of the ST retrieved from satellite data is 0.43 K in comparison with the AVHRR SST product. PMID:26061199

The Impact of the Atlantic Cold Tongue on West African Monsoon Onset in Regional Model Simulations for 1998-2002

NASA Technical Reports Server (NTRS)

Druyan, Leonard M.; Fulakeza, Matthew B.

2014-01-01

The Atlantic cold tongue (ACT) develops during spring and early summer near the Equator in the Eastern Atlantic Ocean and Gulf of Guinea. The hypothesis that the ACT accelerates the timing of West African monsoon (WAM) onset is tested by comparing two regional climate model (RM3) simulation ensembles. Observed sea surface temperatures (SST) that include the ACT are used to force a control ensemble. An idealized, warm SST perturbation is designed to represent lower boundary forcing without the ACT for the experiment ensemble. Summer simulations forced by observed SST and reanalysis boundary conditions for each of five consecutive years are compared to five parallel runs forced by SST with the warm perturbation. The article summarizes the sequence of events leading to the onset of the WAM in the Sahel region. The representation of WAM onset in RM3 simulations is examined and compared to Tropical Rainfall Measuring Mission (TRMM), Global Precipitation Climatology Project (GPCP) and reanalysis data. The study evaluates the sensitivity of WAM onset indicators to the presence of the ACT by analysing the differences between the two simulation ensembles. Results show that the timing of major rainfall events and therefore theWAM onset in the Sahel are not sensitive to the presence of the ACT. However, the warm SST perturbation does increase downstream rainfall rates over West Africa as a consequence of enhanced specific humidity and enhanced northward moisture flux in the lower troposphere.

Caspase-8-mediated intracellular acidification precedes mitochondrial dysfunction in somatostatin-induced apoptosis.

PubMed

Liu, D; Martino, G; Thangaraju, M; Sharma, M; Halwani, F; Shen, S H; Patel, Y C; Srikant, C B

2000-03-31

Activation of initiator and effector caspases, mitochondrial changes involving a reduction in its membrane potential and release of cytochrome c (cyt c) into the cytosol, are characteristic features of apoptosis. These changes are associated with cell acidification in some models of apoptosis. The hierarchical relationship between these events has, however, not been deciphered. We have shown that somatostatin (SST), acting via the Src homology 2 bearing tyrosine phosphatase SHP-1, exerts cytotoxic action in MCF-7 cells, and triggers cell acidification and apoptosis. We investigated the temporal sequence of apoptotic events linking caspase activation, acidification, and mitochondrial dysfunction in this system and report here that (i) SHP-1-mediated caspase-8 activation is required for SST-induced decrease in pH(i). (ii) Effector caspases are induced only when there is concomitant acidification. (iii) Decrease in pH(i) is necessary to induce reduction in mitochondrial membrane potential, cyt c release and caspase-9 activation and (iv) depletion of ATP ablates SST-induced cyt c release and caspase-9 activation, but not its ability to induce effector caspases and apoptosis. These data reveal that SHP-1-/caspase-8-mediated acidification occurs at a site other than the mitochondrion and that SST-induced apoptosis is not dependent on disruption of mitochondrial function and caspase-9 activation.

Seasonal to Decadal-Scale Variability in Satellite Ocean Color and Sea Surface Temperature for the California Current System

NASA Technical Reports Server (NTRS)

Mitchell, B. Greg; Kahru, Mati; Marra, John (Technical Monitor)

2002-01-01

Support for this project was used to develop satellite ocean color and temperature indices (SOCTI) for the California Current System (CCS) using the historic record of CZCS West Coast Time Series (WCTS), OCTS, WiFS and AVHRR SST. The ocean color satellite data have been evaluated in relation to CalCOFI data sets for chlorophyll (CZCS) and ocean spectral reflectance and chlorophyll OCTS and SeaWiFS. New algorithms for the three missions have been implemented based on in-water algorithm data sets, or in the case of CZCS, by comparing retrieved pigments with ship-based observations. New algorithms for absorption coefficients, diffuse attenuation coefficients and primary production have also been evaluated. Satellite retrievals are being evaluated based on our large data set of pigments and optics from CalCOFI.

Satellite Sea-surface Salinity Retrieval Dependencies

NASA Astrophysics Data System (ADS)

Bayler, E. J.; Ren, L.

2016-02-01

Comparing satellite sea-surface salinity (SSS) measurements and in situ observations reveals large-scale differences. What causes these differences? In this study, five boxes, sampling various oceanic regimes of the global ocean, provide insights on the relative performance of satellite SSS retrievals with respect to the influences of SST, precipitation and wind speed. The regions sampled are: the Inter-tropical Convergence Zone (ITCZ), the South Pacific Convergence Zone (SPCZ), NASA's Salinity Processes of the Upper-ocean Regional Study (SPURS) area, the North Pacific subarctic region, and the southern Indian Ocean. This study examines satellite SSS data from NASA's Aquarius Mission and ESA's Soil Moisture - Ocean Salinity (SMOS) mission, specifically: Aquarius official Aquarius Data Processing System (ADPS) Level-2 data, experimental Aquarius Combined Active-Passive (CAP) Level-2 SSS data developed by NASA's Jet Propulsion Laboratory (JPL), and SMOS Level-2 data.

The effect of episodic retrieval on inhibition in task switching.

PubMed

Grange, James A; Kowalczyk, Agnieszka W; O'Loughlin, Rory

2017-08-01

Inhibition in task switching is inferred from n-2 repetition costs: the observation that ABA task switching sequences are responded to slower than CBA sequences. This is thought to reflect the persisting inhibition of Task A, which slows reactivation attempts. Mayr (2002) reported an experiment testing a critical noninhibitory account of this effect, namely episodic retrieval: If the trial parameters for Task A match across an ABA sequence, responses should be facilitated because of priming from episodic retrieval; a cost would occur if trial parameters mismatch. In a rule-switching paradigm, Mayr reported no significant difference in n-2 repetition cost when the trial parameters repeated or switched across an ABA sequence, in clear contrast to the episodic retrieval account. What remains unclear is whether successful episodic retrieval modulates the n-2 repetition cost. Across 3 experiments-including a close replication of Mayr-we find clear evidence of reduced n-2 task repetition costs when episodic retrieval is controlled. We find that the effect of episodic retrieval on the n-2 task repetition cost is increased when the cue-task relationship is made more abstract, suggesting the effect is because of interference in establishing the relevant attentional set. We also demonstrate that the episodic retrieval effect is not influenced by retrieval of low-level, perceptual, elements. Together, the data suggest the n-2 task repetition cost-typically attributable to an inhibitory mechanism-also reflects episodic retrieval effects. (PsycINFO Database Record (c) 2017 APA, all rights reserved).

Coral Geochemical Proxy Records Of The East Asian Winter Monsoon And Hydrological Conditions In The Central Vietnam From 1978-2004 AD

NASA Astrophysics Data System (ADS)

Chang, C.; Shen, C.; Chen, Y.; Chiang, H.; Lam, D. D.; Ngai, N.

2007-12-01

Monthly-resolution geochemical proxies, including δ18O, δ13C, Sr/Ca, and Ba/Ca, in a living Porites coral head, collected from Son Tra Island, a near-shore island located at the north tip of Vung Da Nang Bay, central Vietnam (16°12'59.4", 108°1'57.1"), was used to quantitatively reconstruct records of sea surface temperature (SST), sea surface salinity (SSS), seasonality of rainfall, and regional terrestrial input during a period of 1978-2004 AD. By comparing the 1/4-century geochemical data, five features are exhibited. (1) The coral Sr/Ca-inferred summer SSTs correspond well with the 1°x1° instrumental data to suggest that the regional SST record can be retrieved from this local coral head. (2) Interannual variation of coral winter SST data does not follow regional instrumental values. The harmonic phenomenon between coral inferred winter SST dynamic and the surface pressure difference, between the southern South China Sea (SCS) (0-10°N, 105-115°E) and the northern SCS (22.5-32.5°N, 112-122°E), indicating that the cold local SST induced by East Asian winter monsoon was addressed in the Son Tra coral. (3) 1‰ seasonal anomaly of δ18O residual (Δδ18O) suggests a 2-4-psu seasonal salinity change between dry and wet seasons. (4) The synchronous intra-annual changes of δ18O and Ba/Ca data suggest that the rainy season is from late summer to winter, which is consistent with the meteorological record. (5) The high Ba/Ca background level of 10 μmol/mol in 1992-2004, 2-3 times larger than the averaged value of 4 μmol/mol in 1978-1992, indicates an enhanced terrestrial sediment discharge into the bay over the past 10 years. Ba records probably reflect an impact of human activity on hydrological change since the Vietnam War.

Towards Calibration of Sentinel 3 Data: Validation of Satellite-Derived SST Against In Situ Coastal Observations of the Portuguese Marine Waters

NASA Astrophysics Data System (ADS)

Vicente, Ricardo; Esteves, Rita; Lamas, Luisa; Pinto, Jose Paulo; Almeida, Sara; de Azevedo, Eduardo; Correia, Cecilia; Reis, Francisco

2016-08-01

Validation of future Sentinel-3 SLSTR data in the Eastern Atlantic Ocean was analysed here through a comparison of satellite-derived STT against in situ mooring buoys observations.SSTskin retrieved from IR satellite radiometers on- board ERS 1-2, Envisat, and Aqua, and concurrent SSTbulk measured with 14 buoy thermistors located at 1m depth were used to assess the statistical relationships between these datasets, with 20038 match- ups spanning from 1996 to 2015.As expected, results showed consistency between SSTskin and SSTbulk, exhibiting a correlation coefficient on the order of 98 %. Biases of both (A)ATSR and MODIS for day-time suggest a warmer satellite skin retrieval of + 0.15o and + 0.06o, respectively. For the night-time dataset, biases of - 0.25o and - 0.17o for (A)A TSR and MODIS, respectively, indicate cooler skin retrievals and reveal an inversion of the upper ocean thermic gradient. The RMSE ´s found were 0.53o for (A)ATSR and 0.41o for MODIS datasets.

Seasonality in the Western Mediterranean During the Last Glacial From Paired Oxygen Isotopes and Mg/Ca in Limpet Shells

NASA Astrophysics Data System (ADS)

Ferguson, J. E.; Henderson, G. M.; Fa, D.; Finlayson, C.

2008-12-01

Molluscs have shown great potential to act as seasonal-resolution archives of sea-surface temperatures (SST) at mid to high latitudes, outside the range of tropical surface corals. Seasonal resolution climate records from higher latitudes are important to allow investigation of the role of seasonality in controlling mean climate on diverse timescales, and of the evolution of climate systems such as the North Atlantic Oscillation. Long sequences of intertidal mollusc shells are difficult to find due to sea level fluctuations over glacial- interglacial periods. This study makes use of Patella shells collected by Neanderthals and humans and transported inland to caves on Gibraltar over at least the last 120 kyrs. Some 30 fossil Patella shells were selected from several hundred excavated from Gorham's and Vanguard Caves at Gibraltar. Oxygen isotope analysis of micromilled samples of modern Patella shells from the Gibraltar coastline demonstrate that the shells accurately record absolute SSTs and capture more than 80% of the full seasonal range. Analysis of fossil Patella shells, dated using 14C, provides records of the change in absolute SST and seasonality during the last glacial. Paired Mg/Ca ratios of micromilled samples in modern Patella shells follow a consistent positive relationship with SST providing an independent paleothermometer, analogous with coral Sr/Ca. Applying this Mg/Ca-SST relationship to fossil Patella shells allows the independent reconstruction of the absolute values and range of SSTs and the reconstruction of seawater δ18O for the western Mediterranean. Results show a cooling of glacial summer SSTs from 36 kyr BP to the LGM with maximum cooling of glacial summer SSTs of 7.5 °C relative to modern. In contrast, winter SSTs show greater variability on millennial timescales with a maximum cooling of up to 10 °C. SST seasonality is therefore extended due to greater winter cooling but SST seasonality is highly variable as a result of large fluctuation in the extent of winter cooling. These results contrast with GCM model estimates of SST values and seasonality during the glacial.

Evolving discriminators for querying video sequences

NASA Astrophysics Data System (ADS)

Iyengar, Giridharan; Lippman, Andrew B.

1997-01-01

In this paper we present a framework for content based query and retrieval of information from large video databases. This framework enables content based retrieval of video sequences by characterizing the sequences using motion, texture and colorimetry cues. This characterization is biologically inspired and results in a compact parameter space where every segment of video is represented by an 8 dimensional vector. Searching and retrieval is done in real- time with accuracy in this parameter space. Using this characterization, we then evolve a set of discriminators using Genetic Programming Experiments indicate that these discriminators are capable of analyzing and characterizing video. The VideoBook is able to search and retrieve video sequences with 92% accuracy in real-time. Experiments thus demonstrate that the characterization is capable of extracting higher level structure from raw pixel values.

Heteroassociative storage of hippocampal pattern sequences in the CA3 subregion

PubMed Central

Recio, Renan S.; Reyes, Marcelo B.

2018-01-01

Background Recent research suggests that the CA3 subregion of the hippocampus has properties of both autoassociative network, due to its ability to complete partial cues, tolerate noise, and store associations between memories, and heteroassociative one, due to its ability to store and retrieve sequences of patterns. Although there are several computational models of the CA3 as an autoassociative network, more detailed evaluations of its heteroassociative properties are missing. Methods We developed a model of the CA3 subregion containing 10,000 integrate-and-fire neurons with both recurrent excitatory and inhibitory connections, and which exhibits coupled oscillations in the gamma and theta ranges. We stored thousands of pattern sequences using a heteroassociative learning rule with competitive synaptic scaling. Results We showed that a purely heteroassociative network model can (i) retrieve pattern sequences from partial cues with external noise and incomplete connectivity, (ii) achieve homeostasis regarding the number of connections per neuron when many patterns are stored when using synaptic scaling, (iii) continuously update the set of retrievable patterns, guaranteeing that the last stored patterns can be retrieved and older ones can be forgotten. Discussion Heteroassociative networks with synaptic scaling rules seem sufficient to achieve many desirable features regarding connectivity homeostasis, pattern sequence retrieval, noise tolerance and updating of the set of retrievable patterns. PMID:29312826

ORFer--retrieval of protein sequences and open reading frames from GenBank and storage into relational databases or text files.

PubMed

Büssow, Konrad; Hoffmann, Steve; Sievert, Volker

2002-12-19

Functional genomics involves the parallel experimentation with large sets of proteins. This requires management of large sets of open reading frames as a prerequisite of the cloning and recombinant expression of these proteins. A Java program was developed for retrieval of protein and nucleic acid sequences and annotations from NCBI GenBank, using the XML sequence format. Annotations retrieved by ORFer include sequence name, organism and also the completeness of the sequence. The program has a graphical user interface, although it can be used in a non-interactive mode. For protein sequences, the program also extracts the open reading frame sequence, if available, and checks its correct translation. ORFer accepts user input in the form of single or lists of GenBank GI identifiers or accession numbers. It can be used to extract complete sets of open reading frames and protein sequences from any kind of GenBank sequence entry, including complete genomes or chromosomes. Sequences are either stored with their features in a relational database or can be exported as text files in Fasta or tabulator delimited format. The ORFer program is freely available at http://www.proteinstrukturfabrik.de/orfer. The ORFer program allows for fast retrieval of DNA sequences, protein sequences and their open reading frames and sequence annotations from GenBank. Furthermore, storage of sequences and features in a relational database is supported. Such a database can supplement a laboratory information system (LIMS) with appropriate sequence information.

Development and Deployment of the Extended Reach Sluicing System (ERSS) for Retrieval of Hanford Single Shell Tank Waste. Draft

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bauer, Roger E.; Figley, Reed R.; Innes, A. G.

2013-11-11

A history of the evolution and the design development of Extended Reach Sluicer System (ERSS) is presented. Several challenges are described that had to be overcome to create a machine that went beyond the capabilities of prior generation sluicers to mobilize waste in Single Shell Tanks for pumping into Double Shell Tank receiver tanks. Off-the-shelf technology and traditional hydraulic fluid power systems were combined with the custom-engineered components to create the additional functionality of the ERSS, while still enabling it to fit within very tight entry envelope into the SST. Problems and challenges inevitably were encountered and overcome in waysmore » that enhance the state of the art of fluid power applications in such constrained environments. Future enhancements to the ERSS design are explored for retrieval of tanks with different dimensions and internal obstacles.« less

Characterization and distribution of GHRH, PACAP, TRH, SST and IGF1 mRNAs in the green iguana.

PubMed

Ávila-Mendoza, José; Pérez-Rueda, Ernesto; Urban-Sosa, Valeria; Carranza, Martha; Martínez-Moreno, Carlos G; Luna, Maricela; Arámburo, Carlos

2018-01-01

The somatotropic axis (SA) regulates numerous aspects of vertebrate physiology such as development, growth, and metabolism and has influence on several tissues including neural, immune, reproductive and gastric tract. Growth hormone (GH) is a key component of SA, it is synthesized and released mainly by pituitary somatotrophs, although now it is known that virtually all tissues can express GH, which, in addition to its well-described endocrine roles, also has autocrine/paracrine/intracrine actions. In the pituitary, GH expression is regulated by several hypothalamic neuropeptides including GHRH, PACAP, TRH and SST. GH, in turn, regulates IGF1 synthesis in several target tissues, adding complexity to the system since GH effects can be exerted either directly or mediated by IGF1. In reptiles, little is known about the SA components and their functional interactions. The aim of this work was to characterize the mRNAs of the principal SA components in the green iguana and to develop the tools that allow the study of the structural and functional evolution of this system in reptiles. By employing RT-PCR and RACE, the cDNAs encoding for GHRH, PACAP, TRH, SST and IGF1 were amplified and sequenced. Results showed that these cDNAs coded for the corresponding protein precursors of 154, 170, 243, 113, and 131 amino acids, respectively. Of these, GHRH, PACAP, SST and IGF1 precursors exhibited a high structural conservation with respect to its counterparts in other vertebrates. On the other hand, iguana's TRH precursor showed 7 functional copies of mature TRH (pyr-QHP-NH 2 ), as compared to 4 and 6 copies of TRH in avian and mammalian proTRH sequences, respectively. It was found that in addition to its primary production site (brain for GHRH, PACAP, TRH and SST, and liver for IGF1), they were also expressed in other peripheral tissues, i.e. testes and ovaries expressed all the studied mRNAs, whereas TRH and IGF1 mRNAs were observed ubiquitously in all tissues considered. These results show that the main SA components in reptiles of the Squamata Order maintain a good structural conservation among vertebrate phylogeny, and suggest important physiological interactions (endocrine, autocrine and/or paracrine) between them due to their wide peripheral tissue expression. Copyright © 2017 Elsevier Inc. All rights reserved.

Bibliography on propulsion airframe integration technologies for high-speed civil transport applications, 1980-1991

NASA Technical Reports Server (NTRS)

Anderson, David J.; Mizukami, Masashi

1993-01-01

NASA has initiated the High Speed Research (HSR) program with the goal to develop technologies for a new generation, economically viable, environmentally acceptable, supersonic transport (SST) called the High Speed Civil Transport (HSCT). A significant part of this effort is expected to be in multidisciplinary systems integration, such as in propulsion airframe integration (PAI). In order to assimilate the knowledge database on PAI for SST type aircraft, a bibliography on this subject was compiled. The bibliography with over 1200 entries, full abstracts, and indexes. Related topics are also covered, such as the following: engine inlets, engine cycles, nozzles, existing supersonic cruise aircraft, noise issues, computational fluid dynamics, aerodynamics, and external interference. All identified documents from 1980 through early 1991 are included; this covers the latter part of the NASA Supersonic Cruise Research (SCR) program and the beginnings of the HSR program. In addition, some pre-1980 documents of significant merit or reference value are also included. The references were retrieved via a computerized literature search using the NASA RECON database system.

A chain-retrieval model for voluntary task switching.

PubMed

Vandierendonck, André; Demanet, Jelle; Liefooghe, Baptist; Verbruggen, Frederick

2012-09-01

To account for the findings obtained in voluntary task switching, this article describes and tests the chain-retrieval model. This model postulates that voluntary task selection involves retrieval of task information from long-term memory, which is then used to guide task selection and task execution. The model assumes that the retrieved information consists of acquired sequences (or chains) of tasks, that selection may be biased towards chains containing more task repetitions and that bottom-up triggered repetitions may overrule the intended task. To test this model, four experiments are reported. In Studies 1 and 2, sequences of task choices and the corresponding transition sequences (task repetitions or switches) were analyzed with the help of dependency statistics. The free parameters of the chain-retrieval model were estimated on the observed task sequences and these estimates were used to predict autocorrelations of tasks and transitions. In Studies 3 and 4, sequences of hand choices and their transitions were analyzed similarly. In all studies, the chain-retrieval model yielded better fits and predictions than statistical models of event choice. In applications to voluntary task switching (Studies 1 and 2), all three parameters of the model were needed to account for the data. When no task switching was required (Studies 3 and 4), the chain-retrieval model could account for the data with one or two parameters clamped to a neutral value. Implications for our understanding of voluntary task selection and broader theoretical implications are discussed. Copyright © 2012 Elsevier Inc. All rights reserved.

The ocean-atmosphere response to wind-induced thermocline changes in the tropical South Western Indian Ocean

NASA Astrophysics Data System (ADS)

Manola, Iris; Selten, F. M.; de Ruijter, W. P. M.; Hazeleger, W.

2015-08-01

In the Indian Ocean basin the sea surface temperatures (SSTs) are most sensitive to changes in the oceanic depth of the thermocline in the region of the Seychelles Dome. Observational studies have suggested that the strong SST variations in this region influence the atmospheric evolution around the basin, while its impact could extend far into the Pacific and the extra-tropics. Here we study the adjustments of the coupled atmosphere-ocean system to a winter shallow doming event using dedicated ensemble simulations with the state-of-the-art EC-Earth climate model. The doming creates an equatorial Kelvin wave and a pair of westward moving Rossby waves, leading to higher SST 1-2 months later in the Western equatorial Indian Ocean. Atmospheric convection is strengthened and the Walker circulation responds with reduced convection over Indonesia and cooling of the SST in that region. The Pacific warm pool convection shifts eastward and an oceanic Kelvin wave is triggered at thermocline depth. The wave leads to an SST warming in the East Equatorial Pacific 5-6 months after the initiation of the Seychelles Dome event. The atmosphere responds to this warming with weak anomalous atmospheric convection. The changes in the upper tropospheric divergence in this sequence of events create large-scale Rossby waves that propagate away from the tropics along the atmospheric waveguides. We suggest to repeat these types of experiments with other models to test the robustness of the results. We also suggest to create the doming event in June so that the East-Pacific warming occurs in November when the atmosphere is most sensitive to SST anomalies and El Niño could possibly be triggered by the doming event under suitable conditions.

Sequential associative memory with nonuniformity of the layer sizes.

PubMed

Teramae, Jun-Nosuke; Fukai, Tomoki

2007-01-01

Sequence retrieval has a fundamental importance in information processing by the brain, and has extensively been studied in neural network models. Most of the previous sequential associative memory embedded sequences of memory patterns have nearly equal sizes. It was recently shown that local cortical networks display many diverse yet repeatable precise temporal sequences of neuronal activities, termed "neuronal avalanches." Interestingly, these avalanches displayed size and lifetime distributions that obey power laws. Inspired by these experimental findings, here we consider an associative memory model of binary neurons that stores sequences of memory patterns with highly variable sizes. Our analysis includes the case where the statistics of these size variations obey the above-mentioned power laws. We study the retrieval dynamics of such memory systems by analytically deriving the equations that govern the time evolution of macroscopic order parameters. We calculate the critical sequence length beyond which the network cannot retrieve memory sequences correctly. As an application of the analysis, we show how the present variability in sequential memory patterns degrades the power-law lifetime distribution of retrieved neural activities.

An Estimate of Low-Cloud Feedbacks from Variations of Cloud Radiative and Physical Properties with Sea Surface Temperature on Interannual Time Scales

NASA Technical Reports Server (NTRS)

Eitzen, Zachary A.; Xu, Kuan-Man; Wong, Takmeng

2011-01-01

Simulations of climate change have yet to reach a consensus on the sign and magnitude of the changes in physical properties of marine boundary layer clouds. In this study, the authors analyze how cloud and radiative properties vary with SST anomaly in low-cloud regions, based on five years (March 2000 - February 2005) of Clouds and the Earth s Radiant Energy System (CERES) -- Terra monthly gridded data and matched European Centre for Medium-Range Weather Forecasts (ECMWF) meteorological reanalaysis data. In particular, this study focuses on the changes in cloud radiative effect, cloud fraction, and cloud optical depth with SST anomaly. The major findings are as follows. First, the low-cloud amount (-1.9% to -3.4% /K) and the logarithm of low-cloud optical depth (-0.085 to -0.100/K) tend to decrease while the net cloud radiative effect (3.86 W/m(exp 2)/ K) becomes less negative as SST anomalies increase. These results are broadly consistent with previous observational studies. Second, after the changes in cloud and radiative properties with SST anomaly are separated into dynamic, thermodynamic, and residual components, changes in the dynamic component (taken as the vertical velocity at 700 hPa) have relatively little effect on cloud and radiative properties. However, the estimated inversion strength decreases with increasing SST, accounting for a large portion of the measured decreases in cloud fraction and cloud optical depth. The residual positive change in net cloud radiative effect (1.48 W/m(exp 2)/ K) and small changes in low-cloud amount (-0.81% to 0.22% /K) and decrease in the logarithm of optical depth (-0.035 to -0.046/ K) with SST are interpreted as a positive cloud feedback, with cloud optical depth feedback being the dominant contributor. Last, the magnitudes of the residual changes differ greatly among the six low-cloud regions examined in this study, with the largest positive feedbacks (approximately 4 W/m(exp 2)/ K) in the southeast and northeast Atlantic regions and a slightly negative feedback (-0.2 W/m(exp 2)/ K) in the south-central Pacific region. Because the retrievals of cloud optical depth and/or cloud fraction are difficult in the presence of aerosols, the transport of heavy African continental aerosols may contribute to the large magnitudes of estimated cloud feedback in the two Atlantic regions.

The vertical dependence in the horizontal variability of salinity and temperature at the ocean surface

NASA Astrophysics Data System (ADS)

Asher, W.; Drushka, K.; Jessup, A. T.; Clark, D.

2016-02-01

Satellite-mounted microwave radiometers measure sea surface salinity (SSS) as an area-averaged quantity in the top centimeter of the ocean over the footprint of the instrument. If the horizontal variability in SSS is large inside this footprint, sub-grid-scale variability in SSS can affect comparison of the satellite-retrieved SSS with in situ measurements. Understanding the magnitude of horizontal variability in SSS over spatial scales that are relevant to the satellite measurements is therefore important. Horizontal variability of SSS at the ocean surface can be studied in situ using data recorded by thermosalinographs (TSGs) that sample water from a depth of a few meters. However, it is possible measurements made at this depth might underestimate the horizontal variability at the surface because salinity and temperature can become vertically stratified in a very near surface layer due to the effects of rain, solar heating, and evaporation. This vertical stratification could prevent horizontal gradients from propagating to the sampling depths of ship-mounted TSGs. This presentation will discuss measurements made using an underway salinity profiling system installed on the R/V Thomas Thompson that made continuous measurements of SSS and SST in the Pacific Ocean. The system samples at nominal depths of 2-m, 3-m, and 5-m, allowing the depth dependence of the horizontal variability in SSS and SST to be measured. Horizontal variability in SST is largest at low wind speeds during daytime, when a diurnal warm layer forms. In contrast, the diurnal signal in the variability of SSS was smaller with variability being slightly larger at night. When studied as a function of depth, the results show that over 100-km scales, the horizontal variability in both SSS and SST at a depth of 2 m is approximately a factor of 4 higher than the variability at 5 m.

An Approach to Evaluate the Spatial Fidelity of Satellite-Derived Sea Surface Temperature Fields

NASA Astrophysics Data System (ADS)

Cornillon, P. C.; Wu, F.; Guan, L.; Boussidi, B.

2016-12-01

An approach to evaluate the spatial fidelity of satellite-derived SST fields for spatial scales in the range of one to a few tens of pixels is presented. The approach is based on spatial spectra of the SST fields in an oceanographically `quiet' region, the Sargasso Sea between the southern edge of the Gulf Stream and Bermuda. Spectra are relatively isotropic in this region, allowing for analysis of the spectra in along-scan and cross-scan directions for level 2 fields and in coordinate directions for level 3 and level 4 fields, and spectral energy levels tend to be low for the ocean, allowing for a diagnosis of the pixel-to-pixel noise levels in the associated spectra. The focus on the spatial fidelity of the derived fields is intended to fill a gap in the measure of the overall quality of satellite-derived SST fields. To date the primary measure of these data has been via the comparison of in situ buoy measurements with `match-ups' from the satellite-derived fields. Such measures provide for the accuracy of the retrievals but not of their spatial precision. The approach presented here addresses the latter. Spectra obtained in this region from the satellite-borne sensors are compared with those obtained from a thermal recorder on the container ship Oleander making weekly roundtrips between Port Elizabeth, NJ and Bermuda. To demonstrate the approach, it is applied to Level 2 VIIRS and AVHRR SST fields. The most accurate spectra for VIIRS fields are obtained for nighttime sections in the along-scan direction within 500 km of nadir. Along-track sections show signs of banding from the multiple detectors of the VIIRS instrument. By contrast AVHRR spectra show elevated energy at the submesoscale (<25km), likely due to instrument noise but poor cloud-screening may also contribute the spectral energy at these scales.

Information Retrieval: A Sequential Learning Process.

ERIC Educational Resources Information Center

Bookstein, Abraham

1983-01-01

Presents decision-theoretic models which intrinsically include retrieval of multiple documents whereby system responds to request by presenting documents to patron in sequence, gathering feedback, and using information to modify future retrievals. Document independence model, set retrieval model, sequential retrieval model, learning model,…

Somatostatin and its receptors contribute in a tissue-specific manner to the sex-dependent metabolic (fed/fasting) control of growth hormone axis in mice

PubMed Central

Córdoba-Chacón, José; Gahete, Manuel D.; Castaño, Justo P.; Kineman, Rhonda D.

2011-01-01

Somatostatin (SST) inhibits growth hormone (GH) secretion and regulates multiple processes by signaling through its receptors sst1–5. Differential expression of SST/ssts may contribute to sex-specific GH pattern and fasting-induced GH rise. To further delineate the tissue-specific roles of SST and sst1–5 in these processes, their expression patterns were evaluated in hypothalamus, pituitary, and stomach of male and female mice under fed/fasted conditions in the presence (wild type) or absence (SST-knockout) of endogenous SST. Under fed conditions, hypothalamic/stomach SST/ssts expression did not differ between sexes, whereas male pituitary expressed more SST and sst2A/2B/3/5A/5TMD2/5TMD1 and less sst1, and male pituitary cell cultures were more responsive to SST inhibitory actions on GH release compared with females. This suggests that local pituitary SST/ssts can contribute to the sexually dimorphic pattern of GH release. Fasting (48 h) reduced stomach sst2A/B and hypothalamic SST/sst2A expression in both sexes, whereas it caused a generalized downregulation of pituitary sst subtypes in male and of sst2A only in females. Thus, fasting can reduce SST sensitivity across tissues and SST input to the pituitary, thereby jointly contributing to enhance GH release. In SST-knockout mice, lack of SST differentially altered sst subtype expression levels in both sexes, supporting an important role for SST in sex-dependent control of GH axis. Evaluation of SST, IGF-I, and glucocorticoid effects on hypothalamic and pituitary cell cultures revealed that these hormones could directly account for alterations in sst2/5 expression in the physiological states examined. Taken together, these results indicate that changes in SST output and sensitivity can contribute critically to precisely define, in a tissue-dependent manner, the sex-specific metabolic regulation of the GH axis. PMID:20943754

Validation of the AATSR L2 GSST product with in situ measurements from the M-AERI

NASA Astrophysics Data System (ADS)

Noyes, E.; Minnett, P.; Remedios, J.; Mannerings, B.; Corlett, G.; Edwards, M.; Llewellyn-Jones, D.

Precise, in situ, measurements of skin Sea Surface Temperature (SSST) have been obtained over the Eastern Caribbean Sea, using the Marine Atmospheric Emitted Radiance Interferometer (M-AERI) deployed onboard the Explorer of the Seas cruise ship. These measurements provide a near-continuous SSST dataset and have been used to validate the Advanced Along-Track Scanning Radiometer (AATSR) Level 2 operational dual-view Gridded Sea Surface Temperature (GSST) product over the area. The (A)ATSR instrument has a unique design in that it has both a nadir- and forward-view, allowing the Earth's surface to be viewed along two different atmospheric path lengths and enabling an improved atmospheric correction to be made when retrieving measurements of SST. The infrared radiometer also uses an innovative and exceptionally stable on-board calibration system, which, together with actively cooled detectors, gives exceptionally high radiometric sensitivity and precision, enabling SSTs to be retrieved to within ± 0.3 K (1-sigma limit). The unprecedented number of measurements provided by the M-AERI project enables us to validate the AATSR SST products on a scale that has not been possible with its two predecessors, ATSR-1 and ATSR-2. Validation results obtained between September 2002 and September 2003 are presented and indicate that, although the AATSR appears to measure slightly warm (circa + 0.14 K), the GSST product is accurate to within 0.28-0.41 K (Root Mean Square difference) in this geographical region, depending on the validation criteria used. We also present the results of further investigations into a number of validation points that do not fall within the target ± 0.3 K accuracy zone.

A virtual reality application in role-plays of social skills training for schizophrenia: a randomized, controlled trial.

PubMed

Park, Kyung-Min; Ku, Jeonghun; Choi, Soo-Hee; Jang, Hee-Jeong; Park, Ji-Yeon; Kim, Sun I; Kim, Jae-Jin

2011-09-30

Although social skills training (SST) is an effective approach for improving social skills for schizophrenia, the motivational deficit attenuates its efficacy. Virtual reality (VR) applications have allowed individuals with mental disabilities to enhance their motivation for rehabilitation. We compared SST using VR role-playing (SST-VR) to SST using traditional role-playing (SST-TR). This randomized, controlled trial included 91 inpatients with schizophrenia who were assigned to either SST-VR (n=46) or SST-TR (n=45). Both groups were administered over 10 semiweekly group sessions. An experienced, blinded rater assessed vocal, nonverbal and conversational skills. We also obtained data on motivation for SST and various social abilities. Throughout the 10 sessions, the SST-VR group (n=33) showed greater interest in SST and generalization of the skills than the SST-TR group (n=31). After SST, the SST-VR group improved more in conversational skills and assertiveness than the SST-TR group, but less in nonverbal skills. The VR application in role-plays of SST for schizophrenia may be particularly beneficial in terms of improving the conversational skills and assertiveness, possibly through its advantages in enhancing motivation for SST and generalization of the skills, and thus it may be a useful supplement to traditional SST. Copyright © 2011 Elsevier Ltd. All rights reserved.

Transparent Information Systems through Gateways, Front Ends, Intermediaries, and Interfaces.

ERIC Educational Resources Information Center

Williams, Martha E.

1986-01-01

Provides overview of design requirements for transparent information retrieval (implies that user sees through complexity of retrieval activities sequence). Highlights include need for transparent systems; history of transparent retrieval research; information retrieval functions (automated converters, routers, selectors, evaluators/analyzers);…

ACMES: fast multiple-genome searches for short repeat sequences with concurrent cross-species information retrieval

PubMed Central

Reneker, Jeff; Shyu, Chi-Ren; Zeng, Peiyu; Polacco, Joseph C.; Gassmann, Walter

2004-01-01

We have developed a web server for the life sciences community to use to search for short repeats of DNA sequence of length between 3 and 10 000 bases within multiple species. This search employs a unique and fast hash function approach. Our system also applies information retrieval algorithms to discover knowledge of cross-species conservation of repeat sequences. Furthermore, we have incorporated a part of the Gene Ontology database into our information retrieval algorithms to broaden the coverage of the search. Our web server and tutorial can be found at http://acmes.rnet.missouri.edu. PMID:15215469

SIRW: A web server for the Simple Indexing and Retrieval System that combines sequence motif searches with keyword searches.

PubMed

Ramu, Chenna

2003-07-01

SIRW (http://sirw.embl.de/) is a World Wide Web interface to the Simple Indexing and Retrieval System (SIR) that is capable of parsing and indexing various flat file databases. In addition it provides a framework for doing sequence analysis (e.g. motif pattern searches) for selected biological sequences through keyword search. SIRW is an ideal tool for the bioinformatics community for searching as well as analyzing biological sequences of interest.

Somatostatin and its 2A receptor in dorsal root ganglia and dorsal horn of mouse and human: expression, trafficking and possible role in pain

PubMed Central

2014-01-01

Background Somatostatin (SST) and some of its receptor subtypes have been implicated in pain signaling at the spinal level. In this study we have investigated the role of SST and its sst2A receptor (sst2A) in dorsal root ganglia (DRGs) and spinal cord. Results SST and sst2A protein and sst2 transcript were found in both mouse and human DRGs, sst2A-immunoreactive (IR) cell bodies and processes in lamina II in mouse and human spinal dorsal horn, and sst2A-IR nerve terminals in mouse skin. The receptor protein was associated with the cell membrane. Following peripheral nerve injury sst2A-like immunoreactivity (LI) was decreased, and SST-LI increased in DRGs. sst2A-LI accumulated on the proximal and, more strongly, on the distal side of a sciatic nerve ligation. Fluorescence-labeled SST administered to a hind paw was internalized and retrogradely transported, indicating that a SST-sst2A complex may represent a retrograde signal. Internalization of sst2A was seen in DRG neurons after systemic treatment with the sst2 agonist octreotide (Oct), and in dorsal horn and DRG neurons after intrathecal administration. Some DRG neurons co-expressed sst2A and the neuropeptide Y Y1 receptor on the cell membrane, and systemic Oct caused co-internalization, hypothetically a sign of receptor heterodimerization. Oct treatment attenuated the reduction of pain threshold in a neuropathic pain model, in parallel suppressing the activation of p38 MAPK in the DRGs Conclusions The findings highlight a significant and complex role of the SST system in pain signaling. The fact that the sst2A system is found also in human DRGs and spinal cord, suggests that sst2A may represent a potential pharmacologic target for treatment of neuropathic pain. PMID:24521084

A study on bulk and skin temperature difference using observations from Atlantic and Pacific Coastal regions of United States

NASA Astrophysics Data System (ADS)

Alappattu, Denny P.; Wang, Qing; Yamaguchi, Ryan; Lind, Richard; Reynolds, Mike; Christman, Adam

2017-05-01

Analysis of bulk-skin sea surface temperature (SST) difference form the west and east coasts of United States is presented using the data collected from three field experiments. These experiments were conducted at offshore Duck, North Carolina and in the Monterey Bay of the California coastal region. Bulk SST measurements were made using conventional thermistors from a depth of one meter below the sea level. Infrared radiometers were used to measure the surface skin SST. Depending on measurement depth and prevailing conditions, the bulk SST can differ from skin SST by few tenths of a degree to O(1°C). Difference between bulk and skin SST arise from cools skin and warm layer effects. Bulk-skin SST difference (ΔSST) estimated from east coast observations varied from -0.46°C to 1.24°C. Here, the bulk SST was higher than skin SST most of the time during the observations. This indicates cool skin effect was the dominant factor determining the ΔSST in the east coast. For wind speeds less than 4 m s-1, we also noticed an increase in ΔSST. Additionally, for low winds (<4 m s-1) ΔSST also varied diurnally with the occurrence of generally higher ΔSST in the nighttime in comparison with daytime. Moreover, increase in downwelling longwave radiation reduced the bulk-skin SST difference. ΔSST calculated from the observation in the Monterey bay varied between 2.3° and -2.3°C. This was higher than the variability ΔSST observed at the east coast. Moreover, ΔSST variability observed at west coast was independent of wind speed.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Chan, R.K.; Otte, C.A.

Saccharomyces cerevisiae MATa cells carrying mutations in either sst1 or sst2 are supersensitive to the G1 arrest induced by ..cap alpha.. factor pheromone. When sst1 mutants were mixed with normal SST/sup +/ cells, the entire population recovered together from ..cap alpha.. factor arrest, suggesting that SST/sup +/ cells helped sst1 mutants to recover. Complementation tests and linkage analysis showed that sst1 and bar1, a mutation which eliminates the ability of MATa cells to act as a ''barrier'' to the diffusion of ..cap alpha.. factor, were lesions in the same genes. These findings suggest that sst1 mutants are defective in recoverymore » from ..cap alpha.. factor arrest because they are unable to degrade the pheromone. In contrast, recovery of sst2 mutants was not potentiated by the presence of SST/sup +/ cells in mixing experiments. When either normal MATa cells or mutant cells carrying defects in sst1 or sst2 were exposed to ..cap alpha.. factor for 1 h and then washed free of the pheromone, the sst2 cells subsequently remained arrested in the absence of ..cap alpha.. factor for a much longer time than SST/sup +/ or sst1 cells. These observations suggest that the defect in sst2 mutants is intrinsic to the cell and is involved in the mechanism of ..cap alpha.. factor action at some step after the initial interaction of the pheromone with the cell. The presence of an sst2 mutation appears to cause a growth debility, since repeated serial subculture of haploid sst2-1 strains led to the accumulation of faster-growing revertants that were pheromone resistant and were mating defective (''sterile'').« less

Targeted Entry via Somatostatin Receptors Using a Novel Modified Retrovirus Glycoprotein That Delivers Genes at Levels Comparable to Those of Wild-Type Viral Glycoproteins

PubMed Central

Li, Fang; Ryu, Byoung Y.; Krueger, Robin L.; Heldt, Scott A.

2012-01-01

Here we report a novel viral glycoprotein created by replacing a natural receptor-binding sequence of the ecotropic Moloney murine leukemia virus envelope glycoprotein with the peptide ligand somatostatin. This new chimeric glycoprotein, which has been named the Sst receptor binding site (Sst-RBS), gives targeted transduction based on three criteria: (i) a gain of the use of a new entry receptor not used by any known virus; (ii) targeted entry at levels comparable to gene delivery by wild-type ecotropic Moloney murine leukemia virus and vesicular stomatitis virus (VSV) G glycoproteins; and (iii) a loss of the use of the natural ecotropic virus receptor. Retroviral vectors coated with Sst-RBS gained the ability to bind and transduce human 293 cells expressing somatostatin receptors. Their infection was specific to target somatostatin receptors, since a synthetic somatostatin peptide inhibited infection in a dose-dependent manner and the ability to transduce mouse cells bearing the natural ecotropic receptor was effectively lost. Importantly, vectors coated with the Sst-RBS glycoprotein gave targeted entry of up to 1 × 106 transducing U/ml, a level comparable to that seen with infection of vectors coated with the parental wild-type ecotropic Moloney murine leukemia virus glycoprotein through the ecotropic receptor and approaching that of infection of VSV G-coated vectors through the VSV receptor. To our knowledge, this is the first example of a glycoprotein that gives targeted entry of retroviral vectors at levels comparable to the natural capacity of viral envelope glycoproteins. PMID:22013043

Somatostatin: An endogenous antiepileptic

PubMed Central

Qiu, Cuie

2008-01-01

The neuropeptide somatostatin is highly expressed in brain regions associated with seizures. In hippocampus, SST expression and release is regulated by seizures, and SST-containing neurons within the hilus of the dentate gyrus are sensitive to seizure-induced death. In vivo and in vitro studies suggest that the loss of SST function in the dentate could contribute to epileptogenesis and seizure susceptibility. SST also has inhibitory actions in the CA1 and CA3 hippocampus, indicating this peptide is an important homeostatic regulator throughout the hippocampus. In vivo studies show SST has robust antiepileptic properties, with the major site of action being hippocampus. In rodents, somatostatin receptor subtype 2 (SST2) and SST4 appear to mediate the majority of the antiepileptic actions of SST, with SST2 predominate in rat and SST4 in mouse. Thus SST receptors may be appropriate targets for new antiepileptic drugs, although validation in human tissue is lacking. PMID:18221832

Global Ocean Evaporation: How Well Can We Estimate Interannual to Decadal Variability?

NASA Technical Reports Server (NTRS)

Robertson, Franklin R.; Bosilovich, Michael G.; Roberts, Jason B.; Wang, Hailan

2015-01-01

Evaporation from the world's oceans constitutes the largest component of the global water balance. It is important not only as the ultimate source of moisture that is tied to the radiative processes determining Earth's energy balance but also to freshwater availability over land, governing habitability of the planet. Here we focus on variability of ocean evaporation on scales from interannual to decadal by appealing to three sources of data: the new MERRA-2 (Modern-Era Retrospective analysis for Research and Applications -2); climate models run with historical sea-surface temperatures, ice and atmospheric constituents (so-called AMIP experiments); and state-of-the-art satellite retrievals from the Seaflux and HOAPS (Hamburg Ocean-Atmosphere Parameters and Fluxes from Satellite) projects. Each of these sources has distinct advantages as well as drawbacks. MERRA-2, like other reanalyses, synthesizes evaporation estimates consistent with observationally constrained physical and dynamical models-but data stream discontinuities are a major problem for interpreting multi-decadal records. The climate models used in data assimilation can also be run with lesser constraints such as with SSTs and sea-ice (i.e. AMIPs) or with additional, minimal observations of surface pressure and marine observations that have longer and less fragmentary observational records. We use the new ERA-20C reanalysis produced by ECMWF embodying the latter methodology. Still, the model physics biases in climate models and the lack of a predicted surface energy balance are of concern. Satellite retrievals and comparisons to ship-based measurements offer the most observationally-based estimates, but sensor inter-calibration, algorithm retrieval assumptions, and short records are dominant issues. Our strategy depends on maximizing the advantages of these combined records. The primary diagnostic tool used here is an analysis of bulk aerodynamic computations produced by these sources and uses a first-order Taylor series analysis of wind speed, SST, near-surface stability and relative humidity variations around climatology to gauge the importance of these components. We find that the MERRA-2 evaporation record is strongly influenced by the availability of wind speed and humidity from passive microwave imagers beginning in the late 1980s as well as by the SST record. The trend over the period 1980 to present is nearly 10%. AMIP or the ERA-20C trends are much smaller. We find that ENSO-related signals involving both wind speed and thermodynamic variability remain the primary signal in the latter and are confirmed by satellite retrievals. We present uncertainty estimates based on the various data sources and discuss the implications for GEWEX water and energy budget science challenges.

Indonesia sea surface temperature from TRMM Microwave Imaging (TMI) sensor

NASA Astrophysics Data System (ADS)

Marini, Y.; Setiawan, K. T.

2018-05-01

We analysis the Tropical Rainfall Measuring Mission's (TRMM) Microwave Imager (TMI) data to monitor the sea surface temperature (SST) of Indonesia waters for a decade of 2005-2014. The TMI SST data shows the seasonal and interannual SST in Indonesian waters. In general, the SST average was highest in March-May period with SST average was 29.4°C, and the lowest was in June – August period with the SST average was 28.5°C. The monthly SST average fluctuation of Indonesian waters for 10 years tends to increase. The lowest SST average of Indonesia occurred in August 2006 with the SST average was 27.6° C, while the maximum occurred in May 2014 with the monthly SST average temperature was 29.9 ° C.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Chan, R.K.; Otte, C.A.

Eight independently isolated mutants which are supersensitive (Sst/sup -/) to the G1 arrest induced by the tridecapeptide pheromone ..cap alpha.. factor were identified by screening mutagenized Saccharomyces cerevisiae MATa cells on solid medium for increased growth inhibition by ..cap alpha.. factor. These mutants carries lesions in two complementation groups, sst1 and sst2. Mutations at the sst1 locus were mating type specific: MATa sst1 cells were supersensitive to ..cap alpha.. factor, but MAT..cap alpha.. sst1 cells were not supersensitive to a factor. In contrast, mutations at the sst2 locus conferred supersensitivity to the pheromones of the opposite mating type on bothmore » MATa and MAT..cap alpha.. cells. Even in the absence of added ..cap alpha.. pheromone, about 10% of the cells in exponentially growing cultures of MATa strains carrying any of three different alleles of sst2 (including the ochre mutation sst2-4) had the aberrant morphology (''shmoo'' shape) that normally develops only after MATa cells are exposed to ..cap alpha.. factor. This ''self-shmooing'' phenotype was genetically linked to the sst2 mutations, although the leakiest allele isolated (sst2-3) did not display this characteristic. Normal MATa/MAT..cap alpha.. diploids do not respond to pheromones; diploids homozygous for an sst2 mutation (MATa/MAT..cap alpha.. sst2-1/sst2-1) were still insensitive to ..cap alpha.. factor. The sst1 gene was mapped to within 6.9 centimorgans of his6 on chromosome IX. The sst2 gene was unlinked to sst1, was not centromere linked, and was shown to be neither linked nor centromere distal to MAT on the right arm of chromosome III.« less

Endothelin-converting enzyme-1 degrades internalized somatostatin-14.

PubMed

Roosterman, Dirk; Kempkes, Cordula; Cottrell, Graeme S; Padilla, Benjamin E; Bunnett, Nigel W; Turck, Christoph W; Steinhoff, Martin

2008-05-01

Agonist-induced internalization of somatostatin receptors (ssts) determines subsequent cellular responsiveness to peptide agonists and influences sst receptor scintigraphy. To investigate sst2A trafficking, rat sst2A tagged with epitope was expressed in human embryonic kidney cells and tracked by antibody labeling. Confocal microscopical analysis revealed that stimulation with sst and octreotide induced internalization of sst2A. Internalized sst2A remained sequestrated within early endosomes, and 60 min after stimulation, internalized sst2A still colocalized with beta-arrestin1-enhanced green fluorescence protein (EGFP), endothelin-converting enzyme-1 (ECE-1), and rab5a. Internalized (125)I-Tyr(11)-SST-14 was rapidly hydrolyzed by endosomal endopeptidases, with radioactive metabolites being released from the cell. Internalized (125)I-Tyr(1)-octreotide accumulated as an intact peptide and was released from the cell as an intact peptide ligand. We have identified ECE-1 as one of the endopeptidases responsible for inactivation of internalized SST-14. ECE-1-mediated cleavage of SST-14 was inhibited by the specific ECE-1 inhibitor, SM-19712, and by preventing acidification of endosomes using bafilomycin A(1). ECE-1 cleaved SST-14 but not octreotide in an acidic environment. The metallopeptidases angiotensin-1 converting enzyme and ECE-2 did not hydrolyze SST-14 or octreotide. Our results show for the first time that stimulation with SST-14 and octreotide induced sequestration of sst2A into early endosomes and that endocytosed SST-14 is degraded by endopeptidases located in early endosomes. Furthermore, octreotide was not degraded by endosomal peptidases and was released as an intact peptide. This mechanism may explain functional differences between octreotide and SST-14 after sst2A stimulation. Moreover, further investigation of endopeptidase-regulated trafficking of neuropeptides may result in novel concepts of neuropeptide receptor inactivation in cancer diagnosis.

Continuous Estimates of Precipitable Water Vapor Within and Around Hurricane Systems

NASA Astrophysics Data System (ADS)

Braun, J. J.; Iwabuchi, T.; van Hove, T.

2008-12-01

This study investigates how estimates of precipitable water vapor (PW) from Global Positioning System (GPS) stations can be used to quantify how atmospheric moisture influences the intensity of tropical storms and hurricanes. The motivation for this study is based on the fact that hurricanes derive their strength through water vapor that is both evaporated from warm ocean surfaces and the existing moisture in the surrounding atmospheric environment. Observationally, there are relatively few instruments that can accurately measure water vapor in the presence of clouds and rain. Retrievals of PW using GPS stations may be the most reliable way to continuously monitor column integrated water vapor. Using storm information from the National Hurricane Center (www.nhc.noaa.gov), we have compared storm intensity to PW estimates for all tropical storms and hurricanes making landfall within 100-km of a GPS station between 2003 and 2008. We find that PW is inversely correlated (r**2 < -0.7) to the drop in surface pressure observed at that station. We have also begun to relate atmospheric PW at a station to the local sea surface temperature (SST). This comparison can be used to measure how strongly atmospheric water vapor and SST are coupled. It can also be used to measure how quickly the atmosphere responds to changes in SST. Finally we have compared the estimated PW to the Global Forecast System (GFS) analysis fields that are used to initialize numerical weather prediction models. This comparison indicates that the GFS analysis fields have significantly larger errors in atmospheric moisture in the Caribbean and Gulf of Mexico when compared to differences over the continental United States. These results illustrate that estimates of PW are an important data set for atmospheric scientists and forecasters attempting to improve the prediction of hurricane intensity.

Sensitive study of the climatological SST by using ATSR global SST data sets

NASA Astrophysics Data System (ADS)

Xue, Yong; Lawrence, Sean P.; Llewellyn-Jones, David T.

1995-12-01

Climatological sea surface temperature (SST) is an initial step for global climate processing monitoring. A comparison has been made by using Oberhuber's SST data set and two years monthly averaged SST from ATSR thermal band data to force the OGCM. In the eastern Pacific Ocean, these make only a small difference to model SST. In the western Pacific Ocean, the use of Oberhuber's data set gives higher climatological SST than that using ATSR data. The SSTs were also simulated for 1992 using climatological SSTs from two years monthly averaged ATSR data and Oberhuber data. The forcing with SST from ATSR data was found to give better SST simulation than that from Oberhuber's data. Our study has confirmed that ATSR can provide accurate monthly averaged global SST for global climate processing monitoring.

Development and Application of Sr/Ca-δ18O-Sea Surface Temperature calibrations for Last Glacial Maximum-Aged Isopora corals in the Great Barrier Reef

NASA Astrophysics Data System (ADS)

Brenner, L. D.; Linsley, B. K.; Potts, D. C.; Felis, T.; Mcgregor, H. V.; Gagan, M. K.; Inoue, M.; Tudhope, A. W.; Esat, T. M.; Thompson, W. G.; Tiwari, M.; Fallon, S.; Humblet, M.; Yokoyama, Y.; Webster, J.

2016-12-01

Isopora (Acroporidae) are sub-massive to massive corals found on most modern and fossil Indo-Pacific reefs. Despite their abundance, they are largely absent from the paleoceanographic literature but have the potential to provide proxy data where other commonly used corals, such as Porites, are sparse. The retrieval of Isopora fossils during International Ocean Discovery Program Leg 325 in the Great Barrier Reef (GBR) signaled the need to evaluate their possible paleoceanographic utility. We developed modern skeletal Sr/Ca- and δ18O-sea surface temperature (SST) calibrations for six modern Isopora colonies collected at Heron Island in the southern GBR. Pairing the coral Sr/Ca record with monthly SST data yielded Reduced Major Axis Sr/Ca- and δ18O-SST sensitivities of -0.054 mmol/mol/°C and -0.152 ‰/°C, respectively, falling within the range of published Porites values. We applied our Isopora-based regressions and previously published sensitivities from other species to a suite (n=37) of fossil samples collected from IODP 32. The calibrations produced a range of 3-7°C of warming, averaging 5°C, in the GBR from 22 ka to modern climate. This SST change is similar or slightly larger than other coral studies and larger than planktonic foraminifera Mg/Ca records. The planktonic Mg/Ca records from the Indonesian and Western Pacific Warm Pools indicate a warming of 3-3.5°C since 23ka (Linsley et al., 2010) while a fossil coral record from Tahiti indicates a warming of 3.2°C from 9.5ka to present (DeLong et al., 2010) and western Pacific coral records suggest a cooling of 5-6°C (Gagan et al., 2010; Guilderson et al., 1994: Beck et al., 1997), although these value might require rescaling (Gagan et al., 2012) resulting in slightly warmer temperature calculations. Our Isopora fossils from the GBR speak to the spatial heterogeneity of warming since the LGM and the continued need to develop more records for a more comprehensive understanding of the deglaciation.

Last Millennium ENSO-Mean State Interactions in the Tropical Pacific

NASA Astrophysics Data System (ADS)

Wyman, D. A.; Conroy, J. L.; Karamperidou, C.

2017-12-01

The nature and degree of interaction between the mean state of the tropical Pacific and ENSO remains an open question. Here we use high temporal resolution, tropical Pacific sea surface temperature (SST) records from the last millennium to investigate the relationship between ENSO and the tropical Pacific zonal sea surface temperature gradient (hereafter dSST). A dSST time series was created by standardizing, interpolating, and compositing 7 SST records from the western and 3 SST records from the eastern tropical Pacific. Propagating the age uncertainty of each of these records was accomplished through a Monte Carlo Empirical Orthogonal Function analysis. We find last millennium dSST is strong from 700 to 1300 CE, begins to weaken at approximately 1300 CE, and decreases more rapidly at 1700 CE. dSST was compared to 14 different ENSO reconstructions, independent of the records used to create dSST, to assess the nature of the ENSO-mean state relationship. dSST correlations with 50-year standard deviations of ENSO reconstructions are consistently negative, suggesting that more frequent, strong El Niño events on this timescale reduces dSST. To further assess the strength and direction of the ENSO-dSST relationship, moving 100-year standard deviations of ENSO reconstructions were compared to moving 100-year averages of dSST using Cohen's Kappa statistic, which measures categorical agreement. The Li et al. (2011) and Li et al. (2013) Nino 3.4 ENSO reconstructions had the highest agreement with dSST (k=0.80 and 0.70, respectively), with greater ENSO standard deviation coincident with periods of weak dSST. Other ENSO reconstructions showed weaker agreement with dSST, which may be partly due to low sample size. The consistent directional agreement of dSST with ENSO, coupled with the inability of strong ENSO events to develop under a weak SST gradient, suggests periods of more frequent strong El Niño events reduced tropical Pacific dSST on centennial timescales over the last millennium.

Assembly & Metrology of First Wall Components of SST-1

NASA Astrophysics Data System (ADS)

Parekh, Tejas; Santra, Prosenjit; Biswas, Prabal; Patel, Hiteshkumar; Paravastu, Yuvakiran; Jaiswal, Snehal; Chauhan, Pradeep; Babu, Gattu Ramesh; A, Arun Prakash; Bhavsar, Dhaval; Raval, Dilip C.; Khan, Ziauddin; Pradhan, Subrata

2017-04-01

First Wall Components (FWC) of SST-1 tokamak, which are in the immediate vicinity of plasma comprises of limiters, divertors, baffles, passive stabilizers are designed to operate long duration (1000 s) discharges of elongated plasma. All FWC consists of a copper alloy heat sink modules with SS cooling tubes brazed onto it, graphite tiles acting as armour material facing the plasma, and are mounted to the vacuum vessels with suitable Inconel support structures at ring & port locations. The FWC are very recently assembled and commissioned successfully inside the vacuum vessel of SST-1 undergoing a meticulous planning of assembly sequence, quality checks at every stage of the assembly process. This paper will present the metrology aspects & procedure of each FWC, both outside the vacuum vessel, and inside the vessel, assembly tolerances, tools, equipment and jig/fixtures, used at each stage of assembly, starting from location of support bases on vessel rings, fixing of copper modules on support structures, around 3800 graphite tile mounting on 136 copper modules with proper tightening torques, till final toroidal and poloidal geometry of the in-vessel components are obtained within acceptable limits, also ensuring electrical continuity of passive stabilizers to form a closed saddle loop, electrical isolation of passive stabilizers from vacuum vessel.

The Relationships between Tropical Pacific and Atlantic SST and Northeast Brazil Monthly Precipitation.

NASA Astrophysics Data System (ADS)

Bertacchi Uvo, Cintia; Repelli, Carlos A.; Zebiak, Stephen E.; Kushnir, Yochanan

1998-04-01

The monthly patterns of northeast Brazil (NEB) precipitation are analyzed in relation to sea surface temperature (SST) in the tropical Pacific and Atlantic Oceans, using singular value decomposition. It is found that the relationships between precipitation and SST in both basins vary considerably throughout the rainy season (February-May). In January, equatorial Pacific SST is weakly correlated with precipitation in small areas of southern NEB, but Atlantic SST shows no significant correlation with regional precipitation. In February, Pacific SST is not well related to precipitation, but south equatorial Atlantic SST is positively correlated with precipitation over the northern Nordeste, the latter most likely reflecting an anomalously early (or late) southward migration of the ITCZ precipitation zone. During March, equatorial Pacific SST is negatively correlated with Nordeste precipitation, but no consistent relationship between precipitation and Atlantic SST is found. Atlantic SST-precipitation correlations for April and May are the strongest found among all months or either ocean. Precipitation in the Nordeste is positively correlated with SST in the south tropical Atlantic and negatively correlated with SST in the north tropical Atlantic. These relationships are strong enough to determine the structure of the seasonal mean SST-precipitation correlations, even though the corresponding patterns for the earlier months of the season are quite different. Pacific SST-precipitation correlations for April and May are similar to those for March. Extreme wet (dry) years for the Nordeste occur when both Pacific and Atlantic SST patterns for April and May occur simultaneously. A separate analysis reinforces previous findings in showing that SST in the tropical Pacific and the northern tropical Atlantic are positively correlated and that tropical Pacific-south Atlantic correlations are negligible.Time-lagged analyses show the potential for forecasting either seasonal mean or monthly precipitation patterns with some degree of skill. In some instances, individual monthly mean SST versus seasonal mean (February-May) precipitation relationships differ considerably from the corresponding monthly SST versus monthly precipitation relationships. It is argued that the seasonal mean relationships result from the relatively strong monthly relationships toward the end of the season, combined with the considerable persistence of SST in both oceans.

Differential somatostatin, CXCR4 chemokine and endothelin A receptor expression in WHO grade I-IV astrocytic brain tumors.

PubMed

Lange, Franziska; Kaemmerer, Daniel; Behnke-Mursch, Julianne; Brück, Wolfgang; Schulz, Stefan; Lupp, Amelie

2018-04-25

Glioblastomas represent the most common primary malignant tumor of the nervous system and the most frequent type of astrocytic tumors. Despite improved therapeutic options, prognosis has remained exceptionally poor over the last two decades. Therefore, new treatment approaches are urgently needed. An overexpression of somatostatin (SST) as well as chemokine CXCR4 and endothelin A (ETA) receptors has been shown for many types of cancer. Respective expression data for astrocytic brain tumors, however, are scarce and contradictory. SST subtype, CXCR4 and ETA expression was comparatively evaluated in a total of 57 grade I-IV astrocytic tumor samples by immunohistochemistry using well-characterized monoclonal antibodies. Overall, receptor expression on the tumor cells was only very low. SST5 was the most prominently expressed receptor, followed by SST3, ETA, SST2 and CXCR4. In contrast, tumor capillaries displayed strong SST2, SST3, SST5, CXCR4 and ETA expression. Presence of SST5, CXCR4 and ETA on tumor cells and of SST3, CXCR4 and ETA on microvessels gradually increased from grade II to grade IV tumors. Ki-67 values correlated significantly with CXCR4 expression on tumor cells and with vascular SST3, CXCR4 or ETA positivity. SST5 or CXCR4 positivity of tumor cells and vascular SST3 or CXCR4 expression negatively correlated with patient outcome. Though having some prognostic value, SST, CXCR4 or ETA expression on astrocytic tumor cells is clearly of no therapeutic relevance. Indirect targeting of these highly vascularized tumors via SST3, SST5, CXCR4 or ETA on the microvessels, in contrast, may represent a promising additional therapeutic strategy.

Protective role of somatostatin receptor 2 against retinal degeneration in response to hypoxia.

PubMed

Dal Monte, Massimo; Latina, Valentina; Cupisti, Elena; Bagnoli, Paola

2012-05-01

In mouse retinal explants, octreotide, a somatostatin [somatotropin release-inhibiting factor (SRIF)] receptor 2 (sst(2)) agonist, prevents the hypoxia-induced vascular endothelial growth factor upregulation. In mice with oxygen-induced retinopathy (OIR), a model of retinopathy of prematurity, either sst(2) overexpression or octreotide have been found to limit hypoxia-induced angiogenic processes. Here, we investigated whether sst(2) influences retinal degeneration in response to hypoxia in wild-type (WT), sst(1)- and sst(2)-knockout (KO) mice. In retinal explants, we determined the role of sst(2) on apoptotic signals. In control condition, caspase-3 activity and the Bax/Bcl-2 ratio were lower in sst(1)-KO than in WT, but higher in sst(2)-KO than in WT retinas. In all strains, a comparable increase in caspase-3 activity and the Bax/Bcl-2 ratio was observed after hypoxia. The hypoxia-induced increase in apoptotic signals was recovered by octreotide in both WT and sst(1)-KO retinas. To investigate the role of sst(2) on retinal function, we recorded electroretinogram (ERG) in response to light flashes in OIR mice. ERG responses did not differ between WT and KO mice with the exception of oscillatory potentials (OPs) which, in sst(1)-KO mice, displayed much larger amplitude. In all strains, hypoxia drastically reduced a-, b-waves and OPs. In both WT and sst(1)-KO mice, octreotide recovered a- and b-waves, but did not recover OPs in sst(1)-KO mice. Neither apoptotic signals nor ERG was affected by octreotide in sst(2)-KO mice. These results show that sst(2) may protect retinal cells from hypoxia, thus implementing the background to establish potential pharmacological targets based on sst(2) pharmacology.

Warm layer and cool skin corrections for bulk water temperature measurements for air-sea interaction studies

NASA Astrophysics Data System (ADS)

Alappattu, Denny P.; Wang, Qing; Yamaguchi, Ryan; Lind, Richard J.; Reynolds, Mike; Christman, Adam J.

2017-08-01

The sea surface temperature (SST) relevant to air-sea interaction studies is the temperature immediately adjacent to the air, referred to as skin SST. Generally, SST measurements from ships and buoys are taken at depths varies from several centimeters to 5 m below the surface. These measurements, known as bulk SST, can differ from skin SST up to O(1°C). Shipboard bulk and skin SST measurements were made during the Coupled Air-Sea Processes and Electromagnetic ducting Research east coast field campaign (CASPER-East). An Infrared SST Autonomous Radiometer (ISAR) recorded skin SST, while R/V Sharp's Surface Mapping System (SMS) provided bulk SST from 1 m water depth. Since the ISAR is sensitive to sea spray and rain, missing skin SST data occurred in these conditions. However, SMS measurement is less affected by adverse weather and provided continuous bulk SST measurements. It is desirable to correct the bulk SST to obtain a good representation of the skin SST, which is the objective of this research. Bulk-skin SST difference has been examined with respect to meteorological factors associated with cool skin and diurnal warm layers. Strong influences of wind speed, diurnal effects, and net longwave radiation flux on temperature difference are noticed. A three-step scheme is established to correct for wind effect, diurnal variability, and then for dependency on net longwave radiation flux. Scheme is tested and compared to existing correction schemes. This method is able to effectively compensate for multiple factors acting to modify bulk SST measurements over the range of conditions experienced during CASPER-East.

Suitability of satellite derived and gridded sea surface temperature data sets for calibrating high-resolution marine proxy records

NASA Astrophysics Data System (ADS)

Ouellette, G., Jr.; DeLong, K. L.

2016-02-01

High-resolution proxy records of sea surface temperature (SST) are increasingly being produced using trace element and isotope variability within the skeletal materials of marine organisms such as corals, mollusks, sclerosponges, and coralline algae. Translating the geochemical variations within these organisms into records of SST requires calibration with SST observations using linear regression methods, preferably with in situ SST records that span several years. However, locations with such records are sparse; therefore, calibration is often accomplished using gridded SST data products such as the Hadley Center's HADSST (5º) and interpolated HADISST (1º) data sets, NOAA's extended reconstructed SST data set (ERSST; 2º), optimum interpolation SST (OISST; 1º), and Kaplan SST data sets (5º). From these data products, the SST used for proxy calibration is obtained for a single grid cell that includes the proxy's study site. The gridded data sets are based on the International Comprehensive Ocean-Atmosphere Data Set (ICOADS) and each uses different methods of interpolation to produce the globally and temporally complete data products except for HadSST, which is not interpolated but quality controlled. This study compares SST for a single site from these gridded data products with a high-resolution satellite-based SST data set from NOAA (Pathfinder; 4 km) with in situ SST data and coral Sr/Ca variability for our study site in Haiti to assess differences between these SST records with a focus on seasonal variability. Our results indicate substantial differences in the seasonal variability captured for the same site among these data sets on the order of 1-3°C. This analysis suggests that of the data products, high-resolution satellite SST best captured seasonal variability at the study site. Unfortunately, satellite SST records are limited to the past few decades. If satellite SST are to be used to calibrate proxy records, collecting modern, living samples is desirable.

Endothelin-Converting Enzyme-1 Degrades Internalized Somatostatin-14

PubMed Central

Roosterman, Dirk; Kempkes, Cordula; Cottrell, Graeme S.; Padilla, Benjamin E.; Bunnett, Nigel W.; Turck, Christoph W.; Steinhoff, Martin

2008-01-01

Agonist-induced internalization of somatostatin receptors (ssts) determines subsequent cellular responsiveness to peptide agonists and influences sst receptor scintigraphy. To investigate sst2A trafficking, rat sst2A tagged with epitope was expressed in human embryonic kidney cells and tracked by antibody labeling. Confocal microscopical analysis revealed that stimulation with sst and octreotide induced internalization of sst2A. Internalized sst2A remained sequestrated within early endosomes, and 60 min after stimulation, internalized sst2A still colocalized with β-arrestin1-enhanced green fluorescence protein (EGFP), endothelin-converting enzyme-1 (ECE-1), and rab5a. Internalized 125I-Tyr11-SST-14 was rapidly hydrolyzed by endosomal endopeptidases, with radioactive metabolites being released from the cell. Internalized 125I-Tyr1-octreotide accumulated as an intact peptide and was released from the cell as an intact peptide ligand. We have identified ECE-1 as one of the endopeptidases responsible for inactivation of internalized SST-14. ECE-1-mediated cleavage of SST-14 was inhibited by the specific ECE-1 inhibitor, SM-19712, and by preventing acidification of endosomes using bafilomycin A1. ECE-1 cleaved SST-14 but not octreotide in an acidic environment. The metallopeptidases angiotensin-1 converting enzyme and ECE-2 did not hydrolyze SST-14 or octreotide. Our results show for the first time that stimulation with SST-14 and octreotide induced sequestration of sst2A into early endosomes and that endocytosed SST-14 is degraded by endopeptidases located in early endosomes. Furthermore, octreotide was not degraded by endosomal peptidases and was released as an intact peptide. This mechanism may explain functional differences between octreotide and SST-14 after sst2A stimulation. Moreover, further investigation of endopeptidase-regulated trafficking of neuropeptides may result in novel concepts of neuropeptide receptor inactivation in cancer diagnosis. PMID:18276747

Roles of Hippocampal Somatostatin Receptor Subtypes in Stress Response and Emotionality.

PubMed

Prévôt, Thomas D; Gastambide, François; Viollet, Cécile; Henkous, Nadia; Martel, Guillaume; Epelbaum, Jacques; Béracochéa, Daniel; Guillou, Jean-Louis

2017-07-01

Altered brain somatostatin functions recently appeared as key elements for the pathogenesis of stress-related neuropsychiatric disorders. The hippocampus exerts an inhibitory feedback on stress but the mechanisms involved remain unclear. We investigated herein the role of hippocampal somatostatin receptor subtypes in both stress response and behavioral emotionality using C57BL/6, wild type and sst 2 or sst 4 knockout mice. Inhibitory effects of hippocampal infusions of somatostatin agonists on stress-induced hypothalamo-pituitary-adrenal axis (HPA) activity were tested by monitoring peripheral blood and local hippocampus corticosterone levels, the latter by using microdialysis. Anxiolytic and antidepressant-like effects were determined in the elevated-plus maze, open field, forced swimming, and stress-sensitive beam walking tests. Hippocampal injections of somatostatin analogs and sst 2 or sst 4, but not sst 1 or sst 3 receptor agonists produced rapid and sustained inhibition of HPA axis. sst 2 agonists selectively produced anxiolytic-like behaviors whereas both sst 2 and sst 4 agonists had antidepressant-like effects. Consistent with these findings, high corticosterone levels and anxiety were found in sst 2 KO mice and depressive-like behaviors observed in both sst 2 KO and sst 4 KO strains. Both hippocampal sst 2 and sst 4 receptors selectively inhibit stress-induced HPA axis activation but mediate anxiolytic and antidepressive effects through distinct mechanisms. Such results are to be accounted for in development of pathway-specific somatostatin receptor agents in the treatment of hypercortisolism (Cushing's disease) and stress-related neuropsychiatric disorders.

Octreotide and pasireotide (dis)similarly inhibit pituitary tumor cells in vitro.

PubMed

Ibáñez-Costa, Alejandro; Rivero-Cortés, Esther; Vázquez-Borrego, Mari C; Gahete, Manuel D; Jiménez-Reina, Luis; Venegas-Moreno, Eva; de la Riva, Andrés; Arráez, Miguel Ángel; González-Molero, Inmaculada; Schmid, Herbert A; Maraver-Selfa, Silvia; Gavilán-Villarejo, Inmaculada; García-Arnés, Juan Antonio; Japón, Miguel A; Soto-Moreno, Alfonso; Gálvez, María A; Luque, Raúl M; Castaño, Justo P

2016-11-01

Somatostatin analogs (SSA) are the mainstay of pharmacological treatment for pituitary adenomas. However, some patients escape from therapy with octreotide, a somatostatin receptor 2 (sst2)-preferring SSA, and pasireotide, a novel multi-sst-preferring SSA, may help to overcome this problem. It has been proposed that correspondence between sst1-sst5 expression pattern and SSA-binding profile could predict patient's response. To explore the cellular/molecular features associated with octreotide/pasireotide response, we performed a parallel comparison of their in vitro effects, evaluating sst1-sst5 expression, intracellular Ca 2+ signaling ([Ca 2+ ] i ), hormone secretion and cell viability, in a series of 85 pituitary samples. Somatotropinomas expressed sst5>sst2, yet octreotide reduced [Ca 2+ ] i more efficiently than pasireotide, while both SSA similarly decreased growth hormone release/expression and viability. Corticotropinomas predominantly expressed sst5, but displayed limited response to pasireotide, while octreotide reduced functional endpoints. Non-functioning adenomas preferentially expressed sst3 but, surprisingly, both SSA increased cell viability. Prolactinomas mainly expressed sst1 but were virtually unresponsive to SSA. Finally, both SSA decreased [Ca 2+ ] i in normal pituitaries. In conclusion, both SSA act in vitro on pituitary adenomas exerting both similar and distinct effects; however, no evident correspondence was found with the sst1-sst5 profile. Thus, it seems plausible that additional factors, besides the simple abundance of a given sst, critically influence the SSA response. © 2016 Society for Endocrinology.

A Regulation of Tropical Climate by Radiative Cooling as Simulated in a Cumulus Ensemble Model

NASA Technical Reports Server (NTRS)

Sui, Chung-Hsiung; Lau, K.-M.; Li, X.; Chou, M.-D.; Einaudi, Franco (Technical Monitor)

2000-01-01

Responses of tropical atmosphere to low-boundary forcing are investigated in a 2-D cumulus ensemble model (CEM) with an imposed warm-pool and cold-pool SST contrast (deltaSST). The domain-mean vertical motion is constrained to produce heat sink and moisture source as in the observed tropical climate. In a series of experiments, the warm pool SST is specified at different values while the cold pool SST is specified at 26 C. The strength of the circulation increases with increasing deltaSST until deltaSST reaches 3.5 C, and remains unchanged as deltaSST exceeds 3.5 C. The regulation of tropical convection by zonal SST gradient is constrained by the radiative cooling over the cold pool. For deltaSST less than 3.5 C, an enhanced subsidence warming is balanced by a reduced condensation heating over the cold pool. For deltaSST greater than 3.5 C, the subsidence regime expands over the entire cold pool where no condensation heating exist so that a further enhanced subsidence warming can no longer be sustained. The above regulation mechanism is also evident in the change of energy at the top of the atmosphere (TOA) that is dominated by cloud and water vapor greenhouse effect (c (sub LW)) and G (sub clear). The change in shortwave radiation at TOA is largely cancelled between the warm pool and cold pool, likely due to the same imposed vertical motion in our experiments. For deltaSST less than 3.5 C, an increase of deltaSST is associated with a large increase in c (sub Lw) due to increased total clouds in response to enhanced SST-induced circulation. For deltaSST greater than 3.5 C, clouds over the warm pool decrease with increasing SST, and the change in c (sub LW) is much smaller. In both dSST regimes, the change in CLW is larger than the change in G(sub clear) which is slightly negative. However, in the case of uniform warming (deltaSST=0), DeltaG(sub clear), is positive, approximately 5 W per square meters per degree change of SST.

CFS Forecast Verification

Science.gov Websites

history of Nino3.4 SST anomalies of individual forecasts Forecast anomalies Target season Nino SST Global SST Global Prec Global T2m US Prec US T2m US SM z200 NDJ 2004/2005 Nino SST Global SST Global Prec Global T2m US Prec US T2m US SM z200 DJF 2005 Nino SST Global SST Global Prec Global T2m US Prec US T2m

Differential plastic changes in synthesis and binding in the mouse somatostatin system after electroconvulsive stimulation.

PubMed

Olesen, Mikkel Vestergaard; Gøtzsche, Casper René; Christiansen, Søren Hofman; Woldbye, David Paul Drucker

2018-03-21

Electroconvulsive therapy (ECT) is regularly used to treat patients with severe major depression, but the mechanisms underlying the beneficial effects remain uncertain. Electroconvulsive stimulation (ECS) regulates diverse neurotransmitter systems and induces anticonvulsant effects, properties implicated in mediating therapeutic effects of ECT. Somatostatin (SST) is a candidate for mediating these effects because it is upregulated by ECS and exerts seizure-suppressant effects. However, little is known about how ECS might affect the SST receptor system. The present study examined effects of single and repeated ECS on the synthesis of SST receptors (SSTR1-4) and SST, and SST receptor binding ([125I]LTT-SST28) in mouse hippocampal regions and piriform/parietal cortices. A complex pattern of plastic changes was observed. In the dentate gyrus, SST and SSTR1 expression and the number of hilar SST immunoreactive cells were significantly increased at 1 week after repeated ECS while SSTR2 expression was downregulated by single ECS, and SSTR3 mRNA and SST binding were elevated 24 h after repeated ECS. In hippocampal CA1 and parietal/piriform cortices, we found elevated SST mRNA levels 1 week after repeated ECS and elevated SST binding after single ECS and 24 h after repeated ECS. In hippocampal CA3, repeated ECS increased SST expression 1 week after and SST binding 24 h after. In the parietal cortex, SSTR2 mRNA expression was downregulated after single ECS while SSTR4 mRNA expression was upregulated 24 h after repeated ECS. Considering the known anticonvulsant effects of SST, it is likely that these ECS-induced neuroplastic changes in the SST system could participate in modulating neuronal excitability and potentially contribute to therapeutic effects of ECT.

