American River Watershed Investigation, California. Volume 5. Appendixes O-R

DTIC Science & Technology

1991-12-01

abundance): Heteromeles arbutifolia Ceanothus integerrimus Quercus wislizenii Umbellularia californica Aesculus californica Toxicodendron diversilobum...betuloides Aesculus californica Galium nuttallii Hypericum a Calochortus albus Delphinium M. Along stream:Salix sp. Alnus sp. Rubus sp. Fraxinus sp...Styrax V.± Rhamnus spp. Aesculus californica Eriogonum sp. Galium nuttallii Clarkia spp. Calochortus albus Brodiaea sp. unid grass Dactylis glomerata

Draft Genome Sequence and Description of Janthinobacterium sp. Strain CG3, a Psychrotolerant Antarctic Supraglacial Stream Bacterium

PubMed Central

Smith, Heidi; Akiyama, Tatsuya; Franklin, Michael; Woyke, Tanja; Teshima, Hazuki; Davenport, Karen; Daligault, Hajnalka; Erkkila, Tracy; Goodwin, Lynne; Gu, Wei; Xu, Yan; Chain, Patrick

2013-01-01

Here we present the draft genome sequence of Janthinobacterium sp. strain CG3, a psychrotolerant non-violacein-producing bacterium that was isolated from the Cotton Glacier supraglacial stream. The genome sequence of this organism will provide insight as to the mechanisms necessary for bacteria to survive in UV-stressed icy environments. PMID:24265494

A water-quality assessment of the Feather Creek watershed, Vermillion County, Indiana

USGS Publications Warehouse

Eikenberry, Stephen E.

1977-01-01

Navicula sp and Scenedesmus sp dominated the phydoplankton community at the site sampled and indicated an environment lacking in organic enrichment. Cladaphora sp dominated the periphyton community sampled. Benthic invertebrates sampled were mostly caddis flies (Cheumatopsyche sp) and midges (Orthocladius sp) and had a diversity index of 2.3, which indicates some organic enrichment of the stream.

Environmental Assessment for Demolition of Building 2148 and Construction of a New Facility

DTIC Science & Technology

2004-02-01

Athene cunicularia SP Caspian Tern Sterna caspia SP Ferruginous Hawk Buteo regalis T Grasshopper Sparrow Ammodramus savannarum SP/SD Lewis’ Woodpecker...northern latitudes winter along streams and lakes throughout Utah and have been observed at the Weber River just north of the Base. Willow Flycatchers...Pelecanus erythrorhynchos SD Black Tern Chlidonias niger SP Blue Grosbeak Guiraca caerulea SP/SD Bobolink Dolichonyx oryzivorus SP/SD Burrowing Owl

The relationship of metals, bifenthrin, physical habitat metrics, grain size, total organic carbon, dissolved oxygen and conductivity to Hyalella sp. abundance in urban California streams.

PubMed

Hall, Lenwood W; Anderson, Ronald D

2013-01-01

The objectives of this study were to determine the relationship between Hyalella sp. abundance in four urban California streams and the following parameters: (1) 8 bulk metals (As, Cd, Cr, Cu, Pb, Hg, Ni, and Zn) and their associated sediment Threshold Effect Levels (TELs); (2) bifenthrin sediment concentrations; (3) 10 habitat metrics and total score; (4) grain size (% sand, silt and clay); (5) Total Organic Carbon (TOC); (6) dissolved oxygen; and (7) conductivity. California stream data used for this study were collected from Kirker Creek (2006 and 2007), Pleasant Grove Creek (2006, 2007 and 2008), Salinas streams (2009 and 2010) and Arcade Creek (2009 and 2010). Hyalella abundance in the four California streams generally declined when metals concentrations were elevated beyond the TELs. There was also a statistically significant negative relationship between Hyalella abundance and % silt for these 4 California streams as Hyalella were generally not present in silt areas. No statistically significant relationships were reported between Hyalella abundance and metals concentrations, bifenthrin concentrations, habitat metrics, % sand, % clay, TOC, dissolved oxygen and conductivity. The results from this study highlight the complexity of assessing which factors are responsible for determining the abundance of amphipods, such as Hyalella sp., in the natural environment.

Inland diatoms from the McMurdo Dry Valleys and James Ross Island, Antarctica

USGS Publications Warehouse

Esposito, R.M.M.; Spaulding, S.A.; McKnight, Diane M.; Van De Vijver, B.; Kopalova, K.; Lubinski, D.; Hall, B.; Whittaker, T.

2008-01-01

Diatom taxa present in the inland streams and lakes of the McMurdo Dry Valleys and James Ross Island, Antarctica, are presented in this paper. A total of nine taxa are illustrated, with descriptions of four new species (Luticola austroatlantica sp. nov., Luticola dolia sp. nov., Luticola laeta sp. nov., Muelleria supra sp. nov.). In the perennially ice-covered lakes of the McMurdo Dry Valleys, diatoms are confined to benthic mats within the photic zone. In streams, diatoms are attached to benthic surfaces and within the microbial mat matrix. One species, L. austroatlantica, is found on James Ross Island, of the southern Atlantic archipelago, and the McMurdo Dry Valleys. The McMurdo Dry Valley populations are at the lower range of the size spectrum for the species. Streams flow for 6-10 weeks during the austral summer, when temperatures and solar radiation allow glacial ice to melt. The diatom flora of the region is characterized by species assemblages favored under harsh conditions, with naviculoid taxa as the dominant group and several major diatom groups conspicuously absent. ?? 2008 NRC.

Predicting Seawater Intrusion in Coastal Groundwater Boreholes Using Self-Potential Data

NASA Astrophysics Data System (ADS)

Graham, M.; MacAllister, D. J.; Jackson, M.; Vinogradov, J.; Butler, A. P.

2017-12-01

Many coastal groundwater abstraction wells are under threat from seawater intrusion: this is exacerbated in summer by low water tables and increased abstraction. Existing hydrochemistry or geophysical techniques often fail to predict the timing of intrusion events. We investigate whether the presence and transport of seawater can influence self-potentials (SPs) measured within groundwater boreholes, with the aim of using SP monitoring to provide early warning of saline intrusion. SP data collection: SP data were collected from a coastal groundwater borehole and an inland borehole (> 60 km from the coast) in the Seaford Chalk of southern England. The SP gradient in the inland borehole was approximately 0.05 mV/m, while that in the coastal borehole varied from 0.16-0.26 mV/m throughout the monitoring period. Spectral analysis showed that semi-diurnal fluctuations in the SP gradient were several orders of magnitude higher at the coast than inland, indicating a strong influence from oceanic tides. A characteristic decrease in the gradient, or precursor, was observed in the coastal borehole several days prior to seawater intrusion. Modelling results: Hydrodynamic transport and geoelectric modelling suggest that observed pressure changes (associated with the streaming potential) are insufficient to explain either the magnitude of the coastal SP gradient or the semi-diurnal SP fluctuations. By contrast, a model of the exclusion-diffusion potential closely matches these observations and produces a precursor similar to that observed in the field. Sensitivity analysis suggests that both a sharp saline front and spatial variations in the exclusion efficiency arising from aquifer heterogeneities are necessary to explain the SP gradient observed in the coastal borehole. The presence of the precursor in the model depends also on the presence and depth of fractures near the base of the borehole. Conclusions: Our results indicate that SP monitoring, combined with hydrodynamic transport and geoelectric modelling, holds considerable promise as an early warning device for seawater intrusion. We now aim to refine our understanding of the technique by applying it to a range of aquifer types.

Macroalgae in a spring stream in Shanxi Province: composition and relation to physical and chemical variables

NASA Astrophysics Data System (ADS)

Hu, Bianfang; Xie, Shulian

2007-07-01

Fourteen stream segments were investigated throughout the Xin’an Spring in Shanxi Province, China in 2004. The variation ranges in stream size, current velocity, discharge, dissolved oxygen, and specific conductance were large. Twenty-two macroalgae species were found in the stream. Major divisions in terms of species numbers were Chlorophyta (59.1%), Cyanophyta (22.8%), Xanthophyta (9.1%), Rhodophyta (4.5%) and Charophyta (4.5%). The most widespread species, Cladophora rivularis (50.0%), also Oedogonium sp. (42.9%) and Spirogyra sp. (42.9%) were well represented throughout the stream, whereas another 10 species were found in only one sampling site. Total percentage cover varied from <1% to 90%. Red algae Batrachospermum acuatum and the charophytes Chara vulgaris have the highest percentage cover. Among the parameters analyzed, the stream width, specific conductance and dissolved oxygen were the ones that more closely related to the species number and percentage cover of macroalgal communities. The species number of each site was negatively correlated with dissolved oxygen content. The total percentage cover of the macroalgae was negatively correlated with the stream width and the specific conductance.

The occurrence of trace elements in bed sediment collected from areas of varying land use and potential effects on stream macroinvertebrates in the conterminous western United States, Alaska, and Hawaii, 1992-2000

USGS Publications Warehouse

Paul, Angela P.; Paretti, Nicholas V.; MacCoy, Dorene E.; Brasher, Anne M.D.

2012-01-01

As part of the National Water-Quality Assessment Program of the U.S. Geological Survey, this study examines the occurrence of nine trace elements in bed sediment of varying mineralogy and land use and assesses the possible effects of these trace elements on aquatic-macroinvertebrate community structure. Samples of bed sediment and macroinvertebrates were collected from 154 streams at sites representative of undeveloped, agricultural, urban, mined, or mixed land-use areas and 12 intermediate-scale ecoregions within the conterminous western United States, Alaska, and Hawaii from 1992 to 2000. The nine trace elements evaluated during this study—arsenic (As), cadmium (Cd), chromium (Cr), copper (Cu), lead (Pb), mercury (Hg), nickel (Ni), selenium (Se), and zinc (Zn)—were selected on the basis of potential ecologic significance and availability of sediment-quality guidelines. At most sites, the occurrence of these trace elements in bed sediment was at concentrations consistent with natural geochemical abundance, and the lowest concentrations were in bed-sediment samples collected from streams in undeveloped and agricultural areas. With the exception of Zn at sampling sites influenced by historic mining-related activities, median concentrations of all nine trace elements in bed sediment collected from sites representative of the five general land-use areas were below concentrations predicted to be harmful to aquatic macroinvertebrates. The highest concentrations of As, Cd, Pb, and Zn were in bed sediment collected from mined areas. Median concentrations of Cu and Ni in bed sediment were similarly enriched in areas of mining, urban, and mixed land use. Concentrations of Cr and Ni appear to originate largely from geologic sources, especially in the western coastal states (California, Oregon, and Washington), Alaska, and Hawaii. In these areas, naturally high concentrations of Cr and Ni can exceed concentrations that may adversely affect aquatic macroinvertebrates. Generally, Hg concentrations were below the sediment-quality guideline for this trace element but appeared elevated in urbanized areas and at sites contaminated by historic mining practices. Lastly, although there was no distinctive pattern in Se concentrations with land use, median bed-sediment concentrations were slightly elevated in urbanized areas.Macroinvertebrate community structure was influenced by topographic, geologic, climatic, and in-stream characteristics. To account for inherent distribution patterns resulting from these influences, samples of macroinvertebrates were stratified by ecoregion to assess the influence of trace elements on community structure. Cumulative toxic units (CTUs) were used to evaluate gradients in trace-element concentrations in mixture. Correlation analyses among the trace elements under different land-use conditions indicate that trace-element mixtures vary among bed sediment and can have a marked influence on CTU composition. Macroinvertebrate response to bed-sediment trace-element exposure was evident only at the most highly contaminated sites, notably at sites classified as contaminated by the Comprehensive Environmental Response, Compensation, and Liability Act (CERCLA) as a result of historic mining activities. Results of this study agree with the findings of other studies evaluating trace-element exposure to in-stream macroinvertebrate community structure in that generally lower richness metrics and taxa dominance occur in streams where high trace-element enrichment occurs; however, not all streams in all areas have the same characterizing taxa. In the mountain and xeric ecosystems, the mayfly, Baetis sp.; the Diptera, Simulium sp.; caddisflies in the family Hydropsychiidae; midges in the family Orthocladiinae; and the worms belonging to Turbellaria and Naididae all demonstrated resilience to trace-element exposure and, in some cases, possible changes in physical habitat within stream ecosystems. The taxa characteristics within the Ozark Highland ecoregion were different than other ecoregions as evidenced by generally more diverse mayfly populations. In addition, Baetis sp. was common and dominated many of the mayfly populations found in the Rocky Mountain streams within the Mountain Southern Rockies and Mountain Northern Rockies ecoregions; however, within the Ozark Highland ecoregion, Tricorythodes sp. appeared to be more common than Baetis sp.

Using Self Potential and Multiphase Flow Modeling to Optimize Groundwater Pumping

NASA Astrophysics Data System (ADS)

Gasperikova, E.; Zhang, Y.; Hubbard, S.

2008-12-01

Numerical and field hydrological and geophysical studies have been conducted to investigate the impact of groundwater pumping on near-river hydrology for a segment of the Russian River at the Wohler Site, California, which is a riverbed filtration system managed by the Sonoma County Water Agency. Groundwater pumping near streams can cause a creation of unsaturated regions and hence reduce the pumping capacity and change the flow paths. A three-dimensional multiphase flow and transport model can be calibrated to the temperature, and water levels at monitoring wells based on known pumping rates, and the river stage. Streaming (self) potential (SP) is one of the electrokinetic processes that describes the coupled behavior of hydraulic and electrical flow within a porous medium, and is easily measured on the surface or in boreholes. Observing temporal and spatial variations in geophysical signatures provides a powerful approach for monitoring changes in the natural systems due to natural or forced (pumping) system perturbations. Geophysical and hydrological data were collected before, during and after a pumping experiment at the Wohler Site. Using this monitoring dataset, we illustrate how loose coupling between hydrogeological and geophysical (SP) processes and data can be used to calibrate the flow model and to optimize pumping schedules as needed to guide sustainable water resource development.

Feeding preference of the shredder Phylloicus sp. for plant leaves of Chrysophyllum oliviforme or Miconia chartacea after conditioning in streams from different biomes.

PubMed

Reis, D F; Machado, M M D; Coutinho, N P; Rangel, J V; Moretti, M S; Morais, P B

2018-04-23

Macroinvertebrate shredders consume preferably leaves conditioned by fungi and bacteria which offer greater palatability to them. Plant species in Cerrado present high concentration of chemical elements such as lignin and cellulose, phenols and tanins thus making them less attractive for shredders consumption and limiting the palatability. This study aimed to evaluate the feeding preference of a macroinvertebrate shredder of the genus Phylloicus for plant material from two different biomes (Cerrado and Mata Atlântica), after conditioning in a stream of Mata Atlântica and observing their physical and chemical characteristics. Senescent leaves were collected, monthly from the litterfall of riparian vegetation in a 500 m stretch of a stream in each biome from August 2014 to January 201. The most abundant species in each stream was selected for the experiment. The experimental design consisted in with two treatments. The first (T1) comprised leaf discs from Chrysophyllum oliviforme (Cerrado species) together with leaf discs of Miconia chartacea (Atlantic Forest species) which were conditioned in the Atlantic Forest stream. The second treatment (T2) involved leaf discs of Miconia chartacea conditioned in Mata Altlântica and Cerrado streams. Both tests had showed significant differences between the two treatments (T1 and T2). For T1, there was consumption of M. chartacea leaf discs by Phylloicus sp., but there was no consumption of C. oliviforme discs. For T2, there was preference for M. chartaceae leaves conditioned in a stream of Mata Atlântica than in Cerrado stream. The results showed that Phylloicus sp., had presented preference for food detritus of the Mata Antlântica biome and rejection to the one from Cerrado biome.

Surface-water quality in agricultural watersheds of the North Carolina Coastal Plain associated with concentrated animal feeding operations

USGS Publications Warehouse

Harden, Stephen L.

2015-01-01

A classification tree model was developed to examine relations of watershed environmental attributes among the study sites with and without CAFO manure effects. Model results indicated that variations in swine barn density, percentage of wetlands, and total acres available for applying swine-waste manures had an important influence on those watersheds where CAFO effects on water quality were either evident or mitigated. Measurable effects of CAFO waste manures on stream water quality were most evident in those SW and SP watersheds having lower percentages of wetlands combined with higher swine barn densities and (or) higher total acres available for applying waste manure at the swine CAFOs. Stream water quality was similar to background agricultural conditions in SW and SP watersheds with lower swine barn densities coupled with higher percentages of wetlands or lower acres available for swine manure applications. The model provides a useful tool for exploring and identifying similar, unmonitored watersheds in the North Carolina Coastal Plain with potential CAFO manure influences on water quality that might warrant further examination.

Water pollution and distribution of the black fly (Diptera: Simuliidae) in the Atlantic Forest, Brazil.

PubMed

Docile, Tatiana N; Figueiró, Ronaldo; Gil-Azevedo, Leonardo H; Nessimian, Jorge L

2015-09-01

Black flies have medical importance because some species are vectors of the unenocerciasis and Mansonelosis, nevertheless, their ecology and potential use as bioindicators is still poorly studied in the Neotropical Region. In Brazil, bioindicators use is strongly focused in a multimetrical ecological index approach; this way, we investigated the black fly spatial distribution, in relation to abiotic factors correlated to water quality, to provide baseline information for their utilization as standalone indicators of lotic systems integrity. We have tested the hypothesis that environmental changes related to urbanization, lead to decreased abundance and loss in the number of species of the black fly fauna. The sampling was conducted in 10 urban and 10 preserved streams during the dry season (August-September) of 2012, in the mountainous region of Teres6polis, State of Rio de Janeiro, Brazil. The streams were characterized for their environmental integrity conditions and physico-chemical properties of water. In each stream, five different rapid points were sampled in a section of 50 meters, 10 meters apart from each other. The black flies were sampled with a kick-net sampler on rocky substrates. The material was separated and the larvae were sorted in morphotypes, and later, the final instar specimens were dissected and identified with the help of taxonomical literature at species level. A total abundance of 488 larvae from nine species were collected, 5 (1.02 %) in extremely impacted streams, 470 (96.31 %) in intermediate streams and 13 (2.66 %) in preserved streams. The visual evaluation (HII) differed in relation to the water physico-chemical evaluation, in which more variation in the characterization of the sampling sites was observed. In Canonical Correspondence Analysis Simulium subpallidum, S. inscrustatum and S. pertinax were significantly associated with intermediate values of most of the variables, and then to intermediate impacted sites. On the other hand, Lutzsimulium hirticosta, S. subnigrzm and Simulium sp. A were associated to low values of chemical variables, and then to more preserved sites. Most studies on the bioindicator potential of Simuliidae have suggested an approach to agricultural impacts, while our results, on the other hand, showed that Simuliidae species were present in streams with intermediate urban pollution impacts, but absent in heavily impacted sites. Thus, our data suggested that some species are associated to more pristine breeding sites, such as L. hirticosta and Simulium sp. A, while others may be good bioindicators of moderately impacted streams, such as S. nertinax. S. subnigrum and S. subpallidum.

Monitoring the Dynamics of Water Flow at a High-Mountain Permafrost Site Using Electrical Self-Potential Measurements

NASA Astrophysics Data System (ADS)

Kemna, A.; Weigand, M.; Wagner, F.; Hilbich, C.; Hauck, C.

2016-12-01

Flow of (liquid) water plays a crucial role in the dynamics of coupled thermo-hydro-mechanical processes in terrestrial permafrost systems. To better understand these processes in the active layer of permafrost regions, with the ultimate goal of adequately incorporating them in numerical models for improved scenario prediction, monitoring approaches offering high spatial and temporal resolution, areal coverage, and especially sensitivity to subsurface water flow, are highly desired. This particularly holds for high-mountain slopes, where strong variability in topography, precipitation, and snow cover, along with significant subsurface soil/rock heterogeneity, gives rise to complex spatio-temporal patterns of water flow during seasonal thawing and freezing periods. The electrical self-potential (SP) method is well known to, in theory, meeting the above monitoring demands by measuring the electrical streaming potential which is generated at the microscopic scale when water flows along electrically non-neutral interfaces. Despite its inherent sensitivity to subsurface water flow, the SP method has not yet been used for the monitoring of high-mountain permafrost sites. We here present first results from an SP monitoring survey conducted at the Schilthorn (2970 m asl) in the Bernese Alps, Switzerland, where SP data have been collected since September 2013 at a sampling rate of 10 min on a permanently installed array of 12 non-polarizing electrodes covering an area of 35 m by 15 m. While the SP time series exhibit systematic daily variations, with part of the signal clearly correlated with temperature, in particular in the snow-free periods, the largest temporal changes in the SP signal occur in spring, when the snow cover melts and thawing sets on in the active layer. The period of higher temporal SP variations continues until autumn, when the signal gradually returns to relatively low variations, coinciding with the freezing of the ground. Our results suggest that the SP method is a suitable tool for the monitoring of seasonal water flow dynamics at high-mountain permafrost sites. Current work is directed towards an improved field setup, as well as the quantitative analysis of the SP data based on laboratory calibration measurements.

Protecting coastal abstraction boreholes from seawater intrusion using self-potential data

NASA Astrophysics Data System (ADS)

Graham, Malcolm; Butler, Adrian; MacAllister, Donald John; Vinogradov, Jan; Ijioma, Amadi; Jackson, Matthew

2016-04-01

We investigate whether the presence and transport of seawater can influence self-potentials (SPs) measured within coastal groundwater boreholes, with a view to using SP monitoring as part of an early warning system for saline intrusion. SP data were collected over a period of 18 months from a coastal groundwater borehole in the fractured Chalk of England. Spectral analysis of the results shows semi-diurnal fluctuations that are several orders of magnitude higher than those observed from monitoring of the Chalk more than 60 km inland, indicating a strong influence from oceanic tides. Hydrodynamic and geoelectric modelling of the coastal aquifer suggests that observed pressure changes (giving rise to the streaming potential) are not sufficient to explain the magnitude of the observed SP fluctuations. Simulation of the exclusion-diffusion potential, produced by changes in concentration across the saline front, is required to match the SP data from the borehole, despite the front being located some distance away. In late summer of 2013 and 2014, seawater intrusion occurred in the coastal monitoring borehole. When referenced to the shallowest borehole electrode, there was a characteristic increase in SP within the array, several days before any measurable increase in salinity. The size of this precursor increased steadily with depth, typically reaching values close to 0.3 mV in the deepest electrode. Numerical modelling suggests that the exclusion-diffusion potential can explain the magnitude of the precursor, but that the polarity of the change in SP cannot be replicated assuming a homogeneous aquifer. Small-scale models of idealised Chalk blocks were used to simulate the effects of discrete fractures on the distribution of SP. Initial results suggest that comparatively large reductions in voltage can develop in the matrix ahead of the front, in conjunction with a reduced or absent precursor in the vicinity of a fracture. Geophysical logging indicates the presence of a fracture zone near the base of our measurement array, and when included in the numerical modelling we find an apparent increase in SP prior to saline breakthrough consistent with the field observations. Several challenges remain in accurately simulating all of the observed SP components at our study site and in identifying the presence or absence of these phenomena across a range of aquifer types. Nonetheless, this work represents an important step in the development of a new borehole geophysical monitoring tool for groundwater managers to identify impending seawater intrusion and adapt planned abstraction regimes accordingly.

Sylphellapuccoon gen. n., sp. n. and two additional new species of aquatic oligochaetes (Lumbriculidae, Clitellata) from poorly-known lotic habitats in North Carolina (USA).

PubMed

Rodriguez, Pilar; Fend, Steven V; Lenat, David R

2014-01-01

Three new species of Lumbriculidae were collected from floodplain seeps and small streams in southeastern North America. Some of these habitats are naturally acidic. Sylphellapuccoon gen. n., sp. n. has prosoporous male ducts in X-XI, and spermathecae in XII-XIII. Muscular, spherical atrial ampullae and acuminate penial sheaths distinguish this monotypic new genus from other lumbriculid genera having similar arrangements of reproductive organs. Cookidriluspocosinus sp. n. resembles its two subterranean, Palearctic congeners in the arrangement of reproductive organs, but is easily distinguished by the position of the spermathecal pores in front of the chaetae in X-XIII. Stylodriluscoreyi sp. n. differs from congeners having simple-pointed chaetae and elongate atria primarily by the structure of the male duct and the large clusters of prostate cells. Streams and wetlands of Southeastern USA have a remarkably high diversity of endemic lumbriculids, and these poorly-known invertebrates should be considered in conservation efforts.

Sylphella puccoon gen. n., sp. n. and two additional new species of aquatic oligochaetes (Lumbriculidae, Clitellata) from poorly-known lotic habitats in North Carolina (USA)

USGS Publications Warehouse

Rodriguez, Pilar; Fend, Steven V.; Lenat, David R.

2014-01-01

Three new species of Lumbriculidae were collected from floodplain seeps and small streams in southeastern North America. Some of these habitats are naturally acidic. Sylphella puccoon gen. n., sp. n. has prosoporous male ducts in X-XI, and spermathecae in XII-XIII. Muscular, spherical atrial ampullae and acuminate penial sheaths distinguish this monotypic new genus from other lumbriculid genera having similar arrangements of reproductive organs. Cookidrilus pocosinus sp. n. resembles its two subterranean, Palearctic congeners in the arrangement of reproductive organs, but is easily distinguished by the position of the spermathecal pores in front of the chaetae in X-XIII. Stylodrilus coreyi sp. n. differs from congeners having simple-pointed chaetae and elongate atria primarily by the structure of the male duct and the large clusters of prostate cells. Streams and wetlands of Southeastern USA have a remarkably high diversity of endemic lumbriculids, and these poorly-known invertebrates should be considered in conservation efforts.

Does Nature and Persistence of Substrate at a Mesohabitat Scale Matter for Chironomidae Assemblages? a Study of Two Perennial Mountain Streams in Patagonia, Argentina

PubMed Central

Epele, Luis Beltrán; Miserendino, María Laura; Brand, Cecilia

2012-01-01

Chironomid substrate—specific associations regarding the nature (organic—inorganic) and stability (stable—unstable) of different habitats were investigated at two low order Patagonian streams, during high and low water periods. Nant y Fall and Glyn rivers were visited twice (October 2007 and March 2008) and seven different habitat types were identified. A total of 60 samples were collected using a Surber sampler (0.09 m -2 and 250 µm) and a set of 23 environmental descriptors including physicochemical parameters and different fractions of particulate organic matter were assessed. 35 Chironomidae taxa were recorded with Orthocladiinae (20), Chironominae (7), and Podonominae (4) being the most well—represented subfamilies. Paratrichocladius sp. 1, Parapsectrocladius sp. 2, Parametriocnemus sp. 1, Pseudochironomus sp., and Rheotanytarsus sp. were the most abundant taxa. According to the relative preference index, at least 14 taxa showed strong affinity for a particular substrate. The structurally complex macrophyte Myriophyllum quitense supported 11 taxa compared with only five taxa found on the less complex Isoetes savatieri. Generally, stable substrates (boulders, cobbles, and rooted plants) supported significantly higher chironomids richness, abundance, and diversity than unstable ones (gravel—sand). Canonical correspondence analysis revealed that detritus (leaves, seeds, and biomass), macrophyte biomass, and secondarily hydraulic variables had high explanatory power on chironomids species composition and structure. This work suggests that more complex substrates showing persistence in the temporal dimension supported a diverse array of chironomids, meaning that the maintenance of natural habitat heterogeneity is essential for the community. Land—use practices having significant effects on ecological stream attributes such as increased turbidity, sediment deposition, and runoff patterns will alter assemblages. Understanding environmental associations of the Chironomidae assemblage at the habitat scale is significant for conservation purposes and for the management of low order streams in Patagonia. PMID:22947060

Evaluation of the Green Microalga Monoraphidium sp. Dek19 Growth Utilizing Ethanol Plant Side Streams and Potential for Biofuel Production

NASA Astrophysics Data System (ADS)

Colson, David Michael

This research was conducted to evaluate the potential for growth of Monoraphidium sp. Dek19 using side streams from an ethanol plant for culture medium. Additionally, the potential of using enzymes to break down the cell wall material to release fermentable sugars and oil was examined. The ethanol streams selected were methanator influent, methanator effluent, and thin stillage. This species of microalgae has been previously studied and found to have the ability to grow in and remediate the effluent water from the DeKalb Sanitary District (DSD). The Monoraphidium sp. Dek19 was grown in various concentrations of the ethanol plant side streams concurrently with algae cultures grown in the DSD effluent. The algae cultures were grown in 250ml flasks to determine the optimal concentrations of the ethanol streams. The concentrations with the growth rate and cell counts closest to or higher than the DSD effluents were selected for further examination. These concentrations were repeated to evaluate the most optimal growth conditions using the ethanol streams in comparison to the DSD effluent grown algae. The selected growth condition for the ethanol streams was determined to be using the methanator effluent as the base water component with the thin stillage added to a 2% concentration. The 2% concentration showed an average increase in cell count to be 8.49% higher than the control cell count. The methanator influent was discarded as a base water component, as the growth of the algae was 40.18% less than that of the control. Other concentrations considered resulted in a decrease in cell. count ranging from 9.20-48.97%. The three closest growth results of the concentration of thin stillage and methanator effluent (1%, 2%, and 4%) were scaled up to 2L flasks to confirm the results on a larger scale. The results showed a greater reduction in the cell count of the 1% and 4% concentrations, 23.52% and 16.31% reduction in cell count respectively. The 2% concentration showed a similar increase in cell count as before at 12.59% increase in cell count over the control. The 2% concentration algae growth cultures were grown exclusively alongside of the control group of DSD effluent grown algae. The solutions were grown to carrying capacity and the algae biomass was extracted from the solution by centrifugation and air drying in a dehydrator. This was repeated until enough biomass was collected to conduct rehydration and a typical anaerobic fermentation process. The resuspended algae were pH adjusted to a pH of 5.2 ±0.2. The algae were treated with a combination of cellulase and alpha-amylase, and put through a liquefaction process at 80°C for 3 hours. The resulting solutions were analyzed using High Performance Liquid Chromatography (HPLC) to evaluate the sugar profile of each treatment. The liquefaction solutions were treated with further enzymes, nutrients, and yeast and ran through an anaerobic fermentation process. The fermentations were allowed to progress for 72 hours, and were again analyzed using an HPLC for ethanol and sugar profile. The fermentation results showed a potential of up to 0.587%w/v ethanol production in a 10% solids microalgae slurry. The remaining fermentation products were analyzed using a petroleum ether lipid extraction unit. This analysis showed that the DSD effluent microalgae had an average of 15.53% lipid content on a dry matter basis, and the methanator effluent with 2% thin stillage added resulted in 28.02% lipid content on a dry matter basis. The fermentation products were also treated with a demulsifier, spun down with a centrifuge, and examination of a released lipid layer was conducted. This analysis showed that there was a thin layer of oil on almost all treatments of the algae solutions when spun down in a centrifuge. These. results indicate that the cellulosic enzymes broke down the cell wall material sufficiently for the quick extraction of the oil without the use of hexane. The entirety of the resulting analysis showed that Monoraphidium sp. Dek19 is a viable option for growth using the side streams from an ethanol plant and the use of enzymes will breakdown the biomass of the algae for production of cellulosic ethanol. Additionally, the extraction of oil can be performed in a quicker and safer manner.

Development of diatom indicators of ecological conditions for streams of the western US

EPA Science Inventory

The species composition of benthic diatoms was related to environmental conditions in streams throughout the western US to develop diatom traits, indicators for assessment of biological condition and indicators for diagnosing stressors. We hypothesized that indicators based on sp...

Cambarus polypilosus, a new species of stream-dwelling crayfish (Decapoda: Cambaridae) from the Western Highland Rim of Tennessee, USA.

PubMed

Loughman, Zachary J; Williams, Bronwyn W

2018-04-03

Cambarus polypilosus sp. nov. is a stream-dwelling crayfish endemic to tributaries in the Buffalo and lower Duck River drainage, and a reach of the lower Tennessee River in the Western Highland Rim of West-Central Tennessee, U.S.A. The new species is closely allied to the three members of the former subgenus Glareocola, but can be differentiated from each by a combination of characters, including body size, coloration, spination, setation, and form I male gonopod morphology. Several meristic measurements and ratios also differentiate C. polypilosus sp. nov. from Cambarus friaufi, to which it is morphologically most similar. Cambarus polypilosus sp. nov. appears to be common in cherty gravel and cobble habitats, where it is typically found in interstices at depths of 0.3 m or more below the substrate surface.

Spatiotemporal variation of macroinvertebrates in relation to canopy cover and other environmental factors in Eriora River, Niger Delta, Nigeria.

PubMed

Arimoro, Francis O; Obi-Iyeke, Grace E; Obukeni, Prince J O

2012-10-01

Canopy cover is well known to influence the distribution of macroinvertebrates in temperate streams. Very little is known about how this factor influences stream communities in Afrotropical streams. The effects and possible interactions of environmental factors and canopy cover on macroinvertebrate community structure (abundance, richness, and diversity) were examined in four stations in Eriora River, southern Nigeria bimonthly from May to November 2010. The river supported diverse macroinvertebrates in which the upstream sampling stations with dense canopy cover were dominated by Decapoda, Ephemeroptera, Odonata, Gastropoda, Trichoptera, and Coleoptera while Diptera and Coleoptera were the benthic organisms found predominant at downstream stations with less canopy cover. Some caddisfly species such as Agapetus agilis, Trichosetodes species and the stonefly Neoperla species were present upstream and were found to be potential bioindicators for a clean ecosystem. The blood worm Chironomus species and Tabanus sp. were abundant at the downstream of the river and are considered potential bioindicators for an organically degrading ecosystem. Some environmental factors varied temporally with significantly higher macroinvertebrate abundance and richness in May. We found out that canopy cover and environmental factors affected macroinvertebrates abundance, diversity, and richness and that the individual taxon had varying responses to these factors. These results help identify the mechanisms underlying the effects of canopy cover and other environmental factors on Afrotropical stream invertebrate communities.

Three new species of Macrelmis Motschulsky, 1859 (Coleoptera: Elmidae: Elminae) from the Brazilian Cerrado Biome with updated key for the Macrelmis of Brazil.

PubMed

Barbosa, Felipe Francisco; Fernandes, André Silva; Oliveira, Leandro Gonçalves

2013-11-12

Three new species of Macrelmis Motschulsky, 1859 (Macrelmis bispo sp. nov., Macrelmis froehlichi sp. nov., and Macrelmis nessimiani sp. nov.) are herein described and illustrated. The species were collected from several streams in Goiás State, Brazil, a formerly unknown region concerning Elmidae fauna. We also provide an updated key for the Macrelmis species of Brazil.

Parasite community structure in Pimephales promelas (Pisces: Cyprinidae) from two converging streams.

PubMed

Weichman, M A; Janovy, J

2000-06-01

Parasites of the fathead minnow, Pimephales promelas, were examined in fish collected from Elk Creek (40.88534 degrees N, 96.83366 degrees W) and West Oak Creek (40.90821 degrees N, 96.81432 degrees W), Lancaster County, Nebraska. These 2 streams are part of the Salt Valley watershed and flow together approximately 2 km downstream from the collection sites to form Oak Creek. This study examined the extent to which the 2 tributaries constitute a continuous habitat with respect to fish hosts. The parasite community included Trichodina sp., Myxobolus sp., Dactylogyrus simplex, D. bychowskyi, and D. pectenatus (all on gills); Gyrodactylus hoffmani (gill and body surface); Posthodiplostomum sp. (neascus, body cavity); and Uvulifer ambloplitis (encysted in skin). Among 46 fish from Elk Creek and 56 fish from West Oak Creek taken on 5 dates during April-July 1998, U. ambloplitis was found in Elk Creek fish at prevalences of 44-100% but in only 2 West Oak fish on 1 date. Prevalence and mean abundance of D. simplex also differed between the 2 sites. On the basis of these observations, fish populations in the 2 streams were considered to be distinct, with little or no fish movement between the tributaries.

Capoeta damascina (Valenciennes, 1842), a new host of Contracaecum sp. and Capillaria sp. (Nematoda) from the Kor River Basin, southwestern Iran

PubMed Central

Gholami, Zeinab; Rahimi, Mohammad Taghi; Kia, Eshrat Beigom; Esmaeili, Hamid Reza; Mobedi, Iraj

2014-01-01

Objective To investigate the parasitic infection status of cyprinid fish, Capoeta damascina in Gomban spring-stream, Kor River Basin, Fars Province, southwestern Iran. Methods A total of 12 cyprinid fish (7 females and 5 males) were collected from Gomban spring-stream, Kor River Basin, Fars Province, southwestern Iran. The collected fish were dissected carefully and their internal organs such as liver, gonad, muscle, abdominal lobes, whole viscera and digestive tract were surveyed parasitologically. Results One female cyprinid fish out of 12 fish was infected with three nematodes. Two nematodes (larvae) were identified as Contracaecum sp. which were attached firmly to the outer part of intestine and another adult helminth was recognized as Capillaria sp. which was recovered from digestive content. Conclusions This study is the first record indicating that cyprinid fish acts as a new host for recovered nematodes. Further helminthological investigations are highly recommended in different parts of Iran in order to expand our knowledge about helmintic parasites of cyprinid fish and their role in transmission of diseases to human and animal. PMID:25183068

Geothermal evolution of an intruded dike in the rift zone of Kilauea volcano, Hawaii from VLF and self-potential measurements

NASA Astrophysics Data System (ADS)

Davis, Paul M.

2015-09-01

Self-potential (SP) and VLF measurements were made in 1973, 1975, 1995, 1997 and 2012 across a basaltic dike that intruded into the Koae fault zone of Kilauea volcano, Hawaii in May 1973. The SP anomaly remained strong throughout. In 2012 it was at about 60% of the strength it had in 1973. In contrast, the VLF anomaly, though diminished, was still observable in 1995/1997, but by 2012 it had disappeared. A hydrothermal dike model, with parameters calibrated by modeling the solidification of Kilauea Iki lava lake, is used to calculate temperatures and conductivity variation. Following Jaeger's (1957) method, we find that the time in years for a dike of width W (m) to solidify is 0.0075W2. Thus, a 1 m dike solidifies within the first few days, and after 39 years is only tens of degrees above ambient. Given the orders of magnitude difference between the conductivities of wet and dry basalt, we infer, that after solidification, the VLF anomalies were caused by induction in a localized veil of wet, hot basalt enveloping the dike, that was generated initially by condensation of steam, and subsequently by condensation of evaporated water as temperatures reduced. The conductivity anomaly persisted until the mid-nineties. By 2012, temperatures and condensation were too small for a VLF signal. The persistent SP anomaly is attributed to localized fluid disruption, with evaporation mainly at the water table and in the vadose zone. Streaming potentials are associated with evaporative circulation in the vadose zone. Next to the dike a positive potential is generated by upward flow of moisture-laden air, with a smaller negative potential on its flanks from downward infiltrating rainwater. The analysis indicates that the combination of SP and VLF measurements can characterize the evolving geothermal regime of intrusions above the water table.

A set-up for simultaneous measurement of second harmonic generation and streaming potential and some test applications.

PubMed

Lützenkirchen, Johannes; Scharnweber, Tim; Ho, Tuan; Striolo, Alberto; Sulpizi, Marialore; Abdelmonem, Ahmed

2018-06-15

We present a measurement cell that allows simultaneous measurement of second harmonic generation (SHG) and streaming potential (SP) at mineral-water interfaces with flat specimen that are suitable for non-linear optical (NLO) studies. The set-up directly yields SHG data for the interface of interest and can also be used to obtain information concerning the influence of flow on NLO signals from that interface. The streaming potential is at present measured against a reference substrate (PTFE). The properties of this inert reference can be independently determined for the same conditions. With the new cell, for the first time the SHG signal and the SP for flat surfaces have been simultaneously measured on the same surface. This can in turn be used to unambiguously relate the two observations for identical solution composition. The SHG test of the cell with a fluorite sample confirmed previously observed differences in NLO signal under flow vs. no flow conditions in sum frequency generation (SFG) investigations. As a second test surface, an inert ("hydrophobic") OTS covered sapphire-c electrolyte interface was studied to verify the zeta-potential measurements with the new cell. For this system we obtained combined zeta-potential/SHG data in the vicinity of the point of zero charge, which were found to be proportional to each other as expected. Furthermore, on the accessible time scales of the SHG measurements no effects of flow, flow velocity and stopped flow occurred on the interfacial water structure. This insensitivity to flow for the inert surface was corroborated by concomitant molecular dynamics simulations. Finally, the set-up was used for simultaneous measurements of the two properties as a function of pH in automated titrations with an oxidic surface. Different polarization combinations obtained in two separate titrations, yielded clearly different SHG data, while under identical conditions zeta-potentials were exactly reproduced. The polarization combination that is characteristic for dipoles perpendicular to the surface scaled with the zeta-potentials over the pH-range studied, while the other did not. The work provides an advanced approach for investigating liquid/surface interactions which play a major role in our environment. The set-up can be upgraded for SFG studies, which will allow more detailed studies on the chemistry and the water structure at a given interface, but also the combined study of specific adsorption including kinetics in combination with electrokinetics. Such investigations are crucial for the basic understanding of many environmental processes from aquatic to atmospheric systems. Copyright © 2018 Elsevier Inc. All rights reserved.

A 2D forward and inverse code for streaming potential problems

NASA Astrophysics Data System (ADS)

Soueid Ahmed, A.; Jardani, A.; Revil, A.

2013-12-01

The self-potential method corresponds to the passive measurement of the electrical field in response to the occurrence of natural sources of current in the ground. One of these sources corresponds to the streaming current associated with the flow of the groundwater. We can therefore apply the self- potential method to recover non-intrusively some information regarding the groundwater flow. We first solve the forward problem starting with the solution of the groundwater flow problem, then computing the source current density, and finally solving a Poisson equation for the electrical potential. We use the finite-element method to solve the relevant partial differential equations. In order to reduce the number of (petrophysical) model parameters required to solve the forward problem, we introduced an effective charge density tensor of the pore water, which can be determined directly from the permeability tensor for neutral pore waters. The second aspect of our work concerns the inversion of the self-potential data using Tikhonov regularization with smoothness and weighting depth constraints. This approach accounts for the distribution of the electrical resistivity, which can be independently and approximately determined from electrical resistivity tomography. A numerical code, SP2DINV, has been implemented in Matlab to perform both the forward and inverse modeling. Three synthetic case studies are discussed.

Distribution of biota in a stream polluted by acid mine-drainage

DOE Office of Scientific and Technical Information (OSTI.GOV)

Warner, R.W.

1971-01-01

Acidic water draining from coal mines has severly restricted the diversity of biota inhabiting Roaring Creek, eastern West Virginia. Polluted reaches of the stream (median pH values ranging from 2.8 to 3.8) were inhabited by 3 to 12 genera of bottom-dwelling invertebrates and 10 to 19 species of periphytic algae. Invertebrates tolerant of the pollution included Sialis sp., chironomus plumosus and other Chironomidae, dytiscid beetles, and Ptilostomis sp. Predominant among the tolerant periphyton were Ulothrix tenerrima, Pinnularia termitina, Eunotia exigua, and Euglena mutabilis. Six other species of algae were tolerant of the acid mine-pollution, but were never numerous. Sections ofmore » Roaring Creek not severely polluted by acid drainage (pH medians of 4.5 or higher) supported diverse communities of 25 or more kinds of benthic animals and 27 or more species of periphytic algae. These stream reaches were inhibited by blackflies, crayfish, mayflies, stoneflies, and many species of caddisflies; these forms did not inhabit the more acidic stream reaches. Because of the complex and varying chemical composition of the acid mine-drainage, and also because of possible physical influences, measurements of pH values in the stream seemed to provide the most reliable, as well as unique, index of the effects of acid mine-drainage on aquatic life.« less

Pharmaceuticals suppress algal growth and microbial respiration and alter bacterial communities in stream biofilms.

PubMed

Rosi-Marshall, Emma J; Kincaid, Dustin W; Bechtold, Heather A; Royer, Todd V; Rojas, Miguel; Kelly, John J

2013-04-01

Pharmaceutical and personal care products are ubiquitous in surface waters but their effects on aquatic biofilms and associated ecosystem properties are not well understood. We measured in situ responses of stream biofilms to six common pharmaceutical compounds (caffeine, cimetidine, ciprofloxacin, diphenhydramine, metformin, ranitidine, and a mixture of each) by deploying pharmaceutical-diffusing substrates in streams in Indiana, Maryland, and New York. Results were consistent across seasons and geographic locations. On average, algal biomass was suppressed by 22%, 4%, 22%, and 18% relative to controls by caffeine, ciprofloxacin, diphenhydramine, and the mixed treatment, respectively. Biofilm respiration was significantly suppressed by caffeine (53%), cimetidine (51%), ciprofloxacin (91%), diphenhydramine (63%), and the mixed treatment (40%). In autumn in New York, photosynthesis was also significantly suppressed by diphenhydramine (99%) and the mixed treatment (88%). Pyrosequencing of 16S rRNA genes was used to examine the effects of caffeine and diphenhydramine on biofilm bacterial community composition at the three sites. Relative to the controls, diphenhydramine exposure significantly altered bacterial community composition and resulted in significant relative increases in Pseudomonas sp. and decreases in Flavobacterium sp. in all three streams. These ubiquitous pharmaceuticals, alone or in combination, influenced stream biofilms, which could have consequences for higher trophic levels and important ecosystem processes.

The ‘Ventral Organs’ of Pycnogonida (Arthropoda) Are Neurogenic Niches of Late Embryonic and Post-Embryonic Nervous System Development

PubMed Central

Brenneis, Georg; Scholtz, Gerhard

2014-01-01

Early neurogenesis in arthropods has been in the focus of numerous studies, its cellular basis, spatio-temporal dynamics and underlying genetic network being by now comparably well characterized for representatives of chelicerates, myriapods, hexapods and crustaceans. By contrast, neurogenesis during late embryonic and/or post-embryonic development has received less attention, especially in myriapods and chelicerates. Here, we apply (i) immunolabeling, (ii) histology and (iii) scanning electron microscopy to study post-embryonic ventral nerve cord development in Pseudopallene sp., a representative of the sea spiders (Pycnogonida), the presumable sister group of the remaining chelicerates. During early post-embryonic development, large neural stem cells give rise to additional ganglion cell material in segmentally paired invaginations in the ventral ectoderm. These ectodermal cell regions – traditionally designated as ‘ventral organs’ – detach from the surface into the interior and persist as apical cell clusters on the ventral ganglion side. Each cluster is a post-embryonic neurogenic niche that features a tiny central cavity and initially still houses larger neural stem cells. The cluster stays connected to the underlying ganglionic somata cortex via an anterior and a posterior cell stream. Cell proliferation remains restricted to the cluster and streams, and migration of newly produced cells along the streams seems to account for increasing ganglion cell numbers in the cortex. The pycnogonid cluster-stream-systems show striking similarities to the life-long neurogenic system of decapod crustaceans, and due to their close vicinity to glomerulus-like neuropils, we consider their possible involvement in post-embryonic (perhaps even adult) replenishment of olfactory neurons – as in decapods. An instance of a potentially similar post-embryonic/adult neurogenic system in the arthropod outgroup Onychophora is discussed. Additionally, we document two transient posterior ganglia in the ventral nerve cord of Pseudopallene sp. and evaluate this finding in light of the often discussed reduction of a segmented ‘opisthosoma’ during pycnogonid evolution. PMID:24736377

Telosticta fugispinosa sp. nov. from Sabah (Odonata: Zygoptera: Platystictidae).

PubMed

Dow, Rory A; Afendy, Aqilah; Rahman, Homathevi

2016-04-14

Telosticta fugispinosa sp. nov. (holotype male, from Borneo, Sabah, West Coast division, Crocker Range National Park, Inobong, Kimamabang waterfall stream system, 21 ix 2012, deposited in RMNH) is described from Kinabalu National Park and Crocker Range National Park in Sabah, Malaysian Borneo. It is distinguished from all other species of Telosticta by the form of the male anal appendages.

The use of invertebrates as indicators of environmental change in alpine rivers and lakes.

PubMed

Khamis, K; Hannah, D M; Brown, L E; Tiberti, R; Milner, A M

2014-09-15

In alpine regions climatic change will alter the balance between water sources (rainfall, ice-melt, snowmelt, and groundwater) for aquatic systems, particularly modifying the relative contributions of meltwater, groundwater and rain to both rivers and lakes. While these changes are expected to have implications for alpine aquatic ecosystems, little is known about potential ecological tipping points and associated indicator taxa. We examined changes in biotic communities along a gradient of glacier influence for two study systems: (1) a stream network in the French Pyrénées; and (2) a network of lakes in the Italian Alps, with the aim of identifying potential indicator taxa (macroinvertebrates and zooplankton) of glacier retreat in these environments. To assess parallels in biotic responses across streams and lakes, both primary data and findings from other publications were synthesised. Using TITAN (Threshold Indicator Taxa ANalysis) changes in community composition of river taxa were identified at thresholds of <5.1% glacier cover and <66.6% meltwater contribution. Below these thresholds the loss of cold stenothermic benthic invertebrate taxa, Diamesa spp. and the Pyrenean endemic Rhyacophila angelieri was apparent. Some generalist taxa including Protonemura sp., Perla grandis, Baetis alpinus, Rhithrogena loyolaea and Microspectra sp. increased when glacier cover was <2.7% and <52% meltwater. Patterns were not as distinct for the alpine lakes, due to fewer sampling sites; however, Daphnia longispina grp. and the benthic invertebrate groups Plectopera and Planaria were identified as potential indicator taxa. While further work is required to assess potential indicator taxa for alpine lake systems, findings from alpine river systems were consistent between methods for assessing glacier influence (meltwater contribution/glacier cover). Hence, it is clear that TITAN could become a useful management tool, enabling: (i) the identification of taxa particularly sensitive to glacier retreat; and (ii) conservation efforts/resources to be better directed in alpine aquatic systems. Copyright © 2014 Elsevier B.V. All rights reserved.

Risk Assessment and Mapping of Fecal Contamination in the Ohio River Basin

NASA Astrophysics Data System (ADS)

Cabezas, A.; Morehead, D.; Teklitz, A.; Yeghiazarian, L.

2014-12-01

Decisions in many problems in engineering planning are invariably made under conditions of uncertainty imposed by the inherent randomness of natural phenomena. Water quality is one such problem. For example, the leading cause of surface-water impairment in the US is fecal microbial contamination, which can potentially trigger massive outbreaks of gastrointestinal disease. It is well known that the difficulty in prediction of water contamination is rooted in the stochastic variability of microbes in the environment, and in the complexity of environmental systems.To address these issues, we employ a risk-based design format to compute the variability in microbial concentrations and the probability of exceeding the E. Coli target in the Ohio River Basin (ORB). This probability is then mapped onto the basin's stream network within the ArcGIS environment. We demonstrate how spatial risk maps can be used in support of watershed management decisions, in particular in the assessment of best management practices for reduction of E. Coli load in surface water. The modeling environment selected for the analysis is the Schematic Processor (SP), a suite of geoprocessing ArcGIS tools. SP operates on a schematic, link-and-node network model of the watershed. The National Hydrography Dataset (NHD) is used as the basis for this representation, as it provides the stream network, lakes, and catchment definitions. Given the schematic network of the watershed, SP adds the capability to perform mathematical computations along the links and at the nodes. This enables modeling fate and transport of any entity over the network. Data from various sources have been integrated for this analysis. Catchment boundaries, lake locations, the stream network and flow data have been retrieved from the NHDPlus. Land use data come from the National Land Cover Database (NLCD), and microbial observations data from the Ohio River Sanitation Committee. The latter dataset is a result of a 2003-2007 longitudinal study. Samples for E. coli analysis were collected approximately every five miles along the entire length of the Ohio River, with additional samples collected at the mouths of over 125 direct tributaries to the Ohio River.

Environmental occurrence of the enterococcal surface protein (esp) gene is an unreliable indicator of human fecal contamination

USGS Publications Warehouse

Byappanahalli, M.N.; Przybyla-Kelly, K.; Shively, D.A.; Whitman, R.L.

2008-01-01

The enterococcal surface protein (esp) gene found in Enterococcus faecalis and E. faecium has recently been explored as a marker of sewage pollution in recreational waters but its occurrence and distribution in environmental enterococci has not been well-documented. If the esp gene is found in environmental samples, there are potential implications for microbial source tracking applications. In the current study, a total of 452 samples (lake water, 100; stream water, 129; nearshore sand, 96; and backshore sand, 71; Cladophora sp. (Chlorophyta), 41; and periphyton (mostly Bacillariophyceae), 15) collected from the coastal watersheds of southern Lake Michigan were selectively cultured for enterococci and then analyzed for the esp gene by PCR, targeting E. faecalis/ E. faecium (espfs/fm) and E. faecium (espfm). Overall relative frequencies for espfs/fm and espfm were 27.4 and 5.1%. Respective percent frequency for the espfs/fm and espfm was 36 and 14% in lake water; 38.8 and 2.3% in stream water; 24 and 6.3% in nearshore sand; 0% in backshore sand; 24.4 and 0% in Cladophora sp.; and 33.3 and 0% in periphyton. The overall occurrence of both espfs/fm and espfm was significantly related (χ2 = 49, P espfs/fm increased in lake and stream water and nearshore sand. Further, E. coli and enterococci cell densities were significant predictors for espfs/fm occurrence in post-rain lake water, but espfm was not. F+ coliphage densities were not significant predictors for espfm or espfs/fm gene incidence. In summary, the differential occurrence of the esp gene in the environment suggests that it is not limited to human fecal sources and thus may weaken its use as a reliable tool in discriminating contaminant sources (i.e., human vs nonhuman).

qPCR (quantitative polymerase chain reaction) for the quantification of bacteriophages in stream water samples to investigate hydrological processes: a proof-of-concept study in the Huewelerbach experimental catchment (Luxembourg)

NASA Astrophysics Data System (ADS)

Antonelli, Marta; Narayanan Balasubramanian, Mukundh; Ogorzaly, Leslie; Pfister, Laurent

2016-04-01

Albeit recent technological developments (e.g. field deployable instruments operating at high temporal frequencies), experimental hydrology is a discipline that remains measurement limited. From this perspective, trans-disciplinary approaches may create valuable opportunities to enlarge the amount of tools available for investigating hydrological processes. Bacteriophages have been widely used in hydrology as biological tracer for investigating colloid transport and contamination of ground water systems. However, there are only a few studies focusing on the employability of bacteriophages as surface water tracers (i.e. phage transport, system functioning). Here, we present a proof-of-concept study carried out in the Huewelerbach catchment in Luxembourg in December 2015. The aim of this study was to investigate how viral particles can be used to detect hydrological connectivity between the riparian zone/river bank and the stream during rainfall events. Moreover, this study is one of the first attempts for applying the qPCR (quantitative polymerase chain reaction) technique for the quantification of bacteriophages in stream water samples to investigate hydrological processes. This technique is very sensitive and has a large dynamic range - enhancing ease and speed of phage detection. We used two different male-specific coliphages (GA phage, genogroup II and SP phage, genogroup IV). Two litres of GA phage were injected directly in the stream as a slug injection and two litres of SP phage were poured next to the river bank (alluvial deposition) close to the injection point. We also added NaCl (200 g) to both phage suspensions. We collected stream water samples 100 m and 500 m downstream (i.e. catchment outlet) of the injection point for one week. Phages were concentrated through ultracentrifugation of 100 ml of water sample followed by quantification via qPCR. Conductivity in stream water was monitored for the entire duration of the experiment. Discharge was monitored both immediately upstream of the injection point and at the catchment outlet. Preliminary results show that at the catchment outlet, the GA-phage injected in stream displayed almost complete mass recovery (~93 %), in contrast to the partial recovery (~12%) of the SP phage that was introduced on the river bank. Additionally, the amount of GA phages detected 100 m downstream of the injection point evolved back to its background level after six days. We could not observe a similar evolution for the SP phage. At the outlet, the amount of both phages did not return to background levels after six days. This can be due to a combined action of the occurrence of preferential flowpaths and the behaviour of colloids. During the monitored rain event we observed a dilution effect on both phages and a slight increase of the quantity of SP phage right after the peak of discharge. This finding suggests a release of viral particles from the river bank. Overall, we have demonstrated with this proof-of-concept study the value of phages as eco-hydrological tracer.

SP Response to a Line Source Infiltration for Characterizing the Vadose Zone: Forward Modeling and Inversion

NASA Astrophysics Data System (ADS)

Sailhac, P.

2004-05-01

Field estimation of soil water flux has direct application for water resource management. Standard hydrologic methods like tensiometry or TDR are often difficult to apply because of the heterogeneity of the subsurface, and non invasive tools like ERT, NMR or GPR are limited to the estimation of the water content. Electrical Streaming Potential (SP) monitoring can provide a cost-effective tool to help estimate the nature of the hydraulic transfers (infiltration or evaporation) in the vadose zone. Indeed this technique has improved during the last decade and has been shown to be a useful tool for quantitative groundwater flow characterization (see the poster of Marquis et al. for a review). We now account for our latest development on the possibility of using SP for estimating hydraulic parameters of unsaturated soils from in situ SP measurements during infiltration experiments. The proposed method consists in SP profiling perpendicularly to a line source of steady-state infiltration. Analytic expressions for the forward modeling show a sensitivity to six parameters: the electrokinetic coupling parameter at saturation CS, the soil sorptive number α , the ratio of the constant source strength to the hydraulic conductivity at saturation q/KS, the soil effective water saturation prior to the infiltration experiment Se0, Mualem parameter m, and Archie law exponent n. In applications, all these parameters could be constrained by inverting electrokinetic data obtained during a series of infiltration experiments with varying source strength q.

Draft Genome Sequence of Micrococcus sp. Strain MS-AsIII-49, an Arsenate-Reducing Isolate from Tropical Metal-Rich Sediment

PubMed Central

Costa, Patrícia S.; Tschoeke, Diogo A.; Silva, Bruno S. O.; Thompson, Fabiano; Reis, Mariana P.; Chartone-Souza, Edmar

2015-01-01

Micrococcus sp. strain MS-AsIII-49, which was isolated from a tropical metal-polluted stream sediment in Brazil, has the ability to reduce AsV to AsIII. Analysis of its draft genome revealed 186 contigs with a total size of 2,440,924 bp encoding several metal resistance genes. PMID:25883272

Finite element modeling of self-potential signals over conduits and fractures in covered karst terrain Peter Bumpus and Sarah Kruse

NASA Astrophysics Data System (ADS)

Bumpus, P. B.; Kruse, S. E.

2013-12-01

A year of continuous monitoring with two grids of 12-15 electrodes each measured self-potential (SP) over two small covered-karst conduits in Tampa, Florida. Positive and negative SP anomalies episodically manifested over conduits, suggesting that conduit flow is dynamic, not static. Various SP flow regimes in the conduits are postulated: flow in the conduit is faster than through surrounding surficial sediment, flow in the conduit is slower than through surrounding sediment, and conduit flow rates match those through the surrounding sediments. It is further postulated that conduits change permeability with inflow and washing out of sediment, especially associated with rain events. Numerical simulations of the postulated flow regimes were run with 2D simulations using the Comsol finite element modeling code. Simulations show that each regime produces different SP patterns. Models simulate the Tampa field setting in which a 1-2 meter-thick high permeability sand layer overlies a low-permeability clay-rich layer. A funnel-shaped conduit breaches both layers. In the models, when the permeability of the conduit sands is equal to surrounding surficial sands, a small (several mV) negative anomaly manifests locally at the conduit. This negative anomaly can be explained as the result of the depression of the SPS surface (the first sediment surface with a change in conductance or streaming potential coefficient) in the conduit. However a permeability difference of as little as 5 to 20 percent between conduit and background can cause an SP anomaly of tens to several hundred millivolts, either positive or negative. When the permeability is higher in the conduit than the surficial sands, lateral flow into the conduit within the sand layer and through the conduit to the underlying aquifer are both high, and the SP signal over the conduit is positive. This may contradict the concept exemplified in other studies that downward flow creates a negative anomaly. In our case the positive voltage is the result of high lateral flow toward a high flux conduit. As a result, the horizontal dimension of the conduit plays a role in whether a positive or negative anomaly is observed locally near the surface, depending on the degree to which the terminus of the inward lateral flow affects voltage over the conduit center. When the conduit has lower permeability than surrounding surficial sediment, models show that the SP anomaly is negative. In this case lateral flow is small to a low-flux conduit and there is little build-up of positive SP to overcome the negative potential associated with the SPS trough.

Implementation of artificial neural networks (ANNs) to analysis of inter-taxa communities of benthic microorganisms and macroinvertebrates in a polluted stream.

PubMed

Kim, Byunghyuk; Lee, Se-Eun; Song, Mi-Young; Choi, Jung-Hye; Ahn, Soon-Mo; Lee, Kun-Seop; Cho, Eungchun; Chon, Tae-Soo; Koh, Sung-Cheol

2008-02-01

This study was performed to gain an understanding of the structural and functional relationships between inter-taxa communities (macroinvertebrates as consumers, and microbes as decomposers or preys for the invertebrates) in a polluted stream using artificial neural networks techniques. Sediment samples, carrying microorganisms (eubacteria) and macroinvertebrates, were seasonally collected from similar habitats in streams with different levels of pollution. Microbial community taxa and densities were determined using polymerase chain reaction-denaturing gradient gel electrophoresis (PCR-DGGE) and 16S rDNA sequence analysis techniques. The identity and density of macroinvertebrates were concurrently determined. In general, differences were observed on grouping by self-organizing map (SOM) in polluted, clean and recovering sites based on the microbial densities, while the community patterns were partly dependent on the sampling period. A Spearman rank order correlation analysis revealed correlations of several eubacterial species with those of macroinvertebrates: a negative correlation was observed between Acidovorax sp. (from polluted sites) and Gammaridae (mostly from the clean site), while Herbaspirillum sp. and Janthinobacterium sp. appeared to have positive correlations with some macroinvertebrate species. The population dynamics of the tolerant texa, Tubificidae and Chironomidae, appeared to be related with changes in the densities of Acidovorax sp. This study revealed community relationships between macroinvertebrates and microorganisms, reflecting the connectivity between the two communities via the food chain. A further physio-ecological and symbiological study on the invertebrate-microorganism relationships will be required to understand the degradation and utilization of detritus in aquatic ecosystems as well as to elucidate the roles of the inter-taxa in the recovery of polluted aquatic environments.

Description of Ambrosiozyma oregonensis sp. nov., and reassignment of Candida species of the Ambrosiozyma clade to Ambrosiozyma kashinagacola f.a., comb. nov., Ambrosiozyma llanquihuensis f.a., comb. nov., etc.

USDA-ARS?s Scientific Manuscript database

Ambrosiozyma oregonensis sp. nov. (NRRL Y-6106T = CBS 5560, type strain) is described from two strains, one isolated from a mountain stream in Oregon, USA, and a second (NRRL YB-4169) from an unknown substrate from Marion, Illinois, USA. The species forms four hat-shaped ascospores in each deliquesc...

Comparing solute and particulate transport in streams using Notre Dame Linked Experimental Ecosystem Facility (ND-LEEF)

NASA Astrophysics Data System (ADS)

Shogren, A.; Tank, J. L.; Aubeneau, A. F.; Bolster, D.

2016-12-01

in streams and rivers. These processes co-vary across systems and are thus difficult to isolate. Therefore, to improve our understanding of drivers of fine-scale transport and retention of particles and solutes in streams, we experimentally compared transport and retention dynamics of two different particles (brewers yeast, 7μm; corn pollen, 70μm), a non-reactive solute (RhodamineWT), and a biologically reactive solute, nitrate (NO3-). We conducted experiments in four semi-natural constructed streams at the Notre Dame Linked Ecosystem Experimental Facility (ND-LEEF) in South Bend, Indiana. Each of the four 50 m replicate stream was lined with a unique configuration of substrate: pea gravel (PG, D50 = 0.5cm) and cobble (COB, D50 = 5cm) and structural complexity: alternating 2m sections of PG and COB substrates (ALT) and a random 50/50 mix (MIX). We allowed the experimental streams to naturally colonize with biofilm and periphyton throughout the summer sampling season. For particles, we estimated transport distance (Sp) and deposition velocity (vdep) and for solutes, we estimated uptake lengths (Sw) and uptake velocity (vf) using a short-term pulse addition technique. Sp and vdep were variable for particles, and were most strongly predicted by biofilm colonization on substrata in each stream. Biofilm accumulation also increased uptake of the reactive solute, though in contrast to particles, there were no significant differences in Sw or vf among streams suggesting that substrate type was not the main driver of reactive solute retention. These results emphasize the dynamic relationship between the physical and biological drivers influencing particle and solute retention in streams. Differential uptake of particles and solutes highlights the non stationarity of controlling variables along spatial or temporal continua. Even in highly controlled systems like those at ND-LEEF, physical vs. biological drivers are difficult to isolate.

The Effect of Atmospheric Diabatic Heating on Low-Frequency Oscillations.

NASA Astrophysics Data System (ADS)

Yen, Ming-Cheng

1990-01-01

A diagnostic scheme is devised to illustrate a chain relationship between diabatic heating and planetary -scale divergent and rotational circulations. The scheme consists of the velocity-potential (chi) maintenance equation, which relates diabatic heating and velocity potential, and the streamfunction (psi ) budget equation, which depicts the streamfunction tendency caused by the imbalance between streamfunction tendencies induced by vorticity advection and source. The proposed scheme is employed to examine the effect of tropical diabatic heating on the annual variation of subtropical jet streams. Furthermore, the chi -maintenance analysis is used to examine how the 30-60 day oscillation of planetary-scale divergent circulation is maintained; and the psi-budget analysis is performed to illustrate how the 30-60 day velocity potential (~{chi}) mode interacts with the upper-level monsoon flow to induce the 30-60 day oscillation of the tropical easterly jet. It was found that annual variations of both tropical diabatic heating and planetary-scale divergent circulation exhibit an annual in-phase seesaw oscillation between the winter and summer hemispheres. The annual variation of subtropical jet streams is caused by the adjustment of atmospheric rotational flow through planetary-scale divergent circulation in response to the annual cycle of tropical diabatic heating. The chi-maintenance equation is expressed as chi = chi _sp{rm Q}{.} - chi_{rm HA} , where chi_sp{rm Q}{.} and chi_ {rm HA} are the effects of vertical differential diabatic and adiabatic heating, respectively. The 30-60 day chi oscillation is shown to be primarily maintained by the differential diabatic heating effect, which can be inferred from the H _{rm VD} anomalies, the Laplician of the filtered chi_sp{rm Q}{.} anomalies. The resemblance of the H_{rm VD} and OLR anomalies in terms of the geographic distributions indicates that the differential diabatic heating effect maintaining the 30-60 day chi oscillation is attributable to the latent heat released by cumulus convection. The synoptic relationship among (~ {chi}, nabla~ {chi}) (200 mb), OLR and ~{psi} (200 mb) makes clear the synchronization of the 30-60 day oscillation of the tropical easterly jet and the Somali jet. The significant outcome of the psi-budget analysis demonstrates that the 30-60 day oscillation of the southern part of the tropical easterly jet is a response of the upper-level monsoon circulation to the eastward propagating ~{chi} mode.

Application of a constructed wetland system for polluted stream remediation

NASA Astrophysics Data System (ADS)

Tu, Y. T.; Chiang, P. C.; Yang, J.; Chen, S. H.; Kao, C. M.

2014-03-01

In 2010, the multi-function Kaoping River Rail Bridge Constructed Wetland (KRRBW) was constructed to improve the stream water quality and rehabilitate the ecosystem of the surrounding environment of Dashu Region, Kaohsiung, Taiwan. The KRRBW consists of five wetland basins with a total water surface area of 15 ha, a total hydraulic retention time (HRT) of 10.1 days at a averaged flow rate of 14 740 m3/day, and an averaged water depth of 1.1 m. The influent of KRRBW coming from the local drainage systems containing untreated domestic, agricultural, and industrial wastewaters. Based on the quarterly investigation results of water samples taken in 2011-2012, the overall removal efficiencies were 91% for biochemical oxygen demand (BOD), 75% for total nitrogen (TN), 96% for total phosphorus (TP), and 99% for total coliforms (TC). The calculated first-order decay rates for BOD, TN, TP, NH3-N, and TC ranged from 0.14 (TN) to 0.42 (TC) 1/day. This indicates that the KRRBW was able to remove organics, TC, and nutrients effectively. The high ammonia/nitrate removal efficiency indicates that nitrification and denitrification processes occurred simultaneously in the wetland system, and the detected nitrite concentration confirmed the occurrence of denitrification/nitrification. Results from sediment analyses reveal that the sediment contained high concentrations of organics (sediment oxygen demand = 1.9-5.2 g O2/m2 day), nutrients (up to 15.8 g total nitrogen/kg of sediment and 1.48 g total phosphorus/kg of sediment), and metals (up to 547 mg/kg of Zn and 97 mg/kg of Cu). Appropriate wetland management strategies need to be developed to prevent the release of contaminants into the wetland system. The wetland system caused the variations in the microbial diversities and dominant microbial bacteria. Results show the dominant nitrogen utilization bacteria including Denitratisoma oestradiolicum, Nitrosospira sp., Nitrosovibrio sp., D. oestradiolicum, Alcaligenes sp., Steroidobacter denitrificans, Hydrocarboniphaga effuse were responsible for nitrogen removal, and the dominant carbon degrading bacteria (Stenotrophomonas maltophilia, H. effuse, Alcaligenes sp., Pseudomonas sp., Fusibacter sp., Chlofoflexi, Guggenheimella bovis, Bacillus pumilus) were responsible for carbon reduction. The denaturing gradient gel electrophoresis (DGGE) and nucleotide sequence techniques provide a guide for microbial ecology evaluation, which can be used as an indication of contaminants removal. Results from this study show that constructed wetlands have the potential to be developed into an environmentally acceptable river water quality improvement and wastewater polishment alternative for practical application.

Solute load concentrations in some streams in the Upper Osun and Owena drainage basins, central western Nigeria

NASA Astrophysics Data System (ADS)

Jeje, L. K.; Ogunkoya, O. O.; Oluwatimilehin, J. M.

1999-12-01

The solute load dynamics of 12 third-order streams in central western Nigeria are presented, during storm and non-storm runoff events. The relevance of the Walling and Foster model for explaining storm period solute load dynamics in the humid tropical environment was assessed and it was found that this model was generally applicable to the study area. Exceptions appear to be streams draining settlements and/or farms where fertilizers are applied heavily. The solute load ranged from 5 mg l -1 to 580 mg l -1 with streams draining basins with tree-crop plantations ( Theobroma cacao, Cola sp.) as the dominant land cover having the highest solute load.

Evidence of Niche Partitioning under Ontogenetic Influences among Three Morphologically Similar Siluriformes in Small Subtropical Streams

PubMed Central

Bonato, Karine Orlandi; Fialho, Clarice Bernhardt

2014-01-01

Ontogenetic influences in patterns of niche breadth and feeding overlap were investigated in three species of Siluriformes (Heptapterus sp., Rhamdia quelen and Trichomycterus poikilos) aiming at understanding the species coexistence. Samplings were conducted bimonthly by electrofishing technique from June/2012 to June/2013 in ten streams of the northwestern state of Rio Grande do Sul, Brazil. The stomach contents of 1,948 individuals were analyzed by volumetric method, with 59 food items identified. In general Heptapterus sp. consumed a high proportion of Aegla sp., terrestrial plant remains and Megaloptera; R. quelen consumed fish, and Oligochaeta, followed by Aegla sp.; while the diet of T. poikilos was based on Simuliidae, Ephemeroptera and Trichoptera. Specie segregation was observed in the NMDS. Through PERMANOVA analysis feeding differences among species, and between a combination of species plus size classes were observed. IndVal showed which items were indicators of these differences. Niche breadth values were high for all species. The niche breadth values were low only for the larger size of R. quelen and Heptapterus sp. while T. poikilos values were more similar. Overall the species were a low feeding overlap values. The higher frequency of high feeding overlap was observed for interaction between Heptapterus sp. and T. poikilos. The null model confirmed the niche partitioning between the species. The higher frequency of high and intermediate feeding overlap values were reported to smaller size classes. The null model showed resource sharing between the species/size class. Therefore, overall species showed a resource partitioning because of the use of occasional items. However, these species share resources mainly in the early ontogenetic stages until the emphasized change of morphological characteristics leading to trophic niche expansion and the apparent segregation observed. PMID:25340614

Simulating stream response to floodplain connectivity, reforestation and wetland restoration from reach to catchment scales

NASA Astrophysics Data System (ADS)

Singh, N.; Bomblies, A.; Wemple, B. C.; Ricketts, T.

2017-12-01

Natural infrastructure (e.g., floodplains, forests) can offer multiple ecosystem services (ES), including flood resilience and water quality improvement. In order to maintain these ES, state, federal and non-profit organizations may consider various interventions, such as increased floodplain connectivity, reforestation, and wetland restoration to minimize flood peaks and erosion during events. However, the effect of these interventions on hydro-geomorphic responses of streams from reach to catchment scales (>100 km2) are rarely quantified. We used stream geomorphic assessment datasets with a hydraulic model to investigate the influence of above mentioned interventions on stream power (SP), water depth (WD) and channel velocity (VEL) during floods of 2yr and 100yr return periods for three catchments in the Lake Champlain basin, Vermont. To simulate the effect of forests and wetlands, we changed the Manning's coefficient in the model, and to simulate the increased connectivity of the floodplain, we edited the LIDAR data to lower bank elevations. We find that the wetland scenario resulted in the greatest decline in WD and SP, whereas forested scenario exhibited maximum reduction in VEL. The connectivity scenario showed a decline in almost all stream responses, but the magnitude of change was relatively smaller. On average, 35% (2yr) and 50% (100yr) of altered reaches demonstrated improvement over baseline, and 39% (2yr) and 31% (100yr) of altered reaches showed degradation over baseline, across all interventions. We also noted changes in stream response along unaltered reaches (>30%), where we did not make interventions. Overall, these results point to the complexity related to stream interventions and suggest careful evaluation of spatially explicit tradeoffs of these interventions on river-floodplain ecosystem. The proposed approach of simulating and understanding stream's response to interventions, prior to the implementation of restoration activities, may lead to more effective and efficient management of rivers.

Five new, microendemic Asian Leaf-litter Frogs (Leptolalax) from the southern Annamite mountains, Vietnam.

PubMed

Rowley, Jodi J L; Tran, Dao T A; Le, Duong T T; Dau, Vinh Q; Peloso, Pedro L V; Nguyen, Truong Q; Hoang, Huy D; Nguyen, Tao T; Ziegler, Thomas

2016-03-01

The Leptolalax applebyi group of Asian leaf-litter frogs currently comprises four species of particularly small-bodied (<40 mm SVL) species distributed in the Central Highlands of Vietnam and northeastern Cambodia. In addition to their small size, the group is characterized by their morphological and genetic similarities, as well as their breeding habitat at headwaters of small mountain streams and seeps. A recent study suggested that at least two-thirds of the diversity of the group remained hidden within morphologically cryptic lineages. We expand upon the molecular, morphometric, and acoustic data and formally delineate and describe five of these lineages as distinct species: Leptolalax ardens sp. nov., Leptolalax kalonensis sp. nov., Leptolalax pallidus sp. nov., Leptolalax maculosus sp. nov., and Leptolalax tadungensis sp. nov. Due to habitat loss, the current ranges of these species are likely to be a fraction of their historical extent and under continued threat from deforestation.

Contribution to the knowledge of Stenochironomus Kieffer (Diptera, Chironomidae) from Brazil: seven new species and description of females and immatures of some previously known species.

PubMed

Dantas, Galileu P S; Hamada, Neusa; Mendes, Humberto F

2016-05-30

Twenty two species of Stenochironomus Kieffer are known from Brazil, 19 of which occur in the Amazon region. In order to increase knowledge of the taxonomy of this genus in the Amazon region, collections were carried out in streams located in Presidente Figueiredo, Manaus and Itacoatiara municipalities, Amazonas State. Leaves and wood mined by Stenochironomus larvae were collected and transported to the laboratory where they were kept until adult emergence. Seven new species were found, one of which is described in the immature stages and as adults of both sexes (S. amazonicus sp. n.), one as immatures and adult male (S. liviae sp. n.), four as male and pupa (S. bare sp. n., S. figueiredoensis sp. n., S. gracilis sp. nov. and S. manauara sp. n.) and one only as male (S. suzanae sp. n.). Additionally, the female, pupa and larva of S. impendens Borkent, pupa and larva of S. jubatus Borkent, female and pupa of S. zonarius Borkent and female of S. palliaculeatus Borkent were described.

Response of benthic algae to environmental gradients in an agriculturally dominated landscape

USGS Publications Warehouse

Munn, M.D.; Black, R.W.; Gruber, S.J.

2002-01-01

Benthic algal communities were assessed in an agriculturally dominated landscape in the Central Columbia Plateau, Washington, to determine which environmental variables best explained species distributions, and whether algae species optima models were useful in predicting specific water-quality parameters. Land uses in the study area included forest, range, urban, and agriculture. Most of the streams in this region can be characterized as open-channel systems influenced by intensive dryland (nonirrigated) and irrigated agriculture. Algal communities in forested streams were dominated by blue-green algae, with communities in urban and range streams dominated by diatoms. The predominance of either blue-greens or diatoms in agricultural streams varied greatly depending on the specific site. Canonical correspondence analysis (CCA) indicated a strong gradient effect of several key environmental variables on benthic algal community composition. Conductivity and % agriculture were the dominant explanatory variables when all sites (n = 24) were included in the CCA; water velocity replaced conductivity when the CCA included only agricultural and urban sites. Other significant explanatory variables included dissolved inorganic nitrogen (DIN), orthophosphate (OP), discharge, and precipitation. Regression and calibration models accurately predicted conductivity based on benthic algal communities, with OP having slightly lower predictability. The model for DIN was poor, and therefore may be less useful in this system. Thirty-four algal taxa were identified as potential indicators of conductivity and nutrient conditions, with most indicators being diatoms except for the blue-greens Anabaenasp. and Lyngbya sp.

Assessment of pesticides removal using two-stage Integrated Aerobic Treatment Plant (IATP) by Bacillus sp. isolated from agricultural field.

PubMed

Geed, S R; Shrirame, B S; Singh, R S; Rai, B N

2017-10-01

The biodegradation of synthetic wastewater containing Atrazine, Malathion and Parathion was studied in two stage Integrated Aerobic Treatment Plant using Bacillus sp. (consortia) isolated from agricultural field. The influent stream containing these pesticides with initial COD of 1232mg/L were fed to first reactor and treated effluent of first reactor was fed to second reactor. The maximum removal of pesticides in IATP was found to be greater than 90%. The various process parameters such as pH, DO, Redox potential and BOD 5 /COD were monitored during the treatment. The degradation of pesticides and its metabolites in the treated effluent were confirmed by GC-MS. Kinetic parameters such as first order rate constant (K obs ), cell yield (Y X/C ) and decay coefficients (K dp ) were evaluated and found to be 0.00425 per hr, 0.696mg of COD/mg MLSS and 0.0010 per hr respectively. This integrated process was found more effective than physico-chemical treatment of pesticides. Copyright © 2017 Elsevier Ltd. All rights reserved.