Somatostatin type-2 receptor activation inhibits glutamate release and prevents status epilepticus

PubMed Central

Kozhemyakin, Maxim; Rajasekaran, Karthik; Todorovic, Marko S.; Kowalski, Samuel L.; Balint, Corinne; Kapur, Jaideep

2013-01-01

Summary Newer therapies are needed for the treatment of status epilepticus (SE) refractory to benzodiazepines. Enhanced glutamatergic neurotransmission leads to SE, and AMPA receptors are modified during SE. Reducing glutamate release during SE is a potential approach to terminate SE. The neuropeptide somatostatin (SST) is proposed to diminish presynaptic glutamate release by activating SST type-2 receptors (SST2R). SST exerts an anticonvulsant action in some experimental models of seizures. Here, we investigated the mechanism of action of SST on excitatory synaptic transmission at the Schaffer collateral-CA1 synapses and the ability of SST to treat SE in rats using patch-clamp electrophysiology and video-EEG monitoring of seizures. SST reduced action potential-dependent EPSCs (sEPSCs) at Schaffer collateral-CA1 synapses at concentrations up to 1 μM; higher concentrations had no effect or increased the sEPSC frequency. SST also prevented paired-pulse facilitation of evoked EPSCs and did not alter action-potential-independent miniature EPSCs (mEPSCs). The effect of SST on EPSCs was inhibited by the SST2R antagonist cyanamid-154806 and was mimicked by the SST2R agonists, octreotide and lanreotide. Both SST and octreotide reduced the firing rate of CA1 pyramidal neurons. Intraventricular administration of SST, within a range of doses, either prevented or attenuated pilocarpine-induced SE or delayed the median time to the first grade 5 seizure by 11 min. Similarly, octreotide or lanreotide prevented or attenuated SE in more than 65% of animals. Compared to the pilocarpine model, octreotide was highly potent in preventing or attenuating continuous hippocampal stimulation-induced SE in all animals within 60 min of SE onset. Our results demonstrate that SST, through the activation of SST2Rs, diminishes presynaptic glutamate release and attenuates SE. PMID:23473742

Formation of the southern Bay of Bengal cold pool

NASA Astrophysics Data System (ADS)

Das, Umasankar; Vinayachandran, P. N.; Behara, Ambica

2016-09-01

A pool of relatively cooler water, called here as the southern Bay of Bengal cold pool, exists around Sri Lanka and southern tip of India during the summer monsoon. This cold pool is enveloped by the larger Indian Ocean warm pool and is believed to affect the intraseasonal variations of summer monsoon rainfall. In this study, we have investigated the mechanisms responsible for the formation of the cold pool using a combination of both satellite data sets and a general circulation model of the Indian Ocean. Sea surface temperature (SST) within the cold pool, after the steady increase during the February-April period, decreases first during a pre-monsoon spell in April and then with the monsoon onset during May. The onset cooling is stronger (~1.8°C) than the pre-monsoon cooling (~0.8°C) and culminates in the formation of the cold pool. Analysis of the model temperature equation shows that SST decrease during both events is primarily due to a decrease in incoming solar radiation and an increase in latent heat loss. These changes in the net heat flux are brought about by the arrival of cloud bands above the cold pool during both periods. During the pre-monsoon period, a cloud band originates in the western equatorial Indian Ocean and subsequently arrives above the cold pool. Similarly, during the monsoon onset, a band of clouds originating in the eastern equatorial Indian Ocean comes over the cold pool region. A lead-lag correlation calculation between daily SST and rainfall anomalies suggest that cooling in SST occurs in response to rainfall events with a lag of 5 days. These sequence of events occur every year with certain amount of interannual variability.

A Transcriptome-Led Exploration of Molecular Mechanisms Regulating Somatostatin-Producing D-Cells in the Gastric Epithelium

PubMed Central

Adriaenssens, Alice; Lam, Brian Yee Hong; Billing, Lawrence; Skeffington, Katie; Sewing, Sabine

2015-01-01

The stomach epithelium contains a myriad of enteroendocrine cells that modulate a range of physiological functions, including postprandial secretion of regulatory peptides, gastric motility, and nutrient absorption. Somatostatin (SST)-producing D-cells are present in the oxyntic and pyloric regions of the stomach, and provide a tonic inhibitory tone that regulates activity of neighboring enteroendocrine cells and gastric acid secretion. Cellular mechanisms underlying the effects of regulatory factors on gastric D-cells are poorly defined due to problems in identifying primary D-cells, and uncertainty remains about which stimuli influence D-cells directly. In this study, we introduce a transgenic mouse line, SST-Cre, which upon crossing with Cre reporter strains, facilitates the identification and purification of gastric D-cells, or cell-specific expression of genetically encoded calcium indicators. Populations of D-cells from the gastric antrum and corpus were isolated and analyzed by RNA sequencing and quantitative RT-PCR. The expression of hormones, hormone receptors, neurotransmitter receptors, and nutrient receptors was quantified. Pyy, Gipr, Chrm4, Calcrl, Taar1, and Casr were identified as genes that are highly enriched in D-cells compared with SST-negative cells. Hormone secretion assays performed in mixed gastric epithelial cultures confirmed that SST secretion is regulated by incretin hormones, cholecystokinin, acetylcholine, vasoactive intestinal polypeptide, calcitonin gene-related polypeptide, oligopetides, and trace amines. Cholecystokinin and oligopeptides elicited increases in intracellular calcium in single-cell imaging experiments performed using cultured D-cells. Our data provide the first transcriptomic analysis and functional characterization of gastric D-cells, and identify regulatory pathways that underlie the direct detection of stimuli by this cell type. PMID:26241122

Interbasin Differences in the Relationship between SST and Tropical Cyclone Intensification

DOE Office of Scientific and Technical Information (OSTI.GOV)

Foltz, Gregory R.; Balaguru, Karthik; Hagos, Samson

Sea surface temperature (SST) is one of the most important parameters for tropical cyclone (TC) intensification. Here it is shown that the impact of SST on TC intensification varies considerably from basin to basin, with SST explaining less than 3% of the variance in TC intensification rates in the Atlantic, 10% in the western North Pacific, and 17% in the eastern Pacific. Two main factors are shown to be responsible for these inter-basin differences. First, variability of SST along TCs’ tracks is considerably lower in the Atlantic. This is due to smaller horizontal SST gradients in the Atlantic compared tomore » the eastern Pacific and stronger damping of pre-storm SST’s contribution to TC intensification by the storm-induced cold SST wake in the Atlantic. The damping occurs because SST tends to vary in phase with TC- induced SST cooling: in the Gulf of Mexico and northwestern basin where SSTs are highest, TCs’ translation speeds are lowest and therefore their cold wakes are strongest. In addition to this SST effect, a second factor is that SST tends to vary out of phase with vertical wind shear and outflow temperature in the western Pacific, with high SST associated with weak wind shear and a cold upper troposphere. This strengthens the relationship between SST and TC intensification more in the western Pacific than in the eastern Pacific or Atlantic. Combined, these factors explain why pre-storm SST is such a poor predictor of TC intensification in the Atlantic compared to the eastern and western North Pacific.« less

Central administration of pansomatostatin agonist ODT8-SST prevents abdominal surgery-induced inhibition of circulating ghrelin, food intake and gastric emptying in rats

PubMed Central

STENGEL, A.; GOEBEL-STENGEL, M.; WANG, L.; LUCKEY, A.; HU, E.; RIVIER, J.; TACHÉ, Y.

2011-01-01

Background Activation of brain somatostatin receptors (sst1-5) with the stable pan-sst1-5 somatostatin agonist, ODT8-SST blocks acute stress and central corticotropin-releasing factor (CRF)-mediated activation of endocrine adrenal sympathetic responses. Brain CRF signaling is involved in delaying gastric emptying (GE) immediately post surgery. We investigated whether activation of brain sst signaling pathways modulates surgical stress-induced inhibition of gastric emptying and food intake. Methods Fasted rats were injected intracisternally (i.c.) with somatostatin agonists and underwent laparotomy and 1-min cecal palpation. GE of a non-nutrient solution and circulating acyl and desacyl ghrelin levels were assessed 50 min post surgery. Food intake was monitored for 24h. Key results The abdominal surgery-induced inhibition of GE (65%), food intake (73% at 2h) and plasma acyl ghrelin levels (67%) was completely prevented by ODT8-SST (1μg/rat, i.c.). The selective sst5 agonist, BIM-23052 prevented surgery-induced delayed GE, whereas selective sst1, sst2 or sst4 agonists had no effect. However, the selective sst2 agonist, S-346-011 (1μg/rat, i.c.) counteracted the abdominal surgery-induced inhibition of acyl ghrelin and food intake but not the delayed GE. The ghrelin receptor antagonist, [D-Lys3]-GHRP-6 (0.93 mg/kg, intraperitoneal, i.p.) blocked i.p. ghrelin-induced increased GE, while not influencing i.c. ODT8-SST-induced prevention of delayed GE and reduced food intake after surgery. Conclusions & Inferences ODT8-SST acts in the brain to prevent surgery-induced delayed GE likely via activating sst5. ODT8-SST and the sst2 agonist prevent the abdominal surgery-induced decrease in food intake and plasma acyl ghrelin indicating dissociation between brain somatostatin signaling involved in preventing surgery-induced suppression of GE and feeding response. PMID:21569179

Agonist-biased trafficking of somatostatin receptor 2A in enteric neurons.

PubMed

Zhao, Peishen; Canals, Meritxell; Murphy, Jane E; Klingler, Diana; Eriksson, Emily M; Pelayo, Juan-Carlos; Hardt, Markus; Bunnett, Nigel W; Poole, Daniel P

2013-09-06

Somatostatin (SST) 14 and SST 28 activate somatostatin 2A receptors (SSTR2A) on enteric neurons to control gut functions. SST analogs are treatments of neuroendocrine and bleeding disorders, cancer, and diarrhea, with gastrointestinal side effects of constipation, abdominal pain, and nausea. How endogenous agonists and drugs differentially regulate neuronal SSTR2A is unexplored. We evaluated SSTR2A trafficking in murine myenteric neurons and neuroendocrine AtT-20 cells by microscopy and determined whether agonist degradation by endosomal endothelin-converting enzyme 1 (ECE-1) controls SSTR2A trafficking and association with β-arrestins, key regulators of receptors. SST-14, SST-28, and peptide analogs (octreotide, lanreotide, and vapreotide) stimulated clathrin- and dynamin-mediated internalization of SSTR2A, which colocalized with ECE-1 in endosomes and the Golgi. After incubation with SST-14, SSTR2A recycled to the plasma membrane, which required active ECE-1 and an intact Golgi. SSTR2A activated by SST-28, octreotide, lanreotide, or vapreotide was retained within the Golgi and did not recycle. Although ECE-1 rapidly degraded SST-14, SST-28 was resistant to degradation, and ECE-1 did not degrade SST analogs. SST-14 and SST-28 induced transient interactions between SSTR2A and β-arrestins that were stabilized by an ECE-1 inhibitor. Octreotide induced sustained SSTR2A/β-arrestin interactions that were not regulated by ECE-1. Thus, when activated by SST-14, SSTR2A internalizes and recycles via the Golgi, which requires ECE-1 degradation of SST-14 and receptor dissociation from β-arrestins. After activation by ECE-1-resistant SST-28 and analogs, SSTR2A remains in endosomes because of sustained β-arrestin interactions. Therapeutic SST analogs are ECE-1-resistant and retain SSTR2A in endosomes, which may explain their long-lasting actions.

Agonist-biased Trafficking of Somatostatin Receptor 2A in Enteric Neurons*

PubMed Central

Zhao, Peishen; Canals, Meritxell; Murphy, Jane E.; Klingler, Diana; Eriksson, Emily M.; Pelayo, Juan-Carlos; Hardt, Markus; Bunnett, Nigel W.; Poole, Daniel P.

2013-01-01

Somatostatin (SST) 14 and SST 28 activate somatostatin 2A receptors (SSTR2A) on enteric neurons to control gut functions. SST analogs are treatments of neuroendocrine and bleeding disorders, cancer, and diarrhea, with gastrointestinal side effects of constipation, abdominal pain, and nausea. How endogenous agonists and drugs differentially regulate neuronal SSTR2A is unexplored. We evaluated SSTR2A trafficking in murine myenteric neurons and neuroendocrine AtT-20 cells by microscopy and determined whether agonist degradation by endosomal endothelin-converting enzyme 1 (ECE-1) controls SSTR2A trafficking and association with β-arrestins, key regulators of receptors. SST-14, SST-28, and peptide analogs (octreotide, lanreotide, and vapreotide) stimulated clathrin- and dynamin-mediated internalization of SSTR2A, which colocalized with ECE-1 in endosomes and the Golgi. After incubation with SST-14, SSTR2A recycled to the plasma membrane, which required active ECE-1 and an intact Golgi. SSTR2A activated by SST-28, octreotide, lanreotide, or vapreotide was retained within the Golgi and did not recycle. Although ECE-1 rapidly degraded SST-14, SST-28 was resistant to degradation, and ECE-1 did not degrade SST analogs. SST-14 and SST-28 induced transient interactions between SSTR2A and β-arrestins that were stabilized by an ECE-1 inhibitor. Octreotide induced sustained SSTR2A/β-arrestin interactions that were not regulated by ECE-1. Thus, when activated by SST-14, SSTR2A internalizes and recycles via the Golgi, which requires ECE-1 degradation of SST-14 and receptor dissociation from β-arrestins. After activation by ECE-1-resistant SST-28 and analogs, SSTR2A remains in endosomes because of sustained β-arrestin interactions. Therapeutic SST analogs are ECE-1-resistant and retain SSTR2A in endosomes, which may explain their long-lasting actions. PMID:23913690

Peptide receptor targeting in cancer: the somatostatin paradigm.

PubMed

Barbieri, Federica; Bajetto, Adriana; Pattarozzi, Alessandra; Gatti, Monica; Würth, Roberto; Thellung, Stefano; Corsaro, Alessandro; Villa, Valentina; Nizzari, Mario; Florio, Tullio

2013-01-01

Peptide receptors involved in pathophysiological processes represent promising therapeutic targets. Neuropeptide somatostatin (SST) is produced by specialized cells in a large number of human organs and tissues. SST primarily acts as inhibitor of endocrine and exocrine secretion via the activation of five G-protein-coupled receptors, named sst1-5, while in central nervous system, SST acts as a neurotransmitter/neuromodulator, regulating locomotory and cognitive functions. Critical points of SST/SST receptor biology, such as signaling pathways of individual receptor subtypes, homo- and heterodimerization, trafficking, and cross-talk with growth factor receptors, have been extensively studied, although functions associated with several pathological conditions, including cancer, are still not completely unraveled. Importantly, SST exerts antiproliferative and antiangiogenic effects on cancer cells in vitro, and on experimental tumors in vivo. Moreover, SST agonists are clinically effective as antitumor agents for pituitary adenomas and gastro-pancreatic neuroendocrine tumors. However, SST receptors being expressed by tumor cells of various tumor histotypes, their pharmacological use is potentially extendible to other cancer types, although to date no significant results have been obtained. In this paper the most recent findings on the expression and functional roles of SST and SST receptors in tumor cells are discussed.

SMOS salinity retrieval by using Support Vector Regression (SVR)

NASA Astrophysics Data System (ADS)

Katagis, Thomas; Fernández-Prieto, Diego; Marconcini, Mattia; Sabia, Roberto; Martinez, Justino

2013-04-01

The Soil Moisture and Ocean Salinity (SMOS) mission was launched in November 2009 within the framework of the European Space Agency (ESA) Living Planet programme. Over the oceans, it aims at providing Sea Surface Salinity (SSS) maps with spatial and temporal coverage adequate for large scale oceanography. A comprehensive inversion scheme has been defined and implemented in the operational retrieval chain to allow proper SSS estimates in a single satellite overpass (L2 product) from the multi-angular brightness temperatures (TBs) measured by SMOS. Such SMOS operational L2 salinity processor minimizes the difference between the measured and modeled TBs, including additional constraints on Sea Surface Temperature (SST) and wind speed auxiliary fields. In particular, by adopting a maximum-likelihood Bayesian approach, the inversion scheme retrieves salinity under an iterative convergence loop. However, despite the implemented iterative technique is well established and robust, it is still prone to limitations; for instance, the presence of local minima in the cost function cannot be excluded. Moreover, previous studies have demonstrated that the background and observational terms of the cost function are not properly balanced and this is likely to introduce errors in the retrieval procedure. In order to overcome such potential drawbacks, in this study it is proposed a novel approach for the SSS estimation based on the ɛ-insensitive Support Vector Regression (SVR), where both SMOS L1 measurements and auxiliary parameters are used as input. The SVR technique already proved capable of high generalization and robustness in a variety of different applications, with a limited complexity in handling the learning phase. Notably, instead of minimizing the observed training error, it attempts to minimize the generalization error bound so as to achieve generalized performance. For this purpose, the original input domain is mapped into a higher dimensionality space (where the function underlying the data is supposed to have increased flatness) and linear regression is performed. The SVR training is performed using suitable in situ SSS data (i.e., ARGO buoys data) collected in a representative region of the ocean. So far, in situ data coming from a match-up ARGO database in November 2010 over the South Pacific constitute the preliminary benchmark of the study. Ongoing activities point at extending this spatial and temporal frame to assess the robustness of the method. The in situ data have been collocated with SMOS TB measurements and additional parameters (e.g., SST and wind speed) in the learning phase of the SVR under various training/testing configurations. Afterwards, the SSS regression has been performed out of the SMOS TBs or emissivities. Estimated SVR salinity fields are in general (very) well correlated with ARGO data. The analysis of the different impact of the various features has been performed once a rigorous data filtering/flagging is applied, and misfit (SSSSVR-SSSARGO) statistics have been computed. For assessing the effectiveness of the proposed method, final results will be compared to those obtained using the official SMOS SSS retrieval algorithm.

A Deletion in the Canine POMC Gene Is Associated with Weight and Appetite in Obesity-Prone Labrador Retriever Dogs.

PubMed

Raffan, Eleanor; Dennis, Rowena J; O'Donovan, Conor J; Becker, Julia M; Scott, Robert A; Smith, Stephen P; Withers, David J; Wood, Claire J; Conci, Elena; Clements, Dylan N; Summers, Kim M; German, Alexander J; Mellersh, Cathryn S; Arendt, Maja L; Iyemere, Valentine P; Withers, Elaine; Söder, Josefin; Wernersson, Sara; Andersson, Göran; Lindblad-Toh, Kerstin; Yeo, Giles S H; O'Rahilly, Stephen

2016-05-10

Sequencing of candidate genes for obesity in Labrador retriever dogs identified a 14 bp deletion in pro-opiomelanocortin (POMC) with an allele frequency of 12%. The deletion disrupts the β-MSH and β-endorphin coding sequences and is associated with body weight (per allele effect of 0.33 SD), adiposity, and greater food motivation. Among other dog breeds, the deletion was only found in the closely related flat-coat retriever (FCR), where it is similarly associated with body weight and food motivation. The mutation is significantly more common in Labrador retrievers selected to become assistance dogs than pets. In conclusion, the deletion in POMC is a significant modifier of weight and appetite in Labrador retrievers and FCRs and may influence other behavioral traits. Copyright © 2016 The Authors. Published by Elsevier Inc. All rights reserved.

The Role of SST and Large-Scale Dynamical Motions on the Onset and Shutdown of the Super Greenhouse Effect

NASA Astrophysics Data System (ADS)

O'Brien, T. A.; Kashinath, K.; Collins, W.

2015-12-01

Over warm tropical oceans the increase in greenhouse trapping with increasing SST is faster than that of the surface emission, resulting in a decrease in outgoing longwave radiation at the top of the atmosphere (OLR) when SST increases, also known as the super greenhouse effect (SGE). If SGE is directly linked to SST changes, there are profound implications for positive climate feedbacks in the tropics. However, a number of studies in the last 20 years have provided compelling evidence that the OLR-SST relationship is coincidental rather than causal. These studies suggested that the onset of SGE is dominated by the large-scale dynamics, and that the apparent OLR-SST relationships disappear when individual large-scale regimes are considered. We show that these conclusions are contingent on the quality of the datasets used in the analysis, and that modern satellite observations and reanalyses support a strong relationship between SGE and SST. We find that the SGE occurs across all dynamical regimes, suggesting that this may be related primarily to SST rather than large-scale dynamics. We also find that the discontinuity in the relationship between OLR and SST at high SST (29.5 C), i.e. the shutdown of SGE, also occurs across almost all dynamical regimes, suggesting that this behavior may also be strongly linked to SST. Collectively, these results suggest that the SGE may actually be controlled by SST. Work is ongoing to understand the robustness of this new result to other datasets, to understand whether SST is truly the controlling variable, and to understand the mechanism by which OLR could decrease with increasing SST even under strongly subsiding conditions.

Truncated somatostatin receptor 5 may modulate therapy response to somatostatin analogues--Observations in two patients with acromegaly and severe headache.

PubMed

Marina, Djordje; Burman, Pia; Klose, Marianne; Casar-Borota, Olivera; Luque, Raúl M; Castaño, Justo P; Feldt-Rasmussen, Ulla

2015-10-01

Somatotropinomas have unique "fingerprints" of somatostatin receptor (sst) expression, which are targets in treatment of acromegaly with somatostatin analogues (SSAs). However, a significant expression of sst is not always related to the biochemical response to SSAs. Headache is a common complaint in acromegaly and considered a clinical marker of disease activity. SSAs are reported to have an own analgesic effect, but the sst involved are unknown. We investigated sst expression in two acromegalic patients with severe headache and no biochemical effects of octreotide, but a good response to pasireotide. We searched the literature for determinants of biochemical and analgesic effects of SSAs in somatotropinomas. Case 1 had no biochemical or analgesic effects of octreotide, a semi-selective SSA, but a rapid and significant effect of pasireotide, a pan-SSA. Case 2 demonstrated discordance between analgesic and biochemical effects of octreotide, in that headache disappeared, but without biochemical improvement. In contrast, pasireotide normalized insulin-like growth factor 1. Both adenomas were sparsely granulated and had strong membranous expressions of sst2a in 50-75% and sst5 in 75-100% of tumor cells. The truncated sst5 variant TMD4 (sst5TMD4) showed expression in 20-57% of tumor cells. A poor biochemical response to octreotide may be associated with tumor expression of a truncated sst5 variant, despite abundant sst2a expression, suggesting an influence from variant sst5 on common sst signaling pathways. Furthermore, unrelated analgesic and biochemical effects of SSAs supported a complex pathogenesis of acromegaly-associated headache. Finally, assessment of truncated sst5 in addition to full length sst could be important for a choice of postoperative SSA treatment in somatotropinomas. Copyright © 2015 Elsevier Ltd. All rights reserved.

North American Tropical Cyclone Landfall and SST: A Statistical Model Study

NASA Technical Reports Server (NTRS)

Hall, Timothy; Yonekura, Emmi

2013-01-01

A statistical-stochastic model of the complete life cycle of North Atlantic (NA) tropical cyclones (TCs) is used to examine the relationship between climate and landfall rates along the North American Atlantic and Gulf Coasts. The model draws on archived data of TCs throughout the North Atlantic to estimate landfall rates at high geographic resolution as a function of the ENSO state and one of two different measures of sea surface temperature (SST): 1) SST averaged over the NA subtropics and the hurricane season and 2) this SST relative to the seasonal global subtropical mean SST (termed relSST). Here, the authors focus on SST by holding ENSO to a neutral state. Jackknife uncertainty tests are employed to test the significance of SST and relSST landfall relationships. There are more TC and major hurricane landfalls overall in warm years than cold, using either SST or relSST, primarily due to a basinwide increase in the number of storms. The signal along the coast, however, is complex. Some regions have large and significant sensitivity (e.g., an approximate doubling of annual major hurricane landfall probability on Texas from -2 to +2 standard deviations in relSST), while other regions have no significant sensitivity (e.g., the U.S. mid-Atlantic and Northeast coasts). This geographic structure is due to both shifts in the regions of primary TC genesis and shifts in TC propagation.

Observations of the Earth's Radiation Budget in relation to atmospheric hydrology. 4: Atmospheric column radiative cooling over the world's oceans

NASA Technical Reports Server (NTRS)

Stephens, Graeme L.; Slingo, Anthony; Webb, Mark J.; Minnett, Peter J.; Daum, Peter H.; Kleinman, Lawrence; Wittmeyer, Ian; Randall, David A.

1994-01-01

This paper introduces a simple method for deriving climatological values of the longwave flux emitted from the clear sky atmosphere to the ice-free ocean surface. It is shown using both theory and data from simulations how the ratio of the surface to top-of-atmosphere (TOA) flux is a simple function of water vapor (W) and a validation of the simple relationship is presented based on a limited set of surface flux measurements. The rms difference between the retrieved surface fluxes and the simulated surface fluxes is approximately 6 W/sq m. The clear sky column cooling rate of the atmosphere is derived from the Earth Radiation Budget Experiment (ERBE) values of the clear sky TOA flux and the surface flux retrieved using Special Scanning Microwave Imager (SSM/I) measurements of w together with ERBE clear sky fluxes. The relationship between this column cooling rate, w, and the sea surface temperature (SST) is explored and it is shown how the cooling rate systematically increases as both w and SST increase. The uncertainty implied in these estmates of cooling are approximately +/- 0.2 K/d. The effects of clouds on this longwave cooling are also explored by placing bounds on the possible impact of clouds on the column cooling rate based on certain assumptions about the effect of clouds on the longwave flux to the surface. It is shown how the longwave effects of clouds in a moist atmosphere where the column water vapor exceeds approximately 30 kg/sq m may be estimated from presently available satellite data with an uncertainty estimated to be approximately 0.2 K/d. Based on an approach described in this paper, we show how clouds in these relatively moist regions decrease the column cooling by almost 50% of the clear sky values and the existence of significant longitudinal gradients in column radiative heating across the equatorial and subtropical Pacific Ocean.

Sensitivity of Spacebased Microwave Radiometer Observations to Ocean Surface Evaporation

NASA Technical Reports Server (NTRS)

Liu, Timothy W.; Li, Li

2000-01-01

Ocean surface evaporation and the latent heat it carries are the major components of the hydrologic and thermal forcing on the global oceans. However, there is practically no direct in situ measurements. Evaporation estimated from bulk parameterization methods depends on the quality and distribution of volunteer-ship reports which are far less than satisfactory. The only way to monitor evaporation with sufficient temporal and spatial resolutions to study global environment changes is by spaceborne sensors. The estimation of seasonal-to-interannual variation of ocean evaporation, using spacebased measurements of wind speed, sea surface temperature (SST), and integrated water vapor, through bulk parameterization method,s was achieved with reasonable success over most of the global ocean, in the past decade. Because all the three geophysical parameters can be retrieved from the radiance at the frequencies measured by the Scanning Multichannel Microwave Radiometer (SMMR) on Nimbus-7, the feasibility of retrieving evaporation directly from the measured radiance was suggested and demonstrated using coincident brightness temperatures observed by SMMR and latent heat flux computed from ship data, in the monthly time scale. However, the operational microwave radiometers that followed SMMR, the Special Sensor Microwave/Imager (SSM/I), lack the low frequency channels which are sensitive to SST. This low frequency channels are again included in the microwave imager (TMI) of the recently launched Tropical Rain Measuring Mission (TRMM). The radiance at the frequencies observed by both TMI and SSM/I were simulated through an atmospheric radiative transfer model using ocean surface parameters and atmospheric temperature and humidity profiles produced by the reanalysis of the European Center for Medium Range Weather Forecast (ECMWF). From the same ECMWF data set, coincident evaporation is computed using a surface layer turbulent transfer model. The sensitivity of the radiance to evaporation over various seasons and geographic locations are examined. The microwave frequencies with radiance that are significant correlated with evaporation are identify and capability of estimating evaporation directly from TMI will be discussed.

Selective agonists of somatostatin receptor subtype 1 or 2 injected peripherally induce antihyperalgesic effect in two models of visceral hypersensitivity in mice

PubMed Central

Mulak, Agata; Larauche, Muriel; Biraud, Mandy; Million, Mulugeta; Rivier, Jean; Taché, Yvette

2014-01-01

Somatostatin interacts with 5 G-protein-coupled receptor (sst1–5). Octreotide, a stable sst2≫3≥5 agonist, octreotide, exerts a visceral anti-hyperalgesic effect in experimental and clinical studies. Little is known on the receptor subtypes involved. We investigated the influence of the stable sst1–5 agonist, ODT8-SST and selective receptor subtype peptide agonists (3 or 10 μg/mouse) injected intraperitoneally (ip) on visceral hypersensitivity in mice induced by repeated noxious colorectal distensions (4 sets of 3 CRD, each at 55 mmHg) or corticotropin-releasing factor receptor 1 agonist, cortagine given between 2 sets of graded CRD (15, 30, 45, and 60 mmHg, 3 times each pressure). The mean visceromotor response (VMR) was assessed using a non-invasive manometry method and values were expressed as percentage of the VMR to the 1st set of CRD baseline or to the 60 mmHg CRD, respectively. ODT8-SST (10 μg) and the sst2 agonist, S-346-011 (3 and 10 μg) prevented mechanically-induced visceral hypersensitivity in the 3 sets of CRD, the sst1 agonist (10 μg) blocked only the 2nd set and showed a trend at 3 μg while the sst4 agonist had no effect. The selective sst2 antagonist, S-406-028 blocked the sst2 agonist but not the sst1 agonist effect. The sst1 agonist (3 and 10 μg) prevented cortagine-induced hypersensitivity to CRD at each pressure while the sst2 agonist at 10 μg reduced it. These data indicate that in addition to sst2, the sst1 agonist may provide a novel promising target to alleviate visceral hypersensitivity induced by mechanoreceptor sensitization and more prominently, stress-related visceral nociceptive sensitization. PMID:25451334

Selective agonists of somatostatin receptor subtype 1 or 2 injected peripherally induce antihyperalgesic effect in two models of visceral hypersensitivity in mice.

PubMed

Mulak, Agata; Larauche, Muriel; Biraud, Mandy; Million, Mulugeta; Rivier, Jean; Taché, Yvette

2015-01-01

Somatostatin interacts with five G-protein-coupled receptor (sst1-5). Octreotide, a stable sst2≫3≥5 agonist, exerts a visceral anti-hyperalgesic effect in experimental and clinical studies. Little is known on the receptor subtypes involved. We investigated the influence of the stable sst1-5 agonist, ODT8-SST and selective receptor subtype peptide agonists (3 or 10μg/mouse) injected intraperitoneally (ip) on visceral hypersensitivity in mice induced by repeated noxious colorectal distensions (four sets of three CRD, each at 55mmHg) or corticotropin-releasing factor receptor 1 agonist, cortagine given between two sets of graded CRD (15, 30, 45, and 60mmHg, three times each pressure). The mean visceromotor response (VMR) was assessed using a non-invasive manometry method and values were expressed as percentage of the VMR to the 1st set of CRD baseline or to the 60mmHg CRD, respectively. ODT8-SST (10μg) and the sst2 agonist, S-346-011 (3 and 10μg) prevented mechanically induced visceral hypersensitivity in the three sets of CRD, the sst1 agonist (10μg) blocked only the 2nd set and showed a trend at 3μg while the sst4 agonist had no effect. The selective sst2 antagonist, S-406-028 blocked the sst2 agonist but not the sst1 agonist effect. The sst1 agonist (3 and 10μg) prevented cortagine-induced hypersensitivity to CRD at each pressure while the sst2 agonist at 10μg reduced it. These data indicate that in addition to sst2, the sst1 agonist may provide a novel promising target to alleviate visceral hypersensitivity induced by mechanoreceptor sensitization and more prominently, stress-related visceral nociceptive sensitization. Copyright © 2014 Elsevier Inc. All rights reserved.

On the influence of simulated SST warming on rainfall projections in the Indo-Pacific domain: an AGCM study

NASA Astrophysics Data System (ADS)

Zhang, Huqiang; Zhao, Y.; Moise, A.; Ye, H.; Colman, R.; Roff, G.; Zhao, M.

2018-02-01

Significant uncertainty exists in regional climate change projections, particularly for rainfall and other hydro-climate variables. In this study, we conduct a series of Atmospheric General Circulation Model (AGCM) experiments with different future sea surface temperature (SST) warming simulated by a range of coupled climate models. They allow us to assess the extent to which uncertainty from current coupled climate model rainfall projections can be attributed to their simulated SST warming. Nine CMIP5 model-simulated global SST warming anomalies have been super-imposed onto the current SSTs simulated by the Australian climate model ACCESS1.3. The ACCESS1.3 SST-forced experiments closely reproduce rainfall means and interannual variations as in its own fully coupled experiments. Although different global SST warming intensities explain well the inter-model difference in global mean precipitation changes, at regional scales the SST influence vary significantly. SST warming explains about 20-25% of the patterns of precipitation changes in each of the four/five models in its rainfall projections over the oceans in the Indo-Pacific domain, but there are also a couple of models in which different SST warming explains little of their precipitation pattern changes. The influence is weaker again for rainfall changes over land. Roughly similar levels of contribution can be attributed to different atmospheric responses to SST warming in these models. The weak SST influence in our study could be due to the experimental setup applied: superimposing different SST warming anomalies onto the same SSTs simulated for current climate by ACCESS1.3 rather than directly using model-simulated past and future SSTs. Similar modelling and analysis from other modelling groups with more carefully designed experiments are needed to tease out uncertainties caused by different SST warming patterns, different SST mean biases and different model physical/dynamical responses to the same underlying SST forcing.

F/FB-111 Avionics Test Station and Component Specialist/Technician. Automatic Test Stations Manual and Electronic Warfare Test Stations. Training Requirements Analysis (451X6). Volume 2

DTIC Science & Technology

1991-11-01

F-111D RADAR SST TASK NOTES: SST IS LOCATED ONLY AT CANNON AFB, NM. IT CONSISTS OF AN MRU , EPU, LVPS, MFG, DDPU, ARS RACK, AND TRANSMITTER. THE SST...VOTES: SST IS LOCATED ONLY AT CANNON AFB, NM. IT CONSISTS OF AN MRU , EPU, LVPS, MFG, DDPU, ARS RACK, AND TRANSMITTER. THE SST WILL BE REPLACED BY DTS...NOTES: SST IS LOCATED ONLY AT CANNON AFB, NM. IT CONSISTS OF AN MRU , EPU, LVPS, MFG, DDPU, ARS RACK, AND TRANSMITTER. THE SST WILL BE REPLACED BY DTS

Cogeneration steam turbines from Siemens: New solutions

NASA Astrophysics Data System (ADS)

Kasilov, V. F.; Kholodkov, S. V.

2017-03-01

The Enhanced Platform system intended for the design and manufacture of Siemens AG turbines is presented. It combines organizational and production measures allowing the production of various types of steam-turbine units with a power of up to 250 MWel from standard components. The Enhanced Platform designs feature higher efficiency, improved reliability, better flexibility, longer overhaul intervals, and lower production costs. The design features of SST-700 and SST-900 steam turbines are outlined. The SST-700 turbine is used in backpressure steam-turbine units (STU) or as a high-pressure cylinder in a two-cylinder condensing turbine with steam reheat. The design of an SST-700 single-cylinder turbine with a casing without horizontal split featuring better flexibility of the turbine unit is presented. An SST-900 turbine can be used as a combined IP and LP cylinder (IPLPC) in steam-turbine or combined-cycle power units with steam reheat. The arrangements of a turbine unit based on a combination of SST-700 and SST-900 turbines or SST-500 and SST-800 turbines are presented. Examples of this combination include, respectively, PGU-410 combinedcycle units (CCU) with a condensing turbine and PGU-420 CCUs with a cogeneration turbine. The main equipment items of a PGU-410 CCU comprise an SGT5-4000F gas-turbine unit (GTU) and STU consisting of SST-700 and SST-900RH steam turbines. The steam-turbine section of a PGU-420 cogeneration power unit has a single-shaft turbine unit with two SST-800 turbines and one SST-500 turbine giving a power output of N el. STU = 150 MW under condensing conditions.

A Fuzzy Control System for Reducing Urban Runoff by a Stormwater Storage Tank

NASA Astrophysics Data System (ADS)

Zhang, P.; Cai, Y.; Wang, J.

2017-12-01

Stormwater storage tank (SST) is a popular low impact development technology for reducing stormwater runoff in the construction of sponge city. Most researches on SST were mainly the design, pollutants removal effect, and operation assessment. While there were few researches on the automatic control of SST for reducing peak flow. In this paper, fuzzy control was introduced into the peak control of SST to improve the efficiency of reducing stormawter runoff. Firstly, the design of SST was investigated. A catchment area and return period were assumed, a SST model was manufactured, and then the storage capacity of the SST was verified. Secondly, the control parameters of the SST based on reducing stormwater runoff was analyzed, and a schematic diagram of real-time control (RTC) system based on peak control SST was established. Finally, fuzzy control system of a double input (flow and water level) and double output (inlet and outlet valve) was designed. The results showed that 1) under the different return periods (one year, three years, five years), the SST had the effect of delayed peak control and storage by increasing the detention time, 2) rainfall, pipeline flow, the influent time and the water level in the SST could be used as RTC parameters, and 3) the response curves of flow velocity and water level fluctuated very little and reached equilibrium in a short time. The combination of online monitoring and fuzzy control was feasible to control the SST automatically. This paper provides a theoretical reference for reducing stormwater runoff and improving the operation efficiency of SST.

Registration methods for nonblind watermark detection in digital cinema applications

NASA Astrophysics Data System (ADS)

Nguyen, Philippe; Balter, Raphaele; Montfort, Nicolas; Baudry, Severine

2003-06-01

Digital watermarking may be used to enforce copyright protection of digital cinema, by embedding in each projected movie an unique identifier (fingerprint). By identifying the source of illegal copies, watermarking will thus incite movie theatre managers to enforce copyright protection, in particular by preventing people from coming in with a handy cam. We propose here a non-blind watermark method to improve the watermark detection on very impaired sequences. We first present a study on the picture impairments caused by the projection on a screen, then acquisition with a handy cam. We show that images undergo geometric deformations, which are fully described by a projective geometry model. The sequence also undergoes spatial and temporal luminance variation. Based on this study and on the impairments models which follow, we propose a method to match the retrieved sequence to the original one. First, temporal registration is performed by comparing the average luminance variation on both sequences. To compensate for geometric transformations, we used paired points from both sequences, obtained by applying a feature points detector. The matching of the feature points then enables to retrieve the geometric transform parameters. Tests show that the watermark retrieval on rectified sequences is greatly improved.

Are Sea Surface Temperature satellite measurements reliable proxies of lagoon temperature in the South Pacific?

NASA Astrophysics Data System (ADS)

Van Wynsberge, Simon; Menkes, Christophe; Le Gendre, Romain; Passfield, Teuru; Andréfouët, Serge

2017-12-01

In remote coral reef environments, lagoon and reef in situ measurements of temperature are scarce. Sea Surface Temperature (SST) measured by satellite has been frequently used as a proxy of the lagoon temperature experienced by coral reef organisms (TL) especially during coral bleaching events. However, the link between SST and TL is poorly characterized. First, we compared the correlation between various SST series and TL from 2012 to 2016 in three atolls and one island in the Central South Pacific Ocean. Simple linear correlation between SST and TL ranged between 0.44 and 0.97 depending on lagoons, localities of sensors, and type of SST data. High-resolution-satellite-measurements of SST inside the lagoons did not outperform oceanic SST series, suggesting that SST products are not adapted for small lagoons. Second, we modelled the difference between oceanic SST and TL as a function of the drivers of lagoon water renewal and mixing, namely waves, tide, wind, and season. The multivariate models reduced significantly the bias between oceanic SST and TL. In atoll lagoons, and probably in other hydrodynamically semi-open systems, a correction taking into account these factors is necessary when SST are used to characterize organisms' thermal stress thresholds.

Somatostatin, neuronal vulnerability and behavioral emotionality.

PubMed

Lin, L C; Sibille, E

2015-03-01

Somatostatin (SST) deficits are common pathological features in depression and other neurological disorders with mood disturbances, but little is known about the contribution of SST deficits to mood symptoms or causes of these deficits. Here we show that mice lacking SST (Sst(KO)) exhibit elevated behavioral emotionality, high basal plasma corticosterone and reduced gene expression of Bdnf, Cortistatin and Gad67, together recapitulating behavioral, neuroendocrine and molecular features of human depression. Studies in Sst(KO) and heterozygous (Sst(HZ)) mice show that elevated corticosterone is not sufficient to reproduce the behavioral phenotype, suggesting a putative role for Sst cell-specific molecular changes. Using laser capture microdissection, we show that cortical SST-positive interneurons display significantly greater transcriptome deregulations after chronic stress compared with pyramidal neurons. Protein translation through eukaryotic initiation factor 2 (EIF2) signaling, a pathway previously implicated in neurodegenerative diseases, was most affected and suppressed in stress-exposed SST neurons. We then show that activating EIF2 signaling through EIF2 kinase inhibition mitigated stress-induced behavioral emotionality in mice. Taken together, our data suggest that (1) low SST has a causal role in mood-related phenotypes, (2) deregulated EIF2-mediated protein translation may represent a mechanism for vulnerability of SST neurons and (3) that global EIF2 signaling has antidepressant/anxiolytic potential.

Somatostatin, neuronal vulnerability and behavioral emotionality

PubMed Central

Lin, LC; Sibille, E

2014-01-01

Somatostatin (SST) deficits are common pathological features in depression and other neurological disorders with mood disturbances, but little is known about the contribution of SST deficits to mood symptoms or causes of these deficits. Here we show that mice lacking Sst (SstKO) exhibit elevated behavioral emotionality, high basal plasma corticosterone and reduced gene expression of Bdnf, Cortistatin, and Gad67, together recapitulating behavioral, neuroendocrine and molecular features of human depression. Studies in SstKO and heterozygous (SstHZ) mice show that elevated corticosterone is not sufficient to reproduce the behavioral phenotype, suggesting a putative role for Sst cell-specific molecular changes. Using laser-capture microdissection, we show that cortical SST-positive interneurons display significantly greater transcriptome deregulations after chronic stress compared to pyramidal neurons. Protein translation through eukaryotic initiation factor 2 (EIF2) signaling, a pathway previously implicated in neurodegenerative diseases, was most affected and suppressed in stress-exposed SST neurons. We then show that activating EIF2 signaling through EIF2 kinase inhibition mitigated stress-induced behavioral emotionality in mice. Together, our data suggest that (1) low SST plays a causal role in mood-related phenotypes, (2) deregulated EIF2-mediated protein translation may represent a mechanism for vulnerability of SST neurons, and (3) that global EIF2 signaling has antidepressant/anxiolytic potential. PMID:25600109

Variability in Bias of Gridded Sea Surface Temperature Data Products: Implications for Seasonally Resolved Marine Proxy Reconstructions

NASA Astrophysics Data System (ADS)

Ouellette, G., Jr.; DeLong, K. L.

2016-12-01

Seasonally resolved reconstructions of sea surface temperature (SST) are commonly produced using isotopic ratios and trace elemental ratios within the skeletal material of marine organisms such as corals, coralline algae, and mollusks. Using these geochemical proxies to produce paleoclimate reconstructions requires using regression methods to calibrate the proxy to observed SST, ideally with in situ SST records that span many years. Unfortunately, the few locations with in situ SST records rarely coincide with the time span of the marine proxy archive. Therefore, SST data products are often used for calibration and they are based on MOHSST or ICOADS SST observations as their main SST source but use different algorithms to produce globally gridded data products. These products include the Hadley Center's HADSST (5º) and interpolated HADISST (1º), NOAA's extended reconstructed SST (ERSST; 2º), optimum interpolation SST (OISST; 1º), and the Kaplan SST (5º). This study assessed the potential bias in these data products at marine archive sites throughout the tropical Atlantic using in situ SST where it was available, and a high-resolution (4 km) satellite-based SST data product from NOAA Pathfinder that has been shown to closely reflect in situ SST for our locations. Bias was assessed at each site, and then within each data product across the region for spatial homogeneity. Our results reveal seasonal biases in all data products, but not for all locations and not of a uniform magnitude or season among products. We found the largest differences in mean SST on the order of 1-3°C for single sites in the Gulf of Mexico, and differences for regional mean SST bias were 0.5-1°C when sites in the Gulf of Mexico were compared to sites in the Caribbean Sea within the same data product. No one SST data product outperformed the others and no systematic bias was found. This analysis illustrates regional strengths and weaknesses of these data products, and serves as a cautionary note against the wholesale use of a particular gridded data product for marine proxy calibration, whether for a single site or larger regional reconstruction, without considering the inherent heterogeneous bias present in each data product that we show varies among locations. Furthermore, this study has implications for comparing climate models and these SST data products.

The first experiments in SST-1

NASA Astrophysics Data System (ADS)

Pradhan, S.; Khan, Z.; Tanna, V. L.; Sharma, A. N.; Doshi, K. J.; Prasad, U.; Masand, H.; Kumar, Aveg; Patel, K. B.; Bhandarkar, M. K.; Dhongde, J. R.; Shukla, B. K.; Mansuri, I. A.; Varadarajulu, A.; Khristi, Y. S.; Biswas, P.; Gupta, C. N.; Sharma, D. K.; Raval, D. C.; Srinivasan, R.; Pandya, S. P.; Atrey, P. K.; Sharma, P. K.; Patel, P. J.; Patel, H. S.; Santra, P.; Parekh, T. J.; Dhanani, K. R.; Paravastu, Y.; Pathan, F. S.; Chauhan, P. K.; Khan, M. S.; Tank, J. K.; Panchal, P. N.; Panchal, R. N.; Patel, R. J.; George, S.; Semwal, P.; Gupta, P.; Mahesuriya, G. I.; Sonara, D. P.; Jayswal, S. P.; Sharma, M.; Patel, J. C.; Varmora, P. P.; Patel, D. J.; Srikanth, G. L. N.; Christian, D. R.; Garg, A.; Bairagi, N.; Babu, G. R.; Panchal, A. G.; Vora, M. M.; Singh, A. K.; Sharma, R.; Raju, D.; Kulkarni, S. V.; Kumar, M.; Manchanda, R.; Joisa, S.; Tahiliani, K.; Pathak, S. K.; Patel, K. M.; Nimavat, H. D.; Shah, P. R.; Chudasma, H. H.; Raval, T. Y.; Sharma, A. L.; Ojha, A.; Parghi, B. R.; Banaudha, M.; Makwana, A. R.; Chowdhuri, M. B.; Ramaiya, N.; kumar, A.; Raval, J. V.; Gupta, S.; Purohit, S.; Kaur, R.; Adhiya, A. N.; Jha, R.; Kumar, S.; Nagora, U. C.; Siju, V.; Thomas, J.; Chaudhari, V. R.; Patel, K. G.; Ambulkar, K. K.; Dalakoti, S.; Virani, C. G.; Parmar, P. R.; Thakur, A. L.; Das, A.; Bora, D.; the SST-1 Team

2015-10-01

A steady state superconducting tokamak (SST-1) has been commissioned after the successful experimental and engineering validations of its critical sub-systems. During the ‘engineering validation phase’ of SST-1; the cryostat was demonstrated to be leak-tight in all operational scenarios, 80 K thermal shields were demonstrated to be uniformly cooled without regions of ‘thermal runaway and hot spots’, the superconducting toroidal field magnets were demonstrated to be cooled to their nominal operational conditions and charged up to 1.5 T of the field at the major radius. The engineering validations further demonstrated the assembled SST-1 machine shell to be a graded, stress-strain optimized and distributed thermo-mechanical device, apart from the integrated vacuum vessel being validated to be UHV compatible etc. Subsequently, ‘field error components’ in SST-1 were measured to be acceptable towards plasma discharges. A successful breakdown in SST-1 was obtained in SST-1 in June 2013 assisted with electron cyclotron pre-ionization in the second harmonic mode, thus marking the ‘first plasma’ in SST-1 and the arrival of SST-1 into the league of contemporary steady state devices. Subsequent to the first plasma, successful repeatable plasma start-ups with E ˜ 0.4 V m-1, and plasma current in excess of 70 kA for 400 ms assisted with electron cyclotron heating pre-ionization at a field of 1.5 T have so far been achieved in SST-1. Lengthening the plasma pulse duration with lower hybrid current drive, confinement and transport in SST-1 plasmas and magnetohydrodynamic activities typical to large aspect ratio SST-1 discharges are presently being investigated in SST-1. In parallel, SST-1 has uniquely demonstrated reliable cryo-stable high field operation of superconducting TF magnets in the two-phase cooling mode, operation of vapour-cooled current leads with cold gas instead of liquid helium and an order less dc joint resistance in superconducting magnet winding packs with high transport currents. In parallel, SST-1 is also continually getting up-graded with first wall integration, superconducting central solenoid installation and over-loaded MgB2-brass based current leads etc. Phase-1 of SST-1 up-gradation is scheduled by the first half of 2015, after which long pulse plasma experiments in both circular and elongated configurations have been planned in SST-1.

Recent Improvements in AMSR2 Ground-Based RFI Filtering

NASA Astrophysics Data System (ADS)

Scott, J. P.; Gentemann, C. L.; Wentz, F. J.

2015-12-01

Passive satellite radiometer measurements in the microwave frequencies (6-89 GHz) are useful in providing geophysical retrievals of sea surface temperature (SST), atmospheric water vapor, wind speed, rain rate, and more. However, radio frequency interference (RFI) is one of the fastest growing sources of error in these retrievals. RFI can originate from broadcasting satellites, as well as from ground-based instrumentation that makes use of the microwave range. The microwave channel bandwidths used by passive satellite radiometers are often wider than the protected bands allocated for this type of remote sensing, a common practice in microwave radiometer design used to reduce the effect of instrument noise in the observed signal. However, broad channel bandwidths allow greater opportunity for RFI to affect these observations and retrievals. For ground-based RFI, a signal is broadcast directly into the atmosphere which may interfere with the radiometer - its antenna, cold mirror, hot load or the internal workings of the radiometer itself. It is relatively easy to identify and flag RFI from large sources, but more difficult to do so from small, sporadic sources. Ground-based RFI has high spatial and temporal variability, requiring constant, automated detection and removal to avoid spurious trends leaching into the geophysical retrievals. Ascension Island in the South Atlantic Ocean has been one of these notorious ground-based RFI sources, affecting many microwave radiometers, including the AMSR2 radiometer onboard JAXA's GCOM-W1 satellite. Ascension Island RFI mainly affects AMSR2's lower frequency channels (6.9, 7.3, and 10.65 GHz) over a broad spatial region in the South Atlantic Ocean, which makes it challenging to detect and flag this RFI using conventional channel and geophysical retrieval differencing techniques. The authors have developed a new method of using the radiometer's earth counts and hot counts, for the affected channels, to detect an Ascension Island RFI event and flag the data efficiently and accurately, thereby reducing false detections and optimizing retrieval quality and data preservation.

Large-scale effects on the regulation of tropical sea surface temperature

NASA Technical Reports Server (NTRS)

Hartmann, Dennis L.; Michelsen, Marc L.

1993-01-01

The dominant terms in the surface energy budget of the tropical oceans are absorption of solar radiation and evaporative cooling. If it is assumed that relative humidity in the boundary layer remains constant, evaporative cooling will increase rapidly with sea surface temperature (SST) because of the strong temperature dependence of saturation water vapor pressure. The resulting stabilization of SST provided by evaporative cooling is sufficient to overcome positive feedback contributed by the decrease of surface net longwave cooling with increasing SST. Evaporative cooling is sensitive to small changes in boundary-layer relative humidity. Large and negative shortwave cloud forcing in the regions of highest SST are supported by the moisture convergence associated with largescale circulations. In the descending portions of these circulations the shortwave cloud forcing is suppressed. When the effect of these circulations is taken into account by spatial averaging, the area-averaged cloud forcing shows no sensitivity to area-averaged SST changes associated with the 1987 warming event in the tropical Pacific. While the shortwave cloud forcing is large and important in the convective regions, the importance of its role in regulating the average temperature of the tropics and in modulating temperature gradients within the tropics is less clear. A heuristic model of SST is used to illustrate the possible role of large-scale atmospheric circulations on SST in the tropics and the coupling between SST gradients and mean tropical SST. The intensity of large-scale circulations responds sensitivity to SST gradients and affects the mean tropical SST by supplying dry air to the planetary boundary layer. Large SST gradients generate vigorous circulations that increase evaporation and reduce the mean SST.

Changes in neuronal response to ischemia in retinas with genetic alterations of somatostatin receptor expression.

PubMed

Catalani, Elisabetta; Cervia, Davide; Martini, Davide; Bagnoli, Paola; Simonetti, Elisa; Timperio, Anna Maria; Casini, Giovanni

2007-03-01

Ischemia is a primary cause of neuronal death in retinal diseases. The repertoire of expressed transmitter receptors would determine the neurons' responses to ischemic damage, and peptidergic receptors may be involved. With a new in vitro model of the ischemic mouse retina, we investigated whether an altered expression of somatostatin receptors could modulate retinal responses to ischemia. We used retinas of somatostatin receptor 1 (sst(1)) knock out (KO) mice, where sst(2) are over-expressed and over-functional, and of sst(2) KO mice. TUNEL analysis of ischemic retinas showed a marked reduction of cell death in sst(1) KO retinas, while there were no differences between wild-type (WT) and sst(2) KO retinas. In addition, caspase-3 mRNA expression was also reduced in sst(1) KO as compared to WT retinas. An immunohistochemical analysis demonstrated that different cell populations responded differently to the ischemic insult, and that the persistence of some immunohistochemical markers was greater in sst(1) KO than in WT or in sst(2) KO retinas. In particular, rod bipolar cell survival was markedly improved in sst(1) KO retinas, while it was dramatically decreased in sst(2) KO retinas. Furthermore, consistent with a role of glutamate excitotoxicity in ischemia-induced neuronal death, retinal glutamate release was observed to increase under ischemic conditions, but this increase was significantly reduced in sst(1) KO retinas. These observations demonstrate that an increased presence of functional sst(2) protects against retinal ischemia, thus implementing the background for the use of sst(2) analogs in therapies of retinal diseases such as glaucoma or diabetic retinopathy.

Observations of Local Positive Low Cloud Feedback Patterns and Their Role in Internal Variability and Climate Sensitivity

NASA Astrophysics Data System (ADS)

Yuan, Tianle; Oreopoulos, Lazaros; Platnick, Steven E.; Meyer, Kerry

2018-05-01

Modeling studies have shown that cloud feedbacks are sensitive to the spatial pattern of sea surface temperature (SST) anomalies, while cloud feedbacks themselves strongly influence the magnitude of SST anomalies. Observational counterparts to such patterned interactions are still needed. Here we show that distinct large-scale patterns of SST and low-cloud cover (LCC) emerge naturally from objective analyses of observations and demonstrate their close coupling in a positive local SST-LCC feedback loop that may be important for both internal variability and climate change. The two patterns that explain the maximum amount of covariance between SST and LCC correspond to the Interdecadal Pacific Oscillation and the Atlantic Multidecadal Oscillation, leading modes of multidecadal internal variability. Spatial patterns and time series of SST and LCC anomalies associated with both modes point to a strong positive local SST-LCC feedback. In many current climate models, our analyses suggest that SST-LCC feedback strength is too weak compared to observations. Modeled local SST-LCC feedback strength affects simulated internal variability so that stronger feedback produces more intense and more realistic patterns of internal variability. To the extent that the physics of the local positive SST-LCC feedback inferred from observed climate variability applies to future greenhouse warming, we anticipate significant amount of delayed warming because of SST-LCC feedback when anthropogenic SST warming eventually overwhelm the effects of internal variability that may mute anthropogenic warming over parts of the ocean. We postulate that many climate models may be underestimating both future warming and the magnitude of modeled internal variability because of their weak SST-LCC feedback.

Highly Increased 125I-JR11 Antagonist Binding In Vitro Reveals Novel Indications for sst2 Targeting in Human Cancers.

PubMed

Reubi, Jean Claude; Waser, Beatrice; Mäcke, Helmut; Rivier, Jean

2017-02-01

There is recent in vitro and in vivo evidence that somatostatin receptor subtype 2 (sst 2 ) antagonists are better tools to target neuroendocrine tumors (NETs) than sst 2 agonists. Indeed, antagonists bind to a greater number of sst 2 sites than agonists. Whether sst 2 antagonists could be used successfully to target non-NETs, expressing low sst 2 density, is unknown. Here, we compare quantitatively 125 I-JR11 sst 2 antagonist binding in vitro with that of the sst 2 agonist 125 I-Tyr 3 -octreotide in large varieties of non-NET and NET. In vitro receptor autoradiography was performed with 125 I-JR11 and 125 I-Tyr 3 -octreotide in cancers from prostate, breast, colon, kidney, thyroid, and lymphoid tissues as well as NETs as reference. In general, 125 I-JR11 binds to many more sst 2 sites than 125 I-Tyr 3 -octreotide. In 13 breast cancers, 8 had a low binding (mean density, 844 ± 168 dpm/mg of tissue) with the agonist whereas 12 had a high binding (mean density, 4,447 ± 1,128 dpm/mg of tissue) with the antagonist. All 12 renal cell cancers showed a low binding of sst 2 with the agonist (mean density, 348 ± 49 dpm/mg of tissue) whereas all cases had a high sst 2 binding with the antagonist (mean density, 3,777 ± 582 dpm/mg of tissue). One of 5 medullary thyroid cancers was positive with the agonist, whereas 5 of 5 were positive with the antagonist. In 15 non-Hodgkin lymphomas, many more sst 2 sites were labeled with the antagonist than with the agonist. In 14 prostate cancers, none had sst 2 binding with the agonist and only 4 had a weak binding with the antagonist. None of 17 colon cancers showed sst 2 sites with the agonist, and only 3 cases were weakly positive with the antagonist. In the various tumor types, adjacent sst 2 -expressing tissues such as vessels, lymphocytes, nerves, mucosa, or stroma were more strongly labeled with the antagonist than with the agonist. The reference NET cases, incubated with a smaller amount of tracer, were also found to have many more sst 2 sites measured with the antagonist. All renal cell cancers and most breast cancers, non-Hodgkin lymphomas, and medullary thyroid cancers represent novel indications for the in vivo radiopeptide targeting of sst 2 by sst 2 antagonists, comparable to NET radiotargeting with sst 2 agonists. © 2017 by the Society of Nuclear Medicine and Molecular Imaging.

Molecular evidence and clinical importance of β-arrestins expression in patients with acromegaly.

PubMed

Coelho, Maria Caroline Alves; Vasquez, Marina Lipkin; Wildemberg, Luiz Eduardo; Vázquez-Borrego, Mari C; Bitana, Luciana; Camacho, Aline Helen da Silva; Silva, Débora; Ogino, Liana Lumi; Ventura, Nina; Chimelli, Leila; Luque, Raul M; Kasuki, Leandro; Gadelha, Mônica R

2018-04-01

β-arrestins seem to have a role in endocytosis and desensitization of somatostatin receptor subtype 2 (sst2) and could be associated with the responsiveness to somatostatin receptor ligands (SRL) in patients with acromegaly. To investigate the in vivo correlation between β-arrestins 1 and 2 with sst2, sst5 and dopamine receptor subtype 2 (D2) expressions, and the association of β-arrestins with response to first-generation SRL and invasiveness in somatotropinomas. β-arrestins 1 and 2, sst2, sst5 and D2 mRNA expressions were evaluated by quantitative real-time RT-PCR on tumoral tissue of 96 patients. Moreover, sst2 and sst5 protein expressions were also evaluated in 40 somatotropinomas by immunohistochemistry. Response to SRL, defined as GH <1 μg/l and normal IGF-I levels, was assessed in 40 patients. The Knosp-Steiner criteria were used to define invasiveness. Median β-arrestin 1, β-arrestin 2, sst2, sst5 and D2 mRNA copy numbers were 478; 9375; 731; 156; and 3989, respectively. There was a positive correlation between β-arrestins 1 and 2 (R = 0.444, P < 0.001). However, no correlation between β-arrestins and sst2, sst5 (mRNA and protein levels) or D2 was found. No association was found between β-arrestins expression and SRL responsiveness or tumour invasiveness. Although previous data suggest a putative correlation between β-arrestins and sst2, our data clearly indicated that no association existed between β-arrestins and sst2, sst5 or D2 expression, nor with response to SRL or tumour invasiveness. Therefore, further studies are required to clarify whether β-arrestins have a role in the response to treatment with SRL in acromegaly. © 2018 The Authors. Journal of Cellular and Molecular Medicine published by John Wiley & Sons Ltd and Foundation for Cellular and Molecular Medicine.

Video-assisted segmentation of speech and audio track

NASA Astrophysics Data System (ADS)

Pandit, Medha; Yusoff, Yusseri; Kittler, Josef; Christmas, William J.; Chilton, E. H. S.

1999-08-01

Video database research is commonly concerned with the storage and retrieval of visual information invovling sequence segmentation, shot representation and video clip retrieval. In multimedia applications, video sequences are usually accompanied by a sound track. The sound track contains potential cues to aid shot segmentation such as different speakers, background music, singing and distinctive sounds. These different acoustic categories can be modeled to allow for an effective database retrieval. In this paper, we address the problem of automatic segmentation of audio track of multimedia material. This audio based segmentation can be combined with video scene shot detection in order to achieve partitioning of the multimedia material into semantically significant segments.

Integrated optimization of location assignment and sequencing in multi-shuttle automated storage and retrieval systems under modified 2n-command cycle pattern

NASA Astrophysics Data System (ADS)

Yang, Peng; Peng, Yongfei; Ye, Bin; Miao, Lixin

2017-09-01

This article explores the integrated optimization problem of location assignment and sequencing in multi-shuttle automated storage/retrieval systems under the modified 2n-command cycle pattern. The decision of storage and retrieval (S/R) location assignment and S/R request sequencing are jointly considered. An integer quadratic programming model is formulated to describe this integrated optimization problem. The optimal travel cycles for multi-shuttle S/R machines can be obtained to process S/R requests in the storage and retrieval request order lists by solving the model. The small-sized instances are optimally solved using CPLEX. For large-sized problems, two tabu search algorithms are proposed, in which the first come, first served and nearest neighbour are used to generate initial solutions. Various numerical experiments are conducted to examine the heuristics' performance and the sensitivity of algorithm parameters. Furthermore, the experimental results are analysed from the viewpoint of practical application, and a parameter list for applying the proposed heuristics is recommended under different real-life scenarios.

WWW Entrez: A Hypertext Retrieval Tool for Molecular Biology.

ERIC Educational Resources Information Center

Epstein, Jonathan A.; Kans, Jonathan A.; Schuler, Gregory D.

This article describes the World Wide Web (WWW) Entrez server which is based upon the National Center for Biotechnology Information's (NCBI) Entrez retrieval database and software. Entrez is a molecular sequence retrieval system that contains an integrated view of portions of Medline and all publicly available nucleotide and protein databases,…

The Complexity of Bit Retrieval

DOE PAGES

Elser, Veit

2018-09-20

Bit retrieval is the problem of reconstructing a periodic binary sequence from its periodic autocorrelation, with applications in cryptography and x-ray crystallography. After defining the problem, with and without noise, we describe and compare various algorithms for solving it. A geometrical constraint satisfaction algorithm, relaxed-reflect-reflect, is currently the best algorithm for noisy bit retrieval.

The Complexity of Bit Retrieval

DOE Office of Scientific and Technical Information (OSTI.GOV)

Elser, Veit

Bit retrieval is the problem of reconstructing a periodic binary sequence from its periodic autocorrelation, with applications in cryptography and x-ray crystallography. After defining the problem, with and without noise, we describe and compare various algorithms for solving it. A geometrical constraint satisfaction algorithm, relaxed-reflect-reflect, is currently the best algorithm for noisy bit retrieval.

A reduction in the asymmetry of ENSO amplitude due to global warming: The role of atmospheric feedback

NASA Astrophysics Data System (ADS)

Ham, Yoo-Geun

2017-08-01

This study analyzes a reduction in the asymmetry of El Niño Southern-Oscillation (ENSO) amplitude due to global warming in Coupled Model Intercomparison Project Phase 5 models. The multimodel-averaged Niño3 skewness during December-February season decreased approximately 40% in the RCP4.5 scenario compared to that in the historical simulation. The change in the nonlinear relationship between sea surface temperature (SST) and precipitation is a key factor for understanding the reduction in ENSO asymmetry due to global warming. In the historical simulations, the background SST leading to the greatest precipitation sensitivity (SST for Maximum Precipitation Sensitivity, SST_MPS) occurs when the positive SST anomaly is located over the equatorial central Pacific. Therefore, an increase in climatological SST due to global warming weakens the atmospheric response during El Niño over the central Pacific. However, the climatological SST over this region in the historical simulation is still lower than the SST_MPS for the negative SST anomaly; therefore, a background SST increase due to global warming can further increase precipitation sensitivity. The atmospheric feedbacks during La Niña are enhanced and increase the La Niña amplitude due to global warming.

Assessing recent warming using instrumentally homogeneous sea surface temperature records.

PubMed

Hausfather, Zeke; Cowtan, Kevin; Clarke, David C; Jacobs, Peter; Richardson, Mark; Rohde, Robert

2017-01-01

Sea surface temperature (SST) records are subject to potential biases due to changing instrumentation and measurement practices. Significant differences exist between commonly used composite SST reconstructions from the National Oceanic and Atmospheric Administration's Extended Reconstruction Sea Surface Temperature (ERSST), the Hadley Centre SST data set (HadSST3), and the Japanese Meteorological Agency's Centennial Observation-Based Estimates of SSTs (COBE-SST) from 2003 to the present. The update from ERSST version 3b to version 4 resulted in an increase in the operational SST trend estimate during the last 19 years from 0.07° to 0.12°C per decade, indicating a higher rate of warming in recent years. We show that ERSST version 4 trends generally agree with largely independent, near-global, and instrumentally homogeneous SST measurements from floating buoys, Argo floats, and radiometer-based satellite measurements that have been developed and deployed during the past two decades. We find a large cooling bias in ERSST version 3b and smaller but significant cooling biases in HadSST3 and COBE-SST from 2003 to the present, with respect to most series examined. These results suggest that reported rates of SST warming in recent years have been underestimated in these three data sets.

BIM-23A760 influences key functional endpoints in pituitary adenomas and normal pituitaries: molecular mechanisms underlying the differential response in adenomas

PubMed Central

Ibáñez-Costa, Alejandro; López-Sánchez, Laura M.; Gahete, Manuel D.; Rivero-Cortés, Esther; Vázquez-Borrego, Mari C.; Gálvez, María A.; de la Riva, Andrés; Venegas-Moreno, Eva; Jiménez-Reina, Luis; Moreno-Carazo, Alberto; Tinahones, Francisco J.; Maraver-Selfa, Silvia; Japón, Miguel A.; García-Arnés, Juan A.; Soto-Moreno, Alfonso; Webb, Susan M.; Kineman, Rhonda D.; Culler, Michael D.; Castaño, Justo P.; Luque, Raúl M.

2017-01-01

Chimeric somatostatin/dopamine compounds such as BIM-23A760, an sst2/sst5/D2 receptors-agonist, have emerged as promising new approaches to treat pituitary adenomas. However, information on direct in vitro effects of BIM-23A760 in normal and tumoral pituitaries remains incomplete. The objective of this study was to analyze BIM-23A760 effects on functional parameters (Ca2+ signaling, hormone expression/secretion, cell viability and apoptosis) in pituitary adenomas (n = 74), and to compare with the responses of normal primate and human pituitaries (n = 3–5). Primate and human normal pituitaries exhibited similar sst2/sst5/D2 expression patterns, wherein BIM-23A760 inhibited the expression/secretion of several pituitary hormones (specially GH/PRL), which was accompanied by increased sst2/sst5/D2 expression in primates and decreased Ca2+ concentration in human cells. In tumoral pituitaries, BIM-23A760 also inhibited Ca2+ concentration, hormone secretion/expression and proliferation. However, BIM-23A760 elicited stimulatory effects in a subset of GHomas, ACTHomas and NFPAs in terms of Ca2+ signaling and/or hormone secretion, which was associated with the relative somatostatin/dopamine-receptors levels, especially sst5 and sst5TMD4. The chimeric sst2/sst5/D2 compound BIM-23A760 affects multiple, clinically relevant parameters on pituitary adenomas and may represent a valuable therapeutic tool. The relative ssts/D2 expression profile, particularly sst5 and/or sst5TMD4 levels, might represent useful molecular markers to predict the ultimate response of pituitary adenomas to BIM-23A760. PMID:28181484

BIM-23A760 influences key functional endpoints in pituitary adenomas and normal pituitaries: molecular mechanisms underlying the differential response in adenomas.

PubMed

Ibáñez-Costa, Alejandro; López-Sánchez, Laura M; Gahete, Manuel D; Rivero-Cortés, Esther; Vázquez-Borrego, Mari C; Gálvez, María A; de la Riva, Andrés; Venegas-Moreno, Eva; Jiménez-Reina, Luis; Moreno-Carazo, Alberto; Tinahones, Francisco J; Maraver-Selfa, Silvia; Japón, Miguel A; García-Arnés, Juan A; Soto-Moreno, Alfonso; Webb, Susan M; Kineman, Rhonda D; Culler, Michael D; Castaño, Justo P; Luque, Raúl M

2017-02-09

Chimeric somatostatin/dopamine compounds such as BIM-23A760, an sst2/sst5/D 2 receptors-agonist, have emerged as promising new approaches to treat pituitary adenomas. However, information on direct in vitro effects of BIM-23A760 in normal and tumoral pituitaries remains incomplete. The objective of this study was to analyze BIM-23A760 effects on functional parameters (Ca 2+ signaling, hormone expression/secretion, cell viability and apoptosis) in pituitary adenomas (n = 74), and to compare with the responses of normal primate and human pituitaries (n = 3-5). Primate and human normal pituitaries exhibited similar sst2/sst5/D2 expression patterns, wherein BIM-23A760 inhibited the expression/secretion of several pituitary hormones (specially GH/PRL), which was accompanied by increased sst2/sst5/D2 expression in primates and decreased Ca 2+ concentration in human cells. In tumoral pituitaries, BIM-23A760 also inhibited Ca 2+ concentration, hormone secretion/expression and proliferation. However, BIM-23A760 elicited stimulatory effects in a subset of GHomas, ACTHomas and NFPAs in terms of Ca 2+ signaling and/or hormone secretion, which was associated with the relative somatostatin/dopamine-receptors levels, especially sst5 and sst5TMD4. The chimeric sst2/sst5/D 2 compound BIM-23A760 affects multiple, clinically relevant parameters on pituitary adenomas and may represent a valuable therapeutic tool. The relative ssts/D 2 expression profile, particularly sst5 and/or sst5TMD4 levels, might represent useful molecular markers to predict the ultimate response of pituitary adenomas to BIM-23A760.

Correcting infrared satellite estimates of sea surface temperature for atmospheric water vapor attenuation

NASA Technical Reports Server (NTRS)

Emery, William J.; Yu, Yunyue; Wick, Gary A.; Schluessel, Peter; Reynolds, Richard W.

1994-01-01

A new satellite sea surface temperature (SST) algorithm is developed that uses nearly coincident measurements from the microwave special sensor microwave imager (SSM/I) to correct for atmospheric moisture attenuation of the infrared signal from the advanced very high resolution radiometer (AVHRR). This new SST algorithm is applied to AVHRR imagery from the South Pacific and Norwegian seas, which are then compared with simultaneous in situ (ship based) measurements of both skin and bulk SST. In addition, an SST algorithm using a quadratic product of the difference between the two AVHRR thermal infrared channels is compared with the in situ measurements. While the quadratic formulation provides a considerable improvement over the older cross product (CPSST) and multichannel (MCSST) algorithms, the SSM/I corrected SST (called the water vapor or WVSST) shows overall smaller errors when compared to both the skin and bulk in situ SST observations. Applied to individual AVHRR images, the WVSST reveals an SST difference pattern (CPSST-WVSST) similar in shape to the water vapor structure while the CPSST-quadratic SST difference appears unrelated in pattern to the nearly coincident water vapor pattern. An application of the WVSST to week-long composites of global area coverage (GAC) AVHRR data demonstrates again the manner in which the WVSST corrects the AVHRR for atmospheric moisture attenuation. By comparison the quadratic SST method underestimates the SST corrections in the lower latitudes and overestimates the SST in th e higher latitudes. Correlations between the AVHRR thermal channel differences and the SSM/I water vapor demonstrate the inability of the channel difference to represent water vapor in the midlatitude and high latitudes during summer. Compared against drifting buoy data the WVSST and the quadratic SST both exhibit the same general behavior with the relatively small differences with the buoy temperatures.

A 20 year independent record of sea surface temperature for climate from Along-Track Scanning Radiometers

NASA Astrophysics Data System (ADS)

Merchant, Christopher J.; Embury, Owen; Rayner, Nick A.; Berry, David I.; Corlett, Gary K.; Lean, Katie; Veal, Karen L.; Kent, Elizabeth C.; Llewellyn-Jones, David T.; Remedios, John J.; Saunders, Roger

2012-12-01

A new record of sea surface temperature (SST) for climate applications is described. This record provides independent corroboration of global variations estimated from SST measurements made in situ. Infrared imagery from Along-Track Scanning Radiometers (ATSRs) is used to create a 20 year time series of SST at 0.1° latitude-longitude resolution, in the ATSR Reprocessing for Climate (ARC) project. A very high degree of independence of in situ measurements is achieved via physics-based techniques. Skin SST and SST estimated for 20 cm depth are provided, with grid cell uncertainty estimates. Comparison with in situ data sets establishes that ARC SSTs generally have bias of order 0.1 K or smaller. The precision of the ARC SSTs is 0.14 K during 2003 to 2009, from three-way error analysis. Over the period 1994 to 2010, ARC SSTs are stable, with better than 95% confidence, to within 0.005 K yr-1(demonstrated for tropical regions). The data set appears useful for cleanly quantifying interannual variability in SST and major SST anomalies. The ARC SST global anomaly time series is compared to the in situ-based Hadley Centre SST data set version 3 (HadSST3). Within known uncertainties in bias adjustments applied to in situ measurements, the independent ARC record and HadSST3 present the same variations in global marine temperature since 1996. Since the in situ observing system evolved significantly in its mix of measurement platforms and techniques over this period, ARC SSTs provide an important corroboration that HadSST3 accurately represents recent variability and change in this essential climate variable.

The Dependence of Cloud-SST Feedback on Circulation Regime and Timescale

NASA Astrophysics Data System (ADS)

Middlemas, E.; Clement, A. C.; Medeiros, B.

2017-12-01

Studies suggest cloud radiative feedback amplifies internal variability of Pacific sea surface temperature (SST) on interannual-and-longer timescales, though only a few modeling studies have tested the quantitative importance of this feedback (Bellomo et al. 2014b, Brown et al. 2016, Radel et al. 2016 Burgman et al. 2017). We prescribe clouds from a previous control run in the radiation module in Community Atmospheric Model (CAM5-slab), a method called "cloud-locking". By comparing this run to a control run, in which cloud radiative forcing can feedback on the climate system, we isolate the effect of cloud radiative forcing on SST variability. Cloud-locking prevents clouds from radiatively interacting with atmospheric circulation, water vapor, and SST, while maintaining a similar mean state to the control. On all timescales, cloud radiative forcing's influence on SST variance is modulated by the circulation regime. Cloud radiative forcing amplifies SST variance in subsiding regimes and dampens SST variance in convecting regimes. In this particular model, a tug of war between latent heat flux and cloud radiative forcing determines the variance of SST, and the winner depends on the timescale. On decadal-and-longer timescales, cloud radiative forcing plays a relatively larger role than on interannual-and-shorter timescales, while latent heat flux plays a smaller role. On longer timescales, the absence of cloud radiative feedback changes SST variance in a zonally asymmetric pattern in the Pacific Ocean that resembles an IPO-like pattern. We also present an analysis of cloud feedback's role on Pacific SST variability among preindustrial control CMIP5 models to test the model robustness of our results. Our results suggest that circulation plays a crucial role in cloud-SST feedbacks across the globe and cloud radiative feedbacks cannot be ignored when studying SST variability on decadal-and-longer timescales.

Inter-decadal variation of the Tropical Atlantic-Korea (TA-K) teleconnection pattern during boreal summer season

NASA Astrophysics Data System (ADS)

Ham, Yoo-Geun; Hwang, YeonJi; Lim, Young-Kwon; Kwon, Minho

2017-12-01

The inter-decadal variation of the positive relationship between the tropical Atlantic sea surface temperature (SST) and Korean precipitation during boreal summer season during 1900-2010 is examined. The 15-year moving correlation between the Tropical Atlantic SST (TAtlSST) index (SST anomalies from 30°S to 30°N and 60°W to 20°E) and Korean precipitation (precipitation anomalies from 35°-40°N to 120°-130°E) during June-July-August exhibits strong inter-decadal variation, which becomes positive at the 95% confidence level after the 1980s. Intensification of the linkage between the TAtlSST index and Korean precipitation after the 1980s is attributed to global warming via the increased background SST. The increase in the background SST over the Atlantic provides background conditions that enhance anomalous convective activity by anomalous Atlantic SST warming. Therefore, the overall atmospheric responses associated with the tropical Atlantic SST warming could intensify. The correlation between the TAtlSST index and Korean precipitation also exhibits strong inter-decadal variation within 1980-2010, which is over 0.8 during early 2000s, while it is relative low (i.e., around 0.6) during the early 1980s. The enhanced co-variability between the tropical and the mid-latitude Atlantic SST during the early 2000s indicates the intensification of TAtlSST-related Rossby wave source over the mid-latitude Atlantic, which excites stationary waves propagated from the Atlantic to the Korean peninsula across northern Europe and northeast Asia. This Rossby-wave train induces a cyclonic flow over the northern edge of the Korea, which intensifies southwesterly and results in precipitation over Korea. This observed decadal difference is well simulated by the stationary wave model experiments with a prescribed TAtlSST-related Rossby wave source over the mid-latitude Atlantic.

Comparison of the Northeast Arctic cod year class strength (at the age of 3+) with the SST anomalies in main spawning ground (the Norwegian Shelf Waters) by results of analysis satellite monitoring data during last years.

NASA Astrophysics Data System (ADS)

Vanyushin, George

2015-04-01

Continuous long-term database (1998-2014) on the sea surface temperature (SST) comprising results of regional satellite monitoring (the Norwegian and the Barents seas) is used to resolve several applied problems. Authors have analyzed indirect influence the SST (the NOAA satellite data) on modern cod total stock biomass (abundance of the Northeast Arctic cod at age 3+). In this study, we went on the consideration of the relationship between the SST anomalies for March-April in the main spawning ground of the cod off the Lofoten islands in the Norwegian Shelf Waters and forecasting assessment of future cod generation success and its future abundance of 3 year old. Mean monthly SST and SST anomalies are computed for the selected area on the basis of the weekly SST maps which made by using the NOAA satellites data for the period 1998-2014. Comparison of the SST anomalies in the main spawning ground with abundance of the cod year class at age 3+ shows that survival of the cod generations was inhibited on the whole as negative (below -0,1C) well as positive SST anomalies (above +1,3C) during March and April. Finally, the results indicate that poor and low middle generations of cod at age 3+ (2002, 2004, 2010) occurred in years with negative or extremely high positive the SST anomalies in the spawning area. The SST anomalies in years which were close to normal significances provide conditions for appearance middle or strong generations of cod (2001-2003, 2005-2009, 2011-2013). So, the SST and SST anomalies (by the NOAA satellite data) characterize of increase in input of warm Atlantic waters which form numerous eddies along the main stream thus creating favorable conditions for spawning and development of the cod larvae and fry and provide them with food stock, finally direct influence on forming total stock biomass of cod and helping its population forecast. Key words: satellite monitoring of SST, the Northeast Arctic cod, spawning ground, forecast of the cod year class strength at age 3+.