Revision of the Neotropical water scavenger beetle genus Tobochares Short & García, 2007 (Coleoptera, Hydrophilidae, Acidocerinae)

PubMed Central

Kohlenberg, Alex T.; Short, Andrew Edward Z.

2017-01-01

Abstract The genus Tobochares Short & García, 2007 is revised. A combination of morphological and molecular data provide support for ten distinct species. Five new species are described: T. canaliculatus sp. n. (Venezuela), T. canthus sp. n. (Venezuela), T. emarginatus sp. n. (Suriname), T. kusad sp. n. (Guyana), and T. pallidus sp. n. (Venezuela). All four preexisting species are redescribed. A tenth species, known from a single female from Venezuela, is left undescribed pending the collection of additional specimens. New collecting records are provided for T. sulcatus Short & García, 2007 and T. kasikasima Short, 2013. Tobochares sipaliwini Short & Kadosoe, 2011 is newly recorded from Guyana. All species are associated with seepage or wet rock habitats, although some species have also been found along the margins of streams that flow over rocky substrates. High-resolution images including scanning electron micrographs are provided, as well as a key to species and habitat photographs. PMID:28769656

Self-potential method for characterizing streaming flows in the saturated and vadose zones: state of the art and limitations

NASA Astrophysics Data System (ADS)

Sailhac, P.

2005-12-01

Self-Potential (SP) method is sensitive not only to the water content, but, above all, to flow velocities within the underground porous medium. So it can be considered as a crucial help in hydrogeophysics. This is underlined by the so-called electrokinetic coupling and has been early used in geophysics (e.g. Bogoslovsky and Ogilvy, 1970) and hydrology (Abaza and Clyde 1969). During the last decade, both experimental and theoretical progresses have moved ahead SP to provide quantitative flow parameters. Now SP time and/or spatial variations can be used to monitor water fluxes during infiltration (e.g. Thony et al. 1997, Doussan et al. 2002, Darnet & Marquis 2004), seepage (Titov et al. 2000), or pumping (e.g. Fagerlund & Heinson 2003, Darnet et al. 2003, Revil et al. 2003). In order that SP is used by a larger community, it would be useful to recall the fundamentals, to review recent interpretation techniques in a simple framework and to precise their limitations. First considering flows in the saturated zone and a pumping experiment, I will show different interpretation techniques that are based upon Green function decompositions (e.g. wavelets, COP tomography of Patella, and iso-α line of Revil et al.). Classical application of theses techniques is underlined by the assumption of a constant electrical conductivity medium that involves uncertainty and bias in quantitative flow parameter estimates. For instance, the diffusive effect of a conductive shallow layer tends to increase the apparent depth of an underground flow source or sink. To correct this problem, one can use Green functions of a tabular medium in the COP tomography. In the complex case of unsaturated zone, the hydraulic and electric conductivities are depending on the water content. We will discuss on different soil models and different experiments that can be used for the monitoring of the infiltration and the characterisation of the soil hydraulic parameters.

Geophysical evaluation of the Success Dam foundation, Porterville, California

USGS Publications Warehouse

Hunter, L.E.; Powers, M.H.; Haines, S.; Asch, T.; Burton, B.L.; Serafini, D.C.

2006-01-01

Success Dam is a zonedearth fill embankment located near Porterville, CA. Studies of Success Dam by the recent Dam Safety Assurance Program (DSAP) have demonstrated the potential for seismic instability and large deformation of the dam due to relatively low levels of earthquake shaking. The U.S. Army Corps of Engineers conducted several phases of investigations to determine the properties of the dam and its underlying foundation. Detailed engineering studies have been applied using a large number of analytical techniques to estimate the response of the dam and foundation system when subjected to earthquake loading. Although a large amount of data have been acquired, most are 'point' data from borings and results have to be extrapolated between the borings. Geophysical techniques were applied to image the subsurface to provide a better understanding of the spatial distribution of key units that potentially impact the stability. Geophysical investigations employing seismic refraction tomography, direct current (DC) resistivity, audio magnetotellurics (AMT) and self-potential (SP) were conducted across the location of the foundation of a new dam proposed to replace the existing one. Depth to bedrock and the occurrence of beds potentially susceptible to liquefaction were the focus of the investigations. Seismic refraction tomography offers a deep investigation of the foundation region and looks at compressional and shear properties of the material. Whereas resistivity surveys determines conductivity relationships in the shallow subsurface and can produce a relatively high-resolution image of geological units with different electrical properties. AMT was applied because it has the potential to look considerably deeper than the other methods, is useful for confirming depth to bedrock, and can be useful in identifying deep seated faults. SP is a passive electrical method that measures the electrical streaming potential in the subsurface that responds to the movement of ground water. SP surveys were conducted at low pool and high pool conditions in order to look for evidence of seepage below the existing dam. In this paper, we summarize these techniques, present their results at Success Dam, and discuss general application of these techniques for investigating dams and their foundations.

Contaminants as habitat disturbers: PAH-driven drift by Andean paramo stream insects.

PubMed

Araújo, Cristiano V M; Moreira-Santos, Matilde; Sousa, José P; Ochoa-Herrera, Valeria; Encalada, Andrea C; Ribeiro, Rui

2014-10-01

Contaminants can behave as toxicants, when toxic effects are observed in organisms, as well as habitat disturbers and fragmentors, by triggering avoidance responses and generating less- or uninhabited zones. Drift by stream insects has long been considered a mechanism to avoid contamination by moving to most favorable habitats. Given that exploration and transportation of crude oil represent a threat for surrounding ecosystems, the key goal of the present study was to assess the ability of autochthonous groups of aquatic insects from the Ecuadorian paramo streams to avoid by drift different concentrations of polycyclic aromatic hydrocarbons (PAH) contained in the soluble fraction of locally transported crude oil. In the laboratory, different groups of insects were exposed to PAH for 12h. Three different assays, which varied in taxa and origin of the organisms, concentrations of PAH (0.6-38.8µgL(-1)), and environment settings (different levels of refuge and flow) were performed. For Anomalocosmoecus palugillensis (Limnephilidae), drift was a major cause of population decline in low concentration treatments but at higher concentrations mortality dominated. PAH was highly lethal, even at lower concentrations, for Chironomidae, Grypopterygidae (Claudioperla sp.) and Hydrobiosidae (Atopsyche sp.), and, therefore, no conclusion about drift can be drawn for these insects. Contamination by PAH showed to be a threat for benthic aquatic insects from Ecuadorian paramo streams as it can cause a population decline due to avoidance by drift and mortality. Copyright © 2014 Elsevier Inc. All rights reserved.

Production dynamics and life cycle of dominant chironomids (diptera, chironomidae) in a subtropical stream in China: adaptation to variable flow conditions in summer and autumn

NASA Astrophysics Data System (ADS)

Yan, Yunjun; Li, Xiaoyu

2007-07-01

The production dynamics and trophic basis of 7 dominant species of chironomids were investigated in the area of a second-order river of the Hanjiang River basin, in central China from June 2003 to June 2004. The results showed that Tvetenia discoloripes was by far the most abundant chironomid, dominating the overall standing stock of the taxa. In terms of lif ecycle, Chaetocladius sp., Eukiefferiella potthasti and T. discoloripes developed 1 generation a year, whereas Microtendipes sp. and Pagastia sp. developed two, while Pentaneura sp. and Polypedilum sp. developed three. T. discoloripes was the most productive chironomid with 120.305 8 g/m2. a, Pentaneura sp. and E. potthasti had relatively high production values of >17 g/m2.a, and the rest were <10 g/m2.a. All the production temporal variation tended to follow biomass patterns. T. discoloripes, Chaetocladius sp. and Pagastia sp. concentrated most of their production in winter, whereas E. potthasti, Pentaneura sp. and Polypedilum sp. had relatively higher production throughout the year. Only Microtendipes sp. had a production that peaked in summer. The overlap in temporal distribution of production among the chironomid species was generally high (>0.5), especially for filter-collectors Microtendipes sp., Chaetocladius sp., Chaetocladius sp., T. discoloripes and Pagastia sp. All species except Pentaneura sp. consumed a large portion of amorphous detritus, constituting more than 90% of their diets, and contributing nearly 90% to their secondary production. All the 7 chironomids represent obvious adaptation to local highly variable climate in summer and autumn in life cycle pattern, production dynamics, and food type.

New species and records of Oukuriella Epler, 1986 from the Neotropical region (Diptera: Chironomidae).

PubMed

Bellodi, Carolina Ferraz; Fusari, Lívia Maria; Roque, Fabio De Oliveira

2016-02-09

Two new species of Oukuriella, O. angelomachadoi sp. nov. (Holotype male deposited in MZUSP: BRAZIL, Paraná State) and O. plumaterata sp. nov. (Holotype male deposited in MZUSP: BRAZIL, São Paulo State), and the immatures stages of O. sublettei are described and figured. The larvae of O. sublettei were collected from submerged woods in low-order streams in the Atlantic Forest. In addition new records of several described species, including the first records of Oukuriella from Mexico and Bolivia are given.

Integration of Membrane Distillation with solar photo-Fenton for purification of water contaminated with Bacillus sp. and Clostridium sp. spores.

PubMed

Ruiz-Aguirre, A; Polo-López, M I; Fernández-Ibáñez, P; Zaragoza, G

2017-10-01

Although Membrane Distillation (MD) has been extensively studied for desalination, it has other applications like removing all kinds of solutes from water and concentrating non-volatile substances. MD offers the possibility of producing a clean stream while concentrating valuable compounds from waste streams towards their recovery, or emerging contaminants and pathogens present in wastewater in order to facilitate their chemical elimination. This paper analyses the elimination of bacterial spores from contaminated water with MD and the role of MD in the subsequent treatment of the concentrate with photo-Fenton process. The experiments were performed at Plataforma Solar de Almería (PSA) using a plate and frame bench module with a Permeate Gap Membrane Distillation (PGMD) configuration. Tests were done for two different kinds of spores in two different water matrixes: distilled water with 3.5wt% of sea salts contaminated with spores of Bacillus subtilis (B. subtilis) and wastewater after a secondary treatment and still contaminated with Clostridium sp. spores. An analysis of the permeate was performed in all cases to determine its purity, as well as the concentrated stream and its further treatment in order to assess the benefits of using MD. Results showed a permeate free of spores in all the cases, demonstrating the viability of MD to treat biological contaminated wastewater for further use in agriculture. Moreover, the results obtained after treating the concentrate with photo-Fenton showed a shorter treatment time for the reduction of the spore concentration in the water than that when only photo-Fenton was used. Copyright © 2017 Elsevier B.V. All rights reserved.

Effects of irradiation on fungi and fumonisin B(1) in corn, and of microwave-popping on fumonisins in popcorn.

PubMed

D'Ovidio, K L; Trucksess, M W; Devries, J W; Bean, G

2007-07-01

Fumonisins are metabolites produced in corn primarily by the fungus Fusarium verticillioides (F. moniliforme) and are toxic to humans and animals. Fumonisin B(1) (FB(1)) is the primary fumonisin produced and is found frequently in corn kernels, some of which may be used as food or food ingredients. A three-part study was conducted to determine the effects of gamma- and electron beam irradiation on the levels of fumonisins in naturally contaminated field corn, and the effects of microwave-popping on fumonisins in selected, naturally contaminated popcorn. To date, no effective means have been found to reduce consistently mycotoxin levels once foods are contaminated. Aqueous solutions of FB(1) at various concentrations, samples of whole corn, and samples of ground corn containing known levels of FB(1) were irradiated with various levels of cobalt and electron beam irradiation. Popcorn samples, taken from the reject streams of popcorn processing, were popped using normal microwave-popping conditions. FB(1) in aqueous solutions was reduced by 99.7% using a minimal level of irradiation (0.5 kGray). Gamma- and electron beam irradiation did not significantly reduce levels of FB(1) in whole and ground corn. Aspergillus sp., Penicillium sp. and Fusarium sp. fungi were totally eliminated at 30 kGray in ground corn and at 100 kGray in whole corn. The normal commercial cleaning processes for microwave popcorn before packaging reduced fumonisins to <0.03 microg g(-1) for the cleaned product stream. Microwave popping of popcorn from reject streams of the cleaning operation that contained fumonisins resulted in significant reduction of the mould toxin.

Stictonectes abellani sp. n. (Coleoptera: Dytiscidae: Hydroporinae) from the Iberian Peninsula, with notes on the phylogeny, ecology and distribution of the Iberian species of the genus.

PubMed

Millán, Andrés; Picazo, Félix; Fery, Hans; Moreno, José Luis; Sánchez-Fernández, David

2013-12-09

Stictonectes abellani sp. n. is described from the Iberian Peninsula. On average, the new species is larger and the colouration of the upper surface darker than in most other species of the genus. Seemingly the species has been confounded with others in the past, particularly S. optatus (Seidlitz, 1887). Males can be separated from externally similar species by studying the shape of the parameres. Additionally, the anterior margin of the clypeus is provided with a distinct rim in both sexes, which is absent or only weakly present in other species. The habitus and the male genitalia of the new species are illustrated, and compared with those of S. optatus. External morphological differences from other members of the genus are discussed. According to studies of the molecular phylogeny, based on fragments of four mitochondrial genes, S. abellani sp. n. is clearly separated from previously described species of Stictonectes Brinck, 1943, apparently being relatively basal within the genus. The new species is rather widely distributed in the south-western part of the Iberian Peninsula, inhabiting pools in small temporary siliceous streams. We provide distributional maps for all eight Iberian Stictonectes and estimate the potential distributional areas of the new species and the other two endemic Iberian species S. occidentalis Fresneda & Fery, 1990 and S. rebeccae Bilton, 2011, based on environmental niche modelling. 

HIGH PERFORMANCE SIDE-STREAM NITRIFICATION OF MUNICIPAL BIOSOLIDS TREATMENT DECANTS

EPA Science Inventory

Nutrient (i.e. nitrogen) contamination of surface waters constitutes one of the most pervasive problems facing wastewater treatment works across the country. Nitrogen discharge to surface water occurs mostly in the form of ammonia which is identified as the most toxic nitrogen sp...

Phytophthora stricta isolated from Rhododendron maximum in Pennsylvania

USDA-ARS?s Scientific Manuscript database

During a survey in October 2013, in the Michaux State Forest in Pennsylvania , necrotic Rhododendron maximum leaves were noticed on mature plants alongside a stream. Symptoms were nondescript necrotic lesions at the tips of mature leaves. Colonies resembling a Phytophthora sp. were observed from c...

The HTM Spatial Pooler-A Neocortical Algorithm for Online Sparse Distributed Coding.

PubMed

Cui, Yuwei; Ahmad, Subutai; Hawkins, Jeff

2017-01-01

Hierarchical temporal memory (HTM) provides a theoretical framework that models several key computational principles of the neocortex. In this paper, we analyze an important component of HTM, the HTM spatial pooler (SP). The SP models how neurons learn feedforward connections and form efficient representations of the input. It converts arbitrary binary input patterns into sparse distributed representations (SDRs) using a combination of competitive Hebbian learning rules and homeostatic excitability control. We describe a number of key properties of the SP, including fast adaptation to changing input statistics, improved noise robustness through learning, efficient use of cells, and robustness to cell death. In order to quantify these properties we develop a set of metrics that can be directly computed from the SP outputs. We show how the properties are met using these metrics and targeted artificial simulations. We then demonstrate the value of the SP in a complete end-to-end real-world HTM system. We discuss the relationship with neuroscience and previous studies of sparse coding. The HTM spatial pooler represents a neurally inspired algorithm for learning sparse representations from noisy data streams in an online fashion.

Complete genome sequence of Thioalkalivibrio sp. K90mix

PubMed Central

Muyzer, Gerard; Sorokin, Dimitry Y.; Mavromatis, Konstantinos; Lapidus, Alla; Foster, Brian; Sun, Hui; Ivanova, Natalia; Pati, Amrita; D'haeseleer, Patrik; Woyke, Tanja; Kyrpides, Nikos C.

2011-01-01

Thioalkalivibrio sp. K90mix is an obligately chemolithoautotrophic, natronophilic sulfur-oxidizing bacterium (SOxB) belonging to the family Ectothiorhodospiraceae within the Gammaproteobacteria. The strain was isolated from a mixture of sediment samples obtained from different soda lakes located in the Kulunda Steppe (Altai, Russia) based on its extreme potassium carbonate tolerance as an enrichment method. Here we report the complete genome sequence of strain K90mix and its annotation. The genome was sequenced within the Joint Genome Institute Community Sequencing Program, because of its relevance to the sustainable removal of sulfide from wastewater and gas streams. PMID:22675584

Relative abundance and distribution of fishes within an established Area of Critical Environmental Concern, of the Amargosa River Canyon and Willow Creek, Inyo and San Bernardino Counties, California

USGS Publications Warehouse

Scoppettone, G. Gary; Hereford, Mark E.; Rissler, Peter H.; Johnson, Danielle M.; Salgado, Antonio

2011-01-01

The Amargosa River Canyon of San Bernardino and Inyo County, California, has been designated by the Bureau of Land Management as an Area of Critical Environmental Concern, due in part to its unique flora and fauna. As a task of the Area of Critical Environmental Concern implementation plan, a survey of native fishes was conducted from June 21 to August 12, 2010. Geographic Information System tools were used to map sampling locations, which were spaced at 50-meter intervals. Global Positioning Systems were used to locate sampling stations, and stations with adequate water for successful trapping were sampled with baited minnow traps. Amargosa River pupfish (Cyprinodon nevadensis amargosae) and speckled dace (Rhinichthys osculus spp.) were widespread throughout Armargosa River Canyon. Throughout the study area 8,558 pupfish were captured at 194 stations; 3,472 speckled dace were captured at 210 stations; 238 red-swamp crayfish (Procambarus clarkia) were captured at 83 stations; and 1,095 western mosquitofish (Gambusia affinus) were captured at 110 stations. Pupfish were most abundant in open water habitat with native riparian vegetation, and they were significantly less abundant where the stream was completely covered by cattails or where saltcedar (Tamarix sp.) dominated the riparian corridor. There was no relationship between stream cover and speckled dace distribution. Non-native western mosquitofish and red-swamp crayfish densities were significantly higher in stream reaches dominated by saltcedar. The continued spread of saltcedar threatens to negatively affect pupfish and potentially reduce speckled dace abundance throughout the Amargosa River Canyon. This study can serve as baseline information for observing native fish populations in the future, as related to potential changes to the Amargosa River Canyon ecosystem.

Treatment of cosmetic effluent in different configurations of ceramic UF membrane based bioreactor: Toxicity evaluation of the untreated and treated wastewater using catfish (Heteropneustes fossilis).

PubMed

Banerjee, Priya; Dey, Tanmoy Kumar; Sarkar, Sandeep; Swarnakar, Snehasikta; Mukhopadhyay, Aniruddha; Ghosh, Sourja

2016-03-01

Extensive usage of pharmaceutical and personal care products (PPCPs) and their discharge through domestic sewage have been recently recognized as a new generation environmental concern which deserves more scientific attention over the classical environmental pollutants. The major issues of this type of effluent addressed in this study were its colour, triclosan and anionic surfactant (SDS) content. Samples of cosmetic effluent were collected from different beauty treatment salons and spas in and around Kolkata, India and treated in bioreactors containing a bacterial consortium isolated from activated sludge samples collected from a common effluent treatment plant. Members of the consortium were isolated and identified as Klebsiella sp., Pseudomonas sp., Salmonella sp. and Comamonas sp. The biotreated effluent was subjected to ultrafiltration (UF) involving indigenously prepared ceramic membranes in both side-stream and submerged mode. Analysis of the MBR treated effluent revealed 99.22%, 98.56% and 99.74% removal of colour, triclosan and surfactant respectively. Investigation of probable acute and chronic cyto-genotoxic potential of the untreated and treated effluents along with their possible participation in triggering oxidative stress was carried out with Heteropneustes fossilis (Bloch). Comet formation recorded in both liver and gill cells and micronucleus count in peripheral erythrocytes of individuals exposed to untreated effluent increased with duration of exposure and was significantly higher than those treated with UF permeates which in turn neared control levels. Results of this study revealed successful application of the isolated bacterial consortium in MBR process for efficient detoxification of cosmetic effluent thereby conferring the same suitable for discharge and/or reuse. Copyright © 2015 Elsevier Ltd. All rights reserved.

A new treefrog (Hylidae: Litoria) from Kroombit Tops, east Australia, and an assessment of conservation status.

PubMed

Hoskin, Conrad J; Hines, Harry B; Meyer, Ed; Clarke, John; Cunningham, Michael

2013-01-01

The Litoria phyllochroa species-group are small hylid frogs that occur in wet forests of south-east Australia. This group has had a long history of taxonomic confusion and has received little attention in the last decade. A population of this species-group at Kroombit Tops, several hundred kilometers north of all other populations, has been recognised for some time as being genetically highly distinct. Here we describe this population as a new species, L. kroombitensis sp. nov. This species is most similar to L. barringtonensis and L. pearsoniana but is readily distinguished based on differences in morphology, colour pattern, mating call and genetics. Litoria kroombitensis sp. nov. is restricted to Kroombit Tops, an isolated area of wet forest in south-east Queensland. The species inhabits slow and intermittently flowing streams in rainforest and adjoining wet sclerophyll forest. The tadpole of L. kroombitensis sp. nov., described herein, is similar in morphology and behaviour to the tadpoles of other species within the Litoria phyllochroa species-group, in particular L. pearsoniana. Li toria kroombitensis sp. nov. has a very small distribution, with all records coming from the headwaters of five streams, Extensive surveys since the mid-1990s have revealed population declines, attributable to amphibian chytrid fungus (Batrachochytrium dendrobatidis). Other threats include degradation of riparian habitat due to invasive weeds, feral pigs and livestock, and fire. Further, the extent of wet forest habitats at Kroombit Tops is likely to be reduced by climate change impacts. Litoria kroombitensis sp. nov. meets IUCN Red List criteria for critically endangered CR B lab (i-v) due to its small geographic range, naturally fragmented distribution, and observed and projected decline in populations. In this paper we also assess the validity of the names L. barringtonensis, L. pearsoniana and L. piperata. We conclude that the names L. barringtonensis and L. pearsoniana are valid but the validity of L. piperata requires further investigation.

Descriptions of four kleptoparasitic spiders of the genus Mysmenopsis (Araneae, Mysmenidae) and their potential host spider species in the genus Linothele (Araneae, Dipluridae) from Ecuador.

PubMed

Dupérré, Nadine; Tapia, Elicio

2015-06-12

Four new species of the genus Mysmenopsis are described: M. onorei n. sp., M. otonga n. sp., M. fernandoi n. sp. and M. chiquita n. sp. All species were collected in diplurid webs and are therefore assumed to be kleptoparasitic. Five potential host species of the genus Linothele (Dipluridae) that were collected with the symbionts are also described: Linothele yanachanka n. sp., L. pukachumpi n. sp., L. zaia n. sp., L. tsachilas n. sp. and L. quori n. sp.

Real alerts and artifact classification in archived multi-signal vital sign monitoring data: implications for mining big data.

PubMed

Hravnak, Marilyn; Chen, Lujie; Dubrawski, Artur; Bose, Eliezer; Clermont, Gilles; Pinsky, Michael R

2016-12-01

Huge hospital information system databases can be mined for knowledge discovery and decision support, but artifact in stored non-invasive vital sign (VS) high-frequency data streams limits its use. We used machine-learning (ML) algorithms trained on expert-labeled VS data streams to automatically classify VS alerts as real or artifact, thereby "cleaning" such data for future modeling. 634 admissions to a step-down unit had recorded continuous noninvasive VS monitoring data [heart rate (HR), respiratory rate (RR), peripheral arterial oxygen saturation (SpO 2 ) at 1/20 Hz, and noninvasive oscillometric blood pressure (BP)]. Time data were across stability thresholds defined VS event epochs. Data were divided Block 1 as the ML training/cross-validation set and Block 2 the test set. Expert clinicians annotated Block 1 events as perceived real or artifact. After feature extraction, ML algorithms were trained to create and validate models automatically classifying events as real or artifact. The models were then tested on Block 2. Block 1 yielded 812 VS events, with 214 (26 %) judged by experts as artifact (RR 43 %, SpO 2 40 %, BP 15 %, HR 2 %). ML algorithms applied to the Block 1 training/cross-validation set (tenfold cross-validation) gave area under the curve (AUC) scores of 0.97 RR, 0.91 BP and 0.76 SpO 2 . Performance when applied to Block 2 test data was AUC 0.94 RR, 0.84 BP and 0.72 SpO 2 . ML-defined algorithms applied to archived multi-signal continuous VS monitoring data allowed accurate automated classification of VS alerts as real or artifact, and could support data mining for future model building.

Real Alerts and Artifact Classification in Archived Multi-signal Vital Sign Monitoring Data—Implications for Mining Big Data — Implications for Mining Big Data

PubMed Central

Hravnak, Marilyn; Chen, Lujie; Dubrawski, Artur; Bose, Eliezer; Clermont, Gilles; Pinsky, Michael R.

2015-01-01

PURPOSE Huge hospital information system databases can be mined for knowledge discovery and decision support, but artifact in stored non-invasive vital sign (VS) high-frequency data streams limits its use. We used machine-learning (ML) algorithms trained on expert-labeled VS data streams to automatically classify VS alerts as real or artifact, thereby “cleaning” such data for future modeling. METHODS 634 admissions to a step-down unit had recorded continuous noninvasive VS monitoring data (heart rate [HR], respiratory rate [RR], peripheral arterial oxygen saturation [SpO2] at 1/20Hz., and noninvasive oscillometric blood pressure [BP]) Time data were across stability thresholds defined VS event epochs. Data were divided Block 1 as the ML training/cross-validation set and Block 2 the test set. Expert clinicians annotated Block 1 events as perceived real or artifact. After feature extraction, ML algorithms were trained to create and validate models automatically classifying events as real or artifact. The models were then tested on Block 2. RESULTS Block 1 yielded 812 VS events, with 214 (26%) judged by experts as artifact (RR 43%, SpO2 40%, BP 15%, HR 2%). ML algorithms applied to the Block 1 training/cross-validation set (10-fold cross-validation) gave area under the curve (AUC) scores of 0.97 RR, 0.91 BP and 0.76 SpO2. Performance when applied to Block 2 test data was AUC 0.94 RR, 0.84 BP and 0.72 SpO2). CONCLUSIONS ML-defined algorithms applied to archived multi-signal continuous VS monitoring data allowed accurate automated classification of VS alerts as real or artifact, and could support data mining for future model building. PMID:26438655

A revision of the South African riffle beetle genus Leielmis Delève, 1964 (Coleoptera: Elmidae).

PubMed

Bilton, David T

2017-04-12

The riffle beetle genus Leielmis Delève, 1964 is redescribed and shown to contain three species, all of which are apparently endemic to the South African Cape, where they live in permanent mountain streams with cold running water. A lectotype is designated for Helmis georyssoides Grouvelle, 1890, and two additional species (L. gibbosus sp. nov. and L. hirsutus sp. nov.) are described for the first time. Following study of the type series, L. georyssoides is shown to be endemic to Table Mountain; most specimens previously assigned to this taxon representing an additional species (L. gibbosus sp. nov.), widespread in the interior Cape Fold Mountains. The record of Leielmis from Angola is considered highly doubtful. Comparative notes and a key are provided to allow the identification of known species of the genus.

Three new species of Grouvellinus Champion, 1923 from Maliau Basin, Sabah, Borneo, discovered by citizen scientists during the first Taxon Expedition (Insecta, Coleoptera, Elmidae)

PubMed Central

Freitag, Hendrik; Pangantihon, Clister V.; Njunjić, Iva

2018-01-01

Abstract Further results are presented of the first field course at Maliau Basin, Malaysian Borneo organized by Taxon Expeditions, an organization which enables citizen scientists to be directly involved in taxonomic discoveries. Three new species of the aquatic beetle genus Grouvellinus Champion, 1923, namely G. leonardodicaprioi sp. n., G. andrekuipersi sp. n., and G. quest sp. n. were collected jointly by the citizen scientists and taxonomists during the fieldwork in Maliau Basin. Material was mainly sampled from sandstone bottom rocks of blackwater streams at altitudes between 900 m and 1,000 m using fine-meshed hand-nets. The genus is widely distributed in the Oriental and Palearctic regions, but these are the first records from the island of Borneo. PMID:29740222

Chlorobium limicola forma thiosulfatophilum: Biocatalyst in the Production of Sulfur and Organic Carbon from a Gas Stream Containing H2S and CO2

PubMed Central

Cork, Douglas J.; Garunas, Ruta; Sajjad, Ashfaq

1983-01-01

Chlorobium limicola forma thiosulfatophilum (ATCC 17092) was grown in a 1-liter continuously stirred tank reactor (800-ml liquid volume) at pH 6.8, 30°C, saturated light intensity, and a gas flow rate of 23.6 ml/min from a gas cylinder blend consisting of 3.9 mol% H2S, 9.2 mol% CO2, 86.4 mol% N2, and 0.5 mol% H2. This is the first demonstration of photoautotrophic growth of a Chlorobium sp. on a continuous inorganic gas feed. A significant potential exists for applying this photoautotrophic process to desulfurization and CO2 fixation of gases containing acidic components (H2S and CO2). PMID:16346255

Differences in ecological structure, function, and native species abundance between native and invaded Hawaiian streams.

PubMed

Holitzki, Tara M; MacKenzie, Richard A; Wiegner, Tracy N; McDermid, Karla J

2013-09-01

Poeciliids, one of the most invasive species worldwide, are found on almost every continent and have been identified as an "invasive species of concern" in the United States, New Zealand, and Australia. Despite their global prevalence, few studies have quantified their impacts on tropical stream ecosystem structure, function, and biodiversity. Utilizing Hawaiian streams as model ecosystems, we documented how ecological structure, function, and native species abundance differed between poeciliid-free and poeciliid-invaded tropical streams. Stream nutrient yields, benthic biofilm biomass, densities of macroinvertebrates and fish, and community structures of benthic algae, macroinvertebrates, and fish were compared between streams with and without established poeciliid populations on the island of Hawai'i, Hawaii, USA. Sum nitrate (sigmaNO3(-) = NO3(-) + NO2(-)), total nitrogen, and total organic carbon yields were eight times, six times, and five times higher, respectively, in poeciliid streams than in poeciliid-free streams. Benthic biofilm ash-free dry mass was 1.5x higher in poeciliid streams than in poeciliid-free streams. Percentage contributions of chironomids and hydroptilid caddisflies to macroinvertebrate densities were lower in poeciliid streams compared to poeciliid-free streams, while percentage contributions of Cheumatopsyche analis caddisflies, Dugesia sp. flatworms, and oligochaetes were higher. Additionally, mean densities of native gobies were two times lower in poeciliid streams than in poeciliid-free ones, with poeciliid densities being approximately eight times higher than native fish densities. Our results, coupled with the wide distribution of invasive poeciliids across Hawaii and elsewhere in the tropics, suggest that poeciliids may negatively impact the ecosystem structure, function, and native species abundance of tropical streams they invade. This underscores the need for increased public awareness to prevent future introductions and for developing and implementing effective eradication and restoration strategies.

Zinc isotope and transition-element dynamics accompanying hydrozincite biomineralization in the Rio Naracauli, Sardinia, Italy

USGS Publications Warehouse

Wanty, Richard B.; Podda, F.; De Giudici, Giovanni; Cidu, R.; Lattanzi, Pierfranco

2013-01-01

The Rio Naracauli in SW Sardinia drains part of the Ingurtosu Zn–Pb mining district, and contains extreme concentrations of dissolved Zn at near-neutral pH. In the upper reaches of the stream, pH, alkalinity and Zn concentrations are such that hydrozincite [Zn5(CO3)2(OH)6] precipitates in a biologically mediated process facilitated by a microalga (Chlorella sp.) and a cyanobacterium (Scytonema sp.). Values of δ66Zn in water and solid samples ranged from − 0.35‰ to + 0.5‰ relative to the JMC 3-0749-Lyon standard, and closely follow a mass-dependent fractionation line. Two composite samples of sphalerite, the primary ore mineral in the Ingurtosu deposits, had an average δ66Zn of + 0.15‰, similar to sphalerite measured elsewhere in hydrothermal mineral deposits. Zinc isotope measurements of the stream water and the hydrozincite forming in the stream show a consistent preference for the heavy isotope, 66Zn, in the hydrozincite relative to 64Zn. Synthetic hydrozincites produced without added bacteria have δ66Zn identical to the dissolved Zn, thus suggesting a biologically mediated mineralization process in Rio Naracauli. The average fractionation, Δhdz-water, is 0.35‰, the magnitude of which is consistent with other studies, and suggests an extracellular mechanism of the biomineralization process. Zinc concentration and dissolved δ66Zn steadily decrease in the reach of the stream where the biomineralization occurs. The biomineralization process also leads to the sequestration of Pb, Cu and Ni in the hydrozincite lattice, and the coeval precipitation of an amorphous CdCO3 solid, prompting the suggestion that if optimized, the biomineralization process might represent a feasible passive remediation strategy for streams with high Zn and other metals, and with near-neutral pH.

PERSISTENCE OF A SURROGATE FOR A GENETICALLY ENGINEERED CELLULOLYTIC MICROORGANISM AND EFFECTS ON AQUATIC COMMUNITY AND ECOSYSTEM PROPERTIES: MICROCOSM AND STREAM COMPARISONS

EPA Science Inventory

Our research objectives were to: (1) determine the persistence of an introduced surrogate (Cellulomonas sp NRC 2406) for a genetically engineered microorganism (GEM) in three streamlined habitats; sediments, growths of Cladophora (Chlorophyta), and leaf packs, (2) test ommunity a...

The association of feeding behaviour with the resistance and tolerance to parasites in recently diverged sticklebacks.

PubMed

Anaya-Rojas, Jaime M; Brunner, Franziska S; Sommer, Nina; Seehausen, Ole; Eizaguirre, Christophe; Matthews, Blake

2016-11-01

Divergent natural selection regimes can contribute to adaptive population divergence, but can be sensitive to human-mediated environmental change. Nutrient loading of aquatic ecosystems, for example, might modify selection pressures by altering the abundance and distribution of resources and the prevalence and infectivity of parasites. Here, we used a mesocosm experiment to test for interactive effects of nutrient loading and parasitism on host condition and feeding ecology. Specifically, we investigated whether the common fish parasite Gyrodactylus sp. differentially affected recently diverged lake and stream ecotypes of three-spined stickleback (Gasterosteus aculeatus). We found that the stream ecotype had a higher resistance to Gyrodactylus sp. infections than the lake ecotype, and that both ecotypes experienced a cost of parasitism, indicated by negative relationships between parasite load and both stomach fullness and body condition. Overall, our results suggest that in the early stages of adaptive population divergence of hosts, parasites can affect host resistance, body condition and diet. © 2016 European Society For Evolutionary Biology. Journal of Evolutionary Biology © 2016 European Society For Evolutionary Biology.

Simultaneous spawning by female stream goby Rhinogobius sp. and the association with brood cannibalism by nesting males.

PubMed

Ito, S; Iwao, H; Sakata, J; Inoue, M; Omori, K; Yanagisawa, Y

2016-09-01

A laboratory experiment was conducted by varying the undersurface area of nesting substratum and the number of females in an experimental tank to elucidate the determinants of the mating pattern in the stream goby, Rhinogobius sp. cross-band type. Males with larger nests tended to attract two or more females to their nest in a tank. Moreover, males spawned simultaneously with multiple females and entire brood cannibalism by males was rarely observed under a female-biased sex ratio. When males spawned with a single female with low fecundity, however, entire brood cannibalism occurred at a high frequency, suggesting that a male guarding a nest with fewer eggs consumes the brood. Therefore, spawning behaviour of females that leads to a large egg mass would decrease the risk of entire brood cannibalism. In this species, simultaneous spawning by multiple females in a nest serves as a female counter-measure against entire brood cannibalism. These results suggest that a conflict of interest between the sexes through brood cannibalism is a major determinant of simultaneous spawning. © 2016 The Fisheries Society of the British Isles.

Streaming potential in nature

NASA Astrophysics Data System (ADS)

Schuch, M.

For the first time, QUINCKE found in 1859 the phenomenon of electric streaming potential. Twenty years later HELMHOLTZ published a mathematical expression for the streaming potential. In the following years a number of scientists studied the phenomenon. BIKERMAN (1932) showed that each electric streaming potential causes an electric current in the contrary direction. SWARTZENDRUBER postulated in 1967 that this electric field tries to stop the streaming potential as a result of the energy balance.

Phosphate dynamics in an acidic mountain stream: Interactions involving algal uptake, sorption by iron oxide, and photoreduction

USGS Publications Warehouse

Tate, Cathy M.; Broshears, Robert E.; McKnight, Diane M.

1995-01-01

Acid mine drainage streams in the Rocky Mountains typically have few algal species and abundant iron oxide deposits which can sorb phosphate. An instream injection of radiolabeled phosphate (32P0,) into St. Kevin Gulch, an acid mine drainage stream, was used to test the ability of a dominant algal species, Ulothrix sp., to rapidly assimilate phosphate. Approximately 90% of the injected phosphate was removed from the water column in the 175-m stream reach. When shaded stream reaches were exposed to full sunlight after the injection ended, photoreductive dissolution of iron oxide released sorbed 32P, which was then also removed downstream. The removal from the stream was modeled as a first-order process by using a reactive solute transport transient storage model. Concentrations of 32P mass-’ of algae were typically lo-fold greater than concentrations in hydrous iron oxides. During the injection, concentrations of 32P increased in the cellular P pool containing soluble, low-molecular-weight compounds and confirmed direct algal uptake of 32P0, from water. Mass balance calculations indicated that algal uptake and sorption on iron oxides were significant in removing phosphate. We conclude that in stream ecosystems, PO, sorbed by iron oxides can act as a dynamic nutrient reservoir regulated by photoreduction.

Storm water runoff-a source of emerging contaminants in urban streams

NASA Astrophysics Data System (ADS)

Xia, K.; Chen, C.; FitzGerald, K.; Badgley, B.

2016-12-01

Emerging contaminants (ECs) that refers to prescription, over-the-counter, veterinary, and illicit drugs in addition to products intended to have primary effects on the human body, such as sunscreens and insect repellants. Historically municipal wastewater treatment effluent has been considered to be the main source of ECs in aquatic environment. However, recent investigations have suggested urban storm water runoff as an important source of ECs in the environment. The objective of this multi-year study was to investigate the occurrence of a wide range of ECs and the special and temporal change of 4-Nonlyphenol (4-NP), an endocrine disruptor, in a stream solely impacted by the storm water runoff from Blacksburg, VA. Urban land cover has doubled during the past 15 years surrounding this. Water and sediment samples were collected periodically along the stream during a 3-year period and analyzed for 4-NP using a gas chromatography/tandem mass spectrometry and for EC screening using an ultra- performance liquid chromatography/tandem mass spectrometry. In addition, human-associated Bacteroides sp. (HF183) was analyzed to explore possible cross contamination between the sewer system and storm water collection system of the city. Fifteen ECs were detected in water samples from various locations along the stream at estimated levels ranging from low ppt to low ppb. The levels of 4-NP in the storm water sediment samples, ranging from 30-1500 µg/kg (d.w.), positively correlated with the levels of Human-associated Bacteroides sp. (HF183) in the storm water. Our study suggested: 1) collective urban activity and leaky urban sewer systems are significant sources of ECs in storm water runoff that are often untreated or with minimum treatment before flowing into urban streams; and 2) sediment transport and re-suspension can further releases accumulated ECs back into stream water during rain events, resulting in occurrence of ECs downstream and possibly in the receiving river. This study demonstrated that urband storm water runoff could be a significant source, in addition to WWTP effluent, contributing to the widespread occurrence of ECs in aquatic environment.

Effects of Caribbean oceanic plateau shallow subduction on topographic uplift and exhumation of the northwestern Maracaibo block, Colombia

NASA Astrophysics Data System (ADS)

Sanchez, J.; Mann, P.

2013-12-01

The Maracaibo block in the northwestern South America is a triangular lithotectonic terrane bounded on its western edge by the Santa Marta-Bucaramanga left-lateral strike-slip fault and the Oca-Ancon right-lateral strike-slip fault on its northern edge. These faults bound two isolated Andean ranges within the Maracaibo block: the Sierra de Santa Marta massif (SSM) in the east whose highest point is 5700 m ASL, and the Serrania del Perija (SP) to the west, whose highest point is 3600 m ASL. The two ranges are separated by an elongate, NNE-trending sedimentary basin, the Cesar-Rancheria basin (CRB). Previous thermochronological studies in the region have shown three discrete exhumation pulses from Paleocene to Miocene that are attributed to various collisional and strike events along the Caribbean margin. However the tectonic origin of the late Neogene deformation that produced the isolated, high topography of the SSM and SP has remained unclear. To establish patterns of recent uplift and associate them with a specific tectonic mechanism affecting the area, we integrated the following results: 1) analysis of stream profiles using channel normalized steepness indices and identification of slope-break knickpoints as indicators of rock uplift; 2) integration of observations from geological maps; 3) interpretation of 2D onland seismic profiles; 4) analysis of published thermochronological data; and 5) analysis of 1D/2D basin model based on well subsidence analysis from the CRB. Our results from the extraction of 550 long stream profiles from different watersheds for the SSM and SP reveal: 1) undisturbed profiles at western flank of the northern SP characterized by a few vertical-step knickpoints associated with lithology changes; in contrast the eastern flank of the northern SP shows slope-break knickpoints and changes in steepness indices increasing by a factor of ~2, all indicative of active fault control affecting this area; 2) disturbed profiles in the elevated central SP show several slope-break knickpoints and changes in steepness indices by factor of ~1.9, all indicative of fault control in this area; 3) perturbations in stream profiles with change in steepness indices by a factor of ~1.6 occur in the southern SP are interpreted as the expression of the active Santa-Marta Bucaramanga fault system, 4) although most of the knickpoints in SSM profiles seem to be associated with changes in bedrock lithology, the alignments, slope-breaking character, and change in steepness indices by factor of ~1.8-2.2 indicate active ENE-WSW fault control along the south-southeastern edge of the SSM, 5) generally undisturbed profiles at northern SSM suggest current quiescence in rock uplift in this area; and 6) basin modeling of the CRB constrain the most recent uplift event as Mio-Pliocene at rates of 0.15-0.18 mm/yr. We propose that the most likely tectonic mechanism to explain widespread active fault activity and uplift within the SSM and SP is oblique, low-angle (20 degrees), southeastward subduction of the Caribbean plate beneath the area. The present rate of subduction and length of slab would have initiated uplift and fault activity at Early Miocene.

Producing methane, methanol and electricity from organic waste of fermentation reaction using novel microbes.

PubMed

Dhiman, Saurabh Sudha; Shrestha, Namita; David, Aditi; Basotra, Neha; Johnson, Glenn R; Chadha, Bhupinder S; Gadhamshetty, Venkataramana; Sani, Rajesh K

2018-06-01

Residual solid and liquid streams from the one-pot CRUDE (Conversion of Raw and Untreated Disposal into Ethanol) process were treated with two separate biochemical routes for renewable energy transformation. The solid residual stream was subjected to thermophilic anaerobic digestion (TAD), which produced 95 ± 7 L methane kg -1 volatile solid with an overall energy efficiency of 12.9 ± 1.7%. A methanotroph, Methyloferula sp., was deployed for oxidation of mixed TAD biogas into methanol. The residual liquid stream from CRUDE process was used in a Microbial Fuel Cell (MFC) to produce electricity. Material balance calculations confirmed the integration of biochemical routes (i.e. CRUDE, TAD, and MFC) for developing a sustainable approach of energy regeneration. The current work demonstrates the utilization of different residual streams originated after food waste processing to release minimal organic load to the environment. Copyright © 2018 Elsevier Ltd. All rights reserved.

Effect of Culverts on Predator-Prey Interactions in a Tropical Stream.

NASA Astrophysics Data System (ADS)

Hein, C. L.; Kikkert, D. A.; Crowl, T. A.

2005-05-01

As part of a biocomplexity project in Puerto Rico, we use river and road networks as a platform to understand the interactions between stream biota, the physical environment, and human activity. Specifically, we ask if humans affect aquatic organisms through road building and recreational activities. Culverts have been documented to impede or slow migration of aquatic biota. This is especially important in these streams because all of the freshwater, stream species have diadramous life cycles. If culverts do act as bottlenecks to shrimp migrations, we expect altered predator-prey interactions downstream through density-dependent predation dynamics. In order to determine how roads may affect predation rates on upstream migrating shrimp, we parameterized functional response curves for mountain mullet (Agonostomus monticola) consuming shrimp (Xiphocaris sp.) using artificial mesocosm experiments. We then used data obtained from underwater videography to determine how culverts decrease the rate and number of shrimp moving upstream. These data were combined in a predator-prey model to quantify the effects of culverts on localized shrimp densities and fish predation.

Real-time analysis for intensive care: development and deployment of the artemis analytic system.

PubMed

Blount, Marion; Ebling, Maria R; Eklund, J Mikael; James, Andrew G; McGregor, Carolyn; Percival, Nathan; Smith, Kathleen P; Sow, Daby

2010-01-01

The lives of many thousands of children born premature or ill at term around the world have been saved by those who work within neonatal intensive care units (NICUs). Modern-day neonatologists, together with nursing staff and other specialists within this domain, enjoy modern technologies for activities such as financial transactions, online purchasing, music, and video on demand. Yet, when they move into their workspace, in many cases, they are supported by nearly the same technology they used 20 years ago. Medical devices provide visual displays of vital signs through physiological streams such as electrocardiogram (ECG), heart rate, blood oxygen saturation (SpO(2)), and respiratory rate. Electronic health record initiatives around the world provide an environment for the electronic management of medical records, but they fail to support the high-frequency interpretation of streaming physiological data. We have taken a collaborative research approach to address this need to provide a flexible platform for the real-time online analysis of patients' data streams to detect medically significant conditions that precede the onset of medical complications. The platform supports automated or clinician-driven knowledge discovery to discover new relationships between physiological data stream events and latent medical conditions as well as to refine existing analytics. Patients benefit from the system because earlier detection of signs of the medical conditions may lead to earlier intervention that may potentially lead to improved patient outcomes and reduced length of stays. The clinician benefits from a decision support tool that provides insight into multiple streams of data that are too voluminous to assess with traditional methods. The remainder of this article summarizes the strengths of our research collaboration and the resulting environment known as Artemis, which is currently being piloted within the NICU of The Hospital for Sick Children (SickKids) in Toronto, Ontario, Canada. Although the discussion in this article focuses on a NICU, the technologies can be applied to any intensive care environment.

Continuous multi-component geophysical experiment on LUSI mud edifice: What can we learn from it?

NASA Astrophysics Data System (ADS)

Mauri, Guillaume; Husein, Alwi; Karyono, Karyono; Hadi, Soffian; Mazzini, Adriano; Collignon, Marine; Faubert, Maïté; Miller, Stephen A.; Lupi, Matteo

2016-04-01

The Lusi eruption is located in East Java, Indonesia, and is ongoing since May 29th, 2006. In the framework of joined international projects, several joint geophysical studies focussing on seismic monitoring, spatial investigation over the mud edifice and its surroundings are being conducted. Here we present freshly acquired data from a test site to investigate: (1) potential change in the natural electrical self-potential generation over time (2) potential change in gravity field associated to change in mass or volume, (3) if the geysering activity generates disruption on either the electrical or gravity field. We selected a location ˜200m to the NE of the active Lusi crater. The experiment site covers an area of 60m x 80m, crossing the boundaries between the soft and the solid walkable mud. The western edge of the study area was less than 100m away from the rim of the crater site. A self-potential array made of 6 Pb-PbCl2 electrodes was deployed over the site. The electrodes were positioned inside active seeps, on dry unaltered zones and close to the mud stream that flushes the water erupted from the crater site. All the electrodes were connected to a single Pb-PbCl2 electrode reference. A second array of 7 thermometers was installed positioning 5 of them next to SP electrodes, one to measure atmospheric temperature and another P/T probe to monitor the stream water. In addition a seismometer coupled with a HD video camera, a thermal camera and a gravimeter recorded on site for several days monitoring visual and seismic activity of the crater. The collected data allows us to 1) monitor and define the different geysering activities ongoing at the crater, 2) define the delay existing between the recorded seismicity and the visual observations, 3) verify if the crater activity triggers perturbations that are transmitted to e.g. the thousands of satellite seeps distributed in the 7 square kilometers zone inside the embankment; 4) how significant is the delay between the crater activity and the water streamed out.

A unique approach to determine the ice nucleating potential of soot-containing aerosol from biomass combustion

NASA Astrophysics Data System (ADS)

Levin, E. J.; McMeeking, G. R.; McCluskey, C.; DeMott, P. J.; Kreidenweis, S. M.

2013-12-01

Ice nucleating particles (INP) play a crucial role in cloud and precipitation development in mixed phase clouds by catalyzing ice formation at temperatures warmer than -36 C. Despite their importance, however, there is still considerable uncertainty as to the sources and chemical nature of INP. Water insoluble particles such as mineral dust and certain biological aerosols have been shown to be efficient ice nuclei, and soot particles have also been suggested as potential INP. Biomass burning, such as wildfires and prescribed burning, is a large contributor to atmospheric soot concentrations, and could therefore be a potentially important source of INP. Both laboratory and field studies have detected enhanced INP concentrations in smoke plumes; however, the chemical composition of these INP is still uncertain as fires emit and loft a complex mixture of aerosol particles. In this work we employ a novel approach to selectively remove soot aerosol from the sample stream to determine the specific contribution of soot to INP concentrations. A number of commonly consumed biomass fuels were burned in the U.S. Forest Service combustion laboratory during the FLAME-4 (Fire Laboratory At Missoula Experiment - 4) study. Number concentrations of INP acting in the condensation and immersion freezing modes and total aerosol greater than 500 nm in diameter (N500) were measured using the Colorado State University Continuous Flow Diffusion Chamber (CFDC). To determine the contribution of soot to INP concentrations, the sample stream was passed through a Single Particle Soot Photometer (SP2; Droplet Measurement Technologies) which employs laser induced incandescence (LII) to detect soot containing particles and total soot mass. During LII, soot containing particles are vaporized and removed from the sample while non-soot containing particles pass through the instrument unaffected. By sampling the exhaust of the SP2 with the CFDC and alternately cycling laser power on and off we were able to estimate the contribution of soot to total INP. Reductions in both N500 and INP were observed when the laser power was on, indicating both the presence of soot in the total aerosol and the INP fraction of these particles. However, considerable variability was observed in the fraction of INP composed of soot-containing particles with a range from ~0 - 70% for the biomass types and combustion conditions examined.

The effects of substance P on smooth muscle cells and on neuro-effector transmission in the guinea-pig ileum

PubMed Central

Fujisawa, Kazuaki; Ito, Yushi

1982-01-01

1 The effects of substance P (SP) on the membrane and contractile properties of the smooth muscle cell, or on neuro-effector transmission in the guinea-pig ileum were observed by means of microelectrodes, double sucrose gap and tension recording. 2 SP (10-13-10-10M) induced a phasic contraction of longitudinal muscle strips, but did not change the muscle tone of circular muscle strips, in concentrations up to 10-8M. 3 SP (10-10-10-8M) evoked three different membrane responses in longitudinal muscle cells: (i) bursts of spike discharges with no significant change in the membrane potential and input membrane resistance; (ii) bursts of spike discharges with a small but clear depolarization of the membrane and increase in the input membrane resistance; (iii) slow waves with no change in the membrane potential. 4 In the circular muscle cells, low concentrations of SP (<10-8M) did not affect the membrane potential or the spikes, but SP (10-7M) increased the spike discharges with no significant change in the membrane potential. 5 SP (10-10M) reduced the threshold depolarization required for the generation of action potentials with no change in membrane potential of the longitudinal muscle cells. 6 Pretreatment with atropine (5 × 10-6M), tetrodotoxin (TTX 10-6M) or baclofen (4.7 × 10-6M) had no effect on the excitatory actions of SP on the smooth muscle cells of longitudinal and circular muscle strips. 7 Excitatory actions of SP on the membrane potential or spike activities of longitudinal muscle cells were preserved in NaCl but not in Ca-deficient solution. 8 SP (10-10-10-9M) enhanced the amplitude of the excitatory junction potentials (e.j.ps) evoked by electrical field stimulation in longitudinal muscle cells with no change in the membrane potential and input resistance. SP (10-10-10-9M), however, did not change the amplitude of inhibitory junction potentials (i.j.ps) recorded from the circular muscle cells. 9 These results indicate that SP in relatively low concentrations acts on both smooth muscle cells and on excitatory neuro-effector transmission in the longitudinal muscle; the main site of the action of SP is probably the muscle membrane. PMID:6178458

Biodegradation of isopropanol and acetone under denitrifying conditions by Thauera sp. TK001 for nitrate-mediated microbially enhanced oil recovery.

PubMed

Fida, Tekle Tafese; Gassara, Fatma; Voordouw, Gerrit

2017-07-15

Amendment of reservoir fluid with injected substrates can enhance the growth and activity of microbes. The present study used isopropyl alcohol (IPA) or acetone to enhance the indigenous anaerobic nitrate-reducing bacterium Thauera sp. TK001. The strain was able to grow on IPA or acetone and nitrate. To monitor effects of strain TK001 on oil recovery, sand-packed columns containing heavy oil were flooded with minimal medium at atmospheric or high (400psi) pressure. Bioreactors were then inoculated with 0.5 pore volume (PV) of minimal medium containing Thauera sp. TK001 with 25mM of acetone or 22.2mM of IPA with or without 80mM nitrate. Incubation without flow for two weeks and subsequent injection with minimal medium gave an additional 17.0±6.7% of residual oil in place (ROIP) from low-pressure bioreactors and an additional 18.3% of ROIP from the high-pressure bioreactors. These results indicate that acetone or IPA, which are commonly used organic solvents, are good substrates for nitrate-mediated microbial enhanced oil recovery (MEOR), comparable to glucose, acetate or molasses, tested previously. This technology may be used for coupling biodegradation of IPA and/or acetone in waste streams to MEOR where these waste streams are generated in close proximity to an oil field. Copyright © 2017 Elsevier B.V. All rights reserved.

Complex mixtures of dissolved pesticides show potential aquatic toxicity in a synoptic study of Midwestern U.S. streams

USGS Publications Warehouse

Nowell, Lisa H.; Moran, Patrick W.; Schmidt, Travis S.; Norman, Julia E.; Nakagaki, Naomi; Shoda, Megan E.; Mahler, Barbara J.; Van Metre, Peter C.; Stone, Wesley W.; Sandstrom, Mark W.; Hladik, Michelle L.

2018-01-01

Aquatic organisms in streams are exposed to pesticide mixtures that vary in composition over time in response to changes in flow conditions, pesticide inputs to the stream, and pesticide fate and degradation within the stream. To characterize mixtures of dissolved-phase pesticides and degradates in Midwestern streams, a synoptic study was conducted at 100 streams during May–August 2013. In weekly water samples, 94 pesticides and 89 degradates were detected, with a median of 25 compounds detected per sample and 54 detected per site. In a screening-level assessment using aquatic-life benchmarks and the Pesticide Toxicity Index (PTI), potential effects on fish were unlikely in most streams. For invertebrates, potential chronic toxicity was predicted in 53% of streams, punctuated in 12% of streams by acutely toxic exposures. For aquatic plants, acute but likely reversible effects on biomass were predicted in 75% of streams, with potential longer-term effects on plant communities in 9% of streams. Relatively few pesticides in water—atrazine, acetochlor, metolachlor, imidacloprid, fipronil, organophosphate insecticides, and carbendazim—were predicted to be major contributors to potential toxicity. Agricultural streams had the highest potential for effects on plants, especially in May–June, corresponding to high spring-flush herbicide concentrations. Urban streams had higher detection frequencies and concentrations of insecticides and most fungicides than in agricultural streams, and higher potential for invertebrate toxicity, which peaked during July–August. Toxicity-screening predictions for invertebrates were supported by quantile regressions showing significant associations for the Benthic Invertebrate-PTI and imidacloprid concentrations with invertebrate community metrics for MSQA streams, and by mesocosm toxicity testing with imidacloprid showing effects on invertebrate communities at environmentally relevant concentrations. This study documents the most complex pesticide mixtures yet reported in discrete water samples in the U.S. and, using multiple lines of evidence, predicts that pesticides were potentially toxic to nontarget aquatic life in about half of the sampled streams.

Transpirational water loss in invaded and restored semiarid riparian forests

Treesearch

Georgianne W. Moore; M. Keith Owens

2011-01-01

The invasive tree, Tamarix sp., was introduced to the United States in the 1800s to stabilize stream banks. The riparian ecosystem adjacent to the middle Rio Grande River in central NewMexico consists of mature cottonwood (Populus fremontii ) gallery forests with a dense Tamarix understory. We hypothesized that Populus would compensate for reduced competition by...

Streaming potential generated by a pressure-driven flow over a super-hydrophobic surface

NASA Astrophysics Data System (ADS)

Zhao, Hui

2010-11-01

The streaming potential generated by a pressured-driven flow over a weakly charged striped slip-stick surface (the zeta potential of the surface is smaller than the thermal potential (25 mV) with an arbitrary double layer thickness is theoretically studied by solving the Poisson-Boltzmann equation and Stokes equation. A series solution of the streaming potential is derived. Approximate expressions for the streaming potential in the limits of thin double layers and thick double layers are also presented, in excellent agreement with the full solution. The streaming potential is compared against that over a homogenously charged smooth surface. Our results indicate that the streaming potential over a super-hydrophobic surface only can be enhanced when the liquid-gas interface is charged. In addition, as the double layer thickness increases, the advantage of the super-hydrophobic surface diminishes. The impact of a slip-stick surface on the streaming potential might provide guidance for designing novel and efficient microfludic energy conversion devices using a super-hydrophobic surface.

Involvement of substance P in neutral endopeptidase modulation of carotid body sensory responses to hypoxia.

PubMed

Kumar, G K; Kou, Y R; Overholt, J L; Prabhakar, N R

2000-01-01

Previously, we showed that carotid bodies express neutral endopeptidase (NEP)-like enzyme activity and that phosphoramidon, a potent inhibitor of NEP, potentiates the chemosensory response of the carotid body to hypoxia in vivo. NEP has been shown to hydrolyze methionine enkephalin (Met-Enk) and substance P (SP) in neuronal tissues. The purpose of the present study is to determine whether NEP hydrolyzes Met-Enk and SP in the carotid body and if so whether these peptides contribute to phosphoramidon-induced potentiation of the sensory response to hypoxia. Experiments were performed on carotid bodies excised from anesthetized adult cats (n = 72 carotid bodies). The hydrolysis of Met-Enk and SP was analyzed by HPLC. The results showed that both SP and Met-Enk were hydrolyzed by the carotid body, but the rate of Met-Enk hydrolysis was approximately fourfold higher than that of SP. Phosphoramidon (400 microM) markedly inhibited SP hydrolysis ( approximately 90%) but had only a marginal effect on Met-Enk hydrolysis ( approximately 15% inhibition). Hypoxia (PO(2), 68 +/- 6 Torr) as well as exogenous administration of SP (10 and 20 nmol) increased the sensory discharge of the carotid body in vitro. Sensory responses to hypoxia and SP (10 nmol) were potentiated by approximately 80 and approximately 275%, respectively (P < 0.01), in the presence of phosphoramidon. SP-receptor antagonists Spantide (peptidyl) and CP-96345 (nonpeptidyl) either abolished or markedly attenuated the phosphoramidon-induced potentiation of the sensory response of the carotid body to hypoxia as well as to SP. These results demonstrate that SP is a preferred substrate for NEP in the carotid body and that SP is involved in the potentiation of the hypoxic response of the carotid body by phosphoramidon.

Causes of acidification of four streams on Laurel Hilld in southwestern Pennsylvania

USGS Publications Warehouse

Sharpe, William E.; DeWalle, David R.; Leibfried, Robert T.; Dinicola, Richard S.; Kimmel, William G.; Sherwin, Lysle S.

1984-01-01

Atmospheric deposition, soils developed from bedrock, a natural bog, gas wells, and a ski area were all investigated as possible sources of water quality degradation for four streams on Laurel Hill in southwestern Pennsylvania where fish kills have been reported since 1960. An intensive study of the chemistry of atmospheric deposition, soil leachate, and stream water and fish populations was conducted on these basins during 1980–1981 with emphasis on dormant season periods with runoff from snowmelt and rain. Although bedrock geology was found to control the natural buffering capacity of these streams, only acid precipitation could be linked to sharp drops in pH and increases in total Al concentrations observed during stormflows in the poorly buffered streams. Three poorly buffered streams exhibited drops to pH 4.4 to 4.5 and increases in total Al concentrations up to 1.5 mg/L during observed peak flows. Mineral soil leachate from the three major soil series on the basins during this time exhibited a low pH of 4.3 and mean total Al concentrations of 3.6 mg/L, indicating stream response during storms was closely linked to chemistry of soil leachate. Poorly buffered streams did not support reproducing populations of trout (Salmonidae sp.) or other fishes. In contrast, one well-buffered stream (20 mg/L CaCO3) exhibited drops to pH 5.5 during peak flow and supported reproducing trout and sculpin (Cottus bairdi) populations. The acidification of the four streams studied was attributed to atmospheric deposition.

Synthetic extreme environments: overlooked sources of potential biotechnologically relevant microorganisms.

PubMed

Sibanda, Timothy; Selvarajan, Ramganesh; Tekere, Memory

2017-05-01

Synthetic extreme environments like carwash effluent tanks and drains are potential sources of biotechnologically important microorganisms and molecules which have, however, remained unexplored. Using culture- and molecular-based methods, a total of 17 bacterial isolates belonging to the genera Shewanella, Proteus, Paenibacillus, Enterobacter and Citrobacter, Aeromonas, Pseudomonas and Pantoea were identified. Hydrocarbon utilization and enzyme production screening assays showed that Aeromonas sp. CAC11, Paenibacillus sp. CAC12 and Paenibacillus sp. CAC13 and Citrobacter sp. PCW7 were able to degrade benzanthracene, naphthalene and diesel oil, Paenibacillus sp. CAC12 and Paenibacillus sp. CAC13 could produce cellulase enzyme, while Proteus sp. BPS2, Pseudomonas sp. SAS8 and Proteus sp. CAL3 could produce lipase. GC-MS analysis of bacterial secondary metabolites resulted in identification of 107 different compounds produced by Proteus sp. BPS2, Paenibacillus sp. CAC12, Pseudomonas sp. SAS8, Proteus sp. CAL3 and Paenibacillus sp. CAC13. Most of the compounds identified by both GC-MS and LC-MS have previously been determined to have antibacterial, antifungal and/or anticancer properties. Further, microbial metabolites which have previously been known to be produced only by plants or microorganisms found in natural extreme environments were also identified in this study. This research has revealed the immense bioresource potential of microorganisms inhabiting synthetic extreme environments. © 2017 The Authors. Microbial Biotechnology published by John Wiley & Sons Ltd and Society for Applied Microbiology.

Acute toxicity of cadmium, lead, zinc, and their mixtures to stream-resident fish and invertebrates

USGS Publications Warehouse

Mebane, Christopher A.; Dillon, Frank S.; Hennessy, Daniel P.

2012-01-01

The authors conducted 150 tests of the acute toxicity of resident fish and invertebrates to Cd, Pb, and Zn, separately and in mixtures, in waters from the South Fork Coeur d'Alene River watershed, Idaho, USA. Field-collected shorthead sculpin (Cottus confusus), westslope cutthroat trout (Oncorhynchus clarkii lewisi), two mayflies (Baetis tricaudatus and Rhithrogena sp.), a stonefly (Sweltsa sp.), a caddisfly (Arctopsyche sp.), a snail (Gyraulus sp.), and hatchery rainbow trout (Oncorhynchus mykiss), were tested with all three metals. With Pb, the mayflies (Drunella sp., Epeorus sp., and Leptophlebiidae), a Simuliidae black fly, a Chironomidae midge, a Tipula sp. crane fly, a Dytiscidae beetle, and another snail (Physa sp.), were also tested. Adult westslope cutthroat trout were captured to establish a broodstock to provide fry of known ages for testing. With Cd, the range of 96-h median effect concentrations (EC50s) was 0.4 to >5,329μg/L, and the relative resistances of taxa were westslope cutthroat trout ≈ rainbow trout ≈ sculpin << other taxa; with Pb, EC50s ranged from 47 to 3,323μg/L, with westslope cutthroat trout < rainbow trout < other taxa; and with Zn, EC50s ranged from 21 to 3,704μg/L, with rainbow trout < westslope cutthroat trout ≈ sculpin << other taxa. With swim-up trout fry, a pattern of decreasing resistance with increasing fish size was observed. In metal mixtures, the toxicities of the three metals were less than additive on a concentration-addition basis.

Remote Detection of Saline Intrusion in a Coastal Aquifer Using Borehole Measurements of Self-Potential

NASA Astrophysics Data System (ADS)

MacAllister, DJ.; Jackson, M. D.; Butler, A. P.; Vinogradov, J.

2018-03-01

Two years of self-potential (SP) measurements were made in a monitoring borehole in the coastal UK Chalk aquifer. The borehole SP data showed a persistent gradient with depth, and temporal variations with a tidal power spectrum consistent with ocean tides. No gradient with depth was observed at a second coastal monitoring borehole ca. 1 km further inland, and no gradient or tidal power spectrum were observed at an inland site ca. 80 km from the coast. Numerical modeling suggests that the SP gradient recorded in the coastal monitoring borehole is dominated by the exclusion-diffusion potential, which arises from the concentration gradient across a saline front in close proximity to, but not intersecting, the base of the borehole. No such saline front is present at the two other monitoring sites. Modeling further suggests that the ocean tidal SP response in the borehole, measured prior to breakthrough of saline water, is dominated by the exclusion-diffusion potential across the saline front, and that the SP fluctuations are due to the tidal movement of the remote front. The electrokinetic potential, caused by changes in hydraulic head across the tide, is one order of magnitude too small to explain the observed SP data. The results suggest that in coastal aquifers, the exclusion-diffusion potential plays a dominant role in borehole SP when a saline front is nearby. The SP gradient with depth indicates the close proximity of the saline front to the borehole and changes in SP at the borehole reflect changes in the location of the saline front. Thus, SP monitoring can be used to facilitate more proactive management of abstraction and saline intrusion in coastal aquifers.

Using self-potential housing technique to model water seepage at the UNHAS housing Antang area

NASA Astrophysics Data System (ADS)

Syahruddin, Muhammad Hamzah

2017-01-01

The earth's surface has an electric potential that is known as self-potentiall (SP). One of the causes of the electrical potential at the earth's surface is water seepage into the ground. Electrical potential caused by water velocity seepage into the ground known as streaming potential. How to model water seepage into the ground at the housing Unhas Antang? This study was conducted to answer these questions. The self-potential measurements performed using a simple digital voltmeter Sanwa brand PC500 with a precision of 0.01 mV. While the coordinates of measurements points are self-potential using Global Positioning System. Mmeasurements results thus obtained are plotted using surfer image distribution self-potential housing Unhas Antang. The self-potential data housing Unhas Antang processed by Forward Modeling methods to get a model of water infiltration into the soil. Housing Unhas Antang self-potential has a value of 5 to 23 mV. Self-potential measurements carried out in the rainy season so it can be assumed that the measurement results caused by the velocity water seepage into the ground. The results of modeling the velocity water seepage from the surface to a depth of 3 meters was 2.4 cm/s to 0.2 cm /s. Modeling results showed that the velocity water seepage of the smaller with depth.

Calibration of a modified temperature-light intensity logger for quantifying water electrical conductivity

NASA Astrophysics Data System (ADS)

Gillman, M. A.; Lamoureux, S. F.; Lafrenière, M. J.

2017-09-01

The Stream Temperature, Intermittency, and Conductivity (STIC) electrical conductivity (EC) logger as presented by Chapin et al. (2014) serves as an inexpensive (˜50 USD) means to assess relative EC in freshwater environments. This communication demonstrates the calibration of the STIC logger for quantifying EC, and provides examples from a month long field deployment in the High Arctic. Calibration models followed multiple nonlinear regression and produced calibration curves with high coefficient of determination values (R2 = 0.995 - 0.998; n = 5). Percent error of mean predicted specific conductance at 25°C (SpC) to known SpC ranged in magnitude from -0.6% to 13% (mean = -1.4%), and mean absolute percent error (MAPE) ranged from 2.1% to 13% (mean = 5.3%). Across all tested loggers we found good accuracy and precision, with both error metrics increasing with increasing SpC values. During 10, month-long field deployments, there were no logger failures and full data recovery was achieved. Point SpC measurements at the location of STIC loggers recorded via a more expensive commercial electrical conductivity logger followed similar trends to STIC SpC records, with 1:1.05 and 1:1.08 relationships between the STIC and commercial logger SpC values. These results demonstrate that STIC loggers calibrated to quantify EC are an economical means to increase the spatiotemporal resolution of water quality investigations.

Evaluation of outbreak detection performance using multi-stream syndromic surveillance for influenza-like illness in rural Hubei Province, China: a temporal simulation model based on healthcare-seeking behaviors.

PubMed

Fan, Yunzhou; Wang, Ying; Jiang, Hongbo; Yang, Wenwen; Yu, Miao; Yan, Weirong; Diwan, Vinod K; Xu, Biao; Dong, Hengjin; Palm, Lars; Nie, Shaofa

2014-01-01

Syndromic surveillance promotes the early detection of diseases outbreaks. Although syndromic surveillance has increased in developing countries, performance on outbreak detection, particularly in cases of multi-stream surveillance, has scarcely been evaluated in rural areas. This study introduces a temporal simulation model based on healthcare-seeking behaviors to evaluate the performance of multi-stream syndromic surveillance for influenza-like illness. Data were obtained in six towns of rural Hubei Province, China, from April 2012 to June 2013. A Susceptible-Exposed-Infectious-Recovered model generated 27 scenarios of simulated influenza A (H1N1) outbreaks, which were converted into corresponding simulated syndromic datasets through the healthcare-behaviors model. We then superimposed converted syndromic datasets onto the baselines obtained to create the testing datasets. Outbreak performance of single-stream surveillance of clinic visit, frequency of over the counter drug purchases, school absenteeism, and multi-stream surveillance of their combinations were evaluated using receiver operating characteristic curves and activity monitoring operation curves. In the six towns examined, clinic visit surveillance and school absenteeism surveillance exhibited superior performances of outbreak detection than over the counter drug purchase frequency surveillance; the performance of multi-stream surveillance was preferable to signal-stream surveillance, particularly at low specificity (Sp <90%). The temporal simulation model based on healthcare-seeking behaviors offers an accessible method for evaluating the performance of multi-stream surveillance.

Effects of heavy metals on benthic macroinvertebrate communities in New Zealand streams

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hickey, C.W.; Clements, W.H.

1998-11-01

The authors performed chemical analyses of heavy metals in water and periphyton, toxicity tests with Daphnia magna and an indigenous mayfly (Deleatidium sp.), and field surveys of benthic macroinvertebrates to estimate the degree of metal pollution in three catchments in the Coromandel Peninsula of New Zealand. Good agreement was found between toxicity tests and measures of benthic community structure, particularly at stations with the highest metal levels. Responses of benthic communities at stations with low or moderate levels of metal contamination were variable and were probably confounded by factors other than heavy metals. Effects of heavy metals on benthic communitiesmore » in New Zealand streams were similar to those reported for metal-polluted streams in North America and Europe, suggesting that responses to metal contamination are predictable. Abundance and species richness of mayflies, number of taxa in the orders Ephemeroptera, Plecoptera, and Trichoptera, and total taxonomic richness were the best indicators of heavy metals in New Zealand streams. In contrast, the quantitative macroinvertebrate community index (QMCI), a biotic index proposed for assessing effects of organic enrichment in New Zealand streams, could not distinguish between reference and metal-polluted streams. The poor performance of the QMCI was primarily due to incorrect tolerance scores for some taxa to heavy metals. Because of concerns regarding the subjective assignment of tolerance values to species, the authors recommend that tolerance values for dominant species in New Zealand streams should be verified experimentally in stream microcosms.« less

Amino terminus of substance P potentiates kainic acid-induced activity in the mouse spinal cord.

PubMed

Larson, A A; Sun, X

1992-12-01

Sensitization to the behavioral effects produced by repeated injections of kainic acid (KA) into the mouse spinal cord area has been previously shown to be abolished by pretreatment with capsaicin, a neurotoxin of substance P (SP)-containing primary afferent C-fibers. While SP has a variety of well characterized biological actions that are mediated by interactions of its COOH terminus with neurokinin receptors, more recently we have characterized an amino-terminally directed SP binding site. The present studies were initiated to determine whether behavioral sensitization to repeated injections of intrathecally administered KA is mediated by the COOH or NH2 terminal of SP. In the present studies, pretreatment with SP(1-7), an NH2-terminal fragment of SP, but not SP(5-11), a COOH-terminal fragment, potentiated KA-induced behavioral activity in mice. Pretreatment with [D-Pro2,D-Phe7]SP(1-7), an inhibitor of SP NH2-terminal binding, blocked the potentiative effect of SP(1-7) as well as the sensitization to repeated injections of KA. In contrast, [D-Pro2,D-Trp7,9]SP, a neurokinin antagonist, had little effect on behavioral sensitization to KA. The present study suggests that SP has an important modulatory role on excitatory amino acid activity in the spinal cord that is mediated by an action of the NH2 terminal of SP at a non-neurokinin receptor.

Self-potential investigations of a gravel bar in a restored river corridor

USGS Publications Warehouse

Linde, N.; Doetsch, J.; Jougnot, D.; Genoni, O.; Durst, Y.; Minsley, B.J.; Vogt, T.; Pasquale, N.; Luster, J.

2011-01-01

Self-potentials (SP) are sensitive to water fluxes and concentration gradients in both saturated and unsaturated geological media, but quantitative interpretations of SP field data may often be hindered by the superposition of different source contributions and time-varying electrode potentials. Self-potential mapping and close to two months of SP monitoring on a gravel bar were performed to investigate the origins of SP signals at a restored river section of the Thur River in northeastern Switzerland. The SP mapping and subsequent inversion of the data indicate that the SP sources are mainly located in the upper few meters in regions of soil cover rather than bare gravel. Wavelet analyses of the time-series indicate a strong, but non-linear influence of water table and water content variations, as well as rainfall intensity on the recorded SP signals. Modeling of the SP response with respect to an increase in the water table elevation and precipitation indicate that the distribution of soil properties in the vadose zone has a very strong influence. We conclude that the observed SP responses on the gravel bar are more complicated than previously proposed semi-empiric relationships between SP signals and hydraulic head or the thickness of the vadose zone. We suggest that future SP monitoring in restored river corridors should either focus on quantifying vadose zone processes by installing vertical profiles of closely spaced SP electrodes or by installing the electrodes within the river to avoid signals arising from vadose zone processes and time-varying electrochemical conditions in the vicinity of the electrodes. ?? 2011 Author(s).

Self-potential investigations of a gravel bar in a restored river corridor

USGS Publications Warehouse

Linde, N.; Doetsch, J.; Jougnot, D.; Genoni, O.; Durst, Y.; Minsley, Burke J.; Vogt, T.; Pasquale, N.; Luster, J.

2011-01-01

 Self-potentials (SP) are sensitive to water fluxes and concentration gradients in both saturated and unsaturated geological media, but quantitative interpretations of SP field data may often be hindered by the superposition of different source contributions and time-varying electrode potentials. Self-potential mapping and close to two months of SP monitoring on a gravel bar were performed to investigate the origins of SP signals at a restored river section of the Thur River in northeastern Switzerland. The SP mapping and subsequent inversion of the data indicate that the SP sources are mainly located in the upper few meters in regions of soil cover rather than bare gravel. Wavelet analyses of the time-series indicate a strong, but non-linear influence of water table and water content variations, as well as rainfall intensity on the recorded SP signals. Modeling of the SP response with respect to an increase in the water table elevation and precipitation indicate that the distribution of soil properties in the vadose zone has a very strong influence. We conclude that the observed SP responses on the gravel bar are more complicated than previously proposed semi-empiric relationships between SP signals and hydraulic head or the thickness of the vadose zone. We suggest that future SP monitoring in restored river corridors should either focus on quantifying vadose zone processes by installing vertical profiles of closely spaced SP electrodes or by installing the electrodes within the river to avoid signals arising from vadose zone processes and time-varying electrochemical conditions in the vicinity of the electrodes.

Role of substance P in neutral endopeptidase modulation of hypoxic response of the carotid body.

PubMed

Kumar, G K; Yu, R K; Overholt, J L; Prabhakar, N R

2000-01-01

Carotid body expresses neutral endopeptidase (NEP)-like enzyme activity and phosphoramidon, an inhibitor of NEP augments sensory response of the carotid body to hypoxia (Kumar et al., 1990). NEP hydrolyzes substance P (SP) and methionine enkephalin (Met-ENK) in the nervous system. In the present study, we determined whether NEP hydrolyzes Met-ENK and SP in the carotid body and whether these peptides contribute to the phosphoramidon-induced potentiation of the sensory response to hypoxia. Experiments were performed on carotid bodies excised from anaesthetized adult cats. HPLC analysis showed that both SP and Met-ENK were hydrolyzed by the carotid body. Phosphoramidon (400 microM) markedly inhibited SP (approximately 90%) but had only marginal effect on Met-ENK hydrolysis (approximately 15%). Sensory responses of the carotid body in vitro to hypoxia (pO2, 68 +/- 6 mmHg) and SP (10 nmoles) were potentiated by phosphoramidon by approximately 80% and approximately 275% respectively (p < 0.01). SP-receptor antagonist abolished phosphoramidon-induced potentiation of the sensory response to hypoxia as well as to SP. These results demonstrate that SP is a preferred substrate for NEP in the carotid body and SP plays a major role in the potentiation of the hypoxic response of the carotid body by phosphoramidon.

A Comparison of Streaming and Microelectrophoresis Methods for Obtaining the zeta Potential of Granular Porous Media Surfaces.

PubMed

Johnson

1999-01-01

The electrokinetic behavior of granular quartz sand in aqueous solution is investigated by both microelectrophoresis and streaming potential methods. zeta potentials of surfaces composed of granular quartz obtained via streaming potential methods are compared to electrophoretic mobility zeta potential values of colloid-sized quartz fragments. The zeta values generated by these alternate methods are in close agreement over a wide pH range and electrolyte concentrations spanning several orders of magnitude. Streaming measurements performed on chemically heterogeneous mixtures of physically homogeneous sand are shown to obey a simple mixing model based on the surface area-weighted average of the streaming potentials associated with the individual end members. These experimental results support the applicability of the streaming potential method as a means of determining the zeta potential of granular porous media surfaces. Copyright 1999 Academic Press.

Side population purified from hepatocellular carcinoma cells harbors cancer stem cell-like properties.