Search for Trends and Periodicities in Inter-hemispheric Sea Surface Temperature Difference

NASA Astrophysics Data System (ADS)

Rajesh, R.; Tiwari, R. K.

2018-02-01

Understanding the role of coupled solar and internal ocean dynamics on hemispheric climate variability is critical to climate modelling. We have analysed here 165 year long annual northern hemispheric (NH) and southern hemispheric (SH) sea surface temperature (SST) data employing spectral and statistical techniques to identify the imprints of solar and ocean-atmospheric processes, if any. We reconstructed the eigen modes of NH-SST and SH-SST to reveal non-linear oscillations superimposed on the monotonic trend. Our analysis reveals that the first eigen mode of NH-SST and SH-SST representing long-term trend of SST variability accounts for 15-23% variance. Interestingly, these components are matching with first eigen mode (99% variance) of the total solar irradiance (TSI) suggesting possible impact of solar activity on long-term SST variation. Furthermore, spectral analysis of SSA reconstructed signal revealed statistically significant periodicities of 63 ± 5, 22 ± 2, 10 ± 1, 7.6, 6.3, 5.2, 4.7, and 4.2 years in both NH-SST and SH-SST data. The major harmonics centred at 63 ± 5, 22 ± 2, and 10 ± 1 years are similar to solar periodicities and hence may represent solar forcing, while the components peaking at around 7.6, 6.3, 5.2, 4.7, and 4.2 years apparently falls in the frequency bands of El-Nino-Southern Oscillations linked to the oceanic internal processes. Our analyses also suggest evidence for the amplitude modulation of 9-11 and 21-22 year solar cycles, respectively, by 104 and 163 years in northern and southern hemispheric SST data. The absence of the above periodic oscillations in CO2 fails to suggest its role on observed inter-hemispheric SST difference. The cross-plot analysis also revealed strong influence of solar activity on linear trend of NH- and SH-SST in addition to small contribution from CO2. Our study concludes that (1) the long-term trends in northern and southern hemispheric SST variability show considerable synchronicity with cyclic warming and cooling phases and (2) the difference in cyclic forcing and non-linear modulations stemming from solar variability as a possible source of hemispheric SST differences.

Identification of the receptors for somatostatin (SST) and cortistatin (CST) in chickens and investigation of the roles of cSST28, cSST14, and cCST14 in inhibiting cGHRH1-27NH2-induced growth hormone secretion in cultured chicken pituitary cells.

PubMed

Meng, Fengyan; Huang, Guian; Gao, Shunyu; Li, Juan; Yan, Zhenxin; Wang, Yajun

2014-03-25

Somatostatin receptors (SSTRs) are proposed to mediate the actions of somatostatin (SST) and its related peptide, cortistatin (CST), in vertebrates. However, the identity, functionality, and tissue expression of these receptors remain largely unknown in most non-mammalian vertebrates including birds. In this study, five SSTRs (named cSSTR1, cSSTR2, cSSTR3, cSSTR4, cSSTR5) were cloned from chicken brain by RT-PCR. Using a pGL3-CRE-luciferase reporter system, we demonstrated that activation of each cSSTR expressed in CHO cells by cSST28, cSST14 and cCST14 treatment could inhibit forskolin-induced luciferase activity of CHO cells, indicating the functional coupling of all cSSTRs to Gi protein(s). Interestingly, cSSTR1-4 expressed in CHO cells could be activated by cSST28, cSST14 and cCST14 with high potencies, suggesting that they may function as the receptors common for these peptides. In contrast, cSSTR5 could be potently activated by cSST28 only, indicating that it is a cSST28-specific receptor. Using RT-PCR, wide expression of cSSTRs was detected in chicken tissues including pituitary. In accordance with their expression in pituitary, cSST28, cSST14, and cCST14 were demonstrated to inhibit basal and novel cGHRH1-27NH2-induced GH secretion in cultured chicken pituitary cells dose-dependently (0-10nM) by Western blot analysis, suggesting the involvement of cSSTR(s) common for these peptides in mediating their inhibitory actions. Collectively, our study establishes a molecular basis to elucidate the roles of SST/CST in birds and provide insights into the roles of SST/CST in vertebrates, such as their conserved actions on pituitary. Copyright © 2014 Elsevier Ireland Ltd. All rights reserved.

Remotely-sensed sea surface temperatuares (SST) of Northeaster Pacific Coastal Zones

EPA Science Inventory

Sea surface temperature (SST) is an important indicator of long-term trends and geographical temperature patterns; however there have been relatively few long-term records of SST in near-coastal habitats. In situ SST measurements are irregular in both space and time. Therefore, w...

The contrasting response of Hadley circulation to different meridional structure of sea surface temperature in CMIP5

NASA Astrophysics Data System (ADS)

Feng, Juan; Li, Jianping; Zhu, Jianlei; Li, Yang; Li, Fei

2018-02-01

The response of the Hadley circulation (HC) to the sea surface temperature (SST) is determined by the meridional structure of SST and varies according to the changing nature of this meridional structure. The capability of the models from the phase 5 of the Coupled Model Intercomparison Project (CMIP5) is utilized to represent the contrast response of the HC to different meridional SST structures. To evaluate the responses, the variations of HC and SST were linearly decomposed into two components: the equatorially asymmetric (HEA for HC, and SEA for SST) and equatorially symmetric (HES for HC, and SES for SST) components. The result shows that the climatological features of HC and tropical SST (including the spatial structures and amplitude) are reasonably simulated in all the models. However, the response contrast of HC to different SST meridional structures shows uncertainties among models. This may be due to the fact that the long-term temporal variabilities of HEA, HES, and SEA are limited reproduced in the models, although the spatial structures of their long-term variabilities are relatively reasonably simulated. These results indicate that the performance of the CMIP5 models to simulate long-term temporal variability of different meridional SST structures and related HC variations plays a fundamental role in the successful reproduction of the response of HC to different meridional SST structures.

Sea Surface Temperature Records Using Sr/Ca Ratios in a Siderastrea siderea Coral from SE Cuba

NASA Astrophysics Data System (ADS)

Fargher, H. A.; Hughen, K. A.; Ossolinski, J. E.; Bretos, F.; Siciliano, D.; Gonzalez, P.

2015-12-01

Sea surface temperature (SST) variability from Cuba remains relatively unknown compared to the rest of the Caribbean. Cuba sits near an inflection point in the spatial pattern of SST from the North Atlantic Oscillation (NAO), and long SST records from the region could reveal changes in the influence of this climate system through time. A Siderastrea siderea coral from the Jardínes de la Reina in southern Cuba was drilled to obtain a 220 year long archive of environmental change. The genus Siderastrea has not been extensively studied as an SST archive, yet Sr/Ca ratios in the Cuban core show a clear seasonal signal and strong correlation to instrumental SST data (r2 = 0.86 and 0.36 for monthly and interannual (winter season) timescales, respectively). Annual growth rates (linear extension) of the coral are observed to have a minor influence on Sr/Ca variability, but do not show a direct correlation to SST on timescales from annual to multidecadal. Sr/Ca measurements from the Cuban coral are used to reconstruct monthly and seasonal (winter, summer) SST extending back more than two centuries. Wintertime SST in southern Cuba is compared to other coral Sr/Ca records of winter-season SST from locations sensitive to the NAO in order to investigate the stationarity of the NAO SST 'fingerprint' through time.

galaxie--CGI scripts for sequence identification through automated phylogenetic analysis.

PubMed

Nilsson, R Henrik; Larsson, Karl-Henrik; Ursing, Björn M

2004-06-12

The prevalent use of similarity searches like BLAST to identify sequences and species implicitly assumes the reference database to be of extensive sequence sampling. This is often not the case, restraining the correctness of the outcome as a basis for sequence identification. Phylogenetic inference outperforms similarity searches in retrieving correct phylogenies and consequently sequence identities, and a project was initiated to design a freely available script package for sequence identification through automated Web-based phylogenetic analysis. Three CGI scripts were designed to facilitate qualified sequence identification from a Web interface. Query sequences are aligned to pre-made alignments or to alignments made by ClustalW with entries retrieved from a BLAST search. The subsequent phylogenetic analysis is based on the PHYLIP package for inferring neighbor-joining and parsimony trees. The scripts are highly configurable. A service installation and a version for local use are found at http://andromeda.botany.gu.se/galaxiewelcome.html and http://galaxie.cgb.ki.se

Evaluation of shoulder pathology: three-dimensional enhanced T1 high-resolution isotropic volume excitation MR vs two-dimensional fast spin echo T2 fat saturation MR.

PubMed

Park, H J; Lee, S Y; Kim, M S; Choi, S H; Chung, E C; Kook, S H; Kim, E

2015-03-01

To evaluate the diagnostic accuracy of three-dimensional (3D) enhanced T1 high-resolution isotropic volume excitation (eTHRIVE) shoulder MR for the detection of rotator cuff tears, labral lesions and calcific tendonitis of the rotator cuff in comparison with two-dimensional (2D) fast spin echo T2 fat saturation (FS) MR. This retrospective study included 73 patients who underwent shoulder MRI using the eTHRIVE technique. Shoulder MR images were interpreted separately by two radiologists. They evaluated anatomic identification and image quality of the shoulder joint on routine MRI sequences (axial and oblique coronal T2 FS images) and compared them with the reformatted eTHRIVE images. The images were scored on a four-point scale (0, poor; 1, questionable; 2, adequate; 3, excellent) according to the degree of homogeneous and sufficient fat saturation to penetrate bone and soft tissue, visualization of the glenoid labrum and distinction of the supraspinatus tendon (SST). The diagnostic accuracy of eTHRIVE images compared with routine MRI sequences was evaluated in the setting of rotator cuff tears, glenoid labral injuries and calcific tendonitis of the SST. Fat saturation scores for eTHRIVE were significantly higher than those of the T2 FS for both radiologists. The sensitivity and accuracy of the T2 FS in diagnosing rotor cuff tears were >90%, whereas sensitivity and accuracy of the eTHRIVE method were significantly lower. The sensitivity, specificity and accuracy of both images in diagnosing labral injuries and calcific tendonitis were similar and showed no significant differences. The specificity of both images for the diagnosis of labral injuries and calcific tendonitis was higher than the sensitivities. The accuracy of 3D eTHRIVE imaging was comparable to that of 2D FSE T2 FS for the diagnosis of glenoid labral injury and calcific tendonitis of SST. The 3D eTHRIVE technique was superior to 2D FSE T2 FS in terms of fat saturation. Overall, 3D eTHRIVE was inferior to T2 FS in the evaluation of rotator cuff tears because of poor contrast between joint fluid and tendons. The accuracy of 3D eTHRIVE imaging is comparable to that of 2D FSE T2 FS for the diagnosis of glenoid labral injury and calcific tendonitis of SST.

Orbital forcing on marine organic and carbonate production in the Indo-Pacific during the last 1.7 Myrs

NASA Astrophysics Data System (ADS)

Beaufort, L.; Bolton, C. T.; Mazur, J. C.; Gally, Y.

2017-12-01

The Western Pacific Warm Pool (WPWP) is a place of intense energy storage and redistribution … It is climatically relatively stable with, for example, little seasonality in sea surface temperature (SST). However, significant changes occur in the vertical structure of the upper ocean related to El Nino Southern Oscillation dynamics. These changes significantly impact the phytoplankton communities that are adapted to specific conditions in different layers of the photic zone, and are precisely recorded in the sediments by microfossils such as those produced by coccolithophores. Core MD97-2540 was retrieved on the Eauripik rise in the WPWP and covers, in 37 metres, a time interval spanning the last 1.7 million years (Myrs). Two samples were prepared (settling slide) every 5 cm. The entire coccolith assemblage was counted and identified automatically in each sample using the software SYRACO. Morphometric characteristics (length, thickness, mass…) were measured on every coccolith. Primary productivity (PP) was estimated using a transfer function based on the percentage of the species Florisphaera profunda. Changes in mass (M) of the dominant coccolithophore group, the Noelarhabdaceae (including Emilianiaand Gephyrocapsa), were studied. We also estimated the coccolithophore carbonate export production (CCEP). Those 3 parameters (PP, M and CCEP) show a significant imprint of precession and eccentricity of the Earth's orbit. In contrast to SST and planktic foraminiferal oxygen isotopes measured on the same samples, the coccolithophore parameters exhibit significant 400 kyr cyclicity, and the 100 kyr cycle is present prior to its appearance in the SST and oxygen isotope records 0.9 Myrs ago. This indicates direct forcing by insolation and seasonality on the WPWP, independent of global climatic variations. A discussion of the relationship between the Indian Monsoon and ENSO on orbital and longer timescales is enabled via comparisons with PP and CCEP measured at a similar resolution in a core from the southernmost Bay of Bengal, IODP Site U1443.

AMS 14 C dating controlled records of monsoon and Indonesian throughflow variability from the eastern Indian Ocean of the past 32,000 years

NASA Astrophysics Data System (ADS)

Li, Z. Y.; Chen, M. T.; Shi, X.; Liu, S.; Wang, H.

2015-12-01

Zi-Ye Li a, Min-Te Chen b, Hou-Jie Wang a, Sheng-Fa Liu c, Xue-Fa Shi ca College of Marine Geosciences, Ocean University of China, Qingdao 266100, P.R. Chinab Institute of Applied Geosciences, National Taiwan Ocean University, Keelung, Taiwan 20224, ROCc First Institute of Oceanography, SOA, Qingdao 266100, P.R. China Indonesian throughflow (ITF) is one of the most important currents responsible for transporting heat and moisture from the western Pacific to the Indian Oceans. The ITF is also well-known as effectively in modulating the global climate change with the interactions among ENSO and Asian monsoons. Here we present an AMS 14C dating controlled sea surface temperature (SST) record from core SO184-10043 (07°18.57'S, 105°03.53'E), which was retrieved from 2171m water depth at a north-south depression located at the southeastern offshore area of Sumatera in the eastern Indian Ocean. Based on our high-resolution SST using Mg/Ca analyses based on planktonic foraminifera shells of Globigerinoides ruber and alkenone index, U k'37-SST, oxygen isotope stratigraphy, and AMC 14C age-controls, our records show that, during the past 32,000 years, the SSTs were decreased which imply weaker ITF during Marine Isotope Stage (MIS) 2 and 3. The weaker UTF may respond to strengthened northeast monsoon during the boreal winter. During 21 to 15ka, the southeast monsoon had been stronger and the northeast monsoon was relatively weaker. During 15 to 8ka, rapid sea level rising may allow the opening of the gateways in the Makassar Strait and Lombok Strait that may have further strengthened the ITF. During the early Holocene, the northeast and southeast monsoons seem to be both strengthened. We will discuss the implications of the hydrographic variability and their age uncertainties in this paper during the meeting.

A Palynological Approach to Reconstruct Climatic and Oceanic Variability off Senegal During the Late Holocene

NASA Astrophysics Data System (ADS)

Bouimetarhan, I.; Dupont, L.; Schefuss, E.; Mollenhauer, G.; Stuut, J.; Mulitza, S.; Zonneveld, K.

2007-12-01

Pollen and organic-walled dinoflagellate cyst assemblages from core GeoB9503 retrieved from the mud-belt (50 m water depth) off the Senegal River mouth have been analyzed to reconstruct short-term paleo-oceanographic and paleo-environmental changes in tropical NW Africa during the interval from 4200 to 1200 years before present (BP). Our study emphasizes significant coeval changes in continental vegetation and oceanic environmental changes in and off Senegal. The land-sea correlation is further examined by comparison with paleo-sea surface temperature (SST) reconstructions based on alkenones analyses. These multi-proxy analyses reveal short-term land-sea climatic linkages in the western Sahel during the late Holocene. Initial dry conditions were followed by a strong and rapid humidity increase around 2,800 years BP when the environment became enriched in woody plants and plants requiring wet conditions. This interval is also characterized by the occurrence of dinoflagellate cysts of river plume affinity. We interpret these observations as the result of enhanced Senegal River runoff with high terrigenous input into the ocean and the local occurrence of cool and less-saline surface waters suggesting discharge-induced upwelling off the river mouth. After 2,500 years BP, the environment slowly became drier again, as indicated by slight increases in sahelian savanna and desert elements and SST. Around 2200 years BP, strong fluctuations in pollen and dinocyst accumulation rates in conjunction with periodically lowered SSTs, suggest an episodic "flash flood" events. The driest phase developed after about 1,800 years BP characterized by the decrease of arboreal pollen and its replacement by pollen from the Saharan group and occurrence of pollen of Pinus and Olea that have their source areas in North Africa suggesting strong trade winds. Furthermore, maximum SST in our record and high abundances of dinoflagellate cysts of subtropical/tropical affinity, such as Tuberculodinium vancampoae, indicate high nutrient, warm and stratified surface water conditions over the core site.

A Polyglot Approach to Bioinformatics Data Integration: A Phylogenetic Analysis of HIV-1

PubMed Central

Reisman, Steven; Hatzopoulos, Thomas; Läufer, Konstantin; Thiruvathukal, George K.; Putonti, Catherine

2016-01-01

As sequencing technologies continue to drop in price and increase in throughput, new challenges emerge for the management and accessibility of genomic sequence data. We have developed a pipeline for facilitating the storage, retrieval, and subsequent analysis of molecular data, integrating both sequence and metadata. Taking a polyglot approach involving multiple languages, libraries, and persistence mechanisms, sequence data can be aggregated from publicly available and local repositories. Data are exposed in the form of a RESTful web service, formatted for easy querying, and retrieved for downstream analyses. As a proof of concept, we have developed a resource for annotated HIV-1 sequences. Phylogenetic analyses were conducted for >6,000 HIV-1 sequences revealing spatial and temporal factors influence the evolution of the individual genes uniquely. Nevertheless, signatures of origin can be extrapolated even despite increased globalization. The approach developed here can easily be customized for any species of interest. PMID:26819543

Variability of the Tropical Ocean Surface Temperatures at Decadal-Multidecadal Timescales. Part I: The Atlantic Ocean.

NASA Astrophysics Data System (ADS)

Mehta, Vikram M.

1998-09-01

Gridded time series from the Global Ocean Surface Temperature Atlas were analyzed with a variety of techniques to identify spatial structures and oscillation periods of the tropical Atlantic sea surface temperature (SST) variations at decadal timescales, and to develop physical interpretations of statistical patterns of decadal SST variations. Each time series was 110 yr (1882-1991) long. The tropical Atlantic SST variations were compared with decadal variations in a 74-yr-long (1912-85) north Nordeste Brazil rainfall time series and a 106-yr-long (1886-1991) tropical Atlantic cyclone activity index time series. The tropical Atlantic SST variations were also compared with decadal variations in the extratropical Atlantic SST.Multiyear to multidecadal variations in the cross-equatorial dipole pattern identified as a dominant empirical pattern of the tropical Atlantic SST variations in earlier and present studies are shown to be variations in the approximately north-south gradient of SST anomalies. It is also shown that there was no dynamical-thermodynamical, dipole mode of SST variations during the analysis period. There was a distinct decadal timescale (12-13 yr) of SST variations in the tropical South Atlantic, whereas no distinct decadal timescale was found in the tropical North Atlantic SST variations. Approximately 80% of the coherent decadal variance in the cross-equatorial SST gradient was `explained' by coherent decadal oscillations in the tropical South Atlantic SSTs. There were three, possibly physical, modes of decadal variations in the tropical Atlantic SSTs during the analysis period. In the more energetic mode of the North Atlantic decadal SST variations, anomalies traveled into the tropical North Atlantic from the extratropical North Atlantic along the eastern boundary of the basin. The anomalies strengthened and resided in the tropical North Atlantic for several years, then frequently traveled northward into the mid-high-latitude North Atlantic along the western boundary of the basin, and completed a clockwise rotation around the North Atlantic basin. In the less energetic North Atlantic decadal mode, SST anomalies originated in the tropical-subtropical North Atlantic near the African coast, and traveled northwestward and southward. In the South Atlantic decadal SST mode, anomalies either developed in situ or traveled into the tropical South Atlantic from the subtropical South Atlantic along the eastern boundary of the basin. The anomalies strengthened and resided in the tropical South Atlantic for several years, then frequently traveled southward into the subtropical South Atlantic along the western boundary of the basin, and completed a counterclockwise rotation around the South Atlantic basin. These decadal modes were not a permanent feature of the tropical Atlantic SST variations. The tropical North and South Atlantic SST anomalies frequently extended across the equator. Uncorrelated alignments of decadal SST anomalies having opposite signs on two sides of the equator occasionally created the apperance of a dipole.Independent analyses of the north Nordeste Brazil rainfall showed physical consistency and high coherence with the cross-equatorial SST gradient oscillations at 12-13-yr period. The tropical Atlantic cyclone index showed physical consistency but moderate coherence with the tropical North Atlantic decadal SST variations. The quasi-regularity of the 12-13-yr oscillations in the cross-equatorial SST gradient may provide an opportunity for long lead-time, skillful predictions of climate anomalies in the tropical Atlantic sector.

Is the Aquarius sea surface salinity variability representative?

NASA Astrophysics Data System (ADS)

Carton, J.; Grodsky, S.

2016-12-01

The leading mode of the Aquarius monthly anomalous sea surface salinity (SSS) is evaluated within the 50S-50N belt, where SSS retrieval accuracy is higher. This mode accounts for about 18% of the variance and resembles a pattern of the ENSO-induced anomalous rainfall. The leading mode of SSS variability deducted from a longer JAMSTEC analysis also accounts for about 17% of the variance and has very similar spatial pattern and almost a perfect correspondence of its temporal principal component to the SOI index. In that sense, the Aquarius SSS variability at low and middle latitudes is representative of SSS variability that may be obtained from longer records. This is explained by the fact that during the Aquarius period (2011-2015), the SOI index changed significantly from La Nina toward El Nino state, thus spanning a significant range of its characteristic variations. Multivariate EOF analysis of anomalous SSS and SST suggests that ENSO-induced shift in the tropical Pacific rainfall produces negatively correlated variability of temperature and salinity, which are expected if the anomalous surface flux (stronger rainfall coincident with less downward radiation) drives the system. But, anomalous SSS and SST are positively correlated in some areas including the northwestern Atlantic shelf (north of the Gulfstream) and the Pacific sector adjusting to the California peninsula. This positive correlation is indicative of an advection driven regime that is analyzed separately.

The ASTRI mini-array software system (MASS) implementation: a proposal for the Cherenkov Telescope Array

NASA Astrophysics Data System (ADS)

Tanci, Claudio; Tosti, Gino; Conforti, Vito; Schwarz, Joseph; Antolini, Elisa; Antonelli, L. A.; Bulgarelli, Andrea; Bigongiari, Ciro; Bruno, Pietro; Canestrari, Rodolfo; Capalbi, Milvia; Cascone, Enrico; Catalano, Osvaldo; Di Paola, Andrea; Di Pierro, Federico; Fioretti, Valentina; Gallozzi, Stefano; Gardiol, Daniele; Gianotti, Fulvio; Giro, Enrico; Grillo, Alessandro; La Palombara, Nicola; Leto, Giuseppe; Lombardi, Saverio; Maccarone, Maria C.; Pareschi, Giovanni; Russo, Federico; Sangiorgi, Pierluca; Scuderi, Salvo; Stringhetti, Luca; Testa, Vincenzo; Trifoglio, Massimo; Vercellone, Stefano; Zoli, Andrea

2016-08-01

The ASTRI mini-array, composed of nine small-size dual mirror (SST-2M) telescopes, has been proposed to be installed at the southern site of the Cherenkov Telescope Array (CTA), as a set of preproduction units of the CTA observatory. The ASTRI mini-array is a collaborative and international effort carried out by Italy, Brazil and South Africa and led by the Italian National Institute of Astrophysics, INAF. We present the main features of the current implementation of the Mini-Array Software System (MASS) now in use for the activities of the ASTRI SST-2M telescope prototype located at the INAF observing station on Mt. Etna, Italy and the characteristics that make it a prototype for the CTA control software system. CTA Data Management (CTADATA) and CTA Array Control and Data Acquisition (CTA-ACTL) requirements and guidelines as well as the ASTRI use cases were considered in the MASS design, most of its features are derived from the Atacama Large Millimeter/sub-millimeter Array Control software. The MASS will provide a set of tools to manage all onsite operations of the ASTRI mini-array in order to perform the observations specified in the short term schedule (including monitoring and controlling all the hardware components of each telescope and calibration device), to analyze the acquired data online and to store/retrieve all the data products to/from the onsite repository.

Getting a cue before getting a clue: Event-related potentials to inference in visual narrative comprehension

PubMed Central

Cohn, Neil; Kutas, Marta

2015-01-01

Inference has long been emphasized in the comprehension of verbal and visual narratives. Here, we measured event-related brain potentials to visual sequences designed to elicit inferential processing. In Impoverished sequences, an expressionless “onlooker” watches an undepicted event (e.g., person throws a ball for a dog, then watches the dog chase it) just prior to a surprising finale (e.g., someone else returns the ball), which should lead to an inference (i.e., the different person retrieved the ball). Implied sequences alter this narrative structure by adding visual cues to the critical panel such as a surprised facial expression to the onlooker implying they saw an unexpected, albeit undepicted, event. In contrast, Expected sequences show a predictable, but then confounded, event (i.e., dog retrieves ball, then different person returns it), and Explicit sequences depict the unexpected event (i.e., different person retrieves then returns ball). At the critical penultimate panel, sequences representing depicted events (Explicit, Expected) elicited a larger posterior positivity (P600) than the relatively passive events of an onlooker (Impoverished, Implied), though Implied sequences were slightly more positive than Impoverished sequences. At the subsequent and final panel, a posterior positivity (P600) was greater to images in Impoverished sequences than those in Explicit and Implied sequences, which did not differ. In addition, both sequence types requiring inference (Implied, Impoverished) elicited a larger frontal negativity than those explicitly depicting events (Expected, Explicit). These results show that neural processing differs for visual narratives omitting events versus those depicting events, and that the presence of subtle visual cues can modulate such effects presumably by altering narrative structure. PMID:26320706

Gas Fuelling System for SST-1Tokamak

NASA Astrophysics Data System (ADS)

Dhanani, Kalpesh; Raval, D. C.; Khan, Ziauddin; Semwal, Pratibha; George, Siju; Paravastu, Yuvakiran; Thankey, Prashant; Khan, M. S.; Pradhan, Subrata

2017-04-01

SST-1 Tokamak, the first Indian Steady-state Superconducting experimental device is at present under operation in the Institute for Plasma Research. For plasma break down & initiation, piezoelectric valve based gas feed system is implemented as a primary requirement due to its precise control, easy handling, low construction and maintenance cost and its flexibility in the selection of the working gas. Hydrogen gas feeding with piezoelectric valve is used in the SST-1 plasma experiments. The piezoelectric valves used in SST-1 are remotely driven by a PXI based platform and are calibrated before each SST-1 plasma operation with precise control. This paper will present the technical development and the results of the gas fuelling system of SST-1.

Hippocampal awake replay in fear memory retrieval

PubMed Central

Wu, Chun-Ting; Haggerty, Daniel; Kemere, Caleb; Ji, Daoyun

2017-01-01

Hippocampal place cells are key to episodic memories. How these cells participate in memory retrieval remains unclear. Here, after rats acquired a fear memory by receiving mild foot-shocks at a shock zone of a track, we analyzed place cells when the animals were placed back to the track and displayed an apparent memory retrieval behavior: avoidance of the shock zone. We found that place cells representing the shock zone were reactivated, despite the fact that the animals did not enter the shock zone. This reactivation occurred in ripple-associated awake replay of place cell sequences encoding the paths from the animal’s current positions to the shock zone, but not in place cell sequences within individual cycles of theta oscillation. The result reveals a specific place cell pattern underlying the inhibitory avoidance behavior and provides strong evidence for the involvement of awake replay in fear memory retrieval. PMID:28218916

Indian Ocean corals reveal crucial role of World War II bias for twentieth century warming estimates.

PubMed

Pfeiffer, M; Zinke, J; Dullo, W-C; Garbe-Schönberg, D; Latif, M; Weber, M E

2017-10-31

The western Indian Ocean has been warming faster than any other tropical ocean during the 20 th century, and is the largest contributor to the global mean sea surface temperature (SST) rise. However, the temporal pattern of Indian Ocean warming is poorly constrained and depends on the historical SST product. As all SST products are derived from the International Comprehensive Ocean-Atmosphere dataset (ICOADS), it is challenging to evaluate which product is superior. Here, we present a new, independent SST reconstruction from a set of Porites coral geochemical records from the western Indian Ocean. Our coral reconstruction shows that the World War II bias in the historical sea surface temperature record is the main reason for the differences between the SST products, and affects western Indian Ocean and global mean temperature trends. The 20 th century Indian Ocean warming pattern portrayed by the corals is consistent with the SST product from the Hadley Centre (HadSST3), and suggests that the latter should be used in climate studies that include Indian Ocean SSTs. Our data shows that multi-core coral temperature reconstructions help to evaluate the SST products. Proxy records can provide estimates of 20 th century SST that are truly independent from the ICOADS data base.

Increased serum concentrations of soluble ST2 predict mortality after burn injury.

PubMed

Hacker, Stefan; Dieplinger, Benjamin; Werba, Gregor; Nickl, Stefanie; Roth, Georg A; Krenn, Claus G; Mueller, Thomas; Ankersmit, Hendrik J; Haider, Thomas

2018-06-27

Large burn injuries induce a systemic response in affected patients. Soluble ST2 (sST2) acts as a decoy receptor for interleukin-33 (IL-33) and has immunosuppressive effects. sST2 has been described previously as a prognostic serum marker. Our aim was to evaluate serum concentrations of sST2 and IL-33 after thermal injury and elucidate whether sST2 is associated with mortality in these patients. We included 32 burn patients (total body surface area [TBSA] >10%) admitted to our burn intensive care unit and compared them to eight healthy probands. Serum concentrations of sST2 and IL-33 were measured serially using an enzyme-linked immunosorbent assay (ELISA) technique. The mean TBSA was 32.5%±19.6%. Six patients (18.8%) died during the hospital stay. Serum analyses showed significantly increased concentrations of sST2 and reduced concentrations of IL-33 in burn patients compared to healthy controls. In our study cohort, higher serum concentrations of sST2 were a strong independent predictor of mortality. Burn injuries cause an increment of sST2 serum concentrations with a concomitant reduction of IL-33. Higher concentrations of sST2 are associated with increased in-hospital mortality in burn patients.

Prediction of ENSO episodes using canonical correlation analysis

DOE Office of Scientific and Technical Information (OSTI.GOV)

Barnston, A.G.; Ropelewski, C.F.

Canonical correlation analysis (CCA) is explored as a multivariate linear statistical methodology with which to forecast fluctuations of the El Nino/Southern Oscillation (ENSO) in real time. CCA is capable of identifying critical sequences of predictor patterns that tend to evolve into subsequent pattern that can be used to form a forecast. The CCA model is used to forecast the 3-month mean sea surface temperature (SST) in several regions of the tropical Pacific and Indian oceans for projection times of 0 to 4 seasons beyond the immediately forthcoming season. The predictor variables, representing the climate situation in the four consecutive 3-monthmore » periods ending at the time of the forecast, are (1) quasi-global seasonal mean sea level pressure (SLP) and (2) SST in the predicted regions themselves. Forecast skill is estimated using cross-validation, and persistence is used as the primary skill control measure. Results indicate that a large region in the eastern equatorial Pacific (120[degrees]-170[degrees] W longitude) has the highest overall predictability, with excellent skill realized for winter forecasts made at the end of summer. CCA outperforms persistence in this region under most conditions, and does noticeably better with the SST included as a predictor in addition to the SLP. It is demonstrated that better forecast performance at the longer lead times would be obtained if some significantly earlier (i.e., up to 4 years) predictor data were included, because the ability to predict the lower-frequency ENSO phase changes would increase. The good performance of the current system at shorter lead times appears to be based largely on the ability to predict ENSO evolution for events already in progress. The forecasting of the eastern tropical Pacific SST using CCA is now done routinely on a monthly basis for a O-, 1-, and 2-season lead at the Climate Analysis Center.« less

Lack of evidence for a liver or intestinal miRNA regulation involved in the hypertriglyceridemic effect of APOC3 3'UTR variant SstI.

PubMed

Dancer, Marine; Caussy, Cyrielle; Di Filippo, Mathilde; Moulin, Philippe; Marçais, Christophe; Charrière, Sybil

2016-12-01

APOC3 is a major regulator of triglycerides metabolism. Several APOC3 variants are associated with hypertriglyceridemia (HTG). Our aim was to establish the potential regulation of APOC3 3'UTR variants associated with HTG by liver or intestinal miRNAs. We sequenced APOC3 3'UTR in 100 type 2 diabetic (TD2) patients with severe HTG (TG > 15 mmol/L) (HTG group) compared to 100 normotriglyceridemic patients (NTG group). We performed in silico studies to identify potential loss of miRNA binding induced by APOC3 3'UTR variants. We also performed in vitro studies to test the functionality of miRNA/APOC3 variants interactions: APOC3 3'UTR plasmids coupled with a firefly luciferase reporter were transfected in HepG2, HuH-7 and Caco-2 cells. We identified only two variants: SstI (rs5128) and BbvI (rs5225) in APOC3 3'UTR in the 2 groups of patients. Only the SstI-S2 rare allele was significantly associated with HTG (allele frequency 19,5% in HTG group vs. 9,5% in NTG group, p = 0.0045). In silico studies predicted a potential loss in the binding of 5 miRNAs induced by the S2 variant. These 5 miRNAs are all endogenously expressed in human liver and intestine, as well as in the cell models studied. However, in vitro, the S2 variant did not modulate APOC3 3'UTR reporter gene expression in HepG2, HuH-7 and Caco-2 cells. Our results do not confirm the hypothesis of a direct regulation of the APOC3 SstI variant by hepatic or intestinal miRNAs. Copyright © 2016 Elsevier Ireland Ltd. All rights reserved.

Oceanographic Factors in Fishing Ground Location of Anchovy at Teluk Cenderawasih National Park, West Papua : Are These Factors Have an Effect of Whale Sharks Appearance Frequencies?

NASA Astrophysics Data System (ADS)

Nurul Ihsan, Evi; Yasmina Enita, Siti; Kunarso; Wirasatriya, Anindya

2018-02-01

The appearance frequencies of whale sharks in Teluk Cenderawasih National Park (TCNP) is unique because they appear throughout the year and are not related to any seasons. WWF Indonesia's monitoring results from 2011 untill now showed the appearance of whale sharks is closely related to the presence of fisherman liftnet and anchovies. This study focuses on oceanographic factors in fishing ground areas such as chlorophyll-a and satellite imagery data including chlorophyll-a, Sea surface Temperature (SST) over the last four years resulting in AQUA MODIS level 2 recording with 1km resolution in 2013-2016. The catch of anchovies and chlorophyll-a values showed a fairly good correlation during the west monsoon, 0.305, in addition the relationship between the anchovies with SST has a good correlation value starting in the transition period 1 towards the east monsoon. Based on these data, oceanographic factor conditions in TCNP provide a good opportunity for anchovies that live in warm waters to grow and reproduce. This also influences the appearance of whale sharks closely related to the presence of the anchovies where a positive correlation value is found between the catch of anchovies and whale sharks during the west monsoon and east monsoon in sequence 0,912 and 0.819. Chlorophyll-a and SST have a significant effect on fish catch of anchovies and the appearance frequencies of whale sharks even it were not in all seasons.

The 30-60-day Intraseasonal Variability of Sea Surface Temperature in the South China Sea dur1ing May-September

NASA Astrophysics Data System (ADS)

Mao, Jiangyu; Wang, Ming

2018-05-01

This study investigates the structure and propagation of intraseasonal sea surface temperature (SST) variability in the South China Sea (SCS) on the 30-60-day timescale during boreal summer (May-September). TRMM-based SST, GODAS oceanic reanalysis and ERA-Interim atmospheric reanalysis datasets from 1998 to 2013 are used to examine quantitatively the atmospheric thermodynamic and oceanic dynamic mechanisms responsible for its formation. Power spectra show that the 30-60-day SST variability is predominant, accounting for 60% of the variance of the 10-90-day variability over most of the SCS. Composite analyses demonstrate that the 30-60-day SST variability is characterized by the alternate occurrence of basin-wide positive and negative SST anomalies in the SCS, with positive (negative) SST anomalies accompanied by anomalous northeasterlies (southwesterlies). The transition and expansion of SST anomalies are driven by the monsoonal trough-ridge seesaw pattern that migrates northward from the equator to the northern SCS. Quantitative diagnosis of the composite mixed-layer heat budgets shows that, within a strong 30-60-day cycle, the atmospheric thermal forcing is indeed a dominant factor, with the mixed-layer net heat flux (MNHF) contributing around 60% of the total SST tendency, while vertical entrainment contributes more than 30%. However, the entrainment-induced SST tendency is sometimes as large as the MNHF-induced component, implying that ocean processes are sometimes as important as surface fluxes in generating the 30-60-day SST variability in the SCS.

Resolving Interference between Body Movements: Retrieval-Induced Forgetting of Motor Sequences

ERIC Educational Resources Information Center

Tempel, Tobias; Frings, Christian

2013-01-01

When body movements are stored in memory in an organized manner, linked to a common retrieval cue like the effector with which to execute the movement, interference may arise as soon as one initiates the execution of a specific body movement in the presence of the retrieval cue because related motor programs also are activated. We investigated the…

Representation and alignment of sung queries for music information retrieval

NASA Astrophysics Data System (ADS)

Adams, Norman H.; Wakefield, Gregory H.

2005-09-01

The pursuit of robust and rapid query-by-humming systems, which search melodic databases using sung queries, is a common theme in music information retrieval. The retrieval aspect of this database problem has received considerable attention, whereas the front-end processing of sung queries and the data structure to represent melodies has been based on musical intuition and historical momentum. The present work explores three time series representations for sung queries: a sequence of notes, a ``smooth'' pitch contour, and a sequence of pitch histograms. The performance of the three representations is compared using a collection of naturally sung queries. It is found that the most robust performance is achieved by the representation with highest dimension, the smooth pitch contour, but that this representation presents a formidable computational burden. For all three representations, it is necessary to align the query and target in order to achieve robust performance. The computational cost of the alignment is quadratic, hence it is necessary to keep the dimension small for rapid retrieval. Accordingly, iterative deepening is employed to achieve both robust performance and rapid retrieval. Finally, the conventional iterative framework is expanded to adapt the alignment constraints based on previous iterations, further expediting retrieval without degrading performance.

Combined Effects of the North Atlantic Oscillation and the Arctic Oscillation on Sea Surface Temperature in the Alborán Sea

PubMed Central

Báez, José C.; Gimeno, Luis; Gómez-Gesteira, Moncho; Ferri-Yáñez, Francisco; Real, Raimundo

2013-01-01

We explored the possible effects of the North Atlantic Oscillation (NAO) and Arctic Oscillation (AO) on interannual sea surface temperature (SST) variations in the Alborán Sea, both separately and combined. The probability of observing mean annual SST values higher than average was related to NAO and AO values of the previous year. The effect of NAO on SST was negative, while that of AO was positive. The pure effects of NAO and AO on SST are obscuring each other, due to the positive correlation between them. When decomposing SST, NAO and AO in seasonal values, we found that variation in mean annual SST and mean winter SST was significantly related to the mean autumn NAO of the previous year, while mean summer SST was related to mean autumn AO of the previous year. The one year delay in the effect of the NAO and AO on the SST could be partially related to the amount of accumulated snow, as we found a significant correlation between the total snow in the North Alborán watershed for a year with the annual average SST of the subsequent year. A positive AO implies a colder atmosphere in the Polar Regions, which could favour occasional cold waves over the Iberian Peninsula which, when coupled with precipitations favoured by a negative NAO, may result in snow precipitation. This snow may be accumulated in the high peaks and melt down in spring-summer of the following year, which consequently increases the runoff of freshwater to the sea, which in turn causes a diminution of sea surface salinity and density, and blocks the local upwelling of colder water, resulting in a higher SST. PMID:23638005

Variable School Start Times and Middle School Student's Sleep Health and Academic Performance.

PubMed

Lewin, Daniel S; Wang, Guanghai; Chen, Yao I; Skora, Elizabeth; Hoehn, Jessica; Baylor, Allison; Wang, Jichuan

2017-08-01

Improving sleep health among adolescents is a national health priority and implementing healthy school start times (SSTs) is an important strategy to achieve these goals. This study leveraged the differences in middle school SST in a large district to evaluate associations between SST, sleep health, and academic performance. This cross-sectional study draws data from a county-wide surveillance survey. Participants were three cohorts of eighth graders (n = 26,440). The school district is unique because SST ranged from 7:20 a.m. to 8:10 a.m. Path analysis and probit regression were used to analyze associations between SST and self-report measures of weekday sleep duration, grades, and homework controlling for demographic variables (sex, race, and socioeconomic status). The independent contributions of SST and sleep duration to academic performance were also analyzed. Earlier SST was associated with decreased sleep duration (χ 2  = 173, p < .0001) and deficient sleep (≤7 hours) among 45% of students. Students with SST before 7:45 a.m. were at increased risk of decreased sleep duration, academic performance, and academic effort. Path analysis models demonstrated the independent contributions of sleep duration, SST, and variable effects for demographic variables. This is the first study to evaluate the independent contributions of SST and sleep to academic performance in a large sample of middle school students. Deficient sleep was prevalent, and the earliest SST was associated with decrements in sleep and academics. These findings support the prioritization of policy initiatives to implement healthy SST for younger adolescents and highlight the importance of sleep health education disparities among race and gender groups. Copyright © 2017 Society for Adolescent Health and Medicine. Published by Elsevier Inc. All rights reserved.

Selective central activation of somatostatin receptor 2 increases food intake, grooming behavior and rectal temperature in rats.

PubMed

Stengel, A; Goebel, M; Wang, L; Rivier, J; Kobelt, P; Monnikes, H; Tache, Y

2010-08-01

The consequences of selective activation of brain somatostatin receptor-2 (sst2) were assessed using the sst2 agonist, des-AA(1,4-6,11-13)-[DPhe(2),Aph7(Cbm),DTrp(8)]-Cbm-SST-Thr-NH2. Food intake (FI) was monitored in ad libitum fed rats chronically implanted with an intracerebroventricular (i.c.v.) cannula. The sst(2) agonist injected i.c.v. at 0.1 and 1 microg/rat dose-dependently increased light phase FI from 2 to 6 hours post injection (2.3+/-0.5 and 7.5+/-1.2 respectively vs. vehicle: 0.2+/-0.2 g/300 g bw, P<0.001). Peptide action was reversed by i.c.v. injection of the sst2 antagonist, des-AA(1,4-6,11-13)-[pNO(2)-Phe(2),DCys(3),Tyr(7),DAph(Cbm)8]-SST-2Nal-NH(2) and not reproduced by intraperitoneal injection (30 microg/rat). The sst(2) antagonist alone i.c.v. significantly decreased the cumulative 14-hours dark phase FI by 29.5%. Other behaviors, namely grooming, drinking and locomotor activity were also increased by the sst(2) agonist (1 microg/rat, i.c.v.) as monitored during the 2(nd) hour post injection while gastric emptying of solid food was unaltered. Rectal temperature rose 1 hour after the sst(2) agonist (1 microg/rat, i.c.v.) with a maximal response maintained from 1 to 4 hours post injection. These data show that selective activation of the brain sst(2) receptor induces a feeding response in the light phase not associated with changes in gastric emptying. The food intake reduction following sst(2) receptor blockade suggests a role of this receptor in the orexigenic drive during the dark phase.

Somatostatin Is Essential for the Sexual Dimorphism of GH Secretion, Corticosteroid-Binding Globulin Production, and Corticosterone Levels in Mice

PubMed Central

Adams, Jessica M.; Otero-Corchon, Veronica; Hammond, Geoffrey L.; Veldhuis, Johannes D.; Qi, Nathan

2015-01-01

Distinct male and female patterns of pituitary GH secretion produce sexually differentiated hepatic gene expression profiles, thereby influencing steroid and xenobiotic metabolism. We used a fully automated system to obtain serial nocturnal blood samples every 15 minutes from cannulated wild-type (WT) and somatostatin knockout (Sst-KO) mice to determine the role of SST, the principal inhibitor of GH release, in the generation of sexually dimorphic GH pulsatility. WT males had lower mean and median GH values, less random GH secretory bursts, and longer trough periods between GH pulses than WT females. Each of these parameters was feminized in male Sst-KO mice, whereas female Sst-KO mice had higher GH levels than all other groups, but GH pulsatility was unaffected. We next performed hepatic mRNA profiling with high-density microarrays. Male Sst-KO mice exhibited a globally feminized pattern of GH-dependent mRNA levels, but female Sst-KO mice were largely unaffected. Among the differentially expressed female-predominant genes was Serpina6, which encodes corticosteroid-binding globulin (CBG). Increased CBG was associated with elevated diurnal peak plasma corticosterone in unstressed WT females and both sexes of Sst-KO mice compared with WT males. Sst-KO mice also had exaggerated ACTH and corticosterone responses to acute restraint stress. However, consistent with their lack of phenotypic signs of excess glucocorticoids, cerebrospinal fluid concentrations of free corticosterone in Sst-KO mice were not elevated. In summary, SST is necessary for the prolonged interpulse troughs that define masculinized pituitary GH secretion. SST also contributes to sexual dimorphism of the hypothalamic-pituitary-adrenal axis via GH-dependent regulation of hepatic CBG production. PMID:25551181

Evaluation of somatostatin, CXCR4 chemokine and endothelin A receptor expression in a large set of paragangliomas.

PubMed

Kaemmerer, Daniel; Sänger, Jörg; Arsenic, Ruza; D'Haese, Jan G; Neumann, Jens; Schmitt-Graeff, Annette; Wirtz, Ralph Markus; Schulz, Stefan; Lupp, Amelie

2017-10-27

Paragangliomas are predominantly benign tumors, but in some cases invasive growth and also metastasis are observed. Given the limited number of nonsurgical treatment options, novel target structures for diagnostics and therapy of this tumor entity are urgently needed. In the present study, expression of all five somatostatin receptor (SST) subtypes, chemokine receptor CXCR4 and endothelin receptor type A (ETA) was assessed by means of immunohistochemistry in a total of 66 paraffin-embedded paraganglioma samples from 55 patients. The stainings were rated by means of the Immunoreactive Score and correlated to clinical data and to succinate dehydrogenase subunit B (SDHB) expression. SST2A was by far the most prominent receptor in the paragangliomas investigated. It was present in 89% of the tumors at a high intensity, followed by SST5, SST3, SST1 and SST4, which were detected in 47%, 35%, 35% and 13% of the samples, respectively. SDHB positive tumors exhibited significantly higher SST2A and SST3 expression as compared to SDHB negative cases. There was no correlation between SST and Ki-67 expression or grading of the tumors and no difference in SST expression between primary tumors and metastases. Cell surface expression of CXCR4 and ETA was detected only in few samples. On tumor capillaries, however, exceptionally strong staining for these two receptors was noticed in the vast majority of the tumors. In conclusion, paragangliomas are well suited for SST2A-based diagnostics and treatment modalities. An indirect targeting of these highly vascularized tumors via CXCR4 or ETA may also represent a promising future strategy.

Evaluation of somatostatin, CXCR4 chemokine and endothelin A receptor expression in a large set of paragangliomas

PubMed Central

Kaemmerer, Daniel; Sänger, Jörg; Arsenic, Ruza; D’Haese, Jan G.; Neumann, Jens; Schmitt-Graeff, Annette; Wirtz, Ralph Markus; Schulz, Stefan; Lupp, Amelie

2017-01-01

Paragangliomas are predominantly benign tumors, but in some cases invasive growth and also metastasis are observed. Given the limited number of nonsurgical treatment options, novel target structures for diagnostics and therapy of this tumor entity are urgently needed. In the present study, expression of all five somatostatin receptor (SST) subtypes, chemokine receptor CXCR4 and endothelin receptor type A (ETA) was assessed by means of immunohistochemistry in a total of 66 paraffin-embedded paraganglioma samples from 55 patients. The stainings were rated by means of the Immunoreactive Score and correlated to clinical data and to succinate dehydrogenase subunit B (SDHB) expression. SST2A was by far the most prominent receptor in the paragangliomas investigated. It was present in 89% of the tumors at a high intensity, followed by SST5, SST3, SST1 and SST4, which were detected in 47%, 35%, 35% and 13% of the samples, respectively. SDHB positive tumors exhibited significantly higher SST2A and SST3 expression as compared to SDHB negative cases. There was no correlation between SST and Ki-67 expression or grading of the tumors and no difference in SST expression between primary tumors and metastases. Cell surface expression of CXCR4 and ETA was detected only in few samples. On tumor capillaries, however, exceptionally strong staining for these two receptors was noticed in the vast majority of the tumors. In conclusion, paragangliomas are well suited for SST2A-based diagnostics and treatment modalities. An indirect targeting of these highly vascularized tumors via CXCR4 or ETA may also represent a promising future strategy. PMID:29163802

Understanding the effect of an excessive cold tongue bias on projecting the tropical Pacific SST warming pattern in CMIP5 models

NASA Astrophysics Data System (ADS)

Ying, Jun; Huang, Ping; Lian, Tao; Tan, Hongjian

2018-05-01

An excessive cold tongue is a common bias among current climate models, and considered an important source of bias in projections of tropical Pacific climate change under global warming. Specifically, the excessive cold tongue bias is closely related to the tropical Pacific SST warming (TPSW) pattern. In this study, we reveal that two processes are the critical mechanisms by which the excessive cold tongue bias influences the projection of the TPSW pattern, based on 32 models from phase 5 of Coupled Model Intercomparison Projection (CMIP5). On the one hand, by assuming that the shortwave (SW) radiation to SST feedback is linearly correlated to the cold tongue SST, the excessive cold tongue bias can induce an overly weak negative SW-SST feedback in the central Pacific, which can lead to a positive SST warming bias in the central to western Pacific (around 150°E-140°W). Moreover, the overly weak local atmospheric dynamics response to SST is a key process of the overly weak SW-SST feedback, compared with the cloud response to atmospheric dynamics and the SW radiation response to cloud. On the other hand, the overly strong ocean zonal overturning circulation associated with the excessive cold tongue bias results in an overestimation of the ocean dynamical thermostat effect, with enhanced ocean stratification under global warming, leading to a negative SST warming bias in the central and eastern Pacific (around 170°W-120°W). These two processes jointly form a positive SST warming bias in the western Pacific, contributing to a La Niña-like warming bias. Therefore, we suggest a more realistic climatological cold tongue SST is needed for a more reliable projection of the TPSW pattern.

Investigation of the Iterative Phase Retrieval Algorithm for Interferometric Applications

NASA Astrophysics Data System (ADS)

Gombkötő, Balázs; Kornis, János

2010-04-01

Sequentially recorded intensity patterns reflected from a coherently illuminated diffuse object can be used to reconstruct the complex amplitude of the scattered beam. Several iterative phase retrieval algorithms are known in the literature to obtain the initially unknown phase from these longitudinally displaced intensity patterns. When two sequences are recorded in two different states of a centimeter sized object in optical setups that are similar to digital holographic interferometry-but omitting the reference wave-, displacement, deformation, or shape measurement is theoretically possible. To do this, the retrieved phase pattern should contain information not only about the intensities and locations of the point sources of the object surface, but their relative phase as well. Not only experiments require strict mechanical precision to record useful data, but even in simulations several parameters influence the capabilities of iterative phase retrieval, such as object to camera distance range, uniform or varying camera step sequence, speckle field characteristics, and sampling. Experiments were done to demonstrate this principle with an as large as 5×5 cm sized deformable object as well. Good initial results were obtained in an imaging setup, where the intensity pattern sequences were recorded near the image plane.

Mechanisms underlying modulation of monocarboxylate transporter 1 (MCT1) by somatostatin in human intestinal epithelial cells.

PubMed

Saksena, Seema; Theegala, Saritha; Bansal, Nikhil; Gill, Ravinder K; Tyagi, Sangeeta; Alrefai, Waddah A; Ramaswamy, Krishnamurthy; Dudeja, Pradeep K

2009-11-01

Somatostatin (SST), an important neuropeptide of the gastrointestinal tract has been shown to stimulate sodium chloride absorption and inhibit chloride secretion in the intestine. However, the effects of SST on luminal butyrate absorption in the human intestine have not been investigated. Earlier studies from our group and others have shown that monocarboxylate transporter (MCT1) plays an important role in the transport of butyrate in the human intestine. The present studies were undertaken to examine the effects of SST on butyrate uptake utilizing postconfluent human intestinal epithelial Caco2 cells. Apical SST treatment of Caco-2 cells for 30-60 min significantly increased butyrate uptake in a dose-dependent manner with maximal increase at 50 nM ( approximately 60%, P < 0.05). SST receptor 2 agonist, seglitide, mimicked the effects of SST on butyrate uptake. SST-mediated stimulation of butyrate uptake involved the p38 MAP kinase-dependent pathway. Kinetic studies demonstrated that SST increased the maximal velocity (V(max)) of the transporter by approximately twofold without any change in apparent Michaelis-Menten constant (K(m)). The higher butyrate uptake in response to SST was associated with an increase in the apical membrane levels of MCT1 protein parallel to a decrease in the intracellular MCT1 pool. MCT1 has been shown to interact specifically with CD147 glycoprotein/chaperone to facilitate proper expression and function of MCT1 at the cell surface. SST significantly enhanced the membrane levels of CD147 as well as its association with MCT1. This association was completely abolished by the specific p38 MAP kinase inhibitor, SB203580. Our findings demonstrate that increased MCT1 association with CD147 at the apical membrane in response to SST is p38 MAP kinase dependent and underlies the stimulatory effects of SST on butyrate uptake.

Simulation of Tropical Rainfall Variability

NASA Astrophysics Data System (ADS)

Bader, J.; Latif, M.

2002-12-01

The impact of sea surface temperature (SST) - especially the role of the tropical Atlantic meridional SST gradient and the El Nino-Southern Oscillation - on precipitation is investigated with the atmospheric general circulation model ECHAM4/T42. Ensemble experiments - driven with observed SST - show that Atlantic SST has a significant influence on precipitation over West Africa and northeast Brazil. SST sensitivity experiments were performed in which the climatological SST was enhanced or decreased by one Kelvin in certain ocean areas. Changing SST in the eastern tropical Atlantic caused only significant changes along the Guinea Coast, with a positive anomaly (SSTA) increasing rainfall and a negative SSTA reducing it. The response was nearly linear. Changing SST in other ocean areas caused significant changes over West Africa, especially in the Sahel area. The response is found to be non linear, with only negative SSTA leading to significant reduction in Sahel rainfall. Also, the impact of the SSTAs from the different ocean regions was not additive with respect to the rainfall. The influence of SST on precipitation over northeast Brazil (Nordeste) was also investigated. Three experiments were performed in which the climatological SST was enhanced/decreased or decreased/enhanced by one Kelvin in the North/South Atlantic and increased by two Kelvin in the Nino3 ocean area. All experiments caused significant changes over Nordeste, with an enhanced/reduced SST gradient in the Atlantic increasing/reducing rainfall. The response was nearly linear. The main effect of the Atlantic SST gradient was a shift of the ITCZ, caused by trade wind changes. The ''El Nino'' event generates a significant reduction in Nordeste rainfall. A significant positive SLP anomaly occurs in northeast Brazil which may be associated with the descending branch of the Walker circulation. Also a significant positive SLP over the Atlantic from 30S to 10N north occurs. This results in a reduced SLP gradient from the subtropical highs to the equator and a weakening of the trade winds.

Cross-sectional associations between maternal parenting styles, physical activity and screen sedentary time in children.

PubMed

Van der Geest, K E; Mérelle, S Y M; Rodenburg, G; Van de Mheen, D; Renders, C M

2017-09-29

Children's activity level, including physical activity (PA) and screen sedentary time (SST), is influenced by environmental factors in which parents play a critical role. Different types of parenting styles may influence children's activity level. Inconsistent results were found on the association between parenting styles and PA, and few studies tested the association between parenting styles and SST. This study examined the association between parenting styles, PA and SST and the modifying effect of children's gender and maternal educational level on these associations. Cross-sectional data were collected from parents of children aged 8-11 years old who completed a web-based non-standardized questionnaire (N = 4047). Since 85% of the questionnaires were filled in by mothers, parenting styles are mainly reported by mothers. Multiple linear regression techniques were used to assess the associations between parenting styles (authoritative, permissive, authoritarian and neglectful), and PA and SST (mean min/day). The modifying effect of children's gender and maternal educational level on these associations was explored. P values ≤.0125 were considered as statistically significant based on the Bonferroni correction for four primary analyses. The neglectful parenting style was most widely used (35.3%), while the authoritarian style was least common (14.8%). No significant association was found between parenting styles and PA level. As regards SST, an authoritative parenting style was significantly associated with lower SST in boys while a neglectful parenting style was significantly associated with higher SST in both boys and girls. When the mother had a medium educational level, an authoritative parenting style was significantly associated with lower SST while neglectful parenting was significantly associated with higher SST. No association was found between parenting styles and PA. However, an authoritative parenting style was associated with a reduction in SST and a neglectful parenting style with an increase in SST, especially in boys and in children whose mother had a medium education level. Future studies of parenting practices are needed to gain more insight into the role of parents in children's PA and SST levels, as a basis for the development of interventions tailored to support parents in stimulating PA and reducing SST in children.

Coincident Retrieval of Ocean Surface Roughness and Salinity Using Airborne and Satellite Microwave Radiometry and Reflectometry Measurements during the Carolina Offshore (Caro) Experiment.

NASA Astrophysics Data System (ADS)

Burrage, D. M.; Wesson, J. C.; Wang, D. W.; Garrison, J. L.; Zhang, H.

2017-12-01

The launch of the Cyclone Global Navigation Satellite System (CYGNSS) constellation of 8 microsats carrying GPS L-band reflectometers on 15 Dec., 2016, and continued operation of the L-band radiometer on the European Space Agency (ESA) Soil Moisture and Ocean Salinity (SMOS) satellite, allow these complementary technologies to coincidentally retrieve Ocean surface roughness (Mean Square Slope, MSS), Surface Wind speed (WSP), and Sea Surface Salinity (SSS). The Carolina Offshore (Caro) airborne experiment was conducted jointly by NRL SSC and Purdue University from 7-11 May, 2017 with the goal of under-flying CYGNSS and SMOS and overflying NOAA buoys, to obtain high-resolution reflectometer and radiometer data for combined retrieval of MSS, SSS and WSP on the continental shelf. Airborne instruments included NRL's Salinity Temperature and Roughness Remote Scanner (STARRS) L-, C- and IR-band radiometer system, and a 4-channel dual-pol L-band (GPS) and S-band (XM radio) reflectometer, built by Purdue University. Flights either crossed NOAA buoys on various headings, or intersected with specular point ground tracks at predicted CYGNSS overpass times. Prevailing winds during Caro were light to moderate (1-8 m/s), so specular returns dominated the reflectometer Delay Doppler Maps (DDMs), and MSS was generally low. In contrast, stronger winds (1-12 m/s) and rougher seas (wave heights 1-5 m) were experienced during the preceding Maine Offshore (Maineo) experiment in March, 2016. Several DDM observables were used to retrieve MSS and WSP, and radiometer brightness temperatures produced Sea Surface Temperature (SST), SSS and also WSP estimates. The complementary relationship of Kirchoff's formula e+r=1, between radiometric emissivity, e, and reflectivity, r, was exploited to seek consistent estimates of MSS, and use it to correct the SSS retrievals for sea surface roughness effects. The relative performance and utility of the various airborne and satellite retrieval algorithms were assessed, and the coincident buoy, aircraft and satellite retrievals of MSS, WSP and SSS were compared. During Caro WSP from the different instruments generally agreed. Some anomalously high wind retrievals found here and elsewhere in current CYGNSS Level 2 data may yield to the science team's recent L1 calibration revision.

An ambiguity of information content and error in an ill-posed satellite inversion

NASA Astrophysics Data System (ADS)

Koner, Prabhat

According to Rodgers (2000, stochastic approach), the averaging kernel (AK) is the representational matrix to understand the information content in a scholastic inversion. On the other hand, in deterministic approach this is referred to as model resolution matrix (MRM, Menke 1989). The analysis of AK/MRM can only give some understanding of how much regularization is imposed on the inverse problem. The trace of the AK/MRM matrix, which is the so-called degree of freedom from signal (DFS; stochastic) or degree of freedom in retrieval (DFR; deterministic). There are no physical/mathematical explanations in the literature: why the trace of the matrix is a valid form to calculate this quantity? We will present an ambiguity between information and error using a real life problem of SST retrieval from GOES13. The stochastic information content calculation is based on the linear assumption. The validity of such mathematics in satellite inversion will be questioned because it is based on the nonlinear radiative transfer and ill-conditioned inverse problems. References: Menke, W., 1989: Geophysical data analysis: discrete inverse theory. San Diego academic press. Rodgers, C.D., 2000: Inverse methods for atmospheric soundings: theory and practice. Singapore :World Scientific.

Evaluation of Flygt Propeller Xixers for Double Shell Tank (DST) High Level Waste Auxiliary Solids Mobilization

DOE Office of Scientific and Technical Information (OSTI.GOV)

PACQUET, E.A.

The River Protection Project (RPP) is planning to retrieve radioactive waste from the single-shell tanks (SST) and double-shell tanks (DST) underground at the Hanford Site. This waste will then be transferred to a waste treatment plant to be immobilized (vitrified) in a stable glass form. Over the years, the waste solids in many of the tanks have settled to form a layer of sludge at the bottom. The thickness of the sludge layer varies from tank to tank, from no sludge or a few inches of sludge to about 15 ft of sludge. The purpose of this technology and engineeringmore » case study is to evaluate the Flygt{trademark} submersible propeller mixer as a potential technology for auxiliary mobilization of DST HLW solids. Considering the usage and development to date by other sites in the development of this technology, this study also has the objective of expanding the knowledge base of the Flygt{trademark} mixer concept with the broader perspective of Hanford Site tank waste retrieval. More specifically, the objectives of this study delineated from the work plan are described.« less

An Examination of Intertidal Temperatures Through Remotely Sensed Satellite Observations

NASA Astrophysics Data System (ADS)

Lakshmi, V.

2010-12-01

MODIS Aqua and Terra satellites produce both land surface temperatures and sea surface temperatures using calibrated algorithms. In this study, the land surface temperatures were retrieved during clear-sky (non-cloudy) conditions at a 1 km2 resolution (overpass time at 10:30 am) whereas the sea surface temperatures are also retrieved during clear-sky conditions at approximately 4 km resolution (overpass time at 1:30 pm). The purpose of this research was to examine remotely sensed sea surface (SST), intertidal (IST), and land surface temperatures (LST), in conjunction with observed in situ mussel body temperatures, as well as associated weather and tidal data. In Strawberry Hill, Oregon, it was determined that intertidal surface temperatures are similar to but distinctly different from land surface temperatures although influenced by sea surface temperatures. The air temperature and differential heating throughout the day, as well as location in relation to the shore, can greatly influence the remotely sensed surface temperatures. Therefore, remotely sensed satellite data is a very useful tool in examining intertidal temperatures for regional climatic changes over long time periods and may eventually help researchers forecast expected climate changes and help determine associated biological implications.

Quantized phase coding and connected region labeling for absolute phase retrieval.

PubMed

Chen, Xiangcheng; Wang, Yuwei; Wang, Yajun; Ma, Mengchao; Zeng, Chunnian

2016-12-12

This paper proposes an absolute phase retrieval method for complex object measurement based on quantized phase-coding and connected region labeling. A specific code sequence is embedded into quantized phase of three coded fringes. Connected regions of different codes are labeled and assigned with 3-digit-codes combining the current period and its neighbors. Wrapped phase, more than 36 periods, can be restored with reference to the code sequence. Experimental results verify the capability of the proposed method to measure multiple isolated objects.

Content-based video retrieval by example video clip

NASA Astrophysics Data System (ADS)

Dimitrova, Nevenka; Abdel-Mottaleb, Mohamed

1997-01-01

This paper presents a novel approach for video retrieval from a large archive of MPEG or Motion JPEG compressed video clips. We introduce a retrieval algorithm that takes a video clip as a query and searches the database for clips with similar contents. Video clips are characterized by a sequence of representative frame signatures, which are constructed from DC coefficients and motion information (`DC+M' signatures). The similarity between two video clips is determined by using their respective signatures. This method facilitates retrieval of clips for the purpose of video editing, broadcast news retrieval, or copyright violation detection.

Retrieval of Sentence Sequences for an Image Stream via Coherence Recurrent Convolutional Networks.

PubMed

Park, Cesc Chunseong; Kim, Youngjin; Kim, Gunhee

2018-04-01

We propose an approach for retrieving a sequence of natural sentences for an image stream. Since general users often take a series of pictures on their experiences, much online visual information exists in the form of image streams, for which it would better take into consideration of the whole image stream to produce natural language descriptions. While almost all previous studies have dealt with the relation between a single image and a single natural sentence, our work extends both input and output dimension to a sequence of images and a sequence of sentences. For retrieving a coherent flow of multiple sentences for a photo stream, we propose a multimodal neural architecture called coherence recurrent convolutional network (CRCN), which consists of convolutional neural networks, bidirectional long short-term memory (LSTM) networks, and an entity-based local coherence model. Our approach directly learns from vast user-generated resource of blog posts as text-image parallel training data. We collect more than 22 K unique blog posts with 170 K associated images for the travel topics of NYC, Disneyland , Australia, and Hawaii. We demonstrate that our approach outperforms other state-of-the-art image captioning methods for text sequence generation, using both quantitative measures and user studies via Amazon Mechanical Turk.

The role of ocean-atmosphere interaction in Typhoon Sinlaku (2008) using a regional coupled data assimilation system

NASA Astrophysics Data System (ADS)

Wada, Akiyoshi; Kunii, Masaru

2017-05-01

For improving analyses of tropical cyclone (TC) and sea surface temperature (SST) and thereby TC simulations, a regional mesoscale strongly coupled atmosphere-ocean data assimilation system was developed with the local ensemble transform Kalman filter (LETKF) implemented with the Japan Meteorological Agency's nonhydrostatic model (NHM) coupled with a multilayer ocean model and the third-generation ocean wave model. The NHM-LETKF coupled data assimilation system was applied to Typhoon Sinlaku (2008) along with the original NHM-LETKF system to investigate the sensitivity of Sinlaku to SST assimilation with the Level 2 Pre-processed (L2P) standard product of satellite SST. SST calculated in the coupled-assimilation experiment with the coupled data assimilation system and the satellite SST (CPL) showed a better correlation with Optimally Interpolated SST than SST used in the control experiment with the original NHM-LETKF (CNTL) and SST calculated in the succession experiment with the coupled system without satellite SST (SUCC). The time series in the CPL experiment well captured the variation in the SST observed at the Kuroshio Extension Observation buoy site. In addition, TC-induced sea surface cooling was analyzed more realistically in the CPL experiment than that in the CNTL and SUCC experiments. However, the central pressure analyzed in each three experiments was overestimated compared with the Regional Specialized Meteorological Center Tokyo best-track central pressure, mainly due to the coarse horizontal resolution of 15 km. The 96 h TC simulations indicated that the CPL experiment provided more favorable initial and boundary conditions than the CNTL experiment to simulate TC tracks more accurately.

Somatostatin Signaling in Neuronal Cilia Is Criticalfor Object Recognition Memory

PubMed Central

Einstein, Emily B.; Patterson, Carlyn A.; Hon, Beverly J.; Regan, Kathleen A.; Reddi, Jyoti; Melnikoff, David E.; Mateer, Marcus J.; Schulz, Stefan; Johnson, Brian N.

2010-01-01

Most neurons possess a single, nonmotile cilium that projects out from the cell surface. These microtubule-based organelles are important in brain development and neurogenesis; however, their function in mature neurons is unknown. Cilia express a complement of proteins distinct from other neuronal compartments, one of which is the somatostatin receptor subtype SST3. We show here that SST3 is critical for object recognition memory in mice. sst3 knock-out mice are severely impaired in discriminating novel objects, whereas they retain normal memory for object location. Further, systemic injection of an SST3 antagonist (ACQ090) disrupts recall of familiar objects in wild-type mice. To examine mechanisms of SST3, we tested synaptic plasticity in CA1 hippocampus. Electrically evoked long-term potentiation (LTP) was normal in sst3 knock-out mice, while adenylyl cyclase/cAMP-mediated LTP was impaired. The SST3 antagonist also disrupted cAMP-mediated LTP. Basal cAMP levels in hippocampal lysate were reduced in sst3 knock-out mice compared with wild-type mice, while the forskolin-induced increase in cAMP levels was normal. The SST3 antagonist inhibited forskolin-stimulated cAMP increases, whereas the SST3 agonist L-796,778 increased basal cAMP levels in hippocampal slices but not hippocampal lysate. Our results show that somatostatin signaling in neuronal cilia is critical for recognition memory and suggest that the cAMP pathway is a conserved signaling motif in cilia. Neuronal cilia therefore represent a novel nonsynaptic compartment crucial for signaling involved in a specific form of synaptic plasticity and in novelty detection. PMID:20335466

Long-Term Trends, Variability and Extremes of In Situ Sea Surface Temperature Measured Along the Eastern Adriatic Coast and its Relationship to Hemispheric Processes

NASA Astrophysics Data System (ADS)

Grbec, Branka; Matić, Frano; Beg Paklar, Gordana; Morović, Mira; Popović, Ružica; Vilibić, Ivica

2018-02-01

This paper examines long-term series of in situ sea surface temperature (SST) data measured at nine coastal and one open sea stations along the eastern Adriatic Sea for the period 1959-2015. Monthly and yearly averages were used to document SST trends and variability, while clustering and connections to hemispheric indices were achieved by applying the Principal Component Analysis (PCA) and Self-Organizing Maps (SOM) method. Both PCA and SOM revealed the dominance of temporal changes with respect to the effects of spatial differences in SST anomalies, indicating the prevalence of hemispheric processes over local dynamics, such as bora wind spatial inhomogeneity. SST extremes were connected with blocking atmospheric patterns. A substantial warming between 1979 and 2015, in total exceeding 1 °C, was preceded by a period with a negative SST trend, implying strong multidecadal variability in the Adriatic. The strongest connection was found between yearly SST and the East Atlantic (EA) pattern, while North Atlantic Oscillation (NAO) and East Atlantic/West Russia (EAWR) patterns were found to also affect February SST values. Quantification of the Adriatic SST and their connection to hemispheric indices allow for more precise projections of future SST, considered to be rather important for Adriatic thermohaline circulation, biogeochemistry and fisheries, and sensitive to ongoing climate change.

Possible relationship between East Indian Ocean SST and tropical cyclone affecting Korea

NASA Astrophysics Data System (ADS)

Kim, J. Y.; Choi, K. S.; Kim, B. J.

2014-12-01

In this study, a strong negative correlation was found between East Indian Ocean (EIO) SST and frequency of summertime tropical cyclone (TC) affecting Korea.For the Warm EIO SST years, the TCs mostly occurred in the southwestern region of tropical and subtropical western Pacific, and migrated west toward the southern coast of China and Indochinese peninsula through the South China Sea. This is because the anomalous easterlies, induced by the development of anomalous anticyclone (weakening of monsoon trough) from the tropical central Pacific to the southern coast of China, served as the steering flows for the westward migration of TCs. In contrast, for the cold EIO SST years, the TCs mostly occurred in the northeastern region of tropical and subtropical western Pacific, and migrated toward Korea and Japan located in the mid-latitudes of East Asia through the East China Sea. This is because the northeastward retreat of subtropical western North Pacific high (SWNPH) was more distinct for the cold EIO SST years compared to the warm EIO SST years. Therefore, the TCs of warm EIO SST years weakened or dissipated shortly due to the effect of geographical features as they land on the southern coast of China and Indochinese peninsula, whereas the TCs of cold EIO SST years had stronger intensity than the TCs of warm EIO SST years as sufficient energy is supplied from the ocean while moving toward Korea and Japan.

Skills training for pregnancy and AIDS prevention in Anglo and Latino youth.

PubMed

Hovell, M; Blumberg, E; Sipan, C; Hofstetter, C R; Burkham, S; Atkins, C; Felice, M

1998-09-01

This study tested social skills training (SST), didactic training (DT), and no training (NT) on adolescents' social skills for resisting peer pressure to engage in acquired immunodeficiency syndrome (AIDS) and pregnancy risk behavior. A total of 307 Latino and Anglo youth ages 13-18 years were assigned at random to receive 18 h of SST, 18 h of DT, or NT. Significantly (p < 0.05) greater increases in assertiveness followed SST compared to DT or NT for three trained skills: condom negotiation, asking a friend about their sex/drug history, and discussing a friend's risk of AIDS. Untrained negotiation skills (e.g., purchasing a condom) did not increase significantly. SST did not result in increased assertiveness for refusal skills. DT increased knowledge of AIDS significantly more than SST; both DT and SST increased knowledge significantly more than NT. Social skills training can increase assertiveness for certain negotiation skills that may decrease risk of AIDS for Latino, Anglo, and male and female adolescents. Both DT and SST can increase knowledge of AIDS prevention. Differences between experimental groups were supported by differences between trained and untrained skills within the SST condition, adding to discriminant validity.

Sea surface temperature 1871-2099 in 14 cells around the United Kingdom.

PubMed

Sheppard, Charles

2004-07-01

Monthly sea surface temperature is provided for 14 locations around the UK for a 230 year period. These series are derived from the HadISST1 data set for historical time (1871-1999) and from the HadCM3 climate model for predicted SST (1950-2099). Two adjustments of the forecast data sets are needed to produce confluent SST series: the 50 year overlap is used for a gross adjustment, and a statistical scaling on the forecast data ensures that annual variations in forecast data match those of historical data. These monthly SST series are available on request. The overall rise in SST over time is clear for all sites, commencing in the last quarter of the 20th century. Apart from expected trends of overall warmer mean SST with more southerly latitudes and overall cooler mean SST towards the East, more interesting statistically significant general trends include a greater decadal rate of rise from warmer starting conditions. Annual temperature variation is not affected by absolute temperature, but is markedly greater towards the East. There is no correlation of annual range of SST with latitude, or with present SST values.

The numerical modeling the sensitivity of coastal wind and ozone concentration to different SST forcing

NASA Astrophysics Data System (ADS)

Choi, Hyun-Jung; Lee, Hwa Woon; Jeon, Won-Bae; Lee, Soon-Hwan

2012-01-01

This study evaluated an atmospheric and air quality model of the spatial variability in low-level coastal winds and ozone concentration, which are affected by sea surface temperature (SST) forcing with different thermal gradients. Several numerical experiments examined the effect of sea surface SST forcing on the coastal atmosphere and air quality. In this study, the RAMS-CAMx model was used to estimate the sensitivity to two different resolutions of SST forcing during the episode day as well as to simulate the low-level coastal winds and ozone concentration over a complex coastal area. The regional model reproduced the qualitative effect of SST forcing and thermal gradients on the coastal flow. The high-resolution SST derived from NGSST-O (New Generation Sea Surface Temperature Open Ocean) forcing to resolve the warm SST appeared to enhance the mean response of low-level winds to coastal regions. These wind variations have important implications for coastal air quality. A higher ozone concentration was forecasted when SST data with a high resolution was used with the appropriate limitation of temperature, regional wind circulation, vertical mixing height and nocturnal boundary layer (NBL) near coastal areas.

Column-like EED extending from equatorial topside ionosphere toward plasmasphere retrieved from IGS and LEO/GPS observations with 3-D CT inversion

NASA Astrophysics Data System (ADS)

Xiao, R.; Ma, S. Y.; Xu, J. S.; Xiong, C.; Luehr, H.; Jakowski, N.

2010-05-01

The electron density distributions in the equatorial ionosphere are retrieved from GPS observations of joint ground-based IGS and onboard CHAMP/GRACE satellites during November 2004 super-storm by 3-D tomography technique. For LEO satellite-based GPS receiving, both the occultation TEC data and that along the radio propagation paths above the LEO are used and assimilated into the huge IGS TEC dataset. The electron density images are reconstructed for different sectors of America, Asia and Europe and produced for every hour. The retrieved electron densities are validated by satellite in situ measurements of CHAMP Langmuir probe and GRACE Ka-band SST (low-low satellite-to-satellite tracking) derived electron density averaged between the two satellites, as well as by numerical simulations. It reveals some very interesting storm-time structures of Ne distributions, such as top-hat-like F2-3 double layer and column-like enhanced electron densities (CEED). The CEED are found during the main phase of the storm near the minimum of Dst and in the longitudinal sector centered at 157E. They extend from the topside ionosphere toward to plasmasphere, reaching at least about 2000 km as high. The footprints of the CEED stand on the two peaks of the EIA. The forming mechanism of CEED and its relationship with SED and plasmaspheric plumes are worthy of further study. This work is supported by NSFC (No.40674078).

Western tropical Pacific multidecadal variability forced by the Atlantic multidecadal oscillation

NASA Astrophysics Data System (ADS)

Kucharski, F.; Sun, C.; Li, J.; Jin, F. F.; Kang, I. S.; Ding, R.

2017-12-01

Observational analysis suggests that the western tropical Pacific (WTP) sea surface temperature (SST) shows predominant variability over multidecadal time scales, which is unlikely to be explained by the Interdecadal Pacific Oscillation. Here we show that this variability is largely explained by the remote Atlantic multidecadal oscillation (AMO). A suite of Atlantic Pacemaker experiments successfully reproduces the WTP multidecadal variability and the AMO-WTP SST connection. The AMO warm SST anomaly generates an atmospheric teleconnection to the North Pacific, which weakens the Aleutian low and subtropical North Pacific westerlies. The wind changes induce a subtropical North Pacific SST warming through wind-evaporation-SST effect, and in response to this warming, the surface winds converge towards the subtropical North Pacific from the tropics, leading to anomalous cyclonic circulation and low pressure over the WTP region. The warm SST anomaly further develops due to the SST-sea level pressure-cloud-longwave radiation positive feedback. Our findings suggest that the Atlantic Ocean acts as a key pacemaker for the western Pacific decadal climate variability.

Modulation of the adaptive response to stress by brain activation of selective somatostatin receptor subtypes.

PubMed

Stengel, Andreas; Rivier, Jean; Taché, Yvette

2013-04-01

Somatostatin-14 was discovered in 1973 in the hypothalamus as a peptide inhibiting growth hormone release. Somatostatin interacts with five receptor subtypes (sst(1-5)) which are widely distributed in the brain with a distinct, but overlapping, expression pattern. During the last few years, the development of highly selective peptide agonists and antagonists provided new insight to characterize the role of somatostatin receptor subtypes in the pleiotropic actions of somatostatin. Recent evidence in rodents indicates that the activation of selective somatostatin receptor subtypes in the brain blunts stress-corticotropin-releasing factor (CRF) related ACTH release (sst2/5), sympathetic-adrenal activaton (sst5), stimulation of colonic motility (sst1), delayed gastric emptying (sst5), suppression of food intake (sst2) and the anxiogenic-like (sst2) response. These findings suggest that brain somatostatin signaling pathways may play an important role in dampening CRF-mediated endocrine, sympathetic, behavioral and visceral responses to stress. Published by Elsevier Inc.