PubMed

Chiba, Tetsuhiro; Kita, Kaoru; Zheng, Yun-Wen; Yokosuka, Osamu; Saisho, Hiromitsu; Iwama, Atsushi; Nakauchi, Hiromitsu; Taniguchi, Hideki

2006-07-01

Recent advances in stem cell biology enable us to identify cancer stem cells in solid tumors as well as putative stem cells in normal solid organs. In this study, we applied side population (SP) cell analysis and sorting to established hepatocellular carcinoma (HCC) cell lines to detect subpopulations that function as cancer stem cells and to elucidate their roles in tumorigenesis. Among four cell lines analyzed, SP cells were detected in Huh7 (0.25%) and PLC/PRF/5 cells (0.80%), but not in HepG2 and Huh6 cells. SP cells demonstrated high proliferative potential and anti-apoptotic properties compared with those of non-SP cells. Immunocytochemistry examination showed that SP fractions contain a large number of cells presenting characteristics of both hepatocyte and cholangiocyte lineages. Non-obese diabetic/severe combined immunodeficiency (NOD/SCID) xenograft transplant experiments showed that only 1 x 10(3) SP cells were sufficient for tumor formation, whereas an injection of 1 x 10(6) non-SP cells did not initiate tumors. Re-analysis of SP cell-derived tumors showed that SP cells generated both SP and non-SP cells and tumor-initiating potential was maintained only in SP cells in serial transplantation. Microarray analysis discriminated a differential gene expression profile between SP and non-SP cells, and several so-called "stemness genes" were upregulated in SP cells in HCC cells. In conclusion, we propose that a minority population, detected as SP cells in HCC cells, possess extreme tumorigenic potential and provide heterogeneity to the cancer stem cell system characterized by distinct hierarchy.

Clogging of an Alpine streambed by silt-sized particles - Insights from laboratory and field experiments.

PubMed

Fetzer, Jasmin; Holzner, Markus; Plötze, Michael; Furrer, Gerhard

2017-12-01

Clogging of streambeds by suspended particles (SP) can cause environmental problems, as it can negatively influence, e.g., habitats for macrozoobenthos, fish reproduction and groundwater recharge. This especially applies in the case of silt-sized SP. Until now, most research has dealt with coarse SP and was carried out in laboratory systems. The aims of this study are to examine (1) whether physical clogging by silt-sized SP exhibits the same dynamics and patterns as by sand-sized SP, and (2) the comparability of results between laboratory and field experiments. We carried out vertical column experiments with sand-sized bed material and silt-sized SP, which are rich in mica minerals. In laboratory experiments, we investigated the degree of clogging quantified by the reduction of porosity and hydraulic conductivity and the maximum clogging depth as a function of size and shape of bed material, size of SP, pore water flow velocity, and concentration of calcium cations. The SP were collected from an Alpine sedimentation basin, where our field experiments were carried out. To investigate the clogging process in the field, we buried columns filled with sand-sized quartz in the stream bed. We found that the maximal bed-to-grain ratio where clogging still occurs is larger for silt-sized SP than for sand-sized SP. The observed clogging depths and the reduction of flow rate through the column from our laboratory experiments were comparable to those from the field. However, our field results showed that the extent of clogging strongly depends on the naturally-occurring hydrological dynamics. The field location was characterized by a more polydisperse suspension, a strongly fluctuating water regime, and high SP concentrations at times, leading to more heterogeneous and more pronounced clogging when compared to laboratory results. Copyright © 2017 The Authors. Published by Elsevier Ltd.. All rights reserved.

Interspecies modulation of bacterial development through iron competition and siderophore piracy

PubMed Central

Traxler, Matthew F.; Seyedsayamdost, Mohammad R.; Clardy, Jon; Kolter, Roberto

2012-01-01

Summary While soil-dwelling actinomycetes are renowned for secreting natural products, little is known about the roles of these molecules in mediating actinomycete interactions. In a previous co-culture screen, we found that one actinomycete, Amycolatopsis sp. AA4, inhibited aerial hyphae formation in adjacent colonies of Streptomyces coelicolor. A siderophore, amychelin, mediated this developmental arrest. Here we present genetic evidence that confirms the role of the amc locus in the production of amychelin and in the inhibition of S. coelicolor development. We further characterize the Amycolatopsis sp. AA4 - S. coelicolor interaction by examining expression of developmental and iron acquisition genes over time in co-culture. Manipulation of iron availability and/or growth near Amycolatopsis sp. AA4 led to alterations in expression of the critical developmental gene bldN, and other key down-stream genes in the S. coelicolor transcriptional cascade. In Amycolatopsis sp. AA4, siderophore genes were down-regulated when grown near S. coelicolor, leading us to find that deferrioxamine E, produced by S. coelicolor, could be readily utilized by Amycolatopsis sp. AA4. Collectively these results suggest that competition for iron via siderophore piracy and species-specific siderophores can alter patterns of gene expression and morphological differentiation during actinomycete interactions. PMID:22931126

Dermocystidium sp. infection in Blue Ridge Sculpin captured in Maryland

USGS Publications Warehouse

Blazer, Vicki S.; Hitt, Nathaniel P.; Snyder, Craig D.; Snook, Erin; Adams, Cynthia

2016-01-01

Raised pale cysts were observed on Blue Ridge Sculpin Cottus caeruleomentum during stream fish community surveys in Catoctin Mountain Park, Maryland. When examined histologically, preserved sculpin exhibited multiple cysts containing spherical endospores with a refractile central body characteristic of Dermocystidiumspp. Cysts were not observed on the gills or internally. The portion of the watershed in which affected sculpin were observed contained lower than expected numbers of sculpin, raising concerns about the population effects of this infection. A nearby stream lacked sculpin even though they are common in this region, further suggesting the possibility of regional effects. This is the first report of a Dermocystidium infecting any fish species in the eastern United States.

Constraints upon the Response of Fish and Crayfish to Environmental Flow Releases in a Regulated Headwater Stream Network

PubMed Central

Chester, Edwin T.; Matthews, Ty G.; Howson, Travis J.; Johnston, Kerrylyn; Mackie, Jonathon K.; Strachan, Scott R.; Robson, Belinda J.

2014-01-01

In dry climate zones, headwater streams are often regulated for water extraction causing intermittency in perennial streams and prolonged drying in intermittent streams. Regulation thereby reduces aquatic habitat downstream of weirs that also form barriers to migration by stream fauna. Environmental flow releases may restore streamflow in rivers, but are rarely applied to headwaters. We sampled fish and crayfish in four regulated headwater streams before and after the release of summer-autumn environmental flows, and in four nearby unregulated streams, to determine whether their abundances increased in response to flow releases. Historical data of fish and crayfish occurrence spanning a 30 year period was compared with contemporary data (electrofishing surveys, Victoria Range, Australia; summer 2008 to summer 2010) to assess the longer–term effects of regulation and drought. Although fish were recorded in regulated streams before 1996, they were not recorded in the present study upstream or downstream of weirs despite recent flow releases. Crayfish (Geocharax sp. nov. 1) remained in the regulated streams throughout the study, but did not become more abundant in response to flow releases. In contrast, native fish (Gadopsis marmoratus, Galaxias oliros, Galaxias maculatus) and crayfish remained present in unregulated streams, despite prolonged drought conditions during 2006–2010, and the assemblages of each of these streams remained essentially unchanged over the 30 year period. Flow release volumes may have been too small or have operated for an insufficient time to allow fish to recolonise regulated streams. Barriers to dispersal may also be preventing recolonisation. Indefinite continuation of annual flow releases, that prevent the unnatural cessation of flow caused by weirs, may eventually facilitate upstream movement of fish and crayfish in regulated channels; but other human–made dispersal barriers downstream need to be identified and ameliorated, to allow native fish to fulfil their life cycles in these headwater streams. PMID:24647407

Preparation and characterization of methacrylate hydrogels for zeta potential control

NASA Technical Reports Server (NTRS)

Gregonis, D. E.; Ma, S. M.; Vanwagenen, R.; Andrade, J. D.

1976-01-01

A technique based on the measurement of streaming potentials has been developed to evaluate the effects of hydrophilic coatings on electroosmotic flow. The apparatus and procedure are described as well as some results concerning the electrokinetic potential of glass capillaries as a function of ionic strength, pH, and temperature. The effect that turbulence and entrance flow conditions have on accurate streaming potential measurements is discussed. Various silane adhesion promoters exhibited only a slight decrease in streaming potential. A coating utilizing a glycidoxy silane base upon which methylcellulose is applied affords a six-fold decrease over uncoated tubes. Hydrophilic methacrylate gels show similar streaming potential behavior, independent of the water content of the gel. By introduction of positive or negative groups into the hydrophilic methacrylate gels, a range of streaming potential values are obtained having absolute positive or negative signs.

Quantifying tidal stream disruption in a simulated Milky Way

NASA Astrophysics Data System (ADS)

Sandford, Emily; Küpper, Andreas H. W.; Johnston, Kathryn V.; Diemand, Jürg

2017-09-01

Simulations of tidal streams show that close encounters with dark matter subhaloes induce density gaps and distortions in on-sky path along the streams. Accordingly, observing disrupted streams in the Galactic halo would substantiate the hypothesis that dark matter substructure exists there, while in contrast, observing collimated streams with smoothly varying density profiles would place strong upper limits on the number density and mass spectrum of subhaloes. Here, we examine several measures of stellar stream 'disruption' and their power to distinguish between halo potentials with and without substructure and with different global shapes. We create and evolve a population of 1280 streams on a range of orbits in the Via Lactea II simulation of a Milky Way-like halo, replete with a full mass range of Λcold dark matter subhaloes, and compare it to two control stream populations evolved in smooth spherical and smooth triaxial potentials, respectively. We find that the number of gaps observed in a stellar stream is a poor indicator of the halo potential, but that (I) the thinness of the stream on-sky, (II) the symmetry of the leading and trailing tails and (III) the deviation of the tails from a low-order polynomial path on-sky ('path regularity') distinguish between the three potentials more effectively. We furthermore find that globular cluster streams on low-eccentricity orbits far from the galactic centre (apocentric radius ˜30-80 kpc) are most powerful in distinguishing between the three potentials. If they exist, such streams will shortly be discoverable and mapped in high dimensions with near-future photometric and spectroscopic surveys.

Study on phosphorus loadings in ten natural and agricultural watersheds in subtropical region of China.

PubMed

Li, Yuyuan; Meng, Cen; Gao, Ru; Yang, Wen; Jiao, Junxia; Li, Yong; Wang, Yi; Wu, Jinshui

2014-05-01

Water eutrophication in subtropical regions of southern China threatens watershed health and is of major concern. However, annual phosphorus (P) loading and its dominant causes are still unclear, especially at the watershed scale. In this study, we investigated dynamic P loadings and associated factors (e.g., land use, livestock production, and runoff depth) in ten watersheds that varied in area from 9 to 5,212 ha in a hilly area of Hunan Province, China. A flowmeter was installed at the outlet of each watershed, and total P (TP) and soluble P (SP) concentrations were monitored periodically from June 2010 to October 2012. The results showed that annual P loadings (APLs) in the ten watersheds ranged from 22.8 to 247.8 kg P/km(2) and that P loss primarily occurred from April to June of each year during the main rainfall season in the study area. In addition, the average eutrophication (>0.05 mg P/L) ratio for stream waters was 86.7 % during the study period, which was indicative of a potentially serious condition for the local water environments. Annual P loadings were linearly related to livestock density (LD; R = 0.92, p < 0.01), whereas the eutrophication ratio of stream water was significantly (p < 0.05) correlated with LD (R = 0.61), percentage cropland (R = 0.71), and percentage forest cover (R = -0.68). Thus, it is concluded that the control of livestock production has the greatest potential for reducing P loadings in watersheds in this subtropical area. This will be beneficial to the amelioration and protection of local environment.

Comparison of Three Model Concepts for Streaming Potential in Unsaturated Porous Media

NASA Astrophysics Data System (ADS)

Huisman, J. A.; Satenahalli, P.; Zimmermann, E.; Vereecken, H.

2017-12-01

Streaming potential is the electric potential generated by fluid flow in a charged porous medium. Although streaming potential in saturated conditions is well understood, there still is considerable debate about the adequate modelling of streaming potential signals in unsaturated soil because different concepts are available to estimate the effective excess charge in unsaturated conditions. In particular, some studies have relied on the volumetric excess charge, whereas others proposed to use the flux-averaged excess charge derived from the water retention or relative permeability function. The aim of this study is to compare measured and modelled streaming potential signals for two different flow experiments with sand. The first experiment is a primary gravity drainage of a long column equipped with non-polarizing electrodes and tensiometers, as presented in several previous studies. Expected differences between the three concepts for the effective excess charge are only moderate for this set-up. The second experiment is a primary drainage of a short soil column equipped with non-polarizing electrodes and tensiometers using applied pressure, where differences between the three concepts are expected to be larger. A comparison of the experimental results with a coupled model of streaming potential for 1D flow problems will provide insights in the ability of the three model concepts for effective excess charge to describe observed streaming potentials.

In vitro activities of kappa-carrageenan isolated from red marine alga Hypnea musciformis: Antimicrobial, anticancer and neuroprotective potential.

PubMed

Souza, Ricardo Basto; Frota, Annyta Fernandes; Silva, Joana; Alves, Celso; Neugebauer, Agnieszka Zofia; Pinteus, Susete; Rodrigues, José Ariévilo Gurgel; Cordeiro, Edna Maria Silva; de Almeida, Raimundo Rafael; Pedrosa, Rui; Benevides, Norma Maria Barros

2018-06-01

This study assessed the antioxidant, antimicrobial, anticancer and neuroprotective activities of the kappa(k)-carrageenan isolated from the red alga Hypnea musciformis (Hm-SP). The chemical spectrum of the k-carrageenan from Hm-SP was confirmed by Fourier transform infrared (FT-IR) spectroscopy. Hm-SP revealed an antibacterial and antifungal action against Staphylococcus aureus and Candida albicans, respectively. Hm-SP did not promoted cytotoxic effects against Human breast cancer (MCF-7) and Human neuroblastoma (SH-SY5Y) cell-lines. However, it was observed a significant reduction of the cellular proliferation capacity in these cancer cells in presence of the Hm-SP. Furthermore, Hm-SP showed neuroprotective activity in 6-hydroxydopamine-induced neurotoxicity on SH-SY5Y cells by modulation of the mitochondria transmembrane potential and reducing Caspase 3 activity. In addition, Hm-SP demonstrates low antioxidant potential and did not induce significant cytotoxic effects or changes in the cell proliferation on Balb/c 3T3 mouse fibroblast cell-line. In summary, our data suggest that Hm-SP shows antimicrobial, anticancer and neuprotective activities. Copyright © 2018 Elsevier B.V. All rights reserved.

Modeling the Gravitational Potential of a Cosmological Dark Matter Halo with Stellar Streams

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sanderson, Robyn E.; Hartke, Johanna; Helmi, Amina, E-mail: robyn@astro.columbia.edu

2017-02-20

Stellar streams result from the tidal disruption of satellites and star clusters as they orbit a host galaxy, and can be very sensitive probes of the gravitational potential of the host system. We select and study narrow stellar streams formed in a Milky-Way-like dark matter halo of the Aquarius suite of cosmological simulations, to determine if these streams can be used to constrain the present day characteristic parameters of the halo’s gravitational potential. We find that orbits integrated in both spherical and triaxial static Navarro–Frenk–White potentials reproduce the locations and kinematics of the various streams reasonably well. To quantify thismore » further, we determine the best-fit potential parameters by maximizing the amount of clustering of the stream stars in the space of their actions. We show that using our set of Aquarius streams, we recover a mass profile that is consistent with the spherically averaged dark matter profile of the host halo, although we ignored both triaxiality and time evolution in the fit. This gives us confidence that such methods can be applied to the many streams that will be discovered by the Gaia mission to determine the gravitational potential of our Galaxy.« less

Black hole algorithm for determining model parameter in self-potential data

NASA Astrophysics Data System (ADS)

Sungkono; Warnana, Dwa Desa

2018-01-01

Analysis of self-potential (SP) data is increasingly popular in geophysical method due to its relevance in many cases. However, the inversion of SP data is often highly nonlinear. Consequently, local search algorithms commonly based on gradient approaches have often failed to find the global optimum solution in nonlinear problems. Black hole algorithm (BHA) was proposed as a solution to such problems. As the name suggests, the algorithm was constructed based on the black hole phenomena. This paper investigates the application of BHA to solve inversions of field and synthetic self-potential (SP) data. The inversion results show that BHA accurately determines model parameters and model uncertainty. This indicates that BHA is highly potential as an innovative approach for SP data inversion.

Milky Way mass and potential recovery using tidal streams in a realistic halo

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bonaca, Ana; Geha, Marla; Küpper, Andreas H. W.

2014-11-01

We present a new method for determining the Galactic gravitational potential based on forward modeling of tidal stellar streams. We use this method to test the performance of smooth and static analytic potentials in representing realistic dark matter halos, which have substructure and are continually evolving by accretion. Our FAST-FORWARD method uses a Markov Chain Monte Carlo algorithm to compare, in six-dimensional phase space, an 'observed' stream to models created in trial analytic potentials. We analyze a large sample of streams that evolved in the Via Lactea II (VL2) simulation, which represents a realistic Galactic halo potential. The recovered potentialmore » parameters are in agreement with the best fit to the global, present-day VL2 potential. However, merely assuming an analytic potential limits the dark matter halo mass measurement to an accuracy of 5%-20%, depending on the choice of analytic parameterization. Collectively, the mass estimates using streams from our sample reach this fundamental limit, but individually they can be highly biased. Individual streams can both under- and overestimate the mass, and the bias is progressively worse for those with smaller perigalacticons, motivating the search for tidal streams at galactocentric distances larger than 70 kpc. We estimate that the assumption of a static and smooth dark matter potential in modeling of the GD-1- and Pal5-like streams introduces an error of up to 50% in the Milky Way mass estimates.« less

Clinical significance of the summating potential-action potential ratio and the action potential latency difference for condensation and rarefaction clicks in Meniere's disease.

PubMed

Ohashi, Toru; Nishino, Hirohito; Arai, Yoko; Hyodo, Makoto; Takatsu, Mitsuharu

2009-04-01

This study was aimed to elucidate the diagnostic significance of the summating potential (SP)-action potential (AP) ratio and the AP latency difference between condensation and rarefaction clicks (AP con-rar difference) in Meniere's disease. The AP and SP were recorded transtympanically in 67 patients with definite Meniere's disease. The SP/AP ratio and the AP con-rar difference were assessed in terms of 1) their interrelationship, 2) their relationship to hearing level, and 3) the rate of occurrence of abnormal values according to the stages of Meniere's disease. No correlation was found between the SP/AP ratio and the AP con-rar difference. Neither the SP/AP ratio in general nor the AP con-rar difference was correlated with the hearing level. However, enhanced values of the SP/AP ratio (0.35 or higher) were moderately correlated with the hearing level (r = 0.51), and their occurrence rate was 55.2%. An increased AP con-rar difference (0.13 ms or longer) was not correlated with the hearing level, and its occurrence rate was 50.2%; it appeared most frequently at stage 3 (p <0.05). An enhanced SP/AP ratio might not always indicate the presence of endolymphatic hydrops associated with an increase in endolymphatic pressure. An increased AP con-rar difference might reflect the presence of a biased basilar membrane resulting from an increased endolymphatic pressure, and hence it is diagnostically essential to simultaneously evaluate the SP/AP ratio and the AP con-rar difference.

Two species of Nilothauma Kieffer (Diptera, Chironomidae) from Japan, with description of a new species.

PubMed

Niitsuma, Hiromi

2016-02-16

The male and female adults and pupa of Nilothauma niidaense n. sp. are described and illustrated on the basis of the material collected from a fontal stream in Fukushima Prefecture, Japan. N. sasai Adam & Sæther is treated as a junior synonym of N. hibaratertium Sasa, of which the male is redescribed. The Adam & Sæther key to Nilothauma males is revised.

Spatial and seasonal variations in mercury methylation and microbial community structure in a historic mercury mining area, Yolo County, California

USGS Publications Warehouse

Holloway, J.M.; Goldhaber, M.B.; Scow, K.M.; Drenovsky, R.E.

2009-01-01

The relationships between soil parent lithology, nutrient concentrations, microbial biomass and community structure were evaluated in soils from a small watershed impacted by historic Hg mining. Upland and wetland soils, stream sediments and tailings were collected and analyzed for nutrients (DOC, SO4=, NO3-), Hg, MeHg, and phospholipid fatty acids (PLFA). Stream sediment was derived from serpentinite, siltstone, volcanic rocks and mineralized serpentine with cinnabar, metacinnabar and other Hg phases. Soils from different parent materials had distinct PLFA biomass and community structures that are related to nutrient concentrations and toxicity effects of trace metals including Hg. The formation of MeHg appears to be most strongly linked to soil moisture, which in turn has a correlative relationship with PLFA biomass in wetland soils. The greatest concentrations of MeHg (> 0.5??ng g- 1 MeHg) were measured in wetland soils and soil with a volcanic parent (9.5-37????g g- 1 Hg). Mercury methylation was associated with sulfate-reducing bacteria, including Desulfobacter sp. and Desulfovibrio sp., although these organisms are not exclusively responsible for Hg methylation. Statistical models of the data demonstrated that soil microbial communities varied more with soil type than with season.

Two new endangered species of Anomaloglossus (Anura: Aromobatidae) from Roraima State, northern Brazil.

PubMed

Fouquet, Antoine; Souza, Sergio Marques; Nunes, Pedro M Sales; Kok, Philippe J R; Curcio, Felipe Franco; De Carvalho, Celso Morato; Grant, Taran; Rodrigues, Miguel Trefaut

2015-03-05

We describe two new species of Anomaloglossus from Roraima State, Brazil, that are likely endemic to single mountains currently isolated among lowland forest and savanna ecosystems. The first species, Anomaloglossus tepequem sp. nov. was collected in 1986 and 1992 along a single stream at >500 m elevation on a tepui-like mountain named Tepequém, but was not detected during recent investigations. It is mainly diagnosed from other Anomaloglossus species by its well developed foot webbing, immaculate cream abdomen colouration and small body size (males: 18.2-20.1 mm, females: 21.7-24.5). The second species, Anomaloglossus apiau sp. nov. was found along several streams between 500 and 1400 m elevation on Serra do Apiaú, and is mainly diagnosed from congeners by its weakly webbed feet, males with swollen third finger and ventrolateral stripe formed by white dots, and its advertisement call; a long trill (up to almost 40 s) consisting of pairs of very short pulses. The discovery of these two apparently microendemic species suggests that additional Anomaloglossus species remain to be described in the Guiana Shield. Both species should be considered critically endangered given their seemingly reduced range size, association with highland habitat, and the anthropogenic pressure they currently face.

Seven new species of Night Frogs (Anura, Nyctibatrachidae) from the Western Ghats Biodiversity Hotspot of India, with remarkably high diversity of diminutive forms

PubMed Central

Garg, Sonali; Suyesh, Robin; Sukesan, Sandeep

2017-01-01

The Night Frog genus Nyctibatrachus (Family Nyctibatrachidae) represents an endemic anuran lineage of the Western Ghats Biodiversity Hotspot, India. Until now, it included 28 recognised species, of which more than half were described recently over the last five years. Our amphibian explorations have further revealed the presence of undescribed species of Nights Frogs in the southern Western Ghats. Based on integrated molecular, morphological and bioacoustic evidence, seven new species are formally described here as Nyctibatrachus athirappillyensis sp. nov., Nyctibatrachus manalari sp. nov., Nyctibatrachus pulivijayani sp. nov., Nyctibatrachus radcliffei sp. nov., Nyctibatrachus robinmoorei sp. nov., Nyctibatrachus sabarimalai sp. nov. and Nyctibatrachus webilla sp. nov., thereby bringing the total number of valid Nyctibatrachus species to 35 and increasing the former diversity estimates by a quarter. Detailed morphological descriptions, comparisons with other members of the genus, natural history notes, and genetic relationships inferred from phylogenetic analyses of a mitochondrial dataset are presented for all the new species. Additionally, characteristics of male advertisement calls are described for four new and three previously known species. Among the new species, six are currently known to be geographically restricted to low and mid elevation regions south of Palghat gap in the states of Kerala and Tamil Nadu, and one is probably endemic to high-elevation mountain streams slightly northward of the gap in Tamil Nadu. Interestingly, four new species are also among the smallest known Indian frogs. Hence, our discovery of several new species, particularly of easily overlooked miniaturized forms, reiterates that the known amphibian diversity of the Western Ghats of India still remains underestimated. PMID:28243532

Non-ureolytic calcium carbonate precipitation by Lysinibacillus sp. YS11 isolated from the rhizosphere of Miscanthus sacchariflorus.

PubMed

Lee, Yun Suk; Kim, Hyun Jung; Park, Woojun

2017-06-01

Although microbially induced calcium carbonate precipitation (MICP) through ureolysis has been widely studied in environmental engineering fields, urea utilization might cause environmental problems as a result of ammonia and nitrate production. In this study, many non-ureolytic calcium carbonate-precipitating bacteria that induced an alkaline environment were isolated from the rhizosphere of Miscanthus sacchariflorus near an artificial stream and their ability to precipitate calcium carbonate minerals with the absence of urea was investigated. MICP was observed using a phase-contrast microscope and ion-selective electrode. Only Lysinibacillus sp. YS11 showed MICP in aerobic conditions. Energy dispersive X-ray spectrometry and X-ray diffraction confirmed the presence of calcium carbonate. Field emission scanning electron microscopy analysis indicated the formation of morphologically distinct minerals around cells under these conditions. Monitoring of bacterial growth, pH changes, and Ca 2+ concentrations under aerobic, hypoxia, and anaerobic conditions suggested that strain YS11 could induce alkaline conditions up to a pH of 8.9 and utilize 95% of free Ca 2+ only under aerobic conditions. Unusual Ca 2+ binding and its release from cells were observed under hypoxia conditions. Biofilm and extracellular polymeric substances (EPS) formation were enhanced during MICP. Strain YS11 has resistance at high pH and in high salt concentrations, as well as its spore-forming ability, which supports its potential application for self-healing concrete.

Denitrification potential in sediments of headwater streams in the southern appalachian mountains, USA

Treesearch

Lara A. Martin; Patrick J. Mulholland; Jackson R. Webster; H. Maurice Vallett

2001-01-01

We investigated variations in resource availability (NOa-N and labile organic C [LOCJ] as determinants of potential denitrification in stream sediments in the southern Appalachian Mountains, USA. stream-water and sediments were sampled seasonally in 2 streams of contrasting NO3,-N availability, Noland Creek (high NO

Zinc Finger Independent Genome-Wide Binding of Sp2 Potentiates Recruitment of Histone-Fold Protein Nf-y Distinguishing It from Sp1 and Sp3

PubMed Central

Finkernagel, Florian; Stiewe, Thorsten; Nist, Andrea; Suske, Guntram

2015-01-01

Transcription factors are grouped into families based on sequence similarity within functional domains, particularly DNA-binding domains. The Specificity proteins Sp1, Sp2 and Sp3 are paradigmatic of closely related transcription factors. They share amino-terminal glutamine-rich regions and a conserved carboxy-terminal zinc finger domain that can bind to GC rich motifs in vitro. All three Sp proteins are ubiquitously expressed; yet they carry out unique functions in vivo raising the question of how specificity is achieved. Crucially, it is unknown whether they bind to distinct genomic sites and, if so, how binding site selection is accomplished. In this study, we have examined the genomic binding patterns of Sp1, Sp2 and Sp3 in mouse embryonic fibroblasts by ChIP-seq. Sp1 and Sp3 essentially occupy the same promoters and localize to GC boxes. The genomic binding pattern of Sp2 is different; Sp2 primarily localizes at CCAAT motifs. Consistently, re-expression of Sp2 and Sp3 mutants in corresponding knockout MEFs revealed strikingly different modes of genomic binding site selection. Most significantly, while the zinc fingers dictate genomic binding of Sp3, they are completely dispensable for binding of Sp2. Instead, the glutamine-rich amino-terminal region is sufficient for recruitment of Sp2 to its target promoters in vivo. We have identified the trimeric histone-fold CCAAT box binding transcription factor Nf-y as the major partner for Sp2-chromatin interaction. Nf-y is critical for recruitment of Sp2 to co-occupied regulatory elements. Equally, Sp2 potentiates binding of Nf-y to shared sites indicating the existence of an extensive Sp2-Nf-y interaction network. Our results unveil strikingly different recruitment mechanisms of Sp1/Sp2/Sp3 transcription factor members uncovering an unexpected layer of complexity in their binding to chromatin in vivo. PMID:25793500

Assessment of tolerant sunfish populations (Lepomis sp.) inhabiting selenium-laden coal ash effluents. 1. Hematological and population level assessment.

PubMed

Lohner, T W; Reash, R J; Willet, V E; Rose, L A

2001-11-01

Sunfish were collected from coal ash effluent-receiving streams and Ohio River watershed reference sites to assess the effects of exposure to low-level selenium concentrations. Selenium, copper, and arsenic concentrations were statistically higher in tissue samples from exposed fish than in reference fish. Leukopenia, lymphocytosis, and neutropenia were evident in exposed fish and were indicative of metal exposure and effect. White blood cell counts and percent lymphocyte values were significantly correlated with liver selenium concentrations. Plasma protein levels were significantly lower in exposed fish than in fish from the Ohio River, indicating that exposed fish may have been nutritionally stressed. Condition factors for fish from the ash pond-receiving streams were the same as, or lower than, those of fish from the reference sites. There was no evidence that the growth rate of fish in the receiving streams differed from that of fish in the reference streams. Despite liver selenium concentrations which exceeded reported toxicity thresholds and evidence of significant hematological changes, there were no significant differences in fish condition factors, liver-somatic indices, or length-weight regressions related to selenium.

Assessing Stream Restoration Potential of Recreational Enhancements on an Urban Stream, Springfield, OH

NASA Astrophysics Data System (ADS)

Ritter, J. B.; Evelsizor, A.; Minter, K.; Rigsby, C.; Shaw, K.; Shearer, K.

2010-12-01

Restoration potential of urban streams is inherently constrained by urban infrastructure. Roads and built structures may necessitate a static stream planform while water, sewage, and electrical utilities buried in the stream channel require a stable grade. A privately-led initiative to improve the recreational potential of a 9-km reach of Buck Creek and its tributary Beaver Creek in Springfield, Ohio, includes the modification of four lowhead dams with hydraulic heights up to 3 m. Modifications to the dams include replacing their hydraulic height with a series of drop structures engineered to create hydraulics conducive to kayak play. Two of the lowhead dams have been modified to date. The purpose of this study is to assess the potential benefits of modifications designed for their recreational value for stream restoration. The drop structure is a constructed channel constriction comprised of a hard step in the long stream profile immediately upstream of a scour pool, forming a morphologic sequence of constriction, step, and pool. Up to 4 drop structures are used along a given stream reach, constructed in the area of the former dam, its scour pool and a portion of the impounded area. Though not designed for stream restoration purposes, these structures potentially act as series a riffle-pool sequences. Changes in the stream habitat, water chemistry, and macroinvertebrates in response to dam modification highlight the potential for incorporating stream restoration into the engineering design. Following modification of two of the dams, the in-stream habitat quality, as measured by physical and biological indices, increased at one site and decreased at the other site, depending on whether the uppermost drop structure at the site reduced or expanded the impounded area. In the best case, channel sands and gravels, free of fine sand, silt, and organics, have deposited in a crescentic-shaped bar paralleling and grading to the constriction and step. Greater abundance and diversity of pollution-intolerant macroinvertebrates, supported by higher dissolved oxygen in the substrate, characterizes riffles at these sites.

Cyanomargarita gen. nov. (Nostocales, Cyanobacteria): convergent evolution resulting in a cryptic genus.

PubMed

Shalygin, Sergei; Shalygina, Regina; Johansen, Jeffrey R; Pietrasiak, Nicole; Berrendero Gómez, Esther; Bohunická, Markéta; Mareš, Jan; Sheil, Christopher A

2017-08-01

Two populations of Rivularia-like cyanobacteria were isolated from ecologically distinct and biogeographically distant sites. One population was from an unpolluted stream in the Kola Peninsula of Russia, whereas the other was from a wet wall in the Grand Staircase-Escalante National Monument, a desert park-land in Utah. Though both were virtually indistinguishable from Rivularia in field and cultured material, they were both phylogenetically distant from Rivularia and the Rivulariaceae based on both 16S rRNA and rbcLX phylogenies. We here name the new cryptic genus Cyanomargarita gen. nov., with type species C. melechinii sp. nov., and additional species C. calcarea sp. nov. We also name a new family for these taxa, the Cyanomargaritaceae. © 2017 Phycological Society of America.

A Critically Endangered new dragonfly species from Morocco: Onychogomphus boudoti sp. nov. (Odonata: Gomphidae).

PubMed

Ferreira, Sónia; Velo-Antón, Guillermo; Brochard, Christophe; Vieira, Cristiana; Alves, Paulo Célio; Thompson, David J; Watts, Phillip C; Brito, José Carlos

2014-08-25

Both sexes of Onychogomphus boudoti sp. nov. Ferreira (Odonata: Anisoptera: Gomphidae) and exuviae are described and illustrated from a single locality in Morocco. This newly discovered species differs markedly from other Onychogomphus species by the morphology of the male epiproct and the female vulvar scale. It is genetically distinct in the mitochondrial DNA and the nuclear PRMT gene from all other Western Palaearctic Onychogomphus species. The known distribution of the new species is confined to a small stream with unusual habitat characteristics in the vicinity of Khenifra, in the Middle Atlas, where it experiences low population size and limited genetic diversity. We suggest listing this species both locally and globally as "Critically Endangered" [CR (B1, B2 + abiii)] following the IUCN Red List Categories and Criteria. 

Sensory Processing and Its Relationship with Children's Daily Life Participation.

PubMed

Chien, Chi-Wen; Rodger, Sylvia; Copley, Jodie; Branjerdporn, Grace; Taggart, Caitlin

2016-01-01

To investigate whether children with probable or definite differences in sensory processing (SP) had participation restrictions, and the relationship between Short Sensory Profile (SSP) scores and children's participation. The participants were parents of 64 children (mean age 8 years 1 month); 36 with potential impairments in regulating sensory input and filtering out unnecessary stimuli (29 boys, 7 girls) and 28 with typical SP abilities (25 boys, 3 girls). Parents' completed the SSP and Participation in Childhood Occupations Questionnaire (PICO-Q). The SSP score was used to categorize children as potential SP impairment group and typical SP ability group. Children categorized as having probable or definite differences in SP exhibited significantly lower participation levels and enjoyment than children categorized as having typical SP abilities. However, participation frequency between both groups was similar. Six out of the seven SP impairment types had small to moderate correlations with children's participation (r = 0.25-0.48, p < 0.05). Multiple regression analyses indicated that only three impairment types (Underresponsive/Seeks Sensation, Low Energy/Weak, and Visual/Auditory Sensitivity) were significant predictors of PICO-Q participation domains. The results suggest that children with potential SP impairments have restrictions in the degree of participation and enjoyment. Three SP types were related to specific participation domains, but they explained a small amount of variance or none in some participation domains. Other variables should be considered to identify determinants of children's participation.

Screening and evaluation of antiparasitic and in vitro anticancer activities of Panamanian endophytic fungi.

PubMed

Martínez-Luis, Sergio; Cherigo, Lilia; Higginbotham, Sarah; Arnold, Elizabeth; Spadafora, Carmenza; Ibañez, Alicia; Gerwick, William H; Cubilla-Rios, Luis

2011-06-01

Many compounds produced by fungi have relevant pharmaceutical applications. The purpose of this study was to collect and isolate endophytic fungi from different regions of Panama and then to test their potential therapeutic activities against Leishmania donovani, Plasmodium falciparum, and Trypanosoma cruzi as well as their anticancer activities in MCF-7 cells. Of the 25 fungal isolates obtained, ten of them had good anti-parasitic potential, showing selective activity against L. donovani; four had significant anti-malarial activity; and three inhibited the growth of T. cruzi. Anticancer activity was demonstrated in four isolates. Of the active isolates, Edenia sp. strain F0755, Xylaria sp. strain F1220, Aspergillus sp. strain F1544, Mycoleptodiscus sp. strain F0194, Phomopsis sp. strain F1566, Pycnoporus sp. strain F0305, and Diaporthe sp. strain F1647 showed the most promise based on their selective bioactivity and lack of toxicity in the assays.

Measurements of the streaming potential of clay soils from tropical and subtropical regions using self-made apparatus.

PubMed

Li, Zhong-Yi; Li, Jiu-Yu; Liu, Yuan; Xu, Ren-Kou

2014-09-01

The streaming potential has been wildly used in charged parallel plates, capillaries, and porous media. However, there have been few studies involving the ζ potential of clay soils based on streaming potential measurements. A laboratory apparatus was developed in this study to measure the streaming potential (ΔE) of bulk clay soils' coupling coefficient (C) and cell resistance (R) of saturated granular soil samples. Excellent linearity of ΔE versus liquid pressure (ΔP) ensured the validity of measurements. The obtained parameters of C and R can be used to calculate the ζ potential of bulk soils. The results indicated that the ζ potentials measured by streaming potential method were significantly correlated with the ζ potentials of soil colloids determined by electrophoresis (r (2) = 0.960**). Therefore, the streaming potential method can be used to study the ζ potentials of bulk clay soils. The absolute values of the ζ potentials of four soils followed the order: Ultisol from Jiangxi > Ultisol from Anhui > Oxisol from Guangdong > Oxisol from Hainan, and this was consistent with the cation exchange capacities of these soils. The type and concentration of electrolytes affected soil ζ potentials. The ζ potential became less negative with increased electrolyte concentration. The ζ potentials were more negative in monovalent than in divalent cationic electrolyte solutions because more divalent cations were distributed in the shear plane of the diffuse layer as counter-cations on the soil surfaces than monovalent cations at the same electrolyte concentration.

Lead biotransformation potential of allochthonous Bacillus sp. SKK11 with sesame oil cake in mine soil

USDA-ARS?s Scientific Manuscript database

This study was aimed at assessing the potential of allochthonous Bacillus sp. SKK11 and sesame oil cake extract for transformation of Pb in mine soil. The bacteria were isolated from a brackish environment and identified as Bacillus sp. based on partial 16S rDNA sequences. The isolate SKK11 exhibite...

Intestinal protozoan parasites with zoonotic potential in birds.

PubMed

Marietto-Gonçalves, G A; Fernandes, T M; Silva, R J; Lopes, R S; Andreatti Filho, R L

2008-10-01

The aim of this study was to evaluate the occurrence of potentially zoonotic intestinal protozoan infections in exotic and wildlife Brazilian birds. Fecal samples from 207 birds of 45 species were examined. Infections by Balantidium sp., Entamoeba sp., and Blastocystis sp. were observed in 17 individuals (8.2%) of Gnorimopsar chopi, Oryzoborus angolensis, Sporophila caerulescens, Ramphastos toco, Aratinga leucophtalmus, and Pavo cristatus.

Potential of wheat bran to promote indigenous microbial enhanced oil recovery.

PubMed

Zhan, Yali; Wang, Qinghong; Chen, Chunmao; Kim, Jung Bong; Zhang, Hongdan; Yoza, Brandon A; Li, Qing X

2017-06-01

Microbial enhanced oil recovery (MEOR) is an emerging oil extraction technology that utilizes microorganisms to facilitate recovery of crude oil in depleted petroleum reservoirs. In the present study, effects of wheat bran utilization were investigated on stimulation of indigenous MEOR. Biostimulation conditions were optimized with the response surface methodology. The co-application of wheat bran with KNO 3 and NH 4 H 2 PO 4 significantly promoted indigenous MEOR (IMEOR) and exhibited sequential aerobic (O-), facultative (A n -) and anaerobic (A 0 -) metabolic stages. The surface tension of fermented broth decreased by approximately 35%, and the crude oil was highly emulsified. Microbial community structure varied largely among and in different IMEOR metabolic stages. Pseudomonas sp., Citrobacter sp., and uncultured Burkholderia sp. dominated the O-, A n - and early A 0 -stages. Bacillus sp., Achromobacter sp., Rhizobiales sp., Alcaligenes sp. and Clostridium sp. dominated the later A 0 -stage. This study illustrated occurrences of microbial community succession driven by wheat bran stimulation and its industrial potential.

Stimulation of angiogenesis, neurogenesis and regeneration by side population cells from dental pulp.

PubMed

Ishizaka, Ryo; Hayashi, Yuki; Iohara, Koichiro; Sugiyama, Masahiko; Murakami, Masashi; Yamamoto, Tsubasa; Fukuta, Osamu; Nakashima, Misako

2013-03-01

Mesenchymal stem cells (MSCs) have been used for cell therapy in various experimental disease models. However, the regenerative potential of MSCs from different tissue sources and the influence of the tissue niche have not been investigated. In this study, we compared the regenerative potential of dental pulp, bone marrow and adipose tissue-derived CD31(-) side population (SP) cells isolated from an individual porcine source. Pulp CD31(-) SP cells expressed the highest levels of angiogenic/neurotrophic factors and had the highest migration activity. Conditioned medium from pulp CD31(-) SP cells produced potent anti-apoptotic activity and neurite outgrowth, compared to those from bone marrow and adipose CD31(-) SP cells. Transplantation of pulp CD31(-) SP cells in a mouse hindlimb ischemia model produced higher blood flow and capillary density than transplantation of bone marrow and adipose CD31(-) SP cells. Motor function recovery and infarct size reduction were greater with pulp CD31(-) SP cells. Pulp CD31(-) SP cells induced maximal angiogenesis, neurogenesis and pulp regeneration in ectopic transplantation models compared to other tissue sources. These results demonstrate that pulp stem cells have higher angiogenic, neurogenic and regenerative potential and may therefore be superior to bone marrow and adipose stem cells for cell therapy. Copyright © 2012 Elsevier Ltd. All rights reserved.

Effectiveness of forestry BMPS for stream crossing sediment reduction using rainfall simulation

Treesearch

Brian C. Morris; M. Chad Bolding; W. Michael Aust

2015-01-01

Recent decisions by the United States Supreme Court and United States Environmental Protection Agency (EPA) have re-emphasized the importance of forestry best management practices (BMPs) at stream crossings. Stream crossings are potential major sources of sediment due to their direct connectivity between the potential erosion source and the stream, which eliminates...

Functional heterogeneity of side population cells in skeletal muscle

DOE Office of Scientific and Technical Information (OSTI.GOV)

Uezumi, Akiyoshi; Ojima, Koichi; Fukada, So-ichiro

2006-03-17

Skeletal muscle regeneration has been exclusively attributed to myogenic precursors, satellite cells. A stem cell-rich fraction referred to as side population (SP) cells also resides in skeletal muscle, but its roles in muscle regeneration remain unclear. We found that muscle SP cells could be subdivided into three sub-fractions using CD31 and CD45 markers. The majority of SP cells in normal non-regenerating muscle expressed CD31 and had endothelial characteristics. However, CD31{sup -}CD45{sup -} SP cells, which are a minor subpopulation in normal muscle, actively proliferated upon muscle injury and expressed not only several regulatory genes for muscle regeneration but also somemore » mesenchymal lineage markers. CD31{sup -}CD45{sup -} SP cells showed the greatest myogenic potential among three SP sub-fractions, but indeed revealed mesenchymal potentials in vitro. These SP cells preferentially differentiated into myofibers after intramuscular transplantation in vivo. Our results revealed the heterogeneity of muscle SP cells and suggest that CD31{sup -}CD45{sup -} SP cells participate in muscle regeneration.« less

Response of biotic communities to salinity changes in a Mediterranean hypersaline stream

PubMed Central

Velasco, Josefa; Millán, Andrés; Hernández, Juan; Gutiérrez, Cayetano; Abellán, Pedro; Sánchez, David; Ruiz, Mar

2006-01-01

Background This study investigates the relationship between salinity and biotic communities (primary producers and macroinvertebrates) in Rambla Salada, a Mediterranean hypersaline stream in SE Spain. Since the 1980's, the mean salinity of the stream has fallen from about 100 g L-1 to 35.5 g L-1, due to intensive irrigated agriculture in the watershed. Furthermore, large dilutions occur occasionally when the water irrigation channel suffers cracks. Results Along the salinity gradient studied (3.5 – 76.4 g L-1) Cladophora glomerata and Ruppia maritima biomass decreased with increasing salinity, while the biomass of epipelic algae increased. Diptera and Coleoptera species dominated the community both in disturbed as in re-established conditions. Most macroinvertebrates species found in Rambla Salada stream are euryhaline species with a broad range of salinity tolerance. Eight of them were recorded in natural hypersaline conditions (~100 g L-1) prior to important change in land use of the watershed: Ephydra flavipes, Stratyomis longicornis, Nebrioporus ceresyi, N. baeticus, Berosus hispanicus, Enochrus falcarius, Ochthebius cuprescens and Sigara selecta. However, other species recorded in the past, such as Ochthebius glaber, O. notabilis and Enochrus politus, were restricted to a hypersaline source or absent from Rambla Salada. The dilution of salinity to 3.5 – 6.8 gL-1 allowed the colonization of species with low salininty tolerance, such as Melanopsis praemorsa, Anax sp., Simulidae, Ceratopogonidae and Tanypodinae. The abundance of Ephydra flavipes and Ochthebius corrugatus showed a positive significant response to salinity, while Anax sp., Simulidae, S. selecta, N. ceresyi, N. baeticus, and B. hispanicus showed significant negative correlations. The number of total macroinvertebrate taxa, Diptera and Coleoptera species, number of families, Margalef's index and Shannon's diversity index decreased with increasing salinity. However, the rest of community parameters, such as the abundance of individuals, evenness and Simpson's index, showed no significant response to changes in salinity. Classification and ordination analysis revealed major differences in macroinvertebrate community structure between hypersaline conditions (76.4 g L-1) and the rest of the communities observed at the lower salinity levels, and revealed that below ~75 g L-1, dissimilarities in the communities were greater between the two habitats studied (runs and pools) than between salinity levels. Conclusion Salinity was the first factor determining community composition and structure in Rambla Salada stream followed by the type of habitat. PMID:17014701

Evolution of sp{sup 2} networks with substrate temperature in amorphous carbon films: Experiment and theory

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gago, R.; Centro de Micro-Analisis de Materiales, Universidad Autonoma de Madrid, Campus de Cantoblanco, 28049 Madrid; Vinnichenko, M.

2005-07-01

The evolution of sp{sup 2} hybrids in amorphous carbon (a-C) films deposited at different substrate temperatures was studied experimentally and theoretically. The bonding structure of a-C films prepared by filtered cathodic vacuum arc was assessed by the combination of visible Raman spectroscopy, x-ray absorption, and spectroscopic ellipsometry, while a-C structures were generated by molecular-dynamics deposition simulations with the Brenner interatomic potential to determine theoretical sp{sup 2} site distributions. The experimental results show a transition from tetrahedral a-C (ta-C) to sp{sup 2}-rich structures at {approx}500 K. The sp{sup 2} hybrids are mainly arranged in chains or pairs whereas graphitic structures aremore » only promoted for sp{sup 2} fractions above 80%. The theoretical analysis confirms the preferred pairing of isolated sp{sup 2} sites in ta-C, the coalescence of sp{sup 2} clusters for medium sp{sup 2} fractions, and the pronounced formation of rings for sp{sup 2} fractions >80%. However, the dominance of sixfold rings is not reproduced theoretically, probably related to the functional form of the interatomic potential used.« less

Viral infection potentiates the increase in airway blood flow produced by substance P.

PubMed

Yamawaki, I; Geppetti, P; Bertrand, C; Chan, B; Massion, P; Piedimonte, G; Nadel, J A

1995-08-01

We examined the effect of respiratory tract infection with Sendai virus on the responsiveness of airway blood flow to substance P (SP) in rats. Pathogen-free rats were inoculated with either Sendai virus suspension or sterile viral growth medium into each nostril. Five days later, we measured airway and esophageal blood flows before and immediately after injection of SP or histamine into the left ventricle of rats in both groups using a modification of the reference-sample microsphere technique. Viral infection potentiated the increase in airway blood flow evoked by SP but not by histamine. We also examined the effect of neutral endopeptidase (NEP) and angiotensin-converting enzyme (ACE) on the SP-induced increase in airway blood flow. Both phosphoramidon (NEP inhibitor) and captopril (ACE inhibitor) potentiated the increase in airway blood flow produced by SP in pathogen-free rats. In the presence of both peptidase inhibitors, a submaximal dose of SP increased blood flow to a similar level in infected and pathogen-free rats. Thus decreased activity of both ACE and NEP may be involved in the exaggerated increase in airway blood flow evoked by SP in virus-infected rats.

Laser Induced Breakdown Spectroscopy Based on Single Beam Splitting and Geometric Configuration for Effective Signal Enhancement

PubMed Central

Yang, Guang; Lin, Qingyu; Ding, Yu; Tian, Di; Duan, Yixiang

2015-01-01

A new laser induced breakdown spectroscopy (LIBS) based on single-beam-splitting (SBS) and proper optical geometric configuration has been initially explored in this work for effective signal enhancement. In order to improve the interaction efficiency of laser energy with the ablated material, a laser beam operated in pulse mode was divided into two streams to ablate/excite the target sample in different directions instead of the conventional one beam excitation in single pulse LIBS (SP-LIBS). In spatial configuration, the laser beam geometry plays an important role in the emission signal enhancement. Thus, an adjustable geometric configuration with variable incident angle between the two splitted laser beams was constructed for achieving maximum signal enhancement. With the optimized angles of 60° and 70° for Al and Cu atomic emission lines at 396.15 nm and 324.75 nm respectively, about 5.6- and 4.8-folds signal enhancements were achieved for aluminum alloy and copper alloy samples compared to SP-LIBS. Furthermore, the temporal analysis, in which the intensity of atomic lines in SP-LIBS decayed at least ten times faster than the SBS-LIBS, proved that the energy coupling efficiency of SBS-LIBS was significantly higher than that of SP-LIBS. PMID:25557721

Spatial and Temporal Distribution of Non-Biting Midge Larvae Assemblages in Streams in a Mountainous Region in Southern Brazil

PubMed Central

Floss, Elzira Cecília Serafini; Secretti, Elisangela; Kotzian, Carla Bender; Spies, Marcia Regina; Pires, Mateus Marques

2013-01-01

The spatial and temporal structure of non-biting midge (Diptera: Chironomidae) larvae assemblages and some environmental factors that affect their distribution were analyzed in a montane river and its tributaries in a temperate climate region of southernmost Brazil. In total, 69 taxa were recorded after four seasonal samplings (winter, spring, summer, and autumn). The dominant taxa were Rheotanytarsus sp. 1, Rheotanytarsus sp. 2, Cricotopus sp. 2, and Polypedilum (Polypedilum) sp., although dominance varied among the four sampling sites. The variations in dominance, abundance, and richness among the different sites were affected by environmental characteristics, such as the presence of marginal vegetation and a heterogeneous substratum, and also by human activities. Strictly environmental factors, such as altitude, and factors related to annual weather patterns, such as mean temperature and precipitation, influenced the spatial and temporal distribution of certain taxa and the structure of faunal assemblages. The influence of the riparian vegetation and riverbed heterogeneity on the composition, richness, and abundance of the chironomid larvae assemblages indicates that human activities, such as deforestation and the construction of dams, constitute a serious threat to the conservation of these insects and to the fauna that depends on them for food. PMID:24784953

Effects of seminal plasma and flash-freezing on DNA structure of stallion epididymal sperm exposed to different potentiators of DNA damage.

PubMed

Serafini, R; Varner, D D; Blanchard, T L; Teague, S R; LaCaze, K; Love, C C

2018-05-24

The tolerance of sperm DNA structure to seminal plasma and freezing conditions has both clinical and basic biologic relevance. In this study, fresh (FS) or flash-frozen (FZ) stallion epididymal sperm were exposed (SP + ) or unexposed (SP - ) to seminal plasma. Sperm were then evaluated to monitor the degree of change in DNA structure following challenge with chemical (dithiothreitol-DTT), oxidative (iron sulfate; FeSO 4 ) or enzymatic (DNase I) potentiators of DNA damage. For sperm not treated with potentiators (controls), there was no effect of SP treatment (SP - vs. SP + ) or freezing treatment (FS vs. FZ; non-significant) on measures of any DNA assays (i.e., 8-hydroxy, 2'deoxyguanosine [8OHdG], TUNEL, or sperm chromatin structure [SCSA] assays). Group FZ was more susceptible than Group FS to potentiators of DNA damage. Percent 8OHdG-positive sperm was higher in Group FZ/SP - treated with FeSO 4 than all other groups (P < 0.05). Percent TUNEL-positive sperm was similar among FZ/SP - groups treated with DTT, FeSO 4 , or DNase (non-significant) and was higher in these groups than all other treatments (P < 0.05). Percent COMP-α t was higher following treatment with DNase or DTT, as compared to their respective controls, regardless of prior exposure to SP (P < 0.05). Overall, sperm DNA structure was unaffected by seminal plasma or freezing treatment when samples were not exposed to potentiators of sperm DNA damage; however, marked differences were identified in DNA structure when sperm were challenged with chemical, oxidative or enzymatic treatments. These results highlight the importance of challenging DNA structure prior to analysis. The use of potentiators of DNA damage provided a model to evaluate sperm DNA structure following exposure of sperm to various experimental treatments. Copyright © 2018 Elsevier Inc. All rights reserved.

Potential of pin-by-pin SPN calculations as an industrial reference

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fliscounakis, M.; Girardi, E.; Courau, T.

2012-07-01

This paper aims at analysing the potential of pin-by-pin SP{sub n} calculations to compute the neutronic flux in PWR cores as an alternative to the diffusion approximation. As far as pin-by-pin calculations are concerned, a SPH equivalence is used to preserve the reactions rates. The use of SPH equivalence is a common practice in core diffusion calculations. In this paper, a methodology to generalize the equivalence procedure in the SP{sub n} equations context is presented. In order to verify and validate the equivalence procedure, SP{sub n} calculations are compared to 2D transport reference results obtained with the APOLL02 code. Themore » validation cases consist in 3x3 analytical assembly color sets involving burn-up heterogeneities, UOX/MOX interfaces, and control rods. Considering various energy discretizations (up to 26 groups) and flux development orders (up to 7) for the SP{sub n} equations, results show that 26-group SP{sub 3} calculations are very close to the transport reference (with pin production rates discrepancies < 1%). This proves the high interest of pin-by-pin SP{sub n} calculations as an industrial reference when relying on 26 energy groups combined with SP{sub 3} flux development order. Additionally, the SP{sub n} results are compared to diffusion pin-by-pin calculations, in order to evaluate the potential benefit of using a SP{sub n} solver as an alternative to diffusion. Discrepancies on pin-production rates are less than 1.6% for 6-group SP{sub 3} calculations against 3.2% for 2-group diffusion calculations. This shows that SP{sub n} solvers may be considered as an alternative to multigroup diffusion. (authors)« less

Surfactant protein A is expressed in the central nervous system of rats with experimental autoimmune encephalomyelitis, and suppresses inflammation in human astrocytes and microglia

PubMed Central

Yang, Xue; Yan, Jun; Feng, Juan

2017-01-01

The collectin surfactant protein-A (SP-A), a potent host defense molecule, is well recognized for its role in the maintenance of pulmonary homeostasis and the modulation of inflammatory responses. While previous studies have detected SP-A in numerous extrapulmonary tissues, there is still a lack of information regarding its expression in central nervous system (CNS) and potential effects in neuroinflammatory diseases, such as multiple sclerosis (MS). The present study used experimental autoimmune encephalomyelitis (EAE), the most commonly used animal model of MS, to investigate the expression of SP-A in the CNS at different stages of disease progression. In addition, in vitro experiments with lipopolysaccharide (LPS)-stimulated human astrocytes and microglia were performed to investigate the potential role of SP-A in the modulation of CNS inflammatory responses. The results of the present study demonstrated widespread distribution of SP-A in the rat CNS, and also identified specific expression patterns of SP-A at different stages of EAE. In vitro, the current study revealed that treatment of human astrocytes and microglia with LPS promoted SP-A expression in a dose-dependent manner. Furthermore, exogenous SP-A protein significantly decreased Toll-like receptor 4 and nuclear factor-κB expression, and reduced interleukin-1β and tumor necrosis factor-α levels. The results of the current study indicate a potential role for SP-A in the modulation of CNS inflammatory responses. PMID:28393255

Integrative taxonomy of Metrichia Ross (Trichoptera: Hydroptilidae: Ochrotrichiinae) microcaddisflies from Brazil: descriptions of twenty new species

PubMed Central

Takiya, Daniela M.; Nessimian, Jorge L.

2016-01-01

Metrichia is assigned to the Ochrotrichiinae, a group of almost exclusively Neotropical microcaddisflies. Metrichia comprises over 100 described species and, despite its diversity, only one species has been described from Brazil so far. In this paper, we provide descriptions for 20 new species from 8 Brazilian states: M. acuminata sp. nov., M. azul sp. nov., M. bonita sp. nov., M. bracui sp. nov., M. caraca sp. nov., M. circuliforme sp. nov., M. curta sp. nov., M. farofa sp. nov., M. forceps sp. nov., M. formosinha sp. nov., M. goiana sp. nov., M. itabaiana sp. nov., M. longissima sp. nov., M. peluda sp. nov., M. rafaeli sp. nov., M. simples sp. nov., M. talhada sp. nov., M. tere sp. nov., M. ubajara sp. nov., and M. vulgaris sp. nov. DNA barcode sequences (577 bp of the mitochondrial gene COI) were generated for 13 of the new species and two previously known species of Metrichia resulting in 64 sequences. In addition, COI sequences were obtained for other genera of Ochrotrichiinae (Angrisanoia, Nothotrichia, Ochrotrichia, Ragatrichia, and Rhyacopsyche). DNA sequences and morphological data were integrated to evaluate species delimitations. K2P pairwise distances were calculated to generate a neighbor-joining tree. COI sequences also were submitted to ABGD and GMYC methods to assess ‘potential species’ delimitation. Analyses showed a conspicuous barcoding gap among Metrichia sequences (highest intraspecific divergence: 4.8%; lowest interspecific divergence: 12.6%). Molecular analyses also allowed the association of larvae and adults of Metrichia bonita sp. nov. from Mato Grosso do Sul, representing the first record of microcaddisfly larvae occurring in calcareous tufa (or travertine). ABGD results agreed with the morphological delimitation of Metrichia species, while GMYC estimated a slightly higher number of species, suggesting the division of two morphological species, each one into two potential species. Because this could be due to unbalanced sampling and the lack of morphological diagnostic characters, we have maintained these two species as undivided. PMID:27169001

Analysis of Self-Potential Response beyond the Fixed Geometry Technique

NASA Astrophysics Data System (ADS)

Mahardika, Harry

2018-03-01

The self-potential (SP) method is one of the oldest geophysical methods that are still available for today’s application. Since its early days SP data interpretation has been done qualitatively until the emerging of the fixed geometry analysis that was used to characterize the orientation and the electric-dipole properties of a mineral ore structure. Through the expansion of fundamental theories, computational methods, field-and-lab experiments in the last fifteen years, SP method has emerge from its low-class reputation to become more respectable. It became a complementary package alongside electric-resistivity tomography (ERT) for detecting groundwater flow in the subsurface, and extends to the hydrothermal flow in geothermal areas. As the analysis of SP data becomes more quantitative, its potential applications become more diverse. In this paper, we will show examples of our current SP studies such as the groundwater flow characterization inside a fault area. Lastly we will introduce the application of the "active" SP method - that is the seismoelectric method - which can be used for 4D real-time monitoring systems.

Inhibitory effects of spirulina platensis on carcinogen-activating cytochrome P450 isozymes and potential for drug interactions.

PubMed

Savranoglu, Seda; Tumer, Tugba Boyunegmez

2013-01-01

Spirulina platensis (SP) has been considered as potential food source of 21st century due to its remarkable nutrient profile and therapeutic benefits. However, the cytochrome P450 (CYP)-mediated drug/chemical interaction potential of SP has not yet been pursued. We investigated the effects of SP on the expressions and enzymatic activities of main CYP isozymes. After the rats were orally administered with SP daily for 5 consecutive weeks, there were significant downregulations in hepatic expression levels and inhibition in enzymatic activities of CYP1A2 and CYP2E1 compared to controls. In addition, a significant decrease was observed in CYP2C6-associated enzyme activity with no remarkable changes in messenger RNA (mRNA)/protein levels. The SP application resulted in significant increases in mRNA/protein levels of both CYP2B1 and CYP3A1 without a significant change in enzyme activities. These findings partly explain the chemopreventive properties of SP toward various organ toxicities, mutagenesis, and carcinogenesis; however, its coadministration with some CYP substrates may lead to undesirable drug interactions.

Calcitonin gene-related peptide enhances substance P-induced behaviors via metabolic inhibition: in vivo evidence for a new mechanism of neuromodulation.

PubMed

Mao, J; Coghill, R C; Kellstein, D E; Frenk, H; Mayer, D J

1992-03-06

The present study examined the effects of intrathecal (i.t.) injection of calcitonin gene-related peptide (CGRP) on caudally directed biting and scratching induced by i.t. substance P (SP), bombesin (BBS), strychnine (STR), and kainic acid (KA). CGRP alone (5.25, 10.5 and 21 nmol) had no effect on these behaviors, but CGRP pretreatment produced a dose-related enhancement of behaviors induced by SP or BBS, but not by KA or STR. 2-Amino-5-phosphonovaleric acid (APV, 25 nmol), a selective N-methyl-D-aspartate (NMDA) receptor antagonist, did not block the CGRP potentiation of SP and BBS induced behaviors. CGRP, however, failed to enhance scratching and biting induced by a SP analogue [pGlu5-Mephe8-MeGly9]SP(5-11) (Dime-C7) that is resistant to enzymatic degradation by SP endopeptidase. These findings demonstrate that CGRP potentiates SP induced behavioral responses via inhibition of neuropeptide degradation and that this mechanism may serve as a physiological mechanism of SP modulation.

POTENTIAL USE OF ALGAE AS INDICATORS OF HYDROLOGIC PERMANENCE IN HEADWATER STREAMS: INITIAL DATA EXPLORATION

EPA Science Inventory

Periphyton from headwater intermittent streams was sampled in order to evaluate the potential use of algal assemblages as indicators of flow permanence. Streams from four forests near Cincinnati, Ohio were classified according to hydrologic permanence as ephemeral, intermittent ...

Potential for energy recovery from humid air streams.

Treesearch

Howard H. Rosen

1979-01-01

The potential for energy recovery from the vent stream of dryers is examined by assuming the vent stream transfers its energy in a regenerative heat exchanger. Tables present energy recovery over a range of conditions. Example problems demonstrate the use of the energy recovery tables.

Attenuated plasma extravasation to sensory neuropeptides in diabetic rats.

PubMed

Mathison, R; Davison, J S

1993-01-01

The effects of either substance P (SP) or a metabolically stable SP analogue, [pGlu5,Me-Phe8,Sar9]SP(5-11), alone or in combination with calcitonin gene-related peptide (CGRP) on blood pressure (BP) and extravasation of serum albumin were examined in normal and diabetic rats. CGRP (12 ng/kg) modified neither BP nor vascular permeability in control and diabetic rats. Both SP and its analogue (74 ng/kg) produced hypotension, and increased plasma extravasation in the respiratory tissues, urinary bladder and skin. The simultaneous injection of CGRP and SP resulted in modest potentiation of the vascular permeability actions of SP in control and diabetic rats. However, extravasation induced by [pGlu5,Me-Phe8,Sar9]SP(5-11) was potentiated by CGRP in control animals, but not in diabetic rats. Defective neurogenic inflammatory responses in diabetic rats may result from decreased responses in the effector tissues of diabetic rats to the neuropeptides released from sensory nerves.

Garcinol downregulates Notch1 signaling via modulating miR-200c and suppresses oncogenic properties of PANC-1 cancer stem-like cells.

PubMed

Huang, Chi-Cheng; Lin, Chien-Min; Huang, Yan-Jiun; Wei, Li; Ting, Lei-Li; Kuo, Chia-Chun; Hsu, Cheyu; Chiou, Jeng-Fong; Wu, Alexander T H; Lee, Wei-Hwa

2017-03-01

Pancreatic cancer represents one of the most aggressive types of malignancy due to its high resistance toward most clinically available treatments. The presence of pancreatic cancer stem-like cells (CSCs) has been attributed to the intrinsically high resistance and highly metastatic potential of this disease. Here, we identified and isolated pancreatic CSCs using the side population (SP) method from human pancreatic cancer cell line, PANC-1. We then compared the SP and non-SP PANC-1 cells genetically. PANC-1 SP cells exhibited CSC properties including enhanced self-renewal ability, increased metastatic potential, and resistance toward gemcitabine treatment. These cancer stem-like phenotypes were supported by their enhanced expression of ABCG2, Oct4, and CD44. A traditional plant-derived antioxidant, garcinol, has been implicated for its anticancer properties. Here, we found that garcinol treatment to PANC-1 SP cells significantly suppressed the stem-like properties of PANC-1 SP cells and metastatic potential by downregulating the expression of Mcl-1, EZH2, ABCG2, Gli-1, and Notch1. More importantly, garcinol treatment led to the upregulation of several tumor suppressor microRNAs, and miR-200c increased by garcinol treatment was found to target and downregulate Notch1. Thus, PANC-1 SP cells may serve as a model for studying drug-resistant pancreatic CSCs, and garcinol has the potential as an antagonist against pancreatic CSCs. © 2015 International Union of Biochemistry and Molecular Biology, Inc.

Streaming potentials in gramicidin channels measured with ion-selective microelectrodes.

PubMed Central

Tripathi, S; Hladky, S B

1998-01-01

Streaming potentials have been measured for gramicidin channels with a new method employing ion-selective microelectrodes. It is shown that ideally ion-selective electrodes placed at the membrane surface record the true streaming potential. Using this method for ion concentrations below 100 mM, approximately seven water molecules are transported whenever a sodium, potassium, or cesium ion, passes through the channel. This new method confirms earlier measurements (Rosenberg, P.A., and A. Finkelstein. 1978. Interaction of ions and water in gramicidin A channels. J. Gen. Physiol. 72:327-340) in which the streaming potentials were calculated as the difference between electrical potentials measured in the presence of gramicidin and in the presence of the ion carriers valinomycin and nonactin. PMID:9635745

Fish, Benthic-Macroinvertebrate, and Stream-Habitat Data From Two Estuaries Near Galveston Bay, Texas, 2000-2001

DTIC Science & Technology

2002-01-01

0 0 0 1 0 2 0 0 0 2 5 Amphipoda Hyalellidae Hyalella azteca ( Saussure ) 0 0 16 0 0 0 0 0 0 0 16 Capitellida Capitellidae Mediomastus ambiseta (Hartman...0 0 0 0 0 0 0 0 14 0 14 Amphipoda Gammaridae Gammarus sp. 0 0 0 0 0 0 0 0 28 0 28 Amphipoda Hyalellidae Hyalella azteca ( Saussure ) 47 0 18 0 0 0 0 0

Endo-parasite fauna of rodents caught in five wet markets in Kuala Lumpur and its potential zoonotic implications.

PubMed

Paramasvaran, S; Sani, R A; Hassan, L; Hanjeet, K; Krishnasamy, M; John, J; Santhana, R; Sumarni, M G; Lim, K H

2009-04-01

Rodents were collected from five wet markets (Chow Kit, Dato Keramat, Setapak, Jinjang and Kepong) in Kuala Lumpur, Federal Territory between March to April 2006. Ninety seven rats were trapped using wire traps measuring 29 x 22 x 50 cm baited with fruits, coconuts, dried fish or sweet potatoes. A total of 17 different species of parasites were identified from three species of rats out of which 11 (65%) were identified to be zoonotic. The helminths identified from the urban rats were nematodes- Capillaria hepatica, Gongylonema neoplasticum, Heterakis spumosa, Heterakis sp., Masterphorus muris, Nippostrongylus brasiliensis, Physolaptera sp., Pterogodermatis sp., Rictularia tani and Syphacia muris; cestodes- Hymenolepis nana, Hymenolepis diminuta, Hymenolepis sabnema, Hymenolepis sp., Raillietina sp. and Taenia taeniaeformis, and acanthocephalan- Moniliformis moniliformis. The following parasites are of potential medical importance: C. hepatica, G. neoplasticum, R. tani, S. muris, H. diminuta, H. nana, Raillietina sp. and T. taeniaeformis.

Mutants with Enhanced Nitrogenase Activity in Hydroponic Azospirillum brasilense-Wheat Associations

PubMed Central

Pereg Gerk, Lily; Gilchrist, Kate; Kennedy, Ivan R.

2000-01-01

The effect of a mutation affecting flocculation, differentiation into cyst-like forms, and root colonization on nitrogenase expression by Azospirillum brasilense is described. The gene flcA of strain Sp7 restored these phenotypes in spontaneous mutants of both strains Sp7 and Sp245. Employing both constitutive pLA-lacZ and nifH-lacZ reporter fusions expressed in situ, the colony morphology, colonization pattern, and potential for nitrogenase activity of spontaneous mutants and flcA Tn5-induced mutants were established. The results of this study show that the ability of Sp7 and Sp245 mutant strains to remain in a vegetative form improved their ability to express nitrogenase activity in association with wheat in a hydroponic system. Restoring the cyst formation and colonization pattern to the spontaneous mutant Sp7-S reduced nitrogenase activity rates in association with plants to that of the wild-type Sp7. Although Tn5-induced flcA mutants showed higher potentials for nitrogenase expression than Sp7, their potentials were lower than that of Sp7-S, indicating that other factors in this strain contribute to its exceptional nitrogenase activity rates on plants. The lack of lateral flagella is not one of these factors, as Sp7-PM23, a spontaneous mutant impaired in swarming and lateral-flagellum production but not in flocculation, showed wild-type nitrogenase activity and expression. The results also suggest factors of importance in evolving an effective symbiosis between Azospirillum and wheat, such as increasing the availability of microaerobic niches along the root, increased supply of carbon sources by the plant, and the retention of the bacterial cells in vegetative form for faster metabolism. PMID:10788397

Applications of a New England stream temperature model to ...

EPA Pesticide Factsheets

We have applied a statistical stream network (SSN) model to predict stream thermal metrics (summer monthly medians, growing season maximum magnitude and timing, and daily rates of change) across New England nontidal streams and rivers, excluding northern Maine watersheds that extend into Canada (Detenbeck et al., in review). We excluded stream temperature observations within one kilometer downstream of dams from our model development, so our predictions for those reaches represent potential thermal regimes in the absence of dam effects. We used stream thermal thresholds for mean July temperatures delineating transitions between coldwater, transitional coolwater, and warmwater fish communities derived by Beauchene et al. (2014) to classify expected stream and river thermal regimes across New England. Within the model domain and based on 2006 land-use and air temperatures, the model predicts that 21.8% of stream + river kilometers would support coldwater fish communities (mean July water temperatures 22.3 degrees C mean July temperatures). Application of the model allows us to assess potential condition given full riparian zone restoration as well as potential loss of cold or coolwater habitat given loss of riparian shading. Given restoration of all ripa

The N-methyl-D-aspartate-evoked cytoplasmic calcium increase in adult rat dorsal root ganglion neuronal somata was potentiated by substance P pretreatment in a protein kinase C-dependent manner.

PubMed

Castillo, C; Norcini, M; Baquero-Buitrago, J; Levacic, D; Medina, R; Montoya-Gacharna, J V; Blanck, T J J; Dubois, M; Recio-Pinto, E

2011-03-17

The involvement of substance P (SP) in neuronal sensitization through the activation of the neurokinin-1-receptor (NK1r) in postsynaptic dorsal horn neurons has been well established. In contrast, the role of SP and NK1r in primary sensory dorsal root ganglion (DRG) neurons, in particular in the soma, is not well understood. In this study, we evaluated whether SP modulated the NMDA-evoked transient increase in cytoplasmic Ca2+ ([Ca2+]cyt) in the soma of dissociated adult DRG neurons. Cultures were treated with nerve growth factor (NGF), prostaglandin E2 (PGE2) or both NGF+PGE2. Treatment with NGF+PGE2 increased the percentage of N-methyl-D-aspartate (NMDA) responsive neurons. There was no correlation between the percentage of NMDA responsive neurons and the level of expression of the NR1 and NR2B subunits of the NMDA receptor or of the NK1r. Pretreatment with SP did not alter the percentage of NMDA responsive neurons; while it potentiated the NMDA-evoked [Ca2+]cyt transient by increasing its magnitude and by prolonging the period during which small- and some medium-sized neurons remained NMDA responsive. The SP-mediated potentiation was blocked by the SP-antagonist ([D-Pro4, D-Trp7,9]-SP (4-11)) and by the protein kinase C (PKC) blocker bisindolylmaleimide I (BIM); and correlated with the phosphorylation of PKCε. The Nk1r agonist [Sar9, Met(O2)11]-SP (SarMet-SP) also potentiated the NMDA-evoked [Ca2+]cyt transient. Exposure to SP or SarMet-SP produced a rapid increase in the labeling of phosphorylated-PKCε. In none of the conditions we detected phosphorylation of the NR2B subunit at Ser-1303. Phosphorylation of the NR2B subunit at Tyr1472 was enhanced to a similar extent in cells exposed to NMDA, SP or NMDA+SP, and that enhancement was blocked by BIM. Our findings suggest that NGF and PGE2 may contribute to the injury-evoked sensitization of DRG neurons in part by enhancing their NMDA-evoked [Ca2+]cyt transient in all sized DRG neurons; and that SP may further contribute to the DRG sensitization by enhancing and prolonging the NMDA-evoked increase in [Ca2+]cyt in small- and medium-sized DRG neurons. Copyright © 2011 IBRO. Published by Elsevier Ltd. All rights reserved.

Quantifying the sensitivity of ephemeral streams to land disturbance activities in arid ecosystems at the watershed scale.

PubMed

O'Connor, Ben L; Hamada, Yuki; Bowen, Esther E; Grippo, Mark A; Hartmann, Heidi M; Patton, Terri L; Van Lonkhuyzen, Robert A; Carr, Adrianne E

2014-11-01

Large areas of public lands administered by the Bureau of Land Management and located in arid regions of the southwestern United States are being considered for the development of utility-scale solar energy facilities. Land-disturbing activities in these desert, alluvium-filled valleys have the potential to adversely affect the hydrologic and ecologic functions of ephemeral streams. Regulation and management of ephemeral streams typically falls under a spectrum of federal, state, and local programs, but scientifically based guidelines for protecting ephemeral streams with respect to land-development activities are largely nonexistent. This study developed an assessment approach for quantifying the sensitivity to land disturbance of ephemeral stream reaches located in proposed solar energy zones (SEZs). The ephemeral stream assessment approach used publicly-available geospatial data on hydrology, topography, surficial geology, and soil characteristics, as well as high-resolution aerial imagery. These datasets were used to inform a professional judgment-based score index of potential land disturbance impacts on selected critical functions of ephemeral streams, including flow and sediment conveyance, ecological habitat value, and groundwater recharge. The total sensitivity scores (sum of scores for the critical stream functions of flow and sediment conveyance, ecological habitats, and groundwater recharge) were used to identify highly sensitive stream reaches to inform decisions on developable areas in SEZs. Total sensitivity scores typically reflected the scores of the individual stream functions; some exceptions pertain to groundwater recharge and ecological habitats. The primary limitations of this assessment approach were the lack of high-resolution identification of ephemeral stream channels in the existing National Hydrography Dataset, and the lack of mechanistic processes describing potential impacts on ephemeral stream functions at the watershed scale. The primary strength of this assessment approach is that it allows watershed-scale planning for low-impact development in arid ecosystems; the qualitative scoring of potential impacts can also be adjusted to accommodate new geospatial data, and to allow for expert and stakeholder input into decisions regarding the identification and potential avoidance of highly sensitive stream reaches.

Quantifying the sensitivity of ephemeral streams to land disturbance activities in arid ecosystems at the watershed scale

DOE Office of Scientific and Technical Information (OSTI.GOV)

O’Connor, Ben L.; Hamada, Yuki; Bowen, Esther E.

2014-08-17

Large areas of public lands administered by the Bureau of Land Management and located in arid regions of the southwestern United States are being considered for the development of utility-scale solar energy facilities. Land-disturbing activities in these desert, alluvium-filled valleys have the potential to adversely affect the hydrologic and ecologic functions of ephemeral streams. Regulation and management of ephemeral streams typically falls under a spectrum of federal, state, and local programs, but scientifically based guidelines for protecting ephemeral streams with respect to land-development activities are largely nonexistent. This study developed an assessment approach for quantifying the sensitivity to land disturbancemore » of ephemeral stream reaches located in proposed solar energy zones (SEZs). The ephemeral stream assessment approach used publicly-available geospatial data on hydrology, topography, surficial geology, and soil characteristics, as well as highresolution aerial imagery. These datasets were used to inform a professional judgment-based score index of potential land disturbance impacts on selected critical functions of ephemeral streams, including flow and sediment conveyance, ecological habitat value, and groundwater recharge. The total sensitivity scores (sum of scores for the critical stream functions of flow and sediment conveyance, ecological habitats, and groundwater recharge) were used to identify highly sensitive stream reaches to inform decisions on developable areas in SEZs. Total sensitivity scores typically reflected the scores of the individual stream functions; some exceptions pertain to groundwater recharge and ecological habitats. The primary limitations of this assessment approach were the lack of high-resolution identification of ephemeral stream channels in the existing National Hydrography Dataset, and the lack of mechanistic processes describing potential impacts on ephemeral stream functions at the watershed scale.The primary strength of this assessment approach is that it allows watershed-scale planning for low-impact development in arid ecosystems; the qualitative scoring of potential impacts can also be adjusted to accommodate new geospatial data, and to allow for expert and stakeholder input into decisions regarding the identification and potential avoidance of highly sensitive stream reaches.« less

Rainfall and Coconut Accession Explain the Composition and Abundance of the Community of Potential Auchenorrhyncha Phytoplasma Vectors in Brazil.

PubMed

Silva, Flaviana G; Passos, Eliana M; Diniz, Leandro E C; Farias, Adriano P; Teodoro, Adenir V; Fernandes, Marcelo F; Dollet, Michel

2018-04-05

Coconut plantations are attacked by the lethal yellowing (LY), which is spreading rapidly with extremely destructive effects in several countries. The disease is caused by phytoplasmas that occur in the plant phloem and are transmitted by Haplaxius crudus (Van Duzee) (Auchenorrhyncha: Cixiidae). Owing to their phloem-sap feeding habit, other planthopper species possibly act as vectors. Here, we aimed at assessing the seasonal variation in the Auchenorrhyncha community in six dwarf coconut accessions. Also, we assessed the relative contribution of biotic (coconut accession) and abiotic (rainfall, temperature) in explaining Auchenorrhyncha composition and abundance. The Auchenorrhyncha community was monthly evaluated for 1 yr using yellow sticky traps. Among the most abundant species, Oecleus sp., Balclutha sp., Deltocephalinae sp.2, Deltocephalinae sp.3, Cenchreini sp., Omolicna nigripennis Caldwell (Derbidae), and Cedusa sp. are potential phytoplasma vectors. The composition of the Auchenorrhyncha community differed between dwarf coconut accessions and periods, namely, in March and April (transition from dry to rainy season) and August (transition from rainy to dry season). In these months, Oecleus sp. was predominantly found in the accessions Cameroon Red Dwarf, Malayan Red Dwarf, and Brazilian Red Dwarf Gramame, while Cenchreini sp. and Bolbonota sp. were dominant in the accessions Brazilian Yellow Dwarf Gramame, Malayan Yellow Dwarf, and Brazilian Green Dwarf Jequi. We conclude that dwarf coconut host several Auchenorrhyncha species potential phytoplasma vectors. Furthermore, coconut accessions could be exploited in breeding programs aiming at prevention of LY. However, rainfall followed by accessions mostly explained the composition and abundance of the Auchenorrhyncha community.

Saccadic spike potentials in gamma-band EEG: characterization, detection and suppression.

PubMed

Keren, Alon S; Yuval-Greenberg, Shlomit; Deouell, Leon Y

2010-02-01

Analysis of high-frequency (gamma-band) neural activity by means of non-invasive EEG is gaining increasing interest. However, we have recently shown that a saccade-related spike potential (SP) seriously confounds the analysis of EEG induced gamma-band responses (iGBR), as the SP eludes traditional EEG artifact rejection methods. Here we provide a comprehensive profile of the SP and evaluate methods for its detection and suppression, aiming to unveil true cerebral gamma-band activity. The SP appears consistently as a sharp biphasic deflection of about 22 ms starting at the saccade onset, with a frequency band of approximately 20-90 Hz. On the average, larger saccades elicit higher SP amplitudes. The SP amplitude gradually changes from the extra-ocular channels towards posterior sites with the steepest gradients around the eyes, indicating its ocular source. Although the amplitude and the sign of the SP depend on the choice of reference channel, the potential gradients remain the same and non-zero for all references. The scalp topography is modulated almost exclusively by the direction of saccades, with steeper gradients ipsilateral to the saccade target. We discuss how the above characteristics impede attempts to remove these SPs from the EEG by common temporal filtering, choice of different references, or rejection of contaminated trials. We examine the extent to which SPs can be reliably detected without an eye tracker, assess the degree to which scalp current density derivation attenuates the effect of the SP, and propose a tailored ICA procedure for minimizing the effect of the SP. Copyright (c) 2009 Elsevier Inc. All rights reserved.

Alburnoides manyasensis (Actinopterygii, Cyprinidae), a new species of cyprinid fish from Manyas Lake basin, Turkey

PubMed Central

Turan, Davut; Ekmekçi, F. Güler; Kaya, Cüneyt; Güçlü, S. Serkan

2013-01-01

Abstract Alburnoides manyasensis, sp. n., is described from the Koca Stream (Lake Manyas drainage, Marmara Sea basin) in Anatolia. It is distinguished from all species of Alburnoides in Turkey and adjacent regions, Alburnoides tzanevi (Rezovska [Rezve], Istranca and Terkos streams in the western Black Sea drainage), Alburnoides cf. smyrnae (Banaz Stream, a drainage of Büyük Menderes River, Aegean Sea basin), Alburnoides fasciatus (streams and rivers in the eastern Black Sea drainage) and Alburnoides eichwaldii (Kura and Aras rivers [a drainage of Kura River], Caspian Sea basin) by a combination of the following characters (none unique to the species):marked hump at nape, especially in specimens larger than 60 mm SL; partly developed ventral keel between pelvic fin and anal fin, scaleless 1/2 to 2/3 its length; body depth at dorsal-fin origin 29−32% SL; caudal peduncle depth 11−12% SL; 45–52+ 2–3 lateral-line scales; 9–12 scale rows between lateral line and dorsal-fin origin; 4–5 scale rows between lateral line and anal-fin origin, 10½–12½ branched anal-fin rays; 40–42 total vertebrae. PMID:23794819

Stream stability at highway structures.

DOT National Transportation Integrated Search

1995-11-01

This document provides guidelines for identifying stream instability problems at highway stream crossings and for the selection and design of appropriate countermeasures to mitigate potential damages to bridges and other highway components at stream ...

Long-term bed degradation in Maryland streams (phase 3, part I) : urban streams in the Piedmont Plateau province, [research summary].

DOT National Transportation Integrated Search

2014-09-01

Estimation of potential long-term down-cutting of the stream bed is necessary for evaluation and design of bridges for scour and culverts for fish passage. Existing guidelines for assessing this potential long-term bed degradation (LTBD) in Maryland ...

Alginate-Encapsulated Bacteria for the Treatment of Hypersaline Solutions in Microbial Fuel Cells.

PubMed

Alkotaini, Bassam; Tinucci, Samantha L; Robertson, Stuart J; Hasan, Kamrul; Minteer, Shelley D; Grattieri, Matteo

2018-04-27

A microbial fuel cell (MFC) based on a new wild-type strain of Salinivibrio sp. allowed the self-sustained treatment of hypersaline solutions (100 g L -1 , 1.71 m NaCl), reaching a removal of (87±11) % of the initial chemical oxygen demand after five days of operation, being the highest value achieved for hypersaline MFC. The degradation process and the evolution of the open circuit potential of the MFCs were correlated, opening the possibility for online monitoring of the treatment. The use of alginate capsules to trap bacterial cells, increasing cell density and stability, resulted in an eightfold higher power output, together with a more stable system, allowing operation up to five months with no maintenance required. The reported results are of critical importance to efforts to develop a sustainable and cost-effective system that treats hypersaline waste streams and reduces the quantity of polluting compounds released. © 2018 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

Research to inform policy on headwater streams: ongoing and future directions

EPA Science Inventory

Headwater streams are the exterior links of stream networks and represent a substantial proportion of U.S. stream miles. Alteration and loss of headwater streams have occurred without an understanding of the potential consequences to larger downstream waterbodies. Recent court ca...

Effects of outdoor education stream classes on substrate movement and macroinvertebrate colonization

USDA-ARS?s Scientific Manuscript database

Environmental education and stream quality monitoring overlap in stream classes conducted at resident outdoor education (ROE) programs. ROE programs frequently use the same stream locations for their stream classes. The repeated use of the same location can potentially degrade aquatic macroinverte...

PREDICTION OF FUNDAMENTAL ASSEMBLAGES OF MID-ATLANTIC HIGHLAND STREAM FISHES

EPA Science Inventory

A statistical software tool, the Stream Fish Assemblage Predictor (SFAP), based on stream sampling data collected by the EPA in the mid-Atlantic Highlands, was developed to predict potential stream fish communities using characteristics of the stream and its watershed.
Step o...

RIPARIAN FOREST INDICATORS OF POTENTIAL FUTURE STREAM CONDITION

EPA Science Inventory

Large wood in streams can play an extraordinarily important role in influencing the physical structure of streams and in providing habitat for aquatic organisms. Since wood is continually lost from streams, predicting the future input of wood to streams from riparian forests is c...

Photoelectron spectroscopy of aqueous solutions: Streaming potentials of NaX (X = Cl, Br, and I) solutions and electron binding energies of liquid water and X{sup −}

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kurahashi, Naoya; Horio, Takuya; Suzuki, Toshinori, E-mail: suzuki@kuchem.kyoto-u.ac.jp

2014-05-07

The streaming potentials of liquid beams of aqueous NaCl, NaBr, and NaI solutions are measured using soft X-ray, He(I), and laser multiphoton ionization photoelectron spectroscopy. Gaseous molecules are ionized in the vicinity of liquid beams and the photoelectron energy shifts are measured as a function of the distance between the ionization point and the liquid beam. The streaming potentials change their polarity with concentration of electrolytes, from which the singular points of concentration eliminating the streaming potentials are determined. The streaming currents measured in air also vanish at these concentrations. The electron binding energies of liquid water and I{sup −},more » Br{sup −}, and Cl{sup −} anions are revisited and determined more accurately than in previous studies.« less

Universal Effectiveness of Inducing Magnetic Moments in Graphene by Amino-Type sp3-Defects

PubMed Central

Wu, Liting; Gao, Shengqing; Li, Ming; Wen, Jianfeng; Li, Xinyu; Liu, Fuchi

2018-01-01

Inducing magnetic moments in graphene is very important for its potential application in spintronics. Introducing sp3-defects on the graphene basal plane is deemed as the most promising approach to produce magnetic graphene. However, its universal validity has not been very well verified experimentally. By functionalization of approximately pure amino groups on graphene basal plane, a spin-generalization efficiency of ~1 μB/100 NH2 was obtained for the first time, thus providing substantial evidence for the validity of inducing magnetic moments by sp3-defects. As well, amino groups provide another potential sp3-type candidate to prepare magnetic graphene. PMID:29673185

Molecular detection of six (endo-) symbiotic bacteria in Belgian mosquitoes: first step towards the selection of appropriate paratransgenesis candidates.

PubMed

Raharimalala, Fara Nantenaina; Boukraa, S; Bawin, T; Boyer, S; Francis, F

2016-04-01

Actually, the use of symbiotic bacteria is one of alternative solution to avoid vector resistance to pesticides. In Belgium, among 31 identified mosquito species, 10 were considered as potential vectors. Given to introduction risks of arbovirosis, the purpose of this study was to investigate the presence of symbiosis bacteria in potential mosquito vectors. Eleven species caught from 12 sites in Belgium were used: Culex pipiens s.l., Culex torrentium, Culex hortensis, Anopheles claviger, Anopheles maculipennis s.l., Anopheles plumbeus, Culiseta annulata, Ochlerotatus geniculatus, Ochlerotatus dorsalis, Aedes albopictus, and Coquillettidia richiardii. Six genera of symbiotic bacteria were screened: Wolbachia sp., Comamonas sp, Delftia sp., Pseudomonas sp., Acinetobacter sp., and Asaia sp. A total of 173 mosquito individuals (144 larvae and 29 adults) were used for the polymerase chain reaction screening. Wolbachia was not found in any Anopheles species nor Cx. torrentium. A total absence of Comamonas and Delftia was observed in all species. Acinetobacter, Pseudomonas, and Asaia were found in most of species with a high prevalence for Pseudomonas. These results were discussed to develop potential strategy and exploit the variable occurrence of symbiotic bacteria to focus on them to propose biological ways of mosquito control.

Groundwater exchanges near a channelized versus unmodified stream mouth discharging to a subalpine lake

USGS Publications Warehouse

Constantz, James; Naranjo, Ramon C.; Niswonger, Richard G.; Allander, Kip K.; Neilson, B.; Rosenberry, Donald O.; Smith, David W.; Rosecrans, C.; Stonestrom, David A.

2016-01-01

The terminus of a stream flowing into a larger river, pond, lake, or reservoir is referred to as the stream-mouth reach or simply the stream mouth. The terminus is often characterized by rapidly changing thermal and hydraulic conditions that result in abrupt shifts in surface water/groundwater (sw/gw) exchange patterns, creating the potential for unique biogeochemical processes and ecosystems. Worldwide shoreline development is changing stream-lake interfaces through channelization of stream mouths, i.e., channel straightening and bank stabilization to prevent natural meandering at the shoreline. In the central Sierra Nevada (USA), Lake Tahoe's shoreline has an abundance of both “unmodified” (i.e., not engineered though potentially impacted by broader watershed engineering) and channelized stream mouths. Two representative stream mouths along the lake's north shore, one channelized and one unmodified, were selected to compare and contrast water and heat exchanges. Hydraulic and thermal properties were monitored during separate campaigns in September 2012 and 2013 and sw/gw exchanges were estimated within the stream mouth-shoreline continuum. Heat-flow and water-flow patterns indicated clear differences in the channelized versus the unmodified stream mouth. For the channelized stream mouth, relatively modulated, cool-temperature, low-velocity longitudinal streambed flows discharged offshore beneath warmer buoyant lakeshore water. In contrast, a seasonal barrier bar formed across the unmodified stream mouth, creating higher-velocity subsurface flow paths and higher diurnal temperature variations relative to shoreline water. As a consequence, channelization altered sw/gw exchanges potentially altering biogeochemical processing and ecological systems in and near the stream mouth.

Substance P enhances proliferation and paracrine potential of adipose-derived stem cells in vitro

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kim, Suna; Piao, Jiyuan; Son, Youngsook

Stem cells have tremendous promise to treat intractable diseases. Notably, adipose-derived stem cells (ADSCs) are actively being investigated because of ease of sampling and high repopulation capacity in vitro. ADSCs can exert a therapeutic effect through differentiation and paracrine potential, and these actions have been proven in many diseases, including cutaneous and inflammatory diseases. Transplantation of ADSCs necessitates therapeutic quantities and thus, long term ex vivo culture of ADSCs. However, this procedure can impair the activity of ADSCs and provoke cellular senescence, leading to low efficacy in vivo. Accordingly, strategies to restore cellular activity and inhibit senescence of stem cells during ex vivo culturemore » are needed for stem cell-based therapies. This study evaluated a potential supplementary role of Substance P (SP) in ADSC ex vivo culture. After confirming that the ADSC cell cycle was damaged by passage 6 (p6), ADSCs at p6 were cultured with SP, and their proliferation rates, cumulative cell numbers, cytokine profiles, and impact on T/endothelial cells were assessed. Long-term culture weakened proliferation ability and secretion of the cytokines, transforming growth factor-beta 1 (TGF-beta1), vascular endothelial growth factor (VEGF), and stromal cell derived factor-1 alpha (SDF-1alpha) in ADSCs. However, SP treatment reduced the population doubling time (PDT), enabling gain of a sufficient number of ADSCs at early passages. In addition, SP restored cytokine secretion, enhancing the ADSC-mediated paracrine effect on T cell and human umbilical vein endothelial cells (HUVECs). Taken together, these results suggest that SP can retain the therapeutic effect of ADSCs by elevating their proliferative and paracrine potential in ex vivo culture. - Highlights: • Long-term culture of ADSCs leads to cell senescence. • Paracrine potential of ADSC decreases as passage number increases. • SP enhances the weakened proliferation capacity of ADSCs. • SP stimulates cytokine secretion from ADSC with impaired paracrine potential.« less

Experimental reductions in stream flow alter litter processing and consumer subsidies in headwater streams

Treesearch

Robert M. Northington; Jackson R. Webster

2017-01-01

SummaryForested headwater streams are connected to their surrounding catchments by a reliance on terrestrial subsidies. Changes in precipitation patterns and stream flow represent a potential disruption in stream ecosystem function, as the delivery of terrestrial detritus to aquatic consumers and...

Modeling the effects of LID practices on streams health at watershed scale

NASA Astrophysics Data System (ADS)

Shannak, S.; Jaber, F. H.

2013-12-01

Increasing impervious covers due to urbanization will lead to an increase in runoff volumes, and eventually increase flooding. Stream channels adjust by widening and eroding stream bank which would impact downstream property negatively (Chin and Gregory, 2001). Also, urban runoff drains in sediment bank areas in what's known as riparian zones and constricts stream channels (Walsh, 2009). Both physical and chemical factors associated with urbanization such as high peak flows and low water quality further stress aquatic life and contribute to overall biological condition of urban streams (Maxted et al., 1995). While LID practices have been mentioned and studied in literature for stormwater management, they have not been studied in respect to reducing potential impact on stream health. To evaluate the performance and the effectiveness of LID practices at a watershed scale, sustainable detention pond, bioretention, and permeable pavement will be modeled at watershed scale. These measures affect the storm peak flows and base flow patterns over long periods, and there is a need to characterize their effect on stream bank and bed erosion, and aquatic life. These measures will create a linkage between urban watershed development and stream conditions specifically biological health. The first phase of this study is to design and construct LID practices at the Texas A&M AgriLife Research and Extension Center-Dallas, TX to collect field data about the performance of these practices on a smaller scale. The second phase consists of simulating the performance of LID practices on a watershed scale. This simulation presents a long term model (23 years) using SWAT to evaluate the potential impacts of these practices on; potential stream bank and bed erosion, and potential impact on aquatic life in the Blunn Watershed located in Austin, TX. Sub-daily time step model simulations will be developed to simulate the effectiveness of the three LID practices with respect to reducing potential erosion from stream beds and banks by studying annual average excess shear and reducing potential impact on aquatic life by studying rapid changes and variation in flow regimes in urban streams. This study will contribute to develop a methodology that evaluates the impact of hydrological changes that occur due to urban development, on aquatic life, stream bank and bed erosion. This is an ongoing research project and results will be shared and discussed at the conference.

Phylogenetic Analysis and Antimicrobial Profiles of Cultured Emerging Opportunistic Pathogens (Phyla Actinobacteria and Proteobacteria) Identified in Hot Springs.

PubMed

Jardine, Jocelyn Leonie; Abia, Akebe Luther King; Mavumengwana, Vuyo; Ubomba-Jaswa, Eunice

2017-09-15

Hot spring water may harbour emerging waterborne opportunistic pathogens that can cause infections in humans. We have investigated the diversity and antimicrobial resistance of culturable emerging and opportunistic bacterial pathogens, in water and sediment of hot springs located in Limpopo, South Africa. Aerobic bacteria were cultured and identified using 16S ribosomal DNA (rDNA) gene sequencing. The presence of Legionella spp. was investigated using real-time polymerase chain reaction. Isolates were tested for resistance to ten antibiotics representing six different classes: β-lactam (carbenicillin), aminoglycosides (gentamycin, kanamycin, streptomycin), tetracycline, amphenicols (chloramphenicol, ceftriaxone), sulphonamides (co-trimoxazole) and quinolones (nalidixic acid, norfloxacin). Gram-positive Kocuria sp. and Arthrobacter sp. and gram-negative Cupriavidus sp., Ralstonia sp., Cronobacter sp., Tepidimonas sp., Hafnia sp. and Sphingomonas sp. were isolated, all recognised as emerging food-borne pathogens. Legionella spp. was not detected throughout the study. Isolates of Kocuria , Arthrobacter and Hafnia and an unknown species of the class Gammaproteobacteria were resistant to two antibiotics in different combinations of carbenicillin, ceftriaxone, nalidixic acid and chloramphenicol. Cronobacter sp. was sensitive to all ten antibiotics. This study suggests that hot springs are potential reservoirs for emerging opportunistic pathogens, including multiple antibiotic resistant strains, and highlights the presence of unknown populations of emerging and potential waterborne opportunistic pathogens in the environment.

Enkephalinase inhibitor potentiates substance P- and electrically induced contraction in ferret trachea.

PubMed

Sekizawa, K; Tamaoki, J; Nadel, J A; Borson, D B

1987-10-01

To determine the role of endogenous enkephalinase (EC 3.4.24.11) in regulating peptide-induced contraction of airway smooth muscle, we studied the effect of the enkephalinase inhibitor, leucine-thiorphan (Leu-thiorphan), on responses of isolated ferret tracheal smooth muscle segments to substance P (SP) and to electrical field stimulation (EFS). Leu-thiorphan shifted the dose-response curve to SP to lower concentrations. Atropine or the SP antagonist [D-Pro2,D-Trp7,9]SP significantly inhibited SP-induced contractions in the presence of Leu-thiorphan. Leu-thiorphan increased the contractile responses to EFS dose dependently, an effect that was significantly inhibited by the SP antagonist [D-Pro2,D-Trp7,9]SP. SP, in a concentration that did not cause contraction, increased the contractile responses to EFS. This effect was augmented by Leu-thiorphan dose dependently and was not inhibited by hexamethonium or by phentolamine but was inhibited by atropine. Because contractile responses to acetylcholine were not significantly affected by SP or by Leu-thiorphan, the potentiating effects of SP were probably on presynaptic-postganglionic cholinergic neurotransmission. Captopril, bestatin, or leupeptin did not augment contractions, suggesting that enkephalinase was responsible for the effects. These results suggest that endogenous tachykinins modulate smooth muscle contraction and endogenous enkephalinase modulates contractions produced by endogenous or exogenous tachykinins and tachykinin-induced facilitation of cholinergic neurotransmission.

Infection patterns of Nile tilapia (Oreochromis niloticus L.) by two helminth species with contrasting life styles.

PubMed

Akoll, Peter; Konecny, Robert; Mwanja, Wilson W; Schiemer, Fritz

2012-04-01

The larval stages of Bolbophorus sp. (digenean) and Amirthalingamia macracantha (cestode) are frequently reported in Oreochromis niloticus in Uganda. Little, however, is known about their infection patterns. This study examined the influence of habitat type, host size, and sex and weather patterns on the parasite populations in Uganda. A total of 650 fish were collected between January and November 2008 from a reservoir, cages, fishponds and a stream. The prevalence and intensity of A. macracantha and the prevalence of Bolbophorus sp. differed across the water bodies reflecting the effect of habitat characteristics on parasite transmission. Host sex did not significantly influence the infection patterns, although female fish were slightly more parasitized than male and sexually undifferentiated individuals. The fish size was positively correlated with helminth infections demonstrating accumulation and prolonged exposure of larger (older) fish to the parasites. The metacercariae population did not vary significantly across months, while monthly A. macracantha infection fluctuated markedly. With regard to rain seasons, higher prevalence and intensity of A. macracantha were recorded in wet season. For Bolbophorus sp., only the prevalence varied with seasons, with higher prevalence recorded in the dry season than in wet season. Generally, Bolbophorus sp. responded weakly to changes in water body, host sex and size and weather patterns. Rainfall appears to be an essential cue for coracidia hatching.

Long-term bed degradation in Maryland streams (phase 3, part I) : urban streams in the Piedmont Plateau province.

DOT National Transportation Integrated Search

2014-05-01

Estimation of potential long-term down-cutting of the stream bed is necessary for evaluation and design of bridges for scour and culverts for fish passage. The purpose of this study has been to improve predictions of this potential long-term bed degr...

Carotenoids, Phenolic Compounds and Tocopherols Contribute to the Antioxidative Properties of Some Microalgae Species Grown on Industrial Wastewater.

PubMed

Safafar, Hamed; van Wagenen, Jonathan; Møller, Per; Jacobsen, Charlotte

2015-12-11

This study aimed at investigating the potential of microalgae species grown on industrial waste water as a new source of natural antioxidants. Six microalgae from different classes, including Phaeodactylum sp. (Bacillariophyceae), Nannochloropsis sp. (Eustigmatophyceae), Chlorella sp., Dunaniella sp., and Desmodesmus sp. (Chlorophyta), were screened for their antioxidant properties using different in vitro assays. Natural antioxidants, including pigments, phenolics, and tocopherols, were measured in methanolic extracts of microalgae biomass. Highest and lowest concentrations of pigments, phenolic compounds, and tocopherols were found in Desmodesmus sp. and Phaeodactylum tricornuotom microalgae species, respectively. The results of each assay were correlated to the content of natural antioxidants in microalgae biomass. Phenolic compounds were found as major contributors to the antioxidant activity in all antioxidant tests while carotenoids were found to contribute to the 1,1-diphenyl-2-picryl-hydrazil (DPPH) radical scavenging activity, ferrous reduction power (FRAP), and ABTS-radical scavenging capacity activity. Desmodesmus sp. biomass represented a potentially rich source of natural antioxidants, such as carotenoids (lutein), tocopherols, and phenolic compounds when cultivated on industrial waste water as the main nutrient source.

Carotenoids, Phenolic Compounds and Tocopherols Contribute to the Antioxidative Properties of Some Microalgae Species Grown on Industrial Wastewater

PubMed Central

Safafar, Hamed; van Wagenen, Jonathan; Møller, Per; Jacobsen, Charlotte

2015-01-01

This study aimed at investigating the potential of microalgae species grown on industrial waste water as a new source of natural antioxidants. Six microalgae from different classes, including Phaeodactylum sp. (Bacillariophyceae), Nannochloropsis sp. (Eustigmatophyceae), Chlorella sp., Dunaniella sp., and Desmodesmus sp. (Chlorophyta), were screened for their antioxidant properties using different in vitro assays. Natural antioxidants, including pigments, phenolics, and tocopherols, were measured in methanolic extracts of microalgae biomass. Highest and lowest concentrations of pigments, phenolic compounds, and tocopherols were found in Desmodesmus sp. and Phaeodactylum tricornuotom microalgae species, respectively. The results of each assay were correlated to the content of natural antioxidants in microalgae biomass. Phenolic compounds were found as major contributors to the antioxidant activity in all antioxidant tests while carotenoids were found to contribute to the 1,1-diphenyl-2-picryl-hydrazil (DPPH) radical scavenging activity, ferrous reduction power (FRAP), and ABTS-radical scavenging capacity activity. Desmodesmus sp. biomass represented a potentially rich source of natural antioxidants, such as carotenoids (lutein), tocopherols, and phenolic compounds when cultivated on industrial waste water as the main nutrient source. PMID:26690454

Study of a Multi-phase Hybrid Heat Exchanger-Reaction (HEX Reactor): Part 1 - Experimental Characterization

DTIC Science & Technology

2014-01-01

considerably higher frictional losses than if the liquid and gas phases were simply injected at the inlet as in references [11,12]. Although the...individual channel face opposite directions to form a tor- tuous network of crisscrossing passageways. Fluid streams direc - ted along the upper and...gravity SP single-phase TP two-phase c corrugated section e equivalent g gas phase h hydraulic l liquid phase pp port-to-port N. Niedbalski et al

Cultural Resources Investigation of a Proposed Flood Control Project along the Sheyenne River, at West Fargo, Cass County, North Dakota. Phase I.

DTIC Science & Technology

1988-01-15

cottonwood (Po2ulus salrgenti), sumac (Ehus sp.), peach and sandbar willows (Salix amvdaloides; . terio), and slippery elm (Ulmus rubra). 3.4.2 Bluestem...forest of elm , oak, ash, hackberry, cottonwood, and aspen along the major streams. Archaeological evidence indicates that prehistoric people along the...black willow (Salix nifra), and American elm (Ulmus amicnan). Other components include: boxelder (Acer neaundo), red maple (A. Subrum), silver maple (A

Evaluating the perennial stream using logistic regression in central Taiwan

NASA Astrophysics Data System (ADS)

Ruljigaljig, T.; Cheng, Y. S.; Lin, H. I.; Lee, C. H.; Yu, T. T.

2014-12-01

This study produces a perennial stream head potential map, based on a logistic regression method with a Geographic Information System (GIS). Perennial stream initiation locations, indicates the location of the groundwater and surface contact, were identified in the study area from field survey. The perennial stream potential map in central Taiwan was constructed using the relationship between perennial stream and their causative factors, such as Catchment area, slope gradient, aspect, elevation, groundwater recharge and precipitation. Here, the field surveys of 272 streams were determined in the study area. The areas under the curve for logistic regression methods were calculated as 0.87. The results illustrate the importance of catchment area and groundwater recharge as key factors within the model. The results obtained from the model within the GIS were then used to produce a map of perennial stream and estimate the location of perennial stream head.

The potential of soil fungi associated with potato rhizosphere to control root knot nematode (Meloidogyne spp.) on potato

NASA Astrophysics Data System (ADS)

Utari, E.; Lisnawita; Safni, I.; Lubis, K.; Tantawi, AR; Hasanuddin

2018-02-01

The root knot nematode (Meloidogyne spp.) is one of important pathogens on potato crops in North Sumatra, Indonesia. This nematode causes significant crop losses on potatoes directly and indirectly. The effect of fungal isolates (Trichoderma sp. 1, Mucor sp.1, Aspergillus sp. 2, Mucor sp. 2) that were isolated from rhizosphere of potato in North Sumatra were studied in green house experiments on the growth of potato and the reproduction of the nematode (Meloidogyne spp). The results showed that Trichoderma sp. 1 caused a significant gall reduction, while Mucor sp.1 and Mucor sp.2 could improve the growth of potato.

Thinking beyond the Bioreactor Box: Incorporating Stream Ecology into Edge-of-Field Nitrate Management.

PubMed

Goeller, Brandon C; Febria, Catherine M; Harding, Jon S; McIntosh, Angus R

2016-05-01

Around the world, artificially drained agricultural lands are significant sources of reactive nitrogen to stream ecosystems, creating substantial stream health problems. One management strategy is the deployment of denitrification enhancement tools. Here, we evaluate the factors affecting the potential of denitrifying bioreactors to improve stream health and ecosystem services. The performance of bioreactors and the structure and functioning of stream biotic communities are linked by environmental parameters like dissolved oxygen and nitrate-nitrogen concentrations, dissolved organic carbon availability, flow and temperature regimes, and fine sediment accumulations. However, evidence of bioreactors' ability to improve waterway health and ecosystem services is lacking. To improve the potential of bioreactors to enhance desirable stream ecosystem functioning, future assessments of field-scale bioreactors should evaluate the influences of bioreactor performance on ecological indicators such as primary production, organic matter processing, stream metabolism, and invertebrate and fish assemblage structure and function. These stream health impact assessments should be conducted at ecologically relevant spatial and temporal scales. Bioreactors have great potential to make significant contributions to improving water quality, stream health, and ecosystem services if they are tailored to site-specific conditions and implemented strategically with land-based and stream-based mitigation tools within watersheds. This will involve combining economic, logistical, and ecological information in their implementation. Copyright © by the American Society of Agronomy, Crop Science Society of America, and Soil Science Society of America, Inc.

Research note: Mapping spatial patterns in sewer age, material, and proximity to surface waterways to infer sewer leakage hotspots

USGS Publications Warehouse

Hopkins, Kristina G.; Bain, Daniel J.

2018-01-01

Identifying areas where deteriorating sewer infrastructure is in close proximity to surface waterways is needed to map likely connections between sewers and streams. We present a method to estimate sewer installation year and deterioration status using historical maps of the sewer network, parcel-scale property assessment data, and pipe material. Areas where streams were likely buried into the sewer system were mapped by intersecting the historical stream network derived from a 10-m resolution digital elevation model with sewer pipe locations. Potential sewer leakage hotspots were mapped by identifying where aging sewer pipes are in close proximity (50-m) to surface waterways. Results from Pittsburgh, Pennsylvania (USA), indicated 41% of the historical stream length was lost or buried and the potential interface between sewers and streams is great. The co-location of aging sewer infrastructure (>75 years old) near stream channels suggests that 42% of existing streams are located in areas with a high potential for sewer leakage if sewer infrastructure fails. Mapping the sewer-stream interface provides an approach to better understand areas were failing sewers may contribute a disproportional amount of nutrients and other pathogens to surface waterways.

A review of the Nearctic genus Prostoia (Ricker) (Plecoptera, Nemouridae), with the description of a new species and a surprising range extension for P. hallasi Kondratieff & Kirchner.

PubMed

Grubbs, Scott A; Baumann, Richard W; DeWalt, R Edward; Tweddale, Tari

2014-01-01

The Nearctic genus Prostoia (Plecoptera: Nemouridae) is reviewed. Prostoia ozarkensis sp. n. is described from the male and female adult stages mainly from the Interior Highland region encompassing portions of Arkansas, Missouri, and Oklahoma. Prostoia ozarkensis sp. n. appears most closely related to two species, one distributed broadly across the western Nearctic region, P. besametsa (Ricker), and one found widely throughout the central and eastern Nearctic regions, P. completa (Walker). A surprising range extension is noted for P. hallasi Kondratieff & Kirchner, a species once known only from the Great Dismal Swamp, from small upland streams in southern Illinois. Additional new state records are documented for P. besametsa, P. completa, P. hallasi and P. similis (Hagen). Taxonomic keys to Prostoia males and females are provided, and scanning electron micrographs of adult genitalia of all species are given.

A review of the Nearctic genus Prostoia (Ricker) (Plecoptera, Nemouridae), with the description of a new species and a surprising range extension for P. hallasi Kondratieff & Kirchner

PubMed Central

Grubbs, Scott A.; Baumann, Richard W.; DeWalt, R. Edward; Tweddale, Tari

2014-01-01

Abstract The Nearctic genus Prostoia (Plecoptera: Nemouridae) is reviewed. Prostoia ozarkensis sp. n. is described from the male and female adult stages mainly from the Interior Highland region encompassing portions of Arkansas, Missouri, and Oklahoma. Prostoia ozarkensis sp. n. appears most closely related to two species, one distributed broadly across the western Nearctic region, P. besametsa (Ricker), and one found widely throughout the central and eastern Nearctic regions, P. completa (Walker). A surprising range extension is noted for P. hallasi Kondratieff & Kirchner, a species once known only from the Great Dismal Swamp, from small upland streams in southern Illinois. Additional new state records are documented for P. besametsa, P. completa, P. hallasi and P. similis (Hagen). Taxonomic keys to Prostoia males and females are provided, and scanning electron micrographs of adult genitalia of all species are given. PMID:24843258

A model for evaluating stream temperature response to climate change scenarios in Wisconsin

USGS Publications Warehouse

Westenbroek, Stephen M.; Stewart, Jana S.; Buchwald, Cheryl A.; Mitro, Matthew G.; Lyons, John D.; Greb, Steven

2010-01-01

Global climate change is expected to alter temperature and flow regimes for streams in Wisconsin over the coming decades. Stream temperature will be influenced not only by the predicted increases in average air temperature, but also by changes in baseflow due to changes in precipitation patterns and amounts. In order to evaluate future stream temperature and flow regimes in Wisconsin, we have integrated two existing models in order to generate a water temperature time series at a regional scale for thousands of stream reaches where site-specific temperature observations do not exist. The approach uses the US Geological Survey (USGS) Soil-Water-Balance (SWB) model, along with a recalibrated version of an existing artificial neural network (ANN) stream temperature model. The ANN model simulates stream temperatures on the basis of landscape variables such as land use and soil type, and also includes climate variables such as air temperature and precipitation amounts. The existing ANN model includes a landscape variable called DARCY designed to reflect the potential for groundwater recharge in the contributing area for a stream segment. SWB tracks soil-moisture and potential recharge at a daily time step, providing a way to link changing climate patterns and precipitation amounts over time to baseflow volumes, and presumably to stream temperatures. The recalibrated ANN incorporates SWB-derived estimates of potential recharge to supplement the static estimates of groundwater flow potential derived from a topographically based model (DARCY). SWB and the recalibrated ANN will be supplied with climate drivers from a suite of general circulation models and emissions scenarios, enabling resource managers to evaluate possible changes in stream temperature regimes for Wisconsin.

Biocatalytic desulfurization of thiophenic compounds and crude oil by newly isolated bacteria

PubMed Central

Mohamed, Magdy El-Said; Al-Yacoub, Zakariya H.; Vedakumar, John V.

2015-01-01

Microorganisms possess enormous highly specific metabolic activities, which enable them to utilize and transform nearly every known chemical class present in crude oil. In this context, one of the most studied biocatalytic processes is the biodesulfurization (BDS) of thiophenic sulfur-containing compounds such as benzothiophene (BT) and dibenzothiophene (DBT) in crude oils and refinery streams. Three newly isolated bacterial strains, which were affiliated as Rhodococcus sp. strain SA11, Stenotrophomonas sp. strain SA21, and Rhodococcus sp. strain SA31, were enriched from oil contaminated soil in the presence of DBT as the sole S source. GC-FID analysis of DBT-grown cultures showed consumption of DBT, transient formation of DBT sulfone (DBTO2) and accumulation of 2-hydroxybiphenyl (2-HBP). Molecular detection of the plasmid-borne dsz operon, which codes for the DBT desulfurization activity, revealed the presence of dszA, dszB, and dszC genes. These results point to the operation of the known 4S pathway in the BDS of DBT. The maximum consumption rate of DBT was 11 μmol/g dry cell weight (DCW)/h and the maximum formation rate of 2-HBP formation was 4 μmol/g DCW/h. Inhibition of both cell growth and DBT consumption by 2-HBP was observed for all isolates but SA11 isolate was the least affected. The isolated biocatalysts desulfurized other model DBT alkylated homologs. SA11 isolate was capable of desulfurizing BT as well. Resting cells of SA11 exhibited 10% reduction in total sulfur present in heavy crude oil and 18% reduction in total sulfur present in the hexane-soluble fraction of the heavy crude oil. The capabilities of the isolated bacteria to survive and desulfurize a wide range of S compounds present in crude oil are desirable traits for the development of a robust BDS biocatalyst to upgrade crude oils and refinery streams. PMID:25762990

Protective effect of Spirulina platensis enriched in phenolic compounds against hepatotoxicity induced by CCl4.

PubMed

Kepekçi, Remziye Aysun; Polat, Sait; Çelik, Ahmet; Bayat, Nuray; Saygideger, Saadet Demirörs

2013-12-01

Phenolic compounds make up the major secondary metabolites with high pharmaceutical potential. Microalgae were reported to contain low amounts of phenolic compounds. The present study aimed to investigate the hepatoprotective potential of biomass of Spirulina platensis enriched in phenolic compounds. The protective effects of the biomass of S. platensis with low amounts of phenolics (SP1) and with high amounts of phenolics (SP2) against CCl4-induced acute hepatotoxicity were evaluated in rats. The increased levels of ALT, AST and MDA along with decreased activities of SOD and CAT were significantly (p<0.01) ameliorated by SP2. Histological examinations revealed that SP2 was more potent than SP1 in protecting the liver from toxic injury of CCl4 and preserving the hepatocyte ultrastructure. The lesions including necrosis, lymphocyte infiltration, ballooning degeneration and hepatocyte injury as irregular lamellar organisation, dilations in endoplasmic reticulums and the presence of great number of cytoplasmic vacuolization were healed by SP2. Copyright © 2013 Elsevier Ltd. All rights reserved.

Urban Streams as Transporters or Transformers of Carbon and Nutrients: Does Size Matter?

NASA Astrophysics Data System (ADS)

Wood, K. L.; Kaushal, S.

2017-12-01

Urbanization degrades water quality, channel form/ function, and related ecosystem services. Biological and hydrological responses to urbanization vary between sites potentially due to watershed size, channel size, and geomorphology along the broader urban watershed continuum. We investigated if/when the size of a stream can influence water quality in urban watersheds. We conducted high-frequency sampling of a small polluted headwater stream and a large restored stream in the Anacostia watershed, Washington D.C. metro area. Temperature, pH, conductivity, discharge, dissolved inorganic carbon (DIC), dissolved organic carbon (DOC) and total dissolved nitrogen (TDN) were measured 2-3 times a week at two locations near the University of Maryland campus. DOC showed strong positive linear relationships with discharge at both sites, but TDN showed significant but contrasting linear relationships in the small polluted headwater site vs. the larger restored stream. In the larger restored stream, TDN significantly decreased with increasing water temperatures, which potentially suggested biological uptake. In the headwater stream, TDN concentrations significantly increased with increasing temperature, which suggests a possible seasonal input from terrestrial or in-stream sources. Interestingly, there were significant relationships between DIC and DOC in the larger restored stream, which suggested that there may have been a biological coupling of carbon forms due to stream ecosystem metabolism. Differences in relationships between TDN, DIC, and DOC and discharge, pH, and water temperatures may indicate the effects of stream size and floodplain restoration on water chemistry responses to human inputs. Larger streams may show greater potential for biogeochemical transformations, and stream size may need to be better evaluated in efforts to prioritize restoration strategies.

Long-term bed degradation in Maryland streams (Phase III Part 2) : urban streams in the Piedmont Plateau Province : research report : final report.

DOT National Transportation Integrated Search

2017-02-01

Estimation of potential long-term down-cutting of the stream bed is necessary for evaluation and design of bridges for scour and culverts for fish passage. The purpose of this study has been to improve predictions of this potential long-term bed degr...

Short-term stream water temperature observations permit rapid assessment of potential climate change impacts

Treesearch

Peter Caldwell; Catalina Segura; Shelby Gull Laird; Ge Sun; Steven G. McNulty; Maria Sandercock; Johnny Boggs; James M. Vose

2015-01-01

Assessment of potential climate change impacts on stream water temperature (Ts) across large scales remains challenging for resource managers because energy exchange processes between the atmosphere and the stream environment are complex and uncertain, and few long-term datasets are available to evaluate changes over time. In this study, we...

Surface-potential undulation of Alq3 thin films prepared on ITO, Au, and n-Si.

PubMed

Ozasa, Kazunari; Ito, Hiromi; Maeda, Mizuo; Hara, Masahiko

2012-01-01

The surface potential (SP) morphology on thin films of tris(8-hydroxyquinolinato) aluminum (Alq3) was investigated with Kelvin probe force microscopy. Thin Alq3 films of 100 nm were prepared on ITO/glass substrates, Au/mica substrates, and n-Si substrates. Cloud-like morphologies of the SP undulation with 200-400 nm in lateral size were observed for all three types of the substrates. New larger peaks were observed in the cloud-like morphologies when the surfaces were exposed shortly to a light, while the SP average was reduced monotonically. The nonuniform distribution of charged traps and mobility was deduced from the SP undulation morphology and its photoexposure dependences.

ACTION-SPACE CLUSTERING OF TIDAL STREAMS TO INFER THE GALACTIC POTENTIAL

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sanderson, Robyn E.; Helmi, Amina; Hogg, David W., E-mail: robyn@astro.columbia.edu

2015-03-10

We present a new method for constraining the Milky Way halo gravitational potential by simultaneously fitting multiple tidal streams. This method requires three-dimensional positions and velocities for all stars to be fit, but does not require identification of any specific stream or determination of stream membership for any star. We exploit the principle that the action distribution of stream stars is most clustered when the potential used to calculate the actions is closest to the true potential. Clustering is quantified with the Kullback-Leibler Divergence (KLD), which also provides conditional uncertainties for our parameter estimates. We show, for toy Gaia-like datamore » in a spherical isochrone potential, that maximizing the KLD of the action distribution relative to a smoother distribution recovers the input potential. The precision depends on the observational errors and number of streams; using K III giants as tracers, we measure the enclosed mass at the average radius of the sample stars accurate to 3% and precise to 20%-40%. Recovery of the scale radius is precise to 25%, biased 50% high by the small galactocentric distance range of stars in our mock sample (1-25 kpc, or about three scale radii, with mean 6.5 kpc). 20-25 streams with at least 100 stars each are required for a stable confidence interval. With radial velocities (RVs) to 100 kpc, all parameters are determined with ∼10% accuracy and 20% precision (1.3% accuracy for the enclosed mass), underlining the need to complete the RV catalog for faint halo stars observed by Gaia.« less

Occupancy modeling and estimation of the holiday darter species complex within the Etowah River system

USGS Publications Warehouse

Anderson, Gregory B.; Freeman, Mary C.; Hagler, Megan M.; Freeman, Byron J.

2012-01-01

Documenting the status of rare fishes is a crucial step in effectively managing populations and implementing regulatory mechanisms of protection. In recent years, site occupancy has become an increasingly popular metric for assessing populations, but species distribution models that do not account for imperfect detection can underestimate the proportion of sites occupied and the strength of the relationship with a hypothesized covariate. However, valid detection requires temporal or spatial replication, which is often not feasible due to logistical or budget constraints. In this study, we used a method that allowed for spatial replication during a single visit to evaluate the current status of the holiday darter species complex, Etheostoma sp. cf. E. brevirostrum, within the Etowah River system. Moreover, the modeling approach used in this study facilitated comparisons of factors influencing stream occupancy as well as species detection within sites. The results suggest that there is less habitat available for the Etowah holiday darter form (Etheostoma sp. cf. E. brevirostrum B) than for the Amicalola holiday darter form (Etheostoma sp. cf. E. brevirostrum A). Additionally, occupancy models suggest that even small decreases in forest cover within these headwater systems adversely affect holiday darter populations.

Biohythane production from marine macroalgae Sargassum sp. coupling dark fermentation and anaerobic digestion.

PubMed

Costa, José C; Oliveira, João V; Pereira, Maria A; Alves, Maria M; Abreu, Angela A

2015-08-01

Potential biohythane production from Sargassum sp. was evaluated in a two stage process. In the first stage, hydrogen dark fermentation was performed by Caldicellulosiruptor saccharolyticus. Sargassum sp. concentrations (VS) of 2.5, 4.9 and 7.4gL(-1) and initial inoculum concentrations (CDW) of 0.04 and 0.09gL(-1) of C. saccharolyticus were used in substrate/inoculum ratios ranging from 28 to 123. The end products from hydrogen production process were subsequently used for biogas production. The highest hydrogen and methane production yields, 91.3±3.3Lkg(-1) and 541±10Lkg(-1), respectively, were achieved with 2.5gL(-1) of Sargassum sp. (VS) and 0.09gL(-1)of inoculum (CDW). The biogas produced contained 14-20% of hydrogen. Potential energy production from Sargassum sp. in two stage process was estimated in 242GJha(-1)yr(-1). A maximum energy supply of 600EJyr(-1) could be obtained from the ocean potential area for macroalgae production. Copyright © 2015 Elsevier Ltd. All rights reserved.

Dipeptidyl(amino)peptidase IV and aminopeptidase M metabolize circulating substance P in vivo.

PubMed

Ahmad, S; Wang, L; Ward, P E

1992-03-01

Recent studies have demonstrated that Fischer-344 rats from Japanese Charles River Inc. specifically lack dipeptidyl(amino)peptidase IV (DAP IV-negative; EC 3.4.14.5), whereas Fischer-344 rats from sources within the United States (DAP IV-positive) possess normal DAP IV activity. In the present study, plasma from DAP IV-positive rats metabolized substance P (SP) (5.37 +/- 0.25 nmol/min/ml) via the actions of angiotensin-converting enzyme (EC 3.4.15.1) (1.86 +/- 0.50 nmol/min/ml) and DAP IV (2.56 +/- 0.42 nmol/min/ml). DAP IV sequentially converted SP to SP[3-11] and SP[5-11]. The SP[5-11] metabolite was then rapidly hydrolyzed by plasma aminopeptidase M (AmM; EC 3.4.11.2) (36.2 +/- 4.2 nmol/min/ml). In contrast, SP metabolism by plasma from DAP IV-negative rats was less than half that of control animals (2.14 +/- 0.06 nmol/min/ml), due to a complete lack of DAP IV hydrolysis. The absence of DAP IV was not associated with any differences in angiotensin-converting enzyme-mediated hydrolysis of SP (1.45 +/- 0.11 nmol/min/ml) or AmM-mediated hydrolysis of SP[5-11] (37.1 +/- 0.9 nmol/min/ml). Consistent with this deficiency in SP metabolism, SP was more potent in vivo in stimulating salivary secretion in DAP IV-negative rats compared to DAP IV-positive animals. Potentiation was specific in that SP[5-11], an SP fragment resistant to DAP IV, was equipotent in DAP IV-negative and positive animals. SP[5-11]-induced salivary secretion was potentiated in both strains when AmM-mediated hydrolysis was inhibited by amastatin (20 nmol/min, i.v.). These data provide direct evidence for a significant role for DAP IV and AmM in the in vivo processing of SP and active SP metabolites.

Modulation of [3H]DAGO binding by substance P (SP) and SP fragments in the mouse brain and spinal cord via MU1 interactions.

PubMed

Krumins, S A; Kim, D C; Seybold, V S; Larson, A A

1989-01-01

Binding of [3H]DAGO to fresh, frozen or beta-funaltrexamine (beta-FNA) pretreated membranes of mouse brain and spinal cord was extensively studied using substance P (SP) or SP fragments as potential competitors and/or modulators. The objective was to determine whether SP exerts its analgesic effect by interacting with mu opioid receptors. The affinity of DAGO was reduced and binding capacity was increased in the presence of SP or the N-terminal SP fragments SP(1-9) and SP(1-4) but not the C-terminal SP fragment SP(5-11). Because sub-nanomolar concentrations of SP or N-terminal SP fragments displaced [3H] DAGO binding to a minor but detectable degree, it is suggested that SP interacts with mu 1 sites through its N-terminus portion. The effect of SP on DAGO binding was less in the spinal cord compared to the rest of the brain. Modulation of DAGO binding by SP was enhanced in the brain after pretreatment of membranes with the narcotic antagonist beta-FNA. These results suggest a novel mechanism for the analgesic action of SP.

Isolation and characterization of Leptolyngbya sp. KIOST-1, a basophilic and euryhaline filamentous cyanobacterium from an open paddle-wheel raceway Arthrospira culture pond in Korea.

PubMed

Kim, J H; Choi, W; Jeon, S-M; Kim, T; Park, A; Kim, J; Heo, S-J; Oh, C; Shim, W-B; Kang, D-H

2015-12-01

Cyanobacteria have been used as sustainable bioresource producers for foods, feeds and other valuable natural products. However, selection of a new species (other than Arthrospira), with advantageous properties for alimentary purposes, continues to be a challenge due to potential toxicity and low biomass productivity. In this study, we report a valuable filamentous cyanobacterium isolated from Korea. Morphological and phylogenetic analyses demonstrated that the isolate belongs to the genus Leptolyngbya, and consequently designated Leptolyngbya sp. KIOST-1. Interestingly, Leptolyngbya sp. KIOST-1 possessed numerous advantageous characteristics for biomass production, similar to Arthrospira. The isolate readily propagated in SOT medium with efficient biomass productivity, and its optimum growth was observed at 30°C under alkaline and saline conditions. Moreover, more than half of the cellular components in Leptolyngbya sp. KIOST-1 were composed of protein, with approx. 40% of essential amino acids. Most importantly, no significant cytotoxicity was detected in the isolate. Leptolyngbya sp. KIOST-1 has a number of advantageous characteristics for alimentary purposes due to its efficient productivity, high protein content and lack of potential cytotoxicity. Leptolyngbya sp. KIOST-1 may be considered a potential candidate for industrial biomass production, similar to Arthrospira. © 2015 The Society for Applied Microbiology.

Evaluation of Süleymanköy (Diyarbakir, Eastern Turkey) and Seferihisar (Izmir, Western Turkey) Self Potential Anomalies with Multilayer Perceptron Neural Networks

NASA Astrophysics Data System (ADS)

Kaftan, Ilknur; Sindirgi, Petek

2013-04-01

Self-potential (SP) is one of the oldest geophysical methods that provides important information about near-surface structures. Several methods have been developed to interpret SP data using simple geometries. This study investigated inverse solution of a buried, polarized sphere-shaped self-potential (SP ) anomaly via Multilayer Perceptron Neural Networks ( MLPNN ). The polarization angle ( α ) and depth to the centre of sphere ( h )were estimated. The MLPNN is applied to synthetic and field SP data. In order to see the capability of the method in detecting the number of sources, MLPNN was applied to different spherical models at different depths and locations.. Additionally, the performance of MLPNN was tested by adding random noise to the same synthetic test data. The sphere model successfully obtained similar parameters under different S/N ratios. Then, MLPNN method was applied to two field examples. The first one is the cross section taken from the SP anomaly map of the Ergani-Süleymanköy (Turkey) copper mine. MLPNN was also applied to SP data from Seferihisar Izmir (Western Turkey) geothermal field. The MLPNN results showed good agreement with the original synthetic data set. The effect of The technique gave satisfactory results following the addition of 5% and 10% Gaussian noise levels. The MLPNN results were compared to other SP interpretation techniques, such as Normalized Full Gradient (NFG), inverse solution and nomogram methods. All of the techniques showed strong similarity. Consequently, the synthetic and field applications of this study show that MLPNN provides reliable evaluation of the self potential data modelled by the sphere model.

Phylogenetic Analysis and Antimicrobial Profiles of Cultured Emerging Opportunistic Pathogens (Phyla Actinobacteria and Proteobacteria) Identified in Hot Springs

PubMed Central

Jardine, Jocelyn Leonie; Mavumengwana, Vuyo

2017-01-01

Hot spring water may harbour emerging waterborne opportunistic pathogens that can cause infections in humans. We have investigated the diversity and antimicrobial resistance of culturable emerging and opportunistic bacterial pathogens, in water and sediment of hot springs located in Limpopo, South Africa. Aerobic bacteria were cultured and identified using 16S ribosomal DNA (rDNA) gene sequencing. The presence of Legionella spp. was investigated using real-time polymerase chain reaction. Isolates were tested for resistance to ten antibiotics representing six different classes: β-lactam (carbenicillin), aminoglycosides (gentamycin, kanamycin, streptomycin), tetracycline, amphenicols (chloramphenicol, ceftriaxone), sulphonamides (co-trimoxazole) and quinolones (nalidixic acid, norfloxacin). Gram-positive Kocuria sp. and Arthrobacter sp. and gram-negative Cupriavidus sp., Ralstonia sp., Cronobacter sp., Tepidimonas sp., Hafnia sp. and Sphingomonas sp. were isolated, all recognised as emerging food-borne pathogens. Legionella spp. was not detected throughout the study. Isolates of Kocuria, Arthrobacter and Hafnia and an unknown species of the class Gammaproteobacteria were resistant to two antibiotics in different combinations of carbenicillin, ceftriaxone, nalidixic acid and chloramphenicol. Cronobacter sp. was sensitive to all ten antibiotics. This study suggests that hot springs are potential reservoirs for emerging opportunistic pathogens, including multiple antibiotic resistant strains, and highlights the presence of unknown populations of emerging and potential waterborne opportunistic pathogens in the environment. PMID:28914802

Surface self-potential patterns related to transmissive fracture trends during a water injection test

NASA Astrophysics Data System (ADS)

DesRoches, A. J.; Butler, K. E.; MacQuarrie, K. TB

2018-03-01

Variations in self-potential (SP) signals were recorded over an electrode array during a constant head injection test in a fractured bedrock aquifer. Water was injected into a 2.2 m interval isolated between two inflatable packers at 44 m depth in a vertical well. Negative SP responses were recorded on surface corresponding to the start of the injection period with strongest magnitudes recorded in electrodes nearest the well. SP response decreased in magnitude at electrodes further from the well. Deflation of the packer system resulted in a strong reversal in the SP signal. Anomalous SP patterns observed at surface at steady state were found to be aligned with dominant fracture strike orientations found within the test interval. Numerical modelling of fluid and current flow within a simplified fracture network showed that azimuthal patterns in SP are mainly controlled by transmissive fracture orientations. The strongest SP gradients occur parallel to hydraulic gradients associated with water flowing out of the transmissive fractures into the tighter matrix and other less permeable cross-cutting fractures. Sensitivity studies indicate that increasing fracture frequency near the well increases the SP magnitude and enhances the SP anomaly parallel to the transmissive set. Decreasing the length of the transmissive fractures leads to more fluid flow into the matrix and into cross-cutting fractures proximal to the well, resulting in a more circular and higher magnitude SP anomaly. Results from the field experiment and modelling provide evidence that surface-based SP monitoring during constant head injection tests has the ability to identify groundwater flow pathways within a fractured bedrock aquifer.

New Stream-reach Development: A Comprehensive Assessment of Hydropower Energy Potential in the United States

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kao, Shih-Chieh; McManamay, Ryan A; Stewart, Kevin M

2014-04-01

The rapid development of multiple national geospatial datasets related to topography, hydrology, and environmental characteristics in the past decade have provided new opportunities for the refinement of hydropower resource potential from undeveloped stream-reaches. Through 2011 to 2013, the Oak Ridge National Laboratory (ORNL) was tasked by the Department of Energy (DOE) Water Power Program to evaluate the new stream-reach development (NSD) resource potential for more than 3 million US streams. A methodology was designed that contains three main components: (1) identification of stream-reaches with high energy density, (2) topographical analysis of stream-reaches to estimate inundated surface area and reservoir storage,more » and (3) environmental attribution to spatially join information related to the natural ecological systems, social and cultural settings, policies, management, and legal constraints to stream-reaches of energy potential. An initial report on methodology (Hadjerioua et al., 2013) was later reviewed and revised based on the comments gathered from two peer review workshops. After implementing the assessment across the entire United States, major findings were summarized in this final report. The estimated NSD capacity and generation, including both higher-energy-density (>1 MW per reach) and lower-energy-density (<1 MW per reach) stream-reaches is 84.7 GW, around the same size as the existing US conventional hydropower nameplate capacity (79.5 GW; NHAAP, 2013). In terms of energy, the total undeveloped NSD generation is estimated to be 460 TWh/year, around 169% of average 2002 2011 net annual generation from existing conventional hydropower plants (272 TWh/year; EIA, 2013). Given the run-of-river assumption, NSD stream-reaches have higher capacity factors (53 71%), especially compared with conventional larger-storage peaking-operation projects that usually have capacity factors of around 30%. The highest potential is identified in the Pacific Northwest Region (32%), followed by Missouri Region (15%) and California Region (9%). In terms of states, the highest potential is found in Oregon, Washington, and Idaho, the three states in the Pacific Northwest, followed by California, Alaska, Montana, and Colorado. In addition to the resource potential, abundant environmental attributes were also organized and attributed to the identified stream-reaches to support further hydropower market analysis. The prevalence of environmental variables and proportion of capacity from stream-reaches intersecting environmental variables varied according to hydrologic region. Detailed NSD findings are organized by hydrologic regions and presented in each chapter of this report.« less

ASSESSING STREAM BED STABILITY AND EXCESS SEDIMENTATION IN MOUNTAIN STREAMS

EPA Science Inventory

Land use and resource exploitation in headwaters catchments?such as logging, mining, and road building?often increase sediment supply to streams, potentially causing excess sedimentation. Decreases in mean substrate size and increases in fine stream bed sediments can lead to inc...

Identifying dissolved oxygen variability and stress in tidal freshwater streams of northern New Zealand.

PubMed

Wilding, Thomas K; Brown, Edmund; Collier, Kevin J

2012-10-01

Tidal streams are ecologically important components of lotic network, and we identify dissolved oxygen (DO) depletion as a potentially important stressor in freshwater tidal streams of northern New Zealand. Other studies have examined temporal DO variability within rivers and we build on this by examining variability between streams as a basis for regional-scale predictors of risk for DO stress. Diel DO variability in these streams was driven by: (1) photosynthesis by aquatic plants and community respiration which produced DO maxima in the afternoon and minima early morning (range, 0.6-4.7 g/m(3)) as a product of the solar cycle and (2) tidal variability as a product of the lunar cycle, including saline intrusions with variable DO concentrations plus a small residual effect on freshwater DO for low-velocity streams. The lowest DO concentrations were observed during March (early autumn) when water temperatures and macrophyte biomass were high. Spatial comparisons indicated that low-gradient tidal streams were at greater risk of DO depletions harmful to aquatic life. Tidal influence was stronger in low-gradient streams, which typically drain more developed catchments, have lower reaeration potential and offer conditions more suitable for aquatic plant proliferation. Combined, these characteristics supported a simple method based on the extent of low-gradient channel for identifying coastal streams at risk of DO depletion. High-risk streams can then be targeted for riparian planting, nutrient limits and water allocation controls to reduce potential ecological stress.

Use of the Single Particle Soot Photometer (SP2) as a pre-filter for ice nucleation measurements: effect of particle mixing state and determination of SP2 conditions to fully vaporize refractory black carbon

NASA Astrophysics Data System (ADS)

Schill, Gregory P.; DeMott, Paul J.; Levin, Ezra J. T.; Kreidenweis, Sonia M.

2018-05-01

Ice nucleation is a fundamental atmospheric process that impacts precipitation, cloud lifetimes, and climate. Challenges remain to identify and quantify the compositions and sources of ice-nucleating particles (INPs). Assessment of the role of black carbon (BC) as an INP is particularly important due to its anthropogenic sources and abundance at upper-tropospheric cloud levels. The role of BC as an INP, however, is unclear. This is, in part, driven by a lack of techniques that directly determine the contribution of refractory BC (rBC) to INP concentrations. One previously developed technique to measure this contribution uses the Single Particle Soot Photometer (SP2) as a pre-filter to an online ice-nucleating particle counter. In this technique, rBC particles are selectively heated to their vaporization temperature in the SP2 cavity by a 1064 nm laser. From previous work, however, it is unclear under what SP2 conditions, if any, the original rBC particles were fully vaporized. Furthermore, previous work also left questions about the effect of the SP2 laser on the ice-nucleating properties of several INP proxies and their mixtures with rBC.To answer these questions, we sampled the exhaust of an SP2 with a Scanning Mobility Particle Sizer and a Continuous Flow Diffusion Chamber. Using Aquadag® as an rBC proxy, the effect of several SP2 instrument parameters on the size distribution and physical properties of particles in rBC SP2 exhaust were explored. We found that a high SP2 laser power (930 nW/(220 nm PSL)) is required to fully vaporize a ˜ 0.76 fg rBC particle. We also found that the exhaust particle size distribution is minimally affected by the SP2 sheath-to-sample ratio; the size of the original rBC particle, however, greatly influences the size distribution of the SP2 exhaust. The effect of the SP2 laser on the ice nucleation efficiency of Snomax®, NX-illite, and Suwannee River Fulvic Acid was studied; these particles acted as proxies for biological, illite-rich mineral dust, and brown carbon INPs, respectively. The original size distribution and ice nucleation efficiency of all non-rBC proxies were unaffected by the SP2 laser. Furthermore, the ice nucleation efficiencies of all proxies were not affected when externally mixed with rBC. These proxies, however, always show a reduction in ice-nucleating ability when internally mixed with rBC. We end this work with recommendations for users who wish to use the SP2 as a pre-filter to remove large rBC particles from an aerosol stream.

New Stream-reach Development (NSD): A Comprehensive Assessment of Hydropower Energy Potential in the United States Final Report

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kao, Shih-Chieh

2014-04-25

The U.S. Department of Energy (DOE) Water Power Program tasked Oak Ridge National Laboratory with evaluating the new stream-reach development (NSD) resource potential of more than 3 million U.S. streams in order to help individuals and organizations evaluate the feasibility of developing new hydropower sources in the United States.

Self-potential characteristics of the dormant period of Izu-Oshima volcano

NASA Astrophysics Data System (ADS)

Matsushima, Nobuo; Nishi, Yuji; Onizawa, Shin'ya; Takakura, Shinichi; Hase, Hideaki; Ishido, Tsuneo

2017-12-01

Continuous self-potential (SP) monitoring has been conducted at Izu-Oshima volcano to detect signals resulting from volcanic activity since the installation of an SP monitoring network in March 2006. Since the installation, annual variations of up to 100 mV have been recorded. If we exclude these annual variations, temporal variations in SP do not show notable changes. This is consistent with the volcano being in a state of quiescence during the measurement period. The annual variations have the different amplitudes and mean levels between stations. To investigate the causes of these annual variations, we carried out numerical simulations of SP generation associated with downward meteoric water flow through electrokinetic coupling in a 550 m thick unsaturated layer. The results show that the vertical electric potential gradient varies with changes in liquid-phase saturation in the unsaturated layer. These changes are caused by variations in the rate of meteoric water percolation. This, in turn, correlates with fluctuations in daily precipitation, thus explaining the annual SP variation recorded at the ground surface. Differences in the amplitude and mean level of SP variation are shown to be associated with different rock properties, especially permeability, porosity, and electrical conductivity. Our results indicate that observable SP changes will appear at stations near the summit if the distributions of liquid-phase saturation and/or pertinent parameters controlling the electrokinetic coupling in the thick unsaturated layer are modified the upward flow of volcanic gas.

Potential of Microbispora sp. V2 as biocontrol agent against Sclerotium rolfsii, the causative agent of southern blight of Zea mays L (Baby corn)--in vitro studies.

PubMed

Patil, N N; Waghmode, M S; Gaikwad, P S; Gajbhiye, M H; Gunjal, A B; Nawani, N N; Kapadnis, B P

2014-11-01

The study was undertaken with the aim of exploring novel and beneficial agro activities of rare actinomycetes like Microbispora sp. V2. The antagonistic activity of Microbispora sp. V2 was evaluated as a biocontrol agents against Sclerotium rolfsii, a soil-borne fungal plant pathogen. The methodology performed for evaluation of biocontrol agent was in vitro evaluation assay which comprised of three tests viz., cellophane overlay technique, seed germination test and Thiram (fungicide) tolerance of Microbispora sp. V2. The isolate was found to inhibit the fungal pathogen Sclerotium rolfsii to 91.43% in cellophane assay. In seed germination assay, Microbispora sp. V2 treated seeds resulted in 25.75% increased germination efficiency, as compared to seeds infected by Sclerotium rolfsii. The isolate Microbispora sp. V2 could tolerate 1000 microg mL(-1) of Thiram (fungicide). The in vitro assay studies proved that Microbispora sp. V2 can be used as antifungal antagonist and thus posses' great potential as biocontrol agent against southern blight caused by Sclerotium rolfsii in Zea mays L (Baby corn) which causes large economical losses.

Hydrologic landscape regions for predicting and generalizing the refuge function of intermittent and ephemeral streams

EPA Science Inventory

Intermittent and ephemeral (IE) streams can provide important functions within stream networks. Understanding the relative benefit provided to downstream waters is needed to better inform watershed management. Although the potential functions of IE streams are relatively well kn...

A superhard sp3 microporous carbon with direct bandgap

NASA Astrophysics Data System (ADS)

Pan, Yilong; Xie, Chenlong; Xiong, Mei; Ma, Mengdong; Liu, Lingyu; Li, Zihe; Zhang, Shuangshuang; Gao, Guoying; Zhao, Zhisheng; Tian, Yongjun; Xu, Bo; He, Julong

2017-12-01

Carbon allotropes with distinct sp, sp2, and sp3 hybridization possess various different properties. Here, a novel all-sp3 hybridized tetragonal carbon, namely the P carbon, was predicted by the evolutionary particle swarm structural search. It demonstrated a low density among all-sp3 carbons, due to the corresponding distinctive microporous structure. P carbon is thermodynamically stable than the known C60 and could be formed through the single-walled carbon nanotubes (SWCNTs) compression. P carbon is a direct bandgap semiconductor displaying a strong and superhard nature. The unique combination of electrical and mechanical properties constitutes P carbon a potential superhard material for semiconductor industrial fields.

A new species of poison-dart frog (Anura: Dendrobatidae) from Manu province, Amazon region of southeastern Peru, with notes on its natural history, bioacoustics, phylogenetics, and recommended conservation status.

PubMed

Serrano-Rojas, Shirley J; Whitworth, Andrew; Villacampa, Jaime; May, Rudolf VON; Gutiérrez, Roberto C; Padial, José M; Chaparro, Juan C

2017-01-16

We describe and name a new species of poison-dart frog from the Amazonian slopes of the Andes in Manu Province, Madre de Dios Department, Peru; specifically within the Amarakaeri Communal Reserve and the buffer zone of Manu National Park. Ameerega shihuemoy sp. nov. is supported by a unique combination of characters: black dorsum with cream to light orange dorsolateral lines, blue belly reticulated with black, and the lack of axillary, thigh and calf flash marks. Within Ameerega, it shares the general appearance of A. altamazonica, A. boliviana, A. hahneli, A. ignipedis, A. petersi, A. picta, A. pongoensis, A. pulchripecta, A. simulans, A. smaragdina, and A. yungicola; each possessing a granular black to brown dorsum, a light labial bar, a conspicuous dorsolateral line running from the snout to the groin, and a metallic blue belly and underside of arms and hind limbs. From most of these species it can be distinguished by lacking flash marks on the axillae, thighs, and calves (absent in only A. boliviana and A. smaragdina, most A. petersi, and some A. pongoensis), by having bright cream to orange dorsolateral stripes (white, intense yellow, or green in all other species, with the exception of A. picta), and by its blue belly reticulated with black (bluish white and black in A. boliviana, green and blue with black marbling in A. petersi, and green and blue lacking black marbling in A. smaragdina). Its mating call also shows clear differences to morphologically similar species, with a lower note repetition rate, longer space between calls, and higher fundamental and dominant frequencies. Phylogenetic analyses based on the 16S mitochondrial rRNA fragment also support the distinctiveness of the new species and suggest that A. shihuemoy is most closely related to Ameerega macero, A. altamazonica, A. rubriventris, and two undescribed species (Ameerega sp. from Porto Walter, Acre, Brazil, and Ameerega sp. from Ivochote, Cusco, Peru). Genetically, the new species is most similar to the sympatric A. macero, from which it clearly differs in characteristics of its advertisement call and coloration. The new species is found near rocky streams during the dry season and near temporary water bodies during the rainy season. Tadpoles are found in lentic water along streams, or in shallow, slow-moving streams. Given its small geographic range, we recommend that A. shihuemoy should be considered 'Near threatened' (NT) according to IUCN Red List criteria.

Isolation and characterization of Bacteroides host strain HB-73 used to detect sewage specific phages in Hawaii.

PubMed

Vijayavel, Kannappan; Fujioka, Roger; Ebdon, James; Taylor, Huw

2010-06-01

Previous studies have shown that Escherichia coli and enterococci are unreliable indicators of fecal contamination in Hawaii because of their ability to multiply in environmental soils. In this study, the method of detecting Bacteroides phages as specific markers of sewage contamination in Hawaii's recreational waters was evaluated because these sewage specific phages cannot multiply under environmental conditions. Bacteroides hosts (GB-124, GA-17), were recovered from sewage samples in Europe and were reported to be effective in detecting phages from sewage samples obtained in certain geographical areas. However, GB-124 and GA-17 hosts were ineffective in detecting phages from sewage samples obtained in Hawaii. Bacteroides host HB-73 was isolated from a sewage sample in Hawaii, confirmed as a Bacteroides sp. and shown to recover phages from multiple sources of sewage produced in Hawaii at high concentrations (5.2-7.3 x 10(5) PFU/100 mL). These Bacteroides phages were considered as potential markers of sewage because they also survived for three days in fresh stream water and two days in marine water. Water samples from Hawaii's coastal swimming beaches and harbors, which were known to be contaminated with discharges from streams, were shown to contain moderate (20-187 CFU/100 mL) to elevated (173-816 CFU/100 mL) concentrations of enterococci. These same samples contained undetectable levels (<10 PFU/100 mL) of F+ coliphage and Bacteroides phages and provided evidence to suggest that these enterococci may not necessarily be associated with the presence of raw sewage. These results support previous conclusions that discharges from streams are the major sources of enterococci in coastal waters of Hawaii and the most likely source of these enterococci is from environmental soil rather than from sewage. 2010 Elsevier Ltd. All rights reserved.

Effects of physical and biogeochemical processes on aquatic ecosystems at the groundwater-surface water interface: An evaluation of a sulfate-impacted wild rice stream in Minnesota (USA)

NASA Astrophysics Data System (ADS)

Ng, G. H. C.; Yourd, A. R.; Myrbo, A.; Johnson, N.

2015-12-01

Significant uncertainty and variability in physical and biogeochemical processes at the groundwater-surface water interface complicate how surface water chemistry affects aquatic ecosystems. Questions surrounding a unique 10 mg/L sulfate standard for wild rice (Zizania sp.) waters in Minnesota are driving research to clarify conditions controlling the geochemistry of shallow sediment porewater in stream- and lake-beds. This issue raises the need and opportunity to carry out in-depth, process-based analysis into how water fluxes and coupled C, S, and Fe redox cycles interact to impact aquatic plants. Our study builds on a recent state-wide field campaign that showed that accumulation of porewater sulfide from sulfate reduction impairs wild rice, an annual grass that grows in shallow lakes and streams in the Great Lakes region of North America. Negative porewater sulfide correlations with organic C and Fe quantities also indicated that lower redox rates and greater mineral precipitation attenuate sulfide. Here, we focus on a stream in northern Minnesota that receives high sulfate loading from iron mining activity yet maintains wild rice stands. In addition to organic C and Fe effects, we evaluate the degree to which streambed hydrology, and in particular groundwater contributions, accounts for the active biogeochemistry. We collect field measurements, spanning the surrounding groundwater system to the stream, to constrain a reactive-transport model. Observations from seepage meters, temperature probes, and monitoring wells delineate upward flow that may lessen surface water impacts below the stream. Geochemical analyses of groundwater, porewater, and surface water samples and of sediment extractions reveal distinctions among the different domains and stream banks, which appear to jointly control conditions in the streambed. A model based on field conditions can be used to evaluate the relative the importance and the spatiotemporal scales of diverse flux and geochemical factors affecting aquatic root zones.

Studies on the interference of wings and propeller slipstreams

NASA Technical Reports Server (NTRS)

Prabhu, R. K.; Tiwari, S. N.

1985-01-01

The small disturbance potential flow theory is applied to determine the lift of an airfoil in a nonuniform parallel stream. The given stream is replaced by an equivalent stream with a certain number of velocity discontinuities, and the influence of these discontinuities is obtained by the method of images. Next, this method is extended to the problem of an airfoil in a nonuniform stream of smooth velocity profile. This model allows perturbation velocity potential in a rotational undisturbed stream. A comparison of these results with numerical solutions of Euler equations indicates that, although approximate, the present method provides useful information about the interaction problem while avoiding the need to solve the Euler equations.

Streaming Potential In Rocks Saturated With Water And Oil

NASA Astrophysics Data System (ADS)

Tarvin, J. A.; Caston, A.

2011-12-01

Fluids flowing through porous media generate electrical currents. These currents cause electric potentials, called "streaming potentials." Streaming potential amplitude depends on the applied pressure gradient, on rock and fluid properties, and on the interaction between rock and fluid. Streaming potential has been measured for rocks saturated with water (1) and with water-gas mixtures. (2) Few measurements (3) have been reported for rocks saturated with water-oil mixtures. We measured streaming potential for sandstone and limestone saturated with a mixture of brine and laboratory oil. Cylindrical samples were initially saturated with brine and submerged in oil. Saturation was changed by pumping oil from one end of a sample to the other and then through the sample in the opposite direction. Saturation was estimated from sample resistivity. The final saturation of each sample was determined by heating the sample in a closed container and measuring the pressure. Measurements were made by modulating the pressure difference (of oil) between the ends of a sample at multiple frequencies below 20 Hz. The observed streaming potential is a weak function of the saturation. Since sample conductivity decreases with increasing oil saturation, the electro-kinetic coupling coefficient (Pride's L (4)) decreases with increasing oil saturation. (1) David B. Pengra and Po-zen Wong, Colloids and Surfaces, vol., p. 159 283-292 (1999). (2) Eve S. Sprunt, Tony B. Mercer, and Nizar F. Djabbarah, Geophysics, vol. 59, p. 707-711 (1994). (3) Vinogradov, J., Jackson, M.D., Geophysical Res. L., Vol. 38, Article L01301 (2011). (4) Steve Pride, Phys. Rev. B, vol. 50, pp. 15678-15696 (1994).

Leaf litter processing in West Virginia mountain streams: effects of temperature and stream chemistry

Treesearch

Jacquelyn M. Rowe; William B. Perry; Sue A. Perry

1996-01-01

Climate change has the potential to alter detrital processing in headwater streams, which receive the majority of their nutrient input as terrestrial leaf litter. Early placement of experimental leaf packs in streams, one month prior to most abscission, was used as an experimental manipulation to increase stream temperature during leaf pack breakdown. We studied leaf...

Assessment of tolerant sunfish populations (Lepomis sp.) inhabiting selenium-laden coal ash effluents. 3. Serum chemistry and fish health indicators.

PubMed

Lohner, T W; Reash, R J; Willet, V E; Fletcher, J

2001-11-01

Sunfish were collected from fly ash discharge-receiving streams to assess the possible effects of exposure to elevated selenium. Concentrations of selenium, copper, and arsenic were statistically higher in fish tissue (liver) samples from effluent-exposed fish than in reference fish. Several biomarkers were indicative of metal exposure and effect. Plasma protein levels and cholesterol levels were significantly lower in exposed fish, indicating nutritional stress. Ion levels (i.e., K) increased with exposure to ash pond metals, indicating possible gill damage. Fish from the receiving streams also had increased serum glucose and osmolality indicating possible acute stress due to sampling. Fish health assessments revealed a lower incidence of fin erosion, kidney discoloration, urolithiasis or nephrocalcinosis, liver discoloration, and parasites in exposed fish and a higher incidence of skin, eye, and gill aberrations. Condition factors of exposed fish were correlated with biomarker response and were the same as or lower than those of reference fish, but not related to selenium levels. Although several serum biochemical indicators differed between the ash pond-receiving stream and reference sites, pollutant exposure was apparently not sufficient to cause functional damage to critical organ systems.

A modeling assessment of the thermal regime for an urban sport fishery

USGS Publications Warehouse

Bartholow, John M.

1991-01-01

Water temperature is almost certainly a limiting factor in the maintenance of a self-sustaining rainbow trout (Oncorhynchus mykiss, formerly Salmo gairdneri) and brown trout (Salmo trutta) fishery in the lower reaches of the Cache la Poudre River near Fort Collins, Colorado, USA. Irrigation diversions dewater portions of the river, but cold reservoir releases moderate water temperatures during some periods. The US Fish and Wildlife Service’s Stream Network Temperature Model (SNTEMP) was applied to a 31-km segment of the river using readily available stream geometry and hydrological and meteorological data. The calibrated model produced satisfactory water temperature predictions (R2=0.88,P3/sec would be needed to maintain suitable summer temperatures throughout most of the study area. Such flows would be especially beneficial during weekends when current irrigation patterns reduce flows. The model indicated that increasing the riparian shade would result in little improvement in water temperatures but that decreasing the stream width would result in significant temperature reductions. Introduction of a more thermally tolerant redband trout (Oncorhynchus sp.), or smallmouth bass (Micropterus dolomieui) might prove beneficial to the fishery. Construction of deep pools for thermal refugia might also be helpful.

Modeling intrinsic potential for beaver (Castor canadensis) habitat to inform restoration and climate change adaptation

PubMed Central

Pollock, Michael M.; Schilling, Jason W.; Olden, Julian D.; Lawler, Joshua J.; Torgersen, Christian E.

2018-01-01

Through their dam-building activities and subsequent water storage, beaver have the potential to restore riparian ecosystems and offset some of the predicted effects of climate change by modulating streamflow. Thus, it is not surprising that reintroducing beaver to watersheds from which they have been extirpated is an often-used restoration and climate-adaptation strategy. Identifying sites for reintroduction, however, requires detailed information about habitat factors—information that is not often available at broad spatial scales. Here we explore the potential for beaver relocation throughout the Snohomish River Basin in Washington, USA with a model that identifies some of the basic building blocks of beaver habitat suitability and does so by relying solely on remotely sensed data. More specifically, we developed a generalized intrinsic potential model that draws on remotely sensed measures of stream gradient, stream width, and valley width to identify where beaver could become established if suitable vegetation were to be present. Thus, the model serves as a preliminary screening tool that can be applied over relatively large extents. We applied the model to 5,019 stream km and assessed the ability of the model to correctly predict beaver habitat by surveying for beavers in 352 stream reaches. To further assess the potential for relocation, we assessed land ownership, use, and land cover in the landscape surrounding stream reaches with varying levels of intrinsic potential. Model results showed that 33% of streams had moderate or high intrinsic potential for beaver habitat. We found that no site that was classified as having low intrinsic potential had any sign of beavers and that beaver were absent from nearly three quarters of potentially suitable sites, indicating that there are factors preventing the local population from occupying these areas. Of the riparian areas around streams with high intrinsic potential for beaver, 38% are on public lands and 17% are on large tracts of privately-owned timber land. Thus, although there are a large number of areas that could be suitable for relocation and restoration using beavers, current land use patterns may substantially limit feasibility in these areas. PMID:29489853

Modeling intrinsic potential for beaver (Castor canadensis) habitat to inform restoration and climate change adaptation

USGS Publications Warehouse

Dittbrenner, Benjamin J.; Pollack, Michael M.; Schilling, Jason W.; Olden, Julian D.; Lawler, Joshua J.; Torgersen, Christian E.