Relationship between Trends in Land Precipitation and Tropical SST Gradient

NASA Technical Reports Server (NTRS)

Chung, Chul Eddy; Ramanathan, V.

2007-01-01

In this study, we examined global zonal/annual mean precipitation trends. Land precipitation trend from 1951 to 2002 shows widespread drying between 10 S to 20 N but the trend from 1977 to 2002 shows partial recovery. Based on general circulation model sensitivity studies, we suggested that these features are driven largely by the meridional SST gradient trend in the tropics. Our idealized CCM3 experiments substantiated that land precipitation is more sensitive to meridional SST gradient than to an overall tropical warming. Various simulations produced for the IPCC 4th assessment report demonstrate that increasing CO2 increases SST in the entire tropics non-uniformly and increases land precipitation only in certain latitude belts, again pointing to the importance of SST gradient change. Temporally varying aerosols in the IPCC simulations alter meridional SST gradient and land precipitation substantially. Anthropogenic aerosol direct solar forcing without its effects on SST is shown by the CCM3 to have weak but non-negligible influence on land precipitation.

Western tropical Pacific multidecadal variability forced by the Atlantic multidecadal oscillation

NASA Astrophysics Data System (ADS)

Sun, Cheng; Kucharski, Fred; Li, Jianping; Jin, Fei-Fei; Kang, In-Sik; Ding, Ruiqiang

2017-07-01

Observational analysis suggests that the western tropical Pacific (WTP) sea surface temperature (SST) shows predominant variability over multidecadal time scales, which is unlikely to be explained by the Interdecadal Pacific Oscillation. Here we show that this variability is largely explained by the remote Atlantic multidecadal oscillation (AMO). A suite of Atlantic Pacemaker experiments successfully reproduces the WTP multidecadal variability and the AMO-WTP SST connection. The AMO warm SST anomaly generates an atmospheric teleconnection to the North Pacific, which weakens the Aleutian low and subtropical North Pacific westerlies. The wind changes induce a subtropical North Pacific SST warming through wind-evaporation-SST effect, and in response to this warming, the surface winds converge towards the subtropical North Pacific from the tropics, leading to anomalous cyclonic circulation and low pressure over the WTP region. The warm SST anomaly further develops due to the SST-sea level pressure-cloud-longwave radiation positive feedback. Our findings suggest that the Atlantic Ocean acts as a key pacemaker for the western Pacific decadal climate variability.

Ocean heat budget analysis on sea surface temperature anomaly in western Indian Ocean during strong-weak Asian summer monsoon

NASA Astrophysics Data System (ADS)

Fathrio, Ibnu; Manda, Atsuyoshi; Iizuka, Satoshi; Kodama, Yasu-Masa; Ishida, Sachinobu

2018-05-01

This study presents ocean heat budget analysis on seas surface temperature (SST) anomalies during strong-weak Asian summer monsoon (southwest monsoon). As discussed by previous studies, there was close relationship between variations of Asian summer monsoon and SST anomaly in western Indian Ocean. In this study we utilized ocean heat budget analysis to elucidate the dominant mechanism that is responsible for generating SST anomaly during weak-strong boreal summer monsoon. Our results showed ocean advection plays more important role to initate SST anomaly than the atmospheric prcess (surface heat flux). Scatterplot analysis showed that vertical advection initiated SST anomaly in western Arabian Sea and southwestern Indian Ocean, while zonal advection initiated SST anomaly in western equatorial Indian Ocean.

GenBank

PubMed Central

Benson, Dennis A.; Karsch-Mizrachi, Ilene; Lipman, David J.; Ostell, James; Wheeler, David L.

2007-01-01

GenBank (R) is a comprehensive database that contains publicly available nucleotide sequences for more than 240 000 named organisms, obtained primarily through submissions from individual laboratories and batch submissions from large-scale sequencing projects. Most submissions are made using the web-based BankIt or standalone Sequin programs and accession numbers are assigned by GenBank staff upon receipt. Daily data exchange with the EMBL Data Library in Europe and the DNA Data Bank of Japan ensures worldwide coverage. GenBank is accessible through NCBI's retrieval system, Entrez, which integrates data from the major DNA and protein sequence databases along with taxonomy, genome, mapping, protein structure and domain information, and the biomedical journal literature via PubMed. BLAST provides sequence similarity searches of GenBank and other sequence databases. Complete bimonthly releases and daily updates of the GenBank database are available by FTP. To access GenBank and its related retrieval and analysis services, begin at the NCBI Homepage (). PMID:17202161

Satellite monitoring temperature conditions spawning area of the Northeast Arctic cod in the Norwegian Sea and assessment its abundance

NASA Astrophysics Data System (ADS)

Vanyushin, George; Bulatova, Tatiana; Klochkov, Dmitriy; Troshkov, Anatoliy; Kruzhalov, Michail

2013-04-01

In this study, the attempt to consider the relationship between sea surface anomalies of temperature (SST anomalies °C) in spawning area of the Norwegian Arctic cod off the Lofoten islands in coastal zone of the Norwegian Sea and modern cod total stock biomass including forecasting assessment of future cod generation success. Continuous long-term database of the sea surface temperature (SST) was created on the NOAA satellites data. Mean monthly SST and SST anomalies are computed for the selected area on the basis of the weekly SST maps for the period of 1998-2012. These maps were plotted with the satellite SST data, as well as information of vessels, byoies and coastal stations. All data were classified by spawning seasons (March-April) and years. The results indicate that poor and low middle generations of cod (2001, 2006, 2007) occurred in years with negative or extremely high positive anomalies in the spawning area. The SST anomalies in years which were close to normal or some more normal significances provide conditions for appearance strong or very strong generations of cod (1998, 2000, 2002, 2004, 2005, 2006, 2008, 2009). Temperature conditions in concrete years influence on different indexes of cod directly. So, the mean temperature in spawning seasons in years 1999-2005 was ≈5,0°C and SST anomaly - +0,35°C, by the way average year significances indexes of cod were: total stock biomass - 1425,0 th.t., total spawning biomass - 460,0 th.t., recruitment (age 3+) - 535,0 mln. units and landings - 530,0 th.t. In spawning seasons 2006-2012 years the average data were following: mean SST ≈6,0°C, SST anomaly - +1,29°C, total stock biomass - 2185,0 th.t., total spawning biomass - 1211,0 th.t., recruitment (age 3+) - 821,0 mln. units and landings - 600,0 th.t. The SST and SST anomalies (the NOAA satellite data) characterize increase of decrease in input of warm Atlantic waters which form numerous eddies along the flows of the main warm currents thus creating favorable conditions for development of the cod larvae and fry and provide them with food stock, finally, direct influence on forming total stock biomass of cod and helping its population forecast. Key words: satellite monitoring of SST, Northeast Arctic cod, spawning area, maps of SST, prognosis.

The effects of SST Gradients on Tropical Convective Systems and Implications for Tropical Cyclogenesis

NASA Astrophysics Data System (ADS)

Glazer, R.; Bourassa, M. A.; Hart, R. E.

2013-12-01

It has long been known that generally the warmer the sea surface temperature (SST), the more possible tropical cyclone (TC) genesis is, assuming the atmosphere is supportive. The conventional wisdom has been that - apart from what the TC cools through upwelling -- one value of SST represents the state of the ocean surface in the region of the storm's inner circulation. With the advent of the satellite era and fine resolution SST datasets now becoming available, we know that in reality there are gradients of SST across which developing TCs move. The influence of those gradients on tropical convection and TC genesis is largely unknown at this time. Previous studies have shown that SST gradients can significantly impact the overlying ocean surface winds leading to areas of enhanced convergence/divergence and Vorticity (Chelton et al. 2004; O'Neill et al. 2005, 2010). The magnitude of this effect approximately increases as the surface wind increases. Work by Minobe et al. (2008) concluded that a sharp SST Gradient, over the Gulf Stream for instance, could produce enough surface wind convergence to maintain a band of precipitation along the ocean front. An analysis of satellite derived SST data over the Atlantic shows that it is not uncommon for SST gradients of 2 C/200km or more to exist in the immediate environment of a Tropical System. The authors seek to understand whether the conclusions made in previous works can be applied in the case of a developing Tropical System and whether SST Gradients exist in the Tropical Atlantic to a degree that would influence the cyclogenesis process. To address this, the effects of SST gradients on tropical cyclogenesis processes are investigated using model simulations of the Weather Research and Forecasting Model (WRF). WRF is run at cloud permitting scales (2km) for real cases of co-location between a tropical system and an SST gradient exceeding 2 C/200km in the environment of the system. In subsequent runs to this control run, the SSTs are modified to give a smaller or larger SST Gradient with the same atmospheric conditions. All cases are chosen from Atlantic Hurricane Seasons between 2002-2011. The results are then analyzed in the framework of previous studies that have sought to model and understand tropical cyclogenesis using WRF (Nolan 2007; Fang and Zhang 2010).

On the spread of changes in marine low cloud cover in climate model simulations of the 21st century

NASA Astrophysics Data System (ADS)

Qu, Xin; Hall, Alex; Klein, Stephen A.; Caldwell, Peter M.

2014-05-01

In 36 climate change simulations associated with phases 3 and 5 of the Coupled Model Intercomparison Project (CMIP3 and CMIP5), changes in marine low cloud cover (LCC) exhibit a large spread, and may be either positive or negative. Here we develop a heuristic model to understand the source of the spread. The model's premise is that simulated LCC changes can be interpreted as a linear combination of contributions from factors shaping the clouds' large-scale environment. We focus primarily on two factors—the strength of the inversion capping the atmospheric boundary layer (measured by the estimated inversion strength, EIS) and sea surface temperature (SST). For a given global model, the respective contributions of EIS and SST are computed. This is done by multiplying (1) the current-climate's sensitivity of LCC to EIS or SST variations, by (2) the climate-change signal in EIS or SST. The remaining LCC changes are then attributed to changes in greenhouse gas and aerosol concentrations, and other environmental factors. The heuristic model is remarkably skillful. Its SST term dominates, accounting for nearly two-thirds of the intermodel variance of LCC changes in CMIP3 models, and about half in CMIP5 models. Of the two factors governing the SST term (the SST increase and the sensitivity of LCC to SST perturbations), the SST sensitivity drives the spread in the SST term and hence the spread in the overall LCC changes. This sensitivity varies a great deal from model to model and is strongly linked to the types of cloud and boundary layer parameterizations used in the models. EIS and SST sensitivities are also estimated using observational cloud and meteorological data. The observed sensitivities are generally consistent with the majority of models as well as expectations from prior research. Based on the observed sensitivities and the relative magnitudes of simulated EIS and SST changes (which we argue are also physically reasonable), the heuristic model predicts LCC will decrease over the 21st-century. However, to place a strong constraint, for example on the magnitude of the LCC decrease, will require longer observational records and a careful assessment of other environmental factors producing LCC changes. Meanwhile, addressing biases in simulated EIS and SST sensitivities will clearly be an important step towards reducing intermodel spread in simulated LCC changes.

Group for High Resolution Sea Surface Temperature (GHRSST) analysis fields inter-comparisons—Part 2: Near real time web-based level 4 SST Quality Monitor (L4-SQUAM)

NASA Astrophysics Data System (ADS)

Dash, Prasanjit; Ignatov, Alexander; Martin, Matthew; Donlon, Craig; Brasnett, Bruce; Reynolds, Richard W.; Banzon, Viva; Beggs, Helen; Cayula, Jean-Francois; Chao, Yi; Grumbine, Robert; Maturi, Eileen; Harris, Andy; Mittaz, Jonathan; Sapper, John; Chin, Toshio M.; Vazquez-Cuervo, Jorge; Armstrong, Edward M.; Gentemann, Chelle; Cummings, James; Piollé, Jean-François; Autret, Emmanuelle; Roberts-Jones, Jonah; Ishizaki, Shiro; Høyer, Jacob L.; Poulter, Dave

2012-11-01

There are a growing number of level 4 (L4; gap-free gridded) sea surface temperature (SST) products generated by blending SST data from various sources which are available for use in a wide variety of operational and scientific applications. In most cases, each product has been developed for a specific user community with specific requirements guiding the design of the product. Consequently differences between products are implicit. In addition, anomalous atmospheric conditions, satellite operations and production anomalies may occur which can introduce additional differences. This paper describes a new web-based system called the L4 SST Quality Monitor (L4-SQUAM) developed to monitor the quality of L4 SST products. L4-SQUAM intercompares thirteen L4 products with 1-day latency in an operational environment serving the needs of both L4 SST product users and producers. Relative differences between products are computed and visualized using maps, histograms, time series plots and Hovmöller diagrams, for all combinations of products. In addition, products are compared to quality controlled in situ SST data (available from the in situ SST Quality Monitor, iQUAM, companion system) in a consistent manner. A full history of products statistics is retained in L4-SQUAM for time series analysis. L4-SQUAM complements the two other Group for High Resolution SST (GHRSST) tools, the GHRSST Multi Product Ensemble (GMPE) and the High Resolution Diagnostic Data Set (HRDDS) systems, documented in part 1 of this paper and elsewhere, respectively. Our results reveal significant differences between SST products in coastal and open ocean areas. Differences of >2 °C are often observed at high latitudes partly due to different treatment of the sea-ice transition zone. Thus when an ice flag is available, the intercomparisons are performed in two ways: including and excluding ice-flagged grid points. Such differences are significant and call for a community effort to understand their root cause and ensure consistency between SST products. Future work focuses on including the remaining daily L4 SST products, accommodating for newer L4 SSTs which resolve the diurnal variability and evaluating retrospectively regenerated L4 SSTs to support satellite data reprocessing efforts aimed at generating improved SST Climate Data Records.

Rasch analysis indicates that the Simple Shoulder Test is robust, but minor item modifications and attention to gender differences should be considered.

PubMed

Raman, Jayaprakash; MacDermid, Joy C; Walton, David; Athwal, George S

Repeated cross-sectional study. Multiple studies have evaluated the psychometric properties of the Simple Shoulder Test (SST) through traditional methods supporting it as valid and reliable. Since the evidentiary pool supporting the use of the SST has only partially addressed key measurement properties and the development of SST pre-dates the common use of Rasch model, validation of SST has become a necessity to establish as a reliable and valid PRO for shoulder conditions. To date, no study has analysed SST through Rasch, a modern method for analyzing properties of measurement tools. The purpose of this study was to perform a Rasch analysis of the SST to assess the overall fit to the Rasch model, individual item fit, gender-based DIF, local dependency of items and the unidimensionality of the scale. A secondary purpose was to determine the stability of fit to the Rasch model when captured pre-operatively or post-operatively. Patients completed SST before surgery and between 6 months and 1 year after surgery. Rasch analysis was performed to analyse the carious properties of SST through the Rasch model. SST appears to be robust when tested against the Rasch model. Rasch analysis has highlighted potential areas for to improve in the SST questionnaire. The potential areas to improve are to consider questions that measure the ability of a person to lift the arm above shoulder level and to consider gender differences when measuring the ability to carry weights with the affected arm. This study adds to previous body of empirical evidence arising classical measurement approaches that have suggested that the SST has robust measurement properties, by providing evidence of adequate fit to the Rasch model after minor adjustments. The results of this study should provide confidence to clinicians on SST who wish to use a brief shoulder-specific measure in their practice. The SST appears to be robust when tested against the Rasch model despite some potential areas for improvement. The potential areas that should be explored in future Rasch analyses are the questions that measure the ability of a person to lift the arm above shoulder level and the potential for gender differences when measuring the ability to carry weights with the affected arm. Copyright © 2017 Hanley & Belfus. Published by Elsevier Inc. All rights reserved.

An evaluation of the effect of recent temperature variability on the prediction of coral bleaching events.

PubMed

Donner, Simon D

2011-07-01

Over the past 30 years, warm thermal disturbances have become commonplace on coral reefs worldwide. These periods of anomalous sea surface temperature (SST) can lead to coral bleaching, a breakdown of the symbiosis between the host coral and symbiotic dinoflagellates which reside in coral tissue. The onset of bleaching is typically predicted to occur when the SST exceeds a local climatological maximum by 1 degrees C for a month or more. However, recent evidence suggests that the threshold at which bleaching occurs may depend on thermal history. This study uses global SST data sets (HadISST and NOAA AVHRR) and mass coral bleaching reports (from Reefbase) to examine the effect of historical SST variability on the accuracy of bleaching prediction. Two variability-based bleaching prediction methods are developed from global analysis of seasonal and interannual SST variability. The first method employs a local bleaching threshold derived from the historical variability in maximum annual SST to account for spatial variability in past thermal disturbance frequency. The second method uses a different formula to estimate the local climatological maximum to account for the low seasonality of SST in the tropics. The new prediction methods are tested against the common globally fixed threshold method using the observed bleaching reports. The results find that estimating the bleaching threshold from local historical SST variability delivers the highest predictive power, but also a higher rate of Type I errors. The second method has the lowest predictive power globally, though regional analysis suggests that it may be applicable in equatorial regions. The historical data analysis suggests that the bleaching threshold may have appeared to be constant globally because the magnitude of interannual variability in maximum SST is similar for many of the world's coral reef ecosystems. For example, the results show that a SST anomaly of 1 degrees C is equivalent to 1.73-2.94 standard deviations of the maximum monthly SST for two-thirds of the world's coral reefs. Coral reefs in the few regions that experience anomalously high interannual SST variability like the equatorial Pacific could prove critical to understanding how coral communities acclimate or adapt to frequent and/or severe thermal disturbances.

Influences of Local Sea-Surface Temperatures and Large-scale Dynamics on Monthly Precipitation Inferred from Two 10-year GCM-Simulations

NASA Technical Reports Server (NTRS)

Sud, Y. C.; Walker, G. K.; Zhou, Y.; Lau, W. K.-M.

2007-01-01

Two parallel sets of 10-year long: January 1, 1982 to December 31, 1991, simulations were made with the finite volume General Circulation Model (fvGCM) in which the model integrations were forced with prescribed sea-surface temperature fields (SSTs) available as two separate SST-datasets. One dataset contained naturally varying monthly SSTs for the chosen period, and the oth& had the 12-monthly mean SSTs for the same period. Plots of evaporation, precipitation, and atmosphere-column moisture convergence, binned by l C SST intervals show that except for the tropics, the precipitation is more strongly constrained by large-scale dynamics as opposed to local SST. Binning data by SST naturally provided an ensemble average of data contributed from disparate locations with same SST; such averages could be expected to mitigate all location related influences. However, the plots revealed: i) evaporation, vertical velocity, and precipitation are very robust and remarkably similar for each of the two simulations and even for the data from 1987-ENSO-year simulation; ii) while the evaporation increased monotonically with SST up to about 27 C, the precipitation did not; iii) precipitation correlated much better with the column vertical velocity as opposed to SST suggesting that the influence of dynamical circulation including non-local SSTs is stronger than local-SSTs. The precipitation fields were doubly binned with respect to SST and boundary-layer mass and/or moisture convergence. The analysis discerned the rate of change of precipitation with local SST as a sum of partial derivative of precipitation with local SST plus partial derivative of precipitation with boundary layer moisture convergence multiplied by the rate of change of boundary-layer moisture convergence with SST (see Eqn. 3 of Section 4.5). This analysis is mathematically rigorous as well as provides a quantitative measure of the influence of local SST on the local precipitation. The results were recast to examine the dependence of local rainfall on local SSTs; it was discernible only in the tropics. Our methodology can be used for computing relationship between any forcing function and its effect(s) on a chosen field.

A dual but asymmetric role of the dorsal anterior cingulate cortex in response inhibition and switching from a non-salient to salient action

PubMed Central

Manza, Peter; Hu, Sien; Chao, Herta H.; Zhang, Sheng; Leung, Hoi-Chung; Li, Chiang-shan R.

2016-01-01

Response inhibition and salience detection are among the most studied psychological constructs of cognitive control. Despite a growing body of work, how inhibition and salience processing interact and engage regional brain activations remains unclear. Here, we examined this issue in a stop signal task (SST), where a prepotent response needs to be inhibited to allow an alternative, less dominant response. Sixteen adult individuals performed two versions of the SST each with 25% (SST25) and 75% (SST75) of stop trials. We posited that greater regional activations to the infrequent trial type in each condition (i.e., to stop as compared to go trials in SST25 and to go as compared to stop trials in SST75) support salience detection. Further, successful inhibition in stop trials requires attention to the stop signal to trigger motor inhibition, and the stop signal reaction time (SSRT) has been used to index the efficiency of motor response inhibition. Therefore, greater regional activations to stop as compared to go success trials in association with the stop signal reaction time (SSRT) serves to expedite response inhibition. In support of an interactive role, the dorsal anterior cingulate cortex (dACC) increases activation to salience detection in both SST25 and SST75, but only mediates response inhibition in SST75. Thus, infrequency response in the dACC supports motor inhibition only when stopping has become a routine. In contrast, although the evidence is less robust, the pre-supplementary motor area (pre-SMA) increases activity to the infrequent stimulus and supports inhibition in both SST25 and SST75. These findings clarify a unique role of the dACC and add to the literature that distinguishes dACC and pre-SMA functions in cognitive control. PMID:27126003

A dual but asymmetric role of the dorsal anterior cingulate cortex in response inhibition and switching from a non-salient to salient action.

PubMed

Manza, Peter; Hu, Sien; Chao, Herta H; Zhang, Sheng; Leung, Hoi-Chung; Li, Chiang-Shan R

2016-07-01

Response inhibition and salience detection are among the most studied psychological constructs of cognitive control. Despite a growing body of work, how inhibition and salience processing interact and engage regional brain activations remains unclear. Here, we examined this issue in a stop signal task (SST), where a prepotent response needs to be inhibited to allow an alternative, less dominant response. Sixteen adult individuals performed two versions of the SST each with 25% (SST25) and 75% (SST75) of stop trials. We posited that greater regional activations to the infrequent trial type in each condition (i.e., to stop as compared to go trials in SST25 and to go as compared to stop trials in SST75) support salience detection. Further, successful inhibition in stop trials requires attention to the stop signal to trigger motor inhibition, and the stop signal reaction time (SSRT) has been used to index the efficiency of motor response inhibition. Therefore, greater regional activations to stop as compared to go success trials in association with the stop signal reaction time (SSRT) serve to expedite response inhibition. In support of an interactive role, the dorsal anterior cingulate cortex (dACC) increases activation to salience detection in both SST25 and SST75, but only mediates response inhibition in SST75. Thus, infrequency response in the dACC supports motor inhibition only when stopping has become a routine. In contrast, although the evidence is less robust, the pre-supplementary motor area (pre-SMA) increases activity to the infrequent stimulus and supports inhibition in both SST25 and SST75. These findings clarify a unique role of the dACC and add to the literature that distinguishes dACC and pre-SMA functions in cognitive control. Copyright © 2016 Elsevier Inc. All rights reserved.

Understanding Southern Ocean SST Trends in Historical Simulations and Observations

NASA Astrophysics Data System (ADS)

Kostov, Yavor; Ferreira, David; Marshall, John; Armour, Kyle

2017-04-01

Historical simulations with CMIP5 global climate models do not reproduce the observed 1979-2014 Southern Ocean (SO) cooling, and most ensemble members predict gradual warming around Antarctica. In order to understand this discrepancy and the mechanisms behind the SO cooling, we analyze output from 19 CMIP5 models. For each ensemble member we estimate the characteristic responses of SO SST to step changes in greenhouse gas (GHG) forcing and in the seasonal indices of the Southern Annular Mode (SAM). Using these step-response functions and linear convolution theory, we reconstruct the original CMIP5 simulations of 1979-2014 SO SST trends. We recover the CMIP5 ensemble mean trend, capture the intermodel spread, and reproduce very well the behavior of individual models. We thus suggest that GHG forcing and the SAM are major drivers of the simulated 1979-2014 SO SST trends. In consistence with the seasonal signature of the Antarctic ozone hole, our results imply that the summer (DJF) and fall (MAM) SAM exert a particularly important effect on the SO SST. In some CMIP5 models the SO SST response to SAM partially counteracts the warming due to GHG forcing, while in other ensemble members the SAM-induced SO SST trends complement the warming effect of GHG forcing. The compensation between GHG and SAM-induced SO SST anomalies is model-dependent and is determined by multiple factors. Firstly, CMIP5 models have different characteristic SST step response functions to SAM. Kostov et al. (2016) relate these differences to biases in the models' climatological SO temperature gradients. Secondly, many CMIP5 historical simulations underestimate the observed positive trends in the DJF and MAM seasonal SAM indices. We show that this affects the models' ability to reproduce the observed SO cooling. Last but not least, CMIP5 models differ in their SO SST step response functions to GHG forcing. Understanding the diverse behavior of CMIP5 models helps shed light on the physical processes that drive SST trends in the real SO.

sST2 translation is regulated by FGF2 via an hnRNP A1-mediated IRES-dependent mechanism.

PubMed

Kunze, Michael M; Benz, Fabienne; Brauß, Thilo F; Lampe, Sebastian; Weigand, Julia E; Braun, Johannes; Richter, Florian M; Wittig, Ilka; Brüne, Bernhard; Schmid, Tobias

2016-07-01

Translation is an energy-intensive process and tightly regulated. Generally, translation is initiated in a cap-dependent manner. Under stress conditions, typically found within the tumor microenvironment in association with e.g. nutrient deprivation or hypoxia, cap-dependent translation decreases, and alternative modes of translation initiation become more important. Specifically, internal ribosome entry sites (IRES) facilitate translation of specific mRNAs under otherwise translation-inhibitory conditions. This mechanism is controlled by IRES trans-acting factors (ITAF), i.e. by RNA-binding proteins, which interact with and determine the activity of selected IRESs. We aimed at characterizing the translational regulation of the IL-33 decoy receptor sST2, which was enhanced by fibroblast growth factor 2 (FGF2). We identified and verified an IRES within the 5'UTR of sST2. Furthermore, we found that MEK/ERK signaling contributes to FGF2-induced, sST2-IRES activation and translation. Determination of the sST2-5'UTR structure by in-line probing followed by deletion analyses identified 23 nucleotides within the sST2-5'UTR to be required for optimal IRES activity. Finally, we show that the RNA-binding protein heterogeneous ribonucleoprotein A1 (hnRNP A1) binds to the sST2-5'UTR, acts as an ITAF, and thus controls the activity of the sST2-IRES and consequently sST2 translation. Specifically, FGF2 enhances nuclear-cytoplasmic translocation of hnRNP A1, which requires intact MEK/ERK activity. In summary, we provide evidence that the sST2-5'UTR contains an IRES element, which is activated by a MEK/ERK-dependent increase in cytoplasmic localization of hnRNP A1 in response to FGF2, enhancing the translation of sST2. Copyright © 2016 Elsevier B.V. All rights reserved.

Pathfinder Sea Surface Temperature Climate Data Record

NASA Astrophysics Data System (ADS)

Baker-Yeboah, S.; Saha, K.; Zhang, D.; Casey, K. S.

2016-02-01

Global sea surface temperature (SST) fields are important in understanding ocean and climate variability. The NOAA National Centers for Environmental Information (NCEI) develops and maintains a high resolution, long-term, climate data record (CDR) of global satellite SST. These SST values are generated at approximately 4 km resolution using Advanced Very High Resolution Radiometer (AVHRR) instruments aboard NOAA polar-orbiting satellites going back to 1981. The Pathfinder SST algorithm is based on the Non-Linear SST algorithm using the modernized NASA SeaWiFS Data Analysis System (SeaDAS). Coefficients for this SST product were generated using regression analyses with co-located in situ and satellite measurements. Previous versions of Pathfinder included level 3 collated (L3C) products. Pathfinder Version 5.3 includes level 2 pre-processed (L2P), level 3 Uncollated (L3C), and L3C products. Notably, the data were processed in the cloud using Amazon Web Services and are made available through all of the modern web visualization and subset services provided by the THREDDS Data Server, the Live Access Server, and the OPeNDAP Hyrax Server.In this version of Pathfinder SST, anomalous hot-spots at land-water boundaries are better identified and the dataset includes updated land masks and sea ice data over the Antarctic ice shelves. All quality levels of SST values are generated, giving the user greater flexibility and the option to apply their own cloud-masking procedures. Additional improvements include consistent cloud tree tests for NOAA-07 and NOAA-19 with respect to the other sensors, improved SSTs in sun glint areas, and netCDF file format improvements to ensure consistency with the latest Group for High Resolution SST (GHRSST) requirements. This quality controlled satellite SST field is a reference environmental data record utilized as a primary resource of SST for numerous regional and global marine efforts.

Low frequency North Atlantic SST variability: Weather noise forcing and coupled response

NASA Astrophysics Data System (ADS)

Fan, Meizhu

A method to diagnose the causes of low frequency SST variability is developed, tested and applied in an ideal case and real climate. In the ideal case, a free simulation of the COLA CGCM is taken as synthetic observations. For real climate, we take NCEP reanalysis atmospheric data and Reynolds SST as observations. Both the synthetic and actual observation data show that weather noise is the main component of atmospheric variability at subtropics and high-latitude. Diagnoses of results from the ideal case suggest that most of the synthetic observed SST variability can be reproduced by the weather noise surface fluxes forcing. This includes the "observed" low frequency SST patterns in the North Atlantic and their corresponding time evolution. Among all the noise surface fluxes, heat flux plays a major role. The results from simulations using actual observations also suggest that the observed SST variability is mostly atmospheric weather noise forced. The regional atmospheric noise forcing, especially the heat flux noise forcing, is the major source of the low frequency SST variability in the North Atlantic. The observed SST tripole mode has about a 12 year period and it can be reasonably reproduced by the weather noise forcing in terms of its period, spatial pattern and variance. Based on our diagnosis, it is argued that the SST tripole is mainly forced by local atmospheric heat flux noise. The gyre circulation plays a secondary role: the anomalous gyre circulation advects mean thermal features across the inter-gyre boundary, and the mean gyre advection carries SST anomalies along the inter-gyre boundary. The diagnosis is compared with a delayed oscillator theory. We find that the delayed oscillator theory is not supported and that the SST tripole mode is forced by weather noise heat flux noise. However, the result may be model dependent.

The plasma levels of soluble ST2 as a marker of gut mucosal damage in early HIV infection

PubMed Central

Mehraj, Vikram; Jenabian, Mohammad-Ali; Ponte, Rosalie; Lebouché, Bertrand; Costiniuk, Cecilia; Thomas, Réjean; Baril, Jean-Guy; LeBlanc, Roger; Cox, Joseph; Tremblay, Cécile; Routy, Jean-Pierre

2016-01-01

Objective: Following tissue barrier breaches, interleukin-33 (IL-33) is released as an ‘alarmin’ to induce inflammation. Soluble suppression of tumorigenicity 2 (sST2), as an IL-33 decoy receptor, contributes to limit inflammation. We assessed the relationship between the IL-33/ST2 axis and markers of gut mucosal damage in patients with early (EHI) and chronic HIV infection (CHI) and elite controllers. Design: Analyses on patients with EHI and CHI were conducted to determine IL-33/sST2 changes over time. Methods: IL-33 and sST2 levels were measured in plasma. Correlations between sST2 levels and plasma viral load, CD4+ and CD8+ T-cell counts, expression of T-cell activation/exhaustion markers, gut mucosal damage, microbial translocation and inflammation markers, as well as kynurenine/tryptophan ratio were assessed. Results: Plasma sST2 levels were elevated in EHI compared with untreated CHI and uninfected controls, whereas IL-33 levels were comparable in all groups. In EHI, sST2 levels were positively correlated with the CD8+ T-cell count and the percentage of T cells expressing activation and exhaustion markers, but not with viral load or CD4+ T-cell count. Plasma sST2 levels also correlated with plasma levels of gut mucosal damage, microbial translocation and kynurenine/tryptophan ratio and for some markers of inflammation. Prospective analyses showed that early antiretroviral therapy had no impact on sST2 levels, whereas longer treatment duration initiated during CHI normalized sST2. Conclusion: As sST2 levels were elevated in EHI and were correlated with CD8+ T-cell count, immune activation, and microbial translocation, sST2 may serve as a marker of disease progression, gut damage and may directly contribute to HIV pathogenesis. PMID:27045377

RSAT 2018: regulatory sequence analysis tools 20th anniversary.

PubMed

Nguyen, Nga Thi Thuy; Contreras-Moreira, Bruno; Castro-Mondragon, Jaime A; Santana-Garcia, Walter; Ossio, Raul; Robles-Espinoza, Carla Daniela; Bahin, Mathieu; Collombet, Samuel; Vincens, Pierre; Thieffry, Denis; van Helden, Jacques; Medina-Rivera, Alejandra; Thomas-Chollier, Morgane

2018-05-02

RSAT (Regulatory Sequence Analysis Tools) is a suite of modular tools for the detection and the analysis of cis-regulatory elements in genome sequences. Its main applications are (i) motif discovery, including from genome-wide datasets like ChIP-seq/ATAC-seq, (ii) motif scanning, (iii) motif analysis (quality assessment, comparisons and clustering), (iv) analysis of regulatory variations, (v) comparative genomics. Six public servers jointly support 10 000 genomes from all kingdoms. Six novel or refactored programs have been added since the 2015 NAR Web Software Issue, including updated programs to analyse regulatory variants (retrieve-variation-seq, variation-scan, convert-variations), along with tools to extract sequences from a list of coordinates (retrieve-seq-bed), to select motifs from motif collections (retrieve-matrix), and to extract orthologs based on Ensembl Compara (get-orthologs-compara). Three use cases illustrate the integration of new and refactored tools to the suite. This Anniversary update gives a 20-year perspective on the software suite. RSAT is well-documented and available through Web sites, SOAP/WSDL (Simple Object Access Protocol/Web Services Description Language) web services, virtual machines and stand-alone programs at http://www.rsat.eu/.

GenBank.

PubMed

Benson, Dennis A; Karsch-Mizrachi, Ilene; Lipman, David J; Ostell, James; Wheeler, David L

2008-01-01

GenBank (R) is a comprehensive database that contains publicly available nucleotide sequences for more than 260 000 named organisms, obtained primarily through submissions from individual laboratories and batch submissions from large-scale sequencing projects. Most submissions are made using the web-based BankIt or standalone Sequin programs and accession numbers are assigned by GenBank staff upon receipt. Daily data exchange with the European Molecular Biology Laboratory Nucleotide Sequence Database in Europe and the DNA Data Bank of Japan ensures worldwide coverage. GenBank is accessible through NCBI's retrieval system, Entrez, which integrates data from the major DNA and protein sequence databases along with taxonomy, genome, mapping, protein structure and domain information, and the biomedical journal literature via PubMed. BLAST provides sequence similarity searches of GenBank and other sequence databases. Complete bimonthly releases and daily updates of the GenBank database are available by FTP. To access GenBank and its related retrieval and analysis services, begin at the NCBI Homepage: www.ncbi.nlm.nih.gov.

GenBank

PubMed Central

Benson, Dennis A.; Karsch-Mizrachi, Ilene; Lipman, David J.; Ostell, James; Wheeler, David L.

2008-01-01

GenBank (R) is a comprehensive database that contains publicly available nucleotide sequences for more than 260 000 named organisms, obtained primarily through submissions from individual laboratories and batch submissions from large-scale sequencing projects. Most submissions are made using the web-based BankIt or standalone Sequin programs and accession numbers are assigned by GenBank staff upon receipt. Daily data exchange with the European Molecular Biology Laboratory Nucleotide Sequence Database in Europe and the DNA Data Bank of Japan ensures worldwide coverage. GenBank is accessible through NCBI's retrieval system, Entrez, which integrates data from the major DNA and protein sequence databases along with taxonomy, genome, mapping, protein structure and domain information, and the biomedical journal literature via PubMed. BLAST provides sequence similarity searches of GenBank and other sequence databases. Complete bimonthly releases and daily updates of the GenBank database are available by FTP. To access GenBank and its related retrieval and analysis services, begin at the NCBI Homepage: www.ncbi.nlm.nih.gov PMID:18073190

How much of the interannual variability of East Asian summer rainfall is forced by SST?

NASA Astrophysics Data System (ADS)

He, Chao; Wu, Bo; Li, Chunhui; Lin, Ailan; Gu, Dejun; Zheng, Bin; Zhou, Tianjun

2016-07-01

It is widely accepted that the interannual variability of East Asian summer rainfall is forced by sea surface temperature (SST), and SST anomalies are widely used as predictors of East Asian summer rainfall. But it is still not very clear what percentage of the interannual rainfall variability is contributed by SST anomalies. In this study, Atmospheric general circulation model simulations forced by observed interannual varying SST are compared with those forced by the fixed annual cycle of SST climatology, and their ratios of interannual variance (IAV) are analyzed. The output of 12 models from the 5th Phase of Coupled Model Intercomparison Project (CMIP5) are adopted, and idealized experiments are done by Community Atmosphere Model version 4 (CAM4). Both the multi-model median of CMIP5 models and CAM4 experiments show that only about 18 % of the IAV of rainfall over East Asian land (EAL) is explained by SST, which is significantly lower than the tropical western Pacific, but comparable to the mid-latitude western Pacific. There is no significant difference between the southern part and the northern part of EAL in the percentages of SST contribution. The remote SST anomalies regulates rainfall over EAL probably by modulating the horizontal water vapor transport rather than the vertical motion, since the horizontal water vapor transport into EAL is strongly modulated by SST but the vertical motion over EAL is not. Previous studies argued about the relative importance of tropical Indian Ocean and tropical Pacific Ocean to East Asian summer rainfall anomalies. Our idealized experiments performed by CAM4 suggest that the contributions from these two ocean basins are comparable to each other, both of which account for approximately 6 % of the total IAV of rainfall over EAL.

Impact of High Resolution SST Data on Regional Weather Forecasts

NASA Technical Reports Server (NTRS)

Jedlovec, Gary J.; Case, Jonathon; LaFontaine, Frank; Vazquez, Jorge; Mattocks, Craig

2010-01-01

Past studies have shown that the use of coarse resolution SST products such as from the real-time global (RTG) SST analysis[1] or other coarse resolution once-a-day products do not properly portray the diurnal variability of fluxes of heat and moisture from the ocean that drive the formation of low level clouds and precipitation over the ocean. For example, the use of high resolution MODIS SST composite [2] to initialize the Advanced Research Weather Research and Forecast (WRF) (ARW) [3] has been shown to improve the prediction of sensible weather parameters in coastal regions [4][5}. In an extend study, [6] compared the MODIS SST composite product to the RTG SST analysis and evaluated forecast differences for a 6 month period from March through August 2007 over the Florida coastal regions. In a comparison to buoy data, they found that that the MODIS SST composites reduced the bias and standard deviation over that of the RTG data. These improvements led to significant changes in the initial and forecasted heat fluxes and the resulting surface temperature fields, wind patterns, and cloud distributions. They also showed that the MODIS composite SST product, produced for the Terra and Aqua satellite overpass times, captured a component of the diurnal cycle in SSTs not represented in the RTG or other one-a-day SST analyses. Failure to properly incorporate these effects in the WRF initialization cycle led to temperature biases in the resulting short term forecasts. The forecast impact was limited in some situations however, due to composite product inaccuracies brought about by data latency during periods of long-term cloud cover. This paper focuses on the forecast impact of an enhanced MODIS/AMSR-E composite SST product designed to reduce inaccuracies due data latency in the MODIS only composite product.

Not So Giants: Mice Lacking Both Somatostatin and Cortistatin Have High GH Levels but Show No Changes in Growth Rate or IGF-1 Levels.

PubMed

Pedraza-Arévalo, S; Córdoba-Chacón, J; Pozo-Salas, A I; L-López, F; de Lecea, L; Gahete, M D; Castaño, J P; Luque, R M

2015-06-01

Somatostatin (SST) and cortistatin (CORT) are two highly related neuropeptides involved in the regulation of various endocrine secretions. In particular, SST and CORT are two primary negative regulators of GH secretion. Consequently, single SST or CORT knockout mice exhibit elevated GH levels; however, this does not lead to increased IGF-1 levels or somatic growth. This apparent lack of correspondence has been suggested to result from compensatory mechanisms between both peptides. To test this hypothesis, in this study we explored, for the first time, the consequences of simultaneously deleting endogenous SST and CORT by generating a double SST/CORT knockout mouse model and exploring its endocrine and metabolic phenotype. Our results demonstrate that simultaneous deletion of SST and CORT induced a drastic elevation of endogenous GH levels, which, surprisingly, did not lead to changes in growth rate or IGF-1 levels, suggesting the existence of additional factors/systems that, in the absence of endogenous SST and CORT, could counteract GH actions. Notably, elevation in circulating GH levels were not accompanied by changes in pituitary GH expression or by alterations in the expression of its main regulators (GHRH and ghrelin) or their receptors (GHRH receptor, GHS receptor, or SST/CORT receptors) at the hypothalamic or pituitary level. However, although double-SST/CORT knockout male mice exhibited normal glucose and insulin levels, they had improved insulin sensitivity compared with the control mice. Therefore, these results suggest the existence of an intricate interplay among the known (SST/CORT), and likely unknown, inhibitory components of the GH/IGF-1 axis to regulate somatic growth and glucose/insulin homeostasis.

The Use of Neural Networks in Identifying Error Sources in Satellite-Derived Tropical SST Estimates

PubMed Central

Lee, Yung-Hsiang; Ho, Chung-Ru; Su, Feng-Chun; Kuo, Nan-Jung; Cheng, Yu-Hsin

2011-01-01

An neural network model of data mining is used to identify error sources in satellite-derived tropical sea surface temperature (SST) estimates from thermal infrared sensors onboard the Geostationary Operational Environmental Satellite (GOES). By using the Back Propagation Network (BPN) algorithm, it is found that air temperature, relative humidity, and wind speed variation are the major factors causing the errors of GOES SST products in the tropical Pacific. The accuracy of SST estimates is also improved by the model. The root mean square error (RMSE) for the daily SST estimate is reduced from 0.58 K to 0.38 K and mean absolute percentage error (MAPE) is 1.03%. For the hourly mean SST estimate, its RMSE is also reduced from 0.66 K to 0.44 K and the MAPE is 1.3%. PMID:22164030

Adaptive synchrosqueezing based on a quilted short-time Fourier transform

NASA Astrophysics Data System (ADS)

Berrian, Alexander; Saito, Naoki

2017-08-01

In recent years, the synchrosqueezing transform (SST) has gained popularity as a method for the analysis of signals that can be broken down into multiple components determined by instantaneous amplitudes and phases. One such version of SST, based on the short-time Fourier transform (STFT), enables the sharpening of instantaneous frequency (IF) information derived from the STFT, as well as the separation of amplitude-phase components corresponding to distinct IF curves. However, this SST is limited by the time-frequency resolution of the underlying window function, and may not resolve signals exhibiting diverse time-frequency behaviors with sufficient accuracy. In this work, we develop a framework for an SST based on a "quilted" short-time Fourier transform (SST-QSTFT), which allows adaptation to signal behavior in separate time-frequency regions through the use of multiple windows. This motivates us to introduce a discrete reassignment frequency formula based on a finite difference of the phase spectrum, ensuring computational accuracy for a wider variety of windows. We develop a theoretical framework for the SST-QSTFT in both the continuous and the discrete settings, and describe an algorithm for the automatic selection of optimal windows depending on the region of interest. Using synthetic data, we demonstrate the superior numerical performance of SST-QSTFT relative to other SST methods in a noisy context. Finally, we apply SST-QSTFT to audio recordings of animal calls to demonstrate the potential of our method for the analysis of real bioacoustic signals.

Psychometric Properties of the Persian Version of the Simple Shoulder Test (SST) Questionnaire.

PubMed

Ebrahimzadeh, Mohammad H; Vahedi, Ehsan; Baradaran, Aslan; Birjandinejad, Ali; Seyyed-Hoseinian, Seyyed-Hadi; Bagheri, Farshid; Kachooei, Amir Reza

2016-10-01

To validate the Persian version of the simple shoulder test in patients with shoulder joint problems. Following Beaton`s guideline, translation and back translation was conducted. We reached to a consensus on the Persian version of SST. To test the face validity in a pilot study, the Persian SST was administered to 20 individuals with shoulder joint conditions. We enrolled 148 consecutive patients with shoulder problem to fill the Persian SST, shoulder specific measure including Oxford shoulder score (OSS) and two general measures including DASH and SF-36. To measure the test-retest reliability, 42 patients were randomly asked to fill the Persian-SST for the second time after one week. Cronbach's alpha coefficient was used to demonstrate internal consistency over the 12 items of Persian-SST. ICC for the total questionnaire was 0.61 showing good and acceptable test-retest reliability. ICC for individual items ranged from 0.32 to 0.79. The total Cronbach's alpha was 0.84 showing good internal consistency over the 12 items of the Persian-SST. Validity testing showed strong correlation between SST and OSS and DASH. The correlation with OSS was positive while with DASH scores was negative. The correlation was also good to strong with all physical and most mental subscales of the SF-36. Correlation coefficient was higher with DASH and OSS in compare to SF-36. Persian version of SST found to be valid and reliable instrument for shoulder joint pain and function assessment in Iranian population.

The Sulfate Transporter SST1 Is Crucial for Symbiotic Nitrogen Fixation in Lotus japonicus Root Nodules

PubMed Central

Krusell, Lene; Krause, Katja; Ott, Thomas; Desbrosses, Guilhem; Krämer, Ute; Sato, Shusei; Nakamura, Yasukazu; Tabata, Satoshi; James, Euan K.; Sandal, Niels; Stougaard, Jens; Kawaguchi, Masayoshi; Miyamoto, Ai; Suganuma, Norio; Udvardi, Michael K.

2005-01-01

Symbiotic nitrogen fixation (SNF) by intracellular rhizobia within legume root nodules requires the exchange of nutrients between host plant cells and their resident bacteria. Little is known at the molecular level about plant transporters that mediate such exchanges. Several mutants of the model legume Lotus japonicus have been identified that develop nodules with metabolic defects that cannot fix nitrogen efficiently and exhibit retarded growth under symbiotic conditions. Map-based cloning of defective genes in two such mutants, sst1-1 and sst1-2 (for symbiotic sulfate transporter), revealed two alleles of the same gene. The gene is expressed in a nodule-specific manner and encodes a protein homologous with eukaryotic sulfate transporters. Full-length cDNA of the gene complemented a yeast mutant defective in sulfate transport. Hence, the gene was named Sst1. The sst1-1 and sst1-2 mutants exhibited normal growth and development under nonsymbiotic growth conditions, a result consistent with the nodule-specific expression of Sst1. Data from a previous proteomic study indicate that SST1 is located on the symbiosome membrane in Lotus nodules. Together, these results suggest that SST1 transports sulfate from the plant cell cytoplasm to the intracellular rhizobia, where the nutrient is essential for protein and cofactor synthesis, including nitrogenase biosynthesis. This work shows the importance of plant sulfate transport in SNF and the specialization of a eukaryotic transporter gene for this purpose. PMID:15805486

The Time Course of Name Retrieval during Multiple-Object Naming: Evidence from Extrafoveal-on-Foveal Effects

ERIC Educational Resources Information Center

Malpass, Debra; Meyer, Antje S.

2010-01-01

The goal of the study was to examine whether speakers naming pairs of objects would retrieve the names of the objects in parallel or in sequence. To this end, we recorded the speakers' eye movements and determined whether the difficulty of retrieving the name of the 2nd object affected the duration of the gazes to the 1st object. Two experiments,…

Sense or Sensibility?: How Commitment Mediates the Role of Self-Service Technology on Loyalty

NASA Astrophysics Data System (ADS)

Singh, Sangeeta; Olsen, Line Lervik

It has been well documented that employing self-service technology (SST) results in considerable cost savings but few studies have examined its impact on consumers’ behavior. We apply a well-recognized model from the field of services marketing in an SST context. We examine how the established relationships between satisfaction, affective and calculative commitments, and loyalty are affected when the service is provided through a technology interface as opposed to service personnel. We then present two alternative perspectives on the role of SST. The first is based on the predominant assumption that SST is a moderator of the relationship between customer loyalty and its drivers, while the other rests on the assumption that SST is just another context and that its role in affecting customer loyalty is mediated by drivers of loyalty. A cross-sectional study conducted in the banking industry shows that SST does not change everything. The classical model of how customers evaluate services and the predictors of loyalty are replicated in the SST setting. Interestingly, SST does not have a direct influence on loyalty by itself but its effects are mediated by commitment. However, it is the affective commitment that is more important in forming loyalty toward the service provider.

Multiscale mechanical integrity of human supraspinatus tendon in shear after elastin depletion.

PubMed

Fang, Fei; Lake, Spencer P

2016-10-01

Human supraspinatus tendon (SST) exhibits region-specific nonlinear mechanical properties under tension, which have been attributed to its complex multiaxial physiological loading environment. However, the mechanical response and underlying multiscale mechanism regulating SST behavior under other loading scenarios are poorly understood. Furthermore, little is known about the contribution of elastin to tendon mechanics. We hypothesized that (1) SST exhibits region-specific shear mechanical properties, (2) fiber sliding is the predominant mode of local matrix deformation in SST in shear, and (3) elastin helps maintain SST mechanical integrity by facilitating force transfer among collagen fibers. Through the use of biomechanical testing and multiphoton microscopy, we measured the multiscale mechanical behavior of human SST in shear before and after elastase treatment. Three distinct SST regions showed similar stresses and microscale deformation. Collagen fiber reorganization and sliding were physical mechanisms observed as the SST response to shear loading. Measures of microscale deformation were highly variable, likely due to a high degree of extracellular matrix heterogeneity. After elastase treatment, tendon exhibited significantly decreased stresses under shear loading, particularly at low strains. These results show that elastin contributes to tendon mechanics in shear, further complementing our understanding of multiscale tendon structure-function relationships. Copyright © 2016 Elsevier Ltd. All rights reserved.

Retrieving handwriting by combining word spotting and manifold ranking

NASA Astrophysics Data System (ADS)

Peña Saldarriaga, Sebastián; Morin, Emmanuel; Viard-Gaudin, Christian

2012-01-01

Online handwritten data, produced with Tablet PCs or digital pens, consists in a sequence of points (x, y). As the amount of data available in this form increases, algorithms for retrieval of online data are needed. Word spotting is a common approach used for the retrieval of handwriting. However, from an information retrieval (IR) perspective, word spotting is a primitive keyword based matching and retrieval strategy. We propose a framework for handwriting retrieval where an arbitrary word spotting method is used, and then a manifold ranking algorithm is applied on the initial retrieval scores. Experimental results on a database of more than 2,000 handwritten newswires show that our method can improve the performances of a state-of-the-art word spotting system by more than 10%.

Testing for Soluble ST2 in Heart Failure Patients: Reliability of a Point of Care Method.

PubMed

Gruson, Damien; Ferracin, Benjamin; Ahn, Sylvie A; Rousseau, Michel F

2017-01-01

Our objective was to determine soluble ST2 (sST2) concentrations in heart failure (HF) patients with a point-of-care (POCT) assay. sST2 levels were measured in 71 HF patients with both POCT and ELISA methods. The concentrations of sST2 were correlated to HF severity and to some established biomarkers of cardiovascular risk. sST2 levels measured with the ASPECT-PLUS POCT method were significantly correlated with the comparison ELISA assay (r = 0.94, p < 0.01) and were related to HF severity. Levels of sST2 measured with the POCT assay were significantly correlated to NT-proBNP (r = 0.57, p < 0.001), BNP (r = 0.75, p < 0.001), Galectin-3 (r = 0.40, p < 0.01) and PTH (1-84) (r = 0.39, p < 0.01). POCT and ELISA methods for sST2 testing were significantly correlated, and our results confirmed also the clinical reliability of the sST2 POCT assay. Furthermore, the POCT method allows a faster delivery of results to physicians.

Mechanistic prediction of fission-gas behavior during in-cell transient heating tests on LWR fuel using the GRASS-SST and FASTGRASS computer codes

DOE Office of Scientific and Technical Information (OSTI.GOV)

Rest, J; Gehl, S M

1979-01-01

GRASS-SST and FASTGRASS are mechanistic computer codes for predicting fission-gas behavior in UO/sub 2/-base fuels during steady-state and transient conditions. FASTGRASS was developed in order to satisfy the need for a fast-running alternative to GRASS-SST. Althrough based on GRASS-SST, FASTGRASS is approximately an order of magnitude quicker in execution. The GRASS-SST transient analysis has evolved through comparisons of code predictions with the fission-gas release and physical phenomena that occur during reactor operation and transient direct-electrical-heating (DEH) testing of irradiated light-water reactor fuel. The FASTGRASS calculational procedure is described in this paper, along with models of key physical processes included inmore » both FASTGRASS and GRASS-SST. Predictions of fission-gas release obtained from GRASS-SST and FASTGRASS analyses are compared with experimental observations from a series of DEH tests. The major conclusions is that the computer codes should include an improved model for the evolution of the grain-edge porosity.« less

The influence of tide on sea surface temperature in the marginal sea of northwest Pacific Ocean

NASA Astrophysics Data System (ADS)

Huang, Shih-Jen; Tsai, Yun-Chan; Ho, Chung-Ru; Lo, Yao-Tsai; Kuo, Nan-Jung

2017-10-01

Tide gauge data provided by the University of Hawaii Sea Level Center and daily sea surface temperature (SST) data from the Moderate Resolution Imaging Spectroradiometer (MODIS) product are used in this study to analyze the influence of tide on the SST in the seas of Northwestern Pacific. In the marginal region, the climatology SST is lower in the northwestern area than that in the southeastern area. In the coastal region, the SST at spring tide is higher than that at neap tide in winter, but it is lower in other seasons. In the adjacent waters of East China Sea and Yellow Sea, the SST at spring tide is higher than that at neap tide in winter and summer but it is lower in spring and autumn. In the open ocean region, the SST at spring tide is higher than that at neap tide in winter, but it is lower in other seasons. In conclusion, not only the river discharge and topography, but also tides could influence the SST variations, especially in the open ocean region.

Role of subsurface ocean in decadal climate predictability over the South Atlantic.

PubMed

Morioka, Yushi; Doi, Takeshi; Storto, Andrea; Masina, Simona; Behera, Swadhin K

2018-06-04

Decadal climate predictability in the South Atlantic is explored by performing reforecast experiments using a coupled general circulation model with two initialization schemes; one is assimilated with observed sea surface temperature (SST) only, and the other is additionally assimilated with observed subsurface ocean temperature and salinity. The South Atlantic is known to undergo decadal variability exhibiting a meridional dipole of SST anomalies through variations in the subtropical high and ocean heat transport. Decadal reforecast experiments in which only the model SST is initialized with the observation do not predict well the observed decadal SST variability in the South Atlantic, while the other experiments in which the model SST and subsurface ocean are initialized with the observation skillfully predict the observed decadal SST variability, particularly in the Southeast Atlantic. In-depth analysis of upper-ocean heat content reveals that a significant improvement of zonal heat transport in the Southeast Atlantic leads to skillful prediction of decadal SST variability there. These results demonstrate potential roles of subsurface ocean assimilation in the skillful prediction of decadal climate variability over the South Atlantic.

The new interactive CESAR

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fox, P.B.; Yatabe, M.

1987-01-01

In this report the Nuclear Criticality Safety Analytical Methods Resource Center describes a new interactive version of CESAR, a critical experiments storage and retrieval program available on the Nuclear Criticality Information System (NCIS) database at Lawrence Livermore National Laboratory. The original version of CESAR did not include interactive search capabilities. The CESAR database was developed to provide a convenient, readily accessible means of storing and retrieving code input data for the SCALE Criticality Safety Analytical Sequences and the codes comprising those sequences. The database includes data for both cross section preparation and criticality safety calculations. 3 refs., 1 tab.

New interactive CESAR

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fox, P.B.; Yatabe, M.

1987-01-01

The Nuclear Criticality Safety Analytical Methods Resource Center announces the availability of a new interactive version of CESAR, a critical experiments storage and retrieval program available on the Nuclear Criticality Information System (NCIS) data base at Lawrence Livermore National Laboratory. The original version of CESAR did not include interactive search capabilities. The CESAR data base was developed to provide a convenient, readily accessible means of storing and retrieving code input data for the SCALE criticality safety analytical sequences and the codes comprising those sequences. The data base includes data for both cross-section preparation and criticality safety calculations.

Integrated databanks access and sequence/structure analysis services at the PBIL.

PubMed

Perrière, Guy; Combet, Christophe; Penel, Simon; Blanchet, Christophe; Thioulouse, Jean; Geourjon, Christophe; Grassot, Julien; Charavay, Céline; Gouy, Manolo; Duret, Laurent; Deléage, Gilbert

2003-07-01

The World Wide Web server of the PBIL (Pôle Bioinformatique Lyonnais) provides on-line access to sequence databanks and to many tools of nucleic acid and protein sequence analyses. This server allows to query nucleotide sequence banks in the EMBL and GenBank formats and protein sequence banks in the SWISS-PROT and PIR formats. The query engine on which our data bank access is based is the ACNUC system. It allows the possibility to build complex queries to access functional zones of biological interest and to retrieve large sequence sets. Of special interest are the unique features provided by this system to query the data banks of gene families developed at the PBIL. The server also provides access to a wide range of sequence analysis methods: similarity search programs, multiple alignments, protein structure prediction and multivariate statistics. An originality of this server is the integration of these two aspects: sequence retrieval and sequence analysis. Indeed, thanks to the introduction of re-usable lists, it is possible to perform treatments on large sets of data. The PBIL server can be reached at: http://pbil.univ-lyon1.fr.

PubDNA Finder: a web database linking full-text articles to sequences of nucleic acids.

PubMed

García-Remesal, Miguel; Cuevas, Alejandro; Pérez-Rey, David; Martín, Luis; Anguita, Alberto; de la Iglesia, Diana; de la Calle, Guillermo; Crespo, José; Maojo, Víctor

2010-11-01

PubDNA Finder is an online repository that we have created to link PubMed Central manuscripts to the sequences of nucleic acids appearing in them. It extends the search capabilities provided by PubMed Central by enabling researchers to perform advanced searches involving sequences of nucleic acids. This includes, among other features (i) searching for papers mentioning one or more specific sequences of nucleic acids and (ii) retrieving the genetic sequences appearing in different articles. These additional query capabilities are provided by a searchable index that we created by using the full text of the 176 672 papers available at PubMed Central at the time of writing and the sequences of nucleic acids appearing in them. To automatically extract the genetic sequences occurring in each paper, we used an original method we have developed. The database is updated monthly by automatically connecting to the PubMed Central FTP site to retrieve and index new manuscripts. Users can query the database via the web interface provided. PubDNA Finder can be freely accessed at http://servet.dia.fi.upm.es:8080/pubdnafinder

Evaluation of nearest-neighbor methods for detection of chimeric small-subunit rRNA sequences

NASA Technical Reports Server (NTRS)

Robison-Cox, J. F.; Bateson, M. M.; Ward, D. M.

1995-01-01

Detection of chimeric artifacts formed when PCR is used to retrieve naturally occurring small-subunit (SSU) rRNA sequences may rely on demonstrating that different sequence domains have different phylogenetic affiliations. We evaluated the CHECK_CHIMERA method of the Ribosomal Database Project and another method which we developed, both based on determining nearest neighbors of different sequence domains, for their ability to discern artificially generated SSU rRNA chimeras from authentic Ribosomal Database Project sequences. The reliability of both methods decreases when the parental sequences which contribute to chimera formation are more than 82 to 84% similar. Detection is also complicated by the occurrence of authentic SSU rRNA sequences that behave like chimeras. We developed a naive statistical test based on CHECK_CHIMERA output and used it to evaluate previously reported SSU rRNA chimeras. Application of this test also suggests that chimeras might be formed by retrieving SSU rRNAs as cDNA. The amount of uncertainty associated with nearest-neighbor analyses indicates that such tests alone are insufficient and that better methods are needed.

No inter-gyre pathway for sea-surface temperature anomalies in the North Atlantic.

PubMed

Foukal, Nicholas P; Lozier, M Susan

2016-04-22

Recent Lagrangian analyses of surface drifters have questioned the existence of a surface current connecting the Gulf Stream (GS) to the subpolar gyre (SPG) and have cast doubt on the mechanism underlying an apparent pathway for sea-surface temperature (SST) anomalies between the two regions. Here we use modelled Lagrangian trajectories to determine the fate of surface GS water and satellite SST data to analyse pathways of GS SST anomalies. Our results show that only a small fraction of the surface GS water reaches the SPG, the water that does so mainly travels below the surface mixed layer, and GS SST anomalies do not propagate into the SPG on interannual timescales. Instead, the inter-gyre heat transport as part of the Atlantic Meridional Overturning Circulation must be accomplished via subsurface pathways. We conclude that the SST in the SPG cannot be predicted by tracking SST anomalies along the GS.

Comparison of children with autism spectrum disorder with and without schizophrenia spectrum traits: gender, season of birth, and mental health risk factors.

PubMed

Gadow, Kenneth D; DeVincent, Carla J

2012-11-01

Children with autism spectrum disorder (ASD) with and without co-occurring schizophrenia spectrum traits (SST) were examined for differences in co-occurring psychiatric symptoms, background characteristics, and mental health risk factors. Participating mothers and teachers completed a DSM-IV-referenced rating scale and a background questionnaire (mothers only) describing 147 children (6-12 years) with ASD. There was a clear pattern of group differences in co-occurring psychiatric symptom severity (+SST > SST-) and background characteristics. Children with impairing SST had more mental health risk factors. Girls were more likely to be classified SST according to mothers' ratings. Children born in spring-summer were more likely to be classified non-SST by teachers' ratings. Findings provide tentative evidence that SST may be a useful marker of behavioral heterogeneity within the ASD clinical phenotype.

Effect of Radiative Cooling on Cloud-SST Relationship within the Tropical Pacific Region

NASA Technical Reports Server (NTRS)

Sui, Chung-Hsiung; Ho, Chang-Hoi; Chou, Ming-Dah; Lau, Ka-Ming; Li, Xiao-Fan; Einaudi, Franco (Technical Monitor)

2000-01-01

A recent analysis found a negative correlation between the area-mean cloud amount and the corresponding mean Sea Surface Temperature (SST) within the cloudy areas. The SST-cloud relation becomes more evident when the SST contrast between warm pool and surrounding cold pool (DSST) in the tropical Pacific is stronger than normal. The above feature is related to the finding that the strength of subsidence over the cold pool is limited by radiative cooling because of its small variability. As a result, the area of radiatively-driven subsidence must expand in response to enhanced low-boundary forcing due to SST warming or enhanced basin-scale DSST. This leads to more cloud free regions and less cloudy regions. The increased ratio of cloud-free areas to cloudy areas leads to more high SST areas (>29.50C) due to enhanced solar radiation.

No inter-gyre pathway for sea-surface temperature anomalies in the North Atlantic

PubMed Central

Foukal, Nicholas P.; Lozier, M. Susan

2016-01-01

Recent Lagrangian analyses of surface drifters have questioned the existence of a surface current connecting the Gulf Stream (GS) to the subpolar gyre (SPG) and have cast doubt on the mechanism underlying an apparent pathway for sea-surface temperature (SST) anomalies between the two regions. Here we use modelled Lagrangian trajectories to determine the fate of surface GS water and satellite SST data to analyse pathways of GS SST anomalies. Our results show that only a small fraction of the surface GS water reaches the SPG, the water that does so mainly travels below the surface mixed layer, and GS SST anomalies do not propagate into the SPG on interannual timescales. Instead, the inter-gyre heat transport as part of the Atlantic Meridional Overturning Circulation must be accomplished via subsurface pathways. We conclude that the SST in the SPG cannot be predicted by tracking SST anomalies along the GS. PMID:27103496

Contribution of tropical instability waves to ENSO irregularity

NASA Astrophysics Data System (ADS)

Holmes, Ryan M.; McGregor, Shayne; Santoso, Agus; England, Matthew H.

2018-05-01

Tropical instability waves (TIWs) are a major source of internally-generated oceanic variability in the equatorial Pacific Ocean. These non-linear phenomena play an important role in the sea surface temperature (SST) budget in a region critical for low-frequency modes of variability such as the El Niño-Southern Oscillation (ENSO). However, the direct contribution of TIW-driven stochastic variability to ENSO has received little attention. Here, we investigate the influence of TIWs on ENSO using a 1/4° ocean model coupled to a simple atmosphere. The use of a simple atmosphere removes complex intrinsic atmospheric variability while allowing the dominant mode of air-sea coupling to be represented as a statistical relationship between SST and wind stress anomalies. Using this hybrid coupled model, we perform a suite of coupled ensemble forecast experiments initiated with wind bursts in the western Pacific, where individual ensemble members differ only due to internal oceanic variability. We find that TIWs can induce a spread in the forecast amplitude of the Niño 3 SST anomaly 6-months after a given sequence of WWBs of approximately ± 45% the size of the ensemble mean anomaly. Further, when various estimates of stochastic atmospheric forcing are added, oceanic internal variability is found to contribute between about 20% and 70% of the ensemble forecast spread, with the remainder attributable to the atmospheric variability. While the oceanic contribution to ENSO stochastic forcing requires further quantification beyond the idealized approach used here, our results nevertheless suggest that TIWs may impact ENSO irregularity and predictability. This has implications for ENSO representation in low-resolution coupled models.

Effects of the neuroprotective drugs somatostatin and brimonidine on retinal cell models of diabetic retinopathy.

PubMed

Beltramo, Elena; Lopatina, Tatiana; Mazzeo, Aurora; Arroba, Ana I; Valverde, Angela M; Hernández, Cristina; Simó, Rafael; Porta, Massimo

2016-12-01

Diabetic retinopathy is considered a microvascular disease, but recent evidence has underlined early involvement of the neuroretina with interactions between microvascular and neural alterations. Topical administration of somatostatin (SST), a neuroprotective molecule with antiangiogenic properties, prevents diabetes-induced retinal neurodegeneration in animals. The α 2 -adrenergic receptor agonist brimonidine (BRM) decreases vitreoretinal vascular endothelial growth factor and inhibits blood-retinal barrier breakdown in diabetic rats. However, SST and BRM effects on microvascular cells have not yet been studied. We investigated the behaviour of these drugs on the crosstalk between microvasculature and neuroretina. Expression of SST receptors 1-5 in human retinal pericytes (HRP) was checked. We subsequently evaluated the effects of diabetic-like conditions (high glucose and/or hypoxia) with/without SST/BRM on HRP survival. Endothelial cells (EC) and photoreceptors were maintained in the above conditions and their conditioned media (CM) used to culture HRP. Vice versa, HRP-CM was used on EC and photoreceptors. Survival parameters were assessed. HRP express the SST receptor 1 (SSTR1). Glucose fluctuations mimicking those occurring in diabetic subjects are more damaging for pericytes and photoreceptors than stable high glucose and hypoxic conditions. SST/BRM added to HRP in diabetic-like conditions decrease EC apoptosis. However, neither SST nor BRM changed the response of pericytes and neuroretina-vascular crosstalk under diabetic-like conditions. Retinal pericytes express SSTR1, indicating that they can be a target for SST. Exposure to SST/BRM had no adverse effects, direct or mediated by the neuroretina, suggesting that these molecules could be safely evaluated for the treatment of ocular diseases.

Impacts of SST Patterns on Rapid Intensification of Typhoon Megi (2010)

NASA Astrophysics Data System (ADS)

Kanada, Sachie; Tsujino, Satoki; Aiki, Hidenori; Yoshioka, Mayumi K.; Miyazawa, Yasumasa; Tsuboki, Kazuhisa; Takayabu, Izuru

2017-12-01

Typhoon Megi (2010), a very intense tropical cyclone with a minimum central pressure of 885 hPa, was characterized by especially rapid intensification. We investigated this intensification process by a simulation experiment using a high-resolution (0.02° × 0.02°) three-dimensional atmosphere-ocean coupled regional model. We also performed a sensitivity experiment with a time-fixed sea surface temperature (SST). The coupled model successfully simulated the minimum central pressure of Typhoon Megi, whereas the fixed SST experiment simulated an excessively low minimum central pressure of 839 hPa. The simulation results also showed a close relationship between the radial SST profiles and the rapid intensification process. Because the warm sea increased near-surface water vapor and hence the convective available potential energy, the high SST in the eye region facilitated tall and intense updrafts inside the radius of maximum wind speed and led to the start of rapid intensification. In contrast, high SST outside this radius induced local secondary updrafts that inhibited rapid intensification even if the mean SST in the core region exceeded 29.0°C. These secondary updrafts moved inward and eventually merged with the primary eyewall updrafts. Then the storm intensified rapidly when the high SST appeared in the eye region. Thus, the changes in the local SST pattern around the storm center strongly affected the rapid intensification process by modulating the radial structure of core convection. Our results also show that the use of a high-resolution three-dimensional atmosphere-ocean coupled model offers promise for improving intensity forecasts of tropical cyclones.

Modulating Effects of Mesoscale Oceanic Eddies on Sea Surface Temperature Response to Tropical Cyclones Over the Western North Pacific

NASA Astrophysics Data System (ADS)

Ma, Zhanhong; Fei, Jianfang; Huang, Xiaogang; Cheng, Xiaoping

2018-01-01

The impact of mesoscale oceanic eddies on the temporal and spatial characteristics of sea surface temperature (SST) response to tropical cyclones is investigated in this study based on composite analysis of cyclone-eddy interactions over the western North Pacific. The occurrence times of maximum cooling, recovery time, and spatial patterns of SST response are specially evaluated. The influence of cold-core eddies (CCEs) renders the mean occurrence time of maximum SST cooling to become about half a day longer than that in eddy-free condition, while warm-core eddies (WCEs) have little effect on this facet. The recovery time of SST cooling also takes longer in presence of CCEs, being overall more pronounced for stronger or slower tropical cyclones. The effect of WCEs on the recovery time is again not significant. The modulation of maximum SST decrease by WCEs for category 2-5 storms is found to be remarkable in the subtropical region but not evident in the tropical region, while the role of CCEs is remarkable in both regions. The CCEs are observed to change the spatial characteristics of SST response, with enhanced SST decrease initially at the right side of storm track. During the recovery period the strengthened SST cooling by CCEs propagates leftward gradually, with a feature similar as both the westward-propagating eddies and the recovery of cold wake. These results underscore the importance of resolving mesoscale oceanic eddies in coupled numerical models to improve the prediction of storm-induced SST response.

Biweekly Sea Surface Temperature over the South China Sea and its association with the Western North Pacific Summer Monsoon

NASA Astrophysics Data System (ADS)

Vaid, B. H.

2017-02-01

The association of the biweekly intraseasonal (BWI) oscillation in the Sea Surface Temperature (SST) over the South China Sea (SCS) and the Western North Pacific Summer Monsoon is authenticated using version 4 the Tropical Rainfall Measuring Mission Microwave Imager data (SST and rain) and heat fluxes from Ocean Atmosphere Flux project data during 1998-2012. The results suggest that the SCS involves ocean-atmosphere coupling on biweekly timescales. The positive biweekly SST anomalies lead the rain anomalies over the SCS by 3 days, with a significant correlation coefficient ( r = 0.6, at 99 % significance levels) between the SST-rain anomalies. It is evident from lead/lag correlation between biweekly SST and zonal wind shear that warm ocean surface induced by wind shear may contribute to a favorable condition of the convective activity over the SCS. The present study suggests that ocean-to-atmospheric processes induced by the BWI oscillation in the SCS SST results in enhanced sea level pressure and surface shortwave radiation flux during the summer monsoon. Besides, it is observed that the SCS BWI oscillation in the changes of SST causes a feedback in the atmosphere by modifying the atmospheric instability. This suggests that the active/break biweekly cycle of the SST over the SCS is related by sea level pressure, surface heat fluxes and atmospheric instability. The potential findings here indicate that the biweekly SST over the SCS play an important role in the eastward and the southward propagation of the biweekly anomalies in the Western North Pacific.

Asymmetric Response of the Equatorial Pacific SST to Climate Warming and Cooling

DOE Office of Scientific and Technical Information (OSTI.GOV)

Liu, Fukai; Luo, Yiyong; Lu, Jian

The response of the equatorial Pacific Ocean to heat fluxes of equal amplitude but opposite sign is investigated using the Community Earth System Model (CESM). Results show a strong asymmetry in SST changes. In the eastern equatorial Pacific (EEP), the warming responding to the positive forcing exceeds the cooling to the negative forcing; while in the western equatorial Pacific (WEP), it is the other way around and the cooling surpasses the warming. This leads to a zonal dipole asymmetric structure, with positive values in the east and negative values in the west. A surface heat budget analysis suggests that themore » SST asymmetry is mainly resulted from the oceanic horizontal advection and vertical entrainment, with both of their linear and nonlinear components playing a role. For the linear component, its change appears to be more significant over the EEP (WEP) in the positive (negative) forcing scenario, favoring the seesaw pattern of the SST asymmetry. For the nonlinear component, its change acts to warm (cool) the EEP (WEP) in both scenarios, also favorable for the development of the SST asymmetry. Additional experiments with a slab ocean confirm the dominant role of ocean dynamical processes for this SST asymmetry. The net surface heat flux, in contrast, works to reduce the SST asymmetry through its shortwave radiation and latent heat flux components, with the former being related to the nonlinear relationship between SST and convection, and the latter being attributable to Newtonian damping and air-sea stability effects. The suppressing effect of shortwave radiation on SST asymmetry is further verified by partially coupled overriding experiments.« less

Asymmetric response of the equatorial Pacific SST to climate warming and cooling

NASA Astrophysics Data System (ADS)

Luo, Y.; Liu, F.; Lu, J.

2017-12-01

The response of the equatorial Pacific Ocean to heat fluxes of equal amplitude but opposite sign is investigated using the Community Earth System Model (CESM). Results show a strong asymmetry in SST changes. In the eastern equatorial Pacific (EEP), the warming responding to the positive forcing exceeds the cooling to the negative forcing; while in the western equatorial Pacific (WEP), it is the other way around and the cooling surpasses the warming. This leads to a zonal dipole asymmetric structure, with positive values in the east and negative values in the west. A surface heat budget analysis suggests that the SST asymmetry is mainly resulted from the oceanic horizontal advection and vertical entrainment, with both of their linear and nonlinear components playing a role. For the linear component, its change appears to be more significant over the EEP (WEP) in the positive (negative) forcing scenario, favoring the seesaw pattern of the SST asymmetry. For the nonlinear component, its change acts to warm (cool) the EEP (WEP) in both scenarios, also favorable for the development of the SST asymmetry. Additional experiments with a slab ocean confirm the dominant role of ocean dynamical processes for this SST asymmetry. The net surface heat flux, in contrast, works to reduce the SST asymmetry through its shortwave radiation and latent heat flux components, with the former being related to the nonlinear relationship between SST and convection, and the latter being attributable to Newtonian damping and air-sea stability effects. The suppressing effect of shortwave radiation on SST asymmetry is further verified by partially coupled overriding experiments.

Simulation of Rainfall Variability Over West Africa

NASA Astrophysics Data System (ADS)

Bader, J.; Latif, M.

The impact of sea surface temperature (SST) and vegetation on precipitation over West Africa is investigated with the atmospheric general circulation model ECHAM4.x/T42. Ensemble experiments -driven with observed SST- show that At- lantic SST has a significant influence on JJA precipitation over West Africa. Four- teen experiments were performed in which the climatological SST was enhanced or decreased by one Kelvin in certain ocean areas. Changing SST in the eastern tropi- cal Atlantic only caused significant changes along the Guinea Coast, with a positive SSTA increasing rainfall and a negative reducing it. The response was nearly linear. Changing SST in other ocean areas caused significant changes over West Africa, es- pecially in the Sahel area. The response is found to be non linear, with only negative SSTA leading to significant reduction in Sahel rainfall. Also, the impact of the SSTAs from the different ocean regions was not additive with respect to the rainfall. Four simulations with a coupled model (the simple dynamic vegetation model (SVege) and the ECHAM4-AGCM were coupled) were also performed, driven with observed SST from 1945 to 1998. The standard ECHAM-AGCM -forced by the same observed SST- was able to reproduce the drying trend from the fifties to the mid-eighties in the Sahel, but failed to mirror the magnitude of the rainfall anomalies. The coupled model was not only able to reproduce this drying trend, but was also able to better reproduce the amplitudes of the rainfall anomalies. The dynamic vegetation acted like an amplifier, increasing the SST induced rainfall anomalies.

Retrieval of Surface Lambert Albedos and Aerosols Optical Depths Using OMEGA Near-IR EPF Observations of Mars

NASA Astrophysics Data System (ADS)

Vincendon, M.; Langevin, Y.; Poulet, F.; Bibring, J.-P.; Gondet, B.

2007-03-01

We have analyzed five EPF sequences acquired by OMEGA/Mars Express in the near-IR over ice-free and ice-covered surfaces to retrieve simultaneously the Lambert albedo of the surface and the optical depth of aerosols.

Remote SST Forcing and Local Land-Atmosphere Moisture Coupling as Drivers of Amazon Temperature and Carbon Cycle Variability

NASA Astrophysics Data System (ADS)

Levine, P. A.; Xu, M.; Chen, Y.; Randerson, J. T.; Hoffman, F. M.

2017-12-01

Interannual variability of climatic conditions in the Amazon rainforest is associated with El Niño-Southern Oscillation (ENSO) and ocean-atmosphere interactions in the North Atlantic. Sea surface temperature (SST) anomalies in these remote ocean regions drive teleconnections with Amazonian surface air temperature (T), precipitation (P), and net ecosystem production (NEP). While SST-driven NEP anomalies have been primarily linked to T anomalies, it is unclear how much the T anomalies result directly from SST forcing of atmospheric circulation, and how much result indirectly from decreases in precipitation that, in turn, influence surface energy fluxes. Interannual variability of P associated with SST anomalies lead to variability in soil moisture (SM), which would indirectly affect T via partitioning of turbulent heat fluxes between the land surface and the atmosphere. To separate the direct and indirect influence of the SST signal on T and NEP, we performed a mechanism-denial experiment to decouple SST and SM anomalies. We used the Accelerated Climate Modeling for Energy (ACMEv0.3), with version 5 of the Community Atmosphere Model and version 4.5 of the Community Land Model. We forced the model with observed SSTs from 1982-2016. We found that SST and SM variability both contribute to T and NEP anomalies in the Amazon, with relative contributions depending on lag time and location within the Amazon basin. SST anomalies associated with ENSO drive most of the T variability at shorter lag times, while the ENSO-driven SM anomalies contribute more to T variability at longer lag times. SM variability and the resulting influence on T anomalies are much stronger in the eastern Amazon than in the west. Comparing modeled T with observations demonstrate that SST alone is sufficient for simulating the correct timing of T variability, but SM anomalies are necessary for simulating the correct magnitude of the T variability. Modeled NEP indicated that variability in carbon fluxes results from both SST and SM anomalies. As with T, SM anomalies affect NEP at a much longer lag time than SST anomalies. These results highlight the role of land-atmosphere coupling in driving climate variability within the Amazon, and suggest that land atmospheric coupling may amplify and delay carbon cycle responses to ocean-atmosphere teleconnections.

DOTA-Derivatives of Octreotide Dicarba-Analogs with High Affinity for Somatostatin sst2,5 Receptors.

PubMed

Pratesi, Alessandro; Ginanneschi, Mauro; Lumini, Marco; Papini, Anna M; Novellino, Ettore; Brancaccio, Diego; Carotenuto, Alfonso

2017-01-01

In vivo somatostatin receptor scintigraphy is a valuable method for the visualization of human endocrine tumors and their metastases. In fact, peptide ligands of somatostatin receptors (sst's) conjugated with chelating agents are in clinical use. We have recently developed octreotide dicarba-analogs, which show interesting binding profiles at sst's. In this context, it was mandatory to explore the possibility that our analogs could maintain their activity also upon conjugation with DOTA. In this paper, we report and discuss the synthesis, binding affinity and conformational preferences of three DOTA-conjugated dicarba-analogs of octreotide. Interestingly, two conjugated analogs exhibited nanomolar affinities on sst 2 and sst 5 somatostatin receptor subtypes.

Interannual variability in stratiform cloudiness and sea surface temperature

NASA Technical Reports Server (NTRS)

Norris, Joel R.; Leovy, Conway B.

1994-01-01

Marine stratiform cloudiness (MSC)(stratus, stratocumulus, and fog) is widespread over subtropical oceans west of the continents and over midlatitude oceans during summer, the season when MSC has maximum influence on surface downward radiation and is most influenced by boundary-layer processes. Long-term datasets of cloudiness and sea surface teperature (SST) from surface observations from 1952 to 1981 are used to examine interannual variations in MSC and SST. Linear correlations of anomalies in seasonal MSC amount with seasonal SST anomalies are negative and significant in midlatitude and eastern subtropical oceans, especially during summer. Significant negative correlations between SST and nimbostratus and nonprecipitating midlevel cloudiness are also observed at midlatitudes during summer, suggesting that summer storm tracks shift from year to year following year-to-year meridional shifts in the SST gradient. Over the 30-yr period, there are significant upward trends in MSC amount over the northern midlatitude oceans and a significant downward trend off the coast of California. The highest correlations and trends occur where gradients in MSC and SST are strongest. During summer, correlations between SST and MSC anomalies peak at zero lag in midlatitudes where warm advection prevails, but SST lags MSC in subtropical regions where cold advection predominates. This difference is attributed to a tendency for anomalies in latent heat flux to compensate anomalies in surface downward radiation in warm advection regions but not in cold advection regions.

Hurricane destructive power predictions based on historical storm and sea surface temperature data.

PubMed

Bogen, Kenneth T; Jones, Edwin D; Fischer, Larry E

2007-12-01

Forecasting destructive hurricane potential is complicated by substantial, unexplained intraannual variation in storm-specific power dissipation index (PDI, or integrated third power of wind speed), and interannual variation in annual accumulated PDI (APDI). A growing controversy concerns the recent hypothesis that the clearly positive trend in North Atlantic Ocean (NAO) sea surface temperature (SST) since 1970 explains increased hurricane intensities over this period, and so implies ominous PDI and APDI growth as global warming continues. To test this "SST hypothesis" and examine its quantitative implications, a combination of statistical and probabilistic methods were applied to National Hurricane Center HURDAT best-track data on NAO hurricanes during 1880-2002, and corresponding National Oceanographic and Atmospheric Administration Extended Reconstruction SST estimates. Notably, hurricane behavior was compared to corresponding hurricane-specific (i.e., spatiotemporally linked) SST; previous similar comparisons considered only SST averaged over large NAO regions. Contrary to the SST hypothesis, SST was found to vary in a monthly pattern inconsistent with that of corresponding PDI, and to be at best weakly associated with PDI or APDI despite strong correlation with corresponding mean latitude (R(2)= 0.55) or with combined mean location and a approximately 90-year periodic trend (R(2)= 0.70). Over the last century, the lower 75% of APDIs appear randomly sampled from a nearly uniform distribution, and the upper 25% of APDIs from a nearly lognormal distribution. From the latter distribution, a baseline (SST-independent) stochastic model was derived predicting that over the next half century, APDI will not likely exceed its maximum value over the last half century by more than a factor of 1.5. This factor increased to 2 using a baseline model modified to assume SST-dependence conditioned on an upper bound of the increasing NAO SST trend observed since 1970. An additional model was developed that predicts PDI statistics conditional on APDI. These PDI and APDI models can be used to estimate upper bounds on indices of hurricane power likely to be realized over the next century, under divergent assumptions regarding SST influence.

The integrated value of sST2 and global longitudinal strain in the early stratification of patients with severe aortic valve stenosis: a translational imaging approach.

PubMed

Fabiani, Iacopo; Conte, Lorenzo; Pugliese, Nicola Riccardo; Calogero, Enrico; Barletta, Valentina; Di Stefano, Rossella; Santoni, Tatiana; Scatena, Cristian; Bortolotti, Uberto; Naccarato, Antonio Giuseppe; Petronio, Anna Sonia; Di Bello, Vitantonio

2017-12-01

Aortic valve stenosis (AVS) is associated with significant myocardial fibrosis (MF). Global longitudinal strain (GLS) is a sensible indicator of systolic dysfunction. ST2 is a member of the interleukin (IL)-1 receptor family and a modulator of hypertrophic and fibrotic responses. We aimed at assessing: (a) the association between adverse LV remodeling, LV functional parameters (including GLS) and sST2 level. (b) The association between MF (detected by endo-myocardial biopsy) and sST2 in patients with AVS undergoing surgical valve replacement. Twenty-two patients with severe AVS and preserved EF underwent aortic valve replacement. They performed laboratory analysis, including serum ST2 (sST2), echocardiography and inter-ventricular septum biopsy to assess MF (%). We included ten controls for comparison. Compared to controls, patients showed higher sST2 levels (p < 0.0001). sST2 showed correlation with Age (r = 0.58; p = 0.0004), E/e' average (r = 0.58; p = 0.0007), GLS (r = 0.61; p = 0.0002), LAVi (r = 0.51; p = 0.003), LVMi (r = 0.43; p = 0.01), sPAP (r = 0.36; p = 0.04) and SVi (r = -0.47; p < 0.005). No correlation was found between MF and sST2. At ROC analysis, a sST2 ≥ 284 ng/mL had the best accuracy to discriminate controls from patients with impaired GLS, i.e. GLS ≤ 17% (AUC 0.80; p = 0.003; sensitivity 95%; specificity 83%) and increased E/e' average (AUC 0.87; p = 0.0001; sensitivity 96%; specificity 74%). At multivariate regression analysis GLS resulted the only independent predictor of sST2 levels (R 2  = 0.35; p =  0.0004). Patients with severe AVS present elevated sST2 levels. LV GLS resulted the only independent predictor of sST2 levels.

Response of the global surface ozone distribution to Northern Hemisphere sea surface temperature changes: implications for long-range transport

NASA Astrophysics Data System (ADS)

Yi, Kan; Liu, Junfeng; Ban-Weiss, George; Zhang, Jiachen; Tao, Wei; Cheng, Yanli; Tao, Shu

2017-07-01

The response of surface ozone (O3) concentrations to basin-scale warming and cooling of Northern Hemisphere oceans is investigated using the Community Earth System Model (CESM). Idealized, spatially uniform sea surface temperature (SST) anomalies of ±1 °C are individually superimposed onto the North Pacific, North Atlantic, and North Indian oceans. Our simulations suggest large seasonal and regional variability in surface O3 in response to SST anomalies, especially in the boreal summer. The responses of surface O3 associated with basin-scale SST warming and cooling have similar magnitude but are opposite in sign. Increasing the SST by 1 °C in one of the oceans generally decreases the surface O3 concentrations from 1 to 5 ppbv. With fixed emissions, SST increases in a specific ocean basin in the Northern Hemisphere tend to increase the summertime surface O3 concentrations over upwind regions, accompanied by a widespread reduction over downwind continents. We implement the integrated process rate (IPR) analysis in CESM and find that meteorological O3 transport in response to SST changes is the key process causing surface O3 perturbations in most cases. During the boreal summer, basin-scale SST warming facilitates the vertical transport of O3 to the surface over upwind regions while significantly reducing the vertical transport over downwind continents. This process, as confirmed by tagged CO-like tracers, indicates a considerable suppression of intercontinental O3 transport due to increased tropospheric stability at lower midlatitudes induced by SST changes. Conversely, the responses of chemical O3 production to regional SST warming can exert positive effects on surface O3 levels over highly polluted continents, except South Asia, where intensified cloud loading in response to North Indian SST warming depresses both the surface air temperature and solar radiation, and thus photochemical O3 production. Our findings indicate a robust linkage between basin-scale SST variability and continental surface O3 pollution, which should be considered in regional air quality management.

Assessing the Contribution of Sea Surface Temperature and Salinity to Coral δ18O using a Weighted Forward Model

NASA Astrophysics Data System (ADS)

Horlick, K. A.; Thompson, D. M.; Anderson, D. M.

2015-12-01

The isotopic ratio of 16O/18O (δ18O) in coral carbonate skeletons is a robust, high-resolution proxy for sea surface temperature (SST) and sea surface salinity (SSS) variability predating the instrumental record. Although SST and δ18O-water (correlated to SSS) variability both contribute to the δ18O signal in the coral carbonate archive, the paucity and limited temporal span of SST and SSS instrumental observations limit the ability to differentiate respective SST and SSS contribution to each δ18O record. From instrumental datasets such as HadISST v.3, ERSST, SODA, and Delcroix (2011), we forward model the δ18O ("pseudoproxy") signal using the linear bivariate forward model from Thompson 2011 ("pseudoproxy"= a1(SST)+a2(SSS)). By iteratively weighting (between 0 and 1 by 0.005) the relative contribution of SST and SSS terms to the δ18O "pseudoproxy" following Gorman et al. 2012 method, we derive the percent contributions of SST and SSS to δ18O at each site based on the weights that produce the optimal correlation to the observed coral δ18O signal. A Monte Carlo analysis of error propagation in the weighted and unweighted pseudoproxy time series was used to determine how well the weighted and unweighted forward models captured observed δ18O variance. Across the south-western Pacific (40 sites) we found that SST contributes from less than 8 to more than 78% of the variance. This work builds upon this simple forward model of coral δ18O and improves our understanding of potential sources of differences in the observed and forward modeled δ18O variability. These results may also improve SST and SSS reconstructions from corals by highlighting the reef areas whose coral δ18O signal is most heavily influenced by SST and SSS respectively. Using an inverse approach, creating a transfer function, local SST and SSS could also be reconstructed based on the site-specific weights and observed coral δ18O time series.

Cry-Bt identifier: a biological database for PCR detection of Cry genes present in transgenic plants.

PubMed

Singh, Vinay Kumar; Ambwani, Sonu; Marla, Soma; Kumar, Anil

2009-10-23

We describe the development of a user friendly tool that would assist in the retrieval of information relating to Cry genes in transgenic crops. The tool also helps in detection of transformed Cry genes from Bacillus thuringiensis present in transgenic plants by providing suitable designed primers for PCR identification of these genes. The tool designed based on relational database model enables easy retrieval of information from the database with simple user queries. The tool also enables users to access related information about Cry genes present in various databases by interacting with different sources (nucleotide sequences, protein sequence, sequence comparison tools, published literature, conserved domains, evolutionary and structural data). http://insilicogenomics.in/Cry-btIdentifier/welcome.html.

The Ecosystem of Information Retrieval

ERIC Educational Resources Information Center

Rodriguez-Munoz, Jose-Vicente; Martinez-Mendez, Francisco-Javier; Pastor-Sanchez, Juan-Antonio

2012-01-01

Introduction: This paper presents an initial proposal for a formal framework that, by studying the metric variables involved in information retrieval, can establish the sequence of events involved and how to perform it. Method: A systematic approach from the equations of Shannon and Weaver to establish the decidability of information retrieval…

Somatostatin protects photoreceptor cells against high glucose-induced apoptosis.

PubMed

Arroba, Ana I; Mazzeo, Aurora; Cazzoni, Daniele; Beltramo, Elena; Hernández, Cristina; Porta, Massimo; Simó, Rafael; Valverde, Ángela M

2016-01-01

Many cellular and molecular studies in experimental animals and early retinal function tests in patients with diabetic retinopathy (DR) have shown that retinal neurodegeneration is an early event in the pathogenesis of the disease. Somatostatin (SST) is one of the most important neuroprotective factors synthesized by the retina: SST levels are decreased in parallel to retinal neurodegeneration in early stages of DR. In this study, we characterized the induction of apoptosis (programmed cell death) in a 661W photoreceptor-like cell line cultured under high glucose (HG) conditions and the effect of SST. A 661W photoreceptor-like cell line and retinal explants from 10-week-old male C57BL/6 mice were cultured under HG conditions and treated with SST. Hyperglycemia significantly reduced the cellular viability by increasing the percentage of apoptotic cells, and this effect was ameliorated by SST (p˂0.05). Activation of caspase-8 by hyperglycemia was found in the 661W cells and retinal explants and decreased in the presence of SST (p˂0.05). Moreover, we detected activation of calpain-2 associated with hyperglycemia-induced cell death, as well as increased protein tyrosine phosphatase 1B (PTP1B) protein levels; both had a pattern of cleavage that was absent in the presence of SST (p˂0.05). Treatment of the 661W cells and retinal explants with SST for 24 h increased the phosphorylation of type 1 insulin-like growth factor receptor (IGF-IR; tyrosine 1165/1166) and protein kinase B (Akt; serine 473), suggesting this survival signaling is activated in the neuroretina by SST (p˂0.05). This study has provided new mechanistic insights first into the involvement of calpain-2 and PTP1B in the loss of cell survival and increased caspase-8-dependent apoptosis induced by hyperglycemia in photoreceptor cells and second, on the protective effect of SST against apoptosis by the enhancement of IGF-IR-mediated Akt phosphorylation.

Somatostatin protects photoreceptor cells against high glucose–induced apoptosis

PubMed Central

Mazzeo, Aurora; Cazzoni, Daniele; Beltramo, Elena; Hernández, Cristina; Porta, Massimo; Simó, Rafael; Valverde, Ángela M.

2016-01-01

Purpose Many cellular and molecular studies in experimental animals and early retinal function tests in patients with diabetic retinopathy (DR) have shown that retinal neurodegeneration is an early event in the pathogenesis of the disease. Somatostatin (SST) is one of the most important neuroprotective factors synthesized by the retina: SST levels are decreased in parallel to retinal neurodegeneration in early stages of DR. In this study, we characterized the induction of apoptosis (programmed cell death) in a 661W photoreceptor-like cell line cultured under high glucose (HG) conditions and the effect of SST. Methods A 661W photoreceptor-like cell line and retinal explants from 10-week-old male C57BL/6 mice were cultured under HG conditions and treated with SST. Results Hyperglycemia significantly reduced the cellular viability by increasing the percentage of apoptotic cells, and this effect was ameliorated by SST (p˂0.05). Activation of caspase-8 by hyperglycemia was found in the 661W cells and retinal explants and decreased in the presence of SST (p˂0.05). Moreover, we detected activation of calpain-2 associated with hyperglycemia-induced cell death, as well as increased protein tyrosine phosphatase 1B (PTP1B) protein levels; both had a pattern of cleavage that was absent in the presence of SST (p˂0.05). Treatment of the 661W cells and retinal explants with SST for 24 h increased the phosphorylation of type 1 insulin-like growth factor receptor (IGF-IR; tyrosine 1165/1166) and protein kinase B (Akt; serine 473), suggesting this survival signaling is activated in the neuroretina by SST (p˂0.05). Conclusions This study has provided new mechanistic insights first into the involvement of calpain-2 and PTP1B in the loss of cell survival and increased caspase-8-dependent apoptosis induced by hyperglycemia in photoreceptor cells and second, on the protective effect of SST against apoptosis by the enhancement of IGF-IR-mediated Akt phosphorylation. PMID:28050125

Interdecadal Change in SST Anomalies Associated with Winter Rainfall over South China

NASA Astrophysics Data System (ADS)

Liantong, Z.

2012-04-01

The present study investigates the interdecadal change in winter (January-February-March, or "JFM") rainfall over South China and in South China JFM rainfall-sea surface temperature (SST) relationship by using station observations for the period of 1958-2002, the Met Office Hadley Center's SST data for the period of 1900-2008, and the ERA-40 re-analysis for the period of 1958-2002. It is found that the relationship between South China JFM rainfall and SST experienced an obvious interdecadal change around the year 1978. The analyses show that the JFM rainfall anomalies during 1960-1977 and 1978-2002 were closely associated with the South China Sea (SCS) SST and El Niño-Southern Oscillation (ENSO), respectively. Moreover, southwesterly anomalies at 700 hPa dominate over the South China Sea for positive SCS SST anomaly years during 1960-1977, and for El Niño years during 1978-2002, respectively. These wind anomalies, which are associated with the enhancement of the western Pacific subtropical high, transport more moisture into South China, favoring increases in rainfall. KEY WORDS: ENSO; SCS SST; South China winter rainfall, western Pacific subtropical high.

Identifying and Investigating the Late-1960s Interhemispheric SST Shift

NASA Astrophysics Data System (ADS)

Friedman, A. R.; Lee, S. Y.; Liu, Y.; Chiang, J. C. H.

2014-12-01

The global north-south interhemispheric sea surface temperature (SST) difference experienced a pronounced and rapid decrease in the late 1960s, which has been linked to drying in the Sahel, South Asia, and East Asia. However, some basic questions about the interhemispheric SST shift remain unresolved, including its scale and whether the constituent changes in different basins were coordinated. In this study, we systematically investigate the spatial and temporal behavior of the late-1960s interhemispheric SST shift using ocean surface and subsurface observations. We also evaluate potential mechanisms using control and specific-forcing CMIP5 simulations. Using a regime shift detection technique, we identify the late-1960s shift as the most prominent in the historical observational SST record. We additionally examine the corresponding changes in upper-ocean heat content and salinity associated with the shift. We find that there were coordinated upper-ocean cooling and freshening in the subpolar North Atlantic, the region of the largest-magnitude SST decrease during the interhemispheric shift. These upper-ocean changes correspond to a weakened North Atlantic thermohaline circulation (THC). However, the THC decrease does not fully account for the rapid global interhemispheric SST shift, particularly the warming in the extratropical Southern Hemisphere.

A prospective cohort study of digital cushion and corium thickness. Part 1: Associations with body condition, lesion incidence, and proximity to calving.

PubMed

Newsome, R F; Green, M J; Bell, N J; Bollard, N J; Mason, C S; Whay, H R; Huxley, J N

2017-06-01

Claw horn disruption lesions (CHDL) are a major cause of lameness in dairy cattle and are likely a result of excessive forces being applied to the germinal epithelium that produces the claw horn. The digital cushion is a connective tissue structure, containing depots of adipose tissue, that sits beneath the distal phalanx and has been shown to be thicker in fatter cows. Body condition score (BCS) loss is a risk factor for CHDL, and one possible explanation is that fat is mobilized from the digital cushion during negative energy balance, causing the digital cushion to thin and lose force-dissipating capacity, leading to disruption of claw horn growth. This prospective cohort study investigated the association between measures of body fat and sole soft tissue (SST) thickness (a combined measure of the corium and digital cushion beneath the distal phalanx) in a longitudinal manner. The SST of 179 cows in 2 high-yielding dairy herds were measured at 5 assessment points between 8 wk before and 35 wk postcalving. The BCS, back fat thickness (BFT), and lesion incidence were recorded. Data were analyzed in a 4-level mixed effects regression model, with the outcome being SST thickness beneath the flexor tuberosity of the distal phalanx. Data from 827 assessment points were available for analysis. The overall mean of SST was 4.99 mm (standard deviation: 0.95). The SST was thickest 8 wk before calving (5.22 mm, standard deviation: 0.91) and thinnest 1 wk postcalving (4.68 mm, standard deviation: 0.87), suggesting an effect of calving on SST. The BFT was positively correlated with SST in the model with a small effect size (a 10 mm decrease in BFT corresponded with a 0.13 mm decrease in SST), yet the nadir of BFT was 11.0 mm at 9 to 17 wk postcalving (when SST was ∼4.95 mm), rather than occurring with the nadir of SST immediately after calving. The SST also varied with other variables [e.g., cows that developed a sole ulcer or severe sole hemorrhage during the study had thinner SST (-0.24 mm)], except when a sole ulcer was present, when it was thicker (+0.53 mm). Cows that developed lesions had a thinner digital cushion before the lesion occurrence, which became thickened with sole ulcer presence, perhaps representing inflammation. Furthermore, although BFT was correlated with SST over time, SST may also have been influenced by other factors such as integrity of the suspensory apparatus, which could have a major effect on CHDL. Measures of body fat likely contributed to having thin SST, but other factors including calving, herd, and lesion presence also had an effect. The Authors. Published by the Federation of Animal Science Societies and Elsevier Inc. on behalf of the American Dairy Science Association®. This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/3.0/).

Research on MMC-SST Oriented AC/DC Distribution System

NASA Astrophysics Data System (ADS)

Xie, Xifeng; Shi, Hua; Zuo, Jianglin; Zhang, Zhigang

2018-01-01

A modular multilevel converter-solid state transformer (MMC-SST) oriented AC/DC Distribution System is designed. Firstly, the topology structure is introduced, MMC is adopted in the input stage, multiple DC-DC converters are adopted in the isolation stage, and a Three-Phase Four-Leg inverter is adopted in the output stage. Then, the control strategy is analysed. Finally, simulation model and an experimental prototype of MMC-SST are built, simulation and experimental results show that topology and control strategy of MMC-SST are feasible.

Sequence Search and Comparative Genomic Analysis of SUMO-Activating Enzymes Using CoGe.

PubMed

Carretero-Paulet, Lorenzo; Albert, Victor A

2016-01-01

The growing number of genome sequences completed during the last few years has made necessary the development of bioinformatics tools for the easy access and retrieval of sequence data, as well as for downstream comparative genomic analyses. Some of these are implemented as online platforms that integrate genomic data produced by different genome sequencing initiatives with data mining tools as well as various comparative genomic and evolutionary analysis possibilities.Here, we use the online comparative genomics platform CoGe ( http://www.genomevolution.org/coge/ ) (Lyons and Freeling. Plant J 53:661-673, 2008; Tang and Lyons. Front Plant Sci 3:172, 2012) (1) to retrieve the entire complement of orthologous and paralogous genes belonging to the SUMO-Activating Enzymes 1 (SAE1) gene family from a set of species representative of the Brassicaceae plant eudicot family with genomes fully sequenced, and (2) to investigate the history, timing, and molecular mechanisms of the gene duplications driving the evolutionary expansion and functional diversification of the SAE1 family in Brassicaceae.

Complete mitochondrial genome sequence of a Middle Pleistocene cave bear reconstructed from ultrashort DNA fragments.

PubMed

Dabney, Jesse; Knapp, Michael; Glocke, Isabelle; Gansauge, Marie-Theres; Weihmann, Antje; Nickel, Birgit; Valdiosera, Cristina; García, Nuria; Pääbo, Svante; Arsuaga, Juan-Luis; Meyer, Matthias

2013-09-24

Although an inverse relationship is expected in ancient DNA samples between the number of surviving DNA fragments and their length, ancient DNA sequencing libraries are strikingly deficient in molecules shorter than 40 bp. We find that a loss of short molecules can occur during DNA extraction and present an improved silica-based extraction protocol that enables their efficient retrieval. In combination with single-stranded DNA library preparation, this method enabled us to reconstruct the mitochondrial genome sequence from a Middle Pleistocene cave bear (Ursus deningeri) bone excavated at Sima de los Huesos in the Sierra de Atapuerca, Spain. Phylogenetic reconstructions indicate that the U. deningeri sequence forms an early diverging sister lineage to all Western European Late Pleistocene cave bears. Our results prove that authentic ancient DNA can be preserved for hundreds of thousand years outside of permafrost. Moreover, the techniques presented enable the retrieval of phylogenetically informative sequences from samples in which virtually all DNA is diminished to fragments shorter than 50 bp.

Complete mitochondrial genome sequence of a Middle Pleistocene cave bear reconstructed from ultrashort DNA fragments

PubMed Central

Dabney, Jesse; Knapp, Michael; Glocke, Isabelle; Gansauge, Marie-Theres; Weihmann, Antje; Nickel, Birgit; Valdiosera, Cristina; García, Nuria; Pääbo, Svante; Arsuaga, Juan-Luis; Meyer, Matthias

2013-01-01

Although an inverse relationship is expected in ancient DNA samples between the number of surviving DNA fragments and their length, ancient DNA sequencing libraries are strikingly deficient in molecules shorter than 40 bp. We find that a loss of short molecules can occur during DNA extraction and present an improved silica-based extraction protocol that enables their efficient retrieval. In combination with single-stranded DNA library preparation, this method enabled us to reconstruct the mitochondrial genome sequence from a Middle Pleistocene cave bear (Ursus deningeri) bone excavated at Sima de los Huesos in the Sierra de Atapuerca, Spain. Phylogenetic reconstructions indicate that the U. deningeri sequence forms an early diverging sister lineage to all Western European Late Pleistocene cave bears. Our results prove that authentic ancient DNA can be preserved for hundreds of thousand years outside of permafrost. Moreover, the techniques presented enable the retrieval of phylogenetically informative sequences from samples in which virtually all DNA is diminished to fragments shorter than 50 bp. PMID:24019490

GenBank.

PubMed

Benson, Dennis A; Karsch-Mizrachi, Ilene; Lipman, David J; Ostell, James; Wheeler, David L

2007-01-01

GenBank (R) is a comprehensive database that contains publicly available nucleotide sequences for more than 240 000 named organisms, obtained primarily through submissions from individual laboratories and batch submissions from large-scale sequencing projects. Most submissions are made using the web-based BankIt or standalone Sequin programs and accession numbers are assigned by GenBank staff upon receipt. Daily data exchange with the EMBL Data Library in Europe and the DNA Data Bank of Japan ensures worldwide coverage. GenBank is accessible through NCBI's retrieval system, Entrez, which integrates data from the major DNA and protein sequence databases along with taxonomy, genome, mapping, protein structure and domain information, and the biomedical journal literature via PubMed. BLAST provides sequence similarity searches of GenBank and other sequence databases. Complete bimonthly releases and daily updates of the GenBank database are available by FTP. To access GenBank and its related retrieval and analysis services, begin at the NCBI Homepage (www.ncbi.nlm.nih.gov).

GenBank.

PubMed

Benson, Dennis A; Karsch-Mizrachi, Ilene; Lipman, David J; Ostell, James; Wheeler, David L

2005-01-01

GenBank is a comprehensive database that contains publicly available DNA sequences for more than 165,000 named organisms, obtained primarily through submissions from individual laboratories and batch submissions from large-scale sequencing projects. Most submissions are made using the web-based BankIt or standalone Sequin programs and accession numbers are assigned by GenBank staff upon receipt. Daily data exchange with the EMBL Data Library in the UK and the DNA Data Bank of Japan helps to ensure worldwide coverage. GenBank is accessible through NCBI's retrieval system, Entrez, which integrates data from the major DNA and protein sequence databases along with taxonomy, genome, mapping, protein structure and domain information, and the biomedical journal literature via PubMed. BLAST provides sequence similarity searches of GenBank and other sequence databases. Complete bimonthly releases and daily updates of the GenBank database are available by FTP. To access GenBank and its related retrieval and analysis services, go to the NCBI Homepage at http://www.ncbi.nlm.nih.gov.

GenBank.

PubMed

Benson, Dennis A; Karsch-Mizrachi, Ilene; Lipman, David J; Ostell, James; Wheeler, David L

2006-01-01

GenBank (R) is a comprehensive database that contains publicly available DNA sequences for more than 205 000 named organisms, obtained primarily through submissions from individual laboratories and batch submissions from large-scale sequencing projects. Most submissions are made using the Web-based BankIt or standalone Sequin programs and accession numbers are assigned by GenBank staff upon receipt. Daily data exchange with the EMBL Data Library in Europe and the DNA Data Bank of Japan ensures worldwide coverage. GenBank is accessible through NCBI's retrieval system, Entrez, which integrates data from the major DNA and protein sequence databases along with taxonomy, genome, mapping, protein structure and domain information, and the biomedical journal literature via PubMed. BLAST provides sequence similarity searches of GenBank and other sequence databases. Complete bimonthly releases and daily updates of the GenBank database are available by FTP. To access GenBank and its related retrieval and analysis services, go to the NCBI Homepage at www.ncbi.nlm.nih.gov.

Update on Genomic Databases and Resources at the National Center for Biotechnology Information.

PubMed

Tatusova, Tatiana

2016-01-01

The National Center for Biotechnology Information (NCBI), as a primary public repository of genomic sequence data, collects and maintains enormous amounts of heterogeneous data. Data for genomes, genes, gene expressions, gene variation, gene families, proteins, and protein domains are integrated with the analytical, search, and retrieval resources through the NCBI website, text-based search and retrieval system, provides a fast and easy way to navigate across diverse biological databases.Comparative genome analysis tools lead to further understanding of evolution processes quickening the pace of discovery. Recent technological innovations have ignited an explosion in genome sequencing that has fundamentally changed our understanding of the biology of living organisms. This huge increase in DNA sequence data presents new challenges for the information management system and the visualization tools. New strategies have been designed to bring an order to this genome sequence shockwave and improve the usability of associated data.

A pilot of a video game (DDR) to promote physical activity and decrease sedentary screen time.

PubMed

Maloney, Ann E; Bethea, T Carter; Kelsey, Kristine S; Marks, Julie T; Paez, Sadye; Rosenberg, Angela M; Catellier, Diane J; Hamer, Robert M; Sikich, Linmarie

2008-09-01

We examined the feasibility of Dance Dance Revolution (DDR), a dance video game, in participants' homes, to increase physical activity (PA) and to decrease sedentary screen time (SST). Sixty children (7.5 +/- 0.5 years) were randomized in a 2:1 ratio to DDR or to wait-list control (10-week delay). DDR use was logged, PA was measured objectively by accelerometry. SST was self-reported at weeks 0 and 10. At week 28, after both groups had access to DDR, accelerometry and SST were repeated. Mean use of DDR was 89 +/- 82 (range 0-660 min) min per week (mpw). The DDR group showed increased vigorous PA and a reduction in light PA; the control group showed no increase in moderate and/or vigorous PA (MVPA) although they also had a reduction in light PA. Differences between the groups were not observed. The DDR group also reported a decrease in SST of -1.2 +/- 3.7 h per week (hpw) (P < 0.05), whereas the controls reported an increase of +3.0 +/- 7.7 hpw (nonsignificant). The difference in SST between the groups was significant, with less SST in the DDR group. Between weeks 10 and 28, numeric reductions in SST were reported in both groups. In the DDR group, SST at week 28 (8.8 +/- 6.0 hpw) was lower than baseline (10.5 +/- 5.5 hpw; P < 0.03). This pilot study suggests that DDR reduces SST and may facilitate slight increases in vigorous PA. Further study is needed to better characterize children and contexts in which DDR may promote a healthy lifestyle.

Shaping climate change in the North Atlantic sector: The role of the atmospheric response to local SST changes vs. large-scale changes

NASA Astrophysics Data System (ADS)

Hand, Ralf; Keenlyside, Noel; Omrani, Nour-Eddine; Greatbatch, Richard; Bader, Jürgen

2017-04-01

Climate change simulations robustly show a warming hole in the sub-polar North Atlantic that results from slowing of the AMOC countering the global warming signal. Here we investigate how the distinct SST spatial structures, which include a sharpening of the Gulf Stream SST gradients, influence climate change in the NA sector in winter. For this we analyse the RCP8.5 scenario simulation of the MPI Earth System Model. Additional sensitivity experiments with the atmospheric model component, ECHAM5, are performed to deconstruct the effect of the local spatial structure of the SST change from those arising from large-scale warming of the ocean, remote SST pattern changes and changed radiative forcings. The MPI model simulation shows a signifcant decrease in precipitation to the south of the GS extension region in the future, despite a strong increase in underlying SST. While directly to the north there is a significant increase in precipitation. These distinct features in the precipitation response over the North Atlantic result from the local SST. Over the Gulf Stream, the differential structure of the precipitation changes reflects the changes of the local SST gradients there. Over the subpolar gyre the increase in precipitation is partly suppressed. In this region the Subpolar Gyre the weakened AMOC causes a SST warming, that is much weaker than the warming other regions of the ocean show at the same latitude. The large-scale response, which includes the overall increase in precipitation over the NA is due to the overall warming, remote SSTs and/or directly connected to the radiative forcing.

El Niño–Southern Oscillation diversity and Southern Africa teleconnections during Austral Summer

USGS Publications Warehouse

Hoell, Andrew; Funk, Christopher C.; Magadzire, Tamuka; Zinke, Jens; Husak, Gregory J.

2014-01-01

A wide range of sea surface temperature (SST) expressions have been observed during the El Niño–Southern Oscillation events of 1950–2010, which have occurred simultaneously with different global atmospheric circulations. This study examines the atmospheric circulation and precipitation during December–March 1950–2010 over the African Continent south of 15∘S, a region hereafter known as Southern Africa, associated with eight tropical Pacific SST expressions characteristic of El Niño and La Niña events. The self-organizing map method along with a statistical distinguishability test was used to isolate the SST expressions of El Niño and La Niña. The seasonal precipitation forcing over Southern Africa associated with the eight SST expressions was investigated in terms of the horizontal winds, moisture budget and vertical motion. El Niño events, with warm SST across the east and central Pacific Ocean and warmer than average SST over the Indian Ocean, are associated with precipitation reductions over Southern Africa. The regional precipitation reductions are forced primarily by large-scale mid-tropospheric subsidence associated with anticyclonic circulation in the upper troposphere. El Niño events with cooler than average SST over the Indian Ocean are associated with precipitation increases over Southern Africa associated with lower tropospheric cyclonic circulation and mid-tropospheric ascent. La Niña events, with cool SST anomalies over the central Pacific and warm SST over the west Pacific and Indian Ocean, are associated with precipitation increases over Southern Africa. The regional precipitation increases are forced primarily by lower tropospheric cyclonic circulation, resulting in mid-tropospheric ascent and an increased flux of moisture into the region.

Assessing the Utility of Seasonal SST Forecasts to the Fisheries Management Process: a Pacific Sardine Case Study

NASA Astrophysics Data System (ADS)

Tommasi, D.; Stock, C. A.

2016-02-01

It is well established that environmental fluctuations affect the productivity of numerous fish stocks. Recent advances in prediction capability of dynamical global forecast systems, such as the state of the art NOAA Geophysical Fluid dynamics Laboratory (GFDL) 2.5-FLOR model, allow for climate predictions of fisheries-relevant variables at temporal scales relevant to the fishery management decision making process. We demonstrate that the GFDL FLOR model produces skillful seasonal SST anomaly predictions over the continental shelf , where most of the global fish yield is generated. The availability of skillful SST projections at this "fishery relevant" scale raises the potential for better constrained estimates of future fish biomass and improved harvest decisions. We assessed the utility of seasonal SST coastal shelf predictions for fisheries management using the case study of Pacific sardine. This fishery was selected because it is one of the few to already incorporate SST into its harvest guideline, and show a robust recruitment-SST relationship. We quantified the effectiveness of management under the status quo harvest guideline (HG) and under alternative HGs including future information at different levels of uncertainty. Usefulness of forecast SST to management was dependent on forecast uncertainty. If the standard deviation of the SST anomaly forecast residuals was less than 0.65, the alternative HG produced higher long-term yield and stock biomass, and reduced the probability of either catch or stock biomass falling below management-set threshold values as compared to the status quo. By contrast, probability of biomass falling to extremely low values increased as compared to the status quo for all alternative HGs except for a perfectly known future SST case. To safeguard against occurrence of such low probability but costly events, a harvest cutoff biomass also has to be implemented into the HG.

Effect of extreme sea surface temperature events on the demography of an age-structured albatross population.

PubMed

Pardo, Deborah; Jenouvrier, Stéphanie; Weimerskirch, Henri; Barbraud, Christophe

2017-06-19

Climate changes include concurrent changes in environmental mean, variance and extremes, and it is challenging to understand their respective impact on wild populations, especially when contrasted age-dependent responses to climate occur. We assessed how changes in mean and standard deviation of sea surface temperature (SST), frequency and magnitude of warm SST extreme climatic events (ECE) influenced the stochastic population growth rate log( λ s ) and age structure of a black-browed albatross population. For changes in SST around historical levels observed since 1982, changes in standard deviation had a larger (threefold) and negative impact on log( λ s ) compared to changes in mean. By contrast, the mean had a positive impact on log( λ s ). The historical SST mean was lower than the optimal SST value for which log( λ s ) was maximized. Thus, a larger environmental mean increased the occurrence of SST close to this optimum that buffered the negative effect of ECE. This 'climate safety margin' (i.e. difference between optimal and historical climatic conditions) and the specific shape of the population growth rate response to climate for a species determine how ECE affect the population. For a wider range in SST, both the mean and standard deviation had negative impact on log( λ s ), with changes in the mean having a greater effect than the standard deviation. Furthermore, around SST historical levels increases in either mean or standard deviation of the SST distribution led to a younger population, with potentially important conservation implications for black-browed albatrosses.This article is part of the themed issue 'Behavioural, ecological and evolutionary responses to extreme climatic events'. © 2017 The Author(s).

Interdecadal variability in pan-Pacific and global SST, revisited

NASA Astrophysics Data System (ADS)

Tung, Ka-Kit; Chen, Xianyao; Zhou, Jiansong; Li, King-Fai

2018-05-01

Interest in the "Interdecadal Pacific Oscillation (IPO)" in the global SST has surged recently on suggestions that the Pacific may be the source of prominent interdecadal variations observed in the global-mean surface temperature possibly through the mechanism of low-frequency modulation of the interannual El Nino-Southern Oscillation (ENSO) phenomenon. IPO was defined by performing empirical orthogonal function (EOF) analysis of low-pass filtered SST. The low-pass filtering creates its unique set of mathematical problems—in particular, mode mixing—and has led to some questions, many unanswered. To understand what these EOFs are, we express them first in terms of the recently developed pairwise rotated EOFs of the unfiltered SST, which can largely separate the high and low frequency bands without resorting to filtering. As reported elsewhere, the leading rotated dynamical modes (after the global warming trend) of the unfiltered global SST are: ENSO, Pacific Decadal Oscillation (PDO), and Atlantic Multidecadal Oscillation (AMO). IPO is not among them. The leading principal component (PC) of the low-pass filtered global SST is usually defined as IPO and it is seen to comprise of ENSO, PDO and AMO in various proportions depending on the filter threshold. With decadal filtering, the contribution of the interannual ENSO is understandably negligible. The leading dynamical mode of the filtered global SST is mostly AMO, and therefore should not have been called the Interdecadal "Pacific" Oscillation. The leading dynamical mode of the filtered pan-Pacific SST is mostly PDO. This and other low-frequency variability that have the action center in the Pacific, from either the pan-Pacific or global SST, have near zero global mean.

Comparison of intracorporeal single-stapled and double-stapled anastomosis in laparoscopic low anterior resection for rectal cancer: a case-control study.

PubMed

Kim, Hye Jin; Choi, Gyu-Seog; Park, Jun Seok; Park, Soo Yeun

2013-01-01

Recently, a single-stapled technique (SST) was performed instead of the conventional double-stapled technique (DST) in laparoscopic low anterior resection for anastomosis, by placement of intracorporeal purse-string sutures on the distal rectum with transanal specimen extraction. This study aimed to compare the short-term outcomes between the two anastomotic techniques. Between July 2007 and April 2010, 60 patients underwent SST by laparoscopic or robotic procedure. These patients were matched 1:2 by age, gender, date of surgery, and tumor stage with 120 patients who underwent conventional DST in laparoscopic low anterior resection. The robotic-assisted operative approach was used more frequently in the SST group than in the DST group (61.7 % vs. 3.3 %, p < 0.001). The mean operative time was 203.9 (range, 120-400) min for the SST group and 167.6 (range, 90-300) min for the DST group (p < 0.001). For specimen removal, the transanal approach was used in the SST group, while the transabdominal approach was used for the DST group. The pain score (visual analogue scale) of the SST group was lower (4.5 vs. 5.6, p < 0.001), although postoperative recovery was similar. Pathological examination revealed that the distal resection margin was significantly longer in the SST group (3.1 vs. 2.5 cm, p = 0.018). Postoperative morbidity including anastomotic leakage was similar in both groups. SST yielded equivalent short-term outcomes when compared to conventional DST and provided the advantages of minimal access and a longer distal resection margin. Therefore, SST in lower anterior resection may be a useful alternative to conventional DST.

Sr/Ca proxy sea-surface temperature reconstructions from modern and holocene Montastraea faveolata specimens from the Dry Tortugas National Park

USGS Publications Warehouse

Flannery, Jennifer A.; Poore, Richard Z.

2013-01-01

Sr/Ca ratios from skeletal samples from two Montastraea faveolata corals (one modern, one Holocene, ~6 Ka) from the Dry Tortugas National Park were measured as a proxy for sea-surface temperature (SST). We sampled coral specimens with a computer-driven triaxial micromilling machine, which yielded an average of 15 homogenous samples per annual growth increment. We regressed Sr/Ca values from resulting powdered samples against a local SST record to obtain a calibration equation of Sr/Ca = -0.0392 SST + 10.205, R = -0.97. The resulting calibration was used to generate a 47-year modern (1961-2008) and a 7-year Holocene (~6 Ka) Sr/Ca subannually resolved proxy record of SST. The modern M. faveolata yields well-defined annual Sr/Ca cycles ranging in amplitude from ~0.3 and 0.5 mmol/mol. The amplitude of ~0.3 to 0.5 mmol/mol equates to a 10-15°C seasonal SST amplitude, which is consistent with available local instrumental records. Summer maxima proxy SSTs calculated from the modern coral Sr/ Ca tend to be fairly stable: most SST maxima from 1961–2008 are 29°C ± 1°C. In contrast, winter minimum SST calculated in the 47-year modern time-series are highly variable, with a cool interval in the early to mid-1970s. The Holocene (~6 Ka) Montastraea faveolata coral also yields distinct annual Sr/Ca cycles with amplitudes ranging from ~0.3 to 0.6 mmol/mol. Absolute Sr/Ca values and thus resulting SST estimates over the ~7-year long record are similar to those from the modern coral. We conclude that Sr/Ca from Montastraea faveolata has high potential for developing subannually resolved Holocene SST records.

Octreotide promotes apoptosis in human somatotroph tumor cells by activating somatostatin receptor type 2.

PubMed

Ferrante, E; Pellegrini, C; Bondioni, S; Peverelli, E; Locatelli, M; Gelmini, P; Luciani, P; Peri, A; Mantovani, G; Bosari, S; Beck-Peccoz, P; Spada, A; Lania, A

2006-09-01

Somatostatin analogs currently used in the treatment of acromegaly and other neuroendocrine tumors inhibit hormone secretion and cell proliferation by binding to somatostatin receptor type (SST) 2 and 5. The antiproliferative pathways coupled to these receptors have been only partially characterized. The aim of this study was to evaluate the effect of octreotide and super selective SST2 (BIM23120) and SST5 (BIM23206) analogs on apoptotic activity and apoptotic gene expression in human somatotroph tumor cells. Eight somatotroph tumors expressing similar levels of SST2 and SST5 evaluated by real-time PCR and western blot analyses were included in the study. In cultured cells obtained from these tumors, octreotide induced a dose-dependent increase of caspase-3 activity (160+/-20% vs basal at 10 nM) and cleaved cytokeratin 18 levels (172+/-25% vs basal) at concentrations higher than 0.1 nM. This effect was due to SST2 activation since BIM23120 elicited comparable responses, while BIM23206 was ineffective. BIM23120-stimulated apoptosis was dependent on phosphatases, since it was abrogated by the inhibitor orthovanadate, and independent from the induction of apoptosis-related genes, such as p53, p63, p73, Bcl-2, Bax, BID, BIK, TNFSF8, and FADD. In somatotroph tumors, both BIM23120 and BIM2306 caused growth arrest as indicated by the increase in p27 and decrease in cyclin D1 expression. In conclusion, the present study showed that octreotide-induced apoptosis in human somatotroph tumor cells by activating SST2. This effect, together with the cytostatic action exerted by both SST2 and SST5 analogs, might account for the tumor shrinkage observed in acromegalic patients treated with long-acting somatostatin analogs.

Enhanced influence of early-spring tropical Indian Ocean SST on the following early-summer precipitation over Northeast China

NASA Astrophysics Data System (ADS)

Han, Tingting; He, Shengping; Wang, Huijun; Hao, Xin

2017-04-01

The relationship between the tropical Indian Ocean (TIO) and East Asian summer monsoon/precipitation has been documented in many studies. However, the precursor signals of summer precipitation in the TIO sea surface temperature (SST), which is important for climate prediction, have drawn little attention. This study identified a strong relationship between early-spring TIO SST and subsequent early-summer precipitation in Northeast China (NEC) since the late 1980s. For 1961-1986, the correlations between early-spring TIO SST and early-summer NEC precipitation were statistically insignificant; for 1989-2014, they were positively significant. Since the late 1980s, the early-spring positive TIO SST anomaly was generally followed by a significant anomalous anticyclone over Japan; that facilitated anomalous southerly winds over NEC, conveying more moisture from the North Pacific. Further analysis indicated that an early TIO SST anomaly showed robust persistence into early summer. However, the early-summer TIO SST anomaly displayed a more significant influence on simultaneous atmospheric circulation and further affected NEC precipitation since the late 1980s. In 1989-2014, the early-summer Hadley and Ferrell cell anomalies associated with simultaneous TIO SST anomaly were much more significant and extended further north to mid-latitudes, which provided a dynamic foundation for the TIO-mid-latitude connection. Correspondingly, the TIO SST anomaly could lead to significant divergence anomalies over the Mediterranean. The advections of vorticity by the divergent component of the flow effectively acted as a Rossby wave source. Thus, an apparent Rossby wave originated from the Mediterranean and propagated east to East Asia; that further influenced the NEC precipitation through modulation to the atmospheric circulation (e.g., surface wind, moisture, vertical motion).

SST cooling along coastal Java and Sumatra during positive Indian Ocean Dipole events

NASA Astrophysics Data System (ADS)

Delman, A. S.; McClean, J.; Sprintall, J.; Talley, L. D.; Bryan, F.; Johnson, B. K.; Carton, J.

2016-02-01

The evolution of positive Indian Ocean Dipole (pIOD) events is driven in part by anomalous SST cooling near the coasts of Java and Sumatra. However, the mechanisms and timeline of surface temperature changes near these two islands are distinct. Satellite data and mixed layer budgets in a forced ocean model simulation with 0.1° spatial resolution were used to characterize the dominant influences on SST in each region during pIOD events. Along the south coast of Java, where upwelling from southeasterly trade winds happens seasonally in June-September, strengthening/weakening of the trade winds has little effect on the interannual variability of SST. Instead, remotely-forced upwelling Kelvin waves are the primary mechanism for producing anomalous Java SST cooling in the early stages of a pIOD event. Other mechanisms that affect Java SST anomalies include inflows from the interior Indonesian Seas, mesoscale eddies, and air-sea heat fluxes; these influences can hasten the decay of cool Java SST anomalies and therefore may impact the strength and duration of pIOD events. Along the west coast of Sumatra, surface cooling is initially delayed by a deeper thermocline and a salinity-stratified barrier layer. Hence upwelling Kelvin waves do not substantially affect SST near Sumatra during the first 2-3 months of Java SST cooling; however, they do help drive surface cooling near Sumatra once the barrier layer has been sufficiently eroded by waters of decreasing temperature and increasing salinity. Upwelling Kelvin wave activity in the equatorial Indian Ocean starting in April is also shown to be a robust predictor of pIOD events later in the calendar year.

Preparation and biological evaluation of 64Cu-CB-TE2A-sst2-ANT, a somatostatin antagonist for PET imaging of somatostatin receptor-positive tumors.

PubMed

Wadas, Thaddeus J; Eiblmaier, Martin; Zheleznyak, Alexander; Sherman, Christopher D; Ferdani, Riccardo; Liang, Kexian; Achilefu, Samuel; Anderson, Carolyn J

2008-11-01

Recently, the somatostatin receptor subtype 2 (SSTR2) selective antagonist sst2-ANT was determined to have a high affinity for SSTR2. Additionally, 111In-1,4,7,10-tetraazacyclododecane-1,4,7,10-tetraacetic acid-sst2-ANT showed high uptake in an SSTR2-transfected, tumor-bearing mouse model and suggested that radiolabeled SSTR2 antagonists may be superior to agonists for imaging SSTR2-positive tumors. This report describes the synthesis and evaluation of 64Cu-CB-4,11-bis(carboxymethyl)-1,4,8,11-tetraazabicyclo[6.6.2]hexadecane-sst2-ANT (64Cu-CB-TE2A-sst2-ANT) as a PET radiopharmaceutical for the in vivo imaging of SSTR2-positive tumors. Receptor-binding studies were performed to determine the dissociation constant of the radiopharmaceutical 64Cu-CB-TE2A-sst2-ANT using AR42J rat pancreatic tumor cell membranes. The internalization of 64Cu-CB-TE2A-sst2-ANT was compared with that of the 64Cu-labeled agonist 64Cu-CB-TE2A-tyrosine3-octreotate (64Cu-CB-TE2A-Y3-TATE) in AR42J cells. Both radiopharmaceuticals were also compared in vivo through biodistribution studies using healthy rats bearing AR42J tumors, and small-animal PET/CT of 64Cu-CB-TE2A-sst2-ANT was performed. The dissociation constant value for the radiopharmaceutical was determined to be 26 +/- 2.4 nM, and the maximum number of binding sites was 23,000 fmol/mg. 64Cu-CB-TE2A-sst2-ANT showed significantly less internalization than did 64Cu-CB-TE2A-Y3-TATE at time points from 15 min to 4 h. Biodistribution studies revealed that the clearance of 64Cu-CB-TE2A-sst2-ANT from the blood was rapid, whereas the clearance of 64Cu-CB-TE2A-sst2-ANT from the liver and kidneys was more modest at all time points. Tumor-to-blood and tumor-to-muscle ratios were determined to be better for 64Cu-CB-TE2A-sst2-ANT than those for 64Cu-CB-TE2A-Y3-TATE at the later time points, although liver and kidney uptake was significantly higher. Small-animal imaging using 64Cu-CB-TE2A-sst2-ANT revealed excellent tumor-to-background contrast at 4 h after injection, and standardized uptake values remained high even after 24 h. The PET radiopharmaceutical 64Cu-CB-TE2A-sst2-ANT is an attractive agent, worthy of future study as a PET radiopharmaceutical for the imaging of somatostatin receptor-positive tumors.

The Mg - SST relationship in mollusc shells: is there a rule? Examples from three tropical species

NASA Astrophysics Data System (ADS)

Lazareth, C. E.; Guzmán, N.; Lecornec, F.; Cabioch, G.; Ortlieb, L.

2009-04-01

The geochemistry of mollusc shells is currently viewed as a powerful tool for paleoenvironmental reconstructions. Indeed, molluscs are ubiquitous animals, with a worldly geographical and environmental distribution, providing various environmental records. Moreover, mollusc shells are abundantly found in fossil and archaeological settings. In the paleoclimatic reconstructions, the sea-surface temperatures (SST) are a key parameter. If shell stable oxygen isotope signatures can provide accurate SST records, this proxy is also influenced by the water isotopic composition. To find another tracer which would depend on the SST solely, the relationship between Mg content changes in mollusc shell and SST has been investigated for a few years. Nevertheless, if the reliability of shell Mg as SST tracer has been proven in some species, this is clearly not a "universal" and definitive rule. To reconstruct the past tropical SSTs, Mg calibration studies were undertaken on Concholepas concholepas (gastropod, South America), Protothaca thaca (bivalve, South America) and Tridacna squamosa (bivalve, New Caledonia). The very high-resolution (infra-daily) analyses of the C. concholepas gastropod revealed a significant metabolism control, at the nyctemeral scale, on the Mg incorporation into the calcite shell layer. Over a two months period, the Mg fluctuations in C. concholepas shell do not match with the SST instrumental measurements. Mg content changes along the aragonitic shell growth axis of several living P. thaca from a same Peruvian site are significantly different indicating no relationship between Mg and SST. The Mg variations measured in a Chilean P. thaca shell are, surprisingly, similar to variations of the instrumental SST. Unless this quite reliable relationship between P. thaca shell and SST is confirmed, and that the inter-site difference in Mg response to environmental forcing is understood, P. thaca shell Mg cannot be used as SST proxy. Lastly, a preliminary work carried out on the external aragonitic shell layer of T. squamosa showed that, over 14 months of growth, Mg and SST are well conversely correlated but the seasonal cycle is interrupted by a Mg peak that corresponds to a shell growth anomaly. Additional studies, especially dedicated on anomalies-related Mg increases, must be performed to validate the T. squamosa shell as a reliable SST proxy. Considering previous works and the results presented here, one can definitively conclude that, at least, calibration procedures are indispensable before using Mg as a SST proxy in mollusc shells. In addition, further work specifically directed towards the role of the metabolism on the incorporation of Mg in mollusc shells could be the key to understand, and thus to use, this proxy for which, at the present time, no single rule is applicable to molluscs. Contribution of the CONCHAS (PNEDC), CENSOR (6th PCRD) and BioCalc (ESF) projects. "This study was financed and conducted in the frame of the EU-project CENSOR (Climate variability and El Nino Southern Oscillation: Impacts for natural resources and management, contract 511071) and is CENSOR publication 0375".

ENSO modulation of tropical Indian Ocean subseasonal variability

NASA Astrophysics Data System (ADS)

Jung, Eunsil; Kirtman, Ben P.

2016-12-01

In this study, we use 30 years of retrospective climate model forecasts and observational estimates to show that El Niño/Southern Oscillation (ENSO) affects the amplitude of subseasonal variability of sea surface temperature (SST) in the southwest Indian Ocean, an important Tropical Intraseasonal Oscillation (TISO) onset region. The analysis shows that deeper background mixed-layer depths and warmer upper ocean conditions during El Niño reduce the amplitude of the subseasonal SST variability over Seychelles-Chagos Thermocline Ridge (SCTR), which may reduce SST-wind coupling and the amplitude of TISO variability. The opposite holds for La Niña where the shallower mixed-layer depth enhances SST variability over SCTR, which may increase SST-wind coupling and the amplitude of TISO variability.

Reevaluation of mid-Pliocene North Atlantic sea surface temperatures

USGS Publications Warehouse

Robinson, Marci M.; Dowsett, Harry J.; Dwyer, Gary S.; Lawrence, Kira T.

2008-01-01

Multiproxy temperature estimation requires careful attention to biological, chemical, physical, temporal, and calibration differences of each proxy and paleothermometry method. We evaluated mid-Pliocene sea surface temperature (SST) estimates from multiple proxies at Deep Sea Drilling Project Holes 552A, 609B, 607, and 606, transecting the North Atlantic Drift. SST estimates derived from faunal assemblages, foraminifer Mg/Ca, and alkenone unsaturation indices showed strong agreement at Holes 552A, 607, and 606 once differences in calibration, depth, and seasonality were addressed. Abundant extinct species and/or an unrecognized productivity signal in the faunal assemblage at Hole 609B resulted in exaggerated faunal-based SST estimates but did not affect alkenone-derived or Mg/Ca–derived estimates. Multiproxy mid-Pliocene North Atlantic SST estimates corroborate previous studies documenting high-latitude mid-Pliocene warmth and refine previous faunal-based estimates affected by environmental factors other than temperature. Multiproxy investigations will aid SST estimation in high-latitude areas sensitive to climate change and currently underrepresented in SST reconstructions.

Western tropical Pacific multidecadal variability forced by the Atlantic multidecadal oscillation

PubMed Central

Sun, Cheng; Kucharski, Fred; Li, Jianping; Jin, Fei-Fei; Kang, In-Sik; Ding, Ruiqiang

2017-01-01

Observational analysis suggests that the western tropical Pacific (WTP) sea surface temperature (SST) shows predominant variability over multidecadal time scales, which is unlikely to be explained by the Interdecadal Pacific Oscillation. Here we show that this variability is largely explained by the remote Atlantic multidecadal oscillation (AMO). A suite of Atlantic Pacemaker experiments successfully reproduces the WTP multidecadal variability and the AMO–WTP SST connection. The AMO warm SST anomaly generates an atmospheric teleconnection to the North Pacific, which weakens the Aleutian low and subtropical North Pacific westerlies. The wind changes induce a subtropical North Pacific SST warming through wind–evaporation–SST effect, and in response to this warming, the surface winds converge towards the subtropical North Pacific from the tropics, leading to anomalous cyclonic circulation and low pressure over the WTP region. The warm SST anomaly further develops due to the SST–sea level pressure–cloud–longwave radiation positive feedback. Our findings suggest that the Atlantic Ocean acts as a key pacemaker for the western Pacific decadal climate variability. PMID:28685765

Decadal changes in South Pacific sea surface temperatures and the relationship to the Pacific decadal oscillation and upper ocean heat content

NASA Astrophysics Data System (ADS)

Linsley, Braddock K.; Wu, Henry C.; Dassié, Emilie P.; Schrag, Daniel P.

2015-04-01

Decadal changes in Pacific sea surface temperatures (SSTs) and upper ocean heat content (OHC) remain poorly understood. We present an annual average composite coral Sr/Ca-derived SST time series extending back to 1791 from Fiji, Tonga, and Rarotonga (FTR) in the Pacific Decadal Oscillation (PDO) sensitive region of the southwest Pacific. Decadal SST maxima between 1805 and 1830 Common Era (C.E.) indicate unexplained elevated SSTs near the end of the Little Ice Age. The mean period of decadal SST variability in this region has a period near 25 years. Decades of warmer (cooler) FTR SST co-occur with PDO negative (positive) phases since at least ~1930 C.E. and positively correlate with South Pacific OHC (0-700 m). FTR SST is also inversely correlated with decadal changes in equatorial Pacific SST as measured by coral Sr/Ca. Collectively, these results support the fluctuating trade wind-shallow meridional overturning cell mechanism for decadal modulation of Pacific SSTs and OHC.

Relationships of Upper Tropospheric Water Vapor, Clouds and SST: MLS Observations, ECMWF Analyses and GCM Simulations

NASA Technical Reports Server (NTRS)

Su, Hui; Waliser, Duane E.; Jiang, Jonathan H.; Li, Jui-lin; Read, William G.; Waters, Joe W.; Tompkins, Adrian M.

2006-01-01

The relationships of upper tropospheric water vapor (UTWV), cloud ice and sea surface temperature (SST) are examined in the annual cycles of ECMWF analyses and simulations from 15 atmosphere-ocean coupled models which were contributed to the IPCC AR4. The results are compared with the observed relationships based on UTWV and cloud ice measurements from MLS on Aura. It is shown that the ECMWF analyses produce positive correlations between UTWV, cloud ice and SST, similar to the MLS data. The rate of the increase of cloud ice and UTWV with SST is about 30% larger than that for MLS. For the IPCC simulations, the relationships between UTWV, cloud ice and SST are qualitatively captured. However, the magnitudes of the simulated cloud ice show a considerable disagreement between models, by nearly a factor of 10. The amplitudes of the approximate linear relations between UTWV, cloud ice and SST vary by a factor up to 4.

Combined effects of recent Pacific cooling and Indian Ocean warming on the Asian monsoon.

PubMed

Ueda, Hiroaki; Kamae, Youichi; Hayasaki, Masamitsu; Kitoh, Akio; Watanabe, Shigeru; Miki, Yurisa; Kumai, Atsuki

2015-11-13

Recent research indicates that the cooling trend in the tropical Pacific Ocean over the past 15 years underlies the contemporaneous hiatus in global mean temperature increase. During the hiatus, the tropical Pacific Ocean displays a La Niña-like cooling pattern while sea surface temperature (SST) in the Indian Ocean has continued to increase. This SST pattern differs from the well-known La Niña-induced basin-wide cooling across the Indian Ocean on the interannual timescale. Here, based on model experiments, we show that the SST pattern during the hiatus explains pronounced regional anomalies of rainfall in the Asian monsoon region and thermodynamic effects due to specific humidity change are secondary. Specifically, Indo-Pacific SST anomalies cause convection to intensify over the tropical western Pacific, which in turn suppresses rainfall in mid-latitude East Asia through atmospheric teleconnection. Overall, the tropical Pacific SST effect opposes and is greater than the Indian Ocean SST effect.

Genome sequencing of the extinct Eurasian wild aurochs illuminates the phylogeography and evolution of cattle

USDA-ARS?s Scientific Manuscript database

Interrogation of modern and ancient bovine genome sequences provides a valuable model to study the evolution of cattle. Here, we analyse the first complete wild aurochs (Bos primigenius) genome sequence using DNA extracted from a ~ 6,750 year-old humerus bone retrieved from a cave site in Derbyshire...

Event-Related Potential Correlates of Declarative and Non-Declarative Sequence Knowledge

ERIC Educational Resources Information Center

Ferdinand, Nicola K.; Runger, Dennis; Frensch, Peter A.; Mecklinger, Axel

2010-01-01

The goal of the present study was to demonstrate that declarative and non-declarative knowledge acquired in an incidental sequence learning task contributes differentially to memory retrieval and leads to dissociable ERP signatures in a recognition memory task. For this purpose, participants performed a sequence learning task and were classified…

GenBank.

PubMed

Benson, Dennis A; Karsch-Mizrachi, Ilene; Lipman, David J; Ostell, James; Sayers, Eric W

2010-01-01

GenBank is a comprehensive database that contains publicly available nucleotide sequences for more than 300,000 organisms named at the genus level or lower, obtained primarily through submissions from individual laboratories and batch submissions from large-scale sequencing projects, including whole genome shotgun (WGS) and environmental sampling projects. Most submissions are made using the web-based BankIt or standalone Sequin programs, and accession numbers are assigned by GenBank staff upon receipt. Daily data exchange with the European Molecular Biology Laboratory Nucleotide Sequence Database in Europe and the DNA Data Bank of Japan ensures worldwide coverage. GenBank is accessible through the NCBI Entrez retrieval system, which integrates data from the major DNA and protein sequence databases along with taxonomy, genome, mapping, protein structure and domain information, and the biomedical journal literature via PubMed. BLAST provides sequence similarity searches of GenBank and other sequence databases. Complete bi-monthly releases and daily updates of the GenBank database are available by FTP. To access GenBank and its related retrieval and analysis services, begin at the NCBI homepage: www.ncbi.nlm.nih.gov.

GenBank.

PubMed

Benson, Dennis A; Karsch-Mizrachi, Ilene; Lipman, David J; Ostell, James; Sayers, Eric W

2009-01-01

GenBank is a comprehensive database that contains publicly available nucleotide sequences for more than 300,000 organisms named at the genus level or lower, obtained primarily through submissions from individual laboratories and batch submissions from large-scale sequencing projects. Most submissions are made using the web-based BankIt or standalone Sequin programs, and accession numbers are assigned by GenBank(R) staff upon receipt. Daily data exchange with the European Molecular Biology Laboratory Nucleotide Sequence Database in Europe and the DNA Data Bank of Japan ensures worldwide coverage. GenBank is accessible through the National Center for Biotechnology Information (NCBI) Entrez retrieval system, which integrates data from the major DNA and protein sequence databases along with taxonomy, genome, mapping, protein structure and domain information, and the biomedical journal literature via PubMed. BLAST provides sequence similarity searches of GenBank and other sequence databases. Complete bimonthly releases and daily updates of the GenBank database are available by FTP. To access GenBank and its related retrieval and analysis services, begin at the NCBI Homepage: www.ncbi.nlm.nih.gov.

Midlatitude atmosphere-ocean interaction during El Nino. Part I. The north Pacific ocean

DOE Office of Scientific and Technical Information (OSTI.GOV)

Alexander, M.A.

Atmosphere-ocean modeling experiments are used to investigate the formation of sea surface temperature (SST) anomalies in the North Pacific Ocean during fall and winter of the El Nino year. Experiments in which the NCAR Community Climate Model (CCM) surface fields are used to force a mixed-layer ocean model in the North Pacific (no air-sea feedback) are compared to simulations in which the CCM and North Pacific Ocean model are coupled. Anomalies in the atmosphere and the North Pacific Ocean during El Nino are obtained from the difference between simulations with and without prescribed warm SST anomalies in the tropical Pacific.more » In both the forced and coupled experiments, the anomaly pattern resembles a composite of the actual SST anomaly field during El Nino: warm SSTs develop along the coast of North America and cold SSTs form in the central Pacific. In the coupled simulations, air-sea interaction results in a 25% to 50% reduction in the magnitude of the SST and mixed-layer depth anomalies, resulting in more realistic SST fields. Coupling also decreases the SST anomaly variance; as a result, the anomaly centers remain statistically significant even though the magnitude of the anomalies is reduced. Three additional sensitivity studies indicate that air-sea feedback and entrainment act to damp SST anomalies while Ekman pumping has a negligible effect on mixed-layer depth and SST anomalies in midatitudes.« less

Forecasting decadal changes in sea surface temperatures and coral bleaching within a Caribbean coral reef

NASA Astrophysics Data System (ADS)

Li, Angang; Reidenbach, Matthew A.

2014-09-01

Elevated sea surface temperature (SST) caused by global warming is one of the major threats to coral reefs. While increased SST has been shown to negatively affect the health of coral reefs by increasing rates of coral bleaching, how changes to atmospheric heating impact SST distributions, modified by local flow environments, has been less understood. This study aimed to simulate future water flow patterns and water surface heating in response to increased air temperature within a coral reef system in Bocas del Toro, Panama, located within the Caribbean Sea. Water flow and SST were modeled using the Delft3D-FLOWcomputer simulation package. Locally measured physical parameters, including bathymetry, astronomic tidal forcing, and coral habitat distribution were input into the model and water flow, and SST was simulated over a four-month period under present day, as well as projected warming scenarios in 2020s, 2050s, and 2080s. Changes in SST, and hence the thermal stress to corals, were quantified by degree heating weeks. Results showed that present-day reported bleaching sites were consistent with localized regions of continuous high SST. Regions with highest SST were located within shallow coastal sites adjacent to the mainland or within the interior of the bay, and characterized by low currents with high water retention times. Under projected increases in SSTs, shallow reef areas in low flow regions were found to be hot spots for future bleaching.

Novel, potent, and radio-iodinatable somatostatin receptor 1 (sst1) selective analogues.

PubMed

Erchegyi, Judit; Cescato, Renzo; Grace, Christy Rani R; Waser, Beatrice; Piccand, Véronique; Hoyer, Daniel; Riek, Roland; Rivier, Jean E; Reubi, Jean Claude

2009-05-14

The proposed sst(1) pharmacophore (J. Med. Chem. 2005, 48, 523-533) derived from the NMR structures of a family of mono- and dicyclic undecamers was used to design octa-, hepta-, and hexamers with high affinity and selectivity for the somatostatin sst(1) receptor. These compounds were tested for their in vitro binding properties to all five somatostatin (SRIF) receptors using receptor autoradiography; those with high SRIF receptor subtype 1 (sst(1)) affinity and selectivity were shown to be agonists when tested functionally in a luciferase reporter gene assay. Des-AA(1,4-6,10,12,13)-[DTyr(2),DAgl(NMe,2naphthoyl)(8),IAmp(9)]-SRIF-Thr-NH(2) (25) was radio-iodinated ((125)I-25) and specifically labeled sst(1)-expressing cells and tissues. 3D NMR structures were calculated for des-AA(1,4-6,10,12,13)-[DPhe(2),DTrp(8),IAmp(9)]-SRIF-Thr-NH(2) (16), des-AA(1,2,4-6,10,12,13)-[DAgl(NMe,2naphthoyl)(8),IAmp(9)]-SRIF-Thr-NH(2) (23), and des-AA(1,2,4-6,10,12,13)-[DAgl(NMe,2naphthoyl)(8),IAmp(9),Tyr(11)]-SRIF-NH(2) (27) in DMSO. Though the analogues have the sst(1) pharmacophore residues at the previously determined distances from each other, the positioning of the aromatic residues in 16, 23, and 27 is different from that described earlier, suggesting an induced fit mechanism for sst(1) binding of these novel, less constrained sst(1)-selective family members.

Novel receptor-targeted contrast agents for optical imaging of tumors

NASA Astrophysics Data System (ADS)

Becker, Andreas; Hessenius, Carsten; Bhargava, Sarah; Ebert, Bernd; Sukowski, Uwe; Rinneberg, Herbert H.; Wiedenmann, Bertram; Semmler, Wolfhard; Licha, Kai

2000-04-01

Many gastroenteropancreatic tumors express receptors for somatostatin (SST) and/or vasoactive intestinal peptide (VIP). These receptors can be used as molecular targets for the delivery of contrast agents for tumor diagnostics. We have synthesized conjugates consisting of a cyanine dye and an SST analogue or VIP for use as contrast agents in optical imaging. Receptor binding and internalization of these compounds were examined with optical methods in transfected RIN38 tumor cells expressing the SST2 receptor or a GFP- labeled VIP (VPAC1) receptor. Furthermore, biodistribution of the conjugates was examined by laser-induced fluorescence imaging in nude mice bearing SST2 or VPAC1 receptor- expressing tumors. After incubation of RIN38 SSTR2 cells in the presence of 100 nM indotricarbocyanine-SST analogue, cell-associated fluorescence increased, whereas no increase was observed when receptor-medicated endocytosis was inhibited. Indodicarbocyanine-VIP accumulated in RIN38 VPAC1 cells and co-localization with the GFP-labeled VPAC1 receptor was observed. After injection of indotricarbocyanine-SST analogue into tumor-bearing nude mice, SST2 receptor-positive tumors could be visualized for a time period from 10 min to at least 48 h. After application of indodicarbocyanine-VIP, a fluorescence signal in VIP1 receptor-expressing tumors was only detected during the first hour. We conclude that cyanine dye-labeled VIP and SST analogue are novel, targeted contrast agents for the optical imaging of tumors expressing the relevant receptor.

Superior Rhythm Discrimination With the SmartShock Technology Algorithm　- Results of the Implantable Defibrillator With Enhanced Features and Settings for Reduction of Inaccurate Detection (DEFENSE) Trial.

PubMed

Oginosawa, Yasushi; Kohno, Ritsuko; Honda, Toshihiro; Kikuchi, Kan; Nozoe, Masatsugu; Uchida, Takayuki; Minamiguchi, Hitoshi; Sonoda, Koichiro; Ogawa, Masahiro; Ideguchi, Takeshi; Kizaki, Yoshihisa; Nakamura, Toshihiro; Oba, Kageyuki; Higa, Satoshi; Yoshida, Keiki; Tsunoda, Soichi; Fujino, Yoshihisa; Abe, Haruhiko

2017-08-25

Shocks delivered by implanted anti-tachyarrhythmia devices, even when appropriate, lower the quality of life and survival. The new SmartShock Technology ® (SST) discrimination algorithm was developed to prevent the delivery of inappropriate shock. This prospective, multicenter, observational study compared the rate of inaccurate detection of ventricular tachyarrhythmia using the SST vs. a conventional discrimination algorithm.Methods and Results:Recipients of implantable cardioverter defibrillators (ICD) or cardiac resynchronization therapy defibrillators (CRT-D) equipped with the SST algorithm were enrolled and followed up every 6 months. The tachycardia detection rate was set at ≥150 beats/min with the SST algorithm. The primary endpoint was the time to first inaccurate detection of ventricular tachycardia (VT) with conventional vs. the SST discrimination algorithm, up to 2 years of follow-up. Between March 2012 and September 2013, 185 patients (mean age, 64.0±14.9 years; men, 74%; secondary prevention indication, 49.5%) were enrolled at 14 Japanese medical centers. Inaccurate detection was observed in 32 patients (17.6%) with the conventional, vs. in 19 patients (10.4%) with the SST algorithm. SST significantly lowered the rate of inaccurate detection by dual chamber devices (HR, 0.50; 95% CI: 0.263-0.950; P=0.034). Compared with previous algorithms, the SST discrimination algorithm significantly lowered the rate of inaccurate detection of VT in recipients of dual-chamber ICD or CRT-D.

Soluble ST2 Plasma Concentrations Predict Mortality in HBV-Related Acute-on-Chronic Liver Failure

PubMed Central

Mo, Zhishuo; Zhu, Jianyun; Pang, Xiuqing; Wu, Zhebin; Wang, Ke; Li, Xinhua; Xie, Dongying; Gao, Zhiliang

2015-01-01

Hepatitis B virus-related acute-on-chronic liver failure (HBV-ACLF) is a rapidly progressing and frequently fatal condition. The aim of this study was to determine whether interleukin- (IL-) 33 and soluble ST2 (sST2) were associated with disease severity and mortality in HBV-ACLF. We found that plasma levels of sST2 but not IL-33 were higher in HBV-ACLF patients compared with chronic hepatitis B (CHB) patients and healthy controls. However, plasma levels of IL-33, TNF-α, IFN-γ, and IL-10 did not correlate with sST2 levels. Similarly, immunohistochemistry revealed low IL-33 expression and high ST2 expression in liver sections of patients with HBV-ACLF. Evaluation of dynamic changes of sST2 in HBV-ACLF showed that plasma sST2 levels increased over time in patients who died during the 180-day follow-up but decreased in those who survived. In addition, plasma sST2 level after week 1 correlated with disease severity, as assessed by total bilirubin, prothrombin time, and model for end-stage liver disease score. Results of Kaplan-Meier survival analysis showed that higher sST2 concentration (≥87 ng/mL) at week 3 was associated with poor survival. These findings indicate the potential usefulness of sST2 as a predictor of disease severity and in making treatment decisions for patients with HBV-ACLF. PMID:25892854

Influence of SST anomalies in low latitudes on atmospheric heat transport to the Arctic

NASA Astrophysics Data System (ADS)

Alekseev, Genrikh; Kuzmina, Svetlana; Glok, Natalia

2017-04-01

The purpose of the study is to assess the influence of SST anomalies in the low latitudes of the Atlantic, Indian and Pacific oceans to climatic change of the winter atmospheric meridional heat transport (MAHT) to the Arctic and to propose the mechanisms of this influence. Estimates of sensible and latent heat transport to the Arctic through the "Atlantic Gate" at 70 ° N in winter (December-February) 1980-2015 fulfilled on base ERA / Interim and monthly SST from HadISST were used. Multi-dimensional cross-correlation analysis was applied. The area and month in each ocean were found with maximal correlations between SST and winter MAHT. Mean SST in selected areas for each month of 1980-2015 were calculated and its correlations with MAHT were estimated. The correlation coefficients equal from 0.57 to 0.42, and after removing the noise increased up to 0.75 with MAHT lag from 27 to 30 months. The SST and MAHT series include together with positive trend the 5-7 years fluctuations. The mechanism of SST anomalies influence on winter MAHT to the Arctic includes the interaction of atmospheric (Hadley and Ferrel circulations, jet streams, NAO) and oceanic (Gulf Stream, the North Atlantic, the Norwegian currents) circulation patterns. To justify the proposed scheme the evaluation of the links between SST anomalies, the NAO index, the Atlantic water inflow to the Barents Sea, are investigated. The study is supported with RFBR project 15-05-03512.

An Integrated Approach to Estimate Instantaneous Near-Surface Air Temperature and Sensible Heat Flux Fields during the SEMAPHORE Experiment.

NASA Astrophysics Data System (ADS)

Bourras, Denis; Eymard, Laurence; Liu, W. Timothy; Dupuis, Hélène

2002-03-01

A new technique was developed to retrieve near-surface instantaneous air temperatures and turbulent sensible heat fluxes using satellite data during the Structure des Echanges Mer-Atmosphere, Proprietes des Heterogeneites Oceaniques: Recherche Experimentale (SEMAPHORE) experiment, which was conducted in 1993 under mainly anticyclonic conditions. The method is based on a regional, horizontal atmospheric temperature advection model whose inputs are wind vectors, sea surface temperature fields, air temperatures around the region under study, and several constants derived from in situ measurements. The intrinsic rms error of the method is 0.7°C in terms of air temperature and 9 W m2 for the fluxes, both at 0.16° × 0.16° and 1.125° × 1.125° resolution. The retrieved air temperature and flux horizontal structures are in good agreement with fields from two operational general circulation models. The application to SEMAPHORE data involves the First European Remote Sensing Satellite (ERS-1) wind fields, Advanced Very High Resolution Radiometer (AVHRR) SST fields, and European Centre for Medium-Range Weather Forecasts (ECMWF) air temperature boundary conditions. The rms errors obtained by comparing the estimations with research vessel measurements are 0.3°C and 5 W m2.

Potential predictability and actual skill of Boreal Summer Tropical SST and Indian summer monsoon rainfall in CFSv2-T382: Role of initial SST and teleconnections

NASA Astrophysics Data System (ADS)

Pillai, Prasanth A.; Rao, Suryachandra A.; Das, Renu S.; Salunke, Kiran; Dhakate, Ashish

2017-10-01

The present study assess the potential predictability of boreal summer (June through September, JJAS) tropical sea surface temperature (SST) and Indian summer monsoon rainfall (ISMR) using high resolution climate forecast system (CFSv2-T382) hindcasts. Potential predictability is computed using relative entropy (RE), which is the combined effect of signal strength and model spread, while the correlation between ensemble mean and observations represents the actual skill. Both actual and potential skills increase as lead time decreases for Niño3 index and equatorial East Indian Ocean (EEIO) SST anomaly and both the skills are close to each other for May IC hindcasts at zero lead. At the same time the actual skill of ISMR and El Niño Modoki index (EMI) are close to potential skill for Feb IC hindcasts (3 month lead). It is interesting to note that, both actual and potential skills are nearly equal, when RE has maximum contribution to individual year's prediction skill and its relationship with absolute error is insignificant or out of phase. The major contribution to potential predictability is from ensemble mean and the role of ensemble spread is limited for Pacific SST and ISMR hindcasts. RE values are able to capture the predictability contribution from both initial SST and simultaneous boundary forcing better than ensemble mean, resulting in higher potential skill compared to actual skill for all ICs. For Feb IC hindcasts at 3 month lead time, initial month SST (Feb SST) has important predictive component for El Niño Modoki and ISMR leading to higher value of actual skill which is close to potential skill. This study points out that even though the simultaneous relationship between ensemble mean ISMR and global SST is similar for all ICs, the predictive component from initial SST anomalies are captured well by Feb IC (3 month lead) hindcasts only. This resulted in better skill of ISMR for Feb IC (3 month lead) hindcasts compared to May IC (0 month lead) hindcasts. Lack of proper contribution from initial SST and teleconnections induces large absolute error for ISMR in May IC hindcasts resulting in very low actual skill. Thus the use of potential predictability skill and actual skill collectively help to understand the fidelity of the model for further improvement by differentiating the role of initial SST and simultaneous boundary forcing to some extent.

Genomics in Cardiovascular Disease

PubMed Central

Roberts, Robert; Marian, A.J.; Dandona, Sonny; Stewart, Alexandre F.R.