2018-01-01

Through their dam-building activities and subsequent water storage, beaver have the potential to restore riparian ecosystems and offset some of the predicted effects of climate change by modulating streamflow. Thus, it is not surprising that reintroducing beaver to watersheds from which they have been extirpated is an often-used restoration and climate-adaptation strategy. Identifying sites for reintroduction, however, requires detailed information about habitat factors—information that is not often available at broad spatial scales. Here we explore the potential for beaver relocation throughout the Snohomish River Basin in Washington, USA with a model that identifies some of the basic building blocks of beaver habitat suitability and does so by relying solely on remotely sensed data. More specifically, we developed a generalized intrinsic potential model that draws on remotely sensed measures of stream gradient, stream width, and valley width to identify where beaver could become established if suitable vegetation were to be present. Thus, the model serves as a preliminary screening tool that can be applied over relatively large extents. We applied the model to 5,019 stream km and assessed the ability of the model to correctly predict beaver habitat by surveying for beavers in 352 stream reaches. To further assess the potential for relocation, we assessed land ownership, use, and land cover in the landscape surrounding stream reaches with varying levels of intrinsic potential. Model results showed that 33% of streams had moderate or high intrinsic potential for beaver habitat. We found that no site that was classified as having low intrinsic potential had any sign of beavers and that beaver were absent from nearly three quarters of potentially suitable sites, indicating that there are factors preventing the local population from occupying these areas. Of the riparian areas around streams with high intrinsic potential for beaver, 38% are on public lands and 17% are on large tracts of privately-owned timber land. Thus, although there are a large number of areas that could be suitable for relocation and restoration using beavers, current land use patterns may substantially limit feasibility in these areas.

Modeling intrinsic potential for beaver (Castor canadensis) habitat to inform restoration and climate change adaptation.

PubMed

Dittbrenner, Benjamin J; Pollock, Michael M; Schilling, Jason W; Olden, Julian D; Lawler, Joshua J; Torgersen, Christian E

2018-01-01

Through their dam-building activities and subsequent water storage, beaver have the potential to restore riparian ecosystems and offset some of the predicted effects of climate change by modulating streamflow. Thus, it is not surprising that reintroducing beaver to watersheds from which they have been extirpated is an often-used restoration and climate-adaptation strategy. Identifying sites for reintroduction, however, requires detailed information about habitat factors-information that is not often available at broad spatial scales. Here we explore the potential for beaver relocation throughout the Snohomish River Basin in Washington, USA with a model that identifies some of the basic building blocks of beaver habitat suitability and does so by relying solely on remotely sensed data. More specifically, we developed a generalized intrinsic potential model that draws on remotely sensed measures of stream gradient, stream width, and valley width to identify where beaver could become established if suitable vegetation were to be present. Thus, the model serves as a preliminary screening tool that can be applied over relatively large extents. We applied the model to 5,019 stream km and assessed the ability of the model to correctly predict beaver habitat by surveying for beavers in 352 stream reaches. To further assess the potential for relocation, we assessed land ownership, use, and land cover in the landscape surrounding stream reaches with varying levels of intrinsic potential. Model results showed that 33% of streams had moderate or high intrinsic potential for beaver habitat. We found that no site that was classified as having low intrinsic potential had any sign of beavers and that beaver were absent from nearly three quarters of potentially suitable sites, indicating that there are factors preventing the local population from occupying these areas. Of the riparian areas around streams with high intrinsic potential for beaver, 38% are on public lands and 17% are on large tracts of privately-owned timber land. Thus, although there are a large number of areas that could be suitable for relocation and restoration using beavers, current land use patterns may substantially limit feasibility in these areas.

Practical procedure for discriminating monofloral honey with a broad pollen profile variability using an electronic tongue.

PubMed

Sousa, Mara E B C; Dias, Luís G; Veloso, Ana C A; Estevinho, Letícia; Peres, António M; Machado, Adélio A S C

2014-10-01

Colour and floral origin are key parameters that may influence the honey market. Monofloral light honey are more demanded by consumers, mainly due to their flavour, being more valuable for producers due to their higher price when compared to darker honey. The latter usually have a high anti-oxidant content that increases their healthy potential. This work showed that it is possible to correctly classify monofloral honey with a high variability in floral origin with a potentiometric electronic tongue after making a preliminary selection of honey according their colours: white, amber and dark honey. The results showed that the device had a very satisfactory sensitivity towards floral origin (Castanea sp., Echium sp., Erica sp., Lavandula sp., Prunus sp. and Rubus sp.), allowing a leave-one-out cross validation correct classification of 100%. Therefore, the E-tongue shows potential to be used at analytical laboratory level for honey samples classification according to market and quality parameters, as a practical tool for ensuring monofloral honey authenticity. Copyright © 2014 Elsevier B.V. All rights reserved.

Improved breast cancer cell-specific intracellular drug delivery and therapeutic efficacy by coupling decoration with cell penetrating peptide and SP90 peptide.

PubMed

Fan, Li-Qiang; Du, Guo-Xiu; Li, Peng-Fei; Li, Ming-Wei; Sun, Yao; Zhao, Li-Ming

2016-12-01

Lack of satisfactory specificity towards tumor cells and poor intracellular delivery efficacy are the major drawbacks with conventional cancer chemotherapy. Conjugated anticancer drugs to targeting moieties e.g. to peptides with the ability to recognize cancer cells and to cell penetrating peptide can improve these characteristics, respectively. Combining a tumor homing peptide with an appropriate cell-penetrating peptide can enhance the tumor-selective internalization efficacy of the carrying cargo molecules. In the present study, the breast cancer homing ability of SP90 peptide and the synergistic effect of SP90 with a cell-penetrating peptide(C peptide) were evaluated. SP90 and chimeric peptide SP90-C specifically targeted cargo molecule into breast cancer cells, especially triple negative MDA-MB-231 cell, in a dose- and time-dependent manner, but not normal breast cells and other cancer cells, while C peptide alone had no cell-selectivity. SP90-C increased the intracellular delivery efficiency by 12-fold or 10-fold compared to SP90 or C peptide alone, respectively. SP90 and SP90-C conjugation increased the anti-proliferative and apoptosis-inducing activity of HIV-1 Vpr, a potential novel anticancer protein drug, to breast cancer cell but not normal breast cell by arresting cells in G2/M phase. With excellent breast cancer cell-selective penetrating efficacy, SP90-C appears as a promising candidate vector for targeted anti-cancer drug delivery. SP90-VPR-C is a potential novel breast cancer-targeted anticancer agent for its high anti-tumor activity and low toxicity. Copyright © 2016 Elsevier Masson SAS. All rights reserved.

In Situ Blood Vessel Regeneration Using SP (Substance P) and SDF (Stromal Cell-Derived Factor)-1α Peptide Eluting Vascular Grafts.

PubMed

Shafiq, Muhammad; Zhang, Qiuying; Zhi, Dengke; Wang, Kai; Kong, Deling; Kim, Dong-Hwee; Kim, Soo Hyun

2018-05-31

The objective of this study was to develop small-diameter vascular grafts capable of eluting SDF (stromal cell-derived factor)-1α-derived peptide and SP (substance P) for in situ vascular regeneration. Polycaprolactone (PCL)/collagen grafts containing SP or SDF-1α-derived peptide were fabricated by electrospinning. SP and SDF-1α peptide-loaded grafts recruited significantly higher mesenchymal stem cells than that of the control group. The in vivo potential of PCL/collagen, SDF-1, and SP grafts was assessed by implanting them in a rat abdominal aorta for up to 4 weeks. All grafts remained patent as observed using color Doppler and stereomicroscope. Host cells infiltrated into the graft wall and the neointima was formed in peptides-eluting grafts. The lumen of the SP grafts was covered by the endothelial cells with cobblestone-like morphology, which were elongated in the direction of the blood flow, as discerned using scanning electron microscopy. Moreover, SDF-1α and SP grafts led to the formation of a confluent endothelium as evaluated using immunofluorescence staining with von Willebrand factor antibody. SP and SDF-1α grafts also promoted smooth muscle cell regeneration, endogenous stem cell recruitment, and blood vessel formation, which was the most prominent in the SP grafts. Evaluation of inflammatory response showed that 3 groups did not significantly differ in terms of the numbers of proinflammatory macrophages, whereas SP grafts showed significantly higher numbers of proremodeling macrophages than that of the control and SDF-1α grafts. SDF-1α and SP grafts can be potential candidates for in situ vascular regeneration and are worthy for future investigations. © 2018 American Heart Association, Inc.

Differential Response of Potato Toward Inoculation with Taxonomically Diverse Plant Growth Promoting Rhizobacteria.

PubMed

Naqqash, Tahir; Hameed, Sohail; Imran, Asma; Hanif, Muhammad Kashif; Majeed, Afshan; van Elsas, Jan Dirk

2016-01-01

Rhizosphere engineering with beneficial plant growth promoting bacteria offers great promise for sustainable crop yield. Potato is an important food commodity that needs large inputs of nitrogen and phosphorus fertilizers. To overcome high fertilizer demand (especially nitrogen), five bacteria, i.e., Azospirillum sp. TN10, Agrobacterium sp. TN14, Pseudomonas sp. TN36, Enterobacter sp. TN38 and Rhizobium sp. TN42 were isolated from the potato rhizosphere on nitrogen-free malate medium and identified based on their 16S rRNA gene sequences. Three strains, i.e., TN10, TN38, and TN42 showed nitrogen fixation (92.67-134.54 nmol h(-1)mg(-1) protein), while all showed the production of indole-3-acetic acid (IAA), which was significantly increased by the addition of L-tryptophan. Azospirillum sp. TN10 produced the highest amount of IAA, as measured by spectrophotometry (312.14 μg mL(-1)) and HPLC (18.3 μg mL(-1)). Inoculation with these bacteria under axenic conditions resulted in differential growth responses of potato. Azospirillum sp. TN10 incited the highest increase in potato fresh and dry weight over control plants, along with increased N contents of shoot and roots. All strains were able to colonize and maintain their population densities in the potato rhizosphere for up to 60 days, with Azospirillum sp. and Rhizobium sp. showing the highest survival. Plant root colonization potential was analyzed by transmission electron microscopy of root sections inoculated with Azospirillum sp. TN10. Of the five test strains, Azospirillum sp. TN10 has the greatest potential to increase the growth and nitrogen uptake of potato. Hence, it is suggested as a good candidate for the production of potato biofertilizer for integrated nutrient management.

Endometrial Cancer Side-Population Cells Show Prominent Migration and Have a Potential to Differentiate into the Mesenchymal Cell Lineage

PubMed Central

Kato, Kiyoko; Takao, Tomoka; Kuboyama, Ayumi; Tanaka, Yoshihiro; Ohgami, Tatsuhiro; Yamaguchi, Shinichiro; Adachi, Sawako; Yoneda, Tomoko; Ueoka, Yousuke; Kato, Keiji; Hayashi, Shinichi; Asanoma, Kazuo; Wake, Norio

2010-01-01

Cancer stem-like cell subpopulations, referred to as “side-population” (SP) cells, have been identified in several tumors based on their ability to efflux the fluorescent dye Hoechst 33342. Although SP cells have been identified in the normal human endometrium and endometrial cancer, little is known about their characteristics. In this study, we isolated and characterized the SP cells in human endometrial cancer cells and in rat endometrial cells expressing oncogenic human K-Ras protein. These SP cells showed i) reduction in the expression levels of differentiation markers; ii) long-term proliferative capacity of the cell cultures; iii) self-renewal capacity in vitro; iv) enhancement of migration, lamellipodia, and, uropodia formation; and v) enhanced tumorigenicity. In nude mice, SP cells formed large, invasive tumors, which were composed of both tumor cells and stromal-like cells with enriched extracellular matrix. The expression levels of vimentin, α-smooth muscle actin, and collagen III were enhanced in SP tumors compared with the levels in non-SP tumors. In addition, analysis of microdissected samples and fluorescence in situ hybridization of Hec1-SP-tumors showed that the stromal-like cells with enriched extracellular matrix contained human DNA, confirming that the stromal-like cells were derived from the inoculated cells. Moreober, in a Matrigel assay, SP cells differentiated into α-smooth muscle actin-expressing cells. These findings demonstrate that SP cells have cancer stem-like cell features, including the potential to differentiate into the mesenchymal cell lineage. PMID:20008133

Increased Liposome Extravasation in Selected Tissues: Effect of Substance P

NASA Astrophysics Data System (ADS)

Rosenecker, Joseph; Zhang, Weiming; Hong, Keelung; Lausier, James; Geppetti, Pierangelo; Yoshihara, Shigemi; Papahadjopoulos, Demetrios; Nadel, Jay A.

1996-07-01

We have used a pharmacologic mediator to open intercellular connections in selected vessels to allow liposomes to escape from the blood stream and to extravasate into tissues that have appropriate receptors. We have examined the effects of substance P (SP), a peptide known to increase vascular permeability in selected tissues, such as trachea, esophagus, and urinary bladder in rats. We used quantitative fluorescence analysis of tissues to measure two fluorescent markers, one attached to the lipid (rhodamine-phosphatidylethanolamine) and another, doxorubicin (an antitumor drug), encapsulated within the aqueous interior. We have also examined the deposition of liposomes microscopically by the use of encapsulated colloidal gold and silver enhancement. Analysis of the biochemical and morphological observations indicate the following: (i) Injection of SP produces a striking increase in both liposome labels, but only in tissues that possess receptors for SP in postcapillary venules; (ii) liposome material in these tissues has extravasated and is found extracellularly near a variety of cells beyond the endothelial layer over the first few hours; (iii) 24 h following injection of liposomes and SP, liposome material is found in these tissues, localized intracellularly in both endothelial cells and macrophages. We propose that appropriate application of tissue-specific mediators can result in liposome extravasation deep within tissues that normally do not take up significant amounts of liposomes from the blood. Such liposomes are able to carry a variety of pharmacological agents that can be released locally within selected target tissues for therapeutic purposes.

Characterizing the surface charge of synthetic nanomembranes by the streaming potential method

PubMed Central

Datta, Subhra; Conlisk, A. T.; Kanani, Dharmesh M.; Zydney, Andrew L.; Fissell, William H.; Roy, Shuvo

2010-01-01

The inference of the surface charge of polyethylene glycol (PEG)-coated and uncoated silicon membranes with nanoscale pore sizes from streaming potential measurements in the presence of finite electric double layer (EDL) effects is studied theoretically and experimentally. The developed theoretical model for inferring the pore wall surface charge density from streaming potential measurements is applicable to arbitrary pore cross-sectional shapes and accounts for the effect of finite salt concentration on the ionic mobilities and the thickness of the deposited layer of PEG. Theoretical interpretation of the streaming potential data collected from silicon membranes having nanoscale pore sizes, with/without pore wall surface modification with PEG, indicates that finite electric double layer (EDL) effects in the pore-confined electrolyte significantly affect the interpretation of the membrane charge and that surface modification with PEG leads to a reduction in the pore wall surface charge density. The theoretical model is also used to study the relative significance of the following uniquely nanoscale factors affecting the interpretation of streaming potential in moderate to strongly charged pores: altered net charge convection by applied pressure differentials, surface-charge effects on ionic conduction, and electroosmotic convection of charges. PMID:20462592

Climate-induced seasonal changes in smallmouth bass growth rate potential at the southern range extent

USGS Publications Warehouse

Middaugh, Christopher R.; Kessinger, Brin; Magoulick, Daniel D.

2018-01-01

Temperature increases due to climate change over the coming century will likely affect smallmouth bass (Micropterus dolomieu) growth in lotic systems at the southern extent of their native range. However, the thermal response of a stream to warming climate conditions could be affected by the flow regime of each stream, mitigating the effects on smallmouth bass populations. We developed bioenergetics models to compare change in smallmouth bass growth rate potential (GRP) from present to future projected monthly stream temperatures across two flow regimes: runoff and groundwater-dominated. Seasonal differences in GRP between stream types were then compared. The models were developed for fourteen streams within the Ozark–Ouachita Interior Highlands in Arkansas, Oklahoma and Missouri, USA, which contain smallmouth bass. In our simulations, smallmouth bass mean GRP during summer months decreased by 0.005 g g−1 day−1 in runoff streams and 0.002 g g−1 day−1 in groundwater streams by the end of century. Mean GRP during winter, fall and early spring increased under future climate conditions within both stream types (e.g., 0.00019 g g−1 day−1 in runoff and 0.0014 g g−1 day−1 in groundwater streams in spring months). We found significant differences in change in GRP between runoff and groundwater streams in three seasons in end-of-century simulations (spring, summer and fall). Potential differences in stream temperature across flow regimes could be an important habitat component to consider when investigating effects of climate change as fishes from various flow regimes that are relatively close geographically could be affected differently by warming climate conditions.

Quality improvement on half-fin anchovy (Setipinna taty) fish sauce by Psychrobacter sp. SP-1 fermentation.

PubMed

Zheng, Bin; Liu, Yu; He, Xiaoxia; Hu, Shiwei; Li, Shijie; Chen, Meiling; Jiang, Wei

2017-10-01

A method of improving fish sauce quality during fermentation was investigated. Psychrobacter sp. SP-1, a halophilic protease-producing bacterium, was isolated from fish sauce with flavor-enhancing properties and non-biogenic amine-producing activity. The performance of Psychrobacter sp. SP-1 in Setipinna taty fish sauce fermentation was investigated further. The inoculation of Psychrobacter sp. SP-1 did not significantly affect pH or NaCl concentration changes (P > 0.05), although it significantly increased total moderately halophilic microbial count, protease activity, total soluble nitrogen content and amino acid nitrogen content, and also promoted the umami taste and meaty aroma (P < 0.05). Furthermore, the inoculation of Psychrobacter sp. SP-1 significantly decreased total volatile basic nitrogen content and biogenic amines content (P < 0.05), which were regarded as harmful compounds in foods. The results of the present study demonstrate that Psychrobacter sp. SP-1 can be used as a potential starter culture for improving fish sauce quality by fermentation. © 2017 Society of Chemical Industry. © 2017 Society of Chemical Industry.

Diversity and persistence of ectomycorrhizal fungi and their effect on nursery-inoculated Pinus pinaster in a post-fire plantation in Northern Portugal.

PubMed

Franco, Albina R; Sousa, Nadine R; Ramos, Miguel A; Oliveira, Rui S; Castro, Paula M L

2014-11-01

Ectomycorrhizal fungi (ECMF) play an important role in forest ecosystems, often mitigating stress factors and increasing seedling performance. The aim of this study was to investigate the effects of a nursery inoculation on Pinus pinaster growth and on the fungal communities established when reforesting burned areas. Inoculated P. pinaster saplings showed 1.5-fold higher stem height than the non-inoculated controls after a 5 year growth period, suggesting that fungal inoculation could potentiate tree growth in the field. Ordination analysis revealed the presence of different ECMF communities on both plots. Among the nursery-inoculated fungi, Laccaria sp., Rhizopogon sp., Suillus bovinus and Pisolithus sp. were detected on inoculated Pinus saplings on both sampling periods, indicating that they persisted after field establishment. Other fungi were also detected in the inoculated plants. Phialocephala sp. was found on the first assessment, while Terfezia sp. was detected on both sampling periods. Laccaria sp. and Rhizopogon sp. were identified in the control saplings, belonging however to different species than those found in the inoculated plot. Inocybe sp., Thelephora sp. and Paxillus involutus were present on both sampling periods in the non-inoculated plots. The results suggest that ECMF inoculation at nursery stage can benefit plant growth after transplantation to a post-fire site and that the inoculated fungi can persist in the field. This approach has great potential as a biotechnological tool to aid in the reforestation of burned areas.

Endophytes from medicinal plants and their potential for producing indole acetic acid, improving seed germination and mitigating oxidative stress* #

PubMed Central

Khan, Abdul Latif; Gilani, Syed Abdullah; Waqas, Muhammad; Al-Hosni, Khadija; Al-Khiziri, Salima; Kim, Yoon-Ha; Ali, Liaqat; Kang, Sang-Mo; Asaf, Sajjad; Shahzad, Raheem; Hussain, Javid; Lee, In-Jung; Al-Harrasi, Ahmed

2017-01-01

Medicinal plants have been used by marginal communities to treat various ailments. However, the potential of endophytes within these bio-prospective medicinal plants remains unknown. The present study elucidates the endophytic diversity of medicinal plants (Caralluma acutangula, Rhazya stricta, and Moringa peregrina) and the endophyte role in seed growth and oxidative stress. Various organs of medicinal plants yielded ten endophytes, which were identified as Phoma sp. (6 isolates), Alternaria sp. (2), Bipolaris sp. (1), and Cladosporium sp. (1) based on 18S rDNA sequencing and phylogenetic analysis. The culture filtrates (CFs; 25%, 50%, and 100% concentrations) from these endophytes were tested against the growth of normal and dwarf mutant rice lines. Endophytic CF exhibited dose-dependent growth stimulation and suppression effects. CF (100%) of Phoma sp. significantly increased rice seed germination and growth compared to controls and other endophytes. This growth-promoting effect was due to the presence of indole acetic acid in endophytic CF. The gas chromatography/mass spectrometry (GC/MS) analysis showed the highest indole acetic acid content ((54.31±0.21) µmol/L) in Bipolaris sp. In addition, the isolate of Bipolaris sp. exhibited significantly higher radical scavenging and anti-lipid peroxidation activity than the other isolates. Bipolaris sp. and Phoma sp. also exhibited significantly higher flavonoid and phenolic contents. The medicinal plants exhibited the presence of bio-prospective endophytic strains, which could be used for the improvement of crop growth and the mitigation of oxidative stresses. PMID:28124841

Endophytes from medicinal plants and their potential for producing indole acetic acid, improving seed germination and mitigating oxidative stress.

PubMed

Khan, Abdul Latif; Gilani, Syed Abdullah; Waqas, Muhammad; Al-Hosni, Khadija; Al-Khiziri, Salima; Kim, Yoon-Ha; Ali, Liaqat; Kang, Sang-Mo; Asaf, Sajjad; Shahzad, Raheem; Hussain, Javid; Lee, In-Jung; Al-Harrasi, Ahmed

Medicinal plants have been used by marginal communities to treat various ailments. However, the potential of endophytes within these bio-prospective medicinal plants remains unknown. The present study elucidates the endophytic diversity of medicinal plants (Caralluma acutangula, Rhazya stricta, and Moringa peregrina) and the endophyte role in seed growth and oxidative stress. Various organs of medicinal plants yielded ten endophytes, which were identified as Phoma sp. (6 isolates), Alternaria sp. (2), Bipolaris sp. (1), and Cladosporium sp. (1) based on 18S rDNA sequencing and phylogenetic analysis. The culture filtrates (CFs; 25%, 50%, and 100% concentrations) from these endophytes were tested against the growth of normal and dwarf mutant rice lines. Endophytic CF exhibited dose-dependent growth stimulation and suppression effects. CF (100%) of Phoma sp. significantly increased rice seed germination and growth compared to controls and other endophytes. This growth-promoting effect was due to the presence of indole acetic acid in endophytic CF. The gas chromatography/mass spectrometry (GC/MS) analysis showed the highest indole acetic acid content ((54.31±0.21) µmol/L) in Bipolaris sp. In addition, the isolate of Bipolaris sp. exhibited significantly higher radical scavenging and anti-lipid peroxidation activity than the other isolates. Bipolaris sp. and Phoma sp. also exhibited significantly higher flavonoid and phenolic contents. The medicinal plants exhibited the presence of bio-prospective endophytic strains, which could be used for the improvement of crop growth and the mitigation of oxidative stresses.

Effect of nitro-L-arginine on electrical and mechanical responses to acetylcholine in the superior mesenteric artery from stroke-prone hypertensive rat

PubMed Central

Ghisdal, Philippe; Godfraind, Théophile; Morel, Nicole

1999-01-01

High salt diet is known to aggravate the vascular pathology in spontaneously hypertensive stroke-prone rats (SHR-SP). The aim of the present study was to assess the involvement of endothelial dysfunction in this effect. Contractile tension and membrane potential were simultaneously recorded in superior mesenteric artery rings of untreated and NaCl-loaded (1% NaCl in the drinking water) SHR-SP and normotensive Wistar Kyoto rats (WKY).In unstimulated artery, hyperpolarization evoked by acetylcholine was not different in WKY and in NaCl-loaded WKY; it was reduced in SHR-SP and further reduced in NaCl-loaded SHR-SP. Hyperpolarization was unaffected by Nω-nitro-L-arginine (L-NA) but was abolished in high-KCl solution.In noradrenaline-stimulated artery, ACh-evoked hyperpolarization and relaxation were not different in WKY and in SHR-SP. NaCl-treatment did not affect the responses to ACh in WKY but decreased maximum relaxation in SHR-SP from 93±2% to 72±7% of the contraction. In WKY, in NaCl-loaded WKY and in SHR-SP, L-NA similarly shifted the concentration-relaxation curve to ACh to the right and depressed its maximum but L-NA did not affect the hyperpolarization to ACh. In NaCl-loaded SHR-SP, L-NA blunted the effects of ACh on membrane potential and on contraction.The NO donor SNAP abolished the depolarization and the contraction evoked by noradrenaline with the same potency in WKY and in untreated SHR-SP but was more potent in NaCl-loaded SHR-SP.In KCl-contracted arteries the relaxations to ACh were not different in WKY and SHR-SP but NaCl-loaded SHR-SP were more sensitive to ACh.The results showed that NaCl-rich diet markedly reduced the L-NA-resistant responses to ACh and increased the sensitivity to NO in SHR-SP. PMID:10602331

Monitoring underground migration of sequestered CO2 using self-potential methods

NASA Astrophysics Data System (ADS)

Ishido, T.; Pritchett, J.; Tosha, T.; Nishi, Y.; Nakanishi, S.

2013-12-01

An appropriate monitoring program is indispensable for an individual geologic storage project to aid in answering various operational questions by detecting changes within the reservoir and to provide early warning of potential CO2 leakage through the caprock. Such a program is also essential to reduce uncertainties associated with reservoir parameters and to improve the predictive capability of reservoir models. Repeat geophysical measurements performed at the earth surface show particular promise for monitoring large subsurface volumes. To appraise the utility of geophysical techniques, Ishido et al. carried out numerical simulations of an aquifer system underlying a portion of Tokyo Bay and calculated the temporal changes in geophysical observables caused by changing underground conditions as computed by reservoir simulation (Energy Procedia, 2011). They used 'geophysical postprocessors' to calculate the resulting temporal changes in the earth-surface distributions of microgravity, self-potential (SP), apparent resistivity (from MT surveys) and seismic observables. The applicability of any particular method is likely to be highly site-specific, but these calculations indicate that none of these techniques should be ruled out altogether. Some survey techniques (gravity, MT resistivity) appear to be suitable for characterizing long-term changes, whereas others (seismic reflection, SP) are quite responsive to short term disturbances. The self-potential postprocessor calculates changes in subsurface electrical potential induced by pressure disturbances through electrokinetic coupling (Ishido & Pritchett, JGR 1999). In addition to electrokinetic coupling, SP anomalies may be generated by various other mechanisms such as thermoelectric coupling, electrochemical diffusion potential, etc. In particular, SP anomalies of negative polarity, which are frequently observed near wells, appear to be caused by an underground electrochemical mechanism similar to a galvanic cell known as a 'geobattery' (e.g. Sato & Mooney, Geophysics 1960; Bigalke & Grabner, Electrochimica Acta 1997): the metallic well casing acts as a vertical electronic conductor connecting regions of differing redox potential. Electrons flow upward though the casing from a deeper reducing environment to a shallower oxidizing environment, and simultaneously a compensating vertical flow of ions is induced in the surrounding formation to maintain charge neutrality. If the redox potential in the deeper region is then increased by injecting an oxidizing substance, the difference in redox potential between the shallower and deeper regions will be reduced, resulting in an SP increase near the wellhead. We will report the results of SP measurements during gas (CO2 or air) injection tests at various sites and numerical simulations carried out using the extended SP postprocessor, which incorporates the above 'geobattery' mechanism in addition to electrokinetic coupling, and discuss the possibility mentioned above more quantitatively.

Response of Nitrosospira sp. strain AF-like ammonia oxidizers to changes in temperature, soil moisture content, and fertilizer concentration.

PubMed

Avrahami, Sharon; Bohannan, Brendan J M

2007-02-01

Very little is known regarding the ecology of Nitrosospira sp. strain AF-like bacteria, a unique group of ammonia oxidizers within the Betaproteobacteria. We studied the response of Nitrosospira sp. strain AF-like ammonia oxidizers to changing environmental conditions by applying molecular methods and physiological measurements to Californian grassland soil manipulated in the laboratory. This soil is naturally high in Nitrosospira sp. strain AF-like bacteria relative to the much-better-studied Nitrosospira multiformis-like ammonia-oxidizing bacteria. Increases in temperature, soil moisture, and fertilizer interacted to reduce the relative abundance of Nitrosospira sp. strain AF-like bacteria, although they remained numerically dominant. The overall abundance of ammonia-oxidizing bacteria increased with increasing soil moisture and decreased with increasing temperature. Potential nitrification activity was altered by interactions among temperature, soil moisture, and fertilizer, with activity tending to be higher when soil moisture and temperature were increased. The increase in potential nitrification activity with increased temperature was surprising, given that the overall abundance of ammonia-oxidizing bacteria decreased significantly under these conditions. This observation suggests that (i) Nitrosospira sp. strain AF-like bacteria may respond to increased temperature with an increase in activity, despite a decrease in abundance, or (ii) that potential nitrification activity in these soils may be due to organisms other than bacteria (e.g., archaeal ammonia oxidizers), at least under conditions of increased temperature.

Response of Nitrosospira sp. Strain AF-Like Ammonia Oxidizers to Changes in Temperature, Soil Moisture Content, and Fertilizer Concentration▿

PubMed Central

Avrahami, Sharon; Bohannan, Brendan J. M.

2007-01-01

Very little is known regarding the ecology of Nitrosospira sp. strain AF-like bacteria, a unique group of ammonia oxidizers within the Betaproteobacteria. We studied the response of Nitrosospira sp. strain AF-like ammonia oxidizers to changing environmental conditions by applying molecular methods and physiological measurements to Californian grassland soil manipulated in the laboratory. This soil is naturally high in Nitrosospira sp. strain AF-like bacteria relative to the much-better-studied Nitrosospira multiformis-like ammonia-oxidizing bacteria. Increases in temperature, soil moisture, and fertilizer interacted to reduce the relative abundance of Nitrosospira sp. strain AF-like bacteria, although they remained numerically dominant. The overall abundance of ammonia-oxidizing bacteria increased with increasing soil moisture and decreased with increasing temperature. Potential nitrification activity was altered by interactions among temperature, soil moisture, and fertilizer, with activity tending to be higher when soil moisture and temperature were increased. The increase in potential nitrification activity with increased temperature was surprising, given that the overall abundance of ammonia-oxidizing bacteria decreased significantly under these conditions. This observation suggests that (i) Nitrosospira sp. strain AF-like bacteria may respond to increased temperature with an increase in activity, despite a decrease in abundance, or (ii) that potential nitrification activity in these soils may be due to organisms other than bacteria (e.g., archaeal ammonia oxidizers), at least under conditions of increased temperature. PMID:17158615

Influence of surface conductivity on the apparent zeta potential of calcite.

PubMed

Li, Shuai; Leroy, Philippe; Heberling, Frank; Devau, Nicolas; Jougnot, Damien; Chiaberge, Christophe

2016-04-15

Zeta potential is a physicochemical parameter of particular importance in describing the surface electrical properties of charged porous media. However, the zeta potential of calcite is still poorly known because of the difficulty to interpret streaming potential experiments. The Helmholtz-Smoluchowski (HS) equation is widely used to estimate the apparent zeta potential from these experiments. However, this equation neglects the influence of surface conductivity on streaming potential. We present streaming potential and electrical conductivity measurements on a calcite powder in contact with an aqueous NaCl electrolyte. Our streaming potential model corrects the apparent zeta potential of calcite by accounting for the influence of surface conductivity and flow regime. We show that the HS equation seriously underestimates the zeta potential of calcite, particularly when the electrolyte is diluted (ionic strength ⩽ 0.01 M) because of calcite surface conductivity. The basic Stern model successfully predicted the corrected zeta potential by assuming that the zeta potential is located at the outer Helmholtz plane, i.e. without considering a stagnant diffuse layer at the calcite-water interface. The surface conductivity of calcite crystals was inferred from electrical conductivity measurements and computed using our basic Stern model. Surface conductivity was also successfully predicted by our surface complexation model. Copyright © 2016 Elsevier Inc. All rights reserved.

Metagenome-Assembled Genome Sequences of Acetobacterium sp. Strain MES1 and Desulfovibrio sp. Strain MES5 from a Cathode-Associated Acetogenic Microbial Community.

PubMed

Ross, Daniel E; Marshall, Christopher W; May, Harold D; Norman, R Sean

2017-09-07

Draft genome sequences of Acetobacterium sp. strain MES1 and Desulfovibrio sp. strain MES5 were obtained from the metagenome of a cathode-associated community enriched within a microbial electrosynthesis system (MES). The draft genome sequences provide insight into the functional potential of these microorganisms within an MES and a foundation for future comparative analyses. Copyright © 2017 Ross et al.

Dearomatization of diesel oil using Pseudomonas sp.

PubMed

Khan, Samiya; Gupta, Sanjay; Gupta, Nidhi

2018-05-25

To improve the quality of diesel fuel via removal of aromatic compounds using Pseudomonas sp. In the present study Pseudomonas sp. was able to remove 94% of fluorene, 59% of phenanthrene, 49% of anthracene, 52% of fluoranthene, 45% of pyrene and 75% carbazole present in diesel oil. Additionally, it also does not affect the aliphatic content of fuel thus maintaining the carbon backbone of the fuel. Pseudomonas sp. is a potential biocatalyst that can be used in the refining industry.

Intestinal Parasitic Infections and Environmental Water Contamination in a Rural Village of Northern Lao PDR.

PubMed

Ribas, Alexis; Jollivet, Chloé; Morand, Serge; Thongmalayvong, Boupha; Somphavong, Silaphet; Siew, Chern-Chiang; Ting, Pei-Jun; Suputtamongkol, Saipin; Saensombath, Viengsaene; Sanguankiat, Surapol; Tan, Boon-Huan; Paboriboune, Phimpha; Akkhavong, Kongsap; Chaisiri, Kittipong

2017-10-01

A field survey studying intestinal parasites in humans and microbial pathogen contamination at environment was performed in a Laotian rural village to identify potential risks for disease outbreaks. A parasitological investigation was conducted in Ban Lak Sip village, Luang Prabang, Lao PDR involving fecal samples from 305 inhabitants as well as water samples taken from 3 sites of the local stream. Water analysis indicated the presence of several enteric pathogens, i.e., Aeromonas spp., Vibrio spp., E. coli H7, E. coli O157: H7, verocytotoxin-producing E. coli (VTEC), Shigella spp., and enteric adenovirus. The level of microbial pathogens contamination was associated with human activity, with greater levels of contamination found at the downstream site compared to the site at the village and upstream, respectively. Regarding intestinal parasites, the prevalence of helminth and protozoan infections were 68.9% and 27.2%, respectively. Eight helminth taxa were identified in fecal samples, i.e., 2 tapeworm species (Taenia sp. and Hymenolepis diminuta), 1 trematode (Opisthorchis sp.), and 5 nematodes (Ascaris lumbricoides, Trichuris trichiura, Strongyloides stercoralis, trichostrongylids, and hookworms). Six species of intestinal protists were identified, i.e., Blastocystis hominis, Cyclospora spp., Endolimax nana, Entamoeba histolytica/E. dispar, Entamoeba coli, and Giardia lamblia. Questionnaires and interviews were also conducted to determine risk factors of infection. These analyses together with a prevailing infection level suggested that most of villagers were exposed to parasites in a similar degree due to limited socio-economic differences and sharing of similar practices. Limited access to effective public health facilities is also a significant contributing factor.

Intestinal Parasitic Infections and Environmental Water Contamination in a Rural Village of Northern Lao PDR

PubMed Central

Ribas, Alexis; Jollivet, Chloé; Morand, Serge; Thongmalayvong, Boupha; Somphavong, Silaphet; Siew, Chern-Chiang; Ting, Pei-Jun; Suputtamongkol, Saipin; Saensombath, Viengsaene; Sanguankiat, Surapol; Tan, Boon-Huan; Paboriboune, Phimpha; Akkhavong, Kongsap; Chaisiri, Kittipong

2017-01-01

A field survey studying intestinal parasites in humans and microbial pathogen contamination at environment was performed in a Laotian rural village to identify potential risks for disease outbreaks. A parasitological investigation was conducted in Ban Lak Sip village, Luang Prabang, Lao PDR involving fecal samples from 305 inhabitants as well as water samples taken from 3 sites of the local stream. Water analysis indicated the presence of several enteric pathogens, i.e., Aeromonas spp., Vibrio spp., E. coli H7, E. coli O157: H7, verocytotoxin-producing E. coli (VTEC), Shigella spp., and enteric adenovirus. The level of microbial pathogens contamination was associated with human activity, with greater levels of contamination found at the downstream site compared to the site at the village and upstream, respectively. Regarding intestinal parasites, the prevalence of helminth and protozoan infections were 68.9% and 27.2%, respectively. Eight helminth taxa were identified in fecal samples, i.e., 2 tapeworm species (Taenia sp. and Hymenolepis diminuta), 1 trematode (Opisthorchis sp.), and 5 nematodes (Ascaris lumbricoides, Trichuris trichiura, Strongyloides stercoralis, trichostrongylids, and hookworms). Six species of intestinal protists were identified, i.e., Blastocystis hominis, Cyclospora spp., Endolimax nana, Entamoeba histolytica/E. dispar, Entamoeba coli, and Giardia lamblia. Questionnaires and interviews were also conducted to determine risk factors of infection. These analyses together with a prevailing infection level suggested that most of villagers were exposed to parasites in a similar degree due to limited socio-economic differences and sharing of similar practices. Limited access to effective public health facilities is also a significant contributing factor. PMID:29103267

Aquatic Nuisance Sp[ecies Research Program. Ecological Impacts of Suckermouth Catfishes (Loricariidae) in North America: A Conceptual Model. Volume 14-1, March 2014

DTIC Science & Technology

2014-03-01

not provide effective control. Most tropical fi sh commercially available to hobbyists have recommended temperature requirements > 20 oC (e.g...at 10-12 oC (RR-C). This suggests lower lethal temperatures of 12-14 oC, but laboratory studies by the Florida Fish and Wildlife Conservation...55(5): 58-60. Flecker, A.S. 1992. Fish trophic guilds and the structure of a tropical stream: Weak vs. strong indirect effects . Ecology 73

The trophic ecology of key megafaunal species at the Pakistan Margin: Evidence from stable isotopes and lipid biomarkers

NASA Astrophysics Data System (ADS)

Jeffreys, Rachel M.; Wolff, George A.; Murty, Sarah J.

2009-10-01

The Arabian Sea is subject to intense seasonality resulting from biannual monsoons, which lead to associated large particulate fluxes and an abundance of organic carbon, a potential food source at the seafloor for benthic detritivores. We used the stable isotopes of carbon and nitrogen alongside lipid analyses to examine potential food sources (particulate and sedimentary organic matter, POM and SOM respectively) in order to determine trophic linkages for the twelve most abundant megafaunal species ( Pontocaris sp., Solenocera sp., Munidopsis aff. scobina, Actinoscyphia sp., Actinauge sp., Echinoptilum sp., Pennatula aff. grandis, Astropecten sp. Amphiura sp. Ophiura euryplax, Phormosoma placenta and Hyalinoecia sp.) at the Pakistan Margin between 140 and 1400 m water depth. This transect spans a steep gradient in oxygen concentrations and POM flux. Ranges of δ 13C and δ 15N values were narrow in POM and SOM (˜4‰ and ˜2‰ for δ 13C and δ 15N, respectively) with little evidence of temporal variability. Labile lipid compounds in SOM originating from phytoplankton did exhibit seasonal change in their concentrations at the shallowest sites, 140 and 300 m. Benthic megafauna had broad ranges in δ 13C and δ 15N (>10‰ and >8‰ for δ 13C and δ 15N, respectively) suggesting they occupy several trophic levels and utilize a variety of food sources. There is evidence for feeding niche separation between and within trophic groups. Lipid biomarkers in animal tissues indicate a mixture of food sources originating from both phytoplankton (C 20:5(n-3) and C 22:6(n-3)) and invertebrate prey (C 20:1 and C 22:1). Biomarkers originating from phytodetritus are conserved through trophic transfer to the predator/scavengers. Six species ( Pontocaris sp., Solenocera sp., Actinoscyphia sp., Echinoptilum sp., Amphiura sp. and Hyalinoecia sp.) showed a significant biochemical response to the seasonal supply of food and probably adapt their trophic strategy to low food availability. Biotransformation of assimilated lipids by megafauna is evident from polyunsaturated fatty acid distributions, for example, Echinoptilum sp. converts C 20:5(n-3) to C 24:6(n-3).

A landslide is a landslide is a landslide… Or is it? Defining landslide potential across large landscapes

Treesearch

Jonathan Thompson; Kelly Burnett

2008-01-01

Not all landslides are created equal. Some have the potential to run out to streams and others do not. Some are likely to simplify and damage stream habitat, and others can be important sources of gravel and large wood, fundamental components of habitat complexity for salmon and other stream inhabitants. Forest managers want to avoid negative consequences and promote...

Potential Applicability of Assembled Chemical Weapons Assessment Technologies to RCRA Waste Streams and Contaminated Media (PDF)

EPA Pesticide Factsheets

This report provides an evaluation of the potential applicability of Assembled Chemical Weapons Assessment (ACWA) technologies to RCRA waste streams and contaminated media found at RCRA and Superfund sites.

Study on E. coli and Salmonella biofilms from fresh fruits and vegetables.

PubMed

Amrutha, Balagopal; Sundar, Kothandapani; Shetty, Prathapkumar Halady

2017-04-01

Foodborne outbreaks associated with fresh fruits and vegetables are on the rise worldwide. Biofilm formation is one of the important traits of pathogens making them strongly attached to substrates as well as express virulence phenotypes. Present study investigates the biofilm forming ability of E. coli and Salmonella sp. isolated from fresh fruits and vegetables. A total of 53 strains, including 35 E. coli and 18 Salmonella sp. isolated from different fruit and vegetable samples were taken into account for the study. Initial screening for biofilm formation was done using Congo Red agar plate test. Results revealed that 22.8% E. coli and 22.2% Salmonella sp. were potential biofilm formers. However, the MTP (Micro-Titre Plate) assay suggested more isolates of both E. coli and Salmonella sp. were moderate to strong biofilm producers. Agar plate diffusion assay with Agrobacterium tumefaciens NTL-4 showed the production of quorum signaling molecules (AHLs) by three isolates of E. coli and one Salmonella sp. Two E. coli isolates showed a significant amount of EPS production indicating higher biofilm forming potential. The Presence of LUX R homologue gene ( sdi A) in two of the Salmonella isolates were confirmed by PCR which demonstrated their potential pathogenicity. Results of the work underline the biofilm forming and potentially virulent capacities of isolates from the surface of fruits and vegetables.

Parametric distribution approach for flow availability in small hydro potential analysis

NASA Astrophysics Data System (ADS)

Abdullah, Samizee; Basri, Mohd Juhari Mat; Jamaluddin, Zahrul Zamri; Azrulhisham, Engku Ahmad; Othman, Jamel

2016-10-01

Small hydro system is one of the important sources of renewable energy and it has been recognized worldwide as clean energy sources. Small hydropower generation system uses the potential energy in flowing water to produce electricity is often questionable due to inconsistent and intermittent of power generated. Potential analysis of small hydro system which is mainly dependent on the availability of water requires the knowledge of water flow or stream flow distribution. This paper presented the possibility of applying Pearson system for stream flow availability distribution approximation in the small hydro system. By considering the stochastic nature of stream flow, the Pearson parametric distribution approximation was computed based on the significant characteristic of Pearson system applying direct correlation between the first four statistical moments of the distribution. The advantage of applying various statistical moments in small hydro potential analysis will have the ability to analyze the variation shapes of stream flow distribution.

Salinity induced oxidative stress enhanced biofuel production potential of microalgae Scenedesmus sp. CCNM 1077.

PubMed

Pancha, Imran; Chokshi, Kaumeel; Maurya, Rahulkumar; Trivedi, Khanjan; Patidar, Shailesh Kumar; Ghosh, Arup; Mishra, Sandhya

2015-01-01

Microalgal biomass is considered as potential feedstock for biofuel production. Enhancement of biomass, lipid and carbohydrate contents in microalgae is important for the commercialization of microalgal biofuels. In the present study, salinity stress induced physiological and biochemical changes in microalgae Scenedesmus sp. CCNM 1077 were studied. During single stage cultivation, 33.13% lipid and 35.91% carbohydrate content was found in 400 mM NaCl grown culture. During two stage cultivation, salinity stress of 400 mM for 3 days resulted in 24.77% lipid (containing 74.87% neutral lipid) along with higher biomass compared to single stage, making it an efficient strategy to enhance biofuel production potential of Scenedesmus sp. CCNM 1077. Apart from biochemical content, stress biomarkers like hydrogen peroxide, lipid peroxidation, ascorbate peroxidase, proline and mineral contents were also studied to understand the role of reactive oxygen species (ROS) mediated lipid accumulation in microalgae Scenedesmus sp. CCNM 1077. Copyright © 2015 Elsevier Ltd. All rights reserved.

Enhanced biofuel production potential with nutritional stress amelioration through optimization of carbon source and light intensity in Scenedesmus sp. CCNM 1077.

PubMed

Pancha, Imran; Chokshi, Kaumeel; Mishra, Sandhya

2015-03-01

Microalgal mixotrophic cultivation is one of the most potential ways to enhance biomass and biofuel production. In the present study, first of all ability of microalgae Scenedesmus sp. CCNM 1077 to utilize various carbon sources under mixotrophic growth condition was evaluated followed by optimization of glucose concentration and light intensity to obtain higher biomass, lipid and carbohydrate contents. Under optimized condition i.e. 4 g/L glucose and 150 μmol m(-2) s(-1) light intensity, Scenedesmus sp. CCNM 1077 produced 1.2g/L dry cell weight containing 23.62% total lipid and 42.68% carbohydrate. Addition of glucose shown nutritional stress ameliorating effects and around 70% carbohydrate and 25% total lipid content was found with only 21% reduction in dry cell weight under nitrogen starved condition. This study shows potential application of mixotrophically grown Scenedesmus sp. CCNM 1077 for bioethanol and biodiesel production feed stock. Copyright © 2014 Elsevier Ltd. All rights reserved.

Effectiveness of best management practices for sediment reduction at operation forest stream crossings

Treesearch

Laura R. Wear; Michael W. Aust; M. Chad Bolding; Brian D. Strahm; C. Andrew Dolloff

2013-01-01

Temporary skid trail stream crossings have repeatedly been identified as having considerable potential to introduce sediment to streams. Forestry Best Management Practices (BMPs) have proven to be effective for controlling erosion and subsequent sedimentation, yet few studies have quantified sedimentation associated with various levels of BMPs for skidder stream...

The Potential Role of Seaweeds in the Natural Manipulation of Rumen Fermentation and Methane Production.

PubMed

Maia, Margarida R G; Fonseca, António J M; Oliveira, Hugo M; Mendonça, Carla; Cabrita, Ana R J

2016-08-30

This study is the first to evaluate the effects of five seaweeds (Ulva sp., Laminaria ochroleuca, Saccharina latissima, Gigartina sp., and Gracilaria vermiculophylla) on gas and methane production and ruminal fermentation parameters when incubated in vitro with two substrates (meadow hay and corn silage) for 24 h. Seaweeds led to lower gas production, with Gigartina sp. presenting the lowest value. When incubated with meadow hay, Ulva sp., Gigartina sp. and G. vermiculophylla decreased methane production, but with corn silage, methane production was only decreased by G. vermiculophylla. With meadow hay, L. ochroleuca and S. latissima promoted similar methane production as the control, but with corn silage, L. ochroleuca increased it. With the exception of S. latissima, all seaweeds promoted similar levels of total volatile fatty acid production. The highest proportion of acetic acid was produced with Ulva sp., G. vermiculophylla, and S. latissima; the highest proportion of butyric acid with the control and L. ochroleuca; and the highest proportion of iso-valeric acid with Gigartina sp. These results reveal the potential of seaweeds to mitigate ruminal methane production and the importance of the basal diet. To efficiently use seaweeds as feed ingredients with nutritional and environmental benefits, more research is required to determine the mechanisms underlying seaweed and substrate interactions.

The Potential Role of Seaweeds in the Natural Manipulation of Rumen Fermentation and Methane Production

PubMed Central

Maia, Margarida R. G.; Fonseca, António J. M.; Oliveira, Hugo M.; Mendonça, Carla; Cabrita, Ana R. J.

2016-01-01

This study is the first to evaluate the effects of five seaweeds (Ulva sp., Laminaria ochroleuca, Saccharina latissima, Gigartina sp., and Gracilaria vermiculophylla) on gas and methane production and ruminal fermentation parameters when incubated in vitro with two substrates (meadow hay and corn silage) for 24 h. Seaweeds led to lower gas production, with Gigartina sp. presenting the lowest value. When incubated with meadow hay, Ulva sp., Gigartina sp. and G. vermiculophylla decreased methane production, but with corn silage, methane production was only decreased by G. vermiculophylla. With meadow hay, L. ochroleuca and S. latissima promoted similar methane production as the control, but with corn silage, L. ochroleuca increased it. With the exception of S. latissima, all seaweeds promoted similar levels of total volatile fatty acid production. The highest proportion of acetic acid was produced with Ulva sp., G. vermiculophylla, and S. latissima; the highest proportion of butyric acid with the control and L. ochroleuca; and the highest proportion of iso-valeric acid with Gigartina sp. These results reveal the potential of seaweeds to mitigate ruminal methane production and the importance of the basal diet. To efficiently use seaweeds as feed ingredients with nutritional and environmental benefits, more research is required to determine the mechanisms underlying seaweed and substrate interactions. PMID:27572486

The Potential Role of Seaweeds in the Natural Manipulation of Rumen Fermentation and Methane Production

NASA Astrophysics Data System (ADS)

Maia, Margarida R. G.; Fonseca, António J. M.; Oliveira, Hugo M.; Mendonça, Carla; Cabrita, Ana R. J.

2016-08-01

This study is the first to evaluate the effects of five seaweeds (Ulva sp., Laminaria ochroleuca, Saccharina latissima, Gigartina sp., and Gracilaria vermiculophylla) on gas and methane production and ruminal fermentation parameters when incubated in vitro with two substrates (meadow hay and corn silage) for 24 h. Seaweeds led to lower gas production, with Gigartina sp. presenting the lowest value. When incubated with meadow hay, Ulva sp., Gigartina sp. and G. vermiculophylla decreased methane production, but with corn silage, methane production was only decreased by G. vermiculophylla. With meadow hay, L. ochroleuca and S. latissima promoted similar methane production as the control, but with corn silage, L. ochroleuca increased it. With the exception of S. latissima, all seaweeds promoted similar levels of total volatile fatty acid production. The highest proportion of acetic acid was produced with Ulva sp., G. vermiculophylla, and S. latissima; the highest proportion of butyric acid with the control and L. ochroleuca; and the highest proportion of iso-valeric acid with Gigartina sp. These results reveal the potential of seaweeds to mitigate ruminal methane production and the importance of the basal diet. To efficiently use seaweeds as feed ingredients with nutritional and environmental benefits, more research is required to determine the mechanisms underlying seaweed and substrate interactions.

Strong wave/mean-flow coupling in baroclinic acoustic streaming

NASA Astrophysics Data System (ADS)

Chini, Greg; Michel, Guillaume

2017-11-01

Recently, Chini et al. demonstrated the potential for large-amplitude acoustic streaming in compressible channel flows subjected to strong background cross-channel density variations. In contrast with classic Rayleigh streaming, standing acoustic waves of O (ɛ) amplitude acquire vorticity owing to baroclinic torques acting throughout the domain rather than via viscous torques acting in Stokes boundary layers. More significantly, these baroclinically-driven streaming flows have a magnitude that also is O (ɛ) , i.e. comparable to that of the sound waves. In the present study, the consequent potential for fully two-way coupling between the waves and streaming flows is investigated using a novel WKBJ analysis. The analysis confirms that the wave-driven streaming flows are sufficiently strong to modify the background density gradient, thereby modifying the leading-order acoustic wave structure. Simulations of the wave/mean-flow system enabled by the WKBJ analysis are performed to illustrate the nature of the two-way coupling, which contrasts sharply with classic Rayleigh streaming, for which the waves can first be determined and the streaming flows subsequently computed.

Linking Antimicrobial Potential of Natural Products Derived from Aquatic Organisms and Microbes Involved in Alzheimer's Disease - A Review.

PubMed

Stojkovic, Dejan; Kostic, Marina; Smiljkovic, Marija; Aleksic, Milena; Vasiljevic, Perica; Nikolic, Milos; Sokovic, Marina

2018-03-08

The following review is oriented towards microbes linked to Alzheimer's disease (AD) and antimicrobial effect of compounds and extracts derived from aquatic organisms against specific bacteria, fungi and viruses which were found previously in patients suffering from AD. Major group of microbes linked to AD include bacteria: Chlamydia pneumoniae, Helicobacter pylori, Porphyromonas gingivalis, Fusobacterium nucleatum, Prevotella intermedia, Actinomyces naeslundii, spirochete group; fungi: Candida sp., Cryptococcus sp., Saccharomyces sp., Malassezia sp., Botrytis sp., and viruses: herpes simplex virus type 1 (HSV-1), Human cytomegalovirus (CMV), hepatitis C virus (HCV). In the light of that fact, this review is the first to link antimicrobial potential of aquatic organisms against these sorts of microbes. This literature review might serve as a starting platform to develop novel supportive therapy for patients suffering from AD and to possibly prevent escalation of the disease in patients already having high risk factors for AD occurrence. Copyright© Bentham Science Publishers; For any queries, please email at epub@benthamscience.org.

A hydrogeomorphic river network model predicts where and why hyporheic exchange is important in large basins

USGS Publications Warehouse

Gomez-Velez, Jesus D.; Harvey, Judson

2014-01-01

Hyporheic exchange has been hypothesized to have basin-scale consequences; however, predictions throughout river networks are limited by available geomorphic and hydrogeologic data and by models that can analyze and aggregate hyporheic exchange flows across large spatial scales. We developed a parsimonious but physically based model of hyporheic flow for application in large river basins: Networks with EXchange and Subsurface Storage (NEXSS). We applied NEXSS across a broad range of geomorphic diversity in river reaches and synthetic river networks. NEXSS demonstrates that vertical exchange beneath submerged bed forms rather than lateral exchange through meanders dominates hyporheic fluxes and turnover rates along river corridors. Per kilometer, low-order streams have a biogeochemical potential at least 2 orders of magnitude larger than higher-order streams. However, when biogeochemical potential is examined per average length of each stream order, low- and high-order streams were often found to be comparable. As a result, the hyporheic zone's intrinsic potential for biogeochemical transformations is comparable across different stream orders, but the greater river miles and larger total streambed area of lower order streams result in the highest cumulative impact from low-order streams. Lateral exchange through meander banks may be important in some cases but generally only in large rivers.

A hydrogeomorphic river network model predicts where and why hyporheic exchange is important in large basins

NASA Astrophysics Data System (ADS)

Gomez-Velez, Jesus D.; Harvey, Judson W.

2014-09-01

Hyporheic exchange has been hypothesized to have basin-scale consequences; however, predictions throughout river networks are limited by available geomorphic and hydrogeologic data and by models that can analyze and aggregate hyporheic exchange flows across large spatial scales. We developed a parsimonious but physically based model of hyporheic flow for application in large river basins: Networks with EXchange and Subsurface Storage (NEXSS). We applied NEXSS across a broad range of geomorphic diversity in river reaches and synthetic river networks. NEXSS demonstrates that vertical exchange beneath submerged bed forms rather than lateral exchange through meanders dominates hyporheic fluxes and turnover rates along river corridors. Per kilometer, low-order streams have a biogeochemical potential at least 2 orders of magnitude larger than higher-order streams. However, when biogeochemical potential is examined per average length of each stream order, low- and high-order streams were often found to be comparable. As a result, the hyporheic zone's intrinsic potential for biogeochemical transformations is comparable across different stream orders, but the greater river miles and larger total streambed area of lower order streams result in the highest cumulative impact from low-order streams. Lateral exchange through meander banks may be important in some cases but generally only in large rivers.

Australian Assassins, Part III: A review of the Assassin Spiders (Araneae, Archaeidae) of tropical north-eastern Queensland

PubMed Central

Rix, Michael G.; Harvey, Mark S.

2012-01-01

Abstract The assassin spiders of the family Archaeidae from tropical north-eastern Queensland are revised, with eight new species described from rainforest habitats of the Wet Tropics bioregion and Mackay-Whitsundays Hinterland: Austrarchaea griswoldi sp. n., Austrarchaea hoskini sp. n., Austrarchaea karenae sp. n., Austrarchaea tealei sp. n., Austrarchaea thompsoni sp. n., Austrarchaea wallacei sp. n., Austrarchaea westi sp. n. and Austrarchaea woodae sp. n. Specimens of the only previously described species, Austrarchaea daviesae Forster & Platnick, 1984, are redescribed from the southern Atherton Tableland. The rainforests of tropical eastern Queensland are found to be a potential hotspot of archaeid diversity and endemism, with the region likely to be home to numerous additional short-range endemic taxa. A key to species complements the taxonomy, with maps, natural history information and conservation assessments provided for all species. PMID:22977344

Symbiosis between microorganisms from kombucha and kefir: Potential significance to the enhancement of kombucha function.

PubMed

Yang, Zhiwei; Zhou, Feng; Ji, Baoping; Li, Bo; Luo, Yangchao; Yang, Li; Li, Tao

2010-01-01

Gluconacetobacter sp. A4 (G. sp. A4), which had strong ability to produce d-saccharic acid 1, 4 lactone (DSL), was the key functional bacteria isolated from the kombucha preserved. This paper investigated the interaction between G. sp. A4 and ten different strains of lactic acid bacteria (LAB) obtained from kefir. The result suggested that the LAB promoted DSL production of G. sp. A4 to different extents, ranging from 4.86% to 86.70%. Symbiosis between G. sp. A4 and LAB was studied. LAB's metabolites, xylitol, and acetic acid, were utilized by G. sp. A4, and it promoted the growth of G. sp. A4 and yield of DSL. Therefore, in developing starter cultures for kombucha fermentation process, a mixed flora of LAB and G. sp. A4 would be the optimal combination.

A Sand Fly Salivary Protein Vaccine Shows Efficacy Against Vector-Transmitted Cutaneous Leishmaniasis in Nonhuman Primates

DTIC Science & Technology

2015-06-03

demonstrating its immunogenicity in humans. PdSP15 sequence and structure show no homol- ogy to mammalian proteins, further demonstrating its potential...sequence or structure homology to known human proteins The protective salivary antigen PdSP15 shares sequence homology only to the small odorant binding...salivary proteins PpSP15 and PsSP15, respectively (Fig. 4B). To exclude any structural similarities to human pro teins, the crystal structure of PdPS15

Surfactant protein A (SP-A) inhibits agglomeration and macrophage uptake of toxic amine modified nanoparticles.

PubMed

McKenzie, Zofi; Kendall, Michaela; Mackay, Rose-Marie; Whitwell, Harry; Elgy, Christine; Ding, Ping; Mahajan, Sumeet; Morgan, Cliff; Griffiths, Mark; Clark, Howard; Madsen, Jens

2015-01-01

The lung provides the main route for nanomaterial exposure. Surfactant protein A (SP-A) is an important respiratory innate immune molecule with the ability to bind or opsonise pathogens to enhance phagocytic removal from the airways. We hypothesised that SP-A, like surfactant protein D, may interact with inhaled nanoparticulates, and that this interaction will be affected by nanoparticle (NP) surface characteristics. In this study, we characterise the interaction of SP-A with unmodified (U-PS) and amine-modified (A-PS) polystyrene particles of varying size and zeta potential using dynamic light scatter analysis. SP-A associated with both 100 nm U-PS and A-PS in a calcium-independent manner. SP-A induced significant calcium-dependent agglomeration of 100 nm U-PS NPs but resulted in calcium-independent inhibition of A-PS self agglomeration. SP-A enhanced uptake of 100 nm U-PS into macrophage-like RAW264.7 cells in a dose-dependent manner but in contrast inhibited A-PS uptake. Reduced association of A-PS particles in RAW264.7 cells following pre-incubation of SP-A was also observed with coherent anti-Stokes Raman spectroscopy. Consistent with these findings, alveolar macrophages (AMs) from SP-A(-/-) mice were more efficient at uptake of 100 nm A-PS compared with wild type C57Bl/6 macrophages. No difference in uptake was observed with 500 nm U-PS or A-PS particles. Pre-incubation with SP-A resulted in a significant decrease in uptake of 100 nm A-PS in macrophages isolated from both groups of mice. In contrast, increased uptake by AMs of U-PS was observed after pre-incubation with SP-A. Thus we have demonstrated that SP-A promotes uptake of non-toxic U-PS particles but inhibits the clearance of potentially toxic A-PS particles by blocking uptake into macrophages.

Effects of substance P on carotid chemoreceptor activity in the cat.

PubMed Central

McQueen, D S

1980-01-01

1. The influence of substance P (SP) on spontaneous chemosensory discharge and on responses of the carotid chemoreceptors to various drugs has been investigated in pentobarbitone anaesthetized casts in which chemoreceptor activity was recorded from the peripheral end of a sectioned sinus nerve. 2. After an initial slight inhibition during the first 5--15 sec following the injection, SP (0.1--100 microgram I.A.) caused a dose-related increase in discharge which lasted for 45--300 sec in artificially ventilated cats, discharge being increased by about 50% on average. The increase was of shorter duration when the animals were allowed to breathe spontaneously. 3. The delayed increase in discharge was not secondary to the hypotension caused by SP, nor was it entirely due to changes in bronchomotor tone resulting from direct or indirect actions of SP, although such changes contributed to the response. It was not possible to determine whether the excitation was due to a direct effect of SP on the chemoreceptors. 4. Chemosensory excitation evoked by NaCN (5 microgram I.A.) was potentiated during I.A. infusions of SP and also 10--20 min after SP (10 microgram I.A.) had been injected. In contrast, responses to ACh (50 microgram I.A.) were inhibited. These effects may be due to a nicotinic-blocking action of SP on the carotid chemoreceptors. It was also found that the inhibitory action of dopamine (5 microgram I.A.) was reduced during SP infusion whereas that of 5-HT (10 microgram I.A.) was potentiated. 5. A sample of crude SP had effects on spontaneous chemoreceptor discharge and responses to NaCN and ACh which were qualitatively similar to those obtained using synthetic SP. 6. The physiological significance of the results is discussed and it is concluded that the interpretation depends upon whether or not SP is present in the cat's carotid body. PMID:6157809

Tracing seasonal groundwater contributions to stream flow using a suite of environmental isotopes

NASA Astrophysics Data System (ADS)

Pritchard, J. L.; Herczeg, A. L.; Lamontagne, S.

2003-04-01

Groundwater discharge to streams is important for delivering essential solutes to maintain ecosystem health and flow throughout dry seasons. However, managing the groundwater components of stream flow is difficult because several sources of water can contribute, including delayed drainage from bank storage and regional groundwater. In this study we assessed the potential for a variety of environmental tracers to discriminate between different sources of water to stream flow. A case study comparing Cl-, delta O-18 &delta H-2, Rn-222 and 87Sr/86Sr to investigate the spatial and temporal variability of groundwater inputs to stream flow was conducted in the Wollombi Brook Catchment (SE Australia). The objectives were to characterise the three potential sources of water to stream flow (surface water, groundwater from the near-stream sandy alluvial aquifer system, and groundwater from the regional sandstone aquifer system) and estimate their relative contributions to stream discharge at flood recession and baseflow. Surface water was sampled at various locations along the Wollombi Brook and from its tributaries during flood recession (Mar-01) and under baseflow conditions (Oct-01). Alluvial groundwater was sampled from a piezometer network and regional groundwater from deeper bores in the lower to mid-catchment biannually over two years to characterise these potential sources of water to stream flow. Chloride identified specific reaches of the catchment that were either subjected to evaporation or received regional groundwater contributions to stream flow. The water isotopes verified which of these reaches were dominated by evaporation versus groundwater contributions. They also revealed that the predominant sources of water to stream flow during flood recession were either rainfall and storm runoff or regional groundwater, and that during baseflow the predominant source of water to stream flow was alluvial groundwater. Radon showed that there was a greater proportion of groundwater contributing to stream flow in the upper part of the catchment than the lower catchment during both flood recession and baseflow. Strontium isotopes showed that regional groundwater contributed less than 10% to stream flow in all parts of the catchment under baseflow conditions.

Reconstructing the Dwarf Galaxy Progenitor from Tidal Streams Using MilkyWay@home

NASA Astrophysics Data System (ADS)

Newberg, Heidi; Shelton, Siddhartha

2018-04-01

We attempt to reconstruct the mass and radial profile of stars and dark matter in the dwarf galaxy progenitor of the Orphan Stream, using only information from the stars in the Orphan Stream. We show that given perfect data and perfect knowledge of the dwarf galaxy profile and Milky Way potential, we are able to reconstruct the mass and radial profiles of both the stars and dark matter in the progenitor to high accuracy using only the density of stars along the stream and either the velocity dispersion or width of the stream in the sky. To perform this test, we simulated the tidal disruption of a two component (stars and dark matter) dwarf galaxy along the orbit of the Orphan Stream. We then created a histogram of the density of stars along the stream and a histogram of either the velocity dispersion or width of the stream in the sky as a function of position along the stream. The volunteer supercomputer MilkyWay@home was given these two histograms, the Milky Way potential model, and the orbital parameters for the progenitor. N-body simulations were run, varying dwarf galaxy parameters and the time of disruption. The goodness-of-fit of the model to the data was determined using an Earth-Mover Distance algorithm. The parameters were optimized using Differential Evolution. Future work will explore whether currently available information on the Orphan Stream stars is sufficient to constrain its progenitor, and how sensitive the optimization is to our knowledge of the Milky Way potential and the density model of the dwarf galaxy progenitor, as well as a host of other real-life unknowns.

Plot- and landscape-level changes in climate and vegetation following defoliation of exotic saltcedar (Tamarix sp.) from the biocontrol agent Diorhabda carinulata along a stream in the Mojave Desert (USA)

USGS Publications Warehouse

Bateman, H.L.; Nagler, P.L.; Glenn, E.P.

2013-01-01

The biocontrol agent, northern tamarisk beetle (Diorhabda carinulata), has been used to defoliate non-native saltcedar (Tamarix spp.) in USA western riparian systems since 2001. Biocontrol has the potential to impact biotic communities and climatic conditions in affected riparian areas. To determine the relationships between biocontrol establishment and effects on vegetation and climate at the plot and landscape scales, we measured temperature, relative humidity, foliage canopy, solar radiation, and used satellite imagery to assess saltcedar defoliation and evapotranspiration (ET) along the Virgin River in the Mojave Desert. Following defoliation solar radiation increased, daily humidity decreased, and maximum daily temperatures tended to increase. MODIS and Landsat satellite imagery showed defoliation was widespread, resulting in reductions in ET and vegetation indices. Because biocontrol beetles are spreading into new saltcedar habitats on arid western rivers, and the eventual equilibrium between beetles and saltcedar is unknown, it is necessary to monitor trends for ecosystem functions and higher trophic-level responses in habitats impacted by biocontrol.

The effects of sperminated pullulans on cornea permeability to puerarin and the toxicity.

PubMed

Yu, Nannan; Dong, Guo; Ge, Hongyan; Jin, Di; Cui, Hao; Liu, Ping

2012-10-01

To investigate the varied effects of sperminated pullulans (SP) with different amino residues on cornea permeability and its local toxicity. Three groups of rabbits were used: control, low-amino residue content SP (SP-L), and high-amino residue content SP (SP-H). The in vitro and in vivo spreading assays were combined with high performance liquid chromatography (HPLC) to measure the concentration of puerarin in the external medium or aqueous humor when 0% SP, 0.2% SP-L, and 0.2% SP-H were included. The toxicity of SP was determined by corneal hydration values, Draize score, aqueous humor protein concentration, corneal endothelial evaluation, as well as light microscopy and electron microscopy. The application of 0.2% SP-L and 0.2% SP-H to the cornea in vitro increased puerarin apparent permeability coefficient by 1.96-fold (P<0.05) and 2.95-fold (P<0.01), respectively. SP-H showed stronger effect than SP-L (P<0.05). For the in vivo assay, those were 1.81-fold (P<0.05) and 3.71-fold (P<0.01), respectively. With the SP application, the corneal hydration values were <83% and Draize scores were <4, with no apparent changes in histological observations. SP is one potential adjuvant promoting puerarin permeability to the cornea, and the high-content amino residue SP showed stronger effect, without ocular toxicity.

Assessing metal pollution in ponds constructed for controlling runoff from reclaimed coal mines.

PubMed

Miguel-Chinchilla, Leticia; González, Eduardo; Comín, Francisco A

2014-08-01

Constructing ponds to protect downstream ecosystems is a common practice in opencast coal mine reclamation. As these ponds remain integrated in the landscape, it is important to evaluate the extent of the effect of mine pollution on these ecosystems. However, this point has not been sufficiently addressed in the literature. The main objective of this work was to explore the metal pollution in man-made ponds constructed for runoff control in reclaimed opencast coal mines over time. To do so, we evaluated the concentration of ten heavy metals in the water, sediment, and Typha sp. in 16 runoff ponds ranging from 1 to 19 years old that were constructed in reclaimed opencast coal mines of northeastern Spain. To evaluate degree of mining pollution, we compared these data to those from a pit lake created in a local unreclaimed mine and to local streams as an unpolluted reference, as well as comparing toxicity levels in aquatic organisms. The runoff ponds showed toxic concentrations of Al, Cu, and Ni in the water and As and Ni in the sediment, which were maintained over time. Metal concentrations in runoff ponds were higher than in local streams, and macrophytes showed high metal concentrations. Nevertheless, metal concentrations in water and sediment in runoff ponds were lower than those in the pit lake. This study highlights the importance of mining reclamation to preserve the health of aquatic ecosystems and suggests the existence of chronic metal toxicity in the ponds, potentially jeopardizing pond ecological functions and services.

Requirement of ABC transporter inhibition and Hoechst 33342 dye deprivation for the assessment of side population-defined C6 glioma stem cell metabolism using fluorescent probes.

PubMed

Murota, Yoshitaka; Tabu, Kouichi; Taga, Tetsuya

2016-11-04

Elucidating the precise properties of cancer stem cells (CSCs) is indispensable for the development of effective therapies against tumors, because CSCs are key drivers of tumor development, metastasis and relapse. We previously reported that the Hoechst 33342 dye-low staining side population (SP) method can enrich for CSCs in the C6 glioma cell line, and that the positively stained main population (MP) cells are non-CSCs. Presence of cancer stem-like SP cells is reported in various types of cancer. Although altered cellular energy metabolism is a hallmark of cancer, very little has been studied on the applicability of fluorescent probes for the understanding of CSC energy metabolism. The metabolic status of C6 SP and MP cells are evaluated by CellROX, MitoTracker Green (MTG) and JC-1 for cellular oxidative stress, mitochondrial amount, and mitochondrial membrane potential, respectively. SP cells were found to exhibit significantly lower fluorescent intensities of CellROX and MTG than MP cells. However, inhibition of ATP binding cassette (ABC) transporters by verapamil enhanced the intensities of these probes in SP cells to the levels similar to those in MP cells, indicating that SP cells expel the probes outside of the cells through ABC transporters. Next, SP cells were stained with JC-1 dye which exhibits membrane potential dependent accumulation in mitochondrial matrix, followed by formation of aggregates. The mitochondrial membrane potential indicated by the aggregates of JC-1 was 5.0-fold lower in SP cells than MP cells. Inhibition of ABC transporters enhanced the fluorescent intensities of the JC-1 aggregates in both SP and MP cells, the former of which was still 2.2-fold lower than the latter. This higher JC-1 signal in MP cells was further found to be due to the Hoechst 33342 dye existing in MP cells. When SP and MP cells were recultured to deprive the intracellular Hoechst 33342 dye and then stained with JC-1 in the presence of verapamil, the intensities of JC-1 aggregates in such SP and MP cells became comparable. Inhibiting ABC transporters and depriving Hoechst 33342 dye are required for the accurate assessment of side population-defined C6 glioma stem cell metabolism using fluorescent probes.

Gibberellin-producing Promicromonospora sp. SE188 improves Solanum lycopersicum plant growth and influences endogenous plant hormones.

PubMed

Kang, Sang-Mo; Khan, Abdul Latif; Hamayun, Muhammad; Hussain, Javid; Joo, Gil-Jae; You, Young-Hyun; Kim, Jong-Guk; Lee, In-Jung

2012-12-01

Plant growth-promoting rhizobacteria (PGPR) producing gibberellins (GAs) can be beneficial to plant growth and development. In the present study, we isolated and screened a new strain of Promicromonospora sp., SE188, isolated from soil. Promicromonospora sp. SE188 secreted GAs into its growth medium and exhibited phosphate solubilization potential. The PGPR produced physiologically active (GA(1) and GA(4)) and inactive (GA(9), GA(12), GA(19), GA(20), GA(24), GA(34), and GA(53)) GAs in various quantities detected by GC/MS-SIM. Solanum lycopersicum (tomato) plants inoculated with Promicromonospora sp. SE188 showed a significantly higher shoot length and biomass as compared to controls where PGPR-free nutrient broth (NB) and distilled water (DW) were applied to plants. The presence of Promicromonospora sp. SE188 significantly up-regulated the non C-13 hydroxylation GA biosynthesis pathway (GA(12)→GA(24)→GA(9)→GA(4)→ GA(34)) in the tomato plants as compared to the NB and DW control plants. Abscisic acid, a plant stress hormone, was significantly down-regulated in the presence of Promicromonospora sp. SE188. Contrarily, salicylic acid was significantly higher in the tomato plant after Promicromonospora sp. SE188 inoculation as compared to the controls. Promicromonospora sp. SE188 showed promising stimulation of tomato plant growth. From the results it appears that Promicromonospora sp. SE188 has potential as a bio-fertilizer and should be more broadly tested in field trials for higher crop production in eco-friendly farming systems.

Isolation of Potential Bacteria as Inoculum for Biofloc Formation in Pacific Whiteleg Shrimp, Litopenaeus vannamei Culture Ponds.

PubMed

Kasan, Nor Azman; Ghazali, Nurarina Ayuni; Ikhwanuddin, Mhd; Ibrahim, Zaharah

2017-01-01

A new green technology to reduce environmental damages while optimizing production of Pacific Whiteleg shrimp, Litopenaeus vannamei was developed known as "Biofloc technology". Microbial communities in biofloc aggregates are responsible in eliminating water exchange and producing microbial proteins that can be used as supplemented feed for L. vannamei. This study aimed to isolate and identify potential bioflocculant-producing bacteria to be used as inoculum for rapid formation of biofloc. For the purpose of this study, bacterial communities during 0, 30 and 70 days of culture (DOC) of L. vannamei grow-out ponds were isolated and identified through phenotypic and 16S rDNA sequences analysis. Phylogenetic relationships between isolated bacteria were then evaluated through phylogenetic tree analysis. One-way analysis of variance (ANOVA) was used to compare the differences of microbial communities at each DOC. Out of 125 bacterial isolates, nine species of bacteria from biofloc were identified successfully. Those bacteria species were identified as Halomonas venusta, H. aquamarina, Vibrio parahaemolyticus, Bacillus infantis, B. cereus, B. safensis, Providencia vermicola, Nitratireductor aquimarinus and Pseudoalteromonas sp., respectively. Through phylogenetic analysis, these isolates belong to Proteobacteria and Firmicutes families under the genera of Halomonas sp., Vibrio sp., Bacillus sp., Providencia sp., Nitratireductor sp. and Pseudoalteromonas sp. In this study, bioflocculant-producing bacteria were successfully identified which are perfect candidates in forming biofloc to reduce water pollution towards a sustainable aquaculture industry. Presence of Halomonas sp. and Bacillus sp. in all stages of biofloc formation reinforces the need for new development regarding the ability of these species to be used as inoculum in forming biofloc rapidly.

Potential Role of Diploscapter sp. Strain LKC25, a Bacterivorous Nematode from Soil, as a Vector of Food-Borne Pathogenic Bacteria to Preharvest Fruits and Vegetables

PubMed Central

Gibbs, Daunte S.; Anderson, Gary L.; Beuchat, Larry R.; Carta, Lynn K.; Williams, Phillip L.

2005-01-01

Diploscapter, a thermotolerant, free-living soil bacterial-feeding nematode commonly found in compost, sewage, and agricultural soil in the United States, was studied to determine its potential role as a vehicle of Salmonella enterica serotype Poona, enterohemorrhagic Escherichia coli O157:H7, and Listeria monocytogenes in contaminating preharvest fruits and vegetables. The ability of Diploscapter sp. strain LKC25 to survive on agar media, in cow manure, and in composted turkey manure and to be attracted to, ingest, and disperse food-borne pathogens inoculated into soil or a mixture of soil and composted turkey manure was investigated. Diploscapter sp. strain LKC25 survived and reproduced in lawns of S. enterica serotype Poona, E. coli O157:H7, and L. monocytogenes on agar media and in cow manure and composted turkey manure. Attraction of Diploscapter sp. strain LKC25 to colonies of pathogenic bacteria on tryptic soy agar within 10, 20, 30, and 60 min and 24 h was determined. At least 85% of the worms initially placed 0.5 to 1 cm away from bacterial colonies migrated to the colonies within 1 h. Within 24 h, ≥90% of the worms were embedded in colonies. The potential of Diploscapter sp. strain LKC25 to shed pathogenic bacteria after exposure to bacteria inoculated into soil or a mixture of soil and composted turkey manure was investigated. Results indicate that Diploscapter sp. strain LKC25 can shed pathogenic bacteria after exposure to pathogens in these milieus. They also demonstrate its potential to serve as a vector of food-borne pathogenic bacteria in soil, with or without amendment with compost, to the surface of preharvest fruits and vegetables in contact with soil. PMID:15870330

Ecological risk assessment of the antibiotic enrofloxacin applied to Pangasius catfish farms in the Mekong Delta, Vietnam.