2013-01-01

A paradigm shift towards biology occurred in the 1990’s subsequently catalyzed by the sequencing of the human genome in 2000. The cost of DNA sequencing has gone from millions to thousands of dollars with sequencing of one’s entire genome costing only $1,000. Rapid DNA sequencing is being embraced for single gene disorders, particularly for sporadic cases and those from small families. Transmission of lethal genes such as associated with Huntington’s disease can, through in-vitro fertilization, avoid passing it on to one’s offspring. DNA sequencing will meet the challenge of elucidating the genetic predisposition for common polygenic diseases, especially in determining the function of the novel common genetic risk variants and identifying the rare variants, which may also partially ascertain the source of the missing heritability. The challenge for DNA sequencing remains great, despite human genome sequences being 99.5% identical, the 3 million single nucleotide polymorphisms (SNPs) responsible for most of the unique features add up to 60 new mutations per person which, for 7 billion people, is 420 billion mutations. It is claimed that DNA sequencing has increased 10,000 fold while information storage and retrieval only 16 fold. The physician and health user will be challenged by the convergence of two major trends, whole genome sequencing and the storage/retrieval and integration of the data. PMID:23524054

Event-related potential correlates of declarative and non-declarative sequence knowledge.

PubMed

Ferdinand, Nicola K; Rünger, Dennis; Frensch, Peter A; Mecklinger, Axel

2010-07-01

The goal of the present study was to demonstrate that declarative and non-declarative knowledge acquired in an incidental sequence learning task contributes differentially to memory retrieval and leads to dissociable ERP signatures in a recognition memory task. For this purpose, participants performed a sequence learning task and were classified as verbalizers, partial verbalizers, or nonverbalizers according to their ability to verbally report the systematic response sequence. Thereafter, ERPs were recorded in a recognition memory task time-locked to sequence triplets that were either part of the previously learned sequence or not. Although all three groups executed old sequence triplets faster than new triplets in the recognition memory task, qualitatively distinct ERP patterns were found for participants with and without reportable knowledge. Verbalizers and, to a lesser extent, partial verbalizers showed an ERP correlate of recollection for parts of the incidentally learned sequence. In contrast, nonverbalizers showed a different ERP effect with a reverse polarity that might reflect priming. This indicates that an ensemble of qualitatively different processes is at work when declarative and non-declarative sequence knowledge is retrieved. By this, our findings favor a multiple-systems view postulating that explicit and implicit learning are supported by different and functionally independent systems. Copyright (c) 2010 Elsevier Ltd. All rights reserved.

Retrieval-Induced Inhibition in Short-Term Memory.

PubMed

Kang, Min-Suk; Choi, Joongrul

2015-07-01

We used a visual illusion called motion repulsion as a model system for investigating competition between two mental representations. Subjects were asked to remember two random-dot-motion displays presented in sequence and then to report the motion directions for each. Remembered motion directions were shifted away from the actual motion directions, an effect similar to the motion repulsion observed during perception. More important, the item retrieved second showed greater repulsion than the item retrieved first. This suggests that earlier retrieval exerted greater inhibition on the other item being held in short-term memory. This retrieval-induced motion repulsion could be explained neither by reduced cognitive resources for maintaining short-term memory nor by continued inhibition between short-term memory representations. These results indicate that retrieval of memory representations inhibits other representations in short-term memory. We discuss mechanisms of retrieval-induced inhibition and their implications for the structure of memory. © The Author(s) 2015.

Protein Annotators' Assistant: A Novel Application of Information Retrieval Techniques.

ERIC Educational Resources Information Center

Wise, Michael J.

2000-01-01

Protein Annotators' Assistant (PAA) is a software system which assists protein annotators in assigning functions to newly sequenced proteins. PAA employs a number of information retrieval techniques in a novel setting and is thus related to text categorization, where multiple categories may be suggested, except that in this case none of the…

Opposite Effects of Cortisol on Consolidation of Temporal Sequence Memory during Waking and Sleep

ERIC Educational Resources Information Center

Wilhelm, Ines; Wagner, Ullrich; Born, Jan

2011-01-01

Memory functions involve three stages: encoding, consolidation, and retrieval. Modulating effects of glucocorticoids (GCs) have been consistently observed for declarative memory with GCs enhancing encoding and impairing retrieval, but surprisingly, little is known on how GCs affect memory consolidation. Studies in rats suggest a beneficial effect…

Finite cell lines of turkey sperm storage tubule cells: ultrastructure and protein analysis

USDA-ARS?s Scientific Manuscript database

Cell lines of turkey sperm storage tubule (SST) epithelial cells were established. Turkey SSTs were dissected from freshly obtained uterovaginal junction (UVJ) tissue and placed in explants culture on various substrates and media. Primary cultures of SST epithelium only survived and grew from SST ex...

NCEP SST Analysis

Science.gov Websites

Branches Global Climate & Weather Modeling Mesoscale Modeling Marine Modeling and Analysis Contact EMC , state and local government Web resources and services. Real-time, global, sea surface temperature (RTG_SST_HR) analysis For a regional map, click the desired area in the global SST analysis and anomaly maps

Self-System Therapy for Distress Associated with Persistent Low Back Pain: A Randomized Clinical Trial

PubMed Central

Waters, Sandra J.; McKee, Daphne C.; Campbell, Lisa C.; Shelby, Rebecca A.; Dixon, Kim E.; Fras, Anne Marie; Keefe, Francis J.

2015-01-01

Objective Persistent low back pain (PLBP) is associated with vulnerability to depression. PLBP frequently requires major changes in occupation and lifestyle, which can lead to a sense of failing to attain one’s personal goals (self-discrepancy). Method We conducted a clinical trial to examine the efficacy of self-system therapy (SST), a brief structured therapy for depression based on self-discrepancy theory. A total of 101 patients with PLBP and clinically significant depressive symptoms were randomized either to SST, pain education, or standard care. Results Patients receiving SST showed significantly greater improvement in depressive symptoms. Reduction in self-discrepancy predicted reduction in depressive symptoms only within the SST condition. Conclusions Findings support the utility of SST for individuals facing persistent pain and associated depression. PMID:26079438

Heat flux exchange estimation by using ATSR SST data in TOGA area

NASA Astrophysics Data System (ADS)

Xue, Yong; Lawrence, Sean P.; Llewellyn-Jones, David T.

1995-12-01

The study of phenomena such as ENSO requires consideration of the dynamics and thermodynamics of the coupled ocean-atmosphere system. The dynamic and thermal properties of the atmosphere and ocean are directly affected by air-sea transfers of fluxes of momentum, heat and moisture. In this paper, we present results of turbulent heat fluxes calculated by using two years (1992 and 1993) monthly average TOGA data and ATSR SST data in TOGA area. A comparison with published results indicates good qualitative agreement. Also, we compared the results of heat flux exchange by using ATSR SST data and by using the TOGA bucket SST data. The ATSR SST data set has been shown to be useful in helping to estimate the large space scale heat flux exchange.

Assimilation for skin SST in the NASA GEOS atmospheric data assimilation system.

PubMed

Akella, Santha; Todling, Ricardo; Suarez, Max

2017-01-01

The present article describes the sea surface temperature (SST) developments implemented in the Goddard Earth Observing System, Version 5 (GEOS-5) Atmospheric Data Assimilation System (ADAS). These are enhancements that contribute to the development of an atmosphere-ocean coupled data assimilation system using GEOS. In the current quasi-operational GEOS-ADAS, the SST is a boundary condition prescribed based on the OSTIA product, therefore SST and skin SST (Ts) are identical. This work modifies the GEOS-ADAS Ts by modeling and assimilating near sea surface sensitive satellite infrared (IR) observations. The atmosphere-ocean interface layer of the GEOS atmospheric general circulation model (AGCM) is updated to include near surface diurnal warming and cool-skin effects. The GEOS analysis system is also updated to directly assimilate SST-relevant Advanced Very High Resolution Radiometer (AVHRR) radiance observations. Data assimilation experiments designed to evaluate the Ts modification in GEOS-ADAS show improvements in the assimilation of radiance observations that extends beyond the thermal IR bands of AVHRR. In particular, many channels of hyperspectral sensors, such as those of the Atmospheric Infrared Sounder (AIRS), and Infrared Atmospheric Sounding Interferometer (IASI) are also better assimilated. We also obtained improved fit to withheld, in-situ buoy measurement of near-surface SST. Evaluation of forecast skill scores show marginal to neutral benefit from the modified Ts.

Multi-species coral Sr/Ca-based sea-surface temperature reconstruction using Orbicella faveolata and Siderastrea siderea from the Florida Straits

USGS Publications Warehouse

Flannery, Jennifer A.; Richey, Julie N.; Thirumalai, Kaustubh; Poore, Richard Z.; DeLong, Kristine L.

2017-01-01

We present new, monthly-resolved Sr/Ca-based sea-surface temperature (SST) records from two species of massive coral, Orbicella faveolata and Siderastrea siderea, from the Dry Tortugas National Park, FL, USA (DTNP). We combine these new records with published data from three additional S. siderea coral colonies to generate a 278-year long multi-species stacked Sr/Ca-SST record from DTNP. The composite record of mean annual Sr/Ca-SST at DTNP shows pronounced decadal-scale variability with a range of 1 to 2°C. Notable cool intervals in the Sr/Ca-derived SST lasting about a decade centered at ~1845, ~1935, and ~1965 are associated with reduced summer Sr/Ca-SST (monthly maxima < 29°C), and imply a reduction in the spatial extent of the Atlantic Warm Pool (AWP). There is significant coherence between the composite DTNP Sr/Ca-SST record and the Atlantic Multidecadal Oscillation (AMO) index, with the AMO lagging Sr/Ca-SST at DTNP by 9 years. Low frequency variability in the Gulf Stream surface transport, which originates near DTNP, may provide a link for the lagged relationship between multidecadal variability at DTNP and the AMO.

Somatostatin and Somatostatin Receptor Gene Expression in Dominant and Subordinate Males of an African Cichlid Fish

PubMed Central

Trainor, Brian C.; Hofmann, Hans A.

2009-01-01

Somatostatin is a neuropeptide best known for its inhibitory effects on growth hormone secretion and has recently been implicated in the control of social behavior. Several somatostatin receptor subtypes have been identified in vertebrates, but the functional basis for this diversity is still unclear. Here we investigate the expression levels of the somatostatin prepropeptide and two of its receptors, sstR2, and sstR3, in the brains of socially dominant and subordinate A. burtoni males using real-time PCR. Dominant males had higher somatostatin prepropeptide and sstR3 expression in hypothalamus compared to subordinate males. Hypothalamic sstR2 expression did not differ. There were no differences in gene expression in the telencephalon. We also observed an interesting difference between dominants and subordinates in the relationship between hypothalamic sstR2 expression and body size. As would be predicted based on the inhibitory effects of somatostatin on somatic growth, sstR2 expression was negatively correlated with body size in dominant males. In contrast sstR2 expression was positively correlated with body size in subordinate males. These results suggest that somatostatin prepropeptide and receptor gene expression in the hypothalamus are associated with the control of somatic growth in A. burtoni depending on social status. PMID:17374406

Assimilation for Skin SST in the NASA GEOS Atmospheric Data Assimilation System

NASA Technical Reports Server (NTRS)

Akella, Santha; Todling, Ricardo; Suarez, Max

2017-01-01

The present article describes the sea surface temperature (SST) developments implemented in the Goddard Earth Observing System, Version 5 (GEOS) Atmospheric Data Assimilation System (ADAS). These are enhancements that contribute to the development of an atmosphere-ocean coupled data assimilation system using GEOS. In the current quasi-operational GEOS-ADAS, the SST is a boundary condition prescribed based on the OSTIA product, therefore SST and skin SST (Ts) are identical. This work modifies the GEOS-ADAS Ts by modelling and assimilating near sea surface sensitive satellite infrared (IR) observations. The atmosphere-ocean interface layer of the GEOS atmospheric general circulation model (AGCM) is updated to include near-surface diurnal warming and cool-skin effects. The GEOS analysis system is also updated to directly assimilate SST-relevant Advanced Very High Resolution Radiometer (AVHRR) radiance observations. Data assimilation experiments designed to evaluate the Ts modification in GEOS-ADAS show improvements in the assimilation of radiance observations that extend beyond the thermal infrared bands of AVHRR. In particular, many channels of hyperspectral sensors, such as those of the Atmospheric Infrared Sounder (AIRS), and Infrared Atmospheric Sounding Interferometer (IASI) are also better assimilated. We also obtained improved fit to withheld insitu buoy measurement of near-surface SST. Evaluation of forecast skill scores show neutral to marginal benefit from the modified Ts.

Optogenetic and pharmacological evidence that somatostatin-GABA neurons are important regulators of parasympathetic outflow to the stomach.

PubMed

Lewin, Amanda E; Vicini, Stefano; Richardson, Janell; Dretchen, Kenneth L; Gillis, Richard A; Sahibzada, Niaz

2016-05-15

The dorsal motor nucleus of the vagus (DMV) in the brainstem consists primarily of vagal preganglionic neurons that innervate postganglionic neurons of the upper gastrointestinal tract. The activity of the vagal preganglionic neurons is predominantly regulated by GABAergic transmission in the DMV. The present findings indicate that the overwhelming GABAergic drive present at the DMV is primarily from somatostatin positive GABA (Sst-GABA) DMV neurons. Activation of both melanocortin and μ-opioid receptors at the DMV inhibits Sst-GABA DMV neurons. Sst-GABA DMV neurons may serve as integrative targets for modulating vagal output activity to the stomach. We have previously shown that local GABA signalling in the brainstem is an important determinant of vagally-mediated gastric activity. However, the neural identity of this GABA source is currently unknown. To determine this, we focused on the somatostatin positive GABA (Sst-GABA) interneuron in the dorsal motor nucleus of the vagus (DMV), a nucleus that is intimately involved in regulating gastric activity. Also of particular interest was the effect of melanocortin and μ-opioid agonists on neural activity of Sst-GABA DMV neurons because their in vivo administration in the DMV mimics GABA blockade in the nucleus. Experiments were conducted in brain slice preparation of transgenic adult Sst-IRES-Cre mice expressing tdTomato fluorescence, channelrhodopsin-2, archaerhodopsin or GCaMP3. Electrophysiological recordings were obtained from Sst-GABA DMV neurons or DiI labelled gastric-antrum projecting DMV neurons. Our results show that optogenetic stimulation of Sst-GABA neurons results in a robust inhibition of action potentials of labelled premotor DMV neurons to the gastric-antrum through an increase in inhibitory post-synaptic currents. The activity of the Sst-GABA neurons in the DMV is inhibited by both melanocortin and μ-opioid agonists. These agonists counteract the pronounced inhibitory effect of Sst-GABA neurons on vagal pre-motor neurons in the DMV that control gastric motility. These observations demonstrate that Sst-GABA neurons in the brainstem are crucial for regulating the activity of gastric output neurons in the DMV. Additionally, they suggest that these neurons serve as targets for converging CNS signals to regulate parasympathetic gastric function. © 2016 The Authors. The Journal of Physiology © 2016 The Physiological Society.

Solid-state dosimeters: A new approach for mammography measurements

DOE Office of Scientific and Technical Information (OSTI.GOV)

Brateman, Libby F., E-mail: bratel@radiology.ufl.edu; Heintz, Philip H.

2015-02-15

Purpose: To compare responses of modern commercially available solid-state dosimeters (SStDs) used in mammography medical physics surveys for two major vendors of current digital mammography units. To compare differences in dose estimates among SStD responses with ionization chamber (IC) measurements for several target/filter (TF) combinations and report their characteristics. To review scientific bases for measurements of quantities required for mammography for traditional measurement procedures and SStDs. Methods: SStDs designed for use with modern digital mammography units were acquired for evaluation from four manufacturers. Each instrument was evaluated under similar conditions with the available mammography beams provided by two modern full-fieldmore » digital mammography units in clinical use: a GE Healthcare Senographe Essential (Essential) and a Hologic Selenia Dimensions 5000 (Dimensions), with TFs of Mo/Mo, Mo/Rh; and Rh/Rh and W/Rh, W/Ag, and W/Al, respectively. Measurements were compared among the instruments for the TFs over their respective clinical ranges of peak tube potentials for kVp and half-value layer (HVL) measurements. Comparisons for air kerma (AK) and their associated relative calculated average glandular doses (AGDs), i.e., using fixed mAs, were evaluated over the limited range of 28–30 kVp. Measurements were compared with reference IC measurements for AK, reference HVLs and calculated AGD, for two compression paddle heights for AK, to evaluate scatter effects from compression paddles. SStDs may require different positioning from current mammography measurement protocols. Results: Measurements of kVp were accurate in general for the SStDs (within −1.2 and +1.1 kVp) for all instruments over a wide range of set kVp’s and TFs and most accurate for Mo/Mo and W/Rh. Discrepancies between measurements and reference values were greater for HVL and AK. Measured HVL values differed from reference values by −6.5% to +3.5% depending on the SStD and TF. AK measurements over limited (28–30) kVp’s ranged from −6% to +7% for SStDs, compared with IC reference values. Relative AGDs for each SStD using its associated measurements of kVp, HVL and AK underestimated AGD in nearly all cases, compared with reference IC values, with discrepancies of <−1% to ∼−10%. Some differences in AGD were related to differences in contributions of compression paddle scatter to AK measurements made by ICs. Applying measured factors for scatter effects in AK measurements for three SStDs reduced discrepancies between −6.2% and +1.3%, shifting AGDs from SStDs closer to IC AGDs. Conclusions: This study revealed that SStD measurements yielded good agreement with set kVp, poor agreement with standard HVL determinations, and AK measurements that were substantially different from IC measurements. Discrepancies are partly related to the scattered radiation measured by ICs in determining AK. As a result, IC measurements required for AGD, using currently accepted methodology, typically result in higher AGDs than SStDs, because current methodologies do not account for differing instrument responses to scatter. HVLs reported by SStDs contribute to discrepancies in calculated AGD that depend on kVp and TF. Medical physicists are encouraged to compare their results for SStD instruments using a similar methodology for potential discrepancies with their traditional instruments.« less

DOE Office of Scientific and Technical Information (OSTI.GOV)

Xue, Yongkang; De Sales, Fernando; Lau, William K. -M.

The Sahel climate system had experienced one of the strongest interdecadal climate variabilities and the longest drought on the planet in the twentieth century. Most modeling studies on the decadal variability of the Sahel climate so far have focused on the role of anomalies in either sea surface temperature (SST), land surface processes, or aerosols concentration. The Second West African Monsoon Modeling and Evaluation Project Experiment (WAMME II) is designed to improve understanding of the possible roles and feedback of SST, land use land cover change (LULCC), and aerosols forcings in the Sahel climate system at seasonal to decadal scales.more » The WAMME II strategy is to apply observationally based anomaly forcing, i.e., “idealized but realistic” forcing, in simulations by general circulation models’ (GCMs) and regional climate models’ (RCMs) to test the relative impacts of such forcings in producing/amplifying the Sahelian seasonal and decadal climate variability, including the 20th century drought. To test individual ocean’s SST effect, a special approach in the experimental design is taken to avoid undermine its effect. This is the first multi-model experiment specifically designed to simultaneously evaluate relative contributions of multiple-external forcings to the Sahel drought. This paper presents the major results and preliminary findings of the WAMME II SST experiment, including each ocean’s contribution to the global SST effect, as well as comparison of the SST effect with the LULCC effect. The common empirical orthogonal functions and other analyses are applied to assess and comprehend the discrepancies among the models. In general, the WAMME II models have reached a consensus on SST’s major contribution to the great Sahel drought and show that with the maximum possible SST forcing, it can produce up to 60% of the absolute amount of precipitation difference between the 1980s and the 1950s. This paper has 3 also delineated the role of SSTs in triggering and maintaining the Sahel drought, suggesting a potential predictability of WAM development linked to SST. Among different ocean basins, the Pacific and Indian Ocean SSTs have the greatest impact on the 1980s drought. The WAMME II, however, fails to reach a consensus on the role of the Mediterranean Sea SST. The changes in circulation, moisture flux convergence, and associated surface energy balances are the main mechanisms for the SST effect. The paper also compares the SST effect with the LULCC effects. It is shown that the prescribed land forcing produces about 40% of the precipitation difference between the 1980s and the 1950s, which is less than SST contribution but still of first order in the Sahel climate system. The role of land surface processes in responding to and amplifying the drought has also been identified. The results demonstrate that catastrophic consequences likely occur in the regional climate when SST anomalies in individual ocean basins and in land conditions combine synergistically to favor drought. Due to limited ensemble members, aerosol effects are not compared. Since the SST and land forcing in the real world are likely smaller than specified in this study, further investigations on the effects of aerosols as well as of other external forcings, such as greenhouse gases, and of atmospheric internal variability, are necessary. Moreover, although the WAMEE II models support a general consensus on SST and LULCC effects, there are still large discrepancies in how these models produce the Sahel drought in the 1980s. Better atmospheric observational and analysis data including more processes and components are necessary to validate and constrain models, and to guide further model development and improvement.« less

Protein expression and genetic variability of canine Can f 1 in golden and Labrador retriever service dogs.

PubMed

Breitenbuecher, Christina; Belanger, Janelle M; Levy, Kerinne; Mundell, Paul; Fates, Valerie; Gershony, Liza; Famula, Thomas R; Oberbauer, Anita M

2016-01-01

Valued for trainability in diverse tasks, dogs are the primary service animal used to assist individuals with disabilities. Despite their utility, many people in need of service dogs are sensitive to the primary dog allergen, Can f 1, encoded by the Lipocalin 1 gene (LCN1). Several organizations specifically breed service dogs to meet special needs and would like to reduce allergenic potential if possible. In this study, we evaluated the expression of Can f 1 protein and the inherent variability of LCN1 in two breeds used extensively as service dogs. Saliva samples from equal numbers of male and female Labrador retrievers (n = 12), golden retrievers (n = 12), and Labrador-golden crosses (n = 12) were collected 1 h after the morning meal. Can f 1 protein concentrations in the saliva were measured by ELISA, and the LCN1 5' and 3' UTRs and exons sequenced. There was no sex effect (p > 0.2) nor time-of-day effect; however, Can f 1 protein levels varied by breed with Labrador retrievers being lower than golden retrievers (3.18 ± 0.51 and 5.35 ± 0.52 μg/ml, respectively, p < 0.0075), and the Labrador-golden crosses having intermediate levels (3.77 ± 0.48 μg/ml). Although several novel SNPs were identified in LCN1, there were no significant breed-specific sequence differences in the gene and no association of LCN1 genotypes with Can f 1 expression. As service dogs, Labrador retrievers likely have lower allergenic potential and, though there were no DNA sequence differences identified, classical genetic selection on the estimated breeding values associated with salivary Can f 1 expression may further reduce that potential.

Epilithic Cyanobacterial Communities of a Marine Tropical Beach Rock (Heron Island, Great Barrier Reef): Diversity and Diazotrophy▿

PubMed Central

Díez, Beatriz; Bauer, Karolina; Bergman, Birgitta

2007-01-01

The diversity and nitrogenase activity of epilithic marine microbes in a Holocene beach rock (Heron Island, Great Barrier Reef, Australia) with a proposed biological calcification “microbialite” origin were examined. Partial 16S rRNA gene sequences from the dominant mat (a coherent and layered pink-pigmented community spread over the beach rock) and biofilms (nonstratified, differently pigmented microbial communities of small shallow depressions) were retrieved using denaturing gradient gel electrophoresis (DGGE), and a clone library was retrieved from the dominant mat. The 16S rRNA gene sequences and morphological analyses revealed heterogeneity in the cyanobacterial distribution patterns. The nonheterocystous filamentous genus Blennothrix sp., phylogenetically related to Lyngbya, dominated the mat together with unidentified nonheterocystous filaments of members of the Pseudanabaenaceae and the unicellular genus Chroococcidiopsis. The dominance and three-dimensional intertwined distribution of these organisms were confirmed by nonintrusive scanning microscopy. In contrast, the less pronounced biofilms were dominated by the heterocystous cyanobacterial genus Calothrix, two unicellular Entophysalis morphotypes, Lyngbya spp., and members of the Pseudanabaenaceae family. Cytophaga-Flavobacterium-Bacteroides and Alphaproteobacteria phylotypes were also retrieved from the beach rock. The microbial diversity of the dominant mat was accompanied by high nocturnal nitrogenase activities (as determined by in situ acetylene reduction assays). A new DGGE nifH gene optimization approach for cyanobacterial nitrogen fixers showed that the sequences retrieved from the dominant mat were related to nonheterocystous uncultured cyanobacterial phylotypes, only distantly related to sequences of nitrogen-fixing cultured cyanobacteria. These data stress the occurrence and importance of nonheterocystous epilithic cyanobacteria, and it is hypothesized that such epilithic cyanobacteria are the principal nitrogen fixers of the Heron Island beach rock. PMID:17416688

Decadal variability of the Tropical Atlantic Ocean Surface Temperature in shipboard measurements and in a Global Ocean-Atmosphere model

NASA Technical Reports Server (NTRS)

Mehta, Vikram M.; Delworth, Thomas

1995-01-01

Sea surface temperature (SST) variability was investigated in a 200-yr integration of a global model of the coupled oceanic and atmospheric general circulations developed at the Geophysical Fluid Dynamics Laboratory (GFDL). The second 100 yr of SST in the coupled model's tropical Atlantic region were analyzed with a variety of techniques. Analyses of SST time series, averaged over approximately the same subregions as the Global Ocean Surface Temperature Atlas (GOSTA) time series, showed that the GFDL SST anomalies also undergo pronounced quasi-oscillatory decadal and multidecadal variability but at somewhat shorter timescales than the GOSTA SST anomalies. Further analyses of the horizontal structures of the decadal timescale variability in the GFDL coupled model showed the existence of two types of variability in general agreement with results of the GOSTA SST time series analyses. One type, characterized by timescales between 8 and 11 yr, has high spatial coherence within each hemisphere but not between the two hemispheres of the tropical Atlantic. A second type, characterized by timescales between 12 and 20 yr, has high spatial coherence between the two hemispheres. The second type of variability is considerably weaker than the first. As in the GOSTA time series, the multidecadal variability in the GFDL SST time series has approximately opposite phases between the tropical North and South Atlantic Oceans. Empirical orthogonal function analyses of the tropical Atlantic SST anomalies revealed a north-south bipolar pattern as the dominant pattern of decadal variability. It is suggested that the bipolar pattern can be interpreted as decadal variability of the interhemispheric gradient of SST anomalies. The decadal and multidecadal timescale variability of the tropical Atlantic SST, both in the actual and in the GFDL model, stands out significantly above the background 'red noise' and is coherent within each of the time series, suggesting that specific sets of processes may be responsible for the choice of the decadal and multidecadal timescales. Finally, it must be emphasized that the GFDL coupled ocean-atmosphere model generates the decadal and multidecadal timescale variability without any externally applied force, solar or lunar, at those timescales.

A randomized controlled study of a social skills training for preadolescent children with autism spectrum disorders: generalization of skills by training parents and teachers?

PubMed Central

2014-01-01

Background Social skills training (SST) is a common intervention for children with autism spectrum disorders (ASDs) to improve their social and communication skills. Despite the fact that SSTs are often applied in clinical practice, the evidence for the effectiveness of these trainings for children with ASD is inconclusive. Moreover, long term outcome and generalization of learned skills are little evaluated. Additionally, there is no research on the influence of involvement of parents and teachers on effectiveness of SST and on the generalization of learned social skills to daily life. We expect parent and teacher involvement in SST to enhance treatment efficacy and to facilitate generalization of learned skills to daily life. Method/Design In a randomized controlled trial (RCT) with three conditions, 120 participants with ASD at the end of primary school (10–12 years of calendar age) have been randomized to SST, SST-PTI (SST with Parent & Teacher Involvement), or care-as-usual. The SST consists of 18 group sessions of 1.5 hours for the children. In the SST-PTI condition, parents additionally participate in 8 parent sessions and parents and teachers are actively involved in homework assignments. Assessment takes place at three moments: before and immediately after the intervention period and at 6 months follow-up. Primary outcome is socialization, as an aspect of adaptive functioning. Secondary outcomes focus on specific social skills children learn during SST and on more general social skills pertaining to home and community settings from a multi-informant perspective. Additionally, possible predictors of treatment outcome will be assessed. Discussion The current study is an RCT study evaluating SST in a large sample of Dutch children with ASD in a specific age range (10–12 years). Strengths of the study are the use of one manualized protocol, application of standardized and internationally used rating instruments, use of multiple raters, investigation of generalization of learned skills to daily life, and the evaluation of efficacy in the longer term by follow-up measures at 6 months after the end of training. Trial registration NTR2405 PMID:24989854

Immediate effects of different schedules of somatostatin on portal pressure in patients with liver cirrhosis.

PubMed

Zhang, C; Xu, J-M; Kong, D-R; Min, X-K; Chen, R

2013-06-01

Somatostatin (SST) is used for the treatment of acute variceal bleeding based on its ability to decrease portal pressure and collateral blood flow. To date, no studies have focused on the immediate-early effects (between 1 and 30 min) of SST. The aim of this study was to compare the efficacy of different schedules of SST therapy with placebo on portal pressure in patients with portal hypertension treated with portal-azygous disconnection and to test whether an increase in bolus or infusion dose can improve the clinical efficacy of SST therapy.   Patients were treated with four different schedules: (a) standard dose (n = 11): one 250 μg bolus + a continuous infusion of 250 μg/h; (b) medium dose (n = 10): 500 μg bolus + a continuous infusion of 250 μg/h; (c) high dose (n = 10): 250 μg bolus + a continuous infusion of 500 μg/h; (d) control (n = 10): an injection of placebo (saline) followed by a placebo infusion. Following SST or placebo administration, portal pressure, central venous pressure (CVP), systemic blood pressure and heart rate (HR) were measured at 1, 3, 5, 7, 10 and 30 min.   The three schedules of SST induced a marked, rapid and highly significant decrease in portal pressure. The decline in portal pressure was moderate at 1 min (P < 0·040), achieved a peak effect at 5 min (P < 0·009) and remained decreased at 30 min. The effect of SST on portal pressure was significantly greater than placebo from 1 min after administration. There were no significant differences in portal pressure decrease between the three schedules of SST. The three schedules of SST and the placebo schedule did not induce significant changes in HR, systemic blood pressure and CVP.   This study shows that SST is effective in decreasing portal pressure within 30 min of administration in patients with liver cirrhosis. The clinical schedule used in this study was reasonable and safe. © 2013 Blackwell Publishing Ltd.

Homologous upregulation of sst2 somatostatin receptor expression in the rat arcuate nucleus in vivo.

PubMed

Tannenbaum, G S; Turner, J; Guo, F; Videau, C; Epelbaum, J; Beaudet, A

2001-07-01

In vitro studies using various cell systems have provided conflicting results regarding homologous regulation of somatostatin (SRIH) receptors, and information on whether SRIH regulates the expression of its own receptors in vivo is lacking. In the present study we examined, by in situ hybridization, the effects of pretreatment with the sst2-preferring SRIH analog, octreotide, in vivo, on mRNA levels of two SRIH receptor subtypes, sst1 and sst2, in rat brain and pituitary. (125)I-[DTrp(8)]-SRIH binding was also measured in these regions. Three hours after the iv injection of 50 microg octreotide to conscious adult male rats, there was a 46% increase (p < 0.01) in the labeling density of sst2 mRNA-expressing cells in the hypothalamic arcuate nucleus compared to normal saline-pretreated controls, but not in any of the other brain regions examined. Computer-assisted image analysis revealed that 3 h exposure to octreotide significantly (p < 0.01) augmented both the number and labeling density of sst2 mRNA-expressing cells in the arcuate nucleus, compared to those in saline-treated controls. By contrast, within the anterior pituitary gland, in vivo exposure to octreotide did not affect the expression of sst2 mRNA. No changes in sst1 mRNA-expressing cells were observed after octreotide treatment in any of the regions measured, indicating that the observed effects were homologous, i.e. specific of the receptor subtype stimulated. Octreotide pretreatment was also without effect on the density of (125)I-[DTrp(8)]-SRIH binding in either the arcuate nucleus or pituitary. These results demonstrate, for the first time, that SRIH preexposure in vivo upregulates the expression of a subtype of its own receptors, sst2, within the central nervous system. They further suggest that pretreatment with SRIH in vivo does not cause sst2 receptor desensitization in arcuate nucleus and pituitary. Such homologous regulatory mechanisms may play an important role in the neuroendocrine control of growth hormone (GH) secretion by the arcuate nucleus. Copyright 2001 S. Karger AG, Basel

The General Circulation Model Response to a North Pacific SST Anomaly: Dependence on Time Scale and Pattern Polarity.

NASA Astrophysics Data System (ADS)

Kushnir, Yochanan; Lau, Ngar-Cheung

1992-04-01

A general circulation model was integrated with perpetual January conditions and prescribed sea surface temperature (SST) anomalies in the North Pacific. A characteristic pattern with a warm region centered northeast of Hawaii and a cold region along the western seaboard of North America was alternately added to and subtracted from the climatological SST field. Long 1350-day runs, as well as short 180-day runs, each starting from different initial conditions, were performed. The results were compared to a control integration with climatological SSTs.The model's quasi-stationary response does not exhibit a simple linear relationship with the polarity of the prescribed SST anomaly. In the short runs with a negative SST anomaly over the central ocean, a large negative height anomaly, with an equivalent barotropic vertical structure, occurs over the Gulf of Alaska. For the same SST forcing, the long run yields a different response pattern in which an anomalous high prevails over northern Canada and the Alaskan Peninsula. A significant reduction in the northward heat flux associated with baroclinic eddies and a concomitant reduction in convective heating occur along the model's Pacific storm track. In the runs with a positive SST anomaly over the central ocean, the average height response during the first 90-day period of the short runs is too weak to be significant. In the subsequent 90-day period and in the long run an equivalent barotropic low occurs downstream from the warm SST anomaly. All positive anomaly runs exhibit little change in baroclinic eddy activity or in the patterns of latent heat release. Horizontal momentum transports by baroclinic eddies appear to help sustain the quasi-stationary response in the height field regardless of the polarity of the SST anomaly. These results emphasize the important role played by baroclinic eddies in determining the quasi-stationary response to midlatitude SST anomalies. Differences between the response patterns of the short and long integrations may be relevant to future experimental design for studying air-sea interactions in the extratropies.

Analysis of Ultra High Resolution Sea Surface Temperature Level 4 Datasets

NASA Technical Reports Server (NTRS)

Wagner, Grant

2011-01-01

Sea surface temperature (SST) studies are often focused on improving accuracy, or understanding and quantifying uncertainties in the measurement, as SST is a leading indicator of climate change and represents the longest time series of any ocean variable observed from space. Over the past several decades SST has been studied with the use of satellite data. This allows a larger area to be studied with much more frequent measurements being taken than direct measurements collected aboard ship or buoys. The Group for High Resolution Sea Surface Temperature (GHRSST) is an international project that distributes satellite derived sea surface temperatures (SST) data from multiple platforms and sensors. The goal of the project is to distribute these SSTs for operational uses such as ocean model assimilation and decision support applications, as well as support fundamental SST research and climate studies. Examples of near real time applications include hurricane and fisheries studies and numerical weather forecasting. The JPL group has produced a new 1 km daily global Level 4 SST product, the Multiscale Ultrahigh Resolution (MUR), that blends SST data from 3 distinct NASA radiometers: the Moderate Resolution Imaging Spectroradiometer (MODIS), the Advanced Very High Resolution Radiometer (AVHRR), and the Advanced Microwave Scanning Radiometer ? Earth Observing System(AMSRE). This new product requires further validation and accuracy assessment, especially in coastal regions.We examined the accuracy of the new MUR SST product by comparing the high resolution version and a lower resolution version that has been smoothed to 19 km (but still gridded to 1 km). Both versions were compared to the same data set of in situ buoy temperature measurements with a focus on study regions of the oceans surrounding North and Central America as well as two smaller regions around the Gulf Stream and California coast. Ocean fronts exhibit high temperature gradients (Roden, 1976), and thus satellite data of SST can be used in the detection of these fronts. In this case, accuracy is less of a concern because the primary focus is on the spatial derivative of SST. We calculated the gradients for both versions of the MUR data set and did statistical comparisons focusing on the same regions.

A randomized controlled study of a social skills training for preadolescent children with autism spectrum disorders: generalization of skills by training parents and teachers?

PubMed

Dekker, Vera; Nauta, Maaike H; Mulder, Erik J; Timmerman, Marieke E; de Bildt, Annelies

2014-07-02

Social skills training (SST) is a common intervention for children with autism spectrum disorders (ASDs) to improve their social and communication skills. Despite the fact that SSTs are often applied in clinical practice, the evidence for the effectiveness of these trainings for children with ASD is inconclusive. Moreover, long term outcome and generalization of learned skills are little evaluated. Additionally, there is no research on the influence of involvement of parents and teachers on effectiveness of SST and on the generalization of learned social skills to daily life. We expect parent and teacher involvement in SST to enhance treatment efficacy and to facilitate generalization of learned skills to daily life. In a randomized controlled trial (RCT) with three conditions, 120 participants with ASD at the end of primary school (10-12 years of calendar age) have been randomized to SST, SST-PTI (SST with Parent & Teacher Involvement), or care-as-usual. The SST consists of 18 group sessions of 1.5 hours for the children. In the SST-PTI condition, parents additionally participate in 8 parent sessions and parents and teachers are actively involved in homework assignments. Assessment takes place at three moments: before and immediately after the intervention period and at 6 months follow-up. Primary outcome is socialization, as an aspect of adaptive functioning. Secondary outcomes focus on specific social skills children learn during SST and on more general social skills pertaining to home and community settings from a multi-informant perspective. Additionally, possible predictors of treatment outcome will be assessed. The current study is an RCT study evaluating SST in a large sample of Dutch children with ASD in a specific age range (10-12 years). Strengths of the study are the use of one manualized protocol, application of standardized and internationally used rating instruments, use of multiple raters, investigation of generalization of learned skills to daily life, and the evaluation of efficacy in the longer term by follow-up measures at 6 months after the end of training. NTR2405.

An Assessment of the Subseasonal Forecast Performance in the Extended Global Ensemble Forecast System (GEFS)

NASA Astrophysics Data System (ADS)

Sinsky, E.; Zhu, Y.; Li, W.; Guan, H.; Melhauser, C.

2017-12-01

Optimal forecast quality is crucial for the preservation of life and property. Improving monthly forecast performance over both the tropics and extra-tropics requires attention to various physical aspects such as the representation of the underlying SST, model physics and the representation of the model physics uncertainty for an ensemble forecast system. This work focuses on the impact of stochastic physics, SST and the convection scheme on forecast performance for the sub-seasonal scale over the tropics and extra-tropics with emphasis on the Madden-Julian Oscillation (MJO). A 2-year period is evaluated using the National Centers for Environmental Prediction (NCEP) Global Ensemble Forecast System (GEFS). Three experiments with different configurations than the operational GEFS were performed to illustrate the impact of the stochastic physics, SST and convection scheme. These experiments are compared against a control experiment (CTL) which consists of the operational GEFS but its integration is extended from 16 to 35 days. The three configurations are: 1) SPs, which uses a Stochastically Perturbed Physics Tendencies (SPPT), Stochastic Perturbed Humidity (SHUM) and Stochastic Kinetic Energy Backscatter (SKEB); 2) SPs+SST_bc, which uses a combination of SPs and a bias-corrected forecast SST from the NCEP Climate Forecast System Version 2 (CFSv2); and 3) SPs+SST_bc+SA_CV, which combines SPs, a bias-corrected forecast SST and a scale aware convection scheme. When comparing to the CTL experiment, SPs shows substantial improvement. The MJO skill has improved by about 4 lead days during the 2-year period. Improvement is also seen over the extra-tropics due to the updated stochastic physics, where there is a 3.1% and a 4.2% improvement during weeks 3 and 4 over the northern hemisphere and southern hemisphere, respectively. Improvement is also seen when the bias-corrected CFSv2 SST is combined with SPs. Additionally, forecast performance enhances when the scale aware convection scheme (SPs+SST_bc+SA_CV) is added, especially over the tropics. Among the three experiments, the SPs+SST_bc+SA_CV is the best configuration in MJO forecast skill.

A Multi-Proxy Approach to Reconstruct Climate Variability in the Western Mediterranean across the Penultimate and Last Glacial Period

NASA Astrophysics Data System (ADS)

Dixit, Y.; Toucanne, S.; Bonnin, L.; Fontanier, C.; Jouet, G.; Tripati, A. K.

2016-12-01

The Mediterranean as a model miniature ocean is an ideal study area for the links between climate change and anoxia. Organic rich-sapropelic deposits punctuate Quaternary sediments series in the basin. These deposits reveal the occurrence of anoxic conditions during times when the circulation of the Mediterranean ocean was deeply perturbed. The `'Nilotic paradigm' proposes anoxia was a direct result of massive inputs of fresh water from the Nile. It is also possible that these sapropels could occur in response to periods of intense rainfall and riverine discharge on the northern Mediterranean coast. To resolve the sequence of events linked to sapropel deposition in the western Mediterranean, we use a multi-proxy (oxygen and carbon isotopes, benthic foraminifera assemblage and trace element geochemistry of foraminifera calcite) approach to examine sediments from the Tyrhennian Sea off the eastern Corsica margin in order to reconstruct climate variability during the penultimate glacial termination, and we compare results to those for the last glacial period. Our preliminary results show increased abundance of epifaunal and deep infaunal benthic species during MIS 5e ( 122-125 kyr BP), accompanied by a rise in Mg/Ca-based sea surface temperature (SST) using G. bulloides. A sharp decline in SST at 135 kyr BP coincides with Heinrich Stadial 5 in the North Atlantic. We will compare the timing of Mg/Ca-based SST minima and reconstructed water d18O variations to Heinrich Stadials in the North Atlantic in order to infer the mechanisms responsible for cooling in the Tyrrhenian Sea. This analysis should shed light on the proposed atmospheric teleconnection causing cooling of western Mediterranean waters via intensification of the Northern Hemisphere high-latitude wind systems.

Oceanic Feedback to the Madden-Julian Oscillation: Mixing's Critical Role

NASA Astrophysics Data System (ADS)

Moum, J. N.; Pujiana, K.; Lien, R. C.; Smyth, W.

2016-02-01

The Madden-Julian Oscillation (MJO) in the Indian Ocean is a large-scale, propagating atmospheric disturbance in the equatorial latitude band characterized by reduced outgoing longwave radiation due to deep atmospheric convection, and at the surface by intense westerly wind bursts and a change in sign of the net surface heat flux. The ocean response is the formation of a near-surface Yoshida-Wyrtki Jet, which accelerates almost in balance with the surface wind stress. High shear at the Jet's base drives intense turbulence, both of which continue long after the atmospheric disturbance has passed (Moum et al., 2014). The sequence of MJOs observed in the 2011-2012 DYNAMO experiment suggested the possibility that the greater mixing due to more intense MJO wind bursts might reduce SST recovery rates following MJO passage, thus reducing upper ocean heat content available to drive future atmospheric convection. We have tested this with a statistical analysis of less-complete historical observations of MJOs documenting 50 previous events. Our analysis shows that 1) SST increases more rapidly following weak MJOs than strong MJOs, and within a 60-day window, 2) weak MJOs follow strong MJOs (and do not follow weak MJOs), 3) strong MJOs follow weak MJOs (and do not follow strong MJOs). We hypothesize that these results are the consequence of Jet-forced variations in subsurface mixing on SST recovery rates, thereby providing direct feedback to subsequent MJOs. Moum, J.N., S.P. de Szoeke, W.D. Smyth, J.B. Edson, H.L. DeWitt, A.J. Moulin, E.J. Thompson, C.J. Zappa, S.A. Rutledge, R.H. Johnson and C.W. Fairall, 2014. Air-sea interactions from westerly wind bursts during the November 2011 MJO in the Indian Ocean. Bull.Am.Met.Soc., 95, 1185-1199.

Data-Model Comparison of Pliocene Sea Surface Temperature

NASA Astrophysics Data System (ADS)

Dowsett, H. J.; Foley, K.; Robinson, M. M.; Bloemers, J. T.

2013-12-01

The mid-Piacenzian (late Pliocene) climate represents the most geologically recent interval of long-term average warmth and shares similarities with the climate projected for the end of the 21st century. As such, its fossil and sedimentary record represents a natural experiment from which we can gain insight into potential climate change impacts, enabling more informed policy decisions for mitigation and adaptation. We present the first systematic comparison of Pliocene sea surface temperatures (SST) between an ensemble of eight climate model simulations produced as part of PlioMIP (Pliocene Model Intercomparison Project) and the PRISM (Pliocene Research, Interpretation and Synoptic Mapping) Project mean annual SST field. Our results highlight key regional (mid- to high latitude North Atlantic and tropics) and dynamic (upwelling) situations where there is discord between reconstructed SST and the PlioMIP simulations. These differences can lead to improved strategies for both experimental design and temporal refinement of the palaeoenvironmental reconstruction. Scatter plot of multi-model-mean anomalies (squares) and PRISM3 data anomalies (large blue circles) by latitude. Vertical bars on data anomalies represent the variability of warm climate phase within the time-slab at each locality. Small colored circles represent individual model anomalies and show the spread of model estimates about the multi-model-mean. While not directly comparable in terms of the development of the means nor the meaning of variability, this plot provides a first order comparison of the anomalies. Encircled areas are a, PRISM low latitude sites outside of upwelling areas; b, North Atlantic coastal sequences and Mediterranean sites; c, large anomaly PRISM sites from the northern hemisphere. Numbers identify Ocean Drilling Program sites.

Sr/Ca and stable isotopes in a coral from the Venezuelan coast: A record of 20th-century changes in SST, SSS and cloud cover?

NASA Astrophysics Data System (ADS)

Hetzinger, S.; Pfeiffer, M.; Dullo, W.; Zinke, J.; Garbe-Schoenberg, C.

2011-12-01

We present a record of monthly δ18O and Sr/Ca variations in coral aragonite from a massive Diploria strigosa colony retrieved from a coastal NW-Venezuelan reef site (10.55°N, 67.24°W; 1940-2004). Linear regression of coral proxies to high resolution satellite sea surface temperature (SST) data (NASA OBPG MODIS-Aqua, 9-km resolution) demonstrates that both geochemical proxies record seasonal temperature variability in ambient seawater (Sr/Ca: r=-0.68 monthly, r=-0.60 annual; δ18O: r=-0.57 monthly, r=-0.46 annual; 1985-2004). On longer time scales both proxies record local as well as regional SST dynamics in the southeastern Caribbean and northern North Tropical Atlantic. A statistically significant relationship is observed between coral δ18O and local air temperature (r=-0.56; 1951-2002), while correspondence of δ18O to SST products (e.g. ERSST, SODA reanalysis) is lower than for Sr/Ca ratios. However, coral δ18O is a function of both temperature and δ18Oseawater and δ18Oseawater in turn is dependent on salinity. A comparison of δ18O to sea surface salinity (SSS) data confirms the existence of a strong salinity component in coral δ18O on annual and longer time scales (SODA reanalysis, r=0.65 for annual means, r=0.84 for 3-year average; 1958-2001). A decreasing trend from the mid-1980s onwards is evident in both SSS and coral δ18O, corresponding to trends seen in other Caribbean studies. Further, both geochemical proxies show a significant negative correlation to cloud cover averaged over a regional box (r=-0.66 for Sr/Ca; r=-0.48 for δ18O; 1941-2003). A significant drop in cloud cover is seen around the year 1947, which is displayed in both proxies as a distinct positive peak and coincides with a drop in instrumental SST. Interestingly, a marked decrease in annual coral growth rate is observed in the uppermost years of the core (1999 to 2004), as well as a reduced seasonal amplitude in δ18O variability and a trend to more negative δ18O-values at the same time. This timing coincides with an extreme event that occurred in December 1999, when Venezuela saw its highest monthly rainfall in 100 years, triggering massive landslides, debris flows and flooding along the northern coast of Venezuela. This event, which killed more than 30,000 people and caused massive damage to communities and infrastructure, has also severely influenced local coral reefs, including the study site. Coastal Venezuelan coral reefs in the affected area have seen a steep decline after this event, which is documented in our core by a distinct drop in annual growth rates after December 1999. In summary, this record documents the local and regional history of sea surface and atmospheric conditions with high temporal resolution, as well as local climatic extreme events.

Projected SST trends across the Caribbean Sea based on PRECIS downscaling of ECHAM4, under the SRES A2 and B2 scenarios

NASA Astrophysics Data System (ADS)

Nurse, Leonard A.; Charlery, John L.

2016-01-01

The Caribbean Sea and adjacent land areas are highly sensitive to the projected impacts of global climate change. The countries bordering the Caribbean Sea depend heavily on coastal and marine assets as a major source of livelihood support. Rising sea surface temperatures (SSTs) are known to be associated with coral bleaching, ocean acidification, and other phenomena that threaten livelihoods in the region. The paucity of SST systematic observations in both the Caribbean Sea and adjoining Western Atlantic waters is a limiting factor in the projection of future climate change impacts on the region's marine resources. Remote sensing of SST by satellites began only within the last three decades and although the data collected so far might be insufficient to provide conclusive definitions of long-term SST variations in the Caribbean waters, these data along with the output from climate model simulations provide a useful basis for gaining further insights into plausible SST futures under IPCC SRES scenarios. In this paper, we examine the recent SST records from the NESDIS AVHRR satellite data and NOAA Optimum Interpolation (OI) sea surface temperature V2 and provide a comparative analysis of projected SST changes for the Caribbean Sea up to the end of the twenty-first century, under the SRES A2 and B2 scenarios' simulations of the sea surface skin temperatures (SSsT) using the Hadley Centre's regional model, PRECIS. The implications of these projected SST changes for bleaching of coral reefs, one of the region's most valuable marine resource, and for rainfall are also discussed.

Monitoring and trend mapping of sea surface temperature (SST) from MODIS data: a case study of Mumbai coast.

PubMed

Azmi, Samee; Agarwadkar, Yogesh; Bhattacharya, Mohor; Apte, Mugdha; Inamdar, Arun B

2015-04-01

Sea surface temperature (SST) is one of the most important parameters in monitoring ecosystem health in the marine and coastal environment. Coastal ecosystem is largely dependent on ambient temperature and temperature fronts for marine/coastal habitat and its sustainability. Hence, thermal pollution is seen as a severe threat for ecological health of coastal waters across the world. Mumbai is one of the largest metropolises of the world and faces severe domestic and industrial effluent disposal problem, of which thermal pollution is a major issue with policy-makers and environmental stakeholders. This study attempts to understand the long-term SST variation in the coastal waters off Mumbai, on the western coast of India, and to identify thermal pollution zones. Analysis of SST trends in the near-coastal waters for the pre- and post-monsoon seasons from the year 2004 to the year 2010 has been carried out using Moderate Resolution Imaging Spectro-radiometer (MODIS) Thermal Infra-red (TIR) bands. SST is calculated with the help of bands 31 and 32 using split window method. Several statistical operations were then applied to find the seasonal averages in SST and the standard deviation of SST in the study area. Maximum variation in SST was found within a perpendicular distance of 5 km from the shoreline during the study period. Also, a warm water mass was found to form consistently off coast during the winter months. Several anthropogenic sources of thermal pollution could be identified which were found to impact various locations along the coast.

Effects of southeastern Pacific sea surface temperature on the double-ITCZ bias in NCAR CESM1

NASA Astrophysics Data System (ADS)

Song, F.; Zhang, G. J.

2016-12-01

The double-intertropical convergence zone (ITCZ) is a long-standing bias in the coupled general circulation models (CGCMs). The warm biases in southeastern Pacific (SEP) sea surface temperature (SST) are also evident in many CGCMs. In this study, the role of SEP SST in the double-ITCZ is investigated by prescribing the observed SEP SST in the Community Earth System Model version 1 (CESM1). Both the double-ITCZ and dry equator problems are significantly improved with SEP SST prescribed. The colder SST over the SEP increases the southeasterly winds extending outside the prescribed SST region, cooling the ocean there via increased evaporation. The enhanced descending motion over the SEP strengthens the Walker circulation, so the low-level wind convergence in the tropical western Pacific is increased. The reduced wind speed leads to warmer SST and stronger convection there. The stronger convection in turn leads to more cloud and reduces the incoming solar radiation, cooling the SST. These competing effects between radiative heat flux and latent heat flux make the atmospheric heat flux secondary to the ocean dynamics in the western Pacific warming. The increased easterly winds over the equatorial Pacific enhance upwelling and shoal the thermocline over the eastern Pacific. This Bjerknes feedback plays an important role in the improvement of dry equator. The changes of surface wind and wind curl also lead to weaker South Equatorial Countercurrent and stronger South Equatorial Current, preventing the warm water from expanding eastward, thereby improving both the double-ITCZ and dry equator.

Pasireotide and octreotide antiproliferative effects and sst2 trafficking in human pancreatic neuroendocrine tumor cultures.

PubMed

Mohamed, Amira; Blanchard, Marie-Pierre; Albertelli, Manuela; Barbieri, Federica; Brue, Thierry; Niccoli, Patricia; Delpero, Jean-Robert; Monges, Genevieve; Garcia, Stephane; Ferone, Diego; Florio, Tullio; Enjalbert, Alain; Moutardier, Vincent; Schonbrunn, Agnes; Gerard, Corinne; Barlier, Anne; Saveanu, Alexandru

2014-10-01

Gastroenteropancreatic neuroendocrine tumors (GEP-NETs) raise difficult therapeutic problems despite the emergence of targeted therapies. Somatostatin analogs (SSA) remain pivotal therapeutic drugs. However, the tachyphylaxis and the limited antitumoral effects observed with the classical somatostatin 2 (sst2) agonists (octreotide and lanreotide) led to the development of new SSA, such as the pan sst receptor agonist pasireotide. Our aim was to compare the effects of pasireotide and octreotide on cell survival, chromogranin A (CgA) secretion, and sst2 phosphorylation/trafficking in pancreatic NET (pNET) primary cells from 15 tumors. We established and characterized the primary cultures of human pancreatic tumors (pNETs) as powerful preclinical models for understanding the biological effects of SSA. At clinically relevant concentrations (1-10 nM), pasireotide was at least as efficient as octreotide in inhibiting CgA secretion and cell viability through caspase-dependent apoptosis during short treatments, irrespective of the expression levels of the different sst receptors or the WHO grade of the parental tumor. Interestingly, unlike octreotide, which induces a rapid and persistent partial internalization of sst2 associated with its phosphorylation on Ser341/343, pasireotide did not phosphorylate sst2 and induced a rapid and transient internalization of the receptor followed by a persistent recycling at the cell surface. These results provide the first evidence, to our knowledge, of striking differences in the dynamics of sst2 trafficking in pNET cells treated with the two SSAs, but with similar efficiency in the control of CgA secretion and cell viability. © 2014 Society for Endocrinology.

Serum soluble ST2 as diagnostic marker of systemic inflammatory reactive syndrome of bacterial etiology in children.

PubMed

Calò Carducci, Francesca Ippolita; Aufiero, Lelia Rotondi; Folgori, Laura; Vittucci, Anna Chiara; Amodio, Donato; De Luca, Maia; Li Pira, Giuseppina; Bergamini, Alberto; Pontrelli, Giuseppe; Finocchi, Andrea; D'Argenio, Patrizia

2014-02-01

Accurate and timely diagnosis of community-acquired bacterial versus viral infections in children with systemic inflammatory response syndrome (SIRS) remains challenging both for clinician and laboratory. In the quest of new biochemical markers to distinguish bacterial from viral infection, we have explored the possible role of the soluble secreted form of ST2 (sST2). This explorative prospective cohort study included children with SIRS who were suspected of having community-acquired infections. Plasma samples for sST2 measurement were obtained from 64 hospitalized children, 41 of whom had SIRS of bacterial etiology and 23 SIRS of viral etiology, and from 20 healthy, age- and sex-matched control children. sST2 measurement was carried out by enzyme-linked immunosorbent assay in parallel with standard measurements of procalcitonin (PCT) and C reactive protein (CRP). Our findings demonstrate that children with SIRS associated with bacterial infection present significantly increased levels of sST2, when compared with patients with SIRS of viral etiology and healthy children. More important, receiver operating characteristic curve analysis indicated that sST2 has a significant diagnostic performance with respect to early identification of SIRS of bacterial etiology, which was similar to that of PCT and greater than that of CRP. Finally, the combination of sST2 plus PCT and/or CRP, and PCT plus CRP increased their sensitivity and negative predictive value compared with sST2, PCT and CRP alone. In conclusion, sST2 level may prove useful in predicting bacterial etiology in children with SIRS.

Stratospheric role in interdecadal changes of El Niño impacts over Europe

NASA Astrophysics Data System (ADS)

Ayarzagüena, B.; López-Parages, J.; Iza, M.; Calvo, N.; Rodríguez-Fonseca, B.

2018-04-01

The European precipitation response to El Niño (EN) has been found to present interdecadal changes, with alternated periods of important or negligible EN impact in late winter. These periods are associated with opposite phases of multi-decadal sea surface temperature (SST) variability, which modifies the tropospheric background and EN teleconnections. In addition, other studies have shown how SST anomalies in the equatorial Pacific, and in particular, the location of the largest anomalous SST, modulate the stratospheric response to EN. Nevertheless, the role of the stratosphere on the stationarity of EN response has not been investigated in detail so far. Using reanalysis data, we present a comprehensive study of EN teleconnections to Europe including the role of the ocean background and the stratosphere in the stationarity of the signal. The results reveal multidecadal variability in the location of EN-related SST anomalies that determines different teleconnections. In periods with relevant precipitation signal over Europe, the EN SST pattern resembles Eastern Pacific EN and the stratospheric pathway plays a key role in transmitting the signal to Europe in February, together with two tropospheric wavetrains that transmit the signal in February and April. Conversely, the stratospheric pathway is not detected in periods with a weak EN impact on European precipitation, corresponding to EN-related SST anomalies primarily located over the central Pacific. SST mean state and its associated atmospheric background control the location of EN-related SST anomalies in different periods and modulate the establishment of the aforementioned stratospheric pathway of EN teleconnection to Europe too.

Different propagation speeds of recalled sequences in plastic spiking neural networks

NASA Astrophysics Data System (ADS)

Huang, Xuhui; Zheng, Zhigang; Hu, Gang; Wu, Si; Rasch, Malte J.

2015-03-01

Neural networks can generate spatiotemporal patterns of spike activity. Sequential activity learning and retrieval have been observed in many brain areas, and e.g. is crucial for coding of episodic memory in the hippocampus or generating temporal patterns during song production in birds. In a recent study, a sequential activity pattern was directly entrained onto the neural activity of the primary visual cortex (V1) of rats and subsequently successfully recalled by a local and transient trigger. It was observed that the speed of activity propagation in coordinates of the retinotopically organized neural tissue was constant during retrieval regardless how the speed of light stimulation sweeping across the visual field during training was varied. It is well known that spike-timing dependent plasticity (STDP) is a potential mechanism for embedding temporal sequences into neural network activity. How training and retrieval speeds relate to each other and how network and learning parameters influence retrieval speeds, however, is not well described. We here theoretically analyze sequential activity learning and retrieval in a recurrent neural network with realistic synaptic short-term dynamics and STDP. Testing multiple STDP rules, we confirm that sequence learning can be achieved by STDP. However, we found that a multiplicative nearest-neighbor (NN) weight update rule generated weight distributions and recall activities that best matched the experiments in V1. Using network simulations and mean-field analysis, we further investigated the learning mechanisms and the influence of network parameters on recall speeds. Our analysis suggests that a multiplicative STDP rule with dominant NN spike interaction might be implemented in V1 since recall speed was almost constant in an NMDA-dominant regime. Interestingly, in an AMPA-dominant regime, neural circuits might exhibit recall speeds that instead follow the change in stimulus speeds. This prediction could be tested in experiments.

A PCR-Based Method for RNA Probes and Applications in Neuroscience.

PubMed

Hua, Ruifang; Yu, Shanshan; Liu, Mugen; Li, Haohong

2018-01-01

In situ hybridization (ISH) is a powerful technique that is used to detect the localization of specific nucleic acid sequences for understanding the organization, regulation, and function of genes. However, in most cases, RNA probes are obtained by in vitro transcription from plasmids containing specific promoter elements and mRNA-specific cDNA. Probes originating from plasmid vectors are time-consuming and not suitable for the rapid gene mapping. Here, we introduce a simplified method to prepare digoxigenin (DIG)-labeled non-radioactive RNA probes based on polymerase chain reaction (PCR) amplification and applications in free-floating mouse brain sections. Employing a transgenic reporter line, we investigate the expression of the somatostatin (SST) mRNA in the adult mouse brain. The method can be applied to identify the colocalization of SST mRNA and proteins including corticotrophin-releasing hormone (CRH) and protein kinase C delta type (PKC-δ) using double immunofluorescence, which is useful for understanding the organization of complex brain nuclei. Moreover, the method can also be incorporated with retrograde tracing to visualize the functional connection in the neural circuitry. Briefly, the PCR-based method for non-radioactive RNA probes is a useful tool that can be substantially utilized in neuroscience studies.

Early Student Support for SST Control by Subsurface Mixing during Indian Ocean Monsoons

DTIC Science & Technology

2015-09-30

Lee and Rainville), and NRL (Wijesekera). OBJECTIVES The objectives of this project are to: 1. use satellite-measured SSS , SST, and SSH to...forcing, and 5. synthesize the above information and products to examine links and feedbacks between the SST and SSS of the SLD and local precipitation

Estimation of sea surface temperature from remote sensing in the 11to 13-micron window region

NASA Technical Reports Server (NTRS)

Prabhakara, C.; Kunde, V. G.; Dalu, G.

1974-01-01

The Nimbus 3 and 4 Iris spectral data in the 11- to 13-micron water vapor window region are analyzed to determine the sea surface temperature (SST). The high spectral resolution data of Iris are averaged over approximately 1-micron-wide intervals to simulate channels of a radiometer to measure the SST. In the present exploratory study, three such channels in the 775- to 960-per cm (12.9-10.5 micron) region are utilized to measure the SST over cloud-free oceans. However, two of these channels are sufficient in routine SST determination. The differential absorption properties of water vapor in the two channels make it possible to determine the water vapor absorption correction without detailed knowledge of the vertical profiles of temperature and water vapor. The feasibility of determining the SST is demonstrated globally with Nimbus 3 data, where cloud-free areas can be selected with the help of albedo data from the medium-resolution infrared radiometer experiment on board the same satellite. The SST derived from this technique agrees with the measurements made by ships to about 1 C.-

On the Regulation of the Pacific Warm Pool Temperature

NASA Technical Reports Server (NTRS)

Chou, Ming-Dah; Chou, Sue-Hsien; Chan, Pui-King; Lau, William K. M. (Technical Monitor)

2002-01-01

In the tropical western Pacific, regions of the highest sea surface temperature (SST) and the largest cloud cover are found to have the largest surface heating, primarily due to the weak evaporative cooling associated with weak winds. This situation is in variance with the suggestions that the temperature in the Pacific warm pool is regulated either by the reduced solar heating due to an enhanced cloudiness or by the enhanced evaporative cooling due to an elevated SST. It is clear that an enhanced surface heating in an enhanced convection region is not sustainable and must be interrupted by variations in large-scale atmospheric circulation. As the deep convective regions shift away from regions of high SST due primarily to seasonal variation and secondarily to interannual variation of the large-scale atmospheric and oceanic circulation, both trade wind and evaporative cooling in the high SST region increase, leading to a reduction in SST. We conclude that the evaporative cooling associated with the seasonal and interannual variations of trade winds in the primary factor that prevent the warm pool SST from increasing to a value much higher than what is observed.

Comparison of two Centennial-scale Sea Surface Temperature Datasets in the Regional Climate Change Studies of the China Seas

NASA Astrophysics Data System (ADS)

Qingyuan, Wang; Yanan, Wang; Yiwei, Liu

2017-08-01

Two widely used sea surface temperature (SST) datasets are compared in this article. We examine characteristics in the climate variability of SST in the China Seas.Two series yielded almost the same warming trend for 1890-2013 (0.7-0.8°C/100 years). However, HadISST1 series shows much stronger warming trends during 1961-2013 and 1981-2013 than that of COBE SST2 series. The disagreement between data sets was marked after 1981. For the hiatus period 1998-2013, the cooling trends of HadISST1 series is much lower than that of COBE SST2. These differences between the two datasets are possibly caused by the different observations which are incorporated to fill with data-sparse regions since 1982. Those findings illustrate that there are some uncertainties in the estimate of SST warming patterns in certain regions. The results also indicate that the temporal and spatial deficiency of observed data is still the biggest handicap for analyzing multi-scale SST characteristics in regional area.

Some analyses of the chemistry and diffusion of SST exhaust materials during phase 3 of the wake period. [in lower stratosphere

NASA Technical Reports Server (NTRS)

Hilst, G. R.; Donaldson, C. D.; Contiliano, R. M.

1973-01-01

In the generally stably stratified lower stratosphere, SST exhaust plumes could spend a significant length of time in a relatively undispersed state. This effort has utilized invariant modeling techniques to simulate the separate and combined effects of atmospheric turbulence, turbulent diffusion, and chemical reactions of SST exhaust materials in the lower stratosphere. The primary results to date are: (1) The combination of relatively slow diffusive mixing and rapid chemical reactions during the Phase III wake period minimizes the effect of SST exhausts on O3 depletion by the so-called NOx catalytic cycle. While the SST-produced NO is substantially above background concentrations, it appears diffusive mixing of NO and O3 is simply too slow to produce the O3 depletions originally proposed. (2) The time required to dilute the SST exhaust plume may be a significant fraction of the total time these materials are resident in the lower stratosphere. If this is the case, then prior estimates of the environmental impact of these materials must be revised significantly downward.

The single mirror small size telescope (SST-1M) of the Cherenkov Telescope Array

NASA Astrophysics Data System (ADS)

Aguilar, J. A.; Bilnik, W.; Borkowski, J.; Cadoux, F.; Christov, A.; della Volpe, D.; Favre, Y.; Heller, M.; Kasperek, J.; Lyard, E.; Marszałek, A.; Moderski, R.; Montaruli, T.; Porcelli, A.; Prandini, E.; Rajda, P.; Rameez, M.; Schioppa, E., Jr.; Troyano Pujadas, I.; Zietara, K.; Blocki, J.; Bogacz, L.; Bulik, T.; Frankowski, A.; Grudzinska, M.; Idźkowski, B.; Jamrozy, M.; Janiak, M.; Lalik, K.; Mach, E.; Mandat, D.; Michałowski, J.; Neronov, A.; Niemiec, J.; Ostrowski, M.; Paśko, P.; Pech, M.; Schovanek, P.; Seweryn, K.; Skowron, K.; Sliusar, V.; Stawarz, L.; Stodulska, M.; Stodulski, M.; Toscano, S.; Walter, R.; WiÈ©cek, M.; Zagdański, A.

2016-07-01

The Small Size Telescope with Single Mirror (SST-1M) is one of the proposed types of Small Size Telescopes (SST) for the Cherenkov Telescope Array (CTA). The CTA south array will be composed of about 100 telescopes, out of which about 70 are of SST class, which are optimized for the detection of gamma rays in the energy range from 5 TeV to 300 TeV. The SST-1M implements a Davies-Cotton optics with a 4 m dish diameter with a field of view of 9°. The Cherenkov light produced in atmospheric showers is focused onto a 88 cm wide hexagonal photo-detection plane, composed of 1296 custom designed large area hexagonal silicon photomultipliers (SiPM) and a fully digital readout and trigger system. The SST-1M camera has been designed to provide high performance in a robust as well as compact and lightweight design. In this contribution, we review the different steps that led to the realization of the telescope prototype and its innovative camera.

Operational use of high-resolution sst in a coupled sea ice-ocean model

NASA Astrophysics Data System (ADS)

Albretsen, A.

2003-04-01

A high-latitude, near real time, sea surface temperature (SST) product with 10 km resolution is developed at the Norwegian Meteorological Institute (met.no) through the EUMETSAT project OSI-SAF (Ocean and Sea Ice Satellite Application Facility). The product covers the Atlantic Ocean from 50N to 90N and is produced twice daily. A digitized SST and sea ice map is produced manually once a week at the Ice Mapping Service at met.no using all available information from the previous week. This map is the basis for a daily SST analysis, in which the most recent OSI-SAF SST products are successively overlaid. The resulting SST analysis field is then used in a simple data assimilation scheme in a coupled ice-ocean model to perform daily 10 days forecasts of ocean and sea ice variables. Also, the associated OSI-SAF sea ice concentration product, built from different polar orbiting satellites, is assimilated into the sea ice model. Preliminary estimates of impact on forecast skill and error statistics will be presented.

Contribution of tropical cyclones to abnormal sea surface temperature warming in the Yellow Sea in December 2004

NASA Astrophysics Data System (ADS)

Kim, Taekyun; Choo, Sung-Ho; Moon, Jae-Hong; Chang, Pil-Hun

2017-12-01

Unusual sea surface temperature (SST) warming occurred over the Yellow Sea (YS) in December 2004. To identify the causes of the abnormal SST warming, we conducted an analysis on atmospheric circulation anomalies induced by tropical cyclones (TCs) and their impacts on upper ocean characteristics using multiple datasets. With the analysis of various datasets, we explored a new aspect of the relationship between TC activity and SST. The results show that there is a significant link between TC activity over the Northwest Pacific (NWP) and SST in the YS. The integrated effect of consecutive TCs activity induces a large-scale atmospheric cyclonic circulation anomaly over the NWP and consequently anomalous easterly winds over the YS and East China Sea. The mechanism of the unusually warm SST in the YS can be explained by considering TCs acting as an important source of Ekman heat transport that results in substantial intrusion of relatively warm surface water into the YS interior. Furthermore, TC-related circulation anomalies contribute to the retention of the resulting warm SST anomalies in the entire YS.

Mesoscale Variation of Mechanisms Contributing to Stability in Rocky Shore Communities

PubMed Central

Valdivia, Nelson; González, Andrés E.; Manzur, Tatiana; Broitman, Bernardo R.

2013-01-01

Environmental fluctuations can generate asynchronous species’ fluctuations and community stability, due to compensatory dynamics of species with different environmental tolerances. We tested this hypothesis in intertidal hard-bottom communities of north-central Chile, where a persistent upwelling centre maintains a mosaic in sea surface temperatures (SST) over 10s of kilometres along the shore. Coastal upwelling implies colder and temporally more stable SST relative to downstream sites. Uni- and multivariate analyses of multiyear timeseries of SST and species abundances showed more asynchronous fluctuations and higher stability in sites characterised by warmer and more variable SST. Nevertheless, these effects were weakened after including data obtained in sites affected by less persistent upwelling centres. Further, dominant species were more stable in sites exposed to high SST variability. The strength of other processes that can influence community stability, chiefly statistical averaging and overyielding, did not vary significantly between SST regimes. Our results provide observational evidence supporting the idea that exogenously driven compensatory dynamics and the stabilising effects of dominant species can determine the stability of ecosystems facing environmental fluctuations. PMID:23326592

Warming off southwestern Japan linked to distributional shifts of subtidal canopy-forming seaweeds.

PubMed

Tanaka, Kouki; Taino, Seiya; Haraguchi, Hiroko; Prendergast, Gabrielle; Hiraoka, Masanori

2012-11-01

To assess distributional shifts of species in response to recent warming, historical distribution records are the most requisite information. The surface seawater temperature (SST) of Kochi Prefecture, southwestern Japan on the western North Pacific, has significantly risen, being warmed by the Kuroshio Current. Past distributional records of subtidal canopy-forming seaweeds (Laminariales and Fucales) exist at about 10-year intervals from the 1970s, along with detailed SST datasets at several sites along Kochi's >700 km coastline. In order to provide a clear picture of distributional shifts of coastal marine organisms in response to warming SST, we observed the present distribution of seaweeds and analyzed the SST datasets to estimate spatiotemporal SST trends in this coastal region. We present a large increase of 0.3°C/decade in the annual mean SST of this area over the past 40 years. Furthermore, a comparison of the previous and present distributions clearly showed the contraction of temperate species' distributional ranges and expansion of tropical species' distributional ranges in the seaweeds. Although the main temperate kelp Ecklonia (Laminariales) had expanded their distribution during periods of cooler SST, they subsequently declined as the SST warmed. Notably, the warmest SST of the 1997-98 El Niño Southern Oscillation event was the most likely cause of a widespread destruction of the kelp populations; no recovery was found even in the present survey at the formerly habitable sites where warm SSTs have been maintained. Temperate Sargassum spp. (Fucales) that dominated widely in the 1970s also declined in accordance with recent warming SSTs. In contrast, the tropical species, S. ilicifolium, has gradually expanded its distribution to become the most conspicuously dominant among the present observations. Thermal gradients, mainly driven by the warming Kuroshio Current, are presented as an explanation for the successive changes in both temperate and tropical species' distributions.

A reconstruction of sea surface temperature variability in the southeastern Gulf of Mexico from 1734 to 2008 C.E. using cross-dated Sr/Ca records from the coral Siderastrea siderea

NASA Astrophysics Data System (ADS)

DeLong, Kristine L.; Flannery, Jennifer A.; Poore, Richard Z.; Quinn, Terrence M.; Maupin, Christopher R.; Lin, Ke; Shen, Chuan-Chou

2014-05-01

This study uses skeletal variations in coral Sr/Ca from three Siderastrea siderea coral colonies within the Dry Tortugas National Park in the southeastern Gulf of Mexico (24°42'N, 82°48'W) to reconstruct monthly sea surface temperature (SST) variations from 1734 to 2008 Common Era (C.E.). Calibration and verification of the replicated coral Sr/Ca-SST reconstruction with local, regional, and historical temperature records reveals that this proxy-temperature relationship is stable back to 1879 C.E. The coral SST reconstruction contains robust interannual ( 2.0°C) and multidecadal variability ( 1.5°C) for the past 274 years, the latter of which does not covary with the Atlantic Multidecadal Oscillation. Winter SST extremes are more variable than summer SST extremes (±2.2°C versus ±1.6°C, 2σ) suggesting that Loop Current transport in the winter dominates variability on interannual and longer time scales. Summer SST maxima are increasing (+1.0°C for 274 years, σMC = ±0.5°C, 2σ), whereas winter SST minima contain no significant trend. Colder decades ( 1.5°C) during the Little Ice Age (LIA) do not coincide with decades of sunspot minima. The coral SST reconstruction contains similar variability to temperature reconstructions from the northern Gulf of Mexico (planktic foraminifer Mg/Ca) and the Caribbean Sea (coral Sr/Ca) suggesting areal reductions in the Western Hemisphere Warm Pool during the LIA. Mean summer coral SST extremes post-1985 C.E. (29.9°C) exceeds the long-term summer average (29.2°C for 1734-2008 C.E.), yet the warming trend after 1985 C.E. (0.04°C for 24 years, σMC = ±0.5, 2σ) is not significant, whereas Caribbean coral Sr/Ca studies contain a warming trend for this interval.

Immunohistochemical expression and colocalization of somatostatin, carboxypeptidase-E and prohormone convertases 1 and 2 in rat brain.

PubMed

Billova, S; Galanopoulou, A S; Seidah, N G; Qiu, X; Kumar, U

2007-06-29

The processing of many peptides for their maturation in target tissue depends upon the presence of sorting receptor. Several previous studies have predicted that carboxypeptidase-E (CPE), prohormone convertase 1 (PC1) and prohormone convertase 2 (PC2) may function as sorting elements for somatostatin (SST) for its maturation and processing to appropriate targets. However, nothing is currently known about whether brain, neuronal culture or even endocrine cells express SST, CPE, PC1 and PC2 and exhibit colocalization. Accordingly, in the present study using peroxidase immunohistochemistry, double-labeled indirect immunofluorescence immunohistochemistry and Western blot analysis, we mapped the distributional pattern of SST, CPE, PC1 and PC2 in different rat brain regions. Additionally, we also determined the colocalization of SST with CPE, PC1 and PC2 as well as colocalization of CPE with PC1 and PC2. The localization of SST, CPE, PC1 and PC2 reveals a distinct and region specific distribution pattern in the rat brain. Using an indirect double-label immunofluorescence method we observed selective neuron specific colocalization in a region specific manner in cortex, striatum and hippocampus. These studies provide the first evidence for colocalization between SST, CPE, PC1 and PC2 as well as CPE with PC1 and PC2. SST in cerebral cortex colocalized in pyramidal and non-pyramidal neurons with CPE, PC1 and PC2. Most importantly, in striatum and hippocampus colocalization was mostly observed selectively and preferentially in interneurons. CPE is also colocalized with PC1 and PC2 in a region specific manner. The data presented here provide a new insight into the distribution and colocalization of SST, CPE, PC1 and PC2 in rat brain. Taken together, our data anticipate the possibility that CPE, PC1 and PC2 might be potential target for the maturation of SST.

The super greenhouse effect in a warming world: the role of dynamics and thermodynamics

NASA Astrophysics Data System (ADS)

Kashinath, Karthik; O'Brien, Travis; Collins, William

2016-04-01

Over warm tropical oceans the increase in greenhouse trapping with increasing SST can be faster than that of the surface emission, resulting in a decrease in clear sky outgoing longwave radiation at the top of the atmosphere (OLR) when SST increases, also known as the super greenhouse effect (SGE). If the SGE is directly linked to SST changes, there are profound implications for positive climate feedbacks in the tropics. We show that CMIP5 models perform well in simulating the observed clear-sky greenhouse effect in the present day. Using global warming experiments we show that the onset and shutdown SST of the SGE, as well as the magnitude of the SGE, increase as the convective threshold SST increases. To account for an increasing convective threshold SST we use an invariant coordinate for convection proposed in a recent study [Williams et al., GRL (2009)]. However, even after accounting for the increase in tropical SST (by normalizing the SGE by surface emission) and accounting for the increase in the threshold temperature for convection (by using the invariant coordinate) we find that the models predict a distinct increase in the clear-sky greenhouse effect in a warmed world. This suggests that thermodynamics (i.e. SST) plays a crucial role in regulating the increasing clear sky greenhouse effect in a warming world. We use theoretical arguments to estimate this increase in SGE and derive its dependence on SST. Finally, as shown in previous studies, we confirm that the increase in the clear-sky greenhouse effect is primarily due to upper tropospheric moistening. Although the absolute increase in upper tropospheric water vapor is small compared to that of the lower troposphere, since the absorptivity scales with fractional changes in water vapor, the contribution of the upper troposphere is more significant, as shown by Chung et al., PNAS (2014).

ST2 and IL-33 in Pregnancy and Pre-Eclampsia

PubMed Central

Snider, James V.; Tannetta, Dionne S.; Child, Tim; Redman, Christopher W. G.; Sargent, Ian L.

2011-01-01

Normal pregnancy is associated with a mild systemic inflammatory response and an immune bias towards type 2 cytokine production, whereas pre-eclampsia is characterized by a more intense inflammatory response, associated with endothelial dysfunction and a type 1 cytokine dominance. Interleukin (IL)-33 is a newly described member of the IL-1 family, which binds its receptor ST2L to induce type 2 cytokines. A soluble variant of ST2 (sST2) acts as a decoy receptor to regulate the activity of IL-33. In this study circulating IL-33 and sST2 were measured in each trimester of normal pregnancy and in women with pre-eclampsia. While IL-33 did not change throughout normal pregnancy, or between non-pregnant, normal pregnant or pre-eclamptic women, sST2 was significantly altered. sST2 was increased in the third trimester of normal pregnancy (p<0.001) and was further increased in pre-eclampsia (p<0.001). This increase was seen prior to the onset of disease (p<0.01). Pre-eclampsia is a disease caused by placental derived factors, and we show that IL-33 and ST2 can be detected in lysates from both normal and pre-eclampsia placentas. ST2, but not IL-33, was identified on the syncytiotrophoblast layer, whereas IL-33 was expressed on perivascular tissue. In an in vitro placental perfusion model, sST2 was secreted by the placenta into the ‘maternal’ eluate, and placental explants treated with pro-inflammatory cytokines or subjected to hypoxia/reperfusion injury release more sST2, suggesting the origin of at least some of the increased amounts of circulating sST2 in pre-eclamptic women is the placenta. These results suggest that sST2 may play a significant role in pregnancies complicated by pre-eclampsia and increased sST2 could contribute to the type 1 bias seen in this disorder. PMID:21949719

A global monthly sea surface temperature climatology

DOE Office of Scientific and Technical Information (OSTI.GOV)

Shea, D.J.; Trenberth, K.E.; Reynolds, R.W.

1992-09-01

The paper presents a new global 2 deg x 2 deg monthly sea surface temperature (SST) climatology, referred here to as the Shea-Trenberth-Reynolds (STR) climatology, which was derived by modifying a 1950-1979-based SST climatology from the Climate Analysis Center (CAC), by using data from the Comprehensive Ocean-Atmosphere Data Set to improve the SST estimates in the regions of the Kuroshio and the Gulf Stream. A comparison of the STR climatology with the Alexander and Mobley SST climatology showed that the STR climatology is warmer in the Northern Hemisphere, and colder poleward of 45 deg S. 22 refs.

Differential effect of blood collection tubes on total free fatty acids (FFA) and total triiodothyronine (TT3) concentration: a model for studying interference from tube constituents.

PubMed

Bowen, Raffick A R; Vu, Chi; Remaley, Alan T; Hortin, Glen L; Csako, Gyorgy

2007-03-01

Besides total triiodothyronine (TT3), total free fatty acids (FFA) concentrations were higher with serum separator tube (SST) than Vacuette tubes. The effects of surfactant, rubber stopper, and separator gel from various tubes were investigated on FFA, beta-hydroxybutyrate (beta-HB), and TT3 with 8 different tube types in blood specimens of apparently healthy volunteers. Compared to Vacuette tubes, serum FFA and TT3 concentrations were significantly higher in SST than glass tubes. Reformulated SST eliminated the increase in TT3 but not FFA. No significant difference was observed for beta-HB concentration among tube types. Surfactant and rubber stoppers from the different tube types significantly increased TT3 but not FFA and beta-HB concentrations. Agitation of whole blood but not serum or plasma specimens with separator gel from SST, reformulated SST and plasma preparation tube (PPT) tubes compared to Vacuette tubes gave higher FFA but not beta-HB levels. Unidentified component(s) from the separator gel in SST, reformulated SST and PPT tubes cause falsely high FFA concentration. In contrast to TT3, falsely high FFA results require exposure of whole blood and not serum to tube constituent(s). The approach employed here may serve as a model for assessing interference(s) from tube constituent(s).

Genome-Scale Analysis Reveals Sst2 as the Principal Regulator of Mating Pheromone Signaling in the Yeast Saccharomyces cerevisiae†

PubMed Central

Chasse, Scott A.; Flanary, Paul; Parnell, Stephen C.; Hao, Nan; Cha, Jiyoung Y.; Siderovski, David P.; Dohlman, Henrik G.

2006-01-01

A common property of G protein-coupled receptors is that they become less responsive with prolonged stimulation. Regulators of G protein signaling (RGS proteins) are well known to accelerate G protein GTPase activity and do so by stabilizing the transition state conformation of the G protein α subunit. In the yeast Saccharomyces cerevisiae there are four RGS-homologous proteins (Sst2, Rgs2, Rax1, and Mdm1) and two Gα proteins (Gpa1 and Gpa2). We show that Sst2 is the only RGS protein that binds selectively to the transition state conformation of Gpa1. The other RGS proteins also bind Gpa1 and modulate pheromone signaling, but to a lesser extent and in a manner clearly distinct from Sst2. To identify other candidate pathway regulators, we compared pheromone responses in 4,349 gene deletion mutants representing nearly all nonessential genes in yeast. A number of mutants produced an increase (sst2, bar1, asc1, and ygl024w) or decrease (cla4) in pheromone sensitivity or resulted in pheromone-independent signaling (sst2, pbs2, gas1, and ygl024w). These findings suggest that Sst2 is the principal regulator of Gpa1-mediated signaling in vivo but that other proteins also contribute in distinct ways to pathway regulation. PMID:16467474

The Influence of Ocean on Typhoon Nuri (2008)

NASA Astrophysics Data System (ADS)

Sun, J.; Oey, L. Y.; Xu, F.; Lin, Y.; Huang, S. M.; Chang, R.

2014-12-01

The influence of ocean on typhoon Nuri (2008) is investigated in this study using the WRF numerical model. Typhoon Nuri formed over the warm pool of the western North Pacific. The storm traversed west-northwestward and became a Category 3 typhoon over the Kuroshio east of the Luzon Strait and weakened as it moved across South China Sea. Three types of SST: NCEP RTG_SST (Real-time，global，sea surface temperature) GHRsst (Group for High Resolution Sea Surface Temperature) and SST from the ATOP North Pacific ocean model [Oey et al 2014, JPO] are used in WRF to test the effect of ocean on the intensity of typhoon Nuri. The typhoon intensity and track are also compared with simulations using different microphysics schemes but with fixed SST. The results show that thermodynamic control through ocean response is the dominant factor which determines Nuri's intensity. The simulated intensity agrees well with the observed intensity when ATOP SST is used, while using NCEP SST and GHRsst yield errors both in intensity and timing of maximum intensity. Over the Kuroshio, the thicker depth of 26 ℃ from ATOP provides stronger heating for the correct timing of intensification of Nuri. In South China Sea, the storm weakened because of cooled SST through ocean mixing by inertial resonance. A new way of explaining typhoon intensification though PV is proposed.

Assimilation for skin SST in the NASA GEOS atmospheric data assimilation system

PubMed Central

Akella, Santha; Todling, Ricardo; Suarez, Max

2018-01-01

The present article describes the sea surface temperature (SST) developments implemented in the Goddard Earth Observing System, Version 5 (GEOS-5) Atmospheric Data Assimilation System (ADAS). These are enhancements that contribute to the development of an atmosphere-ocean coupled data assimilation system using GEOS. In the current quasi-operational GEOS-ADAS, the SST is a boundary condition prescribed based on the OSTIA product, therefore SST and skin SST (Ts) are identical. This work modifies the GEOS-ADAS Ts by modeling and assimilating near sea surface sensitive satellite infrared (IR) observations. The atmosphere-ocean interface layer of the GEOS atmospheric general circulation model (AGCM) is updated to include near surface diurnal warming and cool-skin effects. The GEOS analysis system is also updated to directly assimilate SST-relevant Advanced Very High Resolution Radiometer (AVHRR) radiance observations. Data assimilation experiments designed to evaluate the Ts modification in GEOS-ADAS show improvements in the assimilation of radiance observations that extends beyond the thermal IR bands of AVHRR. In particular, many channels of hyperspectral sensors, such as those of the Atmospheric Infrared Sounder (AIRS), and Infrared Atmospheric Sounding Interferometer (IASI) are also better assimilated. We also obtained improved fit to withheld, in-situ buoy measurement of near-surface SST. Evaluation of forecast skill scores show marginal to neutral benefit from the modified Ts. PMID:29628531

Relative roles of differential SST warming, uniform SST warming and land surface warming in determining the Walker circulation changes under global warming

NASA Astrophysics Data System (ADS)

Zhang, Lei; Li, Tim

2017-02-01

Most of CMIP5 models projected a weakened Walker circulation in tropical Pacific, but what causes such change is still an open question. By conducting idealized numerical simulations separating the effects of the spatially uniform sea surface temperature (SST) warming, extra land surface warming and differential SST warming, we demonstrate that the weakening of the Walker circulation is attributed to the western North Pacific (WNP) monsoon and South America land effects. The effect of the uniform SST warming is through so-called "richest-get-richer" mechanism. In response to a uniform surface warming, the WNP monsoon is enhanced by competing moisture with other large-scale convective branches. The strengthened WNP monsoon further induces surface westerlies in the equatorial western-central Pacific, weakening the Walker circulation. The increase of the greenhouse gases leads to a larger land surface warming than ocean surface. As a result, a greater thermal contrast occurs between American Continent and equatorial Pacific. The so-induced zonal pressure gradient anomaly forces low-level westerly anomalies over the equatorial eastern Pacific and weakens the Walker circulation. The differential SST warming also plays a role in driving low-level westerly anomalies over tropical Pacific. But such an effect involves a positive air-sea feedback that amplifies the weakening of both east-west SST gradient and Pacific trade winds.

Tracking down the path of memory: eye scanpaths facilitate retrieval of visuospatial information.

PubMed

Bochynska, Agata; Laeng, Bruno

2015-09-01

Recent research points to a crucial role of eye fixations on the same spatial locations where an item appeared when learned, for the successful retrieval of stored information (e.g., Laeng et al. in Cognition 131:263-283, 2014. doi: 10.1016/j.cognition.2014.01.003 ). However, evidence about whether the specific temporal sequence (i.e., scanpath) of these eye fixations is also relevant for the accuracy of memory remains unclear. In the current study, eye fixations were recorded while looking at a checkerboard-like pattern. In a recognition session (48 h later), animations were shown where each square that formed the pattern was presented one by one, either according to the same, idiosyncratic, temporal sequence in which they were originally viewed by each participant or in a shuffled sequence although the squares were, in both conditions, always in their correct positions. Afterward, participants judged whether they had seen the same pattern before or not. Showing the elements serially according to the original scanpath's sequence yielded a significantly better recognition performance than the shuffled condition. In a forced fixation condition, where the gaze was maintained on the center of the screen, the advantage of memory accuracy for same versus shuffled scanpaths disappeared. Concluding, gaze scanpaths (i.e., the order of fixations and not simply their positions) are functional to visual memory and physical reenacting of the original, embodied, perception can facilitate retrieval.

Bacterial diversity of siliciclastic sediments in a Thalassia testudinum meadow and the implications for Lucinisca nassula chemosymbiosis

NASA Astrophysics Data System (ADS)

Green-García, Angela M.; Engel, Annette Summers

2012-10-01

Despite the ecological and economic importance of Thalassia testudinum (turtle grass) meadows along the Caribbean and Gulf of Mexico coasts, and recognition that microbial activities are critical to plant growth and health, the bacterial diversity of these habitats has been poorly studied. Based on comparative analyses of 16S rRNA gene sequences from sediments in a T. testudinum meadow, 25 major taxonomic groups (excluding candidate divisions) were retrieved, including Alpha- Delta-, and Gamma-proteobacteria, Chloroflexi, Bacteroidetes, Acidobacteria, Spirochaetes, and Firmicutes. The distribution of bacterial groups was linked to a strongly hypoxic and sulfidic redox gradient. The diversity is potentially novel because phylogenetic affinities of sediment sequences compared to contextually annotated environmental clones from different habitats or to cultured representatives indicated approximately 41% were more closely related to each other than to sequences retrieved from these other habitats. Of all the relationships, very few (2.4%) were to cultured organisms, but 27% were to environmental clones retrieved from shallow marine shelf and coastal sediments or from mangroves, estuarine, or wetland sediments. Rare sequences were closely related to endosymbiont groups of Lucinisca nassula (Lucinidea: Bivalvia) hosts collected from the same meadow, which may indicate that the sediment is a potential reservoir for free-living symbionts. This study provides insight into the ecological and evolutionary relationships of the Thalassia-lucinid-bacteria system in tropical to sub-tropical regions.

On the Balancing of the SMOS Ocean Salinity Retrieval Cost Function

NASA Astrophysics Data System (ADS)

Sabia, R.; Camps, A.; Portabella, M.; Talone, M.; Ballabrera, J.; Gourrion, J.; Gabarró, C.; Aretxabaleta, A. L.; Font, J.

2009-04-01

The Soil Moisture and Ocean Salinity (SMOS) mission will be launched in mid 2009 to provide synoptic sea surface salinity (SSS) measurements with good temporal resolution [1]. To obtain a proper estimation of the SSS fields derived from the multi-angular brightness temperatures (TB) measured by the Microwave Interferometric Radiometer by Aperture Synthesis (MIRAS) sensor, a comprehensive inversion procedure has been defined [2]. Nevertheless, several salinity retrieval issues remain critical, namely: 1) Scene-dependent bias in the simulated TBs, 2) L-band forward geophysical model function definition, 3) Auxiliary data uncertainties, 4) Constraints in the cost function (inversion), especially in salinity term, and 5) Adequate spatio-temporal averaging. These issues will have to be properly addressed in order to meet the proposed accuracy requirement of the mission: a demanding 0.1 psu (practical salinity units) after averaging in a 30-day and 2°x2° spatio-temporal boxes. The salinity retrieval cost function minimizes the difference between the multi-angular measured SMOS TBs (yet simulated, so far) and the modeled TBs, weighted by the corresponding radiometric noise of the measurements. Furthermore, due to the fact that the minimization problem is both non-linear and ill-posed, background reference terms are needed to nudge the solution and ensuring convergence at the same time [3]. Constraining terms in SSS, sea surface temperature (SST) and wind speed are considered with their respective uncertainties. Moreover, whether SSS constraints have to be included or not as part of the retrieval procedure is still a matter of debate. On one hand, neglecting background reference information on SSS might prevent from retrieving salinity with the prescribed accuracy or at least within reasonable error. Conversely, including constraints in SSS, relying for instance on the climatology, may force the retrieved value to be too close to the reference prior values, thus producing spurious retrievals. In [4] it has been studied the impact of the different auxiliary salinity uncertainties in the accuracy of the retrieval. It has been shown that using physically-consistent salinity field uncertainties of the order of less than 0.5 psu (either as the standard deviation of the considered SSS field or as the standard deviation of the misfit between the original and the auxiliary SSS field) the SSS term turns out to be too constraining. A half-way solution could be envisaged by using empirical weights (regularization factors) which could smooth the overall influence of the SSS term still using the auxiliary fields with their corresponding physically-sounded uncertainties. This operation should be performed for the SST and wind speed term as well. The need for a comprehensive balancing of the different terms included in the cost function is also stressed by recent studies [5], which point out that the even the observational term (TBs) will need to be properly weighted by an effective ratio, taking into account the specific correlation patterns existing in the MIRAS measurements. Simulated data using the SMOS End-to-end Processor Simulator (SEPS), in its full-mode, including the measured antenna patterns for each antenna and all the instrument errors, are used in this study. The salinity retrieval process and the SSS maps (for each satellite overpass) are performed with UPC SMOS-Level 2 Processor Simulator (SMOS-L2PS). The relative weight for each of the terms included in the cost function (observational and background terms) is assessed in different cost function configurations. Regularization factors are introduced to ensure that SMOS information content is fully exploited. Preliminary results on the cost function balancing will be shown at the conference. References [1] Font, J., G. Lagerloef, D. Le Vine, A. Camps, and O.Z. Zanife, The Determination of Surface Salinity with the European SMOS Space Mission, IEEE Trans. Geosci. Remote Sens., 42 (10), 2196-2205, 2004. [2] Zine, S., J. Boutin, J. Font, N. Reul, P. Waldteufel, C. Gabarró, J. Tenerelli, F. Petitcolin, J.L. Vergely, M. Talone, and S. Delwart, Overview of the SMOS Sea Surface Salinity Prototype Processor, IEEE Trans. Geosc. Remote Sens, 46 (3), 621-645, 2008. [3] Gabarró, C., M. Portabella, M. Talone and J. Font, Analysis of the SMOS Ocean Salinity Inversion Algorithm, Proceedings of the International Geoscience and Remote Sensing Symposium (IGARSS), Barcelona, Spain, 971-974, 2007. [4] Sabia, R, Sea Surface Salinity Retrieval Error Budget within the ESA Soil Moisture and Ocean Salinity Mission, Ph.D. Dissertation, Barcelona, Spain, October 2008. [5] Talone, M., A. Camps, C. Gabarró, R. Sabia, J. Gourrion, M. Vall•llossera, B. Mourre, and J. Font, Contributions to the Improvement of the SMOS Level 2 Retrieval Algorithm: Optimization of the Cost Function, Proceedings of the International Geoscience and Remote Sensing Symposium (IGARSS), Boston, Massachusetts USA, 2008.

Development of a Support Application and a Textbook for Practicing Facial Expression Detection for Students with Visual Impairment

ERIC Educational Resources Information Center

Saito, Hirotaka; Ando, Akinobu; Itagaki, Shota; Kawada, Taku; Davis, Darold; Nagai, Nobuyuki

2017-01-01

Until now, when practicing facial expression recognition skills in nonverbal communication areas of SST, judgment of facial expression was not quantitative because the subjects of SST were judged by teachers. Therefore, we thought whether SST could be performed using facial expression detection devices that can quantitatively measure facial…

DOE Office of Scientific and Technical Information (OSTI.GOV)

Reidel, Stephen P.

This chapter summarizes the geology of the single-shell tank (SST) farms in the context of the region’s geologic history. This chapter is based on the information in the geology data package for the SST waste management areas and SST RFI Appendix E, which builds upon previous reports on the tank farm geology and Integrated Disposal Facility geology with information available after those reports were published.

Sustained Shared Thinking in an Early Childhood Setting: An Exploration of Practitioners' Perspectives

ERIC Educational Resources Information Center

Purdon, Anne

2016-01-01

Sustained shared thinking (SST) has been identified in the Teachers Standards (Early Years) (2013) as contributing to good progress and outcomes by children. In this paper, I define SST and discuss the outcomes of a study of practitioners' understandings of SST, its challenges and benefits. Writing frames, questionnaires and focus group interviews…

Using GenBank.

PubMed

Wheeler, David

2007-01-01

GenBank(R) is a comprehensive database of publicly available DNA sequences for more than 205,000 named organisms and for more than 60,000 within the embryophyta, obtained through submissions from individual laboratories and batch submissions from large-scale sequencing projects. Daily data exchange with the European Molecular Biology Laboratory (EMBL) in Europe and the DNA Data Bank of Japan ensures worldwide coverage. GenBank is accessible through the National Center for Biotechnology Information (NCBI) retrieval system, Entrez, which integrates data from the major DNA and protein sequence databases with taxonomy, genome, mapping, protein structure, and domain information and the biomedical journal literature through PubMed. BLAST provides sequence similarity searches of GenBank and other sequence databases. Complete bimonthly releases and daily updates of the GenBank database are available through FTP. GenBank usage scenarios ranging from local analyses of the data available through FTP to online analyses supported by the NCBI Web-based tools are discussed. To access GenBank and its related retrieval and analysis services, go to the NCBI Homepage at http://www.ncbi.nlm.nih.gov.

GenBank.

PubMed

Benson, Dennis A; Karsch-Mizrachi, Ilene; Lipman, David J; Ostell, James; Sayers, Eric W

2011-01-01

GenBank® is a comprehensive database that contains publicly available nucleotide sequences for more than 380,000 organisms named at the genus level or lower, obtained primarily through submissions from individual laboratories and batch submissions from large-scale sequencing projects, including whole genome shotgun (WGS) and environmental sampling projects. Most submissions are made using the web-based BankIt or standalone Sequin programs, and accession numbers are assigned by GenBank staff upon receipt. Daily data exchange with the European Nucleotide Archive (ENA) and the DNA Data Bank of Japan (DDBJ) ensures worldwide coverage. GenBank is accessible through the NCBI Entrez retrieval system that integrates data from the major DNA and protein sequence databases along with taxonomy, genome, mapping, protein structure and domain information, and the biomedical journal literature via PubMed. BLAST provides sequence similarity searches of GenBank and other sequence databases. Complete bimonthly releases and daily updates of the GenBank database are available by FTP. To access GenBank and its related retrieval and analysis services, begin at the NCBI Homepage: www.ncbi.nlm.nih.gov.

Postretrieval new learning does not reliably induce human memory updating via reconsolidation.

PubMed

Hardwicke, Tom E; Taqi, Mahdi; Shanks, David R

2016-05-10

Reconsolidation theory proposes that retrieval can destabilize an existing memory trace, opening a time-dependent window during which that trace is amenable to modification. Support for the theory is largely drawn from nonhuman animal studies that use invasive pharmacological or electroconvulsive interventions to disrupt a putative postretrieval restabilization ("reconsolidation") process. In human reconsolidation studies, however, it is often claimed that postretrieval new learning can be used as a means of "updating" or "rewriting" existing memory traces. This proposal warrants close scrutiny because the ability to modify information stored in the memory system has profound theoretical, clinical, and ethical implications. The present study aimed to replicate and extend a prominent 3-day motor-sequence learning study [Walker MP, Brakefield T, Hobson JA, Stickgold R (2003) Nature 425(6958):616-620] that is widely cited as a convincing demonstration of human reconsolidation. However, in four direct replication attempts (n = 64), we did not observe the critical impairment effect that has previously been taken to indicate disruption of an existing motor memory trace. In three additional conceptual replications (n = 48), we explored the broader validity of reconsolidation-updating theory by using a declarative recall task and sequences similar to phone numbers or computer passwords. Rather than inducing vulnerability to interference, memory retrieval appeared to aid the preservation of existing sequence knowledge relative to a no-retrieval control group. These findings suggest that memory retrieval followed by new learning does not reliably induce human memory updating via reconsolidation.

Investigating the sensitivity of hurricane intensity and trajectory to sea surface temperatures using the regional model WRF

NASA Astrophysics Data System (ADS)

Kilic, Cevahir; Raible, Christoph C.

2015-04-01

It is well known that the sea surface temperature (SST) has an influence on the development and intensification of tropical cyclones (TCs). This influence has become even more important during the past decades, as TCs show an intensification, which goes along with an increase in SSTs. The influence of sea surface temperature (SST) anomalies on the hurricane characteristics are investigated in a set of sensitivity experiments employing the Weather Research and Forecasting (WRF) model. The idealised experiments are performed for the case of Hurricane Katrina in 2005. (Kilic and Raible, 2013) The first set of sensitivity experiments with basin-wide changes of the SST magnitude shows that the intensity goes along with changes in the SST, i.e., an increase in SST leads to an intensification of Katrina. Additionally, the trajectory is shifted to the west (east), with increasing (decreasing) SSTs. The main reason is a strengthening of the background flow. To gain further insights in the dynamics, the potential vorticity (PV) and its tendency (PVT) are analysed. A positive PVT is located to the moving direction relative to the TC centre. Splitting the PVT in the horizontal advection, vertical advection, and diabatic heating terms, we find that mainly the horizontal advection term contributes to this PVT maximum, due to a steering by strong environmental flow. The impact of the diabatic heating is of minor importance and, hence, the TC motion is dominated by horizontal advection. The amount of the horizontal advection as well as the amount of the diabatic heating rise with increasing SST due to the enhanced Carnot cycle. The second set of experiments investigates the influence of Loop Current eddies idealised by localised SST anomalies. The intensity of Hurricane Katrina is enhanced with increasing SSTs close to the core of a TC. Negative nearby SST anomalies reduce the intensity. The trajectory only changes if positive SST anomalies are located west or north of the hurricane centre. In this case the hurricane is attracted by the SST anomaly which causes an additional moisture source and increased vertical winds. This study confirm the linear relation between SST and TC intensity. However, in case of localised SST anomalies, the relative location to the TC core determes the gradient of the linear relation. The gradient decreases with increasing distance between SST anomaly and initialisation point. The anomalies located west and north of the initialisation point have a stronger impact than the ones located south and east, as they lie in the moving direction of the TC. Further, in terms of magnitude and pattern, the horizontal advection term of PVT does not strongly differ from the reference simulation. However, the pattern of diabatic heating term differs: A maximum of diabatic heating is still located in moving direction, but additionally the diabatic heating is found in the spiral rain bands. Thus, the vortex is drifted to the SST anomaly due to the asymmetry in the TC circulation induced by the diabatic heating term of the PVT. References Kilic, C., and C. C. Raible, Investigating the sensitivity of hurricane intensity and trajectory to sea surface temperatures using the regional model WRF, METEOROLOGISCHE ZEITSCHRIFT, 22(6), 685-698, 2013.

Contrasting Indian Ocean SST Variability With and Without ENSO Influence: A Coupled Atmosphere-Ocean GCM Study

NASA Technical Reports Server (NTRS)

Yu, Jin-Yi; Lau, K. M.

2004-01-01

In this study, we perform experiments with a coupled atmosphere-ocean general circulation model (CGCM) to examine ENSO's influence on the interannual sea surface temperature (SST) variability of the tropical Indian Ocean. The control experiment includes both the Indian and Pacific Oceans in the ocean model component of the CGCM (the Indo-Pacific Run). The anomaly experiment excludes ENSOs influence by including only the Indian Ocean while prescribing monthly-varying climatological SSTs for the Pacific Ocean (the Indian-Ocean Run). In the Indo-Pacific Run, an oscillatory mode of the Indian Ocean SST variability is identified by a multi-channel singular spectral analysis (MSSA). The oscillatory mode comprises two patterns that can be identified with the Indian Ocean Zonal Mode (IOZM) and a basin-wide warming/cooling mode respectively. In the model, the IOZM peaks about 3-5 months after ENSO reaches its maximum intensity. The basin mode peaks 8 months after the IOZM. The timing and associated SST patterns suggests that the IOZM is related to ENSO, and the basin- wide warming/cooling develops as a result of the decay of the IOZM spreading SST anomalies from western Indian Ocean to the eastern Indian Ocean. In contrast, in the Indian-Ocean Run, no oscillatory modes can be identified by the MSSA, even though the Indian Ocean SST variability is characterized by east-west SST contrast patterns similar to the IOZM. In both control and anomaly runs, IOZM-like SST variability appears to be associated with forcings from fluctuations of the Indian monsoon. Our modeling results suggest that the oscillatory feature of the IOZM is primarily forced by ENSO.

Small change, big difference: Sea surface temperature distributions for tropical coral reef ecosystems, 1950-2011

NASA Astrophysics Data System (ADS)

Lough, J. M.

2012-09-01

Changes in tropical sea surface temperature (SST) are examined over the period 1950-2011 during which global average temperature warmed by 0.4°C. Average tropical SST is warming about 70% of the global average rate. Spatially, significant warming between the two time periods, 1950-1980 and 1981-2011, has occurred across 65% of the tropical oceans. Coral reef ecosystems occupy 10% of the tropical oceans, typically in regions of warmer (+1.8°C) and less variable SST (80% of months within 3.3°C range) compared to non-reef areas (80% of months within 7.0°C range). SST is a primary controlling factor of coral reef distribution and coral reef organisms have already shown their sensitivity to the relatively small amount of warming observed so far through, for example, more frequent coral bleaching events and outbreaks of coral disease. Experimental evidence is also emerging of possible thermal thresholds in the range 30°C-32°C for some physiological processes of coral reef organisms. Relatively small changes in SST have already resulted in quite large differences in SST distribution with a maximum ‘hot spot’ of change in the near-equatorial Indo-Pacific which encompasses both the Indo-Pacific warm pools and the center of coral reef biodiversity. Identification of this hot spot of SST change is not new but this study highlights its significance with respect to tropical coral reef ecosystems. Given the modest amount of warming to date, changes in SST distribution are of particular concern for coral reefs given additional local anthropogenic stresses on many reefs and ongoing ocean acidification likely to increasingly compromise coral reef processes.

A teleconnection study of interannual sea surface temperature fluctuations in the northern North Atlantic and precipitation and runoff over Western Siberia

DOE Office of Scientific and Technical Information (OSTI.GOV)

Peng, S.; Mysak, L.A.

The spatial distributions of northern North Atlantic sea surface temperature and the high-latitude Northern Hemisphere sea level pressure anomalies averaged over six consecutive warm SST winters (1951-1956) and six consecutive cold SST winters (1971-1976) are examined. Three SLP anomaly difference (i.e., warm - cold winters) centers, significant at the 5% level, are observed over the northern North Atlantic, Europe, and western Siberia. This anomaly pattern is consistent in principle with what was identified in a related analyses by Palmer and Sun, who used composite data from selected winter months. The SLP difference centers over the northern North Atlantic and westernmore » Siberia are in phase. The impact of the latter center upon the runoff from the underlying Ob and Yenisey rivers and especially the teleconnection between SST anomalies in the northern North Atlantic and runoff of those two rivers via the atmosphere are investigated. The temporal cross-correlation analyses of 50 years (1930-1979) of records of SST, precipitation, and runoff anomalies indicate that the winter SST anomalies in the northern North Atlantic are significantly correlated with the winter and following summer runoff fluctuations of the Ob and Yenisey rivers. Positive (negative) northern North Atlantic SST anomalies are related to less (more) precipitation, and hence, less (more) runoff, over western Siberia. Discussions of possible physical mechanisms and processes that lead to the above relationships are attempted. The analyses of spatial distributions of precipitation in the warm and cold SST winters suggest that precipitation fluctuations over Europe and western Siberia may be affected by shifts of cyclone tracks associated with the SST variations in the northern North Atlantic. 27 refs., 9 figs.« less

Causes of the large warm bias in the Angola-Benguela Frontal Zone in the Norwegian Earth System Model

NASA Astrophysics Data System (ADS)

Koseki, Shunya; Keenlyside, Noel; Demissie, Teferi; Toniazzo, Thomas; Counillon, Francois; Bethke, Ingo; Ilicak, Mehmet; Shen, Mao-Lin

2018-06-01

We have investigated the causes of the sea surface temperature (SST) bias in the Angola-Benguela Frontal Zone (ABFZ) of the southeastern Atlantic Ocean simulated by the Norwegian Earth System Model (NorESM). Similar to other coupled-models, NorESM has a warm SST bias in the ABFZ of up to 8 °C in the annual mean. Our analysis of NorESM reveals that a cyclonic surface wind bias over the ABFZ drives a locally excessively strong southward (0.05 m/s (relative to observation)) Angola Current displacing the ABFZ southward. A series of uncoupled stand-alone atmosphere and ocean model simulations are performed to investigate the cause of the coupled model bias. The stand-alone atmosphere model driven with observed SST exhibits a similar cyclonic surface circulation bias; while the stand-alone ocean model forced with the reanalysis data produces a warm SST in the ABFZ with a magnitude approximately half of that in the coupled NorESM simulation. An additional uncoupled sensitivity experiment shows that the atmospheric model's local negative surface wind curl generates anomalously strong Angola Current at the ocean surface. Consequently, this contributes to the warm SST bias in the ABFZ by 2 °C (compared to the reanalysis forced simulation). There is no evidence that local air-sea feedbacks among wind stress curl, SST, and sea level pressure (SLP) affect the ABFZ SST bias. Turbulent surface heat flux differences between coupled and uncoupled experiments explain the remaining 2 °C warm SST bias in NorESM. Ocean circulation, upwelling and turbulent heat flux errors all modulate the intensity and the seasonality of the ABFZ errors.

Effects of Northern Hemisphere Sea Surface Temperature Changes on the Global Air Quality

NASA Astrophysics Data System (ADS)

Yi, K.; Liu, J.

2017-12-01

The roles of regional sea surface temperature (SST) variability on modulating the climate system and consequently the air quality are investigated using the Community Earth System Model (CESM). Idealized, spatially uniform SST anomalies of +/- 1 °C are superimposed onto the North Pacific, North Atlantic, and North Indian Oceans individually. Ignoring the response of natural emissions, our simulations suggest large seasonal and regional variability of surface O3 and PM2.5 concentrations in response to SST anomalies, especially during boreal summers. Increasing the SST by 1 °C in one of the oceans generally decreases the surface O3 concentrations from 1 to 5 ppbv while increases the anthropogenic PM2.5 concentrations from 0.5 to 3 µg m-3. We implement the integrated process rate (IPR) analysis in CESM and find that meteorological transport in response to SST changes is the key process causing air pollutant perturbations in most cases. During boreal summers, the increase in tropical SST over different ocean basins enhances deep convection, which significantly increases the air temperature over the upper troposphere and trigger large-scale subsidence over nearby and remote regions. These processes tend to increase tropospheric stability and suppress rainfall at lower mid-latitudes. Consequently, it reduces the vertical transport of O3 to the surface while facilitating the accumulation of PM2.5 concentrations over most regions. In addition, this regional SST warming may also considerably suppress intercontinental transport of air pollution as confirmed with idealized CO-like tracers. Our findings indicate a robust linkage between basin-scale SST variability and regional air quality, which can help local air quality management.

Sensitivity of Surface Temperature to Oceanic Forcing via q-Flux Green’s Function Experiments. Part I: Linear Response Function

DOE Office of Scientific and Technical Information (OSTI.GOV)

Liu, Fukai; Lu, Jian; Garuba, Oluwayemi

This paper explores the use of linear response function (LRF) to relate the mean sea surface temperature (SST) response to prescribed ocean heat convergence (q-flux) forcings. Two methods for constructing the LRF based on the fluctuation-dissipation theorem (FDT) and Green’s function (GRF) are examined. A 900-year preindustrial simulation from the Community Earth System Model with a slab ocean (CESM-SOM) is used to estimate the LRF using FDT. For GRF, 106 pairs of CESM-SOM simulations with warm and cold q-flux patches are performed. FDT is found to have skill in estimating the SST response to a q-flux forcing when the localmore » SST response is strong, but it fails in inverse estimation of the q-flux forcing for a given SST pattern. In contrast, GRF is shown to be reasonably accurate in estimating both SST response and q-flux forcing. Possible degradation in FDT may be attributed to insufficient data sampling, significant departures of the SST data from Gaussian, and the non-normality of the constructed operator. The accurately estimated GRF-based LRF is used to (i) generate a global surface temperature sensitivity map that shows the q-flux forcing in higher latitudes to be three to four times more effective than in low latitudes in producing global surface warming; (ii) identify the most excitable SST mode (neutral vector) resembling Interdecadal Pacific Oscillation; and (iii) estimate a time-invariant q-flux forcing needed for maintaining the GHG-induced SST warming pattern. The GRF experiments will be used to construct LRF for other variables to further explore climate sensitivities and feedbacks.« less

Balance between somatostatin and D2 receptor expression drives TSH-secreting adenoma response to somatostatin analogues and dopastatins.

PubMed

Gatto, Federico; Barbieri, Federica; Gatti, Monica; Wurth, Roberto; Schulz, Stefan; Ravetti, Jean-Louis; Zona, Gianluigi; Culler, Michael D; Saveanu, Alexandru; Giusti, Massimo; Minuto, Francesco; Hofland, Leo J; Ferone, Diego; Florio, Tullio

2012-03-01

First-line therapy for thyrotropin-secreting pituitary adenomas (TSHomas) is neurosurgery, while medical treatment rests mainly on somatostatin analogues. Clinically available sst(2) -preferring analogues, octreotide and lanreotide, induce normalization of hormone levels in approximately 90% of patients and tumour shrinkage in 45%. We evaluated somatostatin 1, 2, 3 and 5 and dopamine D2 receptor expression in tumour samples from three TSHomas, and the relationships between receptor expression, in vitro antiproliferative response and clinical data, including octreotide test and three months of therapy with octreotide long-acting repeatable (LAR). TSHoma cell proliferation was tested in vitro using octreotide, cabergoline and two chimeric compounds, BIM-23A760 and BIM-23A387. All patients showed significant TSH lowering to acute octreotide test, but a hormonal response to long-term treatment was observed in only two patients, showing a high sst(5) /sst(2) ratio. Patient 2, characterized by high expression of sst(2) and sst(1) and a relative lower expression of sst(5) , experienced tachyphylaxis after prolonged octreotide treatment. In vitro, the somatostatin/dopamine receptor agonist BIM-23A760 caused the highest antiproliferative effect among those tested. Combined treatment with octreotide and cabergoline displayed an additive effect of magnitude comparable to that of the other chimeric compound (BIM-23A387). Octreotide resistance was confirmed in cells isolated from the nonresponder patient, although it could be overcome by treatment with the chimeric compounds.   A high sst(5) /sst(2) ratio might be predictive of a positive outcome to long-term treatment with somatostatin analogues in TSHomas. Moreover, combined somatostatin and D(2) receptor targeting might be considered as a potential tool to improve the response rate in octreotide-resistant tumours. © 2012 Blackwell Publishing Ltd.

A Tropical View of Atlantic Multidecadal SST Variability over the Last Two Millennia

NASA Astrophysics Data System (ADS)

Wurtzel, J. B.; Black, D. E.; Thunell, R.; Peterson, L. C.; Tappa, E. J.; Rahman, S.

2011-12-01

Instrumental and proxy-reconstructions show the existence of a 60-80 year periodicity in Atlantic sea surface temperature (SST), known as the Atlantic Multidecadal Oscillation (AMO). The AMO is correlated with circum-tropical Atlantic climate phenomena such as Sahel and Nordeste rainfall, as well as Atlantic hurricane patterns. Though it has been suggested that the AMO is controlled by thermohaline circulation, much debate exists as to whether the SST fluctuations are a result of anthropogenic forcing or natural climate variability. Our ability to address this issue has been limited by instrumental SST records that rarely extend back more than 50-100 years and proxy reconstructions that are largely terrestrial-based. Here we present a high-resolution marine sediment-derived reconstruction of seasonal tropical Atlantic SSTs from the Cariaco Basin spanning the past two millennia that is correlated with instrumental SSTs and the AMO for the period of overlap. The full record demonstrates that seasonality is largely controlled by variations in winter/spring SST. Wavelet analysis of the proxy data suggest that variability in the 60-80 year band evolved 250 years ago, while 40-60 year periodicities dominate earlier parts of the record. At least over the last millennia, multidecadal- and centennial- scale SST variability in the tropical Atlantic appears related to Atlantic meridional overturning circulation (AMOC) fluctuations and its associated northward heat transport that in turn may be driven by solar variability. An inverse correlation between the tropical proxy annual average SST record and Δ14C indicates that the tropics experienced positive SST anomalies during times of reduced solar activity, possibly as a result of decreased AMOC strength (Figure 1).

Equilibrium Atmospheric Response to North Atlantic SST Anomalies.

NASA Astrophysics Data System (ADS)

Kushnir, Yochanan; Held, Isaac M.

1996-06-01

The equilibrium general circulation model (GCM) response to sea surface temperature (SST) anomalies in the western North Atlantic region is studied. A coarse resolution GCM, with realistic lower boundary conditions including topography and climatological SST distribution, is integrated in perpetual January and perpetual October modes, distinguished from one another by the strength of the midlatitude westerlies. An SST anomaly with a maximum of 4°C is added to the climatological SST distribution of the model with both positive and negative polarity. These anomaly runs are compared to one another, and to a control integration, to determine the atmospheric response. In all cases warming (cooling) of the midlatitude ocean surface yields a warming (cooling) of the atmosphere over and to the east of the SST anomaly center. The atmospheric temperature change is largest near the surface and decreases upward. Consistent with this simple thermal response, the geopotential height field displays a baroclinic response with a shallow anomalous low somewhat downstream from the warm SST anomaly. The equivalent barotropic, downstream response is weak and not robust. To help interpret the results, the realistic GCM integrations are compared with parallel idealized model runs. The idealized model has full physics and a similar horizontal and vertical resolution, but an all-ocean surface with a single, permanent zonal asymmetry. The idealized and realistic versions of the GCM display compatible response patterns that are qualitatively consistent with stationary, linear, quasigeostrophic theory. However, the idealized model response is stronger and more coherent. The differences between the two model response patterns can be reconciled based on the size of the anomaly, the model treatment of cloud-radiation interaction, and the static stability of the model atmosphere in the vicinity of the SST anomaly. Model results are contrasted with other GCM studies and observations.

Long-term changes in the Northwestern Atlantic and Mediterranean SST from 1982 to 2016: A contribution of the Operational Oceanography to the determination of the present day Climate

NASA Astrophysics Data System (ADS)

Artale, Vincenzo; Buongiorno Nardelli, Bruno; Marullo, Salvatore; Pisano, Andrea; Santoleri, Rosalia; Tronconi, Cristina

2017-04-01

Estimating long-term SST changes is crucial to evaluate global warming impact at regional scales. Here, we analyze the Mediterranean (MED) and the Northwestern Atlantic Box (NWA) SST changes over the last 34 years (1982 - 2016) by combining reprocessed (REP) and near-real-time (NRT) data. Actually, the Italian National Research Council (CNR) has recently produced daily (nighttime), 4 km resolution REP MED level 4 datasets (REP L4), also covering the adjacent Atlantic region, based on the latest Pathfinder v5.2 AVHRR dataset (1982-2012). These data represent the longest satellite MED SST L4 time series and are freely distributed through the European Copernicus Marine Environment Monitoring Service (CMEMS). However, as Pathfinder has not yet released an update of its product, the REP data end in 2012. To fill in the gap between 2013 and 2016, we investigated the possibility to extend the time series by using the Mediterranean near real time (NRT), multi-sensor L4 SST data at Ultra-High spatial Resolution (UHR) produced by CNR, which are distributed through CMEMS and now mirrored at GHRSST. Since this product is available since 2008, the consistency with the REP has been assessed. Combining the REP L4 data (1982-2012) and a bias-corrected version of the NRT L4 data (2013-2016), we built the SST time series and provided updated estimates of the MED and NWA SST trends. The analysis shows that The Atlantic Box and The Mediterranean Sea have similar trend behavior until 2008. Afterward the Mediterranean Sea SST continued to increase while the Atlantic Box persisted in its warming pause.

Assimilating Satellite SST Observations into a Diurnal Cycle Model

NASA Astrophysics Data System (ADS)

Pimentel, S.; Haines, K.; Nichols, N. K.

2006-12-01

The wealth of satellite sea surface temperature (SST) data now available opens the possibility of large improvements in SST estimation. However the use of such data is not straight forward; a major difficulty in assimilating satellite observations is that they represent a near surface temperature, whereas in ocean models the top level represents the temperature at a greater depth. During the day, under favourable conditions of clear skies and calm winds, the near surface temperature is often seen to have a diurnal cycle that is picked up in satellite observations. Current ocean models do not have the vertical or temporal resolution to adequately represent this daytime warming. The usual approach is to discard daytime observations as they are considered diurnally `corrupted'. A new assimilation technique is developed here that assimilates observations into a diurnal cycle model. The diurnal cycle of SSTs are modelled using a 1-D mixed layer model with fine near surface resolution and 6 hourly forcing from NWP analyses. The accuracy of the SST estimates are hampered by uncertainties in the forcing data. The extent of diurnal SST warming at a particular location and time is predominately governed by a non-linear response to cloud cover and sea surface wind speeds which greatly affect the air-sea fluxes. The method proposed here combines infrared and microwave SST satellite observations in order to derive corrections to the cloud cover and wind speed values over the day. By adjusting the forcing, SST estimation and air-sea fluxes should be improved and are at least more consistent with each other. This new technique for assimilating SST data can be considered a tool for producing more accurate diurnal warming estimates.

Influence of equatorial QBO (quasi-biennial oscillation) and SST (sea-surface temperature) on polar total ozone, and the 1990 Antarctic ozone hole

DOE Office of Scientific and Technical Information (OSTI.GOV)

Angell, J.K.

1990-09-01

Based on data through 1989, comparisons are made between the variation of total ozone at Resolute, Canada (75{degree}N) and South Pole, and the variation of low-stratospheric temperature at Singapore (reflecting the equatorial QBO) and SST in eastern equatorial Pacific (reflecting the ENSO phenomenon). Total-ozone variations at Resolute have been more closely related to the QBO, whereas the total-ozone variations at South Pole appear to have been almost equally related to QBO and SST. When the average of 50 mb and 30 mb June-July-August (JJA) values of Singapore temperature ({bar T}) increased from one year to the next, the decrease inmore » South Pole springtime total ozone for the same years averaged 21 {plus minus} 14% greater than when {bar T} decreased. When the JJA values of equatorial SST increased from one year to the next, the decrease in South Pole springtime total ozone for the same years averaged 18 {plus minus} 12% greater than when SST decreased. In the 6 cases when JJA values of both Singapore {bar T} and equatorial SST increased from one year to the next, the spring values of South Pole total ozone have decreased, whereas in the 6 cases when both {bar T} and SST decreased from one year to the next, South Pole total ozone has increased. Both Singapore {bar T} and equatorial SST will probably be warmer in JJA of 1990 than they were in JJA of 1989 suggesting, based on these previous relations, an even deeper Antarctic ozone hole in 1990 than in 1989 and ending the biennial variation in depth of the hole of the last 6 years.« less

Late Holocene Sea Surface Temperature Trends in the Eastern Tropical Pacific

NASA Astrophysics Data System (ADS)

Rustic, G. T.; Koutavas, A.; Marchitto, T. M., Jr.

2015-12-01

The Eastern Tropical Pacific (ETP) is a highly dynamic ocean region capable of exerting influencing on global climate as illustrated by the El Niño-Southern Oscillation (ENSO). The sea surface temperature (SST) history of this region in past millennia is poorly constrained due to the lack of in situ records with appropriate resolution. Here we present a ~2700 year sub-centennially resolved SST reconstruction from Mg/Ca ratios of the planktonic foraminifer Globigerinoides ruber from Galápagos sediments. The ETP SST record exhibits a long-term cooling trend of over 0.2°C/ky that is similar to Northern Hemisphere multi-proxy temperature trends suggesting a common origin, likely due to insolation forcing. The ETP remains in-phase with Northern Hemisphere climate records through the warm Roman Climate Optimum (~0-400CE), cooler Dark Ages Cold Period (~450-850CE), and through the peak warming of the Medieval Climate Anomaly (900-1150 CE) when SST is within error of modern. Following peak MCA, the ETP cooled rapidly and then rebounded at ~1500 CE during the coldest portion of the Little Ice Age. Overall the data suggest an out-of-phase relationship during much of the last millennium, which we attribute to dynamical adjustments consistent with the "dynamical ocean thermostat" mechanism. Further evidence for these dynamical adjustments comes from reconstructions of the east-west zonal SST gradient using existing Mg/Ca SST reconstructions from the western Pacific warm pool. The last millennium has been the most dynamic period over the past 2700 years, with significant (~1 °C) SST variability in the ETP and modulation of the zonal gradient. A combination of dynamical and thermodynamic mechanisms are invoked to explain the region's complex SST history.

Expression of Somatostatin, cortistatin, and their receptors, as well as dopamine receptors, but not of neprilysin, are reduced in the temporal lobe of Alzheimer's disease patients.

PubMed

Gahete, Manuel D; Rubio, Alicia; Durán-Prado, Mario; Avila, Jesús; Luque, Raúl M; Castaño, Justo P

2010-01-01

Alzheimer's disease (AD) is a progressive neurodegenerative disorder characterized by severe cognitive deficit, wherein the impairment of episodic memory is the major hallmark. AD patients exhibit augmented accumulation of amyloid-beta (Abeta) and hyperphosphorylated tau protein in specific brain regions. In addition, several neuropeptides/neurotransmitter axes clearly associated with cognitive processes, Abeta turnover, and tau phosphorylation have also been found to be impaired in AD, such as somatostatin (SST)/cortistatin (CST) and dopamine (DA) systems. However, to date there is no precise quantitative data on the expression of these systems in the human brain of AD and normal patients. Here we measured by quantitative real-time PCR the mRNA levels of SST/CST, their receptors (sst1-5 and DA receptors (drd1-5) in addition to neprilysin (a SST-regulated enzyme involved in Abeta degradation) in three regions of the temporal lobe, one of the cortical regions most severely affected by AD. Our results reveal that some components of SST/CST- and DA-axes are divergently altered in the three areas of AD patients. Despite this region-specific regulation, an overall, common reduction of these systems was observed in the temporal lobe of AD patients. Conversely, neprilysin expression was not altered in AD, suggesting that Abeta accumulation observed in AD is due to a lack of neprilysin activation by SST rather than to a reduction of its expression. Collectively, our results define a comprehensive scenario wherein reduction of ssts, drds, and sst ligands SST and CST, could be involved, at least in part, in some of the more important defects observed in AD.

Impact of Monsoon to Aquatic Productivity and Fish Landing at Pesawaran Regency Waters

NASA Astrophysics Data System (ADS)

Kunarso; Zainuri, Muhammad; Ario, Raden; Munandar, Bayu; Prayogi, Harmon

2018-02-01

Monsoon variability influences the productivity processes in the ocean and has different responses in each waters. Furthermore, variability of marine productivity affects to the fisheries resources fluctuation. This research has conducted using descriptive method to investigate the consequences of monsoon variability to aquatic productivity, sea surface temperature (SST), fish catches, and fish season periods at Pesawaran Regency waters, Lampung. Variability of aquatic productivity was determined based on chlorophyll-a indicator from MODIS satellite images. Monsoon variability was governed based on wind parameters and fish catches from fish landing data of Pesawaran fish market. The result showed that monsoon variability had affected to aquatic productivity, SST, and fish catches at Pesawaran Regency waters. Maximum wind speed and lowest SST occurred twice in a year, December to March and August to October, which the peaks were on January (2.55 m/s of wind speed and 29.66°C of SST) and September (2.44 m/s of wind speed and 29.06°C of SST). Also, Maximum aquatic productivity happened on January to March and July to September, which it was arisen simultaneously with maximum wind speed and the peaks was 0.74 mg/m3 and 0.78 mg/m3, on February and August respectively. The data showed that fish catches decreased along with strong wind speed and low SST. However, when weak wind speed and high SST occurred, fish catches increased. The correlation between Catch per Unit Effort (CPUE) with SST, wind speed, and chlorophyll-a was at value 0.76, -0.67, and -0.70, respectively. The high rate fish catches in Pesawaran emerged on March-May and September-December.

Inter-decadal change of the lagged inter-annual relationship between local sea surface temperature and tropical cyclone activity over the western North Pacific

NASA Astrophysics Data System (ADS)

Zhao, Haikun; Wu, Liguang; Raga, G. B.

2018-02-01

This study documents the inter-decadal change of the lagged inter-annual relationship between the TC frequency (TCF) and the local sea surface temperature (SST) in the western North Pacific (WNP) during 1979-2014. An abrupt shift of the lagged relationship between them is observed to occur in 1998. Before the shift (1979-1997), a moderately positive correlation (0.35) between previous-year local SST and TCF is found, while a significantly negative correlation (- 0.71) is found since the shift (1998-2014). The inter-decadal change of the lagged relationship between TCF and local SST over the WNP is also accompanied by an inter-decadal change in the lagged inter-annual relationship between large-scale factors affecting TCs and local SST over the WNP. During 1998-2014, the previous-year local SST shows a significant negative correlation with the mid-level moisture and a significant positive correlation with the vertical wind shear over the main development region of WNP TC genesis. Almost opposite relationships are seen during 1979-1997, with a smaller magnitude of the correlation coefficients. These changes are consistent with the changes of the lagged inter-annual relationship between upper- and lower-level winds and local SST over the WNP. Analyses further suggests that the inter-decadal shift of the lagged inter-annual relationship between WNP TCF and local SST may be closely linked to the inter-decadal change of inter-annual SST transition over the tropical central-eastern Pacific associated with the climate regime shift in the late 1990s. Details on the underlying physical process need further investigation using observations and simulations.

Opposing Effects of Acute versus Chronic Blockade of Frontal Cortex Somatostatin-Positive Inhibitory Neurons on Behavioral Emotionality in Mice

PubMed Central

Soumier, Amelie; Sibille, Etienne

2014-01-01

Reduced expression of somatostatin (SST) is reported across chronic brain conditions including major depression and normal aging. SST is a signaling neuropeptide and marker of gamma-amino butyric acid (GABA) neurons, which specifically inhibit pyramidal neuron dendrites. Studies in auditory cortex suggest that chronic reduction in dendritic inhibition induces compensatory homeostatic adaptations that oppose the effects of acute inhibition. Whether such mechanisms occur in frontal cortex (FC) and affect behavioral outcome is not known. Here, we used two complementary viral vector strategies to examine the effects of acute vs chronic inhibition of SST-positive neurons on behavioral emotionality in adult mice. SST-IRES-Cre mice were injected in FC (prelimbic/precingulate) with CRE-dependent adeno-associated viral (AAV) vector encoding the engineered Gi/o-coupled human muscarinic M4 designer receptor exclusively activated by a designer drug (DREADD-hM4Di) or a control reporter (AAV-DIO-mCherry) for acute or chronic cellular inhibition. A separate cohort was injected with CRE-dependent AAV vectors expressing diphtheria toxin (DTA) to selectively ablate FC SST neurons. Mice were assessed for anxiety- and depressive-like behaviors (defined as emotionality). Results indicate that acute inhibition of FC SST neurons increased behavioral emotionality, whereas chronic inhibition decreased behavioral emotionality. Furthermore, ablation of FC SST neurons also decreased behavioral emotionality under baseline condition and after chronic stress. Together, our results reveal opposite effects of acute and chronic inhibition of FC SST neurons on behavioral emotionality and suggest the recruitment of homeostatic plasticity mechanisms that have implications for understanding the neurobiology of chronic brain conditions affecting dendritic-targeting inhibitory neurons. PMID:24690741

Opposing effects of acute versus chronic blockade of frontal cortex somatostatin-positive inhibitory neurons on behavioral emotionality in mice.

PubMed

Soumier, Amelie; Sibille, Etienne

2014-08-01

Reduced expression of somatostatin (SST) is reported across chronic brain conditions including major depression and normal aging. SST is a signaling neuropeptide and marker of gamma-amino butyric acid (GABA) neurons, which specifically inhibit pyramidal neuron dendrites. Studies in auditory cortex suggest that chronic reduction in dendritic inhibition induces compensatory homeostatic adaptations that oppose the effects of acute inhibition. Whether such mechanisms occur in frontal cortex (FC) and affect behavioral outcome is not known. Here, we used two complementary viral vector strategies to examine the effects of acute vs chronic inhibition of SST-positive neurons on behavioral emotionality in adult mice. SST-IRES-Cre mice were injected in FC (prelimbic/precingulate) with CRE-dependent adeno-associated viral (AAV) vector encoding the engineered Gi/o-coupled human muscarinic M4 designer receptor exclusively activated by a designer drug (DREADD-hM4Di) or a control reporter (AAV-DIO-mCherry) for acute or chronic cellular inhibition. A separate cohort was injected with CRE-dependent AAV vectors expressing diphtheria toxin (DTA) to selectively ablate FC SST neurons. Mice were assessed for anxiety- and depressive-like behaviors (defined as emotionality). Results indicate that acute inhibition of FC SST neurons increased behavioral emotionality, whereas chronic inhibition decreased behavioral emotionality. Furthermore, ablation of FC SST neurons also decreased behavioral emotionality under baseline condition and after chronic stress. Together, our results reveal opposite effects of acute and chronic inhibition of FC SST neurons on behavioral emotionality and suggest the recruitment of homeostatic plasticity mechanisms that have implications for understanding the neurobiology of chronic brain conditions affecting dendritic-targeting inhibitory neurons.

A spurious warming trend in the NMME equatorial Pacific SST hindcasts

NASA Astrophysics Data System (ADS)

Shin, Chul-Su; Huang, Bohua

2017-06-01

Using seasonal hindcasts of six different models participating in the North American Multimodel Ensemble project, the trend of the predicted sea surface temperature (SST) in the tropical Pacific for 1982-2014 at each lead month and its temporal evolution with respect to the lead month are investigated for all individual models. Since the coupled models are initialized with the observed ocean, atmosphere, land states from observation-based reanalysis, some of them using their own data assimilation process, one would expect that the observed SST trend is reasonably well captured in their seasonal predictions. However, although the observed SST features a weak-cooling trend for the 33-year period with La Niña-like spatial pattern in the tropical central-eastern Pacific all year round, it is demonstrated that all models having a time-dependent realistic concentration of greenhouse gases (GHG) display a warming trend in the equatorial Pacific that amplifies as the lead-time increases. In addition, these models' behaviors are nearly independent of the starting month of the hindcasts although the growth rates of the trend vary with the lead month. This key characteristic of the forecasted SST trend in the equatorial Pacific is also identified in the NCAR CCSM3 hindcasts that have the GHG concentration for a fixed year. This suggests that a global warming forcing may not play a significant role in generating the spurious warming trend of the coupled models' SST hindcasts in the tropical Pacific. This model SST trend in the tropical central-eastern Pacific, which is opposite to the observed one, causes a developing El Niño-like warming bias in the forecasted SST with its peak in boreal winter. Its implications for seasonal prediction are discussed.

The absence of an Atlantic imprint on the multidecadal variability of wintertime European temperature.

PubMed

Yamamoto, Ayako; Palter, Jaime B

2016-03-15

Northern Hemisphere climate responds sensitively to multidecadal variability in North Atlantic sea surface temperature (SST). It is therefore surprising that an imprint of such variability is conspicuously absent in wintertime western European temperature, despite that Europe's climate is strongly influenced by its neighbouring ocean, where multidecadal variability in basin-average SST persists in all seasons. Here we trace the cause of this missing imprint to a dynamic anomaly of the atmospheric circulation that masks its thermodynamic response to SST anomalies. Specifically, differences in the pathways Lagrangian particles take to Europe during anomalous SST winters suppress the expected fluctuations in air-sea heat exchange accumulated along those trajectories. Because decadal variability in North Atlantic-average SST may be driven partly by the Atlantic Meridional Overturning Circulation (AMOC), the atmosphere's dynamical adjustment to this mode of variability may have important implications for the European wintertime temperature response to a projected twenty-first century AMOC decline.

Estimating Sea Surface Temperature Measurement Methods Using Characteristic Differences in the Diurnal Cycle

NASA Astrophysics Data System (ADS)

Carella, G.; Kennedy, J. J.; Berry, D. I.; Hirahara, S.; Merchant, C. J.; Morak-Bozzo, S.; Kent, E. C.

2018-01-01

Lack of reliable observational metadata represents a key barrier to understanding sea surface temperature (SST) measurement biases, a large contributor to uncertainty in the global surface record. We present a method to identify SST measurement practice by comparing the observed SST diurnal cycle from individual ships with a reference from drifting buoys under similar conditions of wind and solar radiation. Compared to existing estimates, we found a larger number of engine room-intake (ERI) reports post-World War II and in the period 1960-1980. Differences in the inferred mixture of observations lead to a systematic warmer shift of the bias adjusted SST anomalies from 1980 compared to previous estimates, while reducing the ensemble spread. Changes in mean field differences between bucket and ERI SST anomalies in the Northern Hemisphere over the period 1955-1995 could be as large as 0.5°C and are not well reproduced by current bias adjustment models.

Tropical cyclone rainfall area controlled by relative sea surface temperature

PubMed Central

Lin, Yanluan; Zhao, Ming; Zhang, Minghua

2015-01-01

Tropical cyclone rainfall rates have been projected to increase in a warmer climate. The area coverage of tropical cyclones influences their impact on human lives, yet little is known about how tropical cyclone rainfall area will change in the future. Here, using satellite data and global atmospheric model simulations, we show that tropical cyclone rainfall area is controlled primarily by its environmental sea surface temperature (SST) relative to the tropical mean SST (that is, the relative SST), while rainfall rate increases with increasing absolute SST. Our result is consistent with previous numerical simulations that indicated tight relationships between tropical cyclone size and mid-tropospheric relative humidity. Global statistics of tropical cyclone rainfall area are not expected to change markedly under a warmer climate provided that SST change is relatively uniform, implying that increases in total rainfall will be confined to similar size domains with higher rainfall rates. PMID:25761457

Estimation of sea surface temperature from remote sensing in the 11-13 micron window region

NASA Technical Reports Server (NTRS)

Prabhakara, C.; Dalu, G.; Kunde, V. G.

1974-01-01

The Nimbus 3 and 4 IRIS spectral data in the 11-13 micron water vapor window region are analyzed to determine the sea surface temperature (SST). The high spectral resolution data of IRIS are averaged over approximately 1 micron wide intervals to simulate channels of a radiometer to measure the SST. Three channels are utilized to measure SST over cloud-free oceans. However, two of these channels are sufficient in routine SST determination. The differential absorption properties of water vapor in the two channels enable one to determine the water vapor absorption correction without detailed knowledge of the vertical profiles of temperature and water vapor. The feasibility of determining the SST is demonstrated globally with Nimbus 3 data where cloud-free areas can be selected with the help of albedo data from the MRIR experiment on board the same satellite.

Sea surface temperature anomalies, planetary waves, and air-sea feedback in the middle latitudes

NASA Technical Reports Server (NTRS)

Frankignoul, C.

1985-01-01

Current analytical models for large-scale air-sea interactions in the middle latitudes are reviewed in terms of known sea-surface temperature (SST) anomalies. The scales and strength of different atmospheric forcing mechanisms are discussed, along with the damping and feedback processes controlling the evolution of the SST. Difficulties with effective SST modeling are described in terms of the techniques and results of case studies, numerical simulations of mixed-layer variability and statistical modeling. The relationship between SST and diabatic heating anomalies is considered and a linear model is developed for the response of the stationary atmosphere to the air-sea feedback. The results obtained with linear wave models are compared with the linear model results. Finally, sample data are presented from experiments with general circulation models into which specific SST anomaly data for the middle latitudes were introduced.

Identification of 16S Ribosomal DNA-Defined Bacterial Populations at a Shallow Submarine Hydrothermal Vent near Milos Island (Greece)

PubMed Central

Sievert, Stefan M.; Kuever, Jan; Muyzer, Gerard

2000-01-01

In a recent publication (S. M. Sievert, T. Brinkhoff, G. Muyzer, W. Ziebis, and J. Kuever, Appl. Environ. Microbiol. 65:3834–3842, 1999) we described spatiotemporal changes in the bacterial community structure at a shallow-water hydrothermal vent in the Aegean Sea near the isle of Milos (Greece). Here we describe identification and phylogenetic analysis of the predominant bacterial populations at the vent site and their distribution at the vent site as determined by sequencing of DNA molecules (bands) excised from denaturing gradient gels. A total of 36 bands could be sequenced, and there were representatives of eight major lineages of the domain Bacteria. Cytophaga-Flavobacterium and Acidobacterium were the most frequently retrieved bacterial groups. Less than 33% of the sequences exhibited 90% or more identity with cultivated organisms. The predominance of putative heterotrophic populations in the sequences retrieved is explained by the input of allochthonous organic matter at the vent site. PMID:10877814

Division of attention as a function of the number of steps, visual shifts, and memory load

NASA Technical Reports Server (NTRS)

Chechile, R. A.; Butler, K.; Gutowski, W.; Palmer, E. A.

1986-01-01

The effects on divided attention of visual shifts and long-term memory retrieval during a monitoring task are considered. A concurrent vigilance task was standardized under all experimental conditions. The results show that subjects can perform nearly perfectly on all of the time-shared tasks if long-term memory retrieval is not required for monitoring. With the requirement of memory retrieval, however, there was a large decrease in accuracy for all of the time-shared activities. It was concluded that the attentional demand of longterm memory retrieval is appreciable (even for a well-learned motor sequence), and thus memory retrieval results in a sizable reduction in the capability of subjects to divide their attention. A selected bibliography on the divided attention literature is provided.

Tachyon search speeds up retrieval of similar sequences by several orders of magnitude.

PubMed

Tan, Joshua; Kuchibhatla, Durga; Sirota, Fernanda L; Sherman, Westley A; Gattermayer, Tobias; Kwoh, Chia Yee; Eisenhaber, Frank; Schneider, Georg; Maurer-Stroh, Sebastian

2012-06-15

The usage of current sequence search tools becomes increasingly slower as databases of protein sequences continue to grow exponentially. Tachyon, a new algorithm that identifies closely related protein sequences ~200 times faster than standard BLAST, circumvents this limitation with a reduced database and oligopeptide matching heuristic. The tool is publicly accessible as a webserver at http://tachyon.bii.a-star.edu.sg and can also be accessed programmatically through SOAP.

Regulatory sequence analysis tools.

PubMed

van Helden, Jacques

2003-07-01

The web resource Regulatory Sequence Analysis Tools (RSAT) (http://rsat.ulb.ac.be/rsat) offers a collection of software tools dedicated to the prediction of regulatory sites in non-coding DNA sequences. These tools include sequence retrieval, pattern discovery, pattern matching, genome-scale pattern matching, feature-map drawing, random sequence generation and other utilities. Alternative formats are supported for the representation of regulatory motifs (strings or position-specific scoring matrices) and several algorithms are proposed for pattern discovery. RSAT currently holds >100 fully sequenced genomes and these data are regularly updated from GenBank.

Error Estimation in an Optimal Interpolation Scheme for High Spatial and Temporal Resolution SST Analyses

NASA Technical Reports Server (NTRS)

Rigney, Matt; Jedlovec, Gary; LaFontaine, Frank; Shafer, Jaclyn

2010-01-01

Heat and moisture exchange between ocean surface and atmosphere plays an integral role in short-term, regional NWP. Current SST products lack both spatial and temporal resolution to accurately capture small-scale features that affect heat and moisture flux. NASA satellite is used to produce high spatial and temporal resolution SST analysis using an OI technique.

Spherical harmonic expansion of the Levitus Sea surface topography

NASA Technical Reports Server (NTRS)

Engelis, Theodossios

1987-01-01

Prior information for the stationary sea surface topography (SST) may be needed in altimetric solutions that intend to simultaneously improve the gravity field and determine the SST. For this purpose the oceanographically derived SST estimates are represented by a spherical harmonic expansion. The spherical harmonic coefficients are computed from a least squares adjustment of the data covering the majority of the oceanic regions of the world. Several tests are made to determine the optimum maximum degree of solution and the best configuration of the geometry of the data in order to obtain a solution that fits the data and also provides a good spectral representation of the SST.

Interleukin-33/ST2 system attenuates aldosterone-induced adipogenesis and inflammation.

PubMed

Martínez-Martínez, Ernesto; Cachofeiro, Victoria; Rousseau, Elodie; Álvarez, Virginia; Calvier, Laurent; Fernández-Celis, Amaya; Leroy, Céline; Miana, María; Jurado-López, Raquel; Briones, Ana M; Jaisser, Frederic; Zannad, Faiez; Rossignol, Patrick; López-Andrés, Natalia

2015-08-15

Interleukin-33 (IL-33) but not soluble ST2 (sST2) exerts anti-inflammatory and protective effects in several tissues. Aldosterone, a proinflammatory mediator which promotes adipogenesis, is elevated in obese patients. The aim of this study was to investigate the interactions between IL-33/ST2 system and Aldosterone in adipose tissue. Rats fed a high fat diet presented increased sST2 expression, diminished IL-33/sST2 ratio and enhanced levels of differentiation and inflammation in adipose tissue as compared to controls. A similar pattern was observed in adipose tissue from C57BL/6 Aldosterone-treated mice. In both animal models, Aldosterone was correlated with sST2. Treatment of 3T3-L1 adipocytes with IL-33 delayed adipocyte differentiation diminished lipid accumulation and decreased inflammation. Aldosterone decreased IL-33 and increased sST2 expressions in differentiated adipocytes. Aldosterone-induced adipocyte differentiation and inflammation were blocked by IL-33 treatment, but sST2 did not exert any effects. The crosstalk between IL-33/ST2 and Aldosterone could be relevant in the metabolic consequences of obesity. Copyright © 2015 Elsevier Ireland Ltd. All rights reserved.

Analyzing the Effects of Climate Change on Sea Surface Temperature in Monitoring Coral Reef Health in the Florida Keys Using Sea Surface Temperature Data

NASA Technical Reports Server (NTRS)

Jones, Jason; Burbank, Renane; Billiot, Amanda; Schultz, Logan

2011-01-01

This presentation discusses use of 4 kilometer satellite-based sea surface temperature (SST) data to monitor and assess coral reef areas of the Florida Keys. There are growing concerns about the impacts of climate change on coral reef systems throughout the world. Satellite remote sensing technology is being used for monitoring coral reef areas with the goal of understanding the climatic and oceanic changes that can lead to coral bleaching events. Elevated SST is a well-documented cause of coral bleaching events. Some coral monitoring studies have used 50 km data from the Advanced Very High Resolution Radiometer (AVHRR) to study the relationships of sea surface temperature anomalies to bleaching events. In partnership with NOAA's Office of National Marine Sanctuaries and the University of South Florida's Institute for Marine Remote Sensing, this project utilized higher resolution SST data from the Terra's Moderate Resolution Imaging Spectroradiometer (MODIS) and AVHRR. SST data for 2000-2010 was employed to compute sea surface temperature anomalies within the study area. The 4 km SST anomaly products enabled visualization of SST levels for known coral bleaching events from 2000-2010.

Sensitivity of Offshore Surface Fluxes and Sea Breezes to the Spatial Distribution of Sea-Surface Temperature

NASA Astrophysics Data System (ADS)

Lombardo, Kelly; Sinsky, Eric; Edson, James; Whitney, Michael M.; Jia, Yan

2018-03-01

A series of numerical sensitivity experiments is performed to quantify the impact of sea-surface temperature (SST) distribution on offshore surface fluxes and simulated sea-breeze dynamics. The SST simulations of two mid-latitude sea-breeze events over coastal New England are performed using a spatially-uniform SST, as well as spatially-varying SST datasets of 32- and 1-km horizontal resolutions. Offshore surface heat and buoyancy fluxes vary in response to the SST distribution. Local sea-breeze circulations are relatively insensitive, with minimal differences in vertical structure and propagation speed among the experiments. The largest thermal perturbations are confined to the lowest 10% of the sea-breeze column due to the relatively high stability of the mid-Atlantic marine atmospheric boundary layer (ABL) suppressing vertical mixing, resulting in the depth of the marine layer remaining unchanged. Minimal impacts on the column-averaged virtual potential temperature and sea-breeze depth translates to small changes in sea-breeze propagation speed. This indicates that the use of datasets with a fine-scale SST may not produce more accurate sea-breeze simulations in highly stable marine ABL regimes, though may prove more beneficial in less stable sub-tropical environments.

Assessing the applicability of organic SST proxies in an upwelling region (Arabian Sea)

NASA Astrophysics Data System (ADS)

Lattaud, J.; van Erk, M. R.; Reichart, G. J.; Schulz, H.; S Sinninghe Damsté, J.; Schouten, S.

2017-12-01

Multiple organic proxies have the potential to reconstruct sea surface temperature (SST), but their behaviour is not completely understood within upwelling areas. This holds in particular for the recently developed Long chain Diol Index1 (LDI), based on the ratio of 1,15-diols over 1,13-diols, both likely produced by Eustigmatophytes. We tested the applicability of the LDI by comparing it to the more established temperature proxies TEX86 and Uk¢37 in a sediment core (spanning the last 76 ky) from the northern Arabian Sea and in surface sediments (Pakistan margin). In the surface sediments, Uk¢37- and LDI-SSTs agree well with annual mean SST, but the TEX86-SST substantially overestimates SST. A better agreement is observed, when the 0-200 m TEX86 calibration is used, suggesting TEX86 reflects subsurface temperatures. The results from the sediment core reveal that the SST records differ in absolute reconstructed temperature and show different patterns. TEX86 subsurface temperatures show a continuous increase toward the Holocene and no stadial/interstadial differences, while the LDI-SST is constant around 26°C with the exception of some short-term cooling events during periods of intensified upwelling. The Uk¢37-SST varies between 22 and 26°C and follows the global δ18Obenthic foram curve and thus is representing mean annual SST in this region3. During stadials, the reduced monsoon and low upwelling intensity resulted in warming of the subsurface waters2, as indicated by higher TEX86 temperatures, while global cooling led to colder surface waters as reflected in lower Uk¢37-SSTs, thus reducing the thermal gradient in the water column2. During the interstadials, which are periods of strong upwelling3, there is a high proportion of 1,14-diols (>40%). This probably disturbs the LDI-SST signal because the diatoms that produce the 1,14-diols are also generating small amounts of the 1,13-diols4. This suggests that care has to be taken in applying the LDI in upwelling regions. References 1Rampen et al., 2012 2Tierney et al., 2015 3Emeis et al., 1995 4Rampen et al., 2007

Role of Soluble ST2 Levels and Beta-Blockers Dosage on Cardiovascular Events of Patients with Unselected ST-Segment Elevation Myocardial Infarction

PubMed Central

Huang, Wei-Ping; Zheng, Xuan; He, Lei; Su, Xi; Liu, Cheng-Wei; Wu, Ming-Xiang

2018-01-01

Background: Serum soluble ST2 (sST2) levels are elevated early after acute myocardial infarction and are related to adverse left ventricular (LV) remodeling and cardiovascular outcomes in ST-segment elevation myocardial infarction (STEMI). Beta-blockers (BB) have been shown to improve LV remodeling and survival. However, the relationship between sST2, final therapeutic BB dose, and cardiovascular outcomes in STEMI patients remains unknown. Methods: A total of 186 STEMI patients were enrolled at the Wuhan Asia Heart Hospital between January 2015 and June 2015. All patients received standard treatment and were followed up for 1 year. Serum sST2 was measured at baseline. Patients were divided into four groups according to their baseline sST2 values (high >56 ng/ml vs. low ≤56 ng/ml) and final therapeutic BB dose (high ≥47.5 mg/d vs. low <47.5 mg/d). Cox regression analyses were performed to determine whether sST2 and BB were independent risk factors for cardiovascular events in STEMI. Results: Baseline sST2 levels were positively correlated with heart rate (r = 0.327, P = 0.002), Killip class (r = 0.408, P = 0.000), lg N-terminal prohormone B-type natriuretic peptide (r = 0.467, P = 0.000), lg troponin I (r = 0.331, P = 0.000), and lg C-reactive protein (r = 0.307, P = 0.000) and negatively correlated to systolic blood pressure (r = −0.243, P = 0.009) and LV ejection fraction (r = −0.402, P = 0.000). Patients with higher baseline sST2 concentrations who were not titrated to high-dose BB therapy (P < 0.0001) had worse outcomes. Baseline high sST2 (hazard ratio [HR]: 2.653; 95% confidence interval [CI]: 1.201–8.929; P = 0.041) and final low BB dosage (HR: 1.904; 95% CI, 1.084–3.053; P = 0.035) were independent predictors of cardiovascular events in STEMI. Conclusions: High baseline sST2 levels and final low BB dosage predicted cardiovascular events in STEMI. Hence, sST2 may be a useful biomarker in cardiac pathophysiology. PMID:29786039

Latitudinal and Longitudinal Basin-scale Surface Salinity Contrasts and Freshwater Transport by Ocean Thermohaline Circulation

NASA Astrophysics Data System (ADS)

Seidov, D.; Haupt, B. J.

2003-12-01

The role of sea surface salinity (SSS) contrasts in maintaining vigorous global ocean thermohaline circulation (THC) is revisited. Relative importance of different generalizations of sea surface conditions in climate studies is explored. In numerical experiments using an ocean general circulation model, we have aggregated the observed sea surface temperature (SST) and SSS in several different ways: we used observed unchanged SST with SSS taken as constant (34.25 psu) everywhere; SST unchanged, and SSS zonally averaged globally, i.e., in the whole World Ocean; SST averaged globally, and SSS unchanged; SST zonally averaged globally and SSS zonally averaged basin-wide in individual basins, i.e., in the Atlantic, Indian, Pacific, and Southern Oceans separately; and, finally, both SST and SSS zonally averaged in individual basins. Global zonal averaging removes all longitudinal differences in sea surface climatology among ocean basins. However, latitudinal profiles of zonally averaged parameters preserve the main character of large-scale equator-to-pole sea surface variability. Basin-wide zonal averaging does an even better job of preserving latitudinal distributions within each basin. The results of the experiments could hardly be anticipated a priory. Surprisingly, SST could be used as a 2-D field, or as a zonally-averaged field without much difference in the THC dynamics. Moreover, SST could be averaged either globally, or basin-wide, and it also did not change the overall character of THC. At the same time, THC responded vigorously to how the SSS has been changed. It appeared that the THC structure with the globally averaged SST and basin-wide averaged SSS was very close to the one obtained in the control run (control run operates with 2-D observed SST and SSS). Our main conclusion is that ocean-wide inter-basin sea surface salinity contrasts serve as the major controlling element in global thermohaline circulation. Thermal inter-basin contrasts, as well as longitudinal variation in SSS, are less important than latitudinal thermal gradients and inter-basin salinity contrasts. Details of SSS also decrease in importance as soon as its inter-basin contrasts are retained. This is especially important for paleoclimate and future climate simulations, as only the large-scale inter-basin contrasts of the sea surface conditions really matter.

Impact of SST on heavy rainfall events on eastern Adriatic during SOP1 of HyMeX

NASA Astrophysics Data System (ADS)

Ivatek-Šahdan, Stjepan; Stanešić, Antonio; Tudor, Martina; Odak Plenković, Iris; Janeković, Ivica

2018-02-01

The season of late summer and autumn is favourable for intensive precipitation events (IPE) in the central Mediterranean. During that period the sea surface is warm and contributes to warming and moistening of the lowest portion of the atmosphere, particularly the planetary boundary layer (PBL). Adriatic sea is surrounded by mountains and the area often receives substantial amounts of precipitation in short time (24 h). The IPEs are a consequence of convection triggered by topography acting on the southerly flow that has brought the unstable air to the coastline. Improvement in prediction of high impact weather events is one of the goals of The Hydrological cycle in the Mediterranean eXperiment (HyMeX). This study examines how precipitation patterns change in response to different SST forcing. We focus on the IPEs that occurred on the eastern Adriatic coast during the first HyMeX Special observing period (SOP1, 6 September to 5 November 2012). The operational forecast model ALADIN uses the same SST as the global meteorological model (ARPEGE from Meteo France), as well as the forecast lateral boundary conditions (LBCs). First we assess the SST used by the operational atmospheric model ALADIN and compare it to the in situ measurements, ROMS ocean model, OSTIA and MUR analyses. Results of this assessment show that SST in the eastern Adriatic was overestimated by up to 10 K during HyMeX SOP1 period. Then we examine the sensitivity of 8 km and 2 km resolution forecasts of IPEs to the changes in the SST during whole SOP1 with special attention to the intensive precipitation event in Rijeka. Forecast runs in both resolutions are performed for the whole SOP1 using different SST fields prescribed at initial time and kept constant during the model forecast. Categorical verification of 24 h accumulated precipitation did not show substantial improvement in verification scores when more realistic SST was used. Furthermore, the results show that the impact of introducing improved SST in the analysis on the precipitation forecast varies for different cases. There is generally a larger sensitivity to the SST in high resolution than in the lower one, although the forecast period of the latter is longer.

The influence of sea surface temperature on the intensity and associated storm surge of tropical cyclone Yasi: a sensitivity study

NASA Astrophysics Data System (ADS)

Lavender, Sally L.; Hoeke, Ron K.; Abbs, Deborah J.