PubMed

Andrieu, Margot; Rico, Andreu; Phu, Tran Minh; Huong, Do Thi Thanh; Phuong, Nguyen Thanh; Van den Brink, Paul J

2015-01-01

Antibiotics applied in aquaculture production may be released into the environment and contribute to the deterioration of surrounding aquatic ecosystems. In the present study, we assessed the ecological risks posed by the use of the antibiotic enrofloxacin (ENR), and its main metabolite ciprofloxacin (CIP), in a Pangasius catfish farm in the Mekong Delta region, Vietnam. Water and sediment samples were collected in a stream receiving effluents from a Pangasius catfish farm that had applied ENR. The toxicity of ENR and CIP was assessed on three tropical aquatic species: the green-algae Chlorella sp. (72 h - growth inhibition test), the micro-invertebrate Moina macrocopa (48 h - immobilization test), and the Nile tilapia (Oreochromis niloticus). The toxic effects on O. niloticus were evaluated by measuring the cholinesterase (ChE) and catalase (CAT) activities in the fish brain and muscles, respectively, and by considering feed exposure and water exposure separately. Ecological risks were assessed by comparing maximum exposure concentrations with predicted no effect concentrations for cyanobacteria, green algae, invertebrates and fish derived with available toxicity data. The results of this study showed that maximum antibiotic concentrations in Pangasius catfish farm effluents were 0.68 μg L(-1) for ENR and 0.25 μg L(-1) for CIP (dissolved water concentrations). Antibiotics accumulated in sediments down-stream the effluent discharge point at concentrations up to 2590 μg kg(-1) d.w. and 592 μg kg(-1) d.w. for ENR and CIP, respectively. The calculated EC50 values for ENR and CIP were 111000 and 23000 μg L(-1) for Chlorella sp., and 69000 and 71000 μg L(-1) for M. macrocopa, respectively. Significant effects on the ChE and CAT enzymatic activities of O. niloticus were observed at 5 g kg(-1) feed and 400-50000 μg L(-1), for both antibiotics. The results of the ecological risk assessment performed in this study indicated only minor risks for cyanobacteria communities, suggesting that residual concentrations of ENR and CIP after medication are not likely to result in severe toxic effects on exposed aquatic ecosystems. However, more studies should be performed by considering other antibiotic treatments used in Pangasius catfish production and the potential ecotoxicological effects of relevant antibiotic mixtures on sediment communities. Copyright © 2014 Elsevier Ltd. All rights reserved.

Neural and receptor cochlear potentials obtained by transtympanic electrocochleography in auditory neuropathy.

PubMed

Santarelli, Rosamaria; Starr, Arnold; Michalewski, Henry J; Arslan, Edoardo

2008-05-01

Transtympanic electrocochleography (ECochG) was recorded bilaterally in children and adults with auditory neuropathy (AN) to evaluate receptor and neural generators. Test stimuli were clicks from 60 to 120dB p.e. SPL. Measures obtained from eight AN subjects were compared to 16 normally hearing children. Receptor cochlear microphonics (CMs) in AN were of normal or enhanced amplitude. Neural compound action potentials (CAPs) and receptor summating potentials (SPs) were identified in five AN ears. ECochG potentials in those ears without CAPs were of negative polarity and of normal or prolonged duration. We used adaptation to rapid stimulus rates to distinguish whether the generators of the negative potentials were of neural or receptor origin. Adaptation in controls resulted in amplitude reduction of CAP twice that of SP without affecting the duration of ECochG potentials. In seven AN ears without CAP and with prolonged negative potential, adaptation was accompanied by reduction of both amplitude and duration of the negative potential to control values consistent with neural generation. In four ears without CAP and with normal duration potentials, adaptation was without effect consistent with receptor generation. In five AN ears with CAP, there was reduction in amplitude of CAP and SP as controls but with a significant decrease in response duration. Three patterns of cochlear potentials were identified in AN: (1) presence of receptor SP without CAP consistent with pre-synaptic disorder of inner hair cells; (2) presence of both SP and CAP consistent with post-synaptic disorder of proximal auditory nerve; (3) presence of prolonged neural potentials without a CAP consistent with post-synaptic disorder of nerve terminals. Cochlear potential measures may identify pre- and post-synaptic disorders of inner hair cells and auditory nerves in AN.

Machine learning and hurdle models for improving regional predictions of stream water acid neutralizing capacity

Treesearch

Nicholas A. Povak; Paul F. Hessburg; Keith M. Reynolds; Timothy J. Sullivan; Todd C. McDonnell; R. Brion Salter

2013-01-01

In many industrialized regions of the world, atmospherically deposited sulfur derived from industrial, nonpoint air pollution sources reduces stream water quality and results in acidic conditions that threaten aquatic resources. Accurate maps of predicted stream water acidity are an essential aid to managers who must identify acid-sensitive streams, potentially...

Stream Classification Tool User Manual: For Use in Applications in Hydropower-Related Evironmental Mitigation

DOE Office of Scientific and Technical Information (OSTI.GOV)

McManamay, Ryan A.; Troia, Matthew J.; DeRolph, Christopher R.

Stream classifications are an inventory of different types of streams. Classifications help us explore similarities and differences among different types of streams, make inferences regarding stream ecosystem behavior, and communicate the complexities of ecosystems. We developed a nested, layered, and spatially contiguous stream classification to characterize the biophysical settings of stream reaches within the Eastern United States (~ 900,000 reaches). The classification is composed of five natural characteristics (hydrology, temperature, size, confinement, and substrate) along with several disturbance regime layers, and each was selected because of their relevance to hydropower mitigation. We developed the classification at the stream reach levelmore » using the National Hydrography Dataset Plus Version 1 (1:100k scale). The stream classification is useful to environmental mitigation for hydropower dams in multiple ways. First, it creates efficiency in the regulatory process by creating an objective and data-rich means to address meaningful mitigation actions. Secondly, the SCT addresses data gaps as it quickly provides an inventory of hydrology, temperature, morphology, and ecological communities for the immediate project area, but also surrounding streams. This includes identifying potential reference streams as those that are proximate to the hydropower facility and fall within the same class. These streams can potentially be used to identify ideal environmental conditions or identify desired ecological communities. In doing so, the stream provides some context for how streams may function, respond to dam regulation, and an overview of specific mitigation needs. Herein, we describe the methodology in developing each stream classification layer and provide a tutorial to guide applications of the classification (and associated data) in regulatory settings, such as hydropower (re)licensing.« less

Characterization of focused seepage through an earthfill dam using geoelectrical methods.

PubMed

Ikard, S J; Revil, A; Schmutz, M; Karaoulis, M; Jardani, A; Mooney, M

2014-01-01

Resistivity and self-potential tomography can be used to investigate anomalous seepage inside heterogeneous earthen dams. The self-potential (SP) signals provide a unique signature to groundwater flow because the source current density responsible for the SP signals is proportional to the Darcy velocity. The distribution of the SP signals is also influenced by the distribution of the resistivity; therefore, resistivity and SP need to be used in concert to elucidate groundwater flow pathways. In this study, a survey is conducted at a small earthen dam in Colorado where anomalous seepage is observed on the downstream face at the dam toe. The data reveal SP and direct current resistivity anomalies that are used to delineate three anomalous seepage zones within the dam and to estimate the source of the localized seepage discharge. The SP data are inverted in two dimensions using the resistivity distribution to determine the distribution of the Darcy velocity responsible for the observed seepage. The inverted Darcy velocity agrees with an estimation of the Darcy velocity from the hydraulic conductivity obtained from a slug test and the observed head gradient. © 2013, National Ground Water Association.

Taxonomic and Functional Differences between Microbial Communities in Qinghai Lake and Its Input Streams

PubMed Central

Ren, Ze; Wang, Fang; Qu, Xiaodong; Elser, James J.; Liu, Yang; Chu, Limin

2017-01-01

Understanding microbial communities in terms of taxon and function is essential to decipher the biogeochemical cycling in aquatic ecosystems. Lakes and their input streams are highly linked. However, the differences between microbial assemblages in streams and lakes are still unclear. In this study, we conducted an intensive field sampling of microbial communities from lake water and stream biofilms in the Qinghai Lake watershed, the largest lake in China. We determined bacterial communities using high-throughput 16S rRNA gene sequencing and predicted functional profiles using PICRUSt to determine the taxonomic and functional differences between microbial communities in stream biofilms and lake water. The results showed that stream biofilms and lake water harbored distinct microbial communities. The microbial communities were different taxonomically and functionally between stream and lake. Moreover, streams biofilms had a microbial network with higher connectivity and modularity than lake water. Functional beta diversity was strongly correlated with taxonomic beta diversity in both the stream and lake microbial communities. Lake microbial assemblages displayed greater predicted metabolic potentials of many metabolism pathways while the microbial assemblages in stream biofilms were more abundant in xenobiotic biodegradation and metabolism and lipid metabolism. Furthermore, lake microbial assemblages had stronger predicted metabolic potentials in amino acid metabolism, carbon fixation, and photosynthesis while stream microbial assemblages were higher in carbohydrate metabolism, oxidative phosphorylation, and nitrogen metabolism. This study adds to our knowledge of stream-lake linkages from the functional and taxonomic composition of microbial assemblages. PMID:29213266

Genotoxicity and osteogenic potential of sulfated polysaccharides from Caulerpa prolifera seaweed.

PubMed

Chaves Filho, Gildácio Pereira; de Sousa, Angélica Fernandes Gurgel; Câmara, Rafael Barros Gomes; Rocha, Hugo Alexandre Oliveira; de Medeiros, Silvia Regina Batistuzzo; Moreira, Susana Margarida Gomes

2018-07-15

Marine algae are sources of novel bioactive molecules and present a great potential for biotechnological and biomedical applications. Although green algae are the least studied type of seaweed, several of their biological activities have already been described. Here, we investigated the osteogenic potential of Sulfated Polysaccharide (SP)-enriched samples extracted from the green seaweed Caulerpa prolifera on human mesenchymal stem cells isolated from Wharton jelly (hMSC-WJ). In addition, the potential genotoxicity of these SPs was determined by cytokinesis-block micronucleus (CBMN) assay. SP-enriched samples did not show significant cytotoxicity towards hMSCs-WJ at a concentration of up to 10μg/mL, and after 72h of exposure. SP enrichment also significantly increased alkaline phosphatase (ALP) activity, promoting calcium accumulation in the extracellular matrix. Among the SP-enriched samples, the CP0.5 subfraction (at 5μg/mL) presented the most promising results. In this sample, ALP activity was increased approximately by 60%, and calcium accumulation was approximately 6-fold above the negative control, indicating high osteogenic potential. This subfraction also proved to be non-genotoxic, according to the CBMN assay, as it did not induce micronuclei. The results of this study highlight, for the first time, the potential of these SPs for the development of new therapies for bone regeneration. Copyright © 2018 Elsevier B.V. All rights reserved.

Citrinamides, new potentiators of antifungal miconazole activity, produced by Penicillium sp. FKI-1938.

PubMed

Fukuda, Takashi; Hasegawa, Yoko; Sakabe, Yasunari; Tomoda, Hiroshi; Omura, Satoshi

2008-09-01

Two new aromatic alkaloids, designated citrinamides A and B, were isolated from the culture broth of Penicillium sp. FKI-1938 by solvent extraction, silica gel column chromatography and HPLC. Their structures were elucidated by spectroscopic analysis, including NMR and amino acid analysis. Citrinamides A and B showed moderate potentiation of miconazole activity against Candida albicans.

ANALYSIS OR THE POTENTIAL SPERM BIOMARKER, SP22, IN HUMAN SEMEN

EPA Science Inventory

ANALYSIS OF THE POTENTIAL SPERM BIOMARKER SP22 IN HUMAN SEMEN
Rebecca A. Morris Ph.D.1, Gary R. Klinefelter Ph.D.1, Naomi L. Roberts 1, Juan D. Suarez 1,
Lillian F. Strader 1, Susan C. Jeffay 1 and Sally D. Perreault Ph.D.1

1 U.S. EPA / ORD / National Health a...

The Extent of Active Processing of a Long-Duration Stimulus Modulates the Scalp-Recorded Sustained Potential

ERIC Educational Resources Information Center

Campbell, Kenneth; Herzig, Alyssa; Jashmidi, Parastoo

2009-01-01

A long-duration stimulus will elicit a negative sustained potential (SP) that is maximum in amplitude over fronto-central areas of the scalp. This study examines how the duration of active attentional processing of the stimulus might also elicit a nonsensory contingent negative variation (CNV) that overlaps and summates to the SP. Subjects were…

[Parasites of zoonotic importance in dog feces collected in parks and public squares of the city of Los Angeles, Bío-Bío, Chile].

PubMed

Luzio, Álvaro; Belmar, Pablo; Troncoso, Ignacio; Luzio, Patricia; Jara, Alexis; Fernández, Ítalo

2015-08-01

The contamination of public squares and parks with dog feces poses a risk to the population, since it may contain parasitic elements of zoonotic importance. To identify human pathogenic parasites in samples of dog feces collected from parks and public squares. 452 fecal dog samples collected from 65 squares and public parks were analyzed using the technique of Burrows. 60% (39/65) of the samples contained some parasitic forms with a zoonotic potential. Parasitic taxa with zoonotic risk were Toxocara sp., Ancylostoma sp., Dipylidium caninum, Giardia sp., Taenia sp., Toxascaris sp., Strongyloides sp., and Uncinaria sp. The detected parasites present a risk to human health, so it seems necessary to implement health education activities in the community, develop deworming plans, and control the canine overpopulation.

Persistent activity in a recurrent circuit underlies courtship memory in Drosophila.

PubMed

Zhao, Xiaoliang; Lenek, Daniela; Dag, Ugur; Dickson, Barry J; Keleman, Krystyna

2018-01-11

Recurrent connections are thought to be a common feature of the neural circuits that encode memories, but how memories are laid down in such circuits is not fully understood. Here we present evidence that courtship memory in Drosophila relies on the recurrent circuit between mushroom body gamma (MBγ), M6 output, and aSP13 dopaminergic neurons. We demonstrate persistent neuronal activity of aSP13 neurons and show that it transiently potentiates synaptic transmission from MBγ>M6 neurons. M6 neurons in turn provide input to aSP13 neurons, prolonging potentiation of MB γ >M6 synapses over time periods that match short-term memory. These data support a model in which persistent aSP13 activity within a recurrent circuit lays the foundation for a short-term memory. © 2018, Zhao et al.

Persistent activity in a recurrent circuit underlies courtship memory in Drosophila

PubMed Central

Zhao, Xiaoliang; Lenek, Daniela; Dag, Ugur; Dickson, Barry J

2018-01-01

Recurrent connections are thought to be a common feature of the neural circuits that encode memories, but how memories are laid down in such circuits is not fully understood. Here we present evidence that courtship memory in Drosophila relies on the recurrent circuit between mushroom body gamma (MBγ), M6 output, and aSP13 dopaminergic neurons. We demonstrate persistent neuronal activity of aSP13 neurons and show that it transiently potentiates synaptic transmission from MBγ>M6 neurons. M6 neurons in turn provide input to aSP13 neurons, prolonging potentiation of MBγ>M6 synapses over time periods that match short-term memory. These data support a model in which persistent aSP13 activity within a recurrent circuit lays the foundation for a short-term memory. PMID:29322941

Whole-stream response to nitrate loading in three streams draining agricultural landscapes

USGS Publications Warehouse

Duff, J.H.; Tesoriero, A.J.; Richardson, W.B.; Strauss, E.A.; Munn, M.D.

2008-01-01

Physical, chemical, hydrologic, and biologic factors affecting nitrate (NO3 −) removal were evaluated in three agricultural streams draining orchard/dairy and row crop settings. Using 3-d “snapshots” during biotically active periods, we estimated reach-level NO3 − sources, NO3 − mass balance, in-stream processing (nitrification, denitrification, and NO3 − uptake), and NO3 − retention potential associated with surface water transport and ground water discharge. Ground water contributed 5 to 11% to stream discharge along the study reaches and 8 to 42% of gross NO3 − input. Streambed processes potentially reduced 45 to 75% of ground water NO3 − before discharge to surface water. In all streams, transient storage was of little importance for surface water NO3 − retention. Estimated nitrification (1.6–4.4 mg N m−2 h−1) and unamended denitrification rates (2.0–16.3 mg N m−2 h−1) in sediment slurries were high relative to pristine streams. Denitrification of NO3 − was largely independent of nitrification because both stream and ground water were sources of NO3 − Unamended denitrification rates extrapolated to the reach-scale accounted for <5% of NO3 − exported from the reaches minimally reducing downstream loads. Nitrate retention as a percentage of gross NO3 − inputs was >30% in an organic-poor, autotrophic stream with the lowest denitrification potentials and highest benthic chlorophyll a, photosynthesis/respiration ratio, pH, dissolved oxygen, and diurnal NO3 − variation. Biotic processing potentially removed 75% of ground water NO3 − at this site, suggesting an important role for photosynthetic assimilation of ground water NO3 − relative to subsurface denitrification as water passed directly through benthic diatom beds.

Habitat characterization and spatial distribution of Anopheles sp. mosquito larvae in Dar es Salaam (Tanzania) during an extended dry period

PubMed Central

Sattler, Michael A; Mtasiwa, Deo; Kiama, Michael; Premji, Zul; Tanner, Marcel; Killeen, Gerry F; Lengeler, Christian

2005-01-01

Introduction By 2030, more than 50% of the African population will live in urban areas. Controlling malaria reduces the disease burden and further improves economic development. As a complement to treated nets and prompt access to treatment, measures targeted against the larval stage of Anopheles sp. mosquitoes are a promising strategy for urban areas. However, a precise knowledge of the geographic location and potentially of ecological characteristics of breeding sites is of major importance for such interventions. Methods In total 151 km2 of central Dar es Salaam, the biggest city of Tanzania, were systematically searched for open mosquito breeding sites. Ecologic parameters, mosquito larvae density and geographic location were recorded for each site. Logistic regression analysis was used to determine the key ecological factors explaining the different densities of mosquito larvae. Results A total of 405 potential open breeding sites were examined. Large drains, swamps and puddles were associated with no or low Anopheles sp. larvae density. The probability of Anopheles sp. larvae to be present was reduced when water was identified as "turbid". Small breeding sites were more commonly colonized by Anopheles sp. larvae. Further, Anopheles gambiae s.l. larvae were found in highly organically polluted habitats. Conclusions Clear ecological characteristics of the breeding requirements of Anopheles sp. larvae could not be identified in this setting. Hence, every stagnant open water body, including very polluted ones, have to be considered as potential malaria vector breeding sites. PMID:15649333

Observations on cucullanid nematodes from freshwater fishes in Mexico, including Dichelyne mexicanus sp. n.

PubMed

Caspeta-Mandujano, J M; Moravec, F; Salgado-Maldonado, G

1999-01-01

A new cucullanid nematode, Dichelyne mexicanus sp. n., is described from the intestine of three species of fishes, Agonostomus monticola (Bancroft) (Mugilidae, Perciformes) (type host), Ictalurus balsanus (Jordan et Snyder) (Ictaluridae, Siluriformes) and Cichlasoma beani (Jordan) (Cichlidae, Perciformes), from three rivers (La Maquina River, Veracruz; Chontalcoatlán River, Guerrero and Santiago River, Nayarit) in central Mexico. This species is characterised by the absence of a ventral sucker in the male (subgenus Dichelyne) and it differs from its congeners mainly in possessing very unequal and dissimilar spicules (left 0.465-0.768 mm and right 293-548 mm long), an asymmetrical gubernaculum, and two intestinal caeca. Another cucullanid nematode, Cucullanus caballeroi Petter, 1977, is reported from Dormitator maculatus (Bloch) (Eleotridae, Perciformes) from the La Palma and La Maquina Rivers and Balzapote stream, Veracruz, being briefly described and illustrated; this represents a new host record. Findings of D. mexicanus and C. caballeroi represent a new record of cucullanid nematodes from fishes in Mexican fresh waters.

Ion Streaming Instabilities in Pair Ion Plasma and Localized Structure with Non-Thermal Electrons

NASA Astrophysics Data System (ADS)

Nasir Khattak, M.; Mushtaq, A.; Qamar, A.

2015-12-01

Pair ion plasma with a fraction of non-thermal electrons is considered. We investigate the effects of the streaming motion of ions on linear and nonlinear properties of unmagnetized, collisionless plasma by using the fluid model. A dispersion relation is derived, and the growth rate of streaming instabilities with effect of streaming motion of ions and non-thermal electrons is calculated. A qausi-potential approach is adopted to study the characteristics of ion acoustic solitons. An energy integral equation involving Sagdeev potential is derived during this process. The presence of the streaming term in the energy integral equation affects the structure of the solitary waves significantly along with non-thermal electrons. Possible application of the work to the space and laboratory plasmas are highlighted.

The Marine Fungi Rhodotorula sp. (Strain CNYC4007) as a Potential Feed Source for Fish Larvae Nutrition

PubMed Central

Barra, M.; Llanos-Rivera, A.; Cruzat, F.; Pino-Maureira, N.; González-Saldía, R. R.

2017-01-01

Fish oil is used in the production of feed for cultured fish owing to its high polyunsaturated fatty acid content (PUFA). The over-exploitation of fisheries and events like “El Niño” are reducing the fish oil supply. Some marine microorganisms are considered potentially as alternative fatty acid sources. This study assesses a strain of Rhodotorula sp. (strain CNYC4007; 27% docosahexaenoic acid (DHA) of total fatty acids), as feed for fish larvae. The total length and ribonucleic acid (RNA)/deoxyribonucleic acid (DNA) ratio of Danio rerio larvae was determined at first feeding at six and 12 days old (post-yolk absorption larvae). Larvae fed with microencapsulated Rhodotorula sp. CNYC4007 had a significantly higher RNA/DNA ratio than control group (C1). At six days post-yolk absorption group, the RNA/DNA ratio of larvae fed with Rhodotorula sp. bioencapsulated in Brachionus sp. was significantly higher than control group fed with a commercial diet high in DHA (C2-DHA). Finally, at 12 days post-yolk absorption, the RNA/DNA ratio was significantly higher in larvae fed with Rhodotorula sp. CNYC4007 and C2-DHA (both bioencapsulated in Artemia sp. nauplii) than in control group (C1). These results suggest that Rhodotorula sp. CNYC4007 can be an alternative source of DHA for feeding fish at larval stage, providing a sustainable source of fatty acids. PMID:29194350

Modeled intermittency risk for small streams in the Upper Colorado River Basin under climate change

USGS Publications Warehouse

Reynolds, Lindsay V.; Shafroth, Patrick B.; Poff, N. LeRoy

2015-01-01

Longer, drier summers projected for arid and semi-arid regions of western North America under climate change are likely to have enormous consequences for water resources and river-dependent ecosystems. Many climate change scenarios for this region involve decreases in mean annual streamflow, late summer precipitation and late-summer streamflow in the coming decades. Intermittent streams are already common in this region, and it is likely that minimum flows will decrease and some perennial streams will shift to intermittent flow under climate-driven changes in timing and magnitude of precipitation and runoff, combined with increases in temperature. To understand current intermittency among streams and analyze the potential for streams to shift from perennial to intermittent under a warmer climate, we analyzed historic flow records from streams in the Upper Colorado River Basin (UCRB). Approximately two-thirds of 115 gaged stream reaches included in our analysis are currently perennial and the rest have some degree of intermittency. Dry years with combinations of high temperatures and low precipitation were associated with more zero-flow days. Mean annual flow was positively related to minimum flows, suggesting that potential future declines in mean annual flows will correspond with declines in minimum flows. The most important landscape variables for predicting low flow metrics were precipitation, percent snow, potential evapotranspiration, soils, and drainage area. Perennial streams in the UCRB that have high minimum-flow variability and low mean flows are likely to be most susceptible to increasing streamflow intermittency in the future.

Negative effects of temperature and atmospheric depositions on the seed viability of common juniper (Juniperus communis).

PubMed

Gruwez, R; De Frenne, P; De Schrijver, A; Leroux, O; Vangansbeke, P; Verheyen, K

2014-02-01

Environmental change is increasingly impacting ecosystems worldwide. However, our knowledge about the interacting effects of various drivers of global change on sexual reproduction of plants, one of their key mechanisms to cope with change, is limited. This study examines populations of poorly regenerating and threatened common juniper (Juniperus communis) to determine the influence of four drivers of global change (rising temperatures, nitrogen deposition, potentially acidifying deposition and altering precipitation patterns) on two key developmental phases during sexual reproduction, gametogenesis and fertilization (seed phase two, SP2) and embryo development (seed phase three, SP3), and on the ripening time of seeds. In 42 populations throughout the distribution range of common juniper in Europe, 11,943 seeds of two developmental phases were sampled. Seed viability was determined using seed dissection and related to accumulated temperature (expressed as growing degree-days), nitrogen and potentially acidifying deposition (nitrogen plus sulfur), and precipitation data. Precipitation had no influence on the viability of the seeds or on the ripening time. Increasing temperatures had a negative impact on the viability of SP2 and SP3 seeds and decreased the ripening time. Potentially acidifying depositions negatively influenced SP3 seed viability, while enhanced nitrogen deposition led to lower ripening times. Higher temperatures and atmospheric deposition affected SP3 seeds more than SP2 seeds. However, this is possibly a delayed effect as juniper seeds develop practically independently, due to the absence of vascular communication with the parent plant from shortly after fertilization. It is proposed that the failure of natural regeneration in many European juniper populations might be attributed to climate warming as well as enhanced atmospheric deposition of nitrogen and sulfur.

Negative effects of temperature and atmospheric depositions on the seed viability of common juniper (Juniperus communis)

PubMed Central

Gruwez, R.; De Frenne, P.; De Schrijver, A.; Leroux, O.; Vangansbeke, P.; Verheyen, K.

2014-01-01

Background and Aims Environmental change is increasingly impacting ecosystems worldwide. However, our knowledge about the interacting effects of various drivers of global change on sexual reproduction of plants, one of their key mechanisms to cope with change, is limited. This study examines populations of poorly regenerating and threatened common juniper (Juniperus communis) to determine the influence of four drivers of global change (rising temperatures, nitrogen deposition, potentially acidifying deposition and altering precipitation patterns) on two key developmental phases during sexual reproduction, gametogenesis and fertilization (seed phase two, SP2) and embryo development (seed phase three, SP3), and on the ripening time of seeds. Methods In 42 populations throughout the distribution range of common juniper in Europe, 11 943 seeds of two developmental phases were sampled. Seed viability was determined using seed dissection and related to accumulated temperature (expressed as growing degree-days), nitrogen and potentially acidifying deposition (nitrogen plus sulfur), and precipitation data. Key Results Precipitation had no influence on the viability of the seeds or on the ripening time. Increasing temperatures had a negative impact on the viability of SP2 and SP3 seeds and decreased the ripening time. Potentially acidifying depositions negatively influenced SP3 seed viability, while enhanced nitrogen deposition led to lower ripening times. Conclusions Higher temperatures and atmospheric deposition affected SP3 seeds more than SP2 seeds. However, this is possibly a delayed effect as juniper seeds develop practically independently, due to the absence of vascular communication with the parent plant from shortly after fertilization. It is proposed that the failure of natural regeneration in many European juniper populations might be attributed to climate warming as well as enhanced atmospheric deposition of nitrogen and sulfur. PMID:24284814

Differential effects of C- and N-terminal substance P metabolites on the release of amino acid neurotransmitters from the spinal cord: potential role in nociception.

PubMed

Skilling, S R; Smullin, D H; Larson, A A

1990-04-01

Extensive evidence implicates Substance P [SP(1-11)] as a primary afferent neurotransmitter or modulator of nociceptive information, and there is increasing evidence that the excitatory amino acids aspartate (Asp) and glutamate (Glu) may also act as nociceptive neurotransmitters. We have previously demonstrated that nociceptive stimulation (metatarsal injection of formalin) caused a tetrodotoxin (TTX)-sensitive release of Asp and a TTX-insensitive release of Glu from the dorsal spinal cord. We have also shown release of Asp and Glu following the direct infusion of SP(1-11), suggesting that formalin-induced Asp or Glu changes could be secondary to an initial release of SP(1-11). In contrast to nociception, pretreatment with TTX, reported here, had no effect on the SP(1-11)-induced release of Asp, suggesting a presynaptic mechanism. Behavioral experiments, in both our laboratory, and others, now suggest that the N-terminal products of SP metabolism play a distinct role in the modulation of SP(1-11) nociception, possibly through an interaction with an opiate receptor. To test the hypothesis that N- and C-terminal fragments of SP produce opposite effects on biochemical events potentially involved in nociception, we compared the effects of infusion of the N-terminal metabolite SP(1-7) and the C-terminal metabolite SP(5-11) on changes in the ECF concentration of amino acids in the spinal cord as a measure of their apparent release, using microdialysis. Intradiaylsate infusion of SP(5-11) increased the release of Asp, Glu, asparagine (Asn), glycine (Gly), and taurine (Tau). The changes in Asp, Glu, and Tau were similar in direction and magnitude to changes produced by SP(1-11) or formalin injection, further supporting the hypothesis that the C-terminal is responsible for the nociceptive effects of SP(1-11). In contrast, infusion of SP(1-7) significantly decreased the release of Asn, Tau, Glu, and Gly. This inhibition of amino acid release is consistent with the hypothesis that N-terminal metabolites produce opposite effects to those of C-terminal metabolites of SP(1-11). The decreases in Glu, Asn, Gly, and Tau following SP(1-7) infusion were significantly reduced by i.p. or intradialysate naloxone. Systemic naloxone had no significant effects on the SP(5-11)-induced amino acid changes; however, it did inhibit the SP(1-11)-induced increase in Asp and Glu. Intradialysate naloxone had no effect on the SP(1-11)-induced increases.(ABSTRACT TRUNCATED AT 400 WORDS)

Groundtruthing and potential for predicting acid deposition impacts in headwater streams using bedrock geology, GIS, angling, and stream chemistry.

PubMed

Kirby, C S; McInerney, B; Turner, M D

2008-04-15

Atmospheric acid deposition is of environmental concern worldwide, and the determination of impacts in remote areas can be problematic. Rainwater in central Pennsylvania, USA, has a mean pH of approximately 4.4. Bedrock varies dramatically in its ability to neutralize acidity. A GIS database simplified reconnaissance of non-carbonate bedrock streams in the Valley and Ridge Province and identified potentially chronically impacted headwater streams, which were sampled for chemistry and brook trout. Stream sites (n=26) that originate in and flow through the Tuscarora had a median pH of 5.0 that was significantly different from other formations. Shawangunk streams (n=6) and non-Tuscarora streams (n=20) had a median pH of 6.0 and 6.3, respectively. Mean alkalinity for non-Tuscarora streams (2.6 mg/L CaCO(3)) was higher than the mean for Tuscarora streams (0.5 mg/L). Lower pH and alkalinity suggest that the buffering capability of the Tuscarora is inferior to that of adjacent sandstones. Dissolved aluminum concentrations were much higher for Tuscarora streams (0.2 mg/L; approximately the lethal limit for brook trout) than for non-Tuscarora streams (0.03 mg/L) or Shawangunk streams (0.02 mg/L). Hook-and-line methods determined the presence/absence of brook trout in 47 stream reaches with suitable habitat. Brook trout were observed in 21 of 22 non-Tuscarora streams, all 6 Shawangunk streams, and only 9 of 28 Tuscarora stream sites. Carefully-designed hook-and-line sampling can determine the presence or absence of brook trout and help confirm biological impacts of acid deposition. 15% of 334 km of Tuscarora stream lengths are listed as "impaired" due to atmospheric deposition by the Pennsylvania Department of Environmental Protection. 65% of the 101 km of Tuscarora stream lengths examined in this study were impaired.

Antimicrobial potential of Australian macrofungi extracts against foodborne and other pathogens.

PubMed

Bala, Neeraj; Aitken, Elizabeth A B; Cusack, Andrew; Steadman, Kathryn J

2012-03-01

Basidiomycetous macrofungi have therapeutic potential due to antimicrobial activity but little information is available for Australian macrofungi. Therefore, the present study investigated 12 Australian basidiomycetous macrofungi, previously shown to have promising activity against Staphylococcus aureus and Escherichia coli, for their antimicrobial potential against a range of other clinically relevant micro-organisms. Fruiting bodies were collected from across Queensland, Australia, freeze-dried and sequentially extracted with water and ethanol. The crude extracts were tested at 10 mg/mL and 1 mg/mL against six pathogens including two Gram-positive and two Gram-negative bacteria along with two fungi using a high throughput 96-well microplate bioassay. A degree of specificity in activity was exhibited by the water extract of Ramaria sp. (Gomphaceae) and the ethanol extracts of Psathyrella sp. (Psathyrellaceae) and Hohenbuehelia sp., which inhibited the growth of the two fungal pathogens used in the assay. Similarly, the ethanol extract of Fomitopsis lilacinogilva (Fomitopsidaceae) was active against the Gram-positive bacteria B. cereus only. Activity against a wider range of the microorganisms used in the assay was exhibited by the ethanol extract of Ramaria sp. and the water extract of Hohenbuehelia sp. (Pleurotaceae). These macrofungi can serve as new sources for the discovery and development of much needed new antimicrobials. Copyright © 2011 John Wiley & Sons, Ltd.

Assessment of swine-specific bacteriophages of Bacteroides fragilis in swine farms with different antibiotic practices.

PubMed

Leknoi, Yuranan; Mongkolsuk, Skorn; Sirikanchana, Kwanrawee

2017-04-01

We assessed the occurrence and specificity of bacteriophages of Bacteroides fragilis in swine farms for their potential application in microbial source tracking. A local B. fragilis host strain, SP25 (DSM29413), was isolated from a pooled swine feces sample taken from a non-antibiotic farm. This strain was highly specific to swine fecal materials because it did not detect bacteriophages in any samples from human sewage, sheep, goats, cattle, dogs, and cats. The reference B. fragilis strain, RYC2056, could detect phages in swine samples but also detected phages in most human sewage and polluted urban canal samples. Phages of SP25 exist in the proximity of certain swine farms, regardless of their antibiotic use (p > 0.05). B. fragilis strain SP25 exhibited relatively high resistance to most of the veterinary antimicrobial agents tested. Interestingly, most farms that were positive for SP25 phages were also positive for RYC2056 phages. In conclusion, the swine-specific SP25 strain has the potential to indicate swine fecal contamination in certain bodies of water. Bacterial isolates with larger distributions are being studied and validated. This study highlights the importance of assessing the abundance of phages in local swine populations before determining their potential applicability for source tracking in local surface waters.

Enkephalinase inhibitors potentiate tackykinin-induced release of /sup 35/SO/sub 4/-labeled macromolecules from ferret trachea

DOE Office of Scientific and Technical Information (OSTI.GOV)

Borson, D.B.; Gold, M.; Varsano, S.

1986-03-01

To study the roles of tachykinins and endogenous proteinases in regulating secretion from ferret tracheal glands, the authors measured the release of /sup 35/SO/sub 4/-labeled macromolecules after incubating segments of trachea in Ussing chambers in the presence of /sup 35/SO/sub 4/. 85% of the total macromolecular radioactivity was in fractions of molecular weights greater than or equal to 10/sup 6/. The response to substance P (SP) was concentration-dependent, with a threshold of 10/sup -9/ M, and responses to 10/sup -6/M and 10/sup -5/M of 87 +/- 9 and 156 +/- 26 pmol/cm/sup 2//h, respectively (n = 6 ea). The enkephalinasemore » inhibitor, thiorphan, increased the secretory response to SP (10/sup -6/M) in a concentration-dependent fashion, with a threshold of 10/sup -8/M, and a response to SP after 10/sup -4/M thiorphan of 268 +/- 58 pmol/cm/sup 2//h (p < 0.05; n = 6). Phosphoramidon also increased SP-induced secretion to 334 +/- 69 pmol/cm/sup 2//h (p < 0.005; n = 4), and also potentiated the secretory responses to neurokinins A and B, physalaemin, eledoisin, and kassinin, but did not potentiate the secretory responses to either bradykinin or vasoactive intestinal peptide. Other proteinase inhibitors did not potentiate SP-induced secretion. These results suggest that enkephalinase in the airway degrades tachykinins, and may therefore play a role in regulating tachykinin-induced effects.« less

Application of ion scattering spectroscopy to measurement of surface potential of MgO thin film under ion irradiation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Nagatomi, T.; Kuwayama, T.; Takai, Y.

2008-02-25

An experimental approach was proposed for the measurement of the surface potential (SP) induced on an insulator surface during ion irradiation by ion scattering spectroscopy (ISS). The resultant ISS spectra obtained for a MgO thin film of 600 nm thickness on a Si substrate under 950 eV He{sup +} irradiation revealed that the surface is positively charged by approximately 230 V. In addition, the onset energy of a secondary ion peak indicated a SP of approximately 205 V. The present results confirmed that ISS is an effective technique for measuring the SP during ion irradiation.

Influence of local riparian cover and watershed runoff potential on invertebrate communities in agricultural streams in the Minnesota River Basin

USGS Publications Warehouse

ZumBerge, Jeremy Ryan; Perry, James A.; Lee, Kathy E.

2003-01-01

While it is difficult to determine the relative influence of watershed runoff potential and local riparian cover, invertebrate communities may be more strongly influenced by local wooded riparian cover than by watershed runoff potential. Invertebrate community measures indicate greater degradation at the open riparian cover, high runoff potential sites and less degradation at the wooded riparian cover, low runoff potential sites. In addition, differences between streams with wooded riparian cover and sites with open riparian cover were greater in watersheds with high runoff potential. The variance explained by riparian cover and runoff potential is relatively independent of other land-use effects. Wooded riparian cover influences invertebrate community composition by its relation to the other physical environmental variables. This study indicates that wooded riparian cover may be effective in maintaining stream biotic integrity in watersheds dominated by agricultural land use.

Safety pharmacology — Current and emerging concepts

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hamdam, Junnat; Sethu, Swaminathan; Smith, Trevor

2013-12-01

Safety pharmacology (SP) is an essential part of the drug development process that aims to identify and predict adverse effects prior to clinical trials. SP studies are described in the International Conference on Harmonisation (ICH) S7A and S7B guidelines. The core battery and supplemental SP studies evaluate effects of a new chemical entity (NCE) at both anticipated therapeutic and supra-therapeutic exposures on major organ systems, including cardiovascular, central nervous, respiratory, renal and gastrointestinal. This review outlines the current practices and emerging concepts in SP studies including frontloading, parallel assessment of core battery studies, use of non-standard species, biomarkers, and combiningmore » toxicology and SP assessments. Integration of the newer approaches to routine SP studies may significantly enhance the scope of SP by refining and providing mechanistic insight to potential adverse effects associated with test compounds. - Highlights: • SP — mandatory non-clinical risk assessments performed during drug development. • SP organ system studies ensure the safety of clinical participants in FiH trials. • Frontloading in SP facilitates lead candidate drug selection. • Emerging trends: integrating SP-Toxicological endpoints; combined core battery tests.« less

Spatial and seasonal variation in the ecological significance of nutrient recycling by larval salamanders in Appalachian headwater streams

Treesearch

S. Conor Keitzer; Reuben R. Goforth

2013-01-01

Salamanders are abundant consumers in many temperate streams and may be important recyclers of biologically essential nutrients, but their ecological role is poorly understood. The ecological significance of nutrient recycling by salamanders may vary spatially and seasonally because of their potentially patchy distribution in streams and the dynamic nature of stream...

Multi-effect of the water-soluble Moringa oleifera lectin against Serratia marcescens and Bacillus sp.: antibacterial, antibiofilm and anti-adhesive properties.

PubMed

Moura, M C; Trentin, D S; Napoleão, T H; Primon-Barros, M; Xavier, A S; Carneiro, N P; Paiva, P M G; Macedo, A J; Coelho, L C B B

2017-10-01

To evaluate the antibiofilm potential of water-soluble Moringa oleifera seed lectin (WSMoL) on Serratia marcescens and Bacillus sp. WSMoL inhibited biofilm formation by S. marcescens at concentrations lower than 2·6 μg ml -1 and impaired bacterial growth at higher concentrations, avoiding biofilm formation. For Bacillus sp., the lectin inhibited bacterial growth at all concentrations. The antibiofilm action of WSMoL is associated with damage to bacterial cells. WSMoL did not disrupt preformed S. marcescens biofilms but was able to damage cells inside them. On the other hand, the lectin reduced the number of cells in Bacillus sp. biofilm treated with it. WSMoL was able to control biofilm formation when immobilized on glass surface (116 μg cm -2 ), damaging S. marcescens cells and avoiding adherence of Bacillus sp. cells on glass. The Bacillus sp. isolate is member of Bacillus subtilis species complex and closely related to species of the conspecific 'amyloliquefaciens' group. WSMoL prevented biofilm development by S. marcescens and Bacillus sp. and the antibiofilm effect is also observed when the lectin is immobilized on glass. Taking together, our results provide support to the potential use of WSMoL for controlling biofilm formation by bacteria. © 2017 The Society for Applied Microbiology.

Sponge-Associated Bacteria Produce Non-cytotoxic Melanin Which Protects Animal Cells from Photo-Toxicity.

PubMed

Vijayan, Vijitha; Jasmin, Chekidhenkuzhiyil; Anas, Abdulaziz; Parakkaparambil Kuttan, Sreelakshmi; Vinothkumar, Saradavey; Perunninakulath Subrayan, Parameswaran; Nair, Shanta

2017-09-01

Melanin is a photo-protective polymer found in many organisms. Our research shows that the bacteria associated with darkly pigmented sponges (Haliclona pigmentifera, Sigmadocia pumila, Fasciospongia cavernosa, Spongia officinalis, and Callyspongia diffusa) secrete non-cytotoxic melanin, with antioxidant activity that protects animal cells from photo-toxicity. Out of 156 bacterial strains screened, 22 produced melanin and these melanin-producing bacteria (MPB) were identified as Vibrio spp., Providencia sp., Bacillus sp., Shewanella sp., Staphylococcus sp., Planococcus sp., Salinococcus sp., and Glutamicibacter sp. Maximum melanin production was exhibited by Vibrio alginolyticus Marine Microbial Reference Facility (MMRF) 534 (50 mg ml -1 ), followed by two isolates of Vibrio harveyi MMRF 535 (40 mg ml -1 ) and MMRF 546 (30 mg ml -1 ). Using pathway inhibition assay and FT-IR spectral analysis, we identified the melanin secreted into the culture medium of MPB as 1,8-dihydroxynaphthalene-melanin. The bacterial melanin was non-cytotoxic to mouse fibroblast L929 cells and brine shrimps up to a concentration of 200 and 500 ppm, respectively. Bacterial melanin showed antioxidant activity at very low concentration (IC 50 -9.0 ppm) and at 50 ppm, melanin protected L929 cells from UV-induced intracellular reactive oxygen stress. Our study proposes sponge-associated bacteria as a potential source of non-cytotoxic melanin with antioxidant potentials.

In Vitro Antimicrobial Potential of the Lichen Parmotrema sp. Extracts against Various Pathogens.

PubMed

Chauhan, Ritika; Abraham, Jayanthi

2013-07-01

The ongoing increasing antibiotic resistance is one of the biggest challenges faced by global public health. The perennial need for new antimicrobials against a background of increasing antibiotic resistance in pathogenic and opportunistic microorganisms obliges the scientific community to constantly develop new drugs and antimicrobial agents. Lichens are known prolific sources of natural antimicrobial drugs and biologically active natural products. This study was aimed to explore in vitro antimicrobial activity of lichen Parmotrema sp. The methanol and aqueous extracts of lichen Parmotrema sp. was extracted using Soxhlet extractor. Antibiotic assessment of methanol and aqueous extracts was done against eight bacterial (Escherichia coli, Staphylococcus aureus, Proteus mirabilis, Salmonella sp., Shigella sp., Enterococci faecalis, Pseudomonas aeruginosa, Klebsiella pneumoniae,) clinical pathogens and five plant pathogenic fungal strains (Aspergillus terreus strain JAS1, Scedosporium sp. JAS1, Ganoderma sp. JAS4, Candida tropicalis and Fusarium sp.) by Kirby-Bauer method. The methanol lichen Parmotrema sp. extract inhibited all the test organisms. The highest antibacterial activity was found against Pseudomonas aeruginosa and Staphylococcus aureus. The weakest activity was manifested in Salmonella sp. and Scedosporium sp. JAS1. Strong antifungal effect was found against Ganoderma sp. JAS4 and Fusarium sp. The aqueous lichen Parmotrema sp. extract revealed neither antibacterial nor antifungal activity. The present study shows that tested lichen Parmotrema sp. extracts demonstrated a strong antimicrobial effect. That suggests the active components from methanol extracts of the investigated lichen Parmotrema sp. can be used as natural antimicrobial agent against pathogens.

Sex differences in the acute in vivo effects of different human SP-A variants on the mouse alveolar macrophage proteome

PubMed Central

Phelps, David S.; Umstead, Todd M.; Floros, Joanna

2014-01-01

Surfactant protein A (SP-A) is involved in lung innate immunity. Humans have two SP-A genes, SFTPA1 and SFTPA2, each with several variants. We examined the in vivo effects of treatment with specific SP-A variants on the alveolar macrophage (AM) proteome from SP-A knockout (KO) mice. KO mice received either SP-A1, SP-A2, or both. AM were collected and their proteomes examined with 2D-DIGE. We identified 90 proteins and categorized them as related to actin/cytoskeleton, oxidative stress, protease balance/chaperones, regulation of inflammation, and regulatory/developmental processes. SP-A1 and SP-A2 had different effects on the AM proteome and these effects differed between sexes. In males more changes occurred in the oxidative stress, protease/chaperones, and inflammation groups with SP-A2 treatment than with SP-A1. In females most SP-A1-induced changes were in the actin/cytoskeletal and oxidative stress groups. We conclude that after acute SP-A1 and SP-A2 treatment, sex-specific differences were observed in the AM proteomes from KO mice, and that these sex differences differ in response to SP-A1 and SP-A2. Females are more responsive to SP-A1, whereas the gene-specific differences in males were minimal. These observations not only demonstrate the therapeutic potential of exogenous SP-A, but also illustrate sex- and gene-specific differences in the response to it. PMID:24954098

Dux4 induces cell cycle arrest at G1 phase through upregulation of p21 expression

DOE Office of Scientific and Technical Information (OSTI.GOV)

Xu, Hongliang; Wang, Zhaoxia; Jin, Suqin

2014-03-28

Highlights: • Dux4 induced TE671 cell proliferation defect and G1 phase arrest. • Dux4 upregulated p21 expression without activating p53. • Silencing p21 rescued Dux4 mediated proliferation defect and cell cycle arrest. • Sp1 binding site was required for Dux4-induced p21 promoter activation. - Abstract: It has been implicated that Dux4 plays crucial roles in development of facioscapulohumeral dystrophy. But the underlying myopathic mechanisms and related down-stream events of this retrogene were far from clear. Here, we reported that overexpression of Dux4 in a cell model TE671 reduced cell proliferation rate, and increased G1 phase accumulation. We also determined themore » impact of Dux4 on p53/p21 signal pathway, which controls the checkpoint in cell cycle progression. Overexpression of Dux4 increased p21 mRNA and protein level, while expression of p53, phospho-p53 remained unchanged. Silencing p21 rescued Dux4 mediated proliferation defect and cell cycle arrest. Furthermore, we demonstrated that enhanced Dux4 expression increased p21 promoter activity and elevated expression of Sp1 transcription factor. Mutation of Sp1 binding site decreased dux4 induced p21 promoter activation. Chromatin immunoprecipitation (ChIP) assays confirmed the Dux4-induced binding of Sp1 to p21 promoter in vivo. These results suggest that Dux4 might induce proliferation inhibition and G1 phase arrest through upregulation of p21.« less

The legacy of lead (Pb) in fluvial bed sediments of an urban drainage basin, Oahu, Hawaii.

PubMed

Hotton, Veronica K; Sutherland, Ross A

2016-03-01

The study of fluvial bed sediments is essential for deciphering the impact of anthropogenic activities on water quality and drainage basin integrity. In this study, a systematic sampling design was employed to characterize the spatial variation of lead (Pb) concentrations in bed sediment of urban streams in the Palolo drainage basin, southeastern Oahu, Hawaii. Potentially bioavailable Pb was assessed with a dilute 0.5 N HCl extraction of the <63 μm grain-size fraction from the upper bed sediment layer of 169 samples from Palolo, Pukele, and Waiomao streams. Contamination of bed sediments was associated with the direct transport of legacy Pb from the leaded gasoline era to stream channels via a dense network of storm drains linked to road surfaces throughout the basin. The Palolo Stream had the highest median Pb concentration (134 mg/kg), and the greatest road and storm drain densities, the greatest population, and the most vehicle numbers. Lower median Pb concentrations were associated with the less impacted Pukele Stream (24 mg/kg), and Waiomao Stream (7 mg/kg). The median Pb enrichment ratio values followed the sequence of Palolo (68) > Pukele (19) > Waiomao (8). Comparisons to sediment quality guidelines and potential toxicity estimates using a logistic regression model (LRM) indicated a significant potential risk of Palolo Stream bed sediments to bottom-dwelling organisms.

Draft genome sequence of Pseudomonas sp. strain M47T1, carried by Bursaphelenchus xylophilus isolated from Pinus pinaster.

PubMed

Proença, Diogo Neves; Espírito Santo, Christophe; Grass, Gregor; Morais, Paula V

2012-09-01

The draft genome sequence of Pseudomonas sp. strain M47T1, carried by the Bursaphelenchus xylophilus pinewood nematode, the causative agent of pine wilt disease, is presented. In Pseudomonas sp. strain M47T1, genes that make this a plant growth-promoting bacterium, as well as genes potentially involved in nematotoxicity, were identified.

Site productivity - current estimates, change, and possible enhancements for the Northern Research Station

Treesearch

Scott A. Pugh

2012-01-01

Site productivity (SP) is the inherent capacity to grow crops of industrial wood. SP identifies the potential growth in cubic feet/acre/year and is based on the culmination of mean annual increment of fully stocked natural stands. Changes in SP were summarized for timberland and the associated effects on net growth and removal estimates were investigated using data...

STREAM CORRIDOR RESTORATION AND ITS POTENTIAL TO IMPROVE WATER QUALITY

EPA Science Inventory

Watershed stream corridors are being degraded by anthropogenic impacts of increased flow from runoff, sediment loading from erosion and contaminants such as nitrate from non-point sources. One solution is to restore stream corridors with bank stabilization and energy dissipation ...

Linearized potential solution for an airfoil in nonuniform parallel streams

NASA Technical Reports Server (NTRS)

Prabhu, R. K.; Tiwari, S. N.

1983-01-01

A small perturbation potential flow theory is applied to the problem of determining the chordwise pressure distribution, lift and pitching moment of a thin airfoil in the middle of five parallel streams. This theory is then extended to the case of an undisturbed stream having a given smooth velocity profile. Two typical examples are considered and the results obtained are compared with available solutions of Euler's equations. The agreement between these two results is not quite satisfactory. Possible reasons for the differences are indicated.

Safety pharmacology--current and emerging concepts.

PubMed

Hamdam, Junnat; Sethu, Swaminathan; Smith, Trevor; Alfirevic, Ana; Alhaidari, Mohammad; Atkinson, Jeffrey; Ayala, Mimieveshiofuo; Box, Helen; Cross, Michael; Delaunois, Annie; Dermody, Ailsa; Govindappa, Karthik; Guillon, Jean-Michel; Jenkins, Rosalind; Kenna, Gerry; Lemmer, Björn; Meecham, Ken; Olayanju, Adedamola; Pestel, Sabine; Rothfuss, Andreas; Sidaway, James; Sison-Young, Rowena; Smith, Emma; Stebbings, Richard; Tingle, Yulia; Valentin, Jean-Pierre; Williams, Awel; Williams, Dominic; Park, Kevin; Goldring, Christopher

2013-12-01

Safety pharmacology (SP) is an essential part of the drug development process that aims to identify and predict adverse effects prior to clinical trials. SP studies are described in the International Conference on Harmonisation (ICH) S7A and S7B guidelines. The core battery and supplemental SP studies evaluate effects of a new chemical entity (NCE) at both anticipated therapeutic and supra-therapeutic exposures on major organ systems, including cardiovascular, central nervous, respiratory, renal and gastrointestinal. This review outlines the current practices and emerging concepts in SP studies including frontloading, parallel assessment of core battery studies, use of non-standard species, biomarkers, and combining toxicology and SP assessments. Integration of the newer approaches to routine SP studies may significantly enhance the scope of SP by refining and providing mechanistic insight to potential adverse effects associated with test compounds. Copyright © 2013 Elsevier Inc. All rights reserved.

Cytogenetic analysis of five Hypostomus species (Siluriformes, Loricariidae)

PubMed Central

Martinez, Emanuel Ricardo Monteiro; Zawadzki, Claudio Henrique; Foresti, Fausto; Oliveira, Claudio

2011-01-01

In this work, we analyzed the karyotypes of five Hypostomus species. Hypostomus cf. heraldoi, from the Mogi-Guaçu River, had 2n = 72 chromosomes, with a nucleolar organizer region (NOR) in one chromosomal pair. Hypostomus regani, from the Mogi-Guaçu River had 2n = 72 chromosomes with NORs in two chromosomal pairs. Hypostomus sp., from the Mogi-Guaçu River basin, had 2n = 68 chromosomes, with NORs in two chromosomal pairs. Hypostomus aff. agna, from Cavalo Stream, had 2n = 74 chromosomes with NORs in two chromosomal pairs. Hypostomus cf. topavae, from Carrapato Stream, had 2n = 80 chromosomes, with NORs in two chromosomal pairs. Hypostomus species showed marked diversity in the karyotypic formula, which suggested the occurrence of several Robertsonian rearrangements and pericentric inversions during the evolutionary history of this genus. This hypothesis was supported by the occurrence of a large number of uniarmed chromosomes and multiple NORs in a terminal position in most species and may be a derived condition in the Loricariidae. PMID:22215958

Cellular and synaptic effect of substance P on neonatal phrenic motoneurons.

PubMed

Ptak, K; Konrad, M; Di Pasquale, E; Tell, F; Hilaire, G; Monteau, R

2000-01-01

Experiments were carried out on the in vitro brainstem-spinal cord preparation of the newborn rat to analyse the effects of substance P (SP) on phrenic motoneuron (PMN) activity. In current-clamp mode, SP significantly depolarized PMNs, increased their input resistance, decreased the rheobase current and shifted the firing frequency-intensity relationships leftwards, but did not affect spike frequency adaptation or single spike configuration. The neurokinin receptor agonist NK1 had SP-mimetic effects, whereas the NK3 and NK2 receptor agonists were less effective and ineffective, respectively. In a tetrodotoxin-containing aCSF, only SP or the NK1 receptor agonist were still active. No depolarization was observed when the NK1 receptor agonist was applied in the presence of muscarine. In voltage-clamp mode, SP or the NK1 receptor agonist produced an inward current (ISP) which was not significantly reduced by extracellular application of tetraethylammonium, Co2+, 4-aminopyridine or Cs+. In aCSF containing tetrodotoxin, Co2+ and Cs+, ISP was blocked by muscarine. No PMN displayed any M-type potassium current but only a current showing no voltage sensitivity over the range -100 to 0 mV, reversing near the expected EK +, hence consistent with a leak current. SP application to the spinal cord only (using a partitioned chamber) significantly increased the phrenic activity. Pretreatment with the NMDA receptor antagonist DL-2-amino-5-phosphonovaleric acid (AP5) decreased the C4 discharge duration and blocked the effect of SP, thus exhibiting an NMDA potentiation by SP. In conclusion, SP modulates postsynaptically the response of phrenic motoneurons to the inspiratory drive through the reduction of a leak conductance and the potentiation of the NMDA component of the synaptic input.

Fresh Water Cyanobacteria Geitlerinema sp. CCC728 and Arthrospira sp. CCC729 as an Anticancer Drug Resource.

PubMed

Srivastava, Akanksha; Tiwari, Ratnakar; Srivastava, Vikas; Singh, Tej Bali; Asthana, Ravi Kumar

2015-01-01

An increasing number of cancer patients worldwide, especially in third world countries, have raised concern to explore natural drug resources, such as the less explored fresh water filamentous cyanobacteria. Six strains of cyanobacteria (Phormidium sp. CCC727, Geitlerinema sp. CCC728, Arthrospira sp. CCC729, Phormidium sp. CCC731, Phormidium sp. CCC730, and Leptolyngbya sp. CCC732) were isolated (paddy fields and ponds in the Banaras Hindu University, campus) and five strains screened for anticancer potential using human colon adenocarcinoma (HT29) and human kidney adenocarcinoma (A498) cancer cell lines. Geitlerinema sp. CCC728 and Arthrospira sp. CCC729 were the most potent as determined by examination of morphological features and by inhibition of growth by graded concentrations of crude extracts and thin-layer chromatography (TLC) eluates. Cell cycle analysis and multiplex assays using cancer biomarkers also confirmed Geitlerinema sp. CCC728 and Arthrospira sp. CCC729 as cancer drug resources. Apoptotic studies in the cells of A498 (cancer) and MCF-10A (normal human epithelial) exposed to crude extracts and TLC fractions revealed no significant impact on MCF-10A cells emphasizing its importance in the development of anticancer drug. Identification of biomolecules from these extracts are in progress.

Fresh Water Cyanobacteria Geitlerinema sp. CCC728 and Arthrospira sp. CCC729 as an Anticancer Drug Resource

PubMed Central

Tiwari, Ratnakar; Srivastava, Vikas

2015-01-01

An increasing number of cancer patients worldwide, especially in third world countries, have raised concern to explore natural drug resources, such as the less explored fresh water filamentous cyanobacteria. Six strains of cyanobacteria (Phormidium sp. CCC727, Geitlerinema sp. CCC728, Arthrospira sp. CCC729, Phormidium sp. CCC731, Phormidium sp. CCC730, and Leptolyngbya sp. CCC732) were isolated (paddy fields and ponds in the Banaras Hindu University, campus) and five strains screened for anticancer potential using human colon adenocarcinoma (HT29) and human kidney adenocarcinoma (A498) cancer cell lines. Geitlerinema sp. CCC728 and Arthrospira sp. CCC729 were the most potent as determined by examination of morphological features and by inhibition of growth by graded concentrations of crude extracts and thin-layer chromatography (TLC) eluates. Cell cycle analysis and multiplex assays using cancer biomarkers also confirmed Geitlerinema sp. CCC728 and Arthrospira sp. CCC729 as cancer drug resources. Apoptotic studies in the cells of A498 (cancer) and MCF-10A (normal human epithelial) exposed to crude extracts and TLC fractions revealed no significant impact on MCF-10A cells emphasizing its importance in the development of anticancer drug. Identification of biomolecules from these extracts are in progress. PMID:26325186

Role of Geitlerinema sp. DE2011 and Scenedesmus sp. DE2009 as Bioindicators and Immobilizers of Chromium in a Contaminated Natural Environment.

PubMed

Millach, Laia; Solé, Antoni; Esteve, Isabel

2015-01-01

The aim of this work was to study the potential of the two phototrophic microorganisms, both isolated from Ebro Delta microbial mats, to be used as bioindicators and immobilizers of chromium. The results obtained indicated that (i) the Minimum Metal Concentration (MMC) significantly affecting Chlorophyll a intensity in Geitlerinema sp. DE2011 and Scenedesmus sp. DE2009 was 0.25 µM and 0.75 µM, respectively, these values being lower than those established by current legislation, and (ii) Scenedesmus sp. DE2009 was able to immobilize chromium externally in extracellular polymeric substances (EPS) and intracellularly in polyphosphate (PP) inclusions. Additionally, this microorganism maintained high viability, including at 500 µM. Based on these results, we postulate that Geitlerinema sp. DE2011 and Scenedesmus sp. DE2009 are good chromium-indicators of cytotoxicity and, further, that Scenedesmus sp. DE2009 plays an important role in immobilizing this metal in a contaminated natural environment.

Role of Geitlerinema sp. DE2011 and Scenedesmus sp. DE2009 as Bioindicators and Immobilizers of Chromium in a Contaminated Natural Environment

PubMed Central

2015-01-01

The aim of this work was to study the potential of the two phototrophic microorganisms, both isolated from Ebro Delta microbial mats, to be used as bioindicators and immobilizers of chromium. The results obtained indicated that (i) the Minimum Metal Concentration (MMC) significantly affecting Chlorophyll a intensity in Geitlerinema sp. DE2011 and Scenedesmus sp. DE2009 was 0.25 µM and 0.75 µM, respectively, these values being lower than those established by current legislation, and (ii) Scenedesmus sp. DE2009 was able to immobilize chromium externally in extracellular polymeric substances (EPS) and intracellularly in polyphosphate (PP) inclusions. Additionally, this microorganism maintained high viability, including at 500 µM. Based on these results, we postulate that Geitlerinema sp. DE2011 and Scenedesmus sp. DE2009 are good chromium-indicators of cytotoxicity and, further, that Scenedesmus sp. DE2009 plays an important role in immobilizing this metal in a contaminated natural environment. PMID:26167488

A Verhulst model for microalgae Botryococcus sp. growth and nutrient removal in wastewater

NASA Astrophysics Data System (ADS)

Jamaian, Siti Suhana; Bakeri, Noorhadila Mohd; Sunar, Norshuhaila Mohamed; Gani, Paran

2017-08-01

Microalgae Botryococcus sp. is a colonial green alga found in lakes and reservoirs in Malaysia. Previous studies reported that the potential of Botryococcus sp. photosynthesis as a source of fuel. The Botryococcus sp. contains hydrocarbon up to 75% of dry weight, which can be converted into petrol, diesel or turbine fuel or other liquid or gaseous hydrocarbons. Recently, an experimental study was conducted on phycoremediation technology for wastewater using Botryococcus sp. The phycoremediation technology is useful to remove the excess of nutrients such as nitrogen, phosphorus and also have the ability to remove various pollutants from wastewater. This research implements the Verhulst model to estimate the nutrient removal by microalgae Botryococcus sp. from the wastewater. This model has been validated with the experiments of microalgae Botryococcus sp. grown in domestic and palm oil wastewater. The results suggested that microalgae Botryococcus sp. could be cultured in domestic and palm oil wastewater while nutrients are reduced from these wastewaters.

New insights into the hydrogeology of a basaltic shield volcano from a comparison between self-potential and electromagnetic data: Piton de la Fournaise, Indian ocean

NASA Astrophysics Data System (ADS)

Boubekraoui, Souad; Courteaud, Michel; Aubert, Maurice; Albouy, Yves; Coudray, Jean

1998-12-01

In order to investigate aquifers, several geophysical surveys have been carried out in the Baril area of the southern flank of Piton de la Fournaise volcano on Reunion in the Indian Ocean using audiomagnetotelluric (AMT), very-low-frequency (VLF) and self-potential (SP) methods. We present the results with emphasis on a comparison between SP data and the findings of geoelectric surveys. AMT soundings have indicated, from the surface downward, three layers: (i) resistive volcanic rocks, (ii) an intermediate resistivity layer, and (iii) a conductive basement attributed to a seawater-bearing aquifer. VLF measurements allow the mapping of the first layer apparent resistivity, and therefore its bottom, when the true resistivity is supposed to be isotropic and homogenous. When this assumption does not hold, only the SP method permits the mapping of this bottom. Because of the good agreement between the SP and electromagnetic results, we propose the SP method as the first tool that should be used in studying shallow hydrogeological structures in volcanic areas.

Estimation of potential maximum biomass of trout in Wyoming streams to assist management decisions

USGS Publications Warehouse

Hubert, W.A.; Marwitz, T.D.; Gerow, K.G.; Binns, N.A.; Wiley, R.W.

1996-01-01

Fishery managers can benefit from knowledge of the potential maximum biomass (PMB) of trout in streams when making decisions on the allocation of resources to improve fisheries. Resources are most likely to he expended on streams with high PMB and with large differences between PMB and currently measured biomass. We developed and tested a model that uses four easily measured habitat variables to estimate PMB (upper 90th percentile of predicted mean bid mass) of trout (Oncorhynchus spp., Salmo trutta, and Salvelinus fontinalis) in Wyoming streams. The habitat variables were proportion of cover, elevation, wetted width, and channel gradient. The PMB model was constructed from data on 166 stream reaches throughout Wyoming and validated on an independent data set of 50 stream reaches. Prediction of PMB in combination with estimation of current biomass and information on habitat quality can provide managers with insight into the extent to which management actions may enhance trout biomass.

Organic waste compounds as contaminants in Milwaukee-area streams

USGS Publications Warehouse

Baldwin, Austin K.; Corsi, Steven R.; Magruder, Christopher; Magruder, Matthew; Bruce, Jennifer L.

2015-09-22

Organic waste compounds (OWCs) are ingredients and by-products of common agricultural, industrial, and household substances that can contaminate our streams through sources like urban runoff, sewage overflows, and leaking septic systems. To better understand how OWCs are affecting Milwaukee-area streams, the U.S. Geological Survey, in cooperation with the Milwaukee Metropolitan Sewerage District, conducted a three-year study to investigate the presence and potential toxicity of 69 OWCs in base flow, stormflow, pore water, and sediment at 14 stream sites and 3 Milwaukee harbor locations. This fact sheet summarizes the major findings of this study, including detection frequencies and concentrations, potential toxicity, the prevalence of polycyclic aromatic hydrocarbons (PAHs), and the influence of urbanization.

Chlorophyll a-specific Δ14C, δ13C and δ15N values in stream periphyton: implications for aquatic food web studies

NASA Astrophysics Data System (ADS)

Ishikawa, N. F.; Yamane, M.; Suga, H.; Ogawa, N. O.; Yokoyama, Y.; Ohkouchi, N.

2015-11-01

Periphytic algae attached to a streambed substrate (periphyton) are an important primary producer in stream ecosystems. We determined the isotopic composition of chlorophyll a in periphyton collected from a stream flowing on limestone bedrock in the Seri River, central Japan. Stable isotope ratios of carbon (δ13C) and nitrogen (δ15N) and natural radiocarbon abundances (Δ14C) were measured in chlorophyll a (δ13Cchl, δ15Nchl and Δ14Cchl) and bulk (δ13Cbulk, δ15Nbulk and Δ14Cbulk) for periphyton, a pure aquatic primary producer (Cladophora sp.) and a terrestrial primary producer (Quercus glauca). Periphyton δ13Cbulk and δ13Cchl values did not necessarily correspond to δ13Cbulk for an algal-grazing specialist (Epeorus latifolium). Periphyton Δ14Cchl values (-258 ‰ in April and -190 ‰ in October) were slightly lower than Δ14Cbulk values (-228 ‰ in April and -179 ‰ in October) but were close to the Δ14C value for dissolved inorganic carbon (DIC; -217 ± 31 ‰), which is a mixture of weathered carbonates (Δ14C = -1000 ‰), CO2 derived from aquatic and terrestrial organic matters (variable Δ14C) and dissolved atmospheric CO2 (Δ14C approximately +30 ‰ in 2013). Δ14Cchl values were also close to Δ14Cbulk for E. latifolium (-215 ‰ in April and -199 ‰ in October) and Cladophora sp. (-210 ‰), whereas the Δ14Cbulk value for Q. glauca (+27 ‰) was closer to Δ14C for atmospheric CO2. Although the bulk isotopic composition of periphyton is recognised as a surrogate for the photosynthetic algal community, natural periphyton is a mixture of aquatic and terrestrial organic materials. Our results indicate that the bulk periphyton matrix at the study site consists of 89 to 95 % algal carbon (derived from 14C-depleted DIC) and 5 to 11 % terrestrial organic carbon (derived from 14C-enriched atmospheric CO2).

A spatial model for a stream networks of Citarik River with the environmental variables: potential of hydrogen (PH) and temperature

NASA Astrophysics Data System (ADS)

Bachrudin, A.; Mohamed, N. B.; Supian, S.; Sukono; Hidayat, Y.

2018-03-01

Application of existing geostatistical theory of stream networks provides a number of interesting and challenging problems. Most of statistical tools in the traditional geostatistics have been based on a Euclidean distance such as autocovariance functions, but for stream data is not permissible since it deals with a stream distance. To overcome this autocovariance developed a model based on the distance the flow with using convolution kernel approach (moving average construction). Spatial model for a stream networks is widely used to monitor environmental on a river networks. In a case study of a river in province of West Java, the objective of this paper is to analyze a capability of a predictive on two environmental variables, potential of hydrogen (PH) and temperature using ordinary kriging. Several the empirical results show: (1) The best fit of autocovariance functions for temperature and potential hydrogen (ph) of Citarik River is linear which also yields the smallest root mean squared prediction error (RMSPE), (2) the spatial correlation values between the locations on upstream and on downstream of Citarik river exhibit decreasingly

The Venus Balloon Project telemetry processing

NASA Technical Reports Server (NTRS)

Urech, J. M.; Chamarro, A.; Morales, J. L.; Urech, M. A.

1986-01-01

The peculiarities of the Venus Balloon telemetry system required the development of a new methodology for the telemetry processing, since the capabilities of the Deep Space Network (DSN) telemetry system do not include burst processing of short frames with two different bit rates and first bit acquisition. A software package was produced for the non-real time detection, demodulation, and decoding of the telemetry streams obtained from an open loop recording utilizing the DSN spectrum processing subsystem-radio science (DSP-RS). A general description of the resulting software package (DMO-5539-SP) and its adaptability to the real mission's variations is contained.

Evaluation of road approaches to four different types of stream crossings in the Virginia Piedmont

Treesearch

Matthew B. Carroll; W. Michael Aust; C. Andrew Dolloff; Robert M. Shaffer

2013-01-01

Erosion potential was estimated for road approaches during 4 phases of a timber harvesting scheduled for 23 stream crossings in the Virginia Piedmont. The objectives of this study were to: (1) examine four different types of stream crossing structures (steel bridges, pole bridges, standard culverts, and reenforced fords) in order to determine if the type of stream...

The effect of increasing gravel cover on forest roads for reduced sediment delivery to stream crossings

Treesearch

Kristopher Brown; Kevin J. McGuire; W. Michael Aust; W. Cully Hession; C. Andrew Dolloff

2014-01-01

Direct sediment inputs from forest roads at stream crossings are a major concern for water quality and aquatic habitat. Legacy road–stream crossing approaches, or the section of road leading to the stream, may have poor water and grade control upon reopening, thus increasing the potential for negative impacts to water quality. Rainfall simulation experiments were...

Assessment of the risk of invasion of national forest streams in the Pacific Northwest by farmed Atlantic salmon.

Treesearch

Peter A. Bisson

2006-01-01

This report describes the evidence for invasion of Pacific Northwest streams by Atlantic salmon (Salmo salar) that have escaped from marine salmon farms, and assesses the potential impact of farmed salmon invasion on native fishes inhabiting streams on National Forest System lands. The current risk to streams on National Forest lands in the Pacific Northwest from...

Integrated assessment of sources, chemical stressors and stream quality along a groundwater fed stream system

NASA Astrophysics Data System (ADS)

Løgstrup Bjerg, Poul; Sonne, Anne T.; Rønde, Vinni; McKnight, Ursula S.

2016-04-01

Streams are impacted by significant contamination at the catchment scale, as they are often locations of multiple chemical stressor inputs. The European Water Framework Directive requires EU member states to ensure good chemical and ecological status of surface water bodies by 2027. This requires monitoring of stream water quality, comparison with environmental quality standards (EQS) and assessment of ecological status. However, the achievement of good status of stream water also requires a strong focus on contaminant sources, pathways and links to stream water impacts, so source management and remedial measures can be implemented. Fate and impacts of different contaminant groups are governed by different processes and are dependent on the origin (geogenic, anthropogenic), source type (point or diffuse) and pathway of the contaminant. To address this issue, we identified contaminant sources and chemical stressors on a groundwater-fed stream to quantify the contaminant discharges, link the chemical impact and stream water quality and assess the main chemical risk drivers in the stream system potentially driving ecological impact. The study was conducted in the 8 m wide Grindsted stream (Denmark) along a 16 km stream stretch that is potentially impacted by two contaminated sites (Grindsted Factory site, Grindsted Landfill), fish farms, waste water discharges, and diffuse sources from agriculture and urban areas. Water samples from the stream and the hyporheic zone as well as bed sediment samples were collected during three campaigns in 2012 and 2014. Data for xenobiotic organic groundwater contaminants, pesticides, heavy metals, general water chemistry, physical conditions and stream flow were collected. The measured chemical concentrations were converted to toxic units (TU) based on the 48h acute toxicity tests with D. magna. The results show a substantial impact of the Grindsted Factory site at a specific stretch of the stream. The groundwater plume caused elevated concentrations of chlorinated ethenes, benzene and site specific pharmaceuticals in both the hyporheic zone and the stream water. Observed stream water vinyl chloride concentrations (up to 6 μg/L) are far above the Danish EQS (0.05 μg/L) for several km downstream of the discharge area. For heavy metals, comparison with EQS in stream water, the hyporheic zone and streambed showed concentrations around or above the threshold values for barium, copper, lead, nickel and zinc. The calculated TU was generally similar along the stream, but for arsenic and nickel higher values were observed where the groundwater plume discharges into the stream. Also, log TU sum values for organic contaminants were elevated in both the hyporheic zone and stream. Thus, the overall chemical stress in the main discharge area is much higher than upstream, while it gradually decreases downstream. In conclusion, this work clearly shows that groundwater contaminant plumes can impact stream water quality significantly in discharge areas, and extend far downstream. A surprisingly high impact of heavy metals with diffuse and/or biogenic origin on stream quality was identified. This work highlights the importance of a holistic assessment of stream water quality to identify and quantify the main contaminant sources and resulting chemical stream stressors leading to potential ecological impacts.

Subthreshold concentration of endothelin-1-enhanced, capsaicin-induced bronchoconstriction in anaesthetized guinea-pigs.

PubMed

Kanazawa, H; Fujiwara, H; Hirata, K; Yoshikawa, J

1998-12-01

An increasing number of studies have been performed to address a possible role for endothelin-1 (ET-1) as a significant mediator in asthma. However, the effects of subthreshold concentrations of ET-1, which cannot elicit bronchial smooth muscle contraction itself, in asthma has yet to be determined. This study determined these effects of ET-1 on capsaicin-induced bronchoconstriction in anaesthetized guinea-pigs. Aerosolized ET-1 administered at doses of 10(-9) M and higher induced a dose-dependent increase in pulmonary resistance, but ET-1 at 10(-10) M did not have any bronchoconstrictive effect. However, this subthreshold concentration of ET-1 potentiated capsaicin-induced bronchoconstriction. In addition, the potentiation of capsaicin-induced bronchoconstriction by this subthreshold concentration of ET-1 was completely abolished by BQ788 (ET(B) receptor antagonist), but not BQ123 (ET(A) receptor antagonists). Immunoreactive substance P (SP) levels in bronchoalveolar lavage fluid after capsaicin administration were significantly higher than those after solvent administration. However, ET-1 alone did not significantly stimulate immunoreactive SP release and ET-1 (10(-10) M) did not potentiate capsaicin-induced immunoreactive SP release. In contrast, ET-1 (10(-10) M) potentiated exogenous neurokinin A- and SP-induced bronchoconstriction. These findings suggest that a subthreshold concentration of endothelin-1 does not potentiate the tachykinin release induced by capsaicin but the airway smooth muscle contraction through endothelin-B receptors.

Scopoletin protects against methylglyoxal-induced hyperglycemia and insulin resistance mediated by suppression of advanced glycation endproducts (AGEs) generation and anti-glycation.

PubMed

Chang, Wen-Chang; Wu, Shinn-Chih; Xu, Kun-Di; Liao, Bo-Chieh; Wu, Jia-Feng; Cheng, An-Sheng

2015-02-09

Recently, several types of foods and drinks, including coffee, cream, and cake, have been found to result in high methylglyoxal (MG) levels in the plasma, thus causing both nutritional and health concerns. MG can be metabolized by phase-II enzymes in liver through the positive regulation of nuclear factor-erythroid 2-related factor 2 (Nrf2). In this study, we investigated the ability of scopoletin (SP) to protect against MG-induced hyperglycemia and insulin resistance. Recently, SP was shown to be a peroxisome proliferator-activated receptor-γ activator to elevate insulin sensitivity. We investigated the effects of oral administration of SP on the metabolic, biochemical, and molecular abnormalities characteristic of type 2 diabetes in MG-treated Wistar rats to understand the potential mechanism of scopoletin for diabetes protection. Our results suggested that SP activated Nrf2 by Ser40 phosphorylation, resulting in the metabolism of MG into d-lactic acid and the inhibition of AGEs generation, which reduced the accumulation of AGEs in the livers of MG-induced rats. In this manner, SP improved the results of the oral glucose tolerance test and dyslipidemia. Moreover, SP also increased the plasma translocation of glucose transporter-2 and promoted Akt phosphorylation caused by insulin treatment in MG-treated FL83B hepatocytes. In contrast, SP effectively suppressed protein tyrosine phosphatase 1B (PTP1B) expression, thereby alleviating insulin resistance. These findings suggest that SP acts as an anti-glycation and anti-diabetic agent, and thus has therapeutic potential for the prevention of diabetes.

Studying the hysteretic behaviour of unconsolidated sediments using an electroencephalography apparatus: a laboratory study.

NASA Astrophysics Data System (ADS)

Ruggeri, Paolo; Jougnot, Damien; Chavarriaga, Ricardo; Brandner, Catherine; del Rocio Millán Ruiz, José; Linde, Niklas

2015-04-01

In soil science, the hysteretic nature of the water retention curve plays an important role in describing a soil's propensity to retain water and conduct fluid flow. However, hysteresis effects remain difficult to study and to quantify. Geophysical methods provide suitable and non-invasive tools that could be used for this purpose. For example, the degree of water saturation in a soil can be determined by measuring its electrical resistivity, while a water flux through a soil generates a measureable electrical potential difference (streaming potential). The objective of this work is to study the hysteretic behaviour of unconsolidated sediments during repeated drainage and imbibition cycles under well-constrained laboratory conditions. Monitoring was performed using a 32-electrode electroencephalography (EEG) apparatus (Biosemi) coupled with a current injection system. We used a 150 cm high sand-filled column in which we monitored self-potential (SP) signals using 15 electrodes in direct contact with the medium (so-called "naked" electrodes), and 15 electrodes that were inserted in small porous pots that were filled with water of the same conductivity and chloride concentration as the water saturating the sand (so-called "chamber" electrodes). For both electrode types, the electrodes were placed between 5 and 145 cm height with an electrode spacing of 10 cm. Pressure (10 tensiometers) and mass, together with the temperature and the relative humidity in the room, were constantly monitored for the entire duration of the experiments. We performed ten cycles of drainage and imbibition by changing the water level of an external reservoir connected to the column. Each drainage and imbibition cycle took approximately 25 and 17 hours, respectively, for a total duration of the experiment of 24 days. After each imbibition and drainage cycle, we performed complex conductivity measurements by injecting a known electric current at two electrodes using a sine wave with varying frequency (top and bottom of the column) and by measuring the electric voltages at the 30 SP measurement electrodes. These measurements allowed us to determine the evolution of the electrical resistivity of the studied media at different states of hysteresis. Our first results indicate that hysteretic effects and entrapped air are clearly evidenced in the electrical resistivity measurements. Noteworthy our SP measurements (for both chamber and naked electrodes) are affected by an important electrode polarization contribution. This contribution is repeatable and different for the two types of electrodes (amplitude and shape) with the smallest effects seen for the naked electrodes. These data will help to better understand hysteretic effects in soil science and, highlights the importance of differentiating between petrophysical and instrumental responses in in situ soil studies when using geophysical methods.

The NH2-terminus of substance P modulates NMDA-induced activity in the mouse spinal cord.