2018-03-01

Tropical cyclones (TCs) result in widespread damage associated with strong winds, heavy rainfall and storm surge. TC Yasi was one of the most powerful TCs to impact the Queensland coast since records began. Prior to Yasi, the SSTs in the Coral Sea were higher than average by 1-2 °C, primarily due to the 2010/2011 La Niña event. In this study, a conceptually simple idealised sensitivity analysis is performed using a high-resolution regional model to gain insight into the influence of SST on the track, size, intensity and associated rainfall of TC Yasi. A set of nine simulations with uniform SST anomalies of between -4 and 4 °C applied to the observed SSTs are analysed. The resulting surface winds and pressure are used to force a barotropic storm surge model to examine the influence of SST on the associated storm surge of TC Yasi. An increase in SST results in an increase in intensity, precipitation and integrated kinetic energy of the storm; however, there is little influence on track prior to landfall. In addition to an increase in precipitation, there is a change in the spatial distribution of precipitation as the SST increases. Decreases in SSTs result in an increase in the radius of maximum winds due to an increase in the asymmetry of the storm, although the radius of gale-force winds decreases. These changes in the TC characteristics also lead to changes in the associated storm surge. Generally, cooler (warmer) SSTs lead to reduced (enhanced) maximum storm surges. However, the increase in surge reaches a maximum with an increase in SST of 2 °C. Any further increase in SST does not affect the maximum surge but the total area and duration of the simulated surge increases with increasing upper ocean temperatures. A large decrease in maximum storm surge height occurs when a negative SST anomaly is applied, suggesting if TC Yasi had occurred during non-La Niña conditions the associated storm surge may have been greatly diminished, with a decrease in storm surge height of over 3 m when the SST is reduced by 2 °C. In summary, increases in SST lead to an increase in the potential destructiveness of TCs with regard to intensity, precipitation and storm surge, although this relationship is not linear.

Sho-saiko-to, a traditional herbal medicine, regulates gene expression and biological function by way of microRNAs in primary mouse hepatocytes

PubMed Central

2014-01-01

Background Sho-saiko-to (SST) (also known as so-shi-ho-tang or xiao-chai-hu-tang) has been widely prescribed for chronic liver diseases in traditional Oriental medicine. Despite the substantial amount of clinical evidence for SST, its molecular mechanism has not been clearly identified at a genome-wide level. Methods By using a microarray, we analyzed the temporal changes of messenger RNA (mRNA) and microRNA expression in primary mouse hepatocytes after SST treatment. The pattern of genes regulated by SST was identified by using time-series microarray analysis. The biological function of genes was measured by pathway analysis. For the identification of the exact targets of the microRNAs, a permutation-based correlation method was implemented in which the temporal expression of mRNAs and microRNAs were integrated. The similarity of the promoter structure between temporally regulated genes was measured by analyzing the transcription factor binding sites in the promoter region. Results The SST-regulated gene expression had two major patterns: (1) a temporally up-regulated pattern (463 genes) and (2) a temporally down-regulated pattern (177 genes). The integration of the genes and microRNA demonstrated that 155 genes could be the targets of microRNAs from the temporally up-regulated pattern and 19 genes could be the targets of microRNAs from the temporally down-regulated pattern. The temporally up-regulated pattern by SST was associated with signaling pathways such as the cell cycle pathway, whereas the temporally down-regulated pattern included drug metabolism-related pathways and immune-related pathways. All these pathways could be possibly associated with liver regenerative activity of SST. Genes targeted by microRNA were moreover associated with different biological pathways from the genes not targeted by microRNA. An analysis of promoter similarity indicated that co-expressed genes after SST treatment were clustered into subgroups, depending on the temporal expression patterns. Conclusions We are the first to identify that SST regulates temporal gene expression by way of microRNA. MicroRNA targets and non-microRNA targets moreover have different biological roles. This functional segregation by microRNA would be critical for the elucidation of the molecular activities of SST. PMID:24410935

Sho-saiko-to, a traditional herbal medicine, regulates gene expression and biological function by way of microRNAs in primary mouse hepatocytes.

PubMed

Song, Kwang Hoon; Kim, Yun Hee; Kim, Bu-Yeo

2014-01-11

Sho-saiko-to (SST) (also known as so-shi-ho-tang or xiao-chai-hu-tang) has been widely prescribed for chronic liver diseases in traditional Oriental medicine. Despite the substantial amount of clinical evidence for SST, its molecular mechanism has not been clearly identified at a genome-wide level. By using a microarray, we analyzed the temporal changes of messenger RNA (mRNA) and microRNA expression in primary mouse hepatocytes after SST treatment. The pattern of genes regulated by SST was identified by using time-series microarray analysis. The biological function of genes was measured by pathway analysis. For the identification of the exact targets of the microRNAs, a permutation-based correlation method was implemented in which the temporal expression of mRNAs and microRNAs were integrated. The similarity of the promoter structure between temporally regulated genes was measured by analyzing the transcription factor binding sites in the promoter region. The SST-regulated gene expression had two major patterns: (1) a temporally up-regulated pattern (463 genes) and (2) a temporally down-regulated pattern (177 genes). The integration of the genes and microRNA demonstrated that 155 genes could be the targets of microRNAs from the temporally up-regulated pattern and 19 genes could be the targets of microRNAs from the temporally down-regulated pattern. The temporally up-regulated pattern by SST was associated with signaling pathways such as the cell cycle pathway, whereas the temporally down-regulated pattern included drug metabolism-related pathways and immune-related pathways. All these pathways could be possibly associated with liver regenerative activity of SST. Genes targeted by microRNA were moreover associated with different biological pathways from the genes not targeted by microRNA. An analysis of promoter similarity indicated that co-expressed genes after SST treatment were clustered into subgroups, depending on the temporal expression patterns. We are the first to identify that SST regulates temporal gene expression by way of microRNA. MicroRNA targets and non-microRNA targets moreover have different biological roles. This functional segregation by microRNA would be critical for the elucidation of the molecular activities of SST.

Characterizing surface temperature and clarity of Kuwait's seawaters using remotely sensed measurements and GIS analyses

NASA Astrophysics Data System (ADS)

Alsahli, Mohammad M. M.

Kuwait sea surface temperature (SST) and water clarity are important water characteristics that influence the entire Kuwait coastal ecosystem. The spatial and temporal distributions of these important water characteristics should be well understood to obtain a better knowledge about this productive coastal environment. The aim of this project was therefore to study the spatial and temporal distributions of: Kuwait SST using Moderate Resolution Imaging Spectroradiometer (MODIS) images collected from January 2003 to July 2007; and Kuwait Secchi Disk Depth (SDD), a water clarity measure, using Sea-viewing Wide Field-of-view Sensor (SeaWiFS) and MODIS data collected from November 1998 to October 2004 and January 2003 to June 2007, respectively. Kuwait SST was modeled based on the linear relationship between level 2 MODIS SST data and in situ SST data. MODIS SST images showed a significant relationship with in situ SST data ( r2= 0.98, n = 118, RMSE = 0.7°C). Kuwait SST images derived from MODIS data exhibited three spatial patterns of Kuwait SST across the year that were mainly attributed to the northwestern counterclockwise water circulation of the Arabian Gulf, and wind direction and intensity. The temporal variation of Kuwait SST was greatly influenced by the seasonal variation of solar intensity and air temperatures. Kuwait SDD was measured through two steps: first, computing the diffuse light attenuation coefficient at 490 nm, Kd(490), and 488 nm, Kd(488), derived from SeaWiFS and MODIS, respectively, using a semi-analytical algorithm; second, establishing two SDD models based on the empirical relationship of Kd(490) and Kd(488) with in situ SDD data. Kd(490) and Kd(488) showed a significant relationship with in situ SDD data ( r2= 0.67 and r2= 0.68, respectively). Kuwait SDD images showed distinct spatial and temporal patterns of Kuwait water clarity that were mainly attributed to three factors: the Shatt Al-Arab discharge, water circulation, and coastal currents. The SeaWiFS and MODIS data compared to in situ measurements provided a comprehensive view of the studied seawater characteristics that improved their overall estimation within Kuwait's waters. Also, the near-real-time availability of SeaWiFS and MODIS data and their highly temporal resolution make them a very advantageous tool for studying coastal environments. Thus, I recommend involving this method in monitoring Kuwait coastal environments.

Microbial and viral-like rhodopsins present in coastal marine sediments from four polar and subpolar regions

DOE Office of Scientific and Technical Information (OSTI.GOV)

López, José L.; Golemba, Marcelo; Hernández, Edgardo

Rhodopsins are broadly distributed. In this work, we analyzed 23 metagenomes corresponding to marine sediment samples from four regions that share cold climate conditions (Norway; Sweden; Argentina and Antarctica). In order to investigate the genes evolution of viral rhodopsins, an initial set of 6224 bacterial rhodopsin sequences according to COG5524 were retrieved from the 23 metagenomes. After selection by the presence of transmembrane domains and alignment, 123 viral (51) and non-viral (72) sequences (>50 amino acids) were finally included in further analysis. Viral rhodopsin genes were homologs of Phaeocystis globosa virus and Organic lake Phycodnavirus. Non-viral microbial rhodopsin genes weremore » ascribed to Bacteroidetes, Planctomycetes, Firmicutes, Actinobacteria, Cyanobacteria, Proteobacteria, Deinococcus-Thermus and Cryptophyta and Fungi. A rescreening using Blastp, using as queries the viral sequences previously described, retrieved 30 sequences (>100 amino acids). Phylogeographic analysis revealed a geographical clustering of the sequences affiliated to the viral group. This clustering was not observed for the microbial non-viral sequences. The phylogenetic reconstruction allowed us to propose the existence of a putative ancestor of viral rhodopsin genes related to Actinobacteria and Chloroflexi. This is the first report about the existence of a phylogeographic association of the viral rhodopsin sequences from marine sediments.« less

VKCDB: voltage-gated K+ channel database updated and upgraded.

PubMed

Gallin, Warren J; Boutet, Patrick A

2011-01-01

The Voltage-gated K(+) Channel DataBase (VKCDB) (http://vkcdb.biology.ualberta.ca) makes a comprehensive set of sequence data readily available for phylogenetic and comparative analysis. The current update contains 2063 entries for full-length or nearly full-length unique channel sequences from Bacteria (477), Archaea (18) and Eukaryotes (1568), an increase from 346 solely eukaryotic entries in the original release. In addition to protein sequences for channels, corresponding nucleotide sequences of the open reading frames corresponding to the amino acid sequences are now available and can be extracted in parallel with sets of protein sequences. Channels are categorized into subfamilies by phylogenetic analysis and by using hidden Markov model analyses. Although the raw database contains a number of fragmentary, duplicated, obsolete and non-channel sequences that were collected in early steps of data collection, the web interface will only return entries that have been validated as likely K(+) channels. The retrieval function of the web interface allows retrieval of entries that contain a substantial fraction of the core structural elements of VKCs, fragmentary entries, or both. The full database can be downloaded as either a MySQL dump or as an XML dump from the web site. We have now implemented automated updates at quarterly intervals.

ENSO Precipitation Variations as Seen by GPM and TRMM Radar and Passive Microwave Observations

NASA Astrophysics Data System (ADS)

Adler, R. F.; Wang, J. J.

2017-12-01

Tropical precipitation variations related to ENSO are the largest-scale such variations both spatially and in magnitude and are also the main driver of surface temperature-surface rainfall relationships on the inter-annual scale. GPM (and TRMM before it) provide a unique capability to examine these relations with both the passive and active microwave approaches. Documenting the phase and magnitudes of these relationships are important to understand these large-scale processes and to validate climate models. However, as past research by the authors have shown, the results of these relations have been different for passive vs. radar retrievals. In this study we re-examine these relations with the new GPM Version 5 products, focusing on the 2015-2016 El Nino event. The recent El Nino peaked in Dec. 2015 through Feb. 2016 with the usual patterns of precipitation anomalies across the Tropics as evident in both the GPM GMI and the Near Surface (NS) DPR (single frequency) retrievals. Integrating both the rainfall anomalies and the SST anomalies over the entire tropical ocean area (25N-25S) and comparing how they vary as a function of time on a monthly scale during the GPM era (2014-2017), the radar-based results show contrasting results to those from the GMI-based (and GPCP) results. The passive microwave data (GMI and GPCP) indicates a slope of 17%/C for the precipitation variations, while the radar NS indicates about half that ( 8%/C). This NS slope is somewhat less than calculated before with GPM's V4 data, but is larger than obtained with TRMM PR data ( 0%/C) for an earlier period during the TRMM era. Very similar results as to the DPR NS calculations are also obtained for rainfall at 2km and 4km altitude and for the Combined (DPR + GMI) product. However, at 6km altitude, although the reflectivity and rainfall magnitudes are much less than at lower altitudes, the slope of the rainfall/SST relation is 17%/C, the same as calculated with the passive microwave data. The reasons for these differences are explored and lead to conclusions that the radar-based estimates of surface rainfall with GPM have limitations (and are negatively biased) in relatively intense rainfall and this leads to an underestimation of large-scale rainfall under El Nino conditions, where more oceanic rainfall, and more intense rainfall are prevalent.

A humming retrieval system based on music fingerprint

NASA Astrophysics Data System (ADS)

Han, Xingkai; Cao, Baiyu

2011-10-01

In this paper, we proposed an improved music information retrieval method utilizing the music fingerprint. The goal of this method is to represent the music with compressed musical information. Based on the selected MIDI files, which are generated automatically as our music target database, we evaluate the accuracy, effectiveness, and efficiency of this method. In this research we not only extract the feature sequence, which can represent the file effectively, from the query and melody database, but also make it possible for retrieving the results in an innovative way. We investigate on the influence of noise to the performance of our system. As experimental result shows, the retrieval accuracy arriving at up to91% without noise is pretty well

Consistency of Estimated Global Water Cycle Variations Over the Satellite Era

NASA Technical Reports Server (NTRS)

Robertson, F. R.; Bosilovich, M. G.; Roberts, J. B.; Reichle, R. H.; Adler, R.; Ricciardulli, L.; Berg, W.; Huffman, G. J.

2013-01-01

Motivated by the question of whether recent indications of decadal climate variability and a possible "climate shift" may have affected the global water balance, we examine evaporation minus precipitation (E-P) variability integrated over the global oceans and global land from three points of view-remotely sensed retrievals / objective analyses over the oceans, reanalysis vertically-integrated moisture convergence (MFC) over land, and land surface models forced with observations-based precipitation, radiation and near-surface meteorology. Because monthly variations in area-averaged atmospheric moisture storage are small and the global integral of moisture convergence must approach zero, area-integrated E-P over ocean should essentially equal precipitation minus evapotranspiration (P-ET) over land (after adjusting for ocean and land areas). Our analysis reveals considerable uncertainty in the decadal variations of ocean evaporation when integrated to global scales. This is due to differences among datasets in 10m wind speed and near-surface atmospheric specific humidity (2m qa) used in bulk aerodynamic retrievals. Precipitation variations, all relying substantially on passive microwave retrievals over ocean, still have uncertainties in decadal variability, but not to the degree present with ocean evaporation estimates. Reanalysis MFC and P-ET over land from several observationally forced diagnostic and land surface models agree best on interannual variations. However, upward MFC (i.e. P-ET) reanalysis trends are likely related in part to observing system changes affecting atmospheric assimilation models. While some evidence for a low-frequency E-P maximum near 2000 is found, consistent with a recent apparent pause in sea-surface temperature (SST) rise, uncertainties in the datasets used here remain significant. Prospects for further reducing uncertainties are discussed. The results are interpreted in the context of recent climate variability (Pacific Decadal Oscillation, Atlantic Meridional Overturning), and efforts to distinguish these modes from longer-term trends.

Emerging role of Indian ocean on Indian northeast monsoon

NASA Astrophysics Data System (ADS)

Yadav, Ramesh Kumar

2013-07-01

This study examines the emerging role of Indian Ocean sea surface temperature (SST) on the inter-annual variability (IAV) of Indian north-east monsoon rainfall (NEMR). The IAV of NEMR is associated with the warm SST anomaly over east Bay-of-Bengal (BoB) (88.5oE-98.5oE; 8.5oN-15.5oN) and cool SST anomaly over east equatorial Indian Ocean (80.5oE-103.5oE; 6.5oS-3.5oN). The gradient of SST between these boxes (i.e. northern box minus southern box) shows strong and robust association with the Indian NEMR variability in the recent decades. For establishing the teleconnections, SST, mean sea level pressure, North Indian Ocean tropical storm track, and circulation data have been used. The study reveals that during the positive SST gradient years, the inter-tropical convergence zone (ITCZ) shifts northwards over the East Indian Ocean. The tropical depressions, storms and cyclones formed in the North Indian Ocean moves more zonally and strike the southern peninsular India and hence excess NEMR. While, during the negative SST gradient years, the ITCZ shifts southwards over the Indian Ocean. The tropical depressions, storms and cyclones formed in the North Indian Ocean moves more northwestward direction and after crossing 15oN latitude re-curve to north-east direction towards head BoB and misses southern peninsular India and hence, deficient NEMR.

[111In-DOTA]LTT-SS28, a first pansomatostatin radioligand for in vivo targeting of somatostatin receptor-positive tumors.

PubMed

Maina, Theodosia; Cescato, Renzo; Waser, Beatrice; Tatsi, Aikaterini; Kaloudi, Aikaterini; Krenning, Eric P; de Jong, Marion; Nock, Berthold A; Reubi, Jean Claude

2014-08-14

Radiolabeled pansomatostatin-like analogues are expected to enhance the diagnostic sensitivity and to expand the clinical indications of currently applied sst2-specific radioligands. In this study, we present the somatostatin mimic [DOTA]LTT-SS28 {[(DOTA)Ser1,Leu8,D-Trp22,Tyr25]SS28} and its 111In radioligand. [DOTA]LTT-SS28 exhibited a pansomatostatin-like profile binding with high affinity to all five hsst1-hsst5 subtypes (IC50 values in the lower nanomolar range). Furthermore, [DOTA]LTT-SS28 behaved as an agonist at hsst2, hsst3, and hsst5, efficiently stimulating internalization of the three receptor subtypes. Radioligand [111In-DOTA]LTT-SS28 showed good stability in the mouse bloodstream. It displayed strong and specific uptake in AR42J tumors 4 h postinjection (9.3±1.6% ID/g vs 0.3±0.0% ID/g during sst2 blockade) in mice. Significant and specific uptake was also observed in HEK293-hsst2-, HEK293-hsst3-, and HEK293-hsst5-expressing tumors (4.43±1.5, 4.88±1.1, and <3% ID/g, respectively, with values of <0.5% ID/g during receptor blockade). In conclusion, the somatostatin mimic [111In-DOTA]LTT-SS28 specifically localizes in sst2-, sst3-, and sst5-expressing xenografts in mice showing promise for multi-sst1-sst5 targeted tumor imaging.

Atmospheric Response to Zonal Variations in Midlatitude SST: Transient and Stationary Eddies and Their Feedback(.

NASA Astrophysics Data System (ADS)

Inatsu, Masaru; Mukougawa, Hitoshi; Xie, Shang-Ping

2003-10-01

Midwinter storm track response to zonal variations in midlatitude sea surface temperatures (SSTs) has been investigated using an atmospheric general circulation model under aquaplanet and perpetual-January conditions. Zonal wavenumber-1 SST variations with a meridionally confined structure are placed at various latitudes. Having these SST variations centered at 30°N leads to a zonally localized storm track, while the storm track becomes nearly zonally uniform when the same SST forcing is moved farther north at 40° and 50°N. Large (small) baroclinic energy conversion north of the warm (cold) SST anomaly near the axis of the storm track (near 40°N) is responsible for the large (small) storm growth. The equatorward transfer of eddy kinetic energy by the ageostrophic motion and the mechanical damping are important to diminish the storm track activity in the zonal direction.Significant stationary eddies form in the upper troposphere, with a ridge (trough) northeast of the warm (cold) SST anomaly at 30°N. Heat and vorticity budget analyses indicate that zonally localized condensational heating in the storm track is the major cause for these stationary eddies, which in turn exert a positive feedback to maintain the localized storm track by strengthening the vertical shear near the surface. These results indicate an active role of synoptic eddies in inducing deep, tropospheric-scale response to midlatitude SST variations. Finally, the application of the model results to the real atmosphere is discussed.

Analysis of purified glabra3-shapeshifter trichomes reveals a role for NOECK in regulating early trichome morphogenic events.

PubMed

Gilding, Edward K; Marks, M David

2010-10-01

Transcriptome analysis using the Affymetrix ATH1 platform has been completed on purified trichomes from the gl3-sst mutant. These trichomes display immature features, such as glassy cell walls and blunted branches. The gl3-sst trichome transcriptome was greatly enriched for genes involved in lipid biosynthesis, including those mediating the synthesis of fatty acids and wax. In addition, gl3-sst trichomes displayed reduced expression of the R3 MYBs TRY and CPC, which normally function to limit trichome development. The expression of the MIXTA-like MYB gene NOK was elevated. Members of the MIXTA-like family promote conical cell outgrowth, and in some cases, trichome initiation in diverse plant species. In contrast, NOK limits trichome outgrowth in wild-type Arabidopsis plants. Similar to other MIXTA-like genes, NOK was required for the expansion of gl3-sst trichomes, as the gl3-sst nok double mutant trichomes were greatly reduced in size. Expression of NOK in nok mutants reduced branch formation, whereas in gl3-sst nok, NOK expression promoted trichome cell outgrowth, illustrating duel roles for NOK in both promoting and limiting trichome development. MIXTA-like genes from phylogenetically diverse plant species could substitute for NOK in both nok and gl3-sst nok backgrounds. These findings suggest that certain aspects of NOK and MIXTA-like gene function have been conserved. © 2010 The Authors. Journal compilation © 2010 Blackwell Publishing Ltd.

Numerical Simulation of Atmospheric Response to Pacific Tropical Instability Waves(.

NASA Astrophysics Data System (ADS)

Small, R. Justin; Xie, Shang-Ping; Wang, Yuqing

2003-11-01

Tropical instability waves (TIWs) are 1000-km-long waves that appear along the sea surface temperature (SST) front of the equatorial cold tongue in the eastern Pacific. The study investigates the atmospheric planetary boundary layer (PBL) response to TIW-induced SST variations using a high-resolution regional climate model. An investigation is made of the importance of pressure gradients induced by changes in air temperature and moisture, and vertical mixing, which is parameterized in the model by a 1.5-level turbulence closure scheme. Significant turbulent flux anomalies of sensible and latent heat are caused by changes in the air sea temperature and moisture differences induced by the TIWs. Horizontal advection leads to the occurrence of the air temperature and moisture extrema downwind of the SST extrema. High and low hydrostatic surface pressures are then located downwind of the cold and warm SST patches, respectively. The maximum and minimum wind speeds occur in phase with SST, and a thermally direct circulation is created. The momentum budget indicates that pressure gradient, vertical mixing, and horizontal advection dominate. In the PBL the vertical mixing acts as a frictional drag on the pressure-gradient-driven winds. Over warm SST the mixed layer deepens relative to over cold SST. The model simulations of the phase and amplitude of wind velocity, wind convergence, and column-integrated water vapor perturbations due to TIWs are similar to those observed from satellite and in situ data.

Sea surface temperature measurements by the along-track scanning radiometer on the ERS 1 satellite: Early results

NASA Astrophysics Data System (ADS)

Mutlow, C. T.; ZáVody, A. M.; Barton, I. J.; Llewellyn-Jones, D. T.

1994-11-01

The along-track scanning radiometer (ATSR) was launched in July 1991 on the European Space Agency's first remote sensing satellite, ERS 1. An initial analysis of ATSR data demonstrates that the sea surface temperature (SST) can be measured from space with very high accuracy. Comparison of simultaneous measurements of SST made from ATSR and from a ship-borne radiometer show that they agree to within 0.3°C. To assess data consistency, a complementary analysis of SST data from ATSR was also carried out. The ATSR global SST field was compared on a daily basis with daily SST analysis of the United Kingdom Meteorological Office (UKMO). The ATSR global field is consistently within 1.0°C of the UKMO analysis. Also, to demonstrate the benefits of along-track scanning SST determination, the ATSR SST data were compared with high-quality bulk temperature observations from drifting buoys. The likely causes of the differences between ATSR and the bulk temperature data are briefly discussed. These results provide early confidence in the quantitative benefit of ATSR's two-angle view of the Earth and its high radiometric performance and show a significant advance on the data obtained from other spaceborne sensors. It should be noted that these measurements were made at a time when the atmosphere was severely contaminated with volcanic aerosol particles, which degrade infrared measurements of the Earth's surface made from space.

Sea Surface Temperature and Seawater Oxygen Isotope Variability Recorded in a Madagascar Coral Record

NASA Astrophysics Data System (ADS)

Zinke, J.; Dullo, W. Chr; Eisenhauer, A.

2003-04-01

We analysed a 336 year coral oxygen isotope record off southwest Madagascar in the Mozambique Channel. Based on temporal variability of skeletal oxygen isotopes annual mean sea surface temperatures are reconstructed for the period from 1659 to 1995. Sr/Ca ratios were measured for selected windows with monthly resolution (1973 to 1995, 1863 to 1910, 1784 to 1809, 1688 to 1710) to validate the SST reconstructions derived from oxygen isotopes. The coral proxy data were validated against gridded SST data sets. The coral oxygen isotope record is coherent with Kaplan-SST and GISST2.3b on an interdecadal frequency of 17 years, which is the most prominent frequency band observed in this region. The Sr/Ca-SST agree well with SST observations in the validation period (1863 to 1910), whereas the d18O derived SST show largest discrepencies during this time interval. By taking into account the SST values derived from coral Sr/Ca, we were able to reconstruct d18O seawater variability. This indicates that d18O seawater variations contributed significantly to interannual and interdecadal variations in coral d18O. We propose that the local surface-ocean evaporation-precipitation balance and remote forcing by ENSO via South Equatorial Current and/or Indonesian throughflow variability may contribute to observed d18O variability. Our results indicate that coral d18O may be used to reconstruct temporal variations in the fresh water balance within the Indian Ocean on interannual to interdecadal time scales.

Shall we upgrade one-dimensional secondary settler models used in WWTP simulators? - An assessment of model structure uncertainty and its propagation.

PubMed

Plósz, Benedek Gy; De Clercq, Jeriffa; Nopens, Ingmar; Benedetti, Lorenzo; Vanrolleghem, Peter A

2011-01-01

In WWTP models, the accurate assessment of solids inventory in bioreactors equipped with solid-liquid separators, mostly described using one-dimensional (1-D) secondary settling tank (SST) models, is the most fundamental requirement of any calibration procedure. Scientific knowledge on characterising particulate organics in wastewater and on bacteria growth is well-established, whereas 1-D SST models and their impact on biomass concentration predictions are still poorly understood. A rigorous assessment of two 1-DSST models is thus presented: one based on hyperbolic (the widely used Takács-model) and one based on parabolic (the more recently presented Plósz-model) partial differential equations. The former model, using numerical approximation to yield realistic behaviour, is currently the most widely used by wastewater treatment process modellers. The latter is a convection-dispersion model that is solved in a numerically sound way. First, the explicit dispersion in the convection-dispersion model and the numerical dispersion for both SST models are calculated. Second, simulation results of effluent suspended solids concentration (XTSS,Eff), sludge recirculation stream (XTSS,RAS) and sludge blanket height (SBH) are used to demonstrate the distinct behaviour of the models. A thorough scenario analysis is carried out using SST feed flow rate, solids concentration, and overflow rate as degrees of freedom, spanning a broad loading spectrum. A comparison between the measurements and the simulation results demonstrates a considerably improved 1-D model realism using the convection-dispersion model in terms of SBH, XTSS,RAS and XTSS,Eff. Third, to assess the propagation of uncertainty derived from settler model structure to the biokinetic model, the impact of the SST model as sub-model in a plant-wide model on the general model performance is evaluated. A long-term simulation of a bulking event is conducted that spans temperature evolution throughout a summer/winter sequence. The model prediction in terms of nitrogen removal, solids inventory in the bioreactors and solids retention time as a function of the solids settling behaviour is investigated. It is found that the settler behaviour, simulated by the hyperbolic model, can introduce significant errors into the approximation of the solids retention time and thus solids inventory of the system. We demonstrate that these impacts can potentially cause deterioration of the predictive power of the biokinetic model, evidenced by an evaluation of the system's nitrogen removal efficiency. The convection-dispersion model exhibits superior behaviour, and the use of this type of model thus is highly recommended, especially bearing in mind future challenges, e.g., the explicit representation of uncertainty in WWTP models.

The climate of the Common Era off the Iberian Peninsula

NASA Astrophysics Data System (ADS)

Abrantes, Fátima; Rodrigues, Teresa; Rufino, Marta; Salgueiro, Emília; Oliveira, Dulce; Gomes, Sandra; Oliveira, Paulo; Costa, Ana; Mil-Homens, Mário; Drago, Teresa; Naughton, Filipa

2017-12-01

The Mediterranean region is a climate hot spot, sensitive not only to global warming but also to water availability. In this work we document major temperature and precipitation changes in the Iberian Peninsula and margin during the last 2000 years and propose an interplay of the North Atlantic internal variability with the three atmospheric circulation modes (ACMs), (North Atlantic Oscillation (NAO), east atlantic (EA) and Scandinavia (SCAND)) to explain the detected climate variability. We present reconstructions of sea surface temperature (SST derived from alkenones) and on-land precipitation (estimated from higher plant n-alkanes and pollen data) in sedimentary sequences recovered along the Iberian Margin between the south of Portugal (Algarve) and the northwest of Spain (Galiza) (36 to 42° N). A clear long-term cooling trend, from 0 CE to the beginning of the 20th century, emerges in all SST records and is considered to be a reflection of the decrease in the Northern Hemisphere summer insolation that began after the Holocene optimum. Multi-decadal/centennial SST variability follows other records from Spain, Europe and the Northern Hemisphere. Warm SSTs throughout the first 1300 years encompass the Roman period (RP), the Dark Ages (DA) and the Medieval Climate Anomaly (MCA). A cooling initiated at 1300 CE leads to 4 centuries of colder SSTs contemporary with the Little Ice Age (LIA), while a climate warming at 1800 CE marks the beginning of the modern/Industrial Era. Novel results include two distinct phases in the MCA: an early period (900-1100 years) characterized by intense precipitation/flooding and warm winters but a cooler spring-fall season attributed to the interplay of internal oceanic variability with a positive phase in the three modes of atmospheric circulation (NAO, EA and SCAND). The late MCA is marked by cooler and relatively drier winters and a warmer spring-fall season consistent with a shift to a negative mode of the SCAND. The Industrial Era reveals a clear difference between the NW Iberia and the Algarve records. While off NW Iberia variability is low, the Algarve shows large-amplitude decadal variability with an inverse relationship between SST and river input. Such conditions suggest a shift in the EA mode, from negative between 1900 and 1970 CE to positive after 1970, while NAO and SCAND remain in a positive phase. The particularly noticeable rise in SST at the Algarve site by the mid-20th century (±1970), provides evidence for a regional response to the ongoing climate warming. The reported findings have implications for decadal-scale predictions of future climate change in the Iberian Peninsula.

Seasonal Ice Zone Reconnaissance Surveys Coordination

DTIC Science & Technology

2014-09-30

profiler (AXCP) ocean velocity shear (Morison), UpTempO buoy measurements of sea surface temperature (SST), sea level atmospheric pressure ( SLP ), and...and prediction…. Steele UpTempO buoy drops for SLP , SST, SSS, & surface velocity Visible and Thermal Images of the SIZ from the Coast Guard...Expendable CTD, AXCP= Air Expendable Current Profiler, SLP = Sea Level atmospheric Pressure, SST= Seas Surface Temperature, A/C= aircraft, SIC=Sea Ice

Sea surface temperature variability in the Gulf of Mexico from 1734-2008 CE: A reconstruction using cross-dated Sr/Ca records from the coral Siderastrea siderea

NASA Astrophysics Data System (ADS)

DeLong, K. L.; Flannery, J. A.; Quinn, T. M.; Maupin, C. R.; Lin, K.; Shen, C.

2013-12-01

Sea surface temperature (SST) variability in the Gulf of Mexico impacts climate in Central and North America because the Gulf is a major source of moisture and is a source region for the Gulf Stream, which transports ocean heat northward. Here we use skeletal variations in coral Sr/Ca from three Siderastrea siderea coral colonies within the Dry Tortugas National Park in the southeastern Gulf of Mexico (24°42'N, 82°48'W) to develop 274 years of monthly-resolved SST variations. The cross-dated chronology, determined by counting annual density bands and correlating Sr/Ca variations, is verified by four replicated high precision 230Th dates (×1.7-37 years, 2σ). Calibration and verification of our replicated coral Sr/Ca-SST reconstruction with Dry Tortugas SST (r = 0.98 and 0.55 for monthly and 36-month smoothed, respectively; 1992-2008 CE) and Key West, Florida surface air temperature (1895-2008 CE) measurements reveals similar covariance (r = 0.96 and 0.56 for monthly and 36-month smoothed, respectively). The absolute coral SST reconstruction is consistent with SST recorded at the Dry Tortugas lighthouse from 1879-1907 CE indicating that this coral Sr/Ca-SST relationship is stable on centennial time scales. The Sr/Ca-SST reconstruction reveals ~2.0°C interannual variability, ~1.5°C decadal fluctuations, and a 0.7°C warming trend for the past 274 years. Secular variability in our reconstruction is similar to approximately decadally resolved planktic foraminifer Mg/Ca records from the northern Gulf of Mexico. The coral Sr/Ca-SST reconstruction reveals colder decades (~1.5°C) suggesting a reduction in moisture and ocean heat flux from the Gulf of Mexico. We find winter extremes are more variable than summer extremes (×2.2°C vs. ×1.6°C, 2σ) with a stronger warming trend (1°C) in the summers suggesting continued warming may increase coral bleaching.

A reconstruction of sea surface temperature variability in the southeastern Gulf of Mexico from 1734 to 2008 C.E. using cross-dated Sr/Ca records from the coral Siderastrea siderea

USGS Publications Warehouse

DeLong, Kristine L.; Maupin, Christopher R.; Flannery, Jennifer A.; Quinn, Terrence M.; Shen, CC

2014-01-01

This study uses skeletal variations in coral Sr/Ca from three Siderastrea siderea coral colonies within the Dry Tortugas National Park in the southeastern Gulf of Mexico (24°42′N, 82°48′W) to reconstruct monthly sea surface temperature (SST) variations from 1734 to 2008 Common Era (C.E.). Calibration and verification of the replicated coral Sr/Ca-SST reconstruction with local, regional, and historical temperature records reveals that this proxy-temperature relationship is stable back to 1879 C.E. The coral SST reconstruction contains robust interannual (~2.0°C) and multidecadal variability (~1.5°C) for the past 274 years, the latter of which does not covary with the Atlantic Multidecadal Oscillation. Winter SST extremes are more variable than summer SST extremes (±2.2°C versus ±1.6°C, 2σ) suggesting that Loop Current transport in the winter dominates variability on interannual and longer time scales. Summer SST maxima are increasing (+1.0°C for 274 years, σMC = ±0.5°C, 2σ), whereas winter SST minima contain no significant trend. Colder decades (~1.5°C) during the Little Ice Age (LIA) do not coincide with decades of sunspot minima. The coral SST reconstruction contains similar variability to temperature reconstructions from the northern Gulf of Mexico (planktic foraminifer Mg/Ca) and the Caribbean Sea (coral Sr/Ca) suggesting areal reductions in the Western Hemisphere Warm Pool during the LIA. Mean summer coral SST extremes post-1985 C.E. (29.9°C) exceeds the long-term summer average (29.2°C for 1734–2008 C.E.), yet the warming trend after 1985 C.E. (0.04°C for 24 years, σMC = ±0.5, 2σ) is not significant, whereas Caribbean coral Sr/Ca studies contain a warming trend for this interval.

The relative importance of ENSO and tropical Atlantic sea surface temperature anomalies for seasonal precipitation over South America: a numerical study

NASA Astrophysics Data System (ADS)

Pezzi, L. P.; Cavalcanti, I. F. A.

The role of tropical Atlantic sea surface temperature (SST) anomalies during ENSO episodes over northeast Brazil (Nordeste) is investigated using the CPTEC/COLA Atmospheric General Circulation Model (AGCM). Four sets of integrations are performed using SST in El Niño and La Niña (ENSO) episodes, changing the SST of the Atlantic Ocean. A positive dipole (SST higher than normal in the tropical North Atlantic and below normal in the tropical South Atlantic) and a negative dipole (opposite conditions), are set as the boundary conditions of SST in the Atlantic Ocean. The four experiments are performed using El Niño or La Niña SST in all oceans, except in the tropical Atlantic where the two phases of the SST dipole are applied. Five initial conditions were integrated in each case in order to obtain four ensemble results. The positive SST dipole over the tropical Atlantic Ocean and El Niño conditions over the Pacific Ocean resulted in dry conditions over the Nordeste. When the negative dipole and El Niño conditions over the Pacific Ocean were applied, the results showed precipitation above normal over the north of Nordeste. When La Niña conditions over Pacific Ocean were tested together with a negative dipole, positive precipitation anomalies occurred over the whole Nordeste. Using the positive dipole over the tropical Atlantic, the precipitation over Nordeste was below average. During La Niña episodes, the Atlantic Ocean conditions have a larger effect on the precipitation of Nordeste than the Pacific Ocean. In El Niño conditions, only the north region of Nordeste is affected by the Atlantic SST. Other tropical areas of South America show a change only in the intensity of anomalies. Central and southeast regions of South America are affected by the Atlantic conditions only during La Niña conditions, whereas during El Niño these regions are influenced only by conditions in the Pacific Ocean.

Sea Surface Temperatures in the Indo-Pacific Warm Pool During the Early Pliocene Warm Period

NASA Astrophysics Data System (ADS)

Dekens, P. S.; Ravelo, A. C.; Griffith, E. M.

2010-12-01

The Indo-Pacific warm pool (IPWP) plays an important role in both regional and global climate, but the response of this region to anthropogenic climate change is not well understood. While the early Pliocene is not a perfect analogue for anthropogenic climate change, it is the most recent time in Earth history when global temperatures were warmer than they are today for a sustained period of time. SST in the eastern equatorial Pacific was 2-4○C warmer in the early Pliocene compared to today. A Mg/Ca SST at ODP site 806 in the western equatorial Pacific indicates that SST were stable through the last 5Ma (Wara et al., 2005). We generated a G. sacculifer Mg/Ca record in the Indian Ocean (ODP sit 758) for the last 5 Ma, which also shows that IPWP SST has remained relatively stable through the last 5 Ma and was not warmer in the early Pliocene compared today. A recent paper suggests that the Mg/Ca of seawater may have varied through the last 5 Ma and significantly affected Mg/Ca SST estimates (Medina-Elizalde et al., 2008). However, there is considerable uncertainty in the estimates of seawater Mg/Ca variations through time. We will present a detailed examination of these uncertainties to examine the possible range of seawater Mg/Ca through the last 5 Ma. Due to the lack of culturing work of foraminifera at different Mg/Ca ratios in the growth water there is also uncertainty in how changes in seawater Mg/Ca will affect the temperatures signal in the proxy. We will explore how uncertainties in the record of seawater Mg/Ca variations through time and its effect on the Mg/Ca SST proxy potentially influence the interpretation of the Mg/Ca SST records at ODP sites 806 and 758 in the IPWP, and ODP site 847 in the eastern equatorial Pacific. We will also explore how adjustment of the Mg/Ca SST estimates (due to reconstructed Mg/Ca seawater variations) affects the δ18O of water when adjusted Mg/Ca SST estimates are paired with δ18O measurements of the same samples.

The components of somatostatin and ghrelin systems are altered in neuroendocrine lung carcinoids and associated to clinical-histological features.

PubMed

Herrera-Martínez, Aura D; Gahete, Manuel D; Sánchez-Sánchez, Rafael; Salas, Rosa Ortega; Serrano-Blanch, Raquel; Salvatierra, Ángel; Hofland, Leo J; Luque, Raúl M; Gálvez-Moreno, María A; Castaño, Justo P

2017-07-01

Lung carcinoids (LCs) are rare tumors that comprise 1-5% of lung malignancies but represent 20-30% of neuroendocrine tumors. Their incidence is progressively increasing and a better characterization of these tumors is required. Alterations in somatostatin (SST)/cortistatin (CORT) and ghrelin systems have been associated to development/progression of various endocrine-related cancers, wherein they may become useful diagnostic, prognostic and therapeutic biomarkers. We aimed to evaluate the expression levels of ghrelin and SST/CORT system components in LCs, as well as to explore their putative relationship with histological/clinical characteristics. An observational retrospective study was performed; 75 LC patients with clinical/histological characteristics were included. Samples from 46 patients were processed to isolate mRNA from tumor and adjacent non-tumor region, and the expression levels of SST/CORT and ghrelin systems components, determined by quantitative-PCR, were compared to those of 7 normal lung tissues. Patient cohort was characterized by mean age 53±15 years, 48% males, 34% with tobacco exposure; 71.4/28.6% typical/atypical carcinoids, 21.7% incidental tumors, 4.3% functioning tumors, 17.7% with metastasis. SST/CORT and ghrelin system components were expressed at variable levels in a high proportion of tumors, as well as in adjacent non-tumor tissues, while a lower proportion of normal lung samples also expressed these molecules. A gradation was observed from normal non-neoplastic lung tissues, non-tumor adjacent tissue and LCs, being SST, sst4, sst5, GHS-R1a and GHS-R1b overexpressed in tumor tissue compared to normal tissue. Importantly, several SST/CORT and ghrelin system components displayed significant correlations with relevant clinical parameters, such as necrosis, peritumoral and vascular invasion, or metastasis. Altogether, these data reveal a prominent, widespread expression of key SST/CORT/ghrelin system components in LCs, where they display clinical-histological correlations, which could provide novel, valuable markers for NET patient management. Copyright © 2017 Elsevier B.V. All rights reserved.

Remote sensing measurements of sea surface temperature as an indicator of Vibrio parahaemolyticus in oyster meat and human illnesses.

PubMed

Konrad, Stephanie; Paduraru, Peggy; Romero-Barrios, Pablo; Henderson, Sarah B; Galanis, Eleni

2017-08-31

Vibrio parahaemolyticus (Vp) is a naturally occurring bacterium found in marine environments worldwide. It can cause gastrointestinal illness in humans, primarily through raw oyster consumption. Water temperatures, and potentially other environmental factors, play an important role in the growth and proliferation of Vp in the environment. Quantifying the relationships between environmental variables and indicators or incidence of Vp illness is valuable for public health surveillance to inform and enable suitable preventative measures. This study aimed to assess the relationship between environmental parameters and Vp in British Columbia (BC), Canada. The study used Vp counts in oyster meat from 2002-2015 and laboratory confirmed Vp illnesses from 2011-2015 for the province of BC. The data were matched to environmental parameters from publicly available sources, including remote sensing measurements of nighttime sea surface temperature (SST) obtained from satellite readings at a spatial resolution of 1 km. Using three separate models, this paper assessed the relationship between (1) daily SST and Vp counts in oyster meat, (2) weekly mean Vp counts in oysters and weekly Vp illnesses, and (3) weekly mean SST and weekly Vp illnesses. The effects of salinity and chlorophyll a were also evaluated. Linear regression was used to quantify the relationship between SST and Vp, and piecewise regression was used to identify SST thresholds of concern. A total of 2327 oyster samples and 293 laboratory confirmed illnesses were included. In model 1, both SST and salinity were significant predictors of log(Vp) counts in oyster meat. In model 2, the mean log(Vp) count in oyster meat was a significant predictor of Vp illnesses. In model 3, weekly mean SST was a significant predictor of weekly Vp illnesses. The piecewise regression models identified a SST threshold of approximately 14 o C for both model 1 and 3, indicating increased risk of Vp in oyster meat and Vp illnesses at higher temperatures. Monitoring of SST, particularly through readily accessible remote sensing data, could serve as a warning signal for Vp and help inform the introduction and cessation of preventative or control measures.

Rapid Diagnostics of Onboard Sequences

NASA Technical Reports Server (NTRS)

Starbird, Thomas W.; Morris, John R.; Shams, Khawaja S.; Maimone, Mark W.

2012-01-01

Keeping track of sequences onboard a spacecraft is challenging. When reviewing Event Verification Records (EVRs) of sequence executions on the Mars Exploration Rover (MER), operators often found themselves wondering which version of a named sequence the EVR corresponded to. The lack of this information drastically impacts the operators diagnostic capabilities as well as their situational awareness with respect to the commands the spacecraft has executed, since the EVRs do not provide argument values or explanatory comments. Having this information immediately available can be instrumental in diagnosing critical events and can significantly enhance the overall safety of the spacecraft. This software provides auditing capability that can eliminate that uncertainty while diagnosing critical conditions. Furthermore, the Restful interface provides a simple way for sequencing tools to automatically retrieve binary compiled sequence SCMFs (Space Command Message Files) on demand. It also enables developers to change the underlying database, while maintaining the same interface to the existing applications. The logging capabilities are also beneficial to operators when they are trying to recall how they solved a similar problem many days ago: this software enables automatic recovery of SCMF and RML (Robot Markup Language) sequence files directly from the command EVRs, eliminating the need for people to find and validate the corresponding sequences. To address the lack of auditing capability for sequences onboard a spacecraft during earlier missions, extensive logging support was added on the Mars Science Laboratory (MSL) sequencing server. This server is responsible for generating all MSL binary SCMFs from RML input sequences. The sequencing server logs every SCMF it generates into a MySQL database, as well as the high-level RML file and dictionary name inputs used to create the SCMF. The SCMF is then indexed by a hash value that is automatically included in all command EVRs by the onboard flight software. Second, both the binary SCMF result and the RML input file can be retrieved simply by specifying the hash to a Restful web interface. This interface enables command line tools as well as large sophisticated programs to download the SCMF and RMLs on-demand from the database, enabling a vast array of tools to be built on top of it. One such command line tool can retrieve and display RML files, or annotate a list of EVRs by interleaving them with the original sequence commands. This software has been integrated with the MSL sequencing pipeline where it will serve sequences useful in diagnostics, debugging, and situational awareness throughout the mission.

Control of Task Sequences: What is the Role of Language?

PubMed Central

Mayr, Ulrich; Kleffner, Killian; Kikumoto, Atsushi; Redford, Melissa A.

2015-01-01

It is almost a truism that language aids serial-order control through self-cuing of upcoming sequential elements. We measured speech onset latencies as subjects performed hierarchically organized task sequences while "thinking aloud" each task label. Surprisingly, speech onset latencies and response times (RTs) were highly synchronized, a pattern that is not consistent with the hypothesis that speaking aids proactive retrieval of upcoming sequential elements during serial-order control. We also found that when instructed to do so, participants were able to speak task labels prior to presentation of response-relevant stimuli and that this substantially reduced RT signatures of retrieval—however at the cost of more sequencing errors. Thus, while proactive retrieval is possible in principle, in natural situations it seems to be prevented through a strong, "gestalt-like" tendency to synchronize speech and action. We suggest that this tendency may support context updating rather than proactive control. PMID:24274386

JICST Factual Database JICST DNA Database

NASA Astrophysics Data System (ADS)

Shirokizawa, Yoshiko; Abe, Atsushi

Japan Information Center of Science and Technology (JICST) has started the on-line service of DNA database in October 1988. This database is composed of EMBL Nucleotide Sequence Library and Genetic Sequence Data Bank. The authors outline the database system, data items and search commands. Examples of retrieval session are presented.

Genome Information Broker (GIB): data retrieval and comparative analysis system for completed microbial genomes and more

PubMed Central

Fumoto, Masaki; Miyazaki, Satoru; Sugawara, Hideaki

2002-01-01

Genome Information Broker (GIB) is a powerful tool for the study of comparative genomics. GIB allows users to retrieve and display partial and/or whole genome sequences together with the relevant biological annotation. GIB has accumulated all the completed microbial genome and has recently been expanded to include Arabidopsis thaliana genome data from DDBJ/EMBL/GenBank. In the near future, hundreds of genome sequences will be determined. In order to handle such huge data, we have enhanced the GIB architecture by using XML, CORBA and distributed RDBs. We introduce the new GIB here. GIB is freely accessible at http://gib.genes.nig.ac.jp/. PMID:11752256

On the Use of Ocean Dynamic Temperature for Hurricane Intensity Forecasting

DOE Office of Scientific and Technical Information (OSTI.GOV)

Balaguru, Karthik; Foltz, Gregory R.; Leung, L. Ruby

Sea surface temperature (SST) and the Tropical Cyclone Heat Potential (TCHP) are metrics used to incorporate the ocean's influence on hurricane intensification in the National Hurricane Center's Statistical Hurricane Intensity Prediction Scheme (SHIPS). While both SST and TCHP serve as useful measures of the upper-ocean heat content, they do not accurately represent ocean stratification effects. Here we show that replacing SST in the SHIPS framework with a dynamic temperature (Tdy), which accounts for the oceanic negative feedback to the hurricane's intensity arising from storm-induced vertical mixing and sea-surface cooling, improves the model performance. While the model with SST and TCHPmore » explains nearly 41% of the variance in 36-hr intensity changes, replacing SST with Tdy increases the variance explained to nearly 44%. Our results suggest that representation of the oceanic feedback, even through relatively simple formulations such as Tdy, may improve the performance of statistical hurricane intensity prediction models such as SHIPS.« less

Sea surface temperature 1871-2099 in 38 cells in the Caribbean region.

PubMed

Sheppard, Charles; Rioja-Nieto, Rodolfo

2005-09-01

Sea surface temperature (SST) data with monthly resolution are provided for 38 cells in the Caribbean Sea and Bahamas region, plus Bermuda. These series are derived from the HadISST1 data set for historical time (1871-1999) and from the HadCM3 coupled climate model for predicted SST (1950-2099). Statistical scaling of the forecast data sets are performed to produce confluent SST series according to a now established method. These SST series are available for download. High water temperatures in 1998 killed enormous amounts of corals in tropical seas, though in the Caribbean region the effects at that time appeared less marked than in the Indo-Pacific. However, SSTs are rising in accordance with world-wide trends and it has been predicted that temperature will become increasingly important in this region in the near future. Patterns of SST rise within the Caribbean region are shown, and the importance of sub-regional patterns within this biologically highly interconnected area are noted.

An equilibrium model for the coupled ocean-atmosphere boundary layer in the tropics

NASA Technical Reports Server (NTRS)

Sui, C.-H.; Lau, K.-M.; Betts, Alan K.

1991-01-01

An atmospheric convective boundary layer (CBL) model is coupled to an ocean mixed-layer (OML) model in order to study the equilibrium state of the coupled system in the tropics, particularly in the Pacific region. The equilibrium state of the coupled system is solved as a function of sea-surface temperature (SST) for a given surface wind and as a function of surface wind for a given SST. It is noted that in both cases, the depth of the CBL and OML increases and the upwelling below the OML decreases, corresponding to either increasing SST or increasing surface wind. The coupled ocean-atmosphere model is solved iteratively as a function of surface wind for a fixed upwelling and a fixed OML depth, and it is observed that SST falls with increasing wind in both cases. Realistic gradients of mixed-layer depth and upwelling are observed in experiments with surface wind and SST prescribed as a function of longitude.

Investigating the dominant corrections to the strong-stretching theory for dry polymeric brushes.

PubMed

Matsen, M W

2004-07-22

The accuracy of strong-stretching theory (SST) is examined against a detailed comparison to self-consistent field theory (SCFT) on dry polymeric brushes with thicknesses of up to approximately 17 times the natural chain extension. The comparison provides the strongest evidence to date that SST represents the exact thick-brush limit of SCFT. More importantly, it allows us to assess the effectiveness of proposed finite-stretching corrections to SST. Including the entropy of the free ends is shown to rectify the most severe inaccuracies in SST. The proximal layer proposed by Likhtman and Semenov provides another significant improvement, and we identify one further effect of similar importance for which there is not yet an accurate treatment. Furthermore, our study provides a valuable means of rejecting mistaken refinements to SST, and indeed one such example is revealed. A proper treatment of finite-stretching corrections is vital to a wide range of phenomena that depend on a small excess free energy, such as autophobic dewetting and the interaction between opposing brushes.

On the persistence and coherence of subpolar sea surface temperature and salinity anomalies associated with the Atlantic multidecadal variability

NASA Astrophysics Data System (ADS)

Zhang, Rong

2017-08-01

This study identifies key features associated with the Atlantic multidecadal variability (AMV) in both observations and a fully coupled climate model, e.g., decadal persistence of monthly mean subpolar North Atlantic (NA) sea surface temperature (SST) and salinity (SSS) anomalies, and high coherence at low frequency among subpolar NA SST/SSS, upper ocean heat/salt content, and the Atlantic Meridional Overturning Circulation (AMOC) fingerprint. These key AMV features, which can be used to distinguish the AMV mechanism, cannot be explained by the slab ocean model results or the red noise process but are consistent with the ocean dynamics mechanism. This study also shows that at low frequency, the correlation and regression between net surface heat flux and SST anomalies are key indicators of the relative roles of oceanic versus atmospheric forcing in SST anomalies. The oceanic forcing plays a dominant role in the subpolar NA SST anomalies associated with the AMV.

Merging daily sea surface temperature data from multiple satellites using a Bayesian maximum entropy method

NASA Astrophysics Data System (ADS)

Tang, Shaolei; Yang, Xiaofeng; Dong, Di; Li, Ziwei

2015-12-01

Sea surface temperature (SST) is an important variable for understanding interactions between the ocean and the atmosphere. SST fusion is crucial for acquiring SST products of high spatial resolution and coverage. This study introduces a Bayesian maximum entropy (BME) method for blending daily SSTs from multiple satellite sensors. A new spatiotemporal covariance model of an SST field is built to integrate not only single-day SSTs but also time-adjacent SSTs. In addition, AVHRR 30-year SST climatology data are introduced as soft data at the estimation points to improve the accuracy of blended results within the BME framework. The merged SSTs, with a spatial resolution of 4 km and a temporal resolution of 24 hours, are produced in the Western Pacific Ocean region to demonstrate and evaluate the proposed methodology. Comparisons with in situ drifting buoy observations show that the merged SSTs are accurate and the bias and root-mean-square errors for the comparison are 0.15°C and 0.72°C, respectively.

Mean gravity anomalies from a combination of Apollo/ATS 6 and GEOS 3/ATS 6 SST tracking campaigns. [Satellite to Satellite Tracking

NASA Technical Reports Server (NTRS)

Kahn, W. D.; Klosko, S. M.; Wells, W. T.

1982-01-01

Advances in satellite tracking data accuracy and coverage over the past 15 years have led to major improvements in global geopotential models. But the spacial resolution of the gravity field obtained solely from satellite dynamics sensed by tracking data is still of the order of 1000 km. Attention is given to an approach which will provide information regarding the fine structure of the gravity field on the basis of an application of local corrections to the global field. According to this approach, a basic satellite to satellite tracked (SST) range-rate measurement is constructed from the link between a ground station, a geosynchronous satellite (ATS 6), and a near-earth satellite (Apollo or GEOS 3). Attention is given to a mathematical model, the simulation of SST gravity anomaly estimation accuracies, a gravity anomaly estimation from GEOS 3/ATS 6 and Apollo/ATS 6 SST observations, and an evaluation of the mean gravity anomalies determined from SST.

Reexamination of the relation between depth of the Antarctic ozone hole, and equatorial QBO and SST, 1962-1992

DOE Office of Scientific and Technical Information (OSTI.GOV)

Angell, J.K.

1993-08-06

This paper reports on an examination of previous data to see if a correlation can be found between the average depth of the Antarctic ozone hole, and the equatorial quasi-biennial oscillation (QBO) and/or sea surface temperature (SST). Data from the period 1962 to 1992 is examined. The only ozone data which spans this period is the Dobson total ozone data from the South Pole. The data considered is the average from mid October through November. The 50 mb zonal wind at Singapore is taken as a measure of the QBO. The average SST in the region 12S - 2N, 180Wmore » - 90W, the El Nino region, is taken for the SST value. The objective of this correlation is for predictive purposes. There is a weak correlation to the QBO, and a much weaker correlation to the SST from this data set.« less

The absence of an Atlantic imprint on the multidecadal variability of wintertime European temperature

PubMed Central

Yamamoto, Ayako; Palter, Jaime B.

2016-01-01

Northern Hemisphere climate responds sensitively to multidecadal variability in North Atlantic sea surface temperature (SST). It is therefore surprising that an imprint of such variability is conspicuously absent in wintertime western European temperature, despite that Europe's climate is strongly influenced by its neighbouring ocean, where multidecadal variability in basin-average SST persists in all seasons. Here we trace the cause of this missing imprint to a dynamic anomaly of the atmospheric circulation that masks its thermodynamic response to SST anomalies. Specifically, differences in the pathways Lagrangian particles take to Europe during anomalous SST winters suppress the expected fluctuations in air–sea heat exchange accumulated along those trajectories. Because decadal variability in North Atlantic-average SST may be driven partly by the Atlantic Meridional Overturning Circulation (AMOC), the atmosphere's dynamical adjustment to this mode of variability may have important implications for the European wintertime temperature response to a projected twenty-first century AMOC decline. PMID:26975331

A privacy-preserving solution for compressed storage and selective retrieval of genomic data.

PubMed

Huang, Zhicong; Ayday, Erman; Lin, Huang; Aiyar, Raeka S; Molyneaux, Adam; Xu, Zhenyu; Fellay, Jacques; Steinmetz, Lars M; Hubaux, Jean-Pierre

2016-12-01

In clinical genomics, the continuous evolution of bioinformatic algorithms and sequencing platforms makes it beneficial to store patients' complete aligned genomic data in addition to variant calls relative to a reference sequence. Due to the large size of human genome sequence data files (varying from 30 GB to 200 GB depending on coverage), two major challenges facing genomics laboratories are the costs of storage and the efficiency of the initial data processing. In addition, privacy of genomic data is becoming an increasingly serious concern, yet no standard data storage solutions exist that enable compression, encryption, and selective retrieval. Here we present a privacy-preserving solution named SECRAM (Selective retrieval on Encrypted and Compressed Reference-oriented Alignment Map) for the secure storage of compressed aligned genomic data. Our solution enables selective retrieval of encrypted data and improves the efficiency of downstream analysis (e.g., variant calling). Compared with BAM, the de facto standard for storing aligned genomic data, SECRAM uses 18% less storage. Compared with CRAM, one of the most compressed nonencrypted formats (using 34% less storage than BAM), SECRAM maintains efficient compression and downstream data processing, while allowing for unprecedented levels of security in genomic data storage. Compared with previous work, the distinguishing features of SECRAM are that (1) it is position-based instead of read-based, and (2) it allows random querying of a subregion from a BAM-like file in an encrypted form. Our method thus offers a space-saving, privacy-preserving, and effective solution for the storage of clinical genomic data. © 2016 Huang et al.; Published by Cold Spring Harbor Laboratory Press.

A privacy-preserving solution for compressed storage and selective retrieval of genomic data

PubMed Central

Huang, Zhicong; Ayday, Erman; Lin, Huang; Aiyar, Raeka S.; Molyneaux, Adam; Xu, Zhenyu; Hubaux, Jean-Pierre

2016-01-01

In clinical genomics, the continuous evolution of bioinformatic algorithms and sequencing platforms makes it beneficial to store patients’ complete aligned genomic data in addition to variant calls relative to a reference sequence. Due to the large size of human genome sequence data files (varying from 30 GB to 200 GB depending on coverage), two major challenges facing genomics laboratories are the costs of storage and the efficiency of the initial data processing. In addition, privacy of genomic data is becoming an increasingly serious concern, yet no standard data storage solutions exist that enable compression, encryption, and selective retrieval. Here we present a privacy-preserving solution named SECRAM (Selective retrieval on Encrypted and Compressed Reference-oriented Alignment Map) for the secure storage of compressed aligned genomic data. Our solution enables selective retrieval of encrypted data and improves the efficiency of downstream analysis (e.g., variant calling). Compared with BAM, the de facto standard for storing aligned genomic data, SECRAM uses 18% less storage. Compared with CRAM, one of the most compressed nonencrypted formats (using 34% less storage than BAM), SECRAM maintains efficient compression and downstream data processing, while allowing for unprecedented levels of security in genomic data storage. Compared with previous work, the distinguishing features of SECRAM are that (1) it is position-based instead of read-based, and (2) it allows random querying of a subregion from a BAM-like file in an encrypted form. Our method thus offers a space-saving, privacy-preserving, and effective solution for the storage of clinical genomic data. PMID:27789525

Seasonal Ice Zone Reconnaissance Surveys Coordination and Ocean Profiles

DTIC Science & Technology

2015-09-30

Morison), UpTempO buoy measurements of sea surface temperature (SST), sea level atmospheric pressure ( SLP ), and velocity (Steele), and dropsonde...dropsondes, micro-aircraft), cloud top/base heights UpTempO buoys for understanding and prediction…. Steele UpTempO buoy drops for SLP , SST, SSS...Air Expendable Current Profiler, SLP = Sea Level atmospheric Pressure, SST= Seas Surface Temperature, A/C= aircraft, SIC=Sea Ice Concentration We

Predictive value of serum sST2 in preschool wheezers for development of asthma with high FeNO.

PubMed

Ketelaar, M E; van de Kant, K D; Dijk, F N; Klaassen, E M; Grotenboer, N S; Nawijn, M C; Dompeling, E; Koppelman, G H

2017-11-01

Wheezing is common in childhood. However, current prediction models of pediatric asthma have only modest accuracy. Novel biomarkers and definition of subphenotypes may improve asthma prediction. Interleukin-1-receptor-like-1 (IL1RL1 or ST2) is a well-replicated asthma gene and associates with eosinophilia. We investigated whether serum sST2 predicts asthma and asthma with elevated exhaled NO (FeNO), compared to the commonly used Asthma Prediction Index (API). Using logistic regression modeling, we found that serum sST2 levels in 2-3 years-old wheezers do not predict doctors' diagnosed asthma at age 6 years. Instead, sST2 predicts a subphenotype of asthma characterized by increased levels of FeNO, a marker for eosinophilic airway inflammation. Herein, sST2 improved the predictive value of the API (AUC=0.70, 95% CI 0.56-0.84), but had also significant predictive value on its own (AUC=0.65, 95% CI 0.52-0.79). Our study indicates that sST2 in preschool wheezers has predictive value for the development of eosinophilic airway inflammation in asthmatic children at school age. © 2017 EAACI and John Wiley and Sons A/S. Published by John Wiley and Sons Ltd.

Effect of ENSO on the variability of SST and Chlorophyll-a in Java Sea

NASA Astrophysics Data System (ADS)

Wirasatriya, Anindya; Prasetyawan, Indra B.; Triyono, Chandra D.; Muslim; Maslukah, Lilik

2018-02-01

Sea surface temperature (SST) and chlorophyll-a (Chl-a) are two parameters often used for identifying the marine productivity. Located at the maritime continent, the variability of SST and Chl-a in the Indonesian seas is influenced by El Niño Southern Oscillation (ENSO). The previous studies showed that the effect of El Niño tend to decrease SST and increase Chl-a in the areas within the Indonesian seas. Using long time observation of satellite data (2003-2016), it was found different result in Java Sea. Since Java Sea has strong seasonal variability influenced by monsoon wind, the effect of ENSO depend on the season. During southeast monsoon season, El Niño (La Niña) tend to increase (decrease) the speed of southeasterly wind cause the decrease or increase of SST. On the contrary, during northwest monsoon season, El Niño (La Niña) tend to decrease (increase) the speed of northwesterly wind cause the increase (decrease) of SST. The dependence of Chl-a on wind speed is only observed in the off shore which exhibit the strong seasonal variation. However, the effect of ENSO on the variability of Chl-a is not robust since the effected amplitude is less than the RMSE of Chl-a data.

Eocene greenhouse climate revealed by coupled clumped isotope-Mg/Ca thermometry.

PubMed

Evans, David; Sagoo, Navjit; Renema, Willem; Cotton, Laura J; Müller, Wolfgang; Todd, Jonathan A; Saraswati, Pratul Kumar; Stassen, Peter; Ziegler, Martin; Pearson, Paul N; Valdes, Paul J; Affek, Hagit P

2018-02-06

Past greenhouse periods with elevated atmospheric CO 2 were characterized by globally warmer sea-surface temperatures (SST). However, the extent to which the high latitudes warmed to a greater degree than the tropics (polar amplification) remains poorly constrained, in particular because there are only a few temperature reconstructions from the tropics. Consequently, the relationship between increased CO 2 , the degree of tropical warming, and the resulting latitudinal SST gradient is not well known. Here, we present coupled clumped isotope (Δ 47 )-Mg/Ca measurements of foraminifera from a set of globally distributed sites in the tropics and midlatitudes. Δ 47 is insensitive to seawater chemistry and therefore provides a robust constraint on tropical SST. Crucially, coupling these data with Mg/Ca measurements allows the precise reconstruction of Mg/Ca sw throughout the Eocene, enabling the reinterpretation of all planktonic foraminifera Mg/Ca data. The combined dataset constrains the range in Eocene tropical SST to 30-36 °C (from sites in all basins). We compare these accurate tropical SST to deep-ocean temperatures, serving as a minimum constraint on high-latitude SST. This results in a robust conservative reconstruction of the early Eocene latitudinal gradient, which was reduced by at least 32 ± 10% compared with present day, demonstrating greater polar amplification than captured by most climate models.

Molecular mechanisms of the antiproliferative activity of somatostatin receptors (SSTRs) in neuroendocrine tumors.

PubMed

Florio, Tullio

2008-01-01

The current treatment of neuroendocrine tumors include the use of somatostatin (SST) agonists. These compounds are able to control most of the symptoms caused by the hypersecretory activity of the tumor cells, and for this reason, they provide a significant improvement in the well-being of the patients. Although, several reports also showed a possible direct antiproliferative activity of SST agonists in different neuroendocrine tumors, the therapeutic potential of an in vivo antiproliferative activity mediated by SST receptors is still debated. In recent years, there has been great insights on understanding the molecular basis of the antitumoral activity of SST that appears to be exerted via both direct and indirect mechanisms. Direct mechanisms require the activation of SST receptors in tumor cells and the induction of cell cycle arrest or apoptosis, mainly through the regulation of phosphotyrosine phosphatase (PTP) and MAP kinase activities. The indirect mechanisms involve the inhibition of tumor angiogenesis and the inhibition of the secretion of factors which are required for tumor growth. Here, we will review the molecular mechanisms which are implicated in the antiproliferative activity of SST. Such an understanding is necessary for improving the antitumoral efficacy of SSTR agonists as well as for the development of novel therapeutic strategies.

Model Predictive Control of A Matrix-Converter Based Solid State Transformer for Utility Grid Interaction

DOE Office of Scientific and Technical Information (OSTI.GOV)

Xue, Yaosuo

The matrix converter solid state transformer (MC-SST), formed from the back-to-back connection of two three-to-single-phase matrix converters, is studied for use in the interconnection of two ac grids. The matrix converter topology provides a light weight and low volume single-stage bidirectional ac-ac power conversion without the need for a dc link. Thus, the lifetime limitations of dc-bus storage capacitors are avoided. However, space vector modulation of this type of MC-SST requires to compute vectors for each of the two MCs, which must be carefully coordinated to avoid commutation failure. An additional controller is also required to control power exchange betweenmore » the two ac grids. In this paper, model predictive control (MPC) is proposed for an MC-SST connecting two different ac power grids. The proposed MPC predicts the circuit variables based on the discrete model of MC-SST system and the cost function is formulated so that the optimal switch vector for the next sample period is selected, thereby generating the required grid currents for the SST. Simulation and experimental studies are carried out to demonstrate the effectiveness and simplicity of the proposed MPC for such MC-SST-based grid interfacing systems.« less

Overall behaviour of PFC integrated SST-1 vacuum system

NASA Astrophysics Data System (ADS)

Khan, Ziauddin; Raval, Dilip C.; Paravasu, Yuvakiran; Semwal, Pratibha; Dhanani, Kalpeshkumar R.; George, Siju; Shoaib, Mohammad; Prakash, Arun; Babu, Gattu R.; Thankey, Prashant; Pathan, Firozkhan S.; Pradhan, Subrata

2017-04-01

As a part of phase-I up-gradation of Steady-state Superconducting Tokamak (SST-1), Graphite Plasma Facing Components (PFCs) have been integrated inside SST-1 vacuum vessel as a first wall (FW) during Nov 14 and May 2015. The SST-1 FW has a total surface area of the installed PFCs exposed to plasma is ∼ 40 m2 which is nearly 50% of the total surface area of stainless steel vacuum chamber (∼75 m2). The volume of the vessel within the PFCs is ∼ 16 m3. After the integration of PFCs, the entire vessel as well as the PFC cooling/baking circuits has been qualified with an integrated helium leak tightness of < 1.0 x 10-8 mbar 1/s. The pumping system of the SST-1 vacuum vessel comprises of one number of Roots’ pump, four numbers of turbomolecular pumps and a cryopump. After the initial pump down, the PFCs were baked at 250 °C for nearly 20 hours employing hot nitrogen gas to remove the absorbed water vapours. Thereafter, Helium glow discharges cleaning were carried out towards the removal of surface impurities. The pump down characteristics of SST-1 vacuum chamber and the changes in the residual gaseous impurities after the installation of the PFCs will be discussed in this paper.

Topical Administration of Somatostatin Prevents Retinal Neurodegeneration in Experimental Diabetes

PubMed Central

Hernández, Cristina; García-Ramírez, Marta; Corraliza, Lidia; Fernández-Carneado, Jimena; Farrera-Sinfreu, Josep; Ponsati, Berta; González-Rodríguez, Águeda; Valverde, Ángela M.; Simó, Rafael

2013-01-01

Retinal neurodegeneration is an early event in the pathogenesis of diabetic retinopathy (DR). Somatostatin (SST) is an endogenous neuroprotective peptide that is downregulated in the diabetic eye. The aim of the study was to test the usefulness of topical administration of SST in preventing retinal neurodegeneration. For this purpose, rats with streptozotocin-induced diabetes mellitus (STZ-DM) were treated with either SST eye drops or vehicle for 15 days. Nondiabetic rats treated with vehicle served as a control group. Functional abnormalities were assessed by electroretinography (ERG), and neurodegeneration was assessed by measuring glial activation and the apoptotic rate. In addition, proapoptotic (FasL, Bid, and activation of caspase-8 and caspase-3) and survival signaling pathways (BclxL) were examined. Intraretinal concentrations of glutamate and its main transporter glutamate/aspartate transporter (GLAST) were also determined. Treatment with SST eye drops prevented ERG abnormalities, glial activation, apoptosis, and the misbalance between proapoptotic and survival signaling detected in STZ-DM rats. In addition, SST eye drops inhibited glutamate accumulation in the retina and GLAST downregulation induced by diabetes mellitus. We conclude that topical administration of SST has a potent effect in preventing retinal neurodegeneration induced by diabetes mellitus. In addition, our findings open up a new preventive pharmacological strategy targeted to early stages of DR. PMID:23474487

Topical administration of somatostatin prevents retinal neurodegeneration in experimental diabetes.

PubMed

Hernández, Cristina; García-Ramírez, Marta; Corraliza, Lidia; Fernández-Carneado, Jimena; Farrera-Sinfreu, Josep; Ponsati, Berta; González-Rodríguez, Agueda; Valverde, Angela M; Simó, Rafael

2013-07-01

Retinal neurodegeneration is an early event in the pathogenesis of diabetic retinopathy (DR). Somatostatin (SST) is an endogenous neuroprotective peptide that is downregulated in the diabetic eye. The aim of the study was to test the usefulness of topical administration of SST in preventing retinal neurodegeneration. For this purpose, rats with streptozotocin-induced diabetes mellitus (STZ-DM) were treated with either SST eye drops or vehicle for 15 days. Nondiabetic rats treated with vehicle served as a control group. Functional abnormalities were assessed by electroretinography (ERG), and neurodegeneration was assessed by measuring glial activation and the apoptotic rate. In addition, proapoptotic (FasL, Bid, and activation of caspase-8 and caspase-3) and survival signaling pathways (BclxL) were examined. Intraretinal concentrations of glutamate and its main transporter glutamate/aspartate transporter (GLAST) were also determined. Treatment with SST eye drops prevented ERG abnormalities, glial activation, apoptosis, and the misbalance between proapoptotic and survival signaling detected in STZ-DM rats. In addition, SST eye drops inhibited glutamate accumulation in the retina and GLAST downregulation induced by diabetes mellitus. We conclude that topical administration of SST has a potent effect in preventing retinal neurodegeneration induced by diabetes mellitus. In addition, our findings open up a new preventive pharmacological strategy targeted to early stages of DR.

Fragmentation of contaminant and endogenous DNA in ancient samples determined by shotgun sequencing; prospects for human palaeogenomics.

PubMed

García-Garcerà, Marc; Gigli, Elena; Sanchez-Quinto, Federico; Ramirez, Oscar; Calafell, Francesc; Civit, Sergi; Lalueza-Fox, Carles

2011-01-01

Despite the successful retrieval of genomes from past remains, the prospects for human palaeogenomics remain unclear because of the difficulty of distinguishing contaminant from endogenous DNA sequences. Previous sequence data generated on high-throughput sequencing platforms indicate that fragmentation of ancient DNA sequences is a characteristic trait primarily arising due to depurination processes that create abasic sites leading to DNA breaks. METHODOLOGY/PRINCIPALS FINDINGS: To investigate whether this pattern is present in ancient remains from a temperate environment, we have 454-FLX pyrosequenced different samples dated between 5,500 and 49,000 years ago: a bone from an extinct goat (Myotragus balearicus) that was treated with a depurinating agent (bleach), an Iberian lynx bone not subjected to any treatment, a human Neolithic sample from Barcelona (Spain), and a Neandertal sample from the El Sidrón site (Asturias, Spain). The efficiency of retrieval of endogenous sequences is below 1% in all cases. We have used the non-human samples to identify human sequences (0.35 and 1.4%, respectively), that we positively know are contaminants. We observed that bleach treatment appears to create a depurination-associated fragmentation pattern in resulting contaminant sequences that is indistinguishable from previously described endogenous sequences. Furthermore, the nucleotide composition pattern observed in 5' and 3' ends of contaminant sequences is much more complex than the flat pattern previously described in some Neandertal contaminants. Although much research on samples with known contaminant histories is needed, our results suggest that endogenous and contaminant sequences cannot be distinguished by the fragmentation pattern alone.

Enhancement of the spring East China precipitation response to tropical sea surface temperature variability

NASA Astrophysics Data System (ADS)

Zhang, Mengqi; Sun, Jianqi

2017-12-01

The boreal spring relationship between variabilities of East China precipitation (ECP) and tropical Ocean sea surface temperature (SST) during the period 1951-2014 is investigated in this study. The results show that the leading mode of the ECP variability exhibits an enhanced response to the anomalous El Niño-Southern Oscillation (ENSO)-like SST after the late 1970s, when the SST underwent a decadal change, with two positive centers over the eastern tropical Pacific (ETP) and tropical Indian Ocean (TIO). To further understand the relative roles of the ETP and TIO SST anomalies (SSTAs) in the variability of ECP after the late 1970s, partial regression and correlation methods are used. It is found that, without the contribution of the TIO, ETP SSTA plays a limited role in the variability of ECP after the late 1970s; comparatively, a significant correlation between TIO SST and ECP is identified during the same period, when the ETP signal is linearly removed. Physical analyses show that, after the late 1970s, the TIO SSTA affects East Asian atmospheric circulation in two ways: by exciting a zonal wave-train pattern over the mid-latitude Eurasian Continent and by inducing anomalous convection over the Maritime Continent. Via these two mechanisms, the TIO SST variability results in an anomalous East Asian trough and vertical motion over East China and consequently leads to anomalous precipitation over the region. The physical processes linking the ECP and TIO SST are confirmed by an atmospheric general circulation model experiment forced with idealized TIO warming.

Central Equatorial Pacific Sea Surface Temperatures During the Last Glacial Maximum

NASA Astrophysics Data System (ADS)

Monteagudo, M. M.; Lynch-Stieglitz, J.; Schmidt, M. W.

2017-12-01

The state of the tropical Pacific ocean-atmosphere system during the Last Glacial Maximum (LGM, 19,000-23,000 years BP) remains an area of uncertainty. Spatial patterns of tropical Pacific sea surface temperature (SST) offer insight into atmospheric circulation (i.e. Walker Circulation), however, few records exist for the Central Tropical Pacific (CTP). The few existing glacial CTP SST reconstructions indicate 1-2 °C of warming based on foraminiferal transfer functions (CLIMAP Project Members, 1976). In contrast, evidence from geochemical proxies (Mg/Ca, UK'37, TEX86) show 1-3.5 °C cooling in the eastern and western tropical Pacific (e.g. MARGO Project Members, 2009). In this study we present the first Mg/Ca estimates of glacial CTP SST from a meridional sediment core transect along the Line Islands Ridge (0-7°N, 156-162 °W). We use a time slice approach to establish the magnitude of glacial-interglacial SST change between the LGM (19,000-23,0000 years BP) and the Holocene (0-10,000 years BP) using Mg/Ca in the surface-dwelling foraminifera Globigerinoides ruber. Our results indicate cooling at all latitudes, ranging between 1.2-2.7 °C (Holocene-LGM SST). Northern cores (6.83-2.77 °N) exhibit a smaller glacial-interglacial SST difference than equatorial site 20BB at 1.27 °N. The data generated thus far suggest the glacial meridional SST gradient may have been steeper, possibly as a result of increased zonal winds, equatorial upwelling, or westward expansion of the Eastern Pacific Cold Tongue.

Pliocene Seasonality along the US Atlantic Coastal Plain Inferred from Growth Increment Analysis of Mercenaria carolinensis

NASA Astrophysics Data System (ADS)

Winkelstern, I. Z.; Surge, D. M.

2010-12-01

Pliocene sea surface temperature (SST) data from the US Atlantic coastal plain is currently insufficient for a detailed understanding of the climatic shifts that occurred during the period. Previous studies, based on oxygen isotope proxy data from marine shells and bryozoan zooid size analysis, have provided constraints on possible annual-scale SST ranges for the region. However, more data are required to fully understand the forcing mechanisms affecting regional Pliocene climate and evaluate modeled temperature projections. Bivalve sclerochronology (growth increment analysis) is an alternative proxy for SST that can provide annually resolved multi-year time series. The method has been validated in previous studies using modern Arctica, Chione, and Mercenaria. We analyzed Pliocene Mercenaria carolinensis shells using sclerochronologic methods and tested the hypothesis that higher SST ranges are reflected in shells selected from the warmest climate interval (3.5-3.3 Ma, upper Yorktown Formation, Virginia) and lower SST ranges are observable in shells selected from the subsequent cooling interval (2.4-1.8 Ma, Chowan River Formation, North Carolina). These results further establish the validity of growth increment analysis using fossil shells and provide the first large dataset (from the region) of reconstructed annual SST from floating time series during these intervals. These data will enhance our knowledge about a warm climate state that has been identified in the 2007 IPCC report as an analogue for expected global warming. Future work will expand this study to include sampling in Florida to gain detailed information about Pliocene SST along a latitudinal gradient.