PubMed

Hornfeldt, C S; Sun, X; Larson, A A

1994-05-01

Excitatory amino acids (EAAs) and substance P are believed to transmit nociceptive information in the spinal cord. As substance P NH2-terminal fragments can modulate non-NMDA EAA-mediated activity, we examined the effects of substance P fragments to ascertain whether the COOH- or NH2-terminus of substance P modulates the actions of NMDA in the spinal cord. NMDA activity was measured by the intensity of behaviors produced by NMDA (0.2 nmol) administered intrathecally in the mouse. The NMDA response was attenuated after pretreatment with either substance P (22.5 pmol, 30 min) or the NH2-terminal fragment of substance P, SP-(1-7). Pretreatment with the COOH-terminal fragment SP-(5-11) (22.5 pmol, 30 min), a neurokinin ligand, had no effect on NMDA-induced behaviors, suggesting that the inhibitory effect of substance P is caused by the NH2-terminus. Pretreatment with D-Pro2,D-Phe7 substance P-(1-7), a SP-(1-7) antagonist, potentiated NMDA activity, suggesting a tonic inhibitory effect of the substance P NH2-terminus. Desensitization to NMDA typically develops when NMDA is injected at 2 min intervals. While pretreatment with SP-(1-7) inhibited NMDA, coadministration of SP-(1-7) (22.5 pmol), with the first of four injections of NMDA, first inhibited but then potentiated responses to each challenge with NMDA. Coadministration of the same dose of SP-(1-7) with the fourth injection of NMDA immediately potentiated the response to NMDA.(ABSTRACT TRUNCATED AT 250 WORDS)

Direct simulation of electroosmosis around a spherical particle with inhomogeneously acquired surface charge.

PubMed

Alizadeh, Amer; Wang, Moran

2017-03-01

Uncovering electroosmosis around an inhomogeneously acquired charge spherical particle in a confined space could provide detailed insights into its broad applications from biology to geology. In the present study, we developed a direct simulation method with the effects of inhomogeneously acquired charges on the particle surface considered, which has been validated by the available analytical and experimental data. Modeling results reveal that the surface charge and zeta potential, which are acquired through chemical interactions, strongly depend on the local solution properties and the particle size. The surface charge and zeta potential of the particle would significantly vary with the tangential positions on the particle surface by increasing the particle radius. Moreover, regarding the streaming potential for a particle-fluid tube system, our results uncover that the streaming potential has a reverse relation with the particle size in a micro or nanotube. To explain this phenomenon, we present a simple relation that bridges the streaming potential with the particle size and tube radius, zeta potential, bulk and surface conductivity. This relation could predict good results specifically for higher ion concentrations and provide deeper understanding of the particle size effects on the streaming potential measurements of the particle fluid tube system. © 2016 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Draft Genome Sequence of Serratia sp. Strain M24T3, Isolated from Pinewood Disease Nematode Bursaphelenchus xylophilus

PubMed Central

Proença, Diogo Neves; Espírito Santo, Christophe; Grass, Gregor

2012-01-01

Here we report the draft genome sequence of Serratia sp. strain M24T3, which is associated with pinewood nematode Bursaphelenchus xylophilus, the causative agent of pine wilt disease. Serratia sp. strain M24T3 has been identified as a bionematocide for B. xylophilus in vitro, and multiple genes potentially involved in virulence and nematotoxity were identified. PMID:22740681

Draft genome sequence of Serratia sp. strain M24T3, isolated from pinewood disease nematode Bursaphelenchus xylophilus.

PubMed

Proença, Diogo Neves; Espírito Santo, Christophe; Grass, Gregor; Morais, Paula V

2012-07-01

Here we report the draft genome sequence of Serratia sp. strain M24T3, which is associated with pinewood nematode Bursaphelenchus xylophilus, the causative agent of pine wilt disease. Serratia sp. strain M24T3 has been identified as a bionematocide for B. xylophilus in vitro, and multiple genes potentially involved in virulence and nematotoxity were identified.

Discovery of Cryptophasa Lewin, 1805 (Lepidoptera: Xyloryctidae) from Indonesia with the descriptions of three new species.

PubMed

Sutrisno, Hari; Watung, Jackson F; Suwito, Awit

2015-07-30

Three new species of Cryptophasa Lewin, 1805 are described from eastern Indonesia: C. watungi Sutrisno & Suwito, 2015 sp. nov., C. kwerbaensis Sutrisno & Suwito, 2015 sp. nov., and C. choliki Sutrisno & Suwito, 2015 sp. nov. Each species is described based on adult external and genital characters. The potential apomorphic character in male genitalia of Cryptophasa, the shape of the uncus, is discussed.

Naming Potentially Endangered Parasites: Foliicolous Mycobiota of Dimorphandra wilsonii, a Highly Threatened Brazilian Tree Species.

PubMed

da Silva, Meiriele; Pinho, Danilo B; Pereira, Olinto L; Fernandes, Fernando M; Barreto, Robert W

2016-01-01

A survey of foliicolous fungi associated with Dimorphandra wilsonii and Dimorphandra mollis (Fabaceae) was conducted in the state of Minas Gerais, Brazil. Dimorphandra wilsonii is a tree species native to the Brazilian Cerrado that is listed as critically endangered. Fungi strictly depending on this plant species may be on the verge of co-extinction. Here, results of the pioneering description of this mycobiota are provided to contribute to the neglected field of microfungi conservation. The mycobiota of D. mollis, which is a common species with a broad geographical distribution that co-occurs with D. wilsonii, was examined simultaneously to exclude fungal species occurring on both species from further consideration for conservation because microfungi associated with D. wilsonii should not be regarded as under threat of co-extinction. Fourteen ascomycete fungal species were collected, identified, described and illustrated namely: Byssogene wilsoniae sp. nov., Geastrumia polystigmatis, Janetia dimorphandra-mollis sp. nov., Janetia wilsoniae sp. nov., Johansonia chapadiensis, Microcalliopsis dipterygis, Phillipsiella atra, Piricauda paraguayensis, Pseudocercospora dimorphandrae sp. nov., Pseudocercosporella dimorphandrae sp. nov., Ramichloridiopsis wilsoniae sp. and gen. nov., Stomiopeltis suttoniae, Trichomatomyces byrsonimae and Vesiculohyphomyces cerradensis. Three fungi were exclusively found on D. wilsonii and were regarded as potentially threatened of extinction: B. wilsoniae, J. wilsoniae and R. wilsoniae.

Naming Potentially Endangered Parasites: Foliicolous Mycobiota of Dimorphandra wilsonii, a Highly Threatened Brazilian Tree Species

PubMed Central

da Silva, Meiriele; Pinho, Danilo B.; Pereira, Olinto L.; Fernandes, Fernando M.; Barreto, Robert W.

2016-01-01

A survey of foliicolous fungi associated with Dimorphandra wilsonii and Dimorphandra mollis (Fabaceae) was conducted in the state of Minas Gerais, Brazil. Dimorphandra wilsonii is a tree species native to the Brazilian Cerrado that is listed as critically endangered. Fungi strictly depending on this plant species may be on the verge of co-extinction. Here, results of the pioneering description of this mycobiota are provided to contribute to the neglected field of microfungi conservation. The mycobiota of D. mollis, which is a common species with a broad geographical distribution that co-occurs with D. wilsonii, was examined simultaneously to exclude fungal species occurring on both species from further consideration for conservation because microfungi associated with D. wilsonii should not be regarded as under threat of co-extinction. Fourteen ascomycete fungal species were collected, identified, described and illustrated namely: Byssogene wilsoniae sp. nov., Geastrumia polystigmatis, Janetia dimorphandra-mollis sp. nov., Janetia wilsoniae sp. nov., Johansonia chapadiensis, Microcalliopsis dipterygis, Phillipsiella atra, Piricauda paraguayensis, Pseudocercospora dimorphandrae sp. nov., Pseudocercosporella dimorphandrae sp. nov., Ramichloridiopsis wilsoniae sp. and gen. nov., Stomiopeltis suttoniae, Trichomatomyces byrsonimae and Vesiculohyphomyces cerradensis. Three fungi were exclusively found on D. wilsonii and were regarded as potentially threatened of extinction: B. wilsoniae, J. wilsoniae and R. wilsoniae. PMID:26910334

REGIONAL ASSESSMENT OF LAND USE IMPACTS ON STREAM CHANNEL HABITAT IN THE MIDDLE COLUMBIA RIVER BASIN

EPA Science Inventory

Many human land uses and land cover modifications (e.g., logging, grazing, roads) tend to increase erosion, leading to an increase in fine sediment supplied to streams and potentially degrading aquatic habitat for benthic organisms. This study evaluated potential human impacts o...

Long-term bed degradation in Maryland streams (phase 2) : Blue Ridge and western Piedmont provinces [research summary].

DOT National Transportation Integrated Search

2012-03-01

Problem: : Estimation of potential long-term down-cutting of the stream bed is necessary for evaluation and design of bridges for scour and culverts for fish passage. Existing guidelines for assessing this potential long-term bed degradation (LTBD) i...

Long-term bed degradation in Maryland streams (phase 2) : Blue Ridge and Western Piedmont provinces.

DOT National Transportation Integrated Search

2012-03-01

Estimation of potential long-term down-cutting of the stream bed is necessary for evaluation and design of bridges for scour and culverts for fish passage. The purpose of this study has been to improve predictions of this potential long-term bed degr...

Draft Genome Sequence of Leptolyngbya sp. KIOST-1, a Filamentous Cyanobacterium with Biotechnological Potential for Alimentary Purposes

PubMed Central

Kim, Ji Hyung

2016-01-01

Here, we report the draft genome of cyanobacterium Leptolyngbya sp. KIOST-1 isolated from a microalgal culture pond in South Korea. The genome consists of 13 contigs containing 6,320,172 bp, and a total of 5,327 coding sequences were predicted. This genomic information will allow further exploitation of its biotechnological potential for alimentary purposes. PMID:27635005

Characterization of Amphora sp., a newly isolated diatom wild strain, potentially usable for biodiesel production.

PubMed

Chtourou, Haifa; Dahmen, Ines; Jebali, Ahlem; Karray, Fatma; Hassairi, Ilem; Abdelkafi, Slim; Ayadi, Habib; Sayadi, Sami; Dhouib, Abdelhafidh

2015-07-01

Microalgae as feedstock for biofuel production have attracted serious consideration as an important sustainable source of energy. For biodiesel production with microalgae, a series of consecutive processes should be performed as selection of adequate microalgal strains, mass culture, cell harvesting, oil extraction and transesterification. The aim of this study was to investigate the growth and lipid accumulation of a new isolated marine microalgal strain by optimizing culture medium composition and applying different stressful culture conditions. Microalga CTM 20023 was isolated from the evaporating salt-ponds at Sfax, Tunisia, using serial-dilution technique from enriched cultures. Phylogenetic analysis based on SSU rDNA and rbcL-3P sequences attributed this isolate to a new species of the Amphora genus. This wild strain possesses rapid gravity sedimentation of 2.91 m h(-1), suitable for an easy and low-cost biomass harvest. The optimization of the composition of the culture medium through statistical experimental designs improved the specific growth rate of Amphora sp. from 0.149 to 0.262 day(-1) and increased its 15-day culture biomass production from 465 to 2200 mg L(-1) (dw) and its lipid content from 140 to 370 mg g(-1) (dw). Highest biomass productivity of 178 mg L(-1) day(-1) was achieved at the 10th day of culture. Highest lipid content of 530 mg g(-1) (dw) was obtained under phosphorus starvation and 64.34% of these lipids were saturated fatty acids. A first growth stage, in optimized condition, would thus offer the maximum productivity for an algal biomass feed stream, followed by second stressful stage for lipid accumulation, thus suitable for biodiesel production.

Continuous desulfurization and bacterial community structure of an integrated bioreactor developed to treat SO2 from a gas stream.

PubMed

Lin, Jian; Li, Lin; Ding, Wenjie; Zhang, Jingying; Liu, Junxin

2015-11-01

Sulfide dioxide (SO2) is often released during the combustion processes of fossil fuels. An integrated bioreactor with two sections, namely, a suspended zone (SZ) and immobilized zone (IZ), was applied to treat SO2 for 6months. Sampling ports were set in both sections to investigate the performance and microbial characteristics of the integrated bioreactor. SO2 was effectively removed by the synergistic effect of the SZ and IZ, and more than 85% removal efficiency was achieved at steady state. The average elimination capacity of SO2 in the bioreactor was 2.80g/(m(3)·hr) for the SZ and 1.50g/(m(3)·hr) for the IZ. Most SO2 was eliminated in the SZ. The liquid level of the SZ and the water content ratio of the packing material in the IZ affected SO2 removal efficiency. The SZ served a key function not only in SO2 elimination, but also in moisture maintenance for the IZ. The desired water content in IZ could be feasibly maintained without any additional pre-humidification facilities. Clone libraries of 16S rDNA directly amplified from the DNA of each sample were constructed and sequenced to analyze the community composition and diversity in the individual zones. The desulfurization bacteria dominated both zones. Paenibacillus sp. was present in both zones, whereas Ralstonia sp. existed only in the SZ. The transfer of SO2 to the SZ involved dissolution in the nutrient solution and biodegradation by the sulfur-oxidizing bacteria. This work presents a potential biological treatment method for waste gases containing hydrophilic compounds. Copyright © 2015. Published by Elsevier B.V.

Chytridiomycosis of Marine Diatoms-The Role of Stress Physiology and Resistance in Parasite-Host Recognition and Accumulation of Defense Molecules.

PubMed

Scholz, Bettina; Küpper, Frithjof C; Vyverman, Wim; Ólafsson, Halldór G; Karsten, Ulf

2017-01-25

Little is known about the role of chemotaxis in the location and attachment of chytrid zoospores to potential diatom hosts. Hypothesizing that environmental stress parameters affect parasite-host recognition, four chytrid-diatom tandem cultures ( Chytridium sp./ Navicula sp., Rhizophydium type I/ Nitzschia sp., Rhizophydium type IIa/ Rhizosolenia sp., Rhizophydium type IIb/ Chaetoceros sp.) were used to test the chemotaxis of chytrid zoospores and the presence of potential defense molecules in a non-contact-co-culturing approach. As potential triggers in the chemotaxis experiments, standards of eight carbohydrates, six amino acids, five fatty acids, and three compounds known as compatible solutes were used in individual and mixed solutions, respectively. In all tested cases, the whole-cell extracts of the light-stressed (continuous light exposure combined with 6 h UV radiation) hosts attracted the highest numbers of zoospores (86%), followed by the combined carbohydrate standard solution (76%), while all other compounds acted as weak triggers only. The results of the phytochemical screening, using biomass and supernatant extracts of susceptible and resistant host-diatom cultures, indicated in most of the tested extracts the presence of polyunsaturated fatty acids, phenols, and aldehydes, whereas the bioactivity screenings showed that the zoospores of the chytrid parasites were only significantly affected by the ethanolic supernatant extract of the resistant hosts.

Genomic, Proteomic, and Metabolite Characterization of Gemfibrozil-Degrading Organism Bacillus sp. GeD10.

PubMed

Kjeldal, Henrik; Zhou, Nicolette A; Wissenbach, Dirk K; von Bergen, Martin; Gough, Heidi L; Nielsen, Jeppe L

2016-01-19

Gemfibrozil is a widely used hypolipidemic and triglyceride lowering drug. Excess of the drug is excreted and discharged into the environment primarily via wastewater treatment plant effluents. Bacillus sp. GeD10, a gemfibrozil-degrader, was previously isolated from activated sludge. It is the first identified bacterium capable of degrading gemfibrozil. Gemfibrozil degradation by Bacillus sp. GeD10 was here studied through genome sequencing, quantitative proteomics and metabolite analysis. From the bacterial proteome of Bacillus sp. GeD10 1974 proteins were quantified, of which 284 proteins were found to be overabundant by more than 2-fold (FDR corrected p-value ≤0.032, fold change (log2) ≥ 1) in response to gemfibrozil exposure. Metabolomic analysis identified two hydroxylated intermediates as well as a glucuronidated hydroxyl-metabolite of gemfibrozil. Overall, gemfibrozil exposure in Bacillus sp. GeD10 increased the abundance of several enzymes potentially involved in gemfibrozil degradation as well as resulted in the production of several gemfibrozil metabolites. The potential catabolic pathway/modification included ring-hydroxylation preparing the substrate for subsequent ring cleavage by a meta-cleaving enzyme. The identified genes may allow for monitoring of potential gemfibrozil-degrading organisms in situ and increase the understanding of microbial processing of trace level contaminants. This study represents the first omics study on a gemfibrozil-degrading bacterium.

The Metastatic Potential and Chemoresistance of Human Pancreatic Cancer Stem Cells

PubMed Central

Bhagwandin, Vikash J.; Bishop, J. Michael; Wright, Woodring E.; Shay, Jerry W.

2016-01-01

Cancer stem cells (CSCs) typically have the capacity to evade chemotherapy and may be the principal source of metastases. CSCs for human pancreatic ductal carcinoma (PDAC) have been identified, but neither the metastatic potential nor the chemoresistance of these cells has been adequately evaluated. We have addressed these issues by examining side-population (SP) cells isolated from the Panc-1 and BxPC3 lines of human PDAC cells, the oncogenotypes of which differ. SP cells could be isolated from monolayers of Panc-1, but only from spheroids of BxPC3. Using orthotopic xenografts into the severely immunocompromised NSG mouse, we found that SP cells isolated from both cell lines produced tumors that were highly metastatic, in contrast to previous experience with PDAC cell lines. SP cells derived from both cell lines expressed the ABCG2 transporter, which was demonstrably responsible for the SP phenotype. SP cells gave rise to non-SP (NSP) cells in vitro and in vivo, a transition that was apparently due to posttranslational inhibition of the ABCG2 transporter. Twenty-two other lines of PDAC cells also expressed ABCG2. The sensitivity of PDAC SP cells to the vinca alkaloid vincristine could be greatly increased by verapamil, a general inhibitor of transporters. In contrast, verapamil had no effect on the killing of PDAC cells by gemcitabine, the current first-line therapeutic for PDAC. We conclude that the isolation of SP cells can be a convenient and effective tool for the study of PDAC CSCs; that CSCs may be the principal progenitors of metastasis by human PDAC; that the ABCG2 transporter is responsible for the SP phenotype in human PDAC cells, and may be a ubiquitous source of drug-resistance in PDAC, but does not confer resistance to gemcitabine; and that inhibition of ABCG2 might offer a useful adjunct in a therapeutic attack on the CSCs of PDAC. PMID:26859746

Hillslope-Riparian-Streamflow Interactions in a Discontinuous Permafrost Alpine Environment

NASA Astrophysics Data System (ADS)

Carey, S. K.

2004-12-01

Hillslope-riparian-streamflow interactions are poorly characterized in mountainous discontinuous permafrost environments. Permafrost underlain soils have a distinct soil profile, characterized by thick near-surface organic horizons atop ice-rich mineral substrates, whereas slopes without permafrost have thinner or absent organic soils overlying well drained mineral horizons. Riparian areas occur at the base of both seasonally frozen and permafrost slopes, yet a stronger hydrologic and soil transition occurs at slope bases with only seasonal frost. In a subarctic alpine catchment within the Wolf Creek Research Basin, Yukon, Canada, experiments were conducted between 2001 and 2003 to evaluate linkages along the slope-riparian-stream continuum during melt and post-melt periods. Water table, hydraulic head, stable isotope (d2H, d18O) and simple geochemical (pH, SpC, DOC) data were collected along transects during melt and summer periods. In soils with only seasonal frost, there was a downward piezometric gradient in slopes and upward gradient in riparian areas during melt. In contrast, permafrost soils did not show a recharge/discharge gradient between the slope and riparian zone. DOC declined and SpC increased with depth at all sites during melt. DOC was lower in riparian zones and areas without organic soils. SpC declined in soils as dilute meltwater entered the soil, yet it was difficult to establish spatial relations due to differences in melt timing. The similarity in stable isotope composition among sites indicated that the slopes were well flushed with snowmelt water to depth. DOC in streamflow was greatest on the ascending freshet hydrograph, and declined rapidly following melt. Streamflow SpC declined dramatically in response to dilute meltwater inputs and a decline in stream pH indicates flowpaths through organic horizons. Following melt, DOC concentrations declined rapidly in both slopes and riparian areas. In summer, water tables lowered in seasonally frozen slopes, yet an upward hydraulic gradient and near-surface water table was maintained in the riparian area. In permafrost slopes, water tables fell into mineral soils, increasing SpC and reducing DOC. Riparian water tables remained high and DOC was greater than the seasonally frozen soils, yet riparian zone hydraulic gradient reversed suggesting a small recharge gradient. In permafrost soil, riparian zone DOC was an order of magnitude higher than seasonally frozen riparian zones, which had DOC concentrations similar to streamflow. The similarity in stable isotope ratios among sites throughout the summer indicated that soil waters were dominated by water supplied during melt period. Rainfall waters had little long-term effect on slope and riparian isotopic ratios. Mixing analysis of geochemical and isotopic parameters indicates that during melt, most water was supplied via near surface organic layers, whereas later in the year, subsurface pathways predominated. Permafrost slope-riparian zones have a different hydraulic and geochemical interaction than seasonally frozen ones, yet their respective contribution to streamflow during different times of the year remains unclear at this time.

TRACING THE ORPHAN STREAM TO 55 kpc WITH RR LYRAE STARS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sesar, Branimir; Cohen, Judith G.; Bellm, Eric C.

2013-10-10

We report positions, velocities, and metallicities of 50 ab-type RR Lyrae (RRab) stars observed in the vicinity of the Orphan stellar stream. Using about 30 RRab stars classified as being likely members of the Orphan stream, we study the metallicity and the spatial extent of the stream. We find that RRab stars in the Orphan stream have a wide range of metallicities, from –1.5 dex to –2.7 dex. The average metallicity of the stream is –2.1 dex, identical to the value obtained by Newberg et al. using blue horizontal branch stars. We find that the most distant parts of themore » stream (40-50 kpc from the Sun) are about 0.3 dex more metal-poor than the closer parts (within ∼30 kpc), suggesting a possible metallicity gradient along the stream's length. We have extended the previous studies and have mapped the stream up to 55 kpc from the Sun. Even after a careful search, we did not identify any more distant RRab stars that could plausibly be members of the Orphan stream. If confirmed with other tracers, this result would indicate a detection of the end of the leading arm of the stream. We have compared the distances of Orphan stream RRab stars with the best-fit orbits obtained by Newberg et al. We find that model 6 of Newberg et al. cannot explain the distances of the most remote Orphan stream RRab stars, and conclude that the best fit to distances of Orphan stream RRab stars and to the local circular velocity is provided by potentials where the total mass of the Galaxy within 60 kpc is M{sub 60} ∼ 2.7 × 10{sup 11} M{sub ☉}, or about 60% of the mass found by previous studies. More extensive modeling that would consider non-spherical potentials and the possibility of misalignment between the stream and the orbit is highly encouraged.« less

Mycorrhizal inoculum potentials of pure reclamation materials and revegetated tailing sands from the Canadian oil sand industry.

PubMed

Bois, G; Piché, Y; Fung, M Y P; Khasa, D P

2005-05-01

Recent improvements in the management of oil sand tailings used by the Canadian oil sand industry have resulted in the production of composite tailing sands (CT): a new challenging material for reclamation work. Jack pine (Pinus banksiana Lamb.), hybrid poplar (Populus deltoides Bartr. ex Marsh. xPopulus nigra L.) and red clover (Trifolium pratense L.) plants were used in an 8-week greenhouse bioassay to evaluate the mycorrhizal inoculum potential of CT. This inoculum potential was compared with that of three other reclamation materials [common tailing sands (TS), deep overburden (OB) and muskeg peat (MK)], and with three sites reclaimed in 1982 (R82), 1988 (R88) and 1999 (R99). CT was devoid of active mycorrhizal propagules while all other materials showed some level of inoculum potential. Arbuscular mycorrhizal fungi were observed on roots of clover or poplar grown in TS, OB, and all substrates containing peat (MK, R82, R88 and R99). Pine roots were also colonized by vesicle-forming hyphae of an unidentified fine endophyte and by dark septate fungi. Ectomycorrhizas (ECM) were observed on pine and poplar grown in OB, MK, and in soils from the two older reclaimed sites (R82 and R88). Using morpho- and molecular typing, six ECM fungi were identified to the genus or species level: Laccaria sp., Thelephora americana, Wilcoxina sp. (E-strain), Tuber sp. (I-type), a Sebacinoid, and a Pezizales species. Laccaria sp. and Wilcoxina sp. were the most frequently observed ECM species.

A halotolerant thermostable lipase from the marine bacterium Oceanobacillus sp. PUMB02 with an ability to disrupt bacterial biofilms

PubMed Central

Seghal Kiran, George; Nishanth Lipton, Anuj; Kennedy, Jonathan; Dobson, Alan DW; Selvin, Joseph

2014-01-01

A halotolerant thermostable lipase was purified and characterized from the marine bacterium Oceanobacillus sp. PUMB02. This lipase displayed a high degree of stability over a wide range of conditions including pH, salinity, and temperature. It was optimally active at 30 °C and pH 8.0 respectively and was stable at higher temperatures (50–70 °C) and alkaline pH. The molecular mass of the lipase was approximately 31 kDa based on SDS-PAGE and MALDI-ToF fingerprint analysis. Conditions for enhanced production of lipase by Oceanobacillus sp. PUMB02 were attained in response surface method-guided optimization with factors such as olive oil, sucrose, potassium chromate, and NaCl being evaluated, resulting in levels of 58.84 U/ml being achieved. The biofilm disruption potential of the PUMB02 lipase was evaluated and compared with a marine sponge metagenome derived halotolerant lipase Lpc53E1. Good biofilm disruption activity was observed with both lipases against potential food pathogens such as Bacillus cereus MTCC1272, Listeria sp. MTCC1143, Serratia sp. MTCC4822, Escherichia coli MTCC443, Pseudomonas fluorescens MTCC1748, and Vibrio parahemolyticus MTCC459. Phase contrast microscopy, scanning electron microscopy, and confocal laser scanning microscopy showed very effective disruption of pathogenic biofilms. This study reveals that marine derived hydrolytic enzymes such as lipases may have potential utility in inhibiting biofilm formation in a food processing environment and is the first report of the potential application of lipases from the genus Oceanobacillus in biofilm disruption strategies. PMID:25482232

Denitrification potential in stream sediments impacted by acid mine drainage: Effects of pH, various electron donors, and iron

USGS Publications Warehouse

Baeseman, J.L.; Smith, R.L.; Silverstein, J.

2006-01-01

Acid mine drainage (AMD) contaminates thousands of kilometers of stream in the western United States. At the same time, nitrogen loading to many mountain watersheds is increasing because of atmospheric deposition of nitrate and increased human use. Relatively little is known about nitrogen cycling in acidic, heavy-metal-laden streams; however, it has been reported that one key process, denitrification, is inhibited under low pH conditions. The objective of this research was to investigate the capacity for denitrification in acidified streams. Denitrification potential was assessed in sediments from several Colorado AMD-impacted streams, ranging from pH 2.60 to 4.54, using microcosm incubations with fresh sediment. Added nitrate was immediately reduced to nitrogen gas without a lag period, indicating that denitrification enzymes were expressed and functional in these systems. First-order denitrification potential rate constants varied from 0.046 to 2.964 day-1. The pH of the microcosm water increased between 0.23 and 1.49 pH units during denitrification. Additional microcosm studies were conducted to examine the effects of initial pH, various electron donors, and iron (added as ferrous and ferric iron). Decreasing initial pH decreased denitrification; however, increasing pH had little effect on denitrification rates. The addition of ferric and ferrous iron decreased observed denitrification potential rate constants. The addition of glucose and natural organic matter stimulated denitrification potential. The addition of hydrogen had little effect, however, and denitrification activity in the microcosms decreased after acetate addition. These results suggest that denitrification can occur in AMD streams, and if stimulated within the environment, denitrification might reduce acidity. ?? Springer Science+Business Media, Inc. 2006.

Flow Field and Acoustic Predictions for Three-Stream Jets

NASA Technical Reports Server (NTRS)

Simmons, Shaun Patrick; Henderson, Brenda S.; Khavaran, Abbas

2014-01-01

Computational fluid dynamics was used to analyze a three-stream nozzle parametric design space. The study varied bypass-to-core area ratio, tertiary-to-core area ratio and jet operating conditions. The flowfield solutions from the Reynolds-Averaged Navier-Stokes (RANS) code Overflow 2.2e were used to pre-screen experimental models for a future test in the Aero-Acoustic Propulsion Laboratory (AAPL) at the NASA Glenn Research Center (GRC). Flowfield solutions were considered in conjunction with the jet-noise-prediction code JeNo to screen the design concepts. A two-stream versus three-stream computation based on equal mass flow rates showed a reduction in peak turbulent kinetic energy (TKE) for the three-stream jet relative to that for the two-stream jet which resulted in reduced acoustic emission. Additional three-stream solutions were analyzed for salient flowfield features expected to impact farfield noise. As tertiary power settings were increased there was a corresponding near nozzle increase in shear rate that resulted in an increase in high frequency noise and a reduction in peak TKE. As tertiary-to-core area ratio was increased the tertiary potential core elongated and the peak TKE was reduced. The most noticeable change occurred as secondary-to-core area ratio was increased thickening the secondary potential core, elongating the primary potential core and reducing peak TKE. As forward flight Mach number was increased the jet plume region decreased and reduced peak TKE.

`Skinny Milky Way please', says Sagittarius

NASA Astrophysics Data System (ADS)

Gibbons, S. L. J.; Belokurov, V.; Evans, N. W.

2014-12-01

Motivated by recent observations of the Sagittarius stream, we devise a rapid algorithm to generate faithful representations of the centroids of stellar tidal streams formed in a disruption of a progenitor of an arbitrary mass in an arbitrary potential. Our method works by releasing swarms of test particles at the Lagrange points around the satellite and subsequently evolving them in a combined potential of the host and the progenitor. We stress that the action of the progenitor's gravity is crucial to making streams that look almost indistinguishable from the N-body realizations, as indeed ours do. The method is tested on mock stream data in three different Milky Way potentials with increasing complexity, and is shown to deliver unbiased inference on the Galactic mass distribution out to large radii. When applied to the observations of the Sagittarius stream, our model gives a natural explanation of the stream's apocentric distances and the differential orbital precession. We, therefore, provide a new independent measurement of the Galactic mass distribution beyond 50 kpc. The Sagittarius stream model favours a light Milky Way with the mass 4.1 ± 0.4 × 1011 M⊙ at 100 kpc, which can be extrapolated to 5.6 ± 1.2 × 1011 M⊙ at 200 kpc. Such a low mass for the Milky Way Galaxy is in good agreement with estimates from the kinematics of halo stars and from the satellite galaxies (once Leo I is removed from the sample). It entirely removes the `Too Big To Fail Problem'.

Acoustic signal propagation and measurement in natural stream channels for application to surrogate bed load measurements: Halfmoon Creek, Colorado

USDA-ARS?s Scientific Manuscript database

Monitoring sediment-generated noise using submerged hydrophones is a surrogate method for measuring bed load transport in streams with the potential for improving estimates of bed load transport through widespread, inexpensive monitoring. Understanding acoustic signal propagation in natural stream e...

Seasonal nitrate uptake and denitrification potential in small headwater streams in the Willamette Valley, Oregon

EPA Science Inventory

Background/Question/Methods Headwater streams can serve as important sources and sinks for nitrogen (N) for downstream receiving waters. Prior research on N removal in small streams has largely focused on growing season conditions. Here we examine the influence of headwater...

LAND USE IMPACTS ON STREAM BED SUBSTRATE MODERATED BY GEOLOGY IN THE JOHN DAY BASIN, OREGON

EPA Science Inventory

Human land uses and land cover modifications (e.g., logging, agriculture, roads) can alter runoff and increase sediment supply to streams, potentially degrading aquatic habitat for benthic organisms and fish. This study used synoptic stream habitat survey data from a regional as...

Stream-Groundwater Interactions Along Streams of the Eastern Sierra Nevada, California: Implications for Assessing Potential Impacts of Flow Diversions

Treesearch

G. Mathias Kondolf

1989-01-01

One of the most fundamental hydrologic determinations to be made in assessing the probable impacts of flow diversions on riparian vegetation is whether flows are gaining or losing water to groundwater in the reach of interest. Flow measurements on eight streams in the Owens River and Mono Lake basins show that stream- groundwater interactions can produce substantial...

Hydropower assessment of Bolivia—A multisource satellite data and hydrologic modeling approach

USGS Publications Warehouse

Velpuri, Naga Manohar; Pervez, Shahriar; Cushing, W. Matthew

2016-11-28

This study produced a geospatial database for use in a decision support system by the Bolivian authorities to investigate further development and investment potentials in sustainable hydropower in Bolivia. The study assessed theoretical hydropower of all 1-kilometer (km) stream segments in the country using multisource satellite data and a hydrologic modeling approach. With the assessment covering the 2 million square kilometer (km2) region influencing Bolivia’s drainage network, the potential hydropower figures are based on theoretical yield assuming that the systems generating the power are 100 percent efficient. There are several factors to consider when determining the real-world or technical power potential of a hydropower system, and these factors can vary depending on local conditions. Since this assessment covers a large area, it was necessary to reduce these variables to the two that can be modeled consistently throughout the region, streamflow or discharge, and elevation drop or head. First, the Shuttle Radar Topography Mission high-resolution 30-meter (m) digital elevation model was used to identify stream segments with greater than 10 km2 of upstream drainage. We applied several preconditioning processes to the 30-m digital elevation model to reduce errors and improve the accuracy of stream delineation and head height estimation. A total of 316,500 1-km stream segments were identified and used in this study to assess the total theoretical hydropower potential of Bolivia. Precipitation observations from a total of 463 stations obtained from the Bolivian Servicio Nacional de Meteorología e Hidrología (Bolivian National Meteorology and Hydrology Service) and the Brazilian Agência Nacional de Águas (Brazilian National Water Agency) were used to validate six different gridded precipitation estimates for Bolivia obtained from various sources. Validation results indicated that gridded precipitation estimates from the Tropical Rainfall Measuring Mission (TRMM) reanalysis product (3B43) had the highest accuracies. The coarse-resolution (25-km) TRMM data were disaggregated to 5-km pixels using climatology information obtained from the Climate Hazards Group Infrared Precipitation with Stations dataset. About a 17-percent bias was observed in the disaggregated TRMM estimates, which was corrected using the station observations. The bias-corrected, disaggregated TRMM precipitation estimate was used to compute stream discharge using a regionalization approach. In regionalization approach, required homogeneous regions for Bolivia were derived from precipitation patterns and topographic characteristics using a k-means clustering approach. Using the discharge and head height estimates for each 1-km stream segment, we computed hydropower potential for 316,490 stream segments within Bolivia and that share borders with Bolivia. The total theoretical hydropower potential (TTHP) of these stream segments was found to be 212 gigawatts (GW). Out of this total, 77.4 GW was within protected areas where hydropower projects cannot be developed; hence, the remaining total theoretical hydropower in Bolivia (outside the protected areas) was estimated as 135 GW. Nearly 1,000 1-km stream segments, however, were within the boundaries of existing hydropower projects. The TTHP of these stream segments was nearly 1.4 GW, so the residual TTHP of the streams in Bolivia was estimated as 133 GW. Care should be exercised to understand and interpret the TTHP identified in this study because all the stream segments identified and assessed in this study cannot be harnessed to their full capacity; furthermore, factors such as required environmental flows, efficiency, economics, and feasibility need to be considered to better identify a more real-world hydropower potential. If environmental flow requirements of 20–40 percent are considered, the total theoretical power available reduces by 60–80 percent. In addition, a 0.72 efficiency factor further reduces the estimation by another 28 percent. This study provides the base theoretical hydropower potential for Bolivia, the next step is to identify optimal hydropower plant locations and factor in the principles to appraise a real-world power potential in Bolivia.

Four New Ladybug Species Belonging to Decadiomus Chapin (Coleoptera: Coccinellidae) from Puerto Rico.

PubMed

Segarra-Carmona, A E; Otero, M

2014-12-01

While searching for native natural enemies attacking invasive insect pests in Puerto Rico, we found four undescribed ladybug species belonging to the Caribbean ladybug genus Decadiomus Chapin. In this article, we describe the following species from Puerto Rico: Decadiomus seini n. sp., Decadiomus ramosi n. sp., Decadiomus hayuyai n. sp., and Decadiomus martorelli n. sp. Illustrations of the dorsal habitus, shape of prosternal carinae, and drawings of male and female genitalia are presented. We also present a key for Diomini of Puerto Rico and discuss their importance as potential biocontrol agents.

Differential effects of phosphoramidon on neurokinin A- and substance P-induced airflow obstruction and airway microvascular leakage in guinea-pig.

PubMed Central

Lötvall, J. O.; Elwood, W.; Tokuyama, K.; Barnes, P. J.; Chung, K. F.

1991-01-01

1. The effects of the inhaled neuropeptides, neurokinin A (NKA) and substance P (SP) on lung resistance (RL) and airway microvascular permeability were studied in anaesthetized guinea-pigs. 2. Single doses of inhaled NKA (3 x 10(-5), 1 x 10(-4), 3 x 10(-4) M; 45 breaths) and SP (1 x 10(-4), 3 x 10(-4), 1 x 10(-3); 45 breaths) caused a dose-dependent increase in both RL and airway microvascular leakage, assessed as extravasation of the albumin marker, Evans blue dye. 3. NKA at 1 x 10(-4) and 3 x 10(-4) M resulted in a significantly higher increase in RL than SP at the same doses. 4. Inhaled SP (3 x 10(-4) M; 45 breaths) caused significantly higher Evans blue dye extravasation in main bronchi and proximal intrapulmonary airways compared to the same dose of NKA. 5. Pretreatment with the specific inhibitor of neural endopeptidase (NEP24.11), phosphoramidon, caused an approximately 100 fold leftward shift of the RL responses to inhaled NKA and SP. 6. Phosphoramidon significantly potentiated both NKA- and SP-induced airway microvascular leakage at proximal intrapulmonary airways, but not at any other airway level. 7. Inhibition of NEP24.11 potentiate both the SP- or NKA-induced airflow obstruction to a larger extent than the induced airway microvascular leakage, suggesting that NEP24.11 is more important in the modulation of the airflow obstruction observed after these mediators. PMID:1725766

Differential effects of phosphoramidon on neurokinin A- and substance P-induced airflow obstruction and airway microvascular leakage in guinea-pig.

PubMed

Lötvall, J O; Elwood, W; Tokuyama, K; Barnes, P J; Chung, K F

1991-12-01

1. The effects of the inhaled neuropeptides, neurokinin A (NKA) and substance P (SP) on lung resistance (RL) and airway microvascular permeability were studied in anaesthetized guinea-pigs. 2. Single doses of inhaled NKA (3 x 10(-5), 1 x 10(-4), 3 x 10(-4) M; 45 breaths) and SP (1 x 10(-4), 3 x 10(-4), 1 x 10(-3); 45 breaths) caused a dose-dependent increase in both RL and airway microvascular leakage, assessed as extravasation of the albumin marker, Evans blue dye. 3. NKA at 1 x 10(-4) and 3 x 10(-4) M resulted in a significantly higher increase in RL than SP at the same doses. 4. Inhaled SP (3 x 10(-4) M; 45 breaths) caused significantly higher Evans blue dye extravasation in main bronchi and proximal intrapulmonary airways compared to the same dose of NKA. 5. Pretreatment with the specific inhibitor of neural endopeptidase (NEP24.11), phosphoramidon, caused an approximately 100 fold leftward shift of the RL responses to inhaled NKA and SP. 6. Phosphoramidon significantly potentiated both NKA- and SP-induced airway microvascular leakage at proximal intrapulmonary airways, but not at any other airway level. 7. Inhibition of NEP24.11 potentiate both the SP- or NKA-induced airflow obstruction to a larger extent than the induced airway microvascular leakage, suggesting that NEP24.11 is more important in the modulation of the airflow obstruction observed after these mediators.

Establishing physico-chemical reference conditions in Mediterranean streams according to the European Water Framework Directive.

PubMed

Sánchez-Montoya, María del Mar; Arce, Maria Isabel; Vidal-Abarca, María Rosario; Suárez, María Luisa; Prat, Narcís; Gómez, Rosa

2012-05-01

Type-specific physico-chemical reference conditions are required for the assessment of ecological status in the Water Framework Directive context, similarly to the biological and hydro-morphological elements. This directive emphasises that natural variability of quality elements in high status (reference condition) needs to be quantified. Mediterranean streams often present a marked seasonal pattern in hydrological, biological and geochemical processes which could affect physico-chemical reference conditions. This study establishes general physico-chemical reference conditions (oxygenation, nutrient, salinity and acidification conditions) for different Mediterranean stream types. 116 potential reference sites located in 23 Mediterranean catchments in Spain were sampled in spring, summer and autumn in 2003. All sites were subjected to a screening method for the selection of reference sites in Mediterranean streams (Mediterranean Reference Criteria) and classified using a pre-established stream typology that establishes five different stream types (temporary streams, evaporite-calcareous at medium altitude, siliceous headwaters, calcareous headwaters and large watercourses). Reference conditions (reference value and reference threshold equivalents to high-good class boundary) were calculated using two different methods according to the availability of reference sites: the reference site 75th percentile approach of all reference sites and the 25th percentile of the population approach. The majority of the studied potential reference sites (76 out of 116) were selected as reference sites. Regarding type-specific reference conditions, only siliceous headwaters could be considered different from the rest of stream types because lower conductivity and pH. All reference stream types presented seasonal differences as regards some parameters, except for temporary streams due to the high natural variation of this stream type. For those parameters which presented seasonal differences in a specific stream type, the least restrictive values were proposed as reference conditions. Copyright © 2012 Elsevier Ltd. All rights reserved.

Potential metal recovery from waste streams

USGS Publications Warehouse

Smith, Kathleen S.; Hageman, Philip L.; Plumlee, Geoffrey S.; Budahn, James R.; Bleiwas, Donald I.

2015-01-01

‘Waste stream’ is a general term that describes the total flow of waste from homes, businesses, industrial facilities, and institutions that are recycled, burned or isolated from the environment in landfills or other types of storage, or dissipated into the environment. The recovery and reuse of chemical elements from waste streams have the potential to decrease U.S. reliance on primary resources and imports, and to lessen unwanted dispersion of some potentially harmful elements into the environment. Additional benefits might include reducing disposal or treatment costs and decreasing the risk of future environmental liabilities for waste generators. Elemental chemistry and mineralogical residences of the elements are poorly documented for many types of waste streams.

Sp1 transcriptional activity is up-regulated by phosphatase 2A in dividing T lymphocytes.

PubMed

Lacroix, Isabelle; Lipcey, Carol; Imbert, Jean; Kahn-Perlès, Brigitte

2002-03-15

We have followed Sp1 expression in primary human T lymphocytes induced, via CD2 plus CD28 costimulation, to sustained proliferation and subsequent return to quiescence. Binding of Sp1 to wheat germ agglutinin lectin was not modified following activation, indicating that the overall glycosylation of the protein was unchanged. Sp1 underwent, instead, a major dephosphorylation that correlated with cyclin A expression and, thus, with cell cycle progression. A similar change was observed in T cells that re-entered cell cycle following secondary interleukin-2 stimulation, as well as in serum-induced proliferating NIH/3T3 fibroblasts. Phosphatase 2A (PP2A) appears involved because 1) treatment of dividing cells with okadaic acid or cantharidin inhibited Sp1 dephosphorylation and 2) PP2A dephosphorylated Sp1 in vitro and strongly interacted with Sp1 in vivo. Sp1 dephosphorylation is likely to increase its transcriptional activity because PP2A overexpression potentiated Sp1 site-driven chloramphenicol acetyltransferase expression in dividing Kit225 T cells and okadaic acid reversed this effect. This increase might be mediated by a stronger affinity of dephosphorylated Sp1 for DNA, as illustrated by the reduced DNA occupancy by hyperphosphorylated Sp factors from cantharidin- or nocodazole-treated cells. Finally, Sp1 dephosphorylation appears to occur throughout cell cycle except for mitosis, a likely common feature to all cycling cells.

Biomimicry of surfactant protein C.

PubMed

Brown, Nathan J; Johansson, Jan; Barron, Annelise E

2008-10-01

Since the widespread use of exogenous lung surfactant to treat neonatal respiratory distress syndrome, premature infant survival and respiratory morbidity have dramatically improved. Despite the effectiveness of the animal-derived surfactant preparations, there still remain some concerns and difficulties associated with their use. This has prompted investigation into the creation of synthetic surfactant preparations. However, to date, no clinically used synthetic formulation is as effective as the natural material. This is largely because the previous synthetic formulations lacked analogues of the hydrophobic proteins of the lung surfactant system, SP-B and SP-C, which are critical functional constituents. As a result, recent investigation has turned toward the development of a new generation of synthetic, biomimetic surfactants that contain synthetic phospholipids along with a mimic of the hydrophobic protein portion of lung surfactant. In this Account, we detail our efforts in creating accurate mimics of SP-C for use in a synthetic surfactant replacement therapy. Despite SP-C's seemingly simple structure, the predominantly helical protein is extraordinarily challenging to work with given its extreme hydrophobicity and structural instability, which greatly complicates the creation of an effective SP-C analogue. Drawing inspiration from Nature, two promising biomimetic approaches have led to the creation of rationally designed biopolymers that recapitulate many of SP-C's molecular features. The first approach utilizes detailed SP-C structure-activity relationships and amino acid folding propensities to create a peptide-based analogue, SP-C33. In SP-C33, the problematic and metastable polyvaline helix is replaced with a structurally stable polyleucine helix and includes a well-placed positive charge to prevent aggregation. SP-C33 is structurally stable and eliminates the association propensity of the native protein. The second approach follows the same design considerations but makes use of a non-natural, poly-N-substituted glycine or "peptoid" scaffold to circumvent the difficulties associated with SP-C. By incorporating unique biomimetic side chains in a non-natural backbone, the peptoid mimic captures both SP-C's hydrophobic patterning and its helical secondary structure. Despite the differences in structure, both SP-C33 and the SP-C peptoid mimic capture many requisite features of SP-C. In a surfactant environment, these analogues also replicate many of the key surface activities necessary for a functional biomimetic surfactant therapy while overcoming the difficulties associated with the natural protein. With improved stability, greater production potential, and elimination of possible pathogenic contamination, these biomimetic surfactant formulations offer not only the potential to improve the treatment of respiratory distress syndrome but also the opportunity to treat other respiratory-related disorders.

Carboxyhemoglobin Levels Induced by Cigarette Smoking Outdoors in Smokers.

PubMed

Schimmel, Jonathan; George, Naomi; Schwarz, John; Yousif, Sami; Suner, Selim; Hack, Jason B

2018-03-01

Non-invasive screening of carboxyhemoglobin saturation (SpCO) in the emergency department to detect occult exposure is increasingly common. The SpCO threshold to consider exposure in smokers is up to 9%. The literature supporting this cutoff is inadequate, and the impact of active smoking on SpCO saturation remains unclear. The primary objective was to characterize baseline SpCO in a cohort of smokers outdoors. Secondary objectives were to explore the impact of active smoking on SpCO and to compare SpCO between smokers and non-smokers. This was a prospective cohort pilot study in two outdoor urban public areas in the USA, in a convenience sample of adult smokers. SpCO saturations were assessed non-invasively before, during, and 2 min after cigarette smoking with pulse CO-oximetry. Analyses included descriptive statistics, correlations, and a generalized estimating equation model. Eighty-five smokers had mean baseline SpCO of 2.7% (SD 2.6) and peak of 3.1% (SD 2.9), while 15 controls had SpCO 1.3% (SD 1.3). This was a significant difference. Time since last cigarette was associated with baseline SpCO, and active smoking increased mean SpCO. There was correlation among individual smokers' SpCO levels before, during, and 2 min after smoking, indicating smokers tended to maintain their baseline SpCO level. This study is the first to measure SpCO during active smoking in an uncontrolled environment. It suggests 80% of smokers have SpCO ≤ 5%, but potentially lends support for the current 9% as a threshold, depending on clinical context.

The Military Efficacy of Individual Water Purification Filters.

DTIC Science & Technology

1990-12-01

criteria. ’t *.;as a.Lso serv ea that the KPF units grew opportunistic Pseudomonas sp . on the oroduct water side of the filters, which could have a...small pathogenic protozoan cysts such as Cryptospor-dium parvum, Giardia lamblia, and Entamoeba coli, from water over the effective use life of the...of heterotrophic bacteria such as Pseudoronas sP , Flavobacterium Sp , and other potentially harmfui organisms inside of the units. Enteric viruses are

Pesticides in U.S. streams and rivers: occurrence and trends during 1992-2011

USGS Publications Warehouse

Stone, Wesley W.; Gilliom, Robert J.; Ryberg, Karen R.

2014-01-01

During the 20 years from 1992 to 2011, pesticides were found at concentrations that exceeded aquatic-life benchmarks in many rivers and streams that drain agricultural, urban, and mixed-land use watersheds. Overall, the proportions of assessed streams with one or more pesticides that exceeded an aquatic-life benchmark were very similar between the two decades for agricultural (69% during 1992−2001 compared to 61% during 2002−2011) and mixed-land-use streams (45% compared to 46%). Urban streams, in contrast, increased from 53% during 1992−2011 to 90% during 2002−2011, largely because of fipronil and dichlorvos. The potential for adverse effects on aquatic life is likely greater than these results indicate because potentially important pesticide compounds were not included in the assessment. Human-health benchmarks were much less frequently exceeded, and during 2002−2011, only one agricultural stream and no urban or mixed-land-use streams exceeded human-health benchmarks for any of the measured pesticides. Widespread trends in pesticide concentrations, some downward and some upward, occurred in response to shifts in use patterns primarily driven by regulatory changes and introductions of new pesticides.

Invasive European bird cherry disrupts stream-riparian linkages: effects on terrestrial invertebrate prey subsidies for juvenile coho salmon

USGS Publications Warehouse

Roon, David A.; Wipfli, Mark S.; Wurtz, Tricia L.; Blanchard, Arny L.

2016-01-01

The spread of invasive species in riparian forests has the potential to affect both terrestrial and aquatic organisms linked through cross-ecosystem resource subsidies. However, this potential had not been explored in regards to terrestrial prey subsidies for stream fishes. To address this, we examined the effects of an invasive riparian tree, European bird cherry (EBC, Prunus padus), spreading along urban Alaskan salmon streams, by collecting terrestrial invertebrates present on the foliage of riparian trees, their subsidies to streams, and their consumption by juvenile coho salmon (Oncorhynchus kisutch). Riparian EBC supported four to six times less terrestrial invertebrate biomass on its foliage and contributed two to three times lower subsidies relative to native deciduous trees. This reduction in terrestrial invertebrate biomass was consistent between two watersheds over 2 years. In spite of this reduction in terrestrial prey resource input, juvenile coho salmon consumed similar levels of terrestrial invertebrates in stream reaches bordered by EBC. Although we did not see ecological effects extending to stream salmonids, reduced terrestrial prey subsidies to streams are likely to have negative consequences as EBC continues to spread.

Antibacterial metabolites synthesized by psychrotrophic bacteria isolated from cold-freshwater environments.

PubMed

Barros, Javier; Becerra, José; González, Carlos; Martínez, Miguel

2013-03-01

The ability of three psychrotrophic Gram-negative bacilli isolated from Chilean Patagonian cold freshwater rivers to produce bioactive metabolites was evaluated. The strains were isolated from cold waters rivers and identified by their biochemical properties and 16S rRNA gene analysis. The metabolites fractions showing antibacterial activity were obtained by solvent extraction and partially characterized by gas-mass chromatography (GC-MS). Antibacterial activity of the fractions was evaluated by an agar-well diffusion test upon 14 bacterial strains, both Gram positive and Gram negative. Thermal and proteolytic resistances of the antibacterial metabolites fractions were also evaluated. Molecular analysis allows the identification of the three Patagonian strains as Pseudomonas sp. RG-6 (Pseudomonas brenneri 99.6 % identity), Pseudomonas sp. RG-8 (Pseudomonas trivialis 99.6 % identity) and Yersinia sp. RP-3 (Yersinia aldovae 99.5 % identity). These extracts were able to inhibit both Gram-positive and Gram-negative bacteria but not Listeria monocytogenes. The antibacterial activity of the filtrated supernatants was lost at temperatures ≥60 °C, and was not affected by proteinase K treatment. The chemical structure of the active molecule remains to be elucidated, although the GC-MS analysis of the filtrates suggests that compounds like sesquiterpenes derivatives from β-maaliene or δ-selinene could be responsible of this antibacterial activity. Pristine cold freshwater streams showed to be interesting sources of metabolites-producing microorganisms with antibacterial activity.

Spatio-temporal variability in the distribution of ground-dwelling riparian spiders and their potential role in water-to-land energy transfer along Hong Kong forest streams

PubMed Central

Yuen, Elaine Y.L.

2015-01-01

Terrestrial predators have been shown to aggregate along stream margins during periods when the emergence of adult aquatic insects is high. Such aggregation may be especially evident when terrestrial surroundings are relatively unproductive, and there are steep productivity gradients across riparia. In tropical forests, however, the productivity of inland terrestrial habitats may decrease the resource gradient across riparia, thus lessening any tendency of terrestrial predators to aggregate along stream margins. We elucidated the spatio-temporal variability in the distribution of ground-dwelling spiders and terrestrial arthropod prey within the riparia of two forest streams in tropical Hong Kong by sampling arthropods along transects at different distances from the streams during the wet and dry seasons. Environmental variables that may have influenced spider distributions were also measured. The vast majority of ground-dwelling predators along all transects at both sites were spiders. Of the three most abundant spiders captured along stream margins, Heteropoda venatoria (Sparassidae) and Draconarius spp. (Agelenidae) were terrestrially inclined and abundant during both seasons. Only Pardosa sumatrana (Lycosidae) showed some degree of aggregation at the stream banks, indicating a potential reliance on aquatic insect prey. Circumstantial evidence supports this notion, as P. sumatrana was virtually absent during the dry season when aquatic insect emergence was low. In general, forest-stream riparia in Hong Kong did not appear to be feeding hotspots for ground-dwelling predators. The lack of aggregation in ground-dwelling spiders in general may be attributed to the low rates of emergence of aquatic insects from the study streams compared to counterpart systems, as well as the potentially high availability of terrestrial insect prey in the surrounding forest. Heteropoda venatoria, the largest of the three spiders maintained a high biomass (up to 28 mg dry weight/m2) in stream riparia, exceeding the total standing stock of all other spiders by 2–80 times. The biomass and inland distribution of H. venatoria could make it a likely conduit for the stream-to-land transfer of energy. PMID:26246974

Event-Related Potentials Index Segmentation of Nonsense Sounds

ERIC Educational Resources Information Center

Sanders, Lisa D.; Ameral, Victoria; Sayles, Kathryn

2009-01-01

To understand the world around us, continuous streams of information including speech must be segmented into units that can be mapped onto stored representations. Recent evidence has shown that event-related potentials (ERPs) can index the online segmentation of sound streams. In the current study, listeners were trained to recognize sequences of…

The zeta potential of extended dielectrics and conductors in terms of streaming potential and streaming current measurements.

PubMed

Gallardo-Moreno, Amparo M; Vadillo-Rodríguez, Virginia; Perera-Núñez, Julia; Bruque, José M; González-Martín, M Luisa

2012-07-21

The electrical characterization of surfaces in terms of the zeta potential (ζ), i.e., the electric potential contributing to the interaction potential energy, is of major importance in a wide variety of industrial, environmental and biomedical applications in which the integration of any material with the surrounding media is initially mediated by the physico-chemical properties of its outer surface layer. Among the different existing electrokinetic techniques for obtaining ζ, streaming potential (V(str)) and streaming current (I(str)) are important when dealing with flat-extended samples. Mostly dielectric materials have been subjected to this type of analysis and only a few papers can be found in the literature regarding the electrokinetic characterization of conducting materials. Nevertheless, a standardized procedure is typically followed to calculate ζ from the measured data and, importantly, it is shown in this paper that such a procedure leads to incorrect zeta potential values when conductors are investigated. In any case, assessment of a reliable numerical value of ζ requires careful consideration of the origin of the input data and the characteristics of the experimental setup. In particular, it is shown that the cell resistance (R) typically obtained through a.c. signals (R(a.c.)), and needed for the calculations of ζ, always underestimates the zeta potential values obtained from streaming potential measurements. The consideration of R(EK), derived from the V(str)/I(str) ratio, leads to reliable values of ζ when dielectrics are investigated. For metals, the contribution of conductivity of the sample to the cell resistance provokes an underestimation of R(EK), which leads to unrealistic values of ζ. For the electrical characterization of conducting samples I(str) measurements constitute a better choice. In general, the findings gathered in this manuscript establish a measurement protocol for obtaining reliable zeta potentials of dielectrics and conductors based on the intrinsic electrokinetic behavior of both types of samples.

Draft Genome Sequence of Leptolyngbya sp. KIOST-1, a Filamentous Cyanobacterium with Biotechnological Potential for Alimentary Purposes.

PubMed

Kim, Ji Hyung; Kang, Do-Hyung

2016-09-15

Here, we report the draft genome of cyanobacterium Leptolyngbya sp. KIOST-1 isolated from a microalgal culture pond in South Korea. The genome consists of 13 contigs containing 6,320,172 bp, and a total of 5,327 coding sequences were predicted. This genomic information will allow further exploitation of its biotechnological potential for alimentary purposes. Copyright © 2016 Kim and Kang.

Tropical small streams are a consistent source of methane

NASA Astrophysics Data System (ADS)

Vihermaa, Leena; Waldron, Susan

2013-04-01

To date only a few studies have quantified diffusive methane emissions from headwater streams therefore the magnitude and seasonal variation of these emissions remain poorly understood. Here we present results from two Western Amazonian small streams (first and second order) in Tambopata National Reserve, Peru. Towards the end of wet season, April-May 2012, the streams were sampled using a static floating chamber to accumulate methane. Samples were drawn from the headspace twice daily over period of four days on three separate occasions. The methane concentrations were analysed using a gas chromatograph and the linear part of concentration increase used to calculate the flux rates. The streams were consistently outgassing methane. The seasonally active first order stream outgassed 6 ±2.4 nmol CH4-C m-2 s-1 and the second order stream 20 ±4.0 nmol CH4-C m-2 s-1. The latter flux rate is comparable to fluxes measured from seasonally flooded Amazonian forest in previous studies. The range measured in our streams is comparable to previous results in temperate streams and the lower end of fluxes observed in some peatland streams. The only other study on Amazonian small streams detected methane fluxes that were 100 times greater than those measured here. Depending on the density of small streams in Amazonian basin and the prevalent flux rate, the fluvial methane fluxes may constitute a significant global warming potential. Upscaling to the Amazon basin, assuming small stream density of 0.2 %, as was found at our field site, and the flux rates detected, yields an annual global warming potential equal to approximately 1.5 Mt of CO2 which is of minor importance compared to aquatic CO2-C flux of 500 Mt yr-1 from the basin. However, if the higher fluxes detected in the previous study were prevalent, the basin wide methane flux could become significant. Further studies are needed to establish the stream density in the Amazon basin and typical methane flux rates.

Draft genome sequence of the novel strain Pseudomonas sp. 10B238 with potential ability to produce antibiotics from deep-sea sediment.

PubMed

Pan, Hua-Qi; Hu, Jiang-Chun

2015-10-01

Pseudomonas sp. 10B238 was a putatively novel species of Pseudomonas, isolated from a deep-sea sediment of the South China Sea, which had the genetic potential to produce secondary metabolites related to nonribosomal peptides (NRPs), as well as showed moderate antimicrobial activities. Here we report a high quality draft genome of Pseudomonas sp. 10B238, which comprises 4,933,052bp with the G+C content of 60.23%. A total of 11 potential secondary metabolite biosynthetic gene clusters were predicted, including a NRP for new peptide siderophore. And many anaerobic respiratory terminal enzymes were found for life in deep-sea environments. Our results may provide insights into biosynthetic pathway for antimicrobial bioactive compounds and be helpful to understand the physiological characteristic of this species. Copyright © 2015 Elsevier B.V. All rights reserved.

Coupling GIS and multivariate approaches to reference site selection for wadeable stream monitoring.

PubMed

Collier, Kevin J; Haigh, Andy; Kelly, Johlene

2007-04-01

Geographic Information System (GIS) was used to identify potential reference sites for wadeable stream monitoring, and multivariate analyses were applied to test whether invertebrate communities reflected a priori spatial and stream type classifications. We identified potential reference sites in segments with unmodified vegetation cover adjacent to the stream and in >85% of the upstream catchment. We then used various landcover, amenity and environmental impact databases to eliminate sites that had potential anthropogenic influences upstream and that fell into a range of access classes. Each site identified by this process was coded by four dominant stream classes and seven zones, and 119 candidate sites were randomly selected for follow-up assessment. This process yielded 16 sites conforming to reference site criteria using a conditional-probabilistic design, and these were augmented by an additional 14 existing or special interest reference sites. Non-metric multidimensional scaling (NMS) analysis of percent abundance invertebrate data indicated significant differences in community composition among some of the zones and stream classes identified a priori providing qualified support for this framework in reference site selection. NMS analysis of a range standardised condition and diversity metrics derived from the invertebrate data indicated a core set of 26 closely related sites, and four outliers that were considered atypical of reference site conditions and subsequently dropped from the network. Use of GIS linked to stream typology, available spatial databases and aerial photography greatly enhanced the objectivity and efficiency of reference site selection. The multi-metric ordination approach reduced variability among stream types and bias associated with non-random site selection, and provided an effective way to identify representative reference sites.

Inhibition of NFκB and Pancreatic Cancer Cell and Tumor Growth by Curcumin Is Dependent on Specificity Protein Down-regulation*

PubMed Central

Jutooru, Indira; Chadalapaka, Gayathri; Lei, Ping; Safe, Stephen

2010-01-01

Curcumin activates diverse anticancer activities that lead to inhibition of cancer cell and tumor growth, induction of apoptosis, and antiangiogenic responses. In this study, we observed that curcumin inhibits Panc28 and L3.6pL pancreatic cancer cell and tumor growth in nude mice bearing L3.6pL cells as xenografts. In addition, curcumin decreased expression of p50 and p65 proteins and NFκB-dependent transactivation and also decreased Sp1, Sp3, and Sp4 transcription factors that are overexpressed in pancreatic cancer cells. Because both Sp transcription factors and NFκB regulate several common genes such as cyclin D1, survivin, and vascular endothelial growth factor that contribute to the cancer phenotype, we also investigated interactions between Sp and NFκB transcription factors. Results of Sp1, Sp3, and Sp4 knockdown by RNA interference demonstrate that both p50 and p65 are Sp-regulated genes and that inhibition of constitutive or tumor necrosis factor-induced NFκB by curcumin is dependent on down-regulation of Sp1, Sp3, and Sp4 proteins by this compound. Curcumin also decreased mitochondrial membrane potential and induced reactive oxygen species in pancreatic cancer cells, and this pathway is required for down-regulation of Sp proteins in these cells, demonstrating that the mitochondriotoxic effects of curcumin are important for its anticancer activities. PMID:20538607

Evaluation of the biomethane potential from multiple waste streams for a proposed community scale anaerobic digester.

PubMed

Browne, James D; Allen, Eoin; Murphy, Jerry D

2013-01-01

This paper examines the biomethane potential from organic waste for a proposed community scale anaerobic digester in a rural town. The biomethane potential test is used to assess the suitability of waste streams for biomethane production and to examine the variation in biomethane potential between waste sub-streams. A methodology for accurately estimating the biomethane potential from multiple heterogeneous organic waste substrates is sought. Five main waste streams were identified as possible substrates for biogas production, namely Abattoir waste (consisting of paunch and de-watered activated sludge); cheese factory effluent; commercial and domestic food waste; pig slurry and waste water treatment sludge. The biomethane potential of these waste streams ranged from as low as 99 L CH4 kg VS(-1) for pig slurry to as high as 787 L CH4 kg VS(-1) for dissolved air floatation (DAF) sludge from a cheese effluent treatment plant. The kinetic behaviour of the biomethane production in the batch test is also examined. The objective of the paper is to suggest an optimum substrate mix in terms of biomethane yield per unit substrate for the proposed anaerobic digester. This should maximize the yield of biomethane per capital investment. Food waste displayed the highest biomethane yield (128 m(n)(3) t(-1)) followed by cheese waste (38 m(n)(3) t(-1)) and abattoir waste (36 m(n)(3) t(-1)). It was suggested that waste water sludge (16 m(n)(3) t(-1)) and pig slurry (4 m(n)(3) t(-1)) should not be digested. However, the biomethane potential test does not give information on the continuous operation of an anaerobic digester.

Distribution and histologic effects of intravenously administered amorphous nanosilica particles in the testes of mice

DOE Office of Scientific and Technical Information (OSTI.GOV)

Morishita, Yuki; Yoshioka, Yasuo, E-mail: yasuo@phs.osaka-u.ac.jp; Satoh, Hiroyoshi

Highlights: Black-Right-Pointing-Pointer There is rising concern regarding the potential health risks of nanomaterials. Black-Right-Pointing-Pointer Few studies have investigated the effect of nanomaterials on the reproductive system. Black-Right-Pointing-Pointer Here, we evaluated the intra-testicular distribution of nanosilica particles. Black-Right-Pointing-Pointer We showed that nanosilica particles can penetrate the blood-testis barrier. Black-Right-Pointing-Pointer These data provide basic information on ways to create safer nanomaterials. -- Abstract: Amorphous nanosilica particles (nSP) are being utilized in an increasing number of applications such as medicine, cosmetics, and foods. The reduction of the particle size to the nanoscale not only provides benefits to diverse scientific fields but also posesmore » potential risks. Several reports have described the in vivo and in vitro toxicity of nSP, but few studies have examined their effects on the male reproductive system. The aim of this study was to evaluate the testicular distribution and histologic effects of systemically administered nSP. Mice were injected intravenously with nSP with diameters of 70 nm (nSP70) or conventional microsilica particles with diameters of 300 nm (nSP300) on two consecutive days. The intratesticular distribution of these particles 24 h after the second injection was analyzed by transmission electron microscopy. nSP70 were detected within sertoli cells and spermatocytes, including in the nuclei of spermatocytes. No nSP300 were observed in the testis. Next, mice were injected intravenously with 0.4 or 0.8 mg nSP70 every other day for a total of four administrations. Testes were harvested 48 h and 1 week after the last injection and stained with hematoxylin-eosin for histologic analysis. Histologic findings in the testes of nSP70-treated mice did not differ from those of control mice. Taken together, our results suggest that nSP70 can penetrate the blood-testis barrier and the nuclear membranes of spermatocytes without producing apparent testicular injury.« less

Immunogenicity of adenovirus vaccines expressing the PCV2 capsid protein in pigs.

PubMed

Li, Delong; Du, Qian; Wu, Bin; Li, Juejun; Chang, Lingling; Zhao, Xiaomin; Huang, Yong; Tong, Dewen

2017-08-24

Porcine circovirus type 2 (PCV2) is the main pathogen of porcine circovirus associated disease (PCVAD), causing great economic losses in pig industry. In previous study, we constructed adenovirus vector vaccines expressing PCV2 Cap either modified with Intron A and WPRE, or CD40L and GMCSF, and evaluated all of these vaccines in mice and in pigs. Although Ad-A-C-W and Ad-CD40L-Cap-GMCSF could induce stronger immune responses than Ad-Cap, neither of them was better than commercial inactivated vaccine PCV2 SH-strain. In this study, secretory recombinant adenoviruses (Ad-A-spCap-W and Ad-A-spCD40L-spCap-spGMCSF-W) and non-secretory recombinant adenovirus Ad-A-CD40L-Cap-GMCSF-W were constructed, and identified by western blot and confocal laser microscope observation. The results of ELISA and VN showed that humoral immune responses induced by Ad-A-spCap-W and Ad-A-CD40L-Cap-GMCSF-W were not significantly different from SH-strain, but Ad-A-spCD40L-spCap-spGMCSF-W could induce significantly higher humoral immune response than SH-strain. Lymphocytes proliferative and cytokines releasing levels of Ad-A-spCap-W and Ad-A-CD40L-Cap-GMCSF-W were not significantly different from SH-strain, but Ad-A-spCD40L-spCap-spGMCSF-W was significantly higher than SH-strain. PCV2-challenge experiment showed that virus loads were significantly reduced in Ad-A-spCD40L-spCap-spGMCSF-W vaccinated group, and no obviously clinical and microscopic lesions were observed in Ad-A-spCD40L-spCap-spGMCSF-W vaccinated group. Altogether, these results demonstrate that recombinant adenovirus vaccine Ad-A-spCD40L-spCap-spGMCSF-W induces stronger immune responses and provides better protection than commercial inactivated vaccine PCV2 SH-strain, and suggest that Ad-A-spCD40L-spCap-spGMCSF-W could be a potential vaccine candidate against PCVAD. Copyright © 2017 Elsevier Ltd. All rights reserved.

Attenuation of Quorum Sensing Regulated Virulence of Pectobacterium carotovorum subsp. carotovorum through an AHL Lactonase Produced by Lysinibacillus sp. Gs50

PubMed Central

Garge, Sneha S.; Nerurkar, Anuradha S.

2016-01-01

Quorum sensing (QS) is a mechanism in which Gram negative bacterial pathogens sense their population density through acyl homoserine lactones (AHLs) and regulate the expression of virulence factors. Enzymatic degradation of AHLs by lactonases, known as quorum quenching (QQ), is thus a potential strategy for attenuating QS regulated bacterial infections. We characterised the QQ activity of soil isolate Lysinibacillus sp. Gs50 and explored its potential for controlling bacterial soft rot of crop plants. Lysinibacillus sp. Gs50 inactivated AHL, which could be restored upon acidification, suggested that inactivation was due to the lactone ring hydrolysis of AHL. Heterologous expression of cloned gene for putative hydrolase (792 bp) designated adeH from Lysinibacillus sp. Gs50 produced a ~29 kDa protein which degraded AHLs of varying chain length. Mass spectrometry analysis of AdeH enzymatic reaction product revealed that AdeH hydrolyses the lactone ring of AHL and hence is an AHL lactonase. Multiple sequence alignment of the amino acid sequence of AdeH showed that it belongs to the metallo- β- lactamase superfamily, has a conserved “HXHXDH” motif typical of AHL lactonases. KM for AdeH for C6HSL was found to be 3.089 μM and the specific activity was 0.8 picomol min-1μg-1. AdeH has not so far been reported from any Lysinibacillus sp. and has less than 40% identity with known AHL lactonases. Finally we found that Lysinibacillus sp. Gs50 can degrade AHL produced by Pectobacterium carotovorum subsp. carotovorum (Pcc), a common cause of soft rot. This QQ activity causes a decrease in production of plant cell wall degrading enzymes of Pcc and attenuates symptoms of soft rot in experimental infection of potato, carrot and cucumber. Our results demonstrate the potential of Lysinibacillus sp. Gs50 as a preventive and curative biocontrol agent. PMID:27911925

Novel Flow Cytometry Analyses of Boar Sperm Viability: Can the Addition of Whole Sperm-Rich Fraction Seminal Plasma to Frozen-Thawed Boar Sperm Affect It?

PubMed

Torres, Mariana Andrade; Díaz, Rommy; Boguen, Rodrigo; Martins, Simone Maria Massami Kitamura; Ravagnani, Gisele Mouro; Leal, Diego Feitosa; Oliveira, Melissa de Lima; Muro, Bruno Bracco Donatelli; Parra, Beatriz Martins; Meirelles, Flávio Vieira; Papa, Frederico Ozanan; Dell'Aqua, José Antônio; Alvarenga, Marco Antônio; Moretti, Aníbal de Sant'Anna; Sepúlveda, Néstor; de Andrade, André Furugen Cesar

2016-01-01

Boar semen cryopreservation remains a challenge due to the extension of cold shock damage. Thus, many alternatives have emerged to improve the quality of frozen-thawed boar sperm. Although the use of seminal plasma arising from boar sperm-rich fraction (SP-SRF) has shown good efficacy; however, the majority of actual sperm evaluation techniques include a single or dual sperm parameter analysis, which overrates the real sperm viability. Within this context, this work was performed to introduce a sperm flow cytometry fourfold stain technique for simultaneous evaluation of plasma and acrosomal membrane integrity and mitochondrial membrane potential. We then used the sperm flow cytometry fourfold stain technique to study the effect of SP-SRF on frozen-thawed boar sperm and further evaluated the effect of this treatment on sperm movement, tyrosine phosphorylation and fertility rate (FR). The sperm fourfold stain technique is accurate (R2 = 0.9356, p > 0.01) for simultaneous evaluation of plasma and acrosomal membrane integrity and mitochondrial membrane potential (IPIAH cells). Centrifugation pre-cryopreservation was not deleterious (p > 0.05) for any analyzed variables. Addition of SP-SRF after cryopreservation was able to improve total and progressive motility (p < 0.05) when boar semen was cryopreserved without SP-SRF; however, it was not able to decrease tyrosine phosphorylation (p > 0.05) or improve IPIAH cells (p > 0.05). FR was not (p > 0.05) statistically increased by the addition of seminal plasma, though females inseminated with frozen-thawed boar semen plus SP-SRF did perform better than those inseminated with sperm lacking seminal plasma. Thus, we conclude that sperm fourfold stain can be used to simultaneously evaluate plasma and acrosomal membrane integrity and mitochondrial membrane potential, and the addition of SP-SRF at thawed boar semen cryopreserved in absence of SP-SRF improve its total and progressive motility.

Novel Flow Cytometry Analyses of Boar Sperm Viability: Can the Addition of Whole Sperm-Rich Fraction Seminal Plasma to Frozen-Thawed Boar Sperm Affect It?

PubMed Central

Díaz, Rommy; Boguen, Rodrigo; Martins, Simone Maria Massami Kitamura; Ravagnani, Gisele Mouro; Leal, Diego Feitosa; Oliveira, Melissa de Lima; Muro, Bruno Bracco Donatelli; Parra, Beatriz Martins; Meirelles, Flávio Vieira; Papa, Frederico Ozanan; Dell’Aqua, José Antônio; Alvarenga, Marco Antônio; Moretti, Aníbal de Sant’Anna; Sepúlveda, Néstor

2016-01-01

Boar semen cryopreservation remains a challenge due to the extension of cold shock damage. Thus, many alternatives have emerged to improve the quality of frozen-thawed boar sperm. Although the use of seminal plasma arising from boar sperm-rich fraction (SP-SRF) has shown good efficacy; however, the majority of actual sperm evaluation techniques include a single or dual sperm parameter analysis, which overrates the real sperm viability. Within this context, this work was performed to introduce a sperm flow cytometry fourfold stain technique for simultaneous evaluation of plasma and acrosomal membrane integrity and mitochondrial membrane potential. We then used the sperm flow cytometry fourfold stain technique to study the effect of SP-SRF on frozen-thawed boar sperm and further evaluated the effect of this treatment on sperm movement, tyrosine phosphorylation and fertility rate (FR). The sperm fourfold stain technique is accurate (R2 = 0.9356, p > 0.01) for simultaneous evaluation of plasma and acrosomal membrane integrity and mitochondrial membrane potential (IPIAH cells). Centrifugation pre-cryopreservation was not deleterious (p > 0.05) for any analyzed variables. Addition of SP-SRF after cryopreservation was able to improve total and progressive motility (p < 0.05) when boar semen was cryopreserved without SP-SRF; however, it was not able to decrease tyrosine phosphorylation (p > 0.05) or improve IPIAH cells (p > 0.05). FR was not (p > 0.05) statistically increased by the addition of seminal plasma, though females inseminated with frozen-thawed boar semen plus SP-SRF did perform better than those inseminated with sperm lacking seminal plasma. Thus, we conclude that sperm fourfold stain can be used to simultaneously evaluate plasma and acrosomal membrane integrity and mitochondrial membrane potential, and the addition of SP-SRF at thawed boar semen cryopreserved in absence of SP-SRF improve its total and progressive motility. PMID:27529819

Molecular Epidemiology of Blastocystis sp. in Various Animal Groups from Two French Zoos and Evaluation of Potential Zoonotic Risk

PubMed Central

Moriniere, Romain; Gantois, Nausicaa; Benamrouz-Vanneste, Sadia; Delgado-Viscogliosi, Pilar; Guyot, Karine; Li, Luen-Luen; Monchy, Sébastien; Noël, Christophe; Poirier, Philippe; Nourrisson, Céline; Wawrzyniak, Ivan; Delbac, Frédéric; Bosc, Stéphanie; Chabé, Magali; Petit, Thierry; Certad, Gabriela; Viscogliosi, Eric

2017-01-01

Blastocystis sp. is a common intestinal parasite infecting humans and a wide range of animals worldwide. It exhibits an extensive genetic diversity and 17 subtypes (STs) have thus far been identified in mammalian and avian hosts. Since several STs are common to humans and animals, it was proposed that a proportion of human infections may result from zoonotic transmission. However, the contribution of each animal source to human infection remains to be clarified. Therefore, the aim of this study was to expand our knowledge of the epidemiology and host specificity of this parasite by performing the largest epidemiological survey ever conducted in animal groups in terms of numbers of species screened. A total of 307 stool samples from 161 mammalian and non-mammalian species in two French zoos were screened by real-time PCR for the presence of Blastocystis sp. Overall, 32.2% of the animal samples and 37.9% of the species tested were shown to be infected with the parasite. A total of 111 animal Blastocystis sp. isolates were subtyped, and 11 of the 17 mammalian and avian STs as well as additional STs previously identified in reptiles and insects were found with a varying prevalence according to animal groups. These data were combined with those obtained from previous surveys to evaluate the potential risk of zoonotic transmission of Blastocystis sp. through the comparison of ST distribution between human and animal hosts. This suggests that non-human primates, artiodactyls and birds may serve as reservoirs for human infection, especially in animal handlers. In contrast, other mammals such as carnivores, and non-mammalian groups including reptiles and insects, do not seem to represent significant sources of Blastocystis sp. infection in humans. In further studies, more intensive sampling and screening of potential new animal hosts will reinforce these statements and expand our understanding of the circulation of Blastocystis sp. in animal and human populations. PMID:28060901

Molecular Epidemiology of Blastocystis sp. in Various Animal Groups from Two French Zoos and Evaluation of Potential Zoonotic Risk.

PubMed

Cian, Amandine; El Safadi, Dima; Osman, Marwan; Moriniere, Romain; Gantois, Nausicaa; Benamrouz-Vanneste, Sadia; Delgado-Viscogliosi, Pilar; Guyot, Karine; Li, Luen-Luen; Monchy, Sébastien; Noël, Christophe; Poirier, Philippe; Nourrisson, Céline; Wawrzyniak, Ivan; Delbac, Frédéric; Bosc, Stéphanie; Chabé, Magali; Petit, Thierry; Certad, Gabriela; Viscogliosi, Eric

2017-01-01

Blastocystis sp. is a common intestinal parasite infecting humans and a wide range of animals worldwide. It exhibits an extensive genetic diversity and 17 subtypes (STs) have thus far been identified in mammalian and avian hosts. Since several STs are common to humans and animals, it was proposed that a proportion of human infections may result from zoonotic transmission. However, the contribution of each animal source to human infection remains to be clarified. Therefore, the aim of this study was to expand our knowledge of the epidemiology and host specificity of this parasite by performing the largest epidemiological survey ever conducted in animal groups in terms of numbers of species screened. A total of 307 stool samples from 161 mammalian and non-mammalian species in two French zoos were screened by real-time PCR for the presence of Blastocystis sp. Overall, 32.2% of the animal samples and 37.9% of the species tested were shown to be infected with the parasite. A total of 111 animal Blastocystis sp. isolates were subtyped, and 11 of the 17 mammalian and avian STs as well as additional STs previously identified in reptiles and insects were found with a varying prevalence according to animal groups. These data were combined with those obtained from previous surveys to evaluate the potential risk of zoonotic transmission of Blastocystis sp. through the comparison of ST distribution between human and animal hosts. This suggests that non-human primates, artiodactyls and birds may serve as reservoirs for human infection, especially in animal handlers. In contrast, other mammals such as carnivores, and non-mammalian groups including reptiles and insects, do not seem to represent significant sources of Blastocystis sp. infection in humans. In further studies, more intensive sampling and screening of potential new animal hosts will reinforce these statements and expand our understanding of the circulation of Blastocystis sp. in animal and human populations.

Investigation of the metabolism of substance P at the blood-brain barrier using LC-MS/MS.

PubMed

Chappa, Arvind K; Cooper, Joshua D; Audus, Kenneth L; Lunte, Susan M

2007-03-12

Substance P (SP) has been associated with pain and depression as well as neurodegenerative diseases. Many of these diverse actions of SP can potentially be attributed to SP metabolites generated at the blood-brain barrier (BBB). In this study, the metabolism of SP was investigated using an in vitro model of the BBB and LC-MS/MS. Substance P metabolism was found to be non-saturable in the concentration range of 100 nM to 10 microM, with approximately 70% of the peptide remaining intact after 5 h. The major metabolites of SP were identified by MS as 3-11 and 5-11. Two previously unreported metabolites, 5-11 and 6-11, were also found in our studies. Several additional minor SP metabolites, including 1-9 and 2-11, were also identified. A profile of the SP metabolites generated by the BBB over time was obtained. The results from the present study provide a better understanding of the role of the blood-brain barrier in the pharmacology of SP.

INVESTIGATION OF THE METABOLISM OF SUBSTANCE P AT THE BLOOD-BRAIN BARRIER USING LC-MS/MS

PubMed Central

Chappa, Arvind K.; Cooper, Joshua D.; Audus, Kenneth L.; Lunte, Susan M.

2007-01-01

Substance P (SP) has been associated with pain and depression as well as neurodegenerative diseases. Many of these diverse actions of SP can potentially be attributed to SP metabolites generated at the blood-brain barrier (BBB). In this study, the metabolism of SP was investigated using an in vitro model of the BBB and LC-MS/MS. Substance P metabolism was found to be non-saturable in the concentration range of 100 nM to 10 μM, with approximately 70% of the peptide remaining intact after 5 h. The major metabolites of SP were identified by MS as 3-11 and 5-11. Two previously unreported metabolites, 5-11 and 6-11, were also found in our studies. Several additional minor SP metabolites, including 1-9 and 2-11, were also identified. A profile of the SP metabolites generated by the BBB over time was obtained. The results from the present study provide us a better understanding of the role of the blood-brain barrier in the pharmacology of SP. PMID:17118606

Diverse algicidal bacteria associated with harmful bloom-forming Karenia mikimotoi in estuarine soil and seawater.

PubMed

Zheng, Ningning; Ding, Ning; Gao, Peike; Han, Meiaoxue; Liu, Xiuxia; Wang, Jianguo; Sun, Li; Fu, Baoyan; Wang, Renjun; Zhou, Jing

2018-08-01

Algicidal bacteria associated with Karenia mikimotoi have been isolated, yet the distribution of the algicidal bacteria has been rarely studied. Here, we postulated and demonstrated that terrestrial environment harbors diverse algicidal bacteria, which can survive in seawater along water flowing into marine and suppress Karenia mikimotoi. In summary, 9 and 5 bacteria with algicidal activity on Karenia mikimotoi were isolated from seawater and estuarine soil, respectively. Similar with the marine bacteria (Alteromonas sp., Halomonas sp., Marinobacter sp., Paracoccus sp., Rhodobacteraceae, Idiomarina sp.), the soil strains (Pseudoalteromonas sp. and Flavobaterium sp.) showed high mortality in Karenia mikimotoi with the inhibitory rate of 87% and 93.5%, respectively, after two days co-cultivation. Algicidal activity of the two strains was detected in the cell-free filtrate not in bacterial cells. The results suggest that algicidal bacteria associated with Karenia mikimotoi widely exist in terrestrial and marine environments, and have application potential on controlling Karenia mikimotoi. Copyright © 2018 Elsevier B.V. All rights reserved.

'Rare biosphere' bacteria as key phenanthrene degraders in coastal seawaters.

PubMed

Sauret, Caroline; Séverin, Tatiana; Vétion, Gilles; Guigue, Catherine; Goutx, Madeleine; Pujo-Pay, Mireille; Conan, Pascal; Fagervold, Sonja K; Ghiglione, Jean-François

2014-11-01

By coupling DNA-SIP and pyrosequencing approaches, we identified Cycloclasticus sp. as a keystone degrader of polycyclic aromatic hydrocarbons (PAH) despite being a member of the 'rare biosphere' in NW Mediterranean seawaters. We discovered novel PAH-degrading bacteria (Oceanibaculum sp., Sneathiella sp.) and we identified other groups already known to possess this function (Alteromonas sp., Paracoccus sp.). Together with Cycloclasticus sp., these groups contributed to potential in situ phenanthrene degradation at a rate >0.5 mg l(-1) day(-1), sufficient to account for a considerable part of PAH degradation. Further, we characterized the PAH-tolerant bacterial communities, which were much more diverse in the polluted site by comparison to unpolluted marine references. PAH-tolerant bacteria were also members of the rare biosphere, such as Glaciecola sp. Collectively, these data show the complex interactions between PAH-degraders and PAH-tolerant bacteria and provide new insights for the understanding of the functional ecology of marine bacteria in polluted waters. Copyright © 2014 Elsevier Ltd. All rights reserved.

[Modeling of lactic acid fermentation of leguminous plant juices].

PubMed

Shurkhno, R A; Validov, Sh Z; Boronin, A M; Naumova, R P

2006-01-01

Lactic acid fermentation of leguminous plant juices was modeled to provide a comparative efficiency assessment of the previously selected strains of lactic acid bacteria as potential components of starter cultures. Juices of the legumes fodder galega, red clover, and alfalfa were subjected to lactic acid fermentation in 27 variants of experiment. Local strains (Lactobacillus sp. RS 2, Lactobacillus sp. RS 3, and Lactobacillus sp. RS 4) and the collection strain Lactobacillus plantarum BS 933 appeared the most efficient (with reference to the rate and degree of acidogenesis, ratio of lactic and acetic acids, and dynamics of microflora) in fermenting fodder galega juice; Lactobacillus sp. RS 1, Lactobacillus sp. RS 2, Lactobacillus sp. RS 3, Lactobacillus sp. RS 4, and L. plantarum BS 933 were the most efficient for red clover juice. Correction of alfalfa juice fermentation using the tested lactic acid bacterial strains appeared inefficient, which is explainable by its increased protein content and a low level of the acids produced during fermentation.

Hypoxic Challenge Testing (Fitness to Fly) in children with complex congenital heart disease.

PubMed

Naqvi, Nitha; Doughty, Victoria L; Starling, Luke; Franklin, Rodney C; Ward, Simon; Daubeney, Piers E F; Balfour-Lynn, Ian M

2018-02-14

Commercial airplanes fly with an equivalent cabin fraction of inspired oxygen of 0.15, leading to reduced oxygen saturation (SpO 2 ) in passengers. How this affects children with complex congenital heart disease (CHD) is unknown. We conducted Hypoxic Challenge Testing (HCT) to assess need for inflight supplemental oxygen. Children aged <16 years had a standard HCT. They were grouped as (A) normal versus abnormal baseline SpO 2 (≥95% vs <95%) and (B) absence versus presence of an actual/potential right-to-left (R-L) shunt. We measured SpO 2 , heart rate, QT interval corrected for heart rate and partial pressure of carbon dioxide measured transcutaneously (PtcCO 2 ). A test failed when children with (1) normal baseline SpO 2 desaturated to 85%, (2) baseline SpO 2 85%-94% desaturated by 15% of baseline; and (3) baseline SpO 2 75%-84% desaturated to 70%. There were 68 children, mean age 3.3 years (range 10 weeks-14.5 years). Children with normal (n=36) baseline SpO 2 desaturated from median 99% to 91%, P<0.0001, and 3/36 (8%) failed the test. Those with abnormal baseline SpO 2 (n=32) desaturated from median 84% to 76%, P<0.0001, and 5/32 (16%) failed (no significant difference between groups). Children with no R-L shunt (n=25) desaturated from median 99% to 93%, P<0.0001, but 0/25 failed. Those with an actual/potential R-L shunt (n=43) desaturated from median 87% to 78%, P<0.0001, and 8/43 (19%) failed (difference between groups P<0.02). PtcCO 2 , heart rate and QT interval corrected for heart rate were unaffected by the hypoxic state. This is the first evidence to help guide which children with CHD need a preflight HCT. We suggest all children with an actual or potential R-L shunt should be tested. © Article author(s) (or their employer(s) unless otherwise stated in the text of the article) 2018. All rights reserved. No commercial use is permitted unless otherwise expressly granted.

Effect of thiorphan on response of the guinea-pig gallbladder to tachykinins.

PubMed

Maggi, C A; Patacchini, R; Renzi, D; Santicioli, P; Regoli, D; Rovero, P; Drapeau, G; Surrenti, C; Meli, A

1989-06-08

Tachykinins produced a concentration-related contraction of the isolated guinea-pig gallbladder, with a rank order of potency neurokinin A (NKA) greater than Arg-neurokinin B = neurokinin B (NKB) greater than substance P (SP). Only the effect of SP was potentiated by thiorphan (0.1-10 microM). A significant enhancement of the response to SP was also produced by captopril (1 microM). [Nle10]NKA-(4-10) and [beta-Ala8]NKA-(4-10), selective NK-2 receptor agonists, were active, whereas [Pro9]SP sulfone (selective NK-1 agonist) was almost ineffective. [MePhe7]NKB (selective NK-3 agonist) had some activity but only at high concentrations. Septide was almost ineffective and DiMeC7 had an action comparable to that of [MePhe7]NKB. None of the effects induced by these synthetic tachykinin analogs were significantly potentiated by thiorphan. Capsaicin (10 microM) produced a contraction which was unaffected by thiorphan. Both capsaicin and NKA-induced contractions were antagonized by Spantide at concentrations (5-10 microM) which had no effect against the atropine-sensitive contractions produced by electrical field stimulation. Capsaicin (1 microM) produced a consistent release of SP-like immunoreactivity (SP-LI) and a second application of the drug had no further effect, indicating complete desensitization. SP-LI release by capsaicin was almost doubled in the presence of thiorphan. These findings indicate that NK-2 and possibly some NK-3 receptors mediate the contractile response of the guinea-pig gallbladder to tachykinins. Both exogenous and endogenous (released by capsaicin) SP were degraded to a significant extent in this organ via a thiorphan-sensitive mechanism, the identity of which remains to be established.

Simultaneous nutrient removal, optimised CO2 mitigation and biofuel feedstock production by Chlorogonium sp. grown in secondary treated non-sterile saline sewage effluent.

PubMed

Lee, Kwan Yin; Ng, Tsz Wai; Li, Guiying; An, Taicheng; Kwan, Ka Ki; Chan, King Ming; Huang, Guocheng; Yip, Ho Yin; Wong, Po Keung

2015-10-30

The phycoremediation process has great potential for effectively addressing environmental pollution. To explore the capabilities of simultaneous algal nutrient removal, CO2 mitigation and biofuel feedstock production from spent water resources, a Chlorogonium sp. isolated from a tilapia pond in Hong Kong was grown in non-sterile saline sewage effluent for a bioremediation study. With high removal efficiencies of NH3-N (88.35±14.39%), NO3(-)-N (85.39±14.96%), TN (93.34±6.47%) and PO4(3-)-P (91.80±17.44%), Chlorogonium sp. achieved a CO2 consumption rate of 58.96 mg L(-1) d(-1), which was optimised by the response surface methodology. Under optimised conditions, the lipid content of the algal biomass reached 24.26±2.67%. Overall, the isolated Chlorogonium sp. showed promising potential in the simultaneous purification of saline sewage effluent in terms of tertiary treatment and CO2 sequestration while delivering feedstock for potential biofuel production in a waste-recycling manner. Copyright © 2015 Elsevier B.V. All rights reserved.

Systematics of the parasitic wasp genus Oxyscelio Kieffer (Hymenoptera, Platygastridae s.l.), Part I: Indo-Malayan and Palearctic fauna

PubMed Central

Burks, Roger A.; Masner, Lubomír; Johnson, Norman F.; Austin, Andrew D.

2013-01-01

Abstract The Indo-Malayan and Palearctic species of Oxyscelio (Hymenoptera: Platygastridae s.l.) are revised. A total of 90 species are recognized as valid, 19 of which are redescribed - Oxyscelio acutiventris (Kieffer), Oxyscelio brevinervis (Kieffer), Oxyscelio carinatus (Kieffer), Oxyscelio ceylonensis (Dodd), Oxyscelio consobrinus (Kieffer), Oxyscelio crassicornis (Kieffer), Oxyscelio cupularis (Kieffer), Oxyscelio dorsalis (Kieffer), Oxyscelio excavatus (Kieffer), Oxyscelio flavipennis (Kieffer), Oxyscelio florus Kononova, Oxyscelio foveatus Kieffer, Oxyscelio kiefferi Dodd, Oxyscelio magnus (Kieffer), Oxyscelio marginalis (Kieffer), Oxyscelio naraws Kozlov & Lê, Oxyscelio perpensus Kononova, Oxyscelio rugosus (Kieffer) and Oxyscelio spinosiceps (Kieffer), and 71 which are described as new - Oxyscelio aclavae Burks, sp. n., Oxyscelio amrichae Burks, sp. n., Oxyscelio anguli Burks, sp. n., Oxyscelio angustifrons Burks, sp. n., Oxyscelio angustinubbin Burks, sp. n., Oxyscelio arcus Burks, sp. n., Oxyscelio arvi Burks, sp. n., Oxyscelio asperi Burks, sp. n., Oxyscelio aureamediocritas Burks, sp. n., Oxyscelio bipunctuum Burks, sp. n., Oxyscelio brevidentis Burks, sp. n., Oxyscelio caesitas Burks, sp. n., Oxyscelio capilli Burks, sp. n., Oxyscelio capitis Burks, sp. n., Oxyscelio cavinetrion Burks, sp. n., Oxyscelio chimaerae Burks, sp. n., Oxyscelio codae Burks, sp. n., Oxyscelio convergens Burks, sp. n., Oxyscelio cordis Burks, sp. n., Oxyscelio crateris Burks, sp. n., Oxyscelio crebritas Burks, sp. n., Oxyscelio crustum Burks, sp. n., Oxyscelio cuculli Burks, sp. n., Oxyscelio cyrtomesos Burks, sp. n., Oxyscelio dasymesos Burks, sp. n., Oxyscelio dasynoton Burks, sp. n., Oxyscelio dermatoglyphes Burks, sp. n., Oxyscelio doumao Burks, sp. n., Oxyscelio fistulae Burks, sp. n., Oxyscelio flabellae Burks, sp. n., Oxyscelio flaviventris Burks, sp. n., Oxyscelio fodiens Burks, sp. n., Oxyscelio fossarum Burks, sp. n., Oxyscelio fossularum Burks, sp. n., Oxyscelio genae Burks, sp. n., Oxyscelio granorum Burks, sp. n., Oxyscelio granuli Burks, sp. n., Oxyscelio greenacus Burks, sp. n., Oxyscelio halmaherae Burks, sp. n., Oxyscelio intermedietas Burks, sp. n., Oxyscelio jaune Burks, sp. n., Oxyscelio jugi Burks, sp. n., Oxyscelio kramatos Burks, sp. n., Oxyscelio labis Burks, sp. n., Oxyscelio lacunae Burks, sp. n., Oxyscelio latinubbin Burks, sp. n., Oxyscelio latitudinis Burks, sp. n., Oxyscelio limae Burks, sp. n., Oxyscelio longiventris Burks, sp. n., Oxyscelio mesiodentis Burks, sp. n., Oxyscelio mollitia Burks, sp. n., Oxyscelio nasolabii Burks, sp. n., Oxyscelio nodorum Burks, sp. n., Oxyscelio noduli Burks, sp. n., Oxyscelio nubbin Burks, sp. n., Oxyscelio obsidiani Burks, sp. n., Oxyscelio ogive Burks, sp. n., Oxyscelio operimenti Burks, sp. n., Oxyscelio peludo Burks, sp. n., Oxyscelio planocarinae Burks, sp. n., Oxyscelio praecipitis Burks, sp. n., Oxyscelio reflectens Burks, sp. n., Oxyscelio regionis Burks, sp. n., Oxyscelio sinuum Burks, sp. n., Oxyscelio spinae Burks, sp. n., Oxyscelio striarum Burks, sp. n., Oxyscelio tecti Burks, sp. n., Oxyscelio unguis Burks, sp. n., Oxyscelio vadorum Burks, sp. n., Oxyscelio vittae Burks, sp. n. and Oxyscelio zeuctomesos. Neotypes are designated for nine species, including the type species O. foveatus Kieffer, Oxyscelio brevinervis (Kieffer), Oxyscelio bifurcatus (Kieffer), Oxyscelio frontalis (Kieffer), Oxyscelio crassicornis (Kieffer), Oxyscelio cupularis (Kieffer), Oxyscelio foveatus Kieffer, Oxyscelio kiefferi Dodd, Oxyscelio magnus (Kieffer) and Oxyscelio marginalis (Kieffer). Oxyscelio bifurcatus (Kieffer) syn. n. and Oxyscelio frontalis (Kieffer) syn. n. are synonymized under Oxyscelio consobrinus (Kieffer). The fauna is divided into 13 species groups, with six species unplaced to a group. A phylogenetic analysis employing 73 morphological characters did not find most of these groups to be monophyletic, but they are retained to aid in specimen identification. Potential biogeographical patterns are discussed, including regional variation in surface sculpture and a morphological link between Sri Lankan and Australian species. PMID:23794863

Regulation of voltage-gated potassium channels attenuates resistance of side-population cells to gefitinib in the human lung cancer cell line NCI-H460.

PubMed

Choi, Seon Young; Kim, Hang-Rae; Ryu, Pan Dong; Lee, So Yeong

2017-02-21

Side-population (SP) cells that exclude anti-cancer drugs have been found in various tumor cell lines. Moreover, SP cells have a higher proliferative potential and drug resistance than main population cells (Non-SP cells). Also, several ion channels are responsible for the drug resistance and proliferation of SP cells in cancer. To confirm the expression and function of voltage-gated potassium (Kv) channels of SP cells, these cells, as well as highly expressed ATP-binding cassette (ABC) transporters and stemness genes, were isolated from a gefitinib-resistant human lung adenocarcinoma cell line (NCI-H460), using Hoechst 33342 efflux. In the present study, we found that mRNA expression of Kv channels in SP cells was different compared to Non-SP cells, and the resistance of SP cells to gefitinib was weakened with a combination treatment of gefitinib and Kv channel blockers or a Kv7 opener, compared to single-treatment gefitinib, through inhibition of the Ras-Raf signaling pathway. The findings indicate that Kv channels in SP cells could be new targets for reducing the resistance to gefitinib.

Fuel-cell engine stream conditioning system

DOEpatents

DuBose, Ronald Arthur

2002-01-01

A stream conditioning system for a fuel cell gas management system or fuel cell engine. The stream conditioning system manages species potential in at least one fuel cell reactant stream. A species transfer device is located in the path of at least one reactant stream of a fuel cell's inlet or outlet, which transfer device conditions that stream to improve the efficiency of the fuel cell. The species transfer device incorporates an exchange media and a sorbent. The fuel cell gas management system can include a cathode loop with the stream conditioning system transferring latent and sensible heat from an exhaust stream to the cathode inlet stream of the fuel cell; an anode humidity retention system for maintaining the total enthalpy of the anode stream exiting the fuel cell related to the total enthalpy of the anode inlet stream; and a cooling water management system having segregated deionized water and cooling water loops interconnected by means of a brazed plate heat exchanger.

Biodiesel production from algae grown on food industry wastewater.

PubMed

Mureed, Khadija; Kanwal, Shamsa; Hussain, Azhar; Noureen, Shamaila; Hussain, Sabir; Ahmad, Shakeel; Ahmad, Maqshoof; Waqas, Rashid

2018-04-10

Algae have an ample potential to produce biodiesel from spent wash of food industry. In addition, it is cheaper and presents an environment friendly way to handle food industry wastewater. This study was conducted to optimize the growth of microalgal strains and to assess biodiesel production potential of algae using untreated food industry wastewater as a source of nutrients. The food industry wastewater was collected and analyzed for its physicochemical characteristics. Different dilutions (10, 20, 40, 80, and 100%) of this wastewater were made with distilled water, and growth of two microalgal strains (Cladophora sp. and Spyrogyra sp.) was recorded. Each type of wastewater was inoculated with microalgae, and biomass was harvested after 7 days. The growth of both strains was also evaluated at varying temperatures, pH and light periods to optimize the algal growth for enhanced biodiesel production. After optimization, biodiesel production by Spyrogyra sp. was recorded in real food industry wastewater. The algal biomass increased with increasing level of food industry wastewater and was at maximum with 100% wastewater. Moreover, statistically similar results were found with algal growth on 100% wastewater and also on Bristol's media. The Cladophora sp. produced higher biomass than Spyrogyra sp. while growing on food industry wastewater. The optimal growth of both microalgal strains was observed at temperature 30 °C, pH: 8, light 24 h. Cladophora sp. was further evaluated for biodiesel production while growing on 100% wastewater and found that this strain produced high level of oil and biodiesel. Algae have an ample potential to produce biodiesel from spent wash of food industry. In addition, it is cheaper and presents an environment friendly way to handle food industry wastewater.

Isolation, characterization and exploring biotechnological potential of halophilic archaea from salterns of western India.

PubMed

Singh, Aparna; Singh, Anil Kumar

2018-01-01

Thirteen halophilic archaea were isolated from Kandla and Bhayander salt pans. These isolates were grouped into three different genera Halobacterium, Haloferax and Haloarcula based on morphological and biochemical characterization, polar lipid analysis, Amplified 16S rDNA restriction analysis (ARDRA) and 16S rDNA sequence analysis. Biochemical characterization suggested the ability of isolates to produce protease, amylase and poly-hydroxybutyrate (PHB) indicating their biotechnological potential. The isolates were further screened for the amount of extracellular protease produced. Halobacterium sp. SP1(1) showed significant protease production compared to other isolates. Protease producing ability of the isolate was influenced by several factors such as NaCl concentration, type of protein source, metal ions and surfactants, and presence of amino acid supplements in the production medium. Soybean flour, FeCl 3 and dicotylsulfosuccinate were found to increase protease production by 2.36, 1.54 and 1.26 folds, respectively compared to production in basal medium. Effect of organic solvents used in paints (n-decane, n-undecane and n-dodecane) was also investigated on protease production by the isolate. Protease production by Halobacterium sp. SP1(1) was enhanced by 1.2 folds in presence of n-decane compared to control. Furthermore, the ability of isolate to hydrolyse fish protein was investigated using three different edible fishes (Pomfret, Flat fish and Seer fish) as sole protein source. Pomfret was found to be a good protein source for protease production by the isolate. These results revealed that Halobacterium sp. SP1(1) may have potential for paint-based antifouling coating preparations and fish sauce preparation by virtue of its extracellular protease.

Logging-related increases in stream density in a northern California watershed

Treesearch

Matthew S. Buffleben

2012-01-01

Although many sediment budgets estimate the effects of logging, few have considered the potential impact of timber harvesting on stream density. Failure to consider changes in stream density could lead to large errors in the sediment budget, particularly between the allocation of natural and anthropogenic sources of sediment.This study...

Stable Isotope Analysis of stream organisms -- a potential tool for monitoring changes in catchment conditions and effects on stream ecosystems

EPA Science Inventory

Stable isotope analyses of stream organisms are performed usually as discrete site experiments (e.g., to study the effect of a direct manipulation), synoptically (e.g. to illustrate effects of longitudinal variation of influencing factors), or, less frequently, over the course of...

Biphasic effects of substance P on respiratory activity and respiration-related neurones in ventrolateral medulla in the neonatal rat brainstem in vitro.

PubMed

Shvarev, Y N; Lagercrantz, H; Yamamoto, Y

2002-01-01

The effects of substance P (SP) on respiratory activity in the brainstem-spinal cord preparation from neonatal rats (0-4 days old) were investigated. The respiratory activity was recorded from C4 ventral roots and intracellularly from three types of respiration-related neurones, i.e. pre-inspiratory (or biphasic E), three subtypes of inspiratory; expiratory and tonic neurones in the ventrolateral medulla (VLM). After the onset of SP bath application (10 nM-1 microM) a dose-dependent decline of burst rate (by 48%) occurred, followed by a weaker dose-dependent increase (by 17.5%) in burst rate. The biphasic effect of SP on inspiratory burst rate was associated with sustained membrane depolarization (in a range of 0.5-13 mV) of respiration-related and tonic neurones. There were no significant changes in membrane resistance in any type of neurones when SP was applied alone or when synaptic transmission was blocked with tetrodotoxin (TTX). The initial depolarization was associated with an increase in inspiratory drive potential (by 25%) as well as in bursting time (by 65%) and membrane excitability in inspiratory and pre-inspiratory neurones, which corresponded to the decrease in burst rate (C4 activity). The spiking frequency of expiratory and tonic neurones was also increased (by 36 and 48%). This activation was followed by restoration of the synaptic drive potential and bursting time in inspiratory and to a less extent in pre-inspiratory neurones, which corresponded to the increase in burst rate. The discharge frequency of expiratory and tonic neurones also decreased to control values. This phase followed the peak membrane depolarization. At the peak depolarization, SP reduced the amplitude of the action potential by 4-8% in all types of neurones. Our results suggest that SP exerts a general excitatory effect on respiration-related neurones and synaptic coupling within the respiratory network in the VLM. The transient changes in neuronal activity in the VLM may underlie the biphasic effect of SP in the brainstem respiration activity recorded in C4 roots. However, the biphasic effect of SP on inspiratory burst rate seems to be also defined by the balance in activity of other SP-sensitive systems and neurones in the respiratory network in the brainstem and spinal cord, which can modify the activity of medullary respiratory rhythm generator.

Altitudinal patterns of diversity and functional traits of metabolically active microorganisms in stream biofilms

PubMed Central

Wilhelm, Linda; Besemer, Katharina; Fragner, Lena; Peter, Hannes; Weckwerth, Wolfram; Battin, Tom J

2015-01-01

Resources structure ecological communities and potentially link biodiversity to energy flow. It is commonly believed that functional traits (generalists versus specialists) involved in the exploitation of resources depend on resource availability and environmental fluctuations. The longitudinal nature of stream ecosystems provides changing resources to stream biota with yet unknown effects on microbial functional traits and community structure. We investigated the impact of autochthonous (algal extract) and allochthonous (spruce extract) resources, as they change along alpine streams from above to below the treeline, on microbial diversity, community composition and functions of benthic biofilms. Combining bromodeoxyuridine labelling and 454 pyrosequencing, we showed that diversity was lower upstream than downstream of the treeline and that community composition changed along the altitudinal gradient. We also found that, especially for allochthonous resources, specialisation by biofilm bacteria increased along that same gradient. Our results suggest that in streams below the treeline biofilm diversity, specialisation and functioning are associated with increasing niche differentiation as potentially modulated by divers allochthonous and autochthonous constituents contributing to resources. These findings expand our current understanding on biofilm structure and function in alpine streams. PMID:25978543

Phosphoramidon potentiates mammalian tachykinin-induced biting, licking and scratching behaviour in mice.

PubMed

Sakurada, T; Tan-No, K; Yamada, T; Sakurada, S; Kisara, K

1990-12-01

The effects of peptidase inhibitors were examined upon behavioural responses including scratch, bite and lick produced by intrathecal (IT) injection of substance P (SP) and neurokinin A (NK A) in mice. Phosphoramidon (0.002-2.0 nmol), an endopeptidase-24.11 inhibitor, simultaneously injected with SP or NK A, remarkably enhanced and prolonged SP- or NK A-induced behavioural response in a dose-dependent manner. The behavioural response to SP was significantly increased by 2.0 nmol of bestatin, an aminopeptidase inhibitor, but not by 1.0 nmol. Captopril, an angiotensin-converting enzyme inhibitor, was without effect on both tachykinin-induced responses. When phosphoramidon was injected together with bestatin and captopril which have no significant effect alone, SP- or NK A-induced behavioral response was significantly increased. These data suggest that endopeptidase-24.11 may be an important enzyme responsible for terminating of SP- or NK A-induced behavioral response at the spinal cord level.

Tachykinin antagonists have potent local anaesthetic actions.

PubMed

Post, C; Butterworth, J F; Strichartz, G R; Karlsson, J A; Persson, C G

1985-11-19

Contrary to what would have been expected, an antagonist of substance P (SP) [Arg5,D-Trp7,9]SP-(5-11) inhibited the neurogenic contraction of isolated guinea-pig hilus bronchi more readily than a contraction produced by exogenous SP. Furthermore, it has previously been shown that a tachykinin antagonist given intrathecally produced motor blockade as do local anaesthetic drugs. We therefore examined whether tachykinin antagonists had a depressant action on axonal neurotransmission. The compound action potential (APc) of the frog isolated sciatic nerve was suppressed in a concentration-dependent manner by the tachykinin antagonists [D-Pro2,D-Trp7,9]SP and [Arg5,D-Trp7,9]Sp-(5-11), both being about 4 times more potent than lidocaine. SP itself was without effect. Similarly in the rat isolated sciatic nerve [D-Pro2,D-Trp7,9]SP suppressed the APc. It was more potent in the A alpha- than in the C-fibres. SP did not affect conduction in either fibre type. In conscious guinea-pigs [D-Pro2,D-Trp7,9]SP injected adjacent to the sciatic nerve was found to block motor but not sensory functions of the limb. Thus, commonly used tachykinin antagonists, but not SP itself, have potent local anaesthetic properties. This should be considered when these agents are employed as pharmacological tools.

Trophic Interactions Between Insects and Stream-Associated Amphibians in Steep, Cobble-Bottom Streams of the Pacific Coast of North America

PubMed Central

Atwood, Trisha; Richardson, John S.

2012-01-01

Two native, stream-associated amphibians are found in coastal streams of the west coast of North America, the tailed frog and the coastal giant salamander, and each interacts with stream insects in contrasting ways. For tailed frogs, their tadpoles are the primary life stage found in steep streams and they consume biofilm from rock surfaces, which can have trophic and non-trophic effects on stream insects. By virtue of their size the tadpoles are relatively insensitive to stream insect larvae, and tadpoles are capable of depleting biofilm levels directly (exploitative competition), and may also “bulldoze” insect larvae from the surfaces of stones (interference competition). Coastal giant salamander larvae, and sometimes adults, are found in small streams where they prey primarily on stream insects, as well as other small prey. This predator-prey interaction with stream insects does not appear to result in differences in the stream invertebrate community between streams with and without salamander larvae. These two examples illustrate the potential for trophic and non-trophic interactions between stream-associated amphibians and stream insects, and also highlights the need for further research in these systems. PMID:26466536

Microalgal biomass production and on-site bioremediation of carbon dioxide, nitrogen oxide and sulfur dioxide from flue gas using Chlorella sp. cultures.

PubMed

Chiu, Sheng-Yi; Kao, Chien-Ya; Huang, Tzu-Ting; Lin, Chia-Jung; Ong, Seow-Chin; Chen, Chun-Da; Chang, Jo-Shu; Lin, Chih-Sheng

2011-10-01

The growth and on-site bioremediation potential of an isolated thermal- and CO₂-tolerant mutant strain, Chlorella sp. MTF-7, were investigated. The Chlorella sp. MTF-7 cultures were directly aerated with the flue gas generated from coke oven of a steel plant. The biomass concentration, growth rate and lipid content of Chlorella sp. MTF-7 cultured in an outdoor 50-L photobioreactor for 6 days was 2.87 g L⁻¹ (with an initial culture biomass concentration of 0.75 g L⁻¹), 0.52 g L⁻¹ d⁻¹ and 25.2%, respectively. By the operation with intermittent flue gas aeration in a double-set photobioreactor system, average efficiency of CO₂ removal from the flue gas could reach to 60%, and NO and SO₂ removal efficiency was maintained at approximately 70% and 50%, respectively. Our results demonstrate that flue gas from coke oven could be directly introduced into Chlorella sp. MTF-7 cultures to potentially produce algal biomass and efficiently capture CO₂, NO and SO₂ from flue gas. Copyright © 2011 Elsevier Ltd. All rights reserved.

Draft genome sequence of Streptomyces sp. strain F1, a potential source for glycoside hydrolases isolated from Brazilian soil.

PubMed

Melo, Ricardo Rodrigues de; Persinoti, Gabriela Felix; Paixão, Douglas Antonio Alvaredo; Squina, Fábio Márcio; Ruller, Roberto; Sato, Helia Harumi

Here, we show the draft genome sequence of Streptomyces sp. F1, a strain isolated from soil with great potential for secretion of hydrolytic enzymes used to deconstruct cellulosic biomass. The draft genome assembly of Streptomyces sp. strain F1 has 69 contigs with a total genome size of 8,142,296bp and G+C 72.65%. Preliminary genome analysis identified 175 proteins as Carbohydrate-Active Enzymes, being 85 glycoside hydrolases organized in 33 distinct families. This draft genome information provides new insights on the key genes encoding hydrolytic enzymes involved in biomass deconstruction employed by soil bacteria. Copyright © 2017 Sociedade Brasileira de Microbiologia. Published by Elsevier Editora Ltda. All rights reserved.

Gas stream purifier

NASA Technical Reports Server (NTRS)

Adam, Steven J.

1994-01-01

A gas stream purifier has been developed that is capable of removing corrosive acid, base, solvent, organic, inorganic, and water vapors as well as particulates from an inert mixed gas stream using only solid scrubbing agents. This small, lightweight purifier has demonstrated the ability to remove contaminants from an inert gas stream with a greater than 99 percent removal efficiency. The Gas Stream Purifier has outstanding market and sales potential in manufacturing, laboratory and science industries, medical, automotive, or any commercial industry where pollution, contamination, or gas stream purification is a concern. The purifier was developed under NASA contract NAS9-18200 Schedule A for use in the international Space Station. A patent application for the Gas Stream Purifier is currently on file with the United States Patent and Trademark Office.

Impact of Tidal-Stream Turbines on the Generation of the Higher Tidal Harmonics

NASA Astrophysics Data System (ADS)

Potter, Daniel; Ilic, Suzana; Folkard, Andrew

2016-04-01

The higher tidal harmonics result from the interaction of the astronomic tides with both themselves and each other through non-linear processes. In shallower waters such as those near the coast these non-linear processes become more significant and thus, so too do the higher tidal harmonics become more significant. The interaction of the tide with tidal-stream turbines (TSTs), through thrust and drag processes will be non-linear and as such will contribute to the generation of higher tidal harmonics, thus changing the nature of the tide downstream of the turbines. The change to the tide may potentially impact on the downstream energy resource (Robins et al. 2015) and sediment transport processes (Pingree & Griffiths 1979). This paper will present analytical results, which suggest that TSTs will impact on the generation of all higher harmonics but with odd overtides being impacted more than even overtides, the most important examples of which are the M6 and M4 tides respectively, which are the first odd and even overtides of the M2 tide. Change in phase and amplitude of the M6 tide by TSTs will distort the tide but will not cause an asymmetry between the flood and ebb of the tide. Change in the phase and amplitude of the M4 can not only distort the tide but also cause asymmetry. Hence any change to the M4 tide by the turbines is more significant, despite the magnitude of change to the M6 being greater. In order to gain a fuller understanding of the way in which TSTs change the tide downstream and the significance of any change for transport processes or energy resource, a numerical modelling study will be carried out, which will be presented in a future paper. Robins, P.E., Neill, S.P., Lewis, M. & Ward, S.L., 2015. Characterising the spatial and temporal variability of the tidal-stream energy resource over the northwest European shelf seas. Applied Energy, 147: 510-522. Pingree, R.D. & Griffiths, D.K., 1979. Sand transport paths around the British Isles resulting from M2 and M4 tidal interactions. J. Mar. Biol. Ass. U.K., 59: 497-513

Dissemination of antibiotic resistance genes and human pathogenic bacteria from a pig feedlot to the surrounding stream and agricultural soils.

PubMed

Fang, Hua; Han, Lingxi; Zhang, Houpu; Long, Zhengnan; Cai, Lin; Yu, Yunlong

2018-05-29

The dissemination of antibiotic resistance genes (ARGs), human pathogenic bacteria (HPB), and antibiotic-resistant HPB (ARHPB) from animal feedlot to nearby environment poses a potentially high risk to environmental ecology and public health. Here, a metagenomic analysis was employed to explore the dissemination of ARGs, HPB, and ARHPB from a pig feedlot to surrounding stream and agricultural soils. In total, not detectable (ND)-1,628.4 μg/kg of antibiotic residues, 18 types of ARGs, 48 HPB species, and 216 ARB isolates were detected in all samples. Antibiotic residues from pig feedlot mainly migrated into stream sediments and greenhouse soil. The dominant ARGs and HPB species from pig feedlot spread into stream sediments (tetracycline resistance genes, Clostridium difficile, and Mycobacterium tuberculosis), stream water (multidrug resistance (MDR) genes, Shigella flexneri, and Bordetella pertussis), and greenhouse soil (MDR genes, Bacillus anthracis, and Brucella melitensis). It is concerning that 54.4% of 216 ARB isolates from all samples were potential ARHPB species, and genome sequencing and functional annotation of 4 MDR HPB isolates showed 9 ARG types. Our findings revealed the potential migration and dissemination of antibiotic residues, ARGs, HPB, and ARHPB from pig feedlot to surrounding stream and agricultural soils via pig sewage discharge and manure fertilization. Copyright © 2018 Elsevier B.V. All rights reserved.

Complete Genome Sequence of the Diesel-Degrading Acinetobacter sp. Strain DR1 ▿

PubMed Central

Jung, Jaejoon; Baek, Jeong-Hun; Park, Woojun

2010-01-01

The genus Acinetobacter is ubiquitous in soil, aquatic, and sediment environments and includes pathogenic strains, such as A. baumannii. Many Acinetobacter species isolated from various environments have biotechnological potential since they are capable of degrading a variety of pollutants. Acinetobacter sp. strain DR1 has been identified as a diesel degrader. Here we report the complete genome sequence of Acinetobacter sp. DR1 isolated from the soil of a rice paddy. PMID:20639327

Potential for real-time understanding of coupled hydrologic and biogeochemical processes in stream ecosystems: Future integration of telemetered data with process models for glacial meltwater streams

NASA Astrophysics Data System (ADS)

McKnight, Diane M.; Cozzetto, Karen; Cullis, James D. S.; Gooseff, Michael N.; Jaros, Christopher; Koch, Joshua C.; Lyons, W. Berry; Neupauer, Roseanna; Wlostowski, Adam

2015-08-01

While continuous monitoring of streamflow and temperature has been common for some time, there is great potential to expand continuous monitoring to include water quality parameters such as nutrients, turbidity, oxygen, and dissolved organic material. In many systems, distinguishing between watershed and stream ecosystem controls can be challenging. The usefulness of such monitoring can be enhanced by the application of quantitative models to interpret observed patterns in real time. Examples are discussed primarily from the glacial meltwater streams of the McMurdo Dry Valleys, Antarctica. Although the Dry Valley landscape is barren of plants, many streams harbor thriving cyanobacterial mats. Whereas a daily cycle of streamflow is controlled by the surface energy balance on the glaciers and the temporal pattern of solar exposure, the daily signal for biogeochemical processes controlling water quality is generated along the stream. These features result in an excellent outdoor laboratory for investigating fundamental ecosystem process and the development and validation of process-based models. As part of the McMurdo Dry Valleys Long-Term Ecological Research project, we have conducted field experiments and developed coupled biogeochemical transport models for the role of hyporheic exchange in controlling weathering reactions, microbial nitrogen cycling, and stream temperature regulation. We have adapted modeling approaches from sediment transport to understand mobilization of stream biomass with increasing flows. These models help to elucidate the role of in-stream processes in systems where watershed processes also contribute to observed patterns, and may serve as a test case for applying real-time stream ecosystem models.

Sp100 isoform-specific regulation of human adenovirus 5 gene expression.

PubMed

Berscheminski, Julia; Wimmer, Peter; Brun, Juliane; Ip, Wing Hang; Groitl, Peter; Horlacher, Tim; Jaffray, Ellis; Hay, Ron T; Dobner, Thomas; Schreiner, Sabrina

2014-06-01

Promyelocytic leukemia nuclear bodies (PML-NBs) are nuclear structures that accumulate intrinsic host factors to restrict viral infections. To ensure viral replication, these must be limited by expression of viral early regulatory proteins that functionally inhibit PML-NB-associated antiviral effects. To benefit from the activating capabilities of Sp100A and simultaneously limit repression by Sp100B, -C, and -HMG, adenoviruses (Ads) employ several features to selectively and individually target these isoforms. Ads induce relocalization of Sp100B, -C, and -HMG from PML-NBs prior to association with viral replication centers. In contrast, Sp100A is kept at the PML tracks that surround the newly formed viral replication centers as designated sites of active transcription. We concluded that the host restriction factors Sp100B, -C, and -HMG are potentially inactivated by active displacement from these sites, whereas Sp100A is retained to amplify Ad gene expression. Ad-dependent loss of Sp100 SUMOylation is another crucial part of the virus repertoire to counteract intrinsic immunity by circumventing Sp100 association with HP1, therefore limiting chromatin condensation. We provide evidence that Ad selectively counteracts antiviral responses and, at the same time, benefits from PML-NB-associated components which support viral gene expression by actively recruiting them to PML track-like structures. Our findings provide insights into novel strategies for manipulating transcriptional regulation to either inactivate or amplify viral gene expression. We describe an adenoviral evasion strategy that involves isoform-specific and active manipulation of the PML-associated restriction factor Sp100. Recently, we reported that the adenoviral transactivator E1A targets PML-II to efficiently activate viral transcription. In contrast, the PML-associated proteins Daxx and ATRX are inhibited by early viral factors. We show that this concept is more intricate and significant than originally believed, since adenoviruses apparently take advantage of specific PML-NB-associated proteins and simultaneously inhibit antiviral measures to maintain the viral infectious program. Specifically, we observed Ad-induced relocalization of the Sp100 isoforms B, C, and HMG from PML-NBs juxtaposed with viral replication centers. In contrast, Sp100A is retained at Ad-induced PML tracks that surround the newly formed viral replication centers, acting as designated sites of active transcription. The host restriction factors Sp100B, -C, and -HMG are potentially inactivated by active displacement from these sites, whereas Sp100A is retained to amplify Ad gene expression.

Waveform difference between skin conductance and skin potential responses in relation to electrical and evaporative properties of skin.

PubMed

Tronstad, Christian; Kalvøy, Håvard; Grimnes, Sverre; Martinsen, Ørjan G

2013-11-01

The shapes of skin conductance (SC) and skin potential (SP) responses are often similar, but can also be very different due to an unexplained cause. Using a new method to measure SC and SP simultaneously at the same electrode, this difference was investigated in a new way by comparing their temporal peak differences. SC, SP, skin susceptance (SS), and transepidermal water loss (TEWL) were recorded from 40 participants during relaxation and stress. The SP response could peak anywhere between the onset of an SC response to some time after the peak of an SC response. This peak time difference was associated with the magnitude of the SCR, the hydration of the skin, and the filling of the sweat ducts. Interpretation of the results in light of existing biophysical theories suggests that this peak difference may indicate the hydraulic capacity state of the sweat ducts at the time of a response. Copyright © 2013 Society for Psychophysiological Research.

Dissolution of Arsenic Minerals Mediated by Dissimilatory Arsenate Reducing Bacteria: Estimation of the Physiological Potential for Arsenic Mobilization

PubMed Central

Lukasz, Drewniak; Liwia, Rajpert; Aleksandra, Mantur; Aleksandra, Sklodowska

2014-01-01

The aim of this study was characterization of the isolated dissimilatory arsenate reducing bacteria in the context of their potential for arsenic removal from primary arsenic minerals through reductive dissolution. Four strains, Shewanella sp. OM1, Pseudomonas sp. OM2, Aeromonas sp. OM4, and Serratia sp. OM17, capable of anaerobic growth with As (V) reduction, were isolated from microbial mats from an ancient gold mine. All of the isolated strains: (i) produced siderophores that promote dissolution of minerals, (ii) were resistant to dissolved arsenic compounds, (iii) were able to use the dissolved arsenates as the terminal electron acceptor, and (iii) were able to use copper minerals containing arsenic minerals (e.g., enargite) as a respiratory substrate. Based on the results obtained in this study, we postulate that arsenic can be released from some As-bearing polymetallic minerals (such as copper ore concentrates or middlings) under reductive conditions by dissimilatory arsenate reducers in indirect processes. PMID:24724102

Curcumin decreases the expression of Pokemon by suppressing the binding activity of the Sp1 protein in human lung cancer cells.

PubMed

Cui, Jiajun; Meng, Xianfeng; Gao, Xudong; Tan, Guangxuan

2010-03-01

Pokemon, which stands for POK erythroid myeloid ontogenic factor, can regulate expression of many genes and plays an important role in tumorigenesis. Curcumin, a natural and non-toxic yellow compound, has capacity for antioxidant, free radical scavenger, anti-inflammatory properties. Recent studies shows it is a potential inhibitor of cell proliferation in a variety of tumour cells. To investigate whether curcumin can regulate the expression of Pokemon, a series of experiments were carried out. Transient transfection experiments demonstrated that curcumin could decrease the activity of the Pokemon promoter. Western blot analysis suggested that curcumin could significantly decrease the expression of the Pokemon. Overexpression of Sp1 could enhance the activity of the Pokemon promoter, whereas knockdown of Sp1 could decrease its activity. More important, we also found that curcumin could decrease the expression of the Pokemon by suppressing the stimulation of the Sp1 protein. Therefore, curcumin is a potential reagent for tumour therapy which may target Pokemon.

Metabolic profiles of prokaryotic and eukaryotic communities in deep-sea sponge Lamellomorpha sp. indicated by metagenomics

NASA Astrophysics Data System (ADS)

Li, Zhi-Yong; Wang, Yue-Zhu; He, Li-Ming; Zheng, Hua-Jun

2014-01-01

The whole metabolism of a sponge holobiont and the respective contributions of prokaryotic and eukaryotic symbionts and their associations with the sponge host remain largely unclear. Meanwhile, compared with shallow water sponges, deep-sea sponges are rarely understood. Here we report the metagenomic exploration of deep-sea sponge Lamellomorpha sp. at the whole community level. Metagenomic data showed phylogenetically diverse prokaryotes and eukaryotes in Lamellomorpha sp.. MEGAN and gene enrichment analyses indicated different metabolic potentials of prokaryotic symbionts from eukaryotic symbionts, especially in nitrogen and carbon metabolisms, and their molecular interactions with the sponge host. These results supported the hypothesis that prokaryotic and eukaryotic symbionts have different ecological roles and relationships with sponge host. Moreover, vigorous denitrification, and CO2 fixation by chemoautotrophic prokaryotes were suggested for this deep-sea sponge. The study provided novel insights into the respective potentials of prokaryotic and eukaryotic symbionts and their associations with deep-sea sponge Lamellomorpha sp..

Dissolution of arsenic minerals mediated by dissimilatory arsenate reducing bacteria: estimation of the physiological potential for arsenic mobilization.

PubMed

Lukasz, Drewniak; Liwia, Rajpert; Aleksandra, Mantur; Aleksandra, Sklodowska

2014-01-01

The aim of this study was characterization of the isolated dissimilatory arsenate reducing bacteria in the context of their potential for arsenic removal from primary arsenic minerals through reductive dissolution. Four strains, Shewanella sp. OM1, Pseudomonas sp. OM2, Aeromonas sp. OM4, and Serratia sp. OM17, capable of anaerobic growth with As (V) reduction, were isolated from microbial mats from an ancient gold mine. All of the isolated strains: (i) produced siderophores that promote dissolution of minerals, (ii) were resistant to dissolved arsenic compounds, (iii) were able to use the dissolved arsenates as the terminal electron acceptor, and (iii) were able to use copper minerals containing arsenic minerals (e.g., enargite) as a respiratory substrate. Based on the results obtained in this study, we postulate that arsenic can be released from some As-bearing polymetallic minerals (such as copper ore concentrates or middlings) under reductive conditions by dissimilatory arsenate reducers in indirect processes.

Antioxidant and anticholinesterase investigations of Rumex hastatus D. Don: potential effectiveness in oxidative stress and neurological disorders.

PubMed

Ahmad, Sajjad; Ullah, Farhat; Ayaz, Muhammad; Sadiq, Abdul; Imran, Muhammad

2015-03-26

Rumex species are traditionally used for the treatment of neurological disorders including headache, migraine, depression, paralysis etc. Several species have been scientifically validated for antioxidant and anticholinestrase potentials. This study aims to investigate Rumex hastatus D. Don crude methanolic extract, subsequent fractions, saponins and flavonoids for acetylcholinestrase, butyrylcholinestrase inhibition and diverse antioxidant activities to validate its folkloric uses in neurological disorders. Rumex hastatus crude methanolic extract (Rh. Cr), subsequent fractions; n-hexane (Rh. Hex), chloroform (Rh. Chf), ethyl acetate (Rh. EtAc), aqueous fraction (Rh. Aq), crude saponins (Rh. Sp) and flavonoids (Rh. Fl) were investigated against acetylcholinesterase (AChE) and butyrylcholinesterase (BChE) at various concentrations (125, 250, 500, 1000 μg/mL) using Ellman's spectrophotometric analysis. Antioxidant potentials of Rh. Sp and Rh. Fl were evaluated using DPPH, H2O2 and ABTS free radical scavenging assays at 62.5, 125, 250, 500, 1000 μg/mL. All the test samples showed concentration dependent cholinesterase inhibition and radicals scavenging activity. The AChE inhibition potential of Rh. Sp and Rh. Fl were most prominent i.e., 81.67 ± 0.88 and 91.62 ± 1.67 at highest concentration with IC50 135 and 20 μg/mL respectively. All the subsequent fractions exhibited moderate to high AChE inhibition i.e., Rh. Cr, Rh. Hex, Rh. Chf, Rh. EtAc and Rh. Aq showed IC50 218, 1420, 75, 115 and 1210 μg/mL respectively. Similarly, against BChE various plant extracts i.e., Rh. Sp, Rh. Fl, Rh. Cr, Rh. Hex, Rh. Chf, Rh. EtAc and Rh. Aq resulted IC50 165, 175, 265, 890, 92, 115 and 220 μg/mL respectively. In DPPH free radical scavenging assay, Rh. Sp and Rh. Fl showed comparable results with the positive control i.e., 63.34 ± 0.98 and 76.93 ± 1.13% scavenging at 1 mg/mL concentration (IC50 312 and 104 μg/mL) respectively. The percent ABTS radical scavenging potential exhibited by Rh. Sp and Rh. Fl (1000 μg/mL) were 82.58 ± 0.52 and 88.25 ± 0.67 with IC50 18 and 9 μg/mL respectively. Similarly in H2O2 scavenging assay, the Rh. Sp and Rh. Fl exhibited IC50 175 and 275 μg/mL respectively. The strong anticholinesterase and antioxidant activities of Rh. Sp, Rh. Fl and various fractions of R. hastatus support the purported ethnomedicinal uses and recommend R. hastatus as a possible remedy for the treatment of AD and neurodegenerative disorders.

Up-regulation of lymphocyte antigen 6 complex expression in side-population cells derived from a human trophoblast cell line HTR-8/SVneo.

PubMed

Inagaki, Tetsunori; Kusunoki, Soshi; Tabu, Kouichi; Okabe, Hitomi; Yamada, Izumi; Taga, Tetsuya; Matsumoto, Akemi; Makino, Shintaro; Takeda, Satoru; Kato, Kiyoko

2016-01-01

The continual proliferation and differentiation of trophoblasts are critical for the maintenance of pregnancy. It is well known that the tissue stem cells are associated with the development of tissues and pathologies. It has been demonstrated that side-population (SP) cells identified by fluorescence-activated cell sorting (FACS) are enriched with stem cells. The SP cells in HTR-8/SVneo cells derived from human primary trophoblast cells were isolated by FACS. HTR-8/SVneo-SP cell cultures generated both SP and non-SP (NSP) subpopulations. In contrast, NSP cell cultures produced NSP cells and failed to produce SP cells. These SP cells showed self-renewal capability by serial colony-forming assay. Microarray expression analysis using a set of HTR-8/SVneo-SP and -NSP cells revealed that SP cells overexpressed several stemness genes including caudal type homeobox2 (CDX2) and bone morphogenic proteins (BMPs), and lymphocyte antigen 6 complex locus D (LY6D) gene was the most highly up-regulated in HTR-8/SVneo-SP cells. LY6D gene reduced its expression in the course of a 7-day cultivation in differentiation medium. SP cells tended to reduce its fraction by treatment of LY6D siRNA indicating that LY6D had potential to maintain cell proliferation of HTR-8/SVneo-SP cells. On ontology analysis, epithelial-mesenchymal transition (EMT) pathway was involved in the up-regulated genes on microarray analysis. HTR-SVneo-SP cells showed enhanced migration. This is the first report that LY6D was important for the maintenance of HTR-8/SVneo-SP cells. EMT was associated with the phenotype of these SP cells.

Remote sensing solutions for estimating runoff and recharge in arid environments.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Milewski, A.; Sultan, M.; Yan, E.

2009-06-30

Efforts to understand and to quantify precipitation and its partitioning into runoff evapo-transpiration, and recharge are often hampered by the absence or paucity of appropriate monitoring systems. We applied methodologies for rainfall-runoff and groundwater recharge computations that heavily rely on observations extracted from a wide-range of global remote sensing data sets (TRMM, SSM/I, Landsat TM, AVHRR, AMSR-E, and ASTER) using the arid Sinai Peninsula (SP; area: 61,000 km{sup 2}) and the Eastern Desert (ED; area: 220,000 km{sup 2}) of Egypt as our test sites. A two-fold exercise was conducted. Spatiotemporal remote sensing data (TRMM, AVHRR and AMSR-E) were extracted frommore » global data sets over the test sites using RESDEM, the Remote Sensing Data Extraction Model, and were then used to identify and to verify precipitation events throughout the past 10 years (1998-2007). This was accomplished by using an automated cloud detection technique to identify clouds and to monitor their propagation prior to and throughout the identified precipitation events, and by examining changes in soil moisture (extracted from AMSR-E data) following the identification of clouds. For the investigated period, 246 of 327 events were verified in the SP, and 179 of 304 in the ED. A catchment-based, continuous, semi-distributed hydrologic model (Soil Water and Assessment Tool model; SWAT) was calibrated against observed runoff values from Wadi Girafi Watershed (area: 3350 km{sup 2}) and then used to provide a continuous simulation (1998-2007) of the overland flow, channel flow, transmission losses, evaporation on bare soils and evapo-transpiration, and groundwater recharge for the major (area: 2014-22,030 km{sup 2}) watersheds in the SP (Watir, El-Arish, Dahab, and Awag) and the ED (Qena, Hammamat, Asyuti, Tarfa, El-Quffa, El-Batur, Kharit, Hodein, and Allaqi) covering 48% and 51% of the total areas of the SP and the ED, respectively. For the investigated watersheds in the SP, the average annual precipitation, average annual runoff, and average annual recharge through transmission losses were found to be: 2955 x 10{sup 6}m{sup 3}, 508 x 10{sup 6}m{sup 3} (17.1% total precipitation (TP)), and 463 x 10{sup 6}m{sup 3} (15.7% TP), respectively, whereas in the ED these values are: 807 x 10{sup 6}m{sup 3}, 77.8 x 10{sup 6}m{sup 3} (9.6% TP), and 171 x 10{sup 6}m{sup 3} (21.2% TP), respectively. Results demonstrate the enhanced opportunities for groundwater development in the SP (compared to the ED) and highlight the potential for similar applications in arid areas elsewhere. The adopted remote sensing-based, regionalization approach is not a substitute for traditional methodologies that rely on extensive field datasets from rain gauge and stream flow networks, yet could provide first-order estimates for rainfall, runoff, and recharge over large sectors of the arid world lacking adequate coverage with spatial and temporal precipitation and field data.« less

Trends in Streamflow Characteristics in Hawaii, 1913-2002

USGS Publications Warehouse

Oki, Delwyn S.

2004-01-01

The surface-water resources of Hawaii have significant cultural, aesthetic, ecologic, and economic importance. In Hawaii, surface-water resources are developed for both offstream uses (for example, drinking water, agriculture, and industrial uses) and instream uses (for example, maintenance of habitat and ecosystems, recreational activities, aesthetic values, maintenance of water quality, conveyance of irrigation and domestic water supplies, and protection of traditional and customary Hawaiian rights). Possible long-term trends in streamflow characteristics have important implications for water users, water suppliers, resource managers, and citizens in the State. Proper management of Hawaii's streams requires an understanding of long-term trends in streamflow characteristics and their potential implications. Effects of long-term downward trends in low flows in streams include potential loss of habitat for native stream fauna and reduced water availability for offstream and instream water uses. Effects of long-term upward trends in high flows in streams include construction of bridges and water-conveyance structures that are potentially unsafe if they are not designed with proper consideration of trends in high flows.

Substance P enhances proliferation and paracrine potential of adipose-derived stem cells in vitro.

PubMed

Kim, Suna; Piao, Jiyuan; Son, Youngsook; Hong, Hyun Sook

2017-03-25

Stem cells have tremendous promise to treat intractable diseases. Notably, adipose-derived stem cells (ADSCs) are actively being investigated because of ease of sampling and high repopulation capacity in vitro. ADSCs can exert a therapeutic effect through differentiation and paracrine potential, and these actions have been proven in many diseases, including cutaneous and inflammatory diseases. Transplantation of ADSCs necessitates therapeutic quantities and thus, long term ex vivo culture of ADSCs. However, this procedure can impair the activity of ADSCs and provoke cellular senescence, leading to low efficacy in vivo. Accordingly, strategies to restore cellular activity and inhibit senescence of stem cells during ex vivo culture are needed for stem cell-based therapies. This study evaluated a potential supplementary role of Substance P (SP) in ADSC ex vivo culture. After confirming that the ADSC cell cycle was damaged by passage 6 (p6), ADSCs at p6 were cultured with SP, and their proliferation rates, cumulative cell numbers, cytokine profiles, and impact on T/endothelial cells were assessed. Long-term culture weakened proliferation ability and secretion of the cytokines, transforming growth factor-beta 1 (TGF-beta1), vascular endothelial growth factor (VEGF), and stromal cell derived factor-1 alpha (SDF-1alpha) in ADSCs. However, SP treatment reduced the population doubling time (PDT), enabling gain of a sufficient number of ADSCs at early passages. In addition, SP restored cytokine secretion, enhancing the ADSC-mediated paracrine effect on T cell and human umbilical vein endothelial cells (HUVECs). Taken together, these results suggest that SP can retain the therapeutic effect of ADSCs by elevating their proliferative and paracrine potential in ex vivo culture. Copyright © 2017 Elsevier Inc. All rights reserved.

Wetlands serve as natural sources for improvement of stream ecosystem health in regions affected by acid deposition

USGS Publications Warehouse

Pound, Katrina L; Lawrence, Gregory B.; Passy, Sophia I.

2013-01-01

For over 40 years, acid deposition has been recognized as a serious international environmental problem, but efforts to restore acidified streams and biota have had limited success. The need to better understand the effects of different sources of acidity on streams has become more pressing with the recent increases in surface water organic acids, or 'brownification' associated with climate change and decreased inorganic acid deposition. Here, we carried out a large scale multi-seasonal investigation in the Adirondacks, one of the most acid-impacted regions in the United States, to assess how acid stream producers respond to local and watershed influences and whether these influences can be used in acidification remediation. We explored the pathways of wetland control on aluminum chemistry and diatom taxonomic and functional composition. We demonstrate that streams with larger watershed wetlands have higher organic content, lower concentrations of acidic anions, and lower ratios of inorganic to organic monomeric aluminum, all beneficial for diatom biodiversity and guilds producing high biomass. Although brownification has been viewed as a form of pollution, our results indicate that it may be a stimulating force for biofilm producers with potentially positive consequences for higher trophic levels. Our research also reveals that the mechanism of watershed control of local stream diatom biodiversity through wetland export of organic matter is universal in running waters, operating not only in hard streams, as previously reported, but also in acid streams. Our findings that the negative impacts of acid deposition on Adirondack stream chemistry and biota can be mitigated by wetlands have important implications for biodiversity conservation and stream ecosystem management. Future acidification research should focus on the potential for wetlands to improve stream ecosystem health in acid-impacted regions and their direct use in stream restoration, for example, through stream rechanneling or wetland construction in appropriate hydrologic settings.

Hypoxylon sp., an endophyte of Persea indica, producing 1,8-cineole and other bioactive volatiles with fuel potential.

PubMed

Tomsheck, Angela R; Strobel, Gary A; Booth, Eric; Geary, Brad; Spakowicz, Dan; Knighton, Berk; Floerchinger, Cody; Sears, Joe; Liarzi, Orna; Ezra, David

2010-11-01

An endophytic fungus of Persea indica was identified, on the basis of its anamorphic stage, as Nodulosporium sp. by SEM. Partial sequence analysis of ITS rDNA revealed the identity of the teleomorphic stage of the fungus as Hypoxylon sp. It produces an impressive spectrum of volatile organic compounds (VOCs), most notably 1,8-cineole, 1-methyl-1,4-cyclohexadiene, and tentatively identified (+)-.alpha.-methylene-.alpha.-fenchocamphorone, among many others, most of which are unidentified. Six-day-old cultures of Hypoxylon sp. displayed maximal VOC-antimicrobial activity against Botrytis cinerea, Phytophthora cinnamomi, Cercospora beticola, and Sclerotinia sclerotiorum suggesting that the VOCs may play some role in the biology of the fungus and its survival in its host plant. Media containing starch- or sugar-related substrates best supported VOC production by the fungus. Direct on-line quantification of VOCs was measured by proton transfer mass spectrometry covering a continuous range with optimum VOC production occurred at 6 days at 145 ppmv with a rate of production of 7.65 ppmv/h. This report unequivocally demonstrates that 1,8-cineole (a monoterpene) is produced by a microorganism, which represents a novel and important source of this compound. This monoterpene is an octane derivative and has potential use as a fuel additive as do the other VOCs of this organism. Thus, fungal sourcing of this compound and other VOCs as produced by Hypoxylon sp. greatly expands their potential applications in medicine, industry, and energy production.

Laterodorsal Nucleus of the Thalamus: A Processor of Somatosensory Inputs

PubMed Central

BEZDUDNAYA, TATIANA; KELLER, ASAF

2009-01-01

The laterodorsal (LD) nucleus of the thalamus has been considered a “higher order” nucleus that provides inputs to limbic cortical areas. Although its functions are largely unknown, it is often considered to be involved in spatial learning and memory. Here we provide evidence that LD is part of a hitherto unknown pathway for processing somatosensory information. Juxtacellular and extracellular recordings from LD neurons reveal that they respond to vibrissa stimulation with short latency (median = 7 ms) and large magnitude responses (median = 1.2 spikes/stimulus). Most neurons (62%) had large receptive fields, responding to six and more individual vibrissae. Electrical stimulation of the trigeminal nucleus interpolaris (SpVi) evoked short latency responses (median = 3.8 ms) in vibrissa-responsive LD neurons. Labeling produced by anterograde and retrograde neuroanatomical tracers confirmed that LD neurons receive direct inputs from SpVi. Electrophysiological and neuroanatomical analyses revealed also that LD projects upon the cingulate and retrosplenial cortex, but has only sparse projections to the barrel cortex. These findings suggest that LD is part of a novel processing stream involved in spatial orientation and learning related to somatosensory cues. PMID:18273888

A comparative study on phyllosphere nitrogen fixation by newly isolated Corynebacterium sp. & Flavobacterium sp. and their potentialities as biofertilizer.

PubMed

Giri, S; Pati, B R

2004-01-01

A number of nitrogen fixing bacteria has been isolated from forest phyllosphere on the basis of nitrogenase activity. Among them two best isolates are selected and identified as Corynebacterium sp. AN1 & Flavobacterium sp. TK2 able to reduce 88 and 132 n mol of acetylene (10(8)cells(-1)h(-1)) respectively. They were grown in large amount and sprayed on the phyllosphere of maize plants as a substitute for nitrogenous fertilizer. Marked improvements in growth and total nitrogen content of the plant have been observed by the application of these nitrogen-fixing bacteria. An average 30-37% increase in yield was obtained, which is nearer to chemical fertilizer treatment. Comparatively better effect was obtained by application of Flavobacterium sp.

Cultivation of Microalgae Chlorella sp on Fresh Water and Waste Water of Tofu Industry

NASA Astrophysics Data System (ADS)

Widayat; Philia, John; Wibisono, Jessica

2018-02-01

Chlorella sp. is a microalgae that potential for food supplement, pharmaceuticals, animal feed, aqua culture and cosmetics. Chlorella sp. commonly growth in sea water. Indonesia as a producer of tofu generated more liquid waste. Nutrient that contained in the tofu wastewater are very useful for the production of microalgae. Cultivation carried out for 7 days at different percent volume of tofu liquid waste showed that the more volume of tofu liquid waste make them longer process decipherment of polymer compounds in the waste, that's make the growth rate of Chlorella sp. are slowness. Variable of10%V has the fastest growth rate. While, 90% v/v variable has the highest concentration of algae. It shows that Chlorella sp. better to grows in tofu wastewater than seawater.

Water-supply potential of major streams and the Upper Floridan Aquifer in the vicinity of Savannah, Georgia

USGS Publications Warehouse

Garza, Reggina; Krause, Richard E.

1997-01-01

Surface- and ground-water resources in the Savannah, Georgia, area were evaluated for potential water-supply development. Stream-discharge and water-quality data were analyzed for two major streams considered to be viable water-supply sources. A ground-water flow model was developed to be used in conjunction with other previously calibrated models to simulate the effects of additional pumpage on water levels near areas of saltwater intrusion at Brunswick and seawater encroachment at Hilton Head Island. Hypothetical scenarios also were simulated involving redistributions and small increases, and decreases in pumpage.

Transient over-expression of barley BAX Inhibitor-1 weakens oxidative defence and MLA12-mediated resistance to Blumeria graminis f.sp. hordei.

PubMed

Eichmann, Ruth; Dechert, Cornelia; Kogel, Karl-Heinz; Hückelhoven, Ralph

2006-11-01

SUMMARY BAX Inhibitor-1 (BI-1) is a conserved cell death suppressor protein. In barley, BI-1 (HvBI-1) expression is induced upon powdery mildew infection and when over-expressed in epidermal cells of barley, HvBI-1 induces susceptibility to the biotrophic fungal pathogen Blumeria graminis. We co-expressed mammalian pro-apoptotic BAX together with HvBI-1, and the mammalian BAX antagonist BCL-X(L) in barley epidermal cells. BAX expression led to cessation of cytoplasmic streaming and collapse of the cytoplasm while co-expression of HvBI-1 and BCL-X(L) partially or completely, respectively, rescued cells from BAX lethality. When B. graminis was attacking epidermal cells, a green fluorescent protein fusion of HvBI-1 accumulated at the site of attempted penetration and was also present around haustoria. Over-expression of HvBI-1 in epidermal cells weakened a cell-wall-associated local hydrogen peroxide burst in a resistant mlo-mutant genotype and supported haustoria accommodation in race-specifically resistant MLA12-barley. HvBI-1 is a cell death regulator protein of barley with the potential to suppress host defence reactions.

Bio-control and plant growth promotion potential of Salicaceae endophytes

USDA-ARS?s Scientific Manuscript database

Microbial endophytes are important for growth benefits in a variety of plant species. Microbial communities of the poplar (Populus sp.) and willow (Salix sp.) endosphere have been demonstrated to be important for plant growth promotion, protection from abiotic stresses, and degradation of toxic subs...

Vibrio sp. DSM 14379 pigment production--a competitive advantage in the environment?

PubMed

Starič, Nejc; Danevčič, Tjaša; Stopar, David

2010-10-01

The ability to produce several antibacterial agents greatly increases the chance of producer's survival. In this study, red-pigmented Vibrio sp. DSM 14379 and Bacillus sp., both isolated from the same sampling volume from estuarine waters of the Northern Adriatic Sea, were grown in a co-culture. The antibacterial activity of the red pigment extract was tested on Bacillus sp. in microtiter plates. The MIC(50) for Bacillus sp. was estimated to be around 10⁻⁵ mg/L. The extract prepared form the nonpigmented mutant of Vibrio sp. had no antibacterial effect. The pigment production of Vibrio sp. was studied under different physicochemical conditions. There was no pigment production at high or low temperatures, high or low salt concentrations in peptone yeast extract (PYE) medium, low glucose concentration in mineral growth medium or high glucose concentration in PYE medium. This indicates that the red pigment production is a luxurious good that Vibrio sp. makes only under favorable conditions. The Malthusian fitness of Bacillus sp. in a co-culture with Vibrio sp. under optimal environmental conditions dropped from 4.0 to -7.6, which corresponds to three orders of magnitude decrease in the number of CFU relative to the monoculture. The nonpigmented mutant of Vibrio sp. in a co-culture with Bacillus sp. had a significant antibacterial activity. This result shows that studying antibacterial properties in isolation (i.e. pigment extract only) may not reveal full antibacterial potential of the bacterial strain. The red pigment is a redundant antibacterial agent of Vibrio sp.

Stream Chemistry After An Operational Fertilizer Application in the Ouachita Mountains

Treesearch

Hal O. Liechty; Jami Nettles; Daniel A. Marion; Donald J. Turton

1999-01-01

The amount of forested land annually fertilized in the southern United States has increased rapidly in the past 10 years. Although forest growth responses to fertilizer are fairly well understood, knowledge concerning the effects of fertilization on stream chemistry and health in this region is limited. To better understand the potential changes in stream chemistry...

Are leaf breakdown rates a useful measure of stream integrity along an agricultural landuse gradient?

Treesearch

E.M. Hagen; J.R. Webster; E.F. Benfield

2006-01-01

Biological indicators often are used to assess and manage water quality in anthropogenically altered stream systems. Leaf breakdown has the potential to be a good indicator of stream integrity because it integrates a varietyof biological, chemical, and physical conditions. Red maple (Acer rubrum L.) leaf breakdown rates were measured along a gradient...

Influences of spatial and temporal variation on fish-habitat relationships defined by regression quantiles

Treesearch

Jason B. Dunham; Brian S. Cade; James W. Terrell

2002-01-01

We used regression quantiles to model potentially limiting relationships between the standing crop of cutthroat trout Oncorhynchus clarki and measures of stream channel morphology. Regression quantile models indicated that variation in fish density was inversely related to the width:depth ratio of streams but not to stream width or depth alone. The...

Effects of forest fire on headwater stream macroinvertebrate communities in eastern Washington, U.S.A.

Treesearch

Cassie D. Mellon; Mark S. Wipfli; Judith L. Li

2008-01-01

1. Recent increases in fire frequency in North America have focused interest on potential effects on adjacent ecosystems, induding streams. Headwaters could be particularly affected because of their high connectivity to riparian and downstream aquatic ecosystems through aquatic invertebrate drift and emergence. 2. Headwater streams from replicated burned and control...

Assessment of corn and banana leaves as potential standardized substrates for leaf decomposition in streams affected by mountaintop removal coal mining, West Virginia, USA

EPA Science Inventory

Mountaintop removal and valley filling is a method of coal mining that buries Central Appalachian headwater streams. A 2007 federal court ruling highlighted the need for measurement of both ecosystem structure and function when assessing streams for mitigaton. Rapid functional as...

Stream protection with small cable yarding systems

Treesearch

Penn A. Peters; Chris B. LeDoux

1984-01-01

Small cable yarder systems that can be purchased and operated by independent logging contractors have less potential negative impact on water quality than ground-based systems operating on steep terrain because they do not require such an intense road system. Stream protection costs were estimated at $3.78 per lineal foot of stream when a typical small yarder (Koller K...

Measuring the DC electrokinetic coupling coefficient of porous rock samples in the laboratory : a new apparatus

NASA Astrophysics Data System (ADS)

Walker, E.; Tardif, E.; Glover, P. W.; Ruel, J.; Hadjigeorgiou, J.

2009-12-01

Electro-kinetic properties of rocks allow the generation of an electric potential by the flow of an aqueous fluid through a porous media. The electrical potential is called the streaming potential, and the streaming potential coupling coefficient Cs is the ratio of the generated electric potential to the pressure difference that causes the fluid flow. The streaming potential coupling coefficient for rocks is described in the steady-state regime by the well known Helmholtz-Smoluchowski equation, and is supported by a relatively small body of experimental data. However, the electrokinetic coupling coefficient measurement is important for the further development of different area of expertise such as reservoir prospection and monitoring, volcano and earthquake monitoring and the underground sequestration of CO2. We have designed, constructed and tested a new experimental cell that is capable of measuring the DC streaming potential of consolidated and unconsolidated porous media. The new cell is made from stainless steel, perspex and other engineering polymers. Cylindrical samples of 25.4 mm can be placed in a deformable rubber sleeve and subjected to a radial confining pressure of compressed nitrogen up to 4.5 MPa. Actively degassed aqueous fluids can be flowed by an Agilent 1200 series binary pump (2 to 10 mL/min). A maximum input fluid pressure of 2.5 MPa can be applied, with a maximum exit pressure of 1 MPa to ensure sample saturation is stable and to reduce gas bubbles. The pressures each side of the sample are measured by high stability pressure transducers (Omega PX302-300GV), previously calibrated by a high precision differential pressure transducer Endress and Hauser Deltabar S PMD75. The streaming potentials are measured with Harvard Apparatus LF-1 and LF-2 Ag/AgCl non-polarising miniature electrodes. An axial pressure is applied (1 to 6.5 MPa) to counteract the radial pressure and provide additional axial load with a hydraulic piston. It is our intention to complete the testing of the cell and to use it to measure the electrokinetic properties of porous rocks in the DC regime in order to provide sufficient data to improve the theories and models of DC streaming potentials.

Measuring the DC electrokinetic coupling coefficient of porous rock samples in the laboratory : A new apparatus

NASA Astrophysics Data System (ADS)

Walker, Emilie; Tardif, Eric; Glover, Paul; Ruel, Jean; Lalande, Guillaume; Hadjigeorgiou, John

2010-05-01

Electro-kinetic properties of rocks allow the generation of an electric potential by the flow of an aqueous fluid through a porous media. The electrical potential is called the streaming potential, and the streaming potential coupling coefficient is the ratio of the generated electric potential to the pressure difference that causes the fluid flow. The streaming potential coupling coefficient for rocks is described in the steady-state regime by the well known Helmholtz-Smoluchowski equation, and is supported by a relatively small body of experimental data. However, the electrokinetic coupling coefficient measurement is important for the further development of different area of expertise such as reservoir prospection and monitoring, volcano and earthquake monitoring and the underground sequestration of carbon dioxide. We have designed, constructed and tested a new experimental cell that is capable of measuring the DC streaming potential of consolidated and unconsolidated porous media. The new cell is made from stainless steel, perspex and other engineering polymers. Cylindrical samples of 25.4 mm can be placed in a deformable rubber sleeve and subjected to a radial confining pressure of compressed nitrogen up to 4.5 MPa. Actively degassed aqueous fluids can be flowed by an Agilent 1200 series binary pump (2 to 10 mL/min). A maximum input fluid pressure of 2.5 MPa can be applied, with a maximum exit pressure of 1 MPa to ensure sample saturation is stable and to reduce gas bubbles. The pressures each side of the sample are measured by high stability pressure transducers (Omega PX302-300GV), previously calibrated by a high precision differential pressure transducer Endress and Hauser Deltabar S PMD75. The streaming potentials are measured with Harvard Apparatus LF-1 and LF-2 Ag/AgCl non-polarising miniature electrodes. An axial pressure is applied (1 to 6.5 MPa) to counteract the radial pressure and provide additional axial load with a hydraulic piston. It is our intention to complete the testing of the cell and to use it to measure the electrokinetic properties of porous rocks in the DC regime in order to provide sufficient data to improve the theories and models of DC streaming potentials.

A novel image encryption algorithm based on chaos maps with Markov properties

NASA Astrophysics Data System (ADS)

Liu, Quan; Li, Pei-yue; Zhang, Ming-chao; Sui, Yong-xin; Yang, Huai-jiang

2015-02-01

In order to construct high complexity, secure and low cost image encryption algorithm, a class of chaos with Markov properties was researched and such algorithm was also proposed. The kind of chaos has higher complexity than the Logistic map and Tent map, which keeps the uniformity and low autocorrelation. An improved couple map lattice based on the chaos with Markov properties is also employed to cover the phase space of the chaos and enlarge the key space, which has better performance than the original one. A novel image encryption algorithm is constructed on the new couple map lattice, which is used as a key stream generator. A true random number is used to disturb the key which can dynamically change the permutation matrix and the key stream. From the experiments, it is known that the key stream can pass SP800-22 test. The novel image encryption can resist CPA and CCA attack and differential attack. The algorithm is sensitive to the initial key and can change the distribution the pixel values of the image. The correlation of the adjacent pixels can also be eliminated. When compared with the algorithm based on Logistic map, it has higher complexity and better uniformity, which is nearer to the true random number. It is also efficient to realize which showed its value in common use.

Response of Aquatic Bacterial Communities to Hydraulic Fracturing in Northwestern Pennsylvania: A Five-Year Study.

PubMed

Ulrich, Nikea; Kirchner, Veronica; Drucker, Rebecca; Wright, Justin R; McLimans, Christopher J; Hazen, Terry C; Campa, Maria F; Grant, Christopher J; Lamendella, Regina

2018-04-09

Horizontal drilling and hydraulic fracturing extraction procedures have become increasingly present in Pennsylvania where the Marcellus Shale play is largely located. The potential for long-term environmental impacts to nearby headwater stream ecosystems and aquatic bacterial assemblages is still incompletely understood. Here, we perform high-throughput sequencing of the 16 S rRNA gene to characterize the bacterial community structure of water, sediment, and other environmental samples (n = 189) from 31 headwater stream sites exhibiting different histories of fracking activity in northwestern Pennsylvania over five years (2012-2016). Stream pH was identified as a main driver of bacterial changes within the streams and fracking activity acted as an environmental selector for certain members at lower taxonomic levels within stream sediment. Methanotrophic and methanogenic bacteria (i.e. Methylocystaceae, Beijerinckiaceae, and Methanobacterium) were significantly enriched in sites exhibiting Marcellus shale activity (MSA+) compared to MSA- streams. This study highlighted potential sentinel taxa associated with nascent Marcellus shale activity and some of these taxa remained as stable biomarkers across this five-year study. Identifying the presence and functionality of specific microbial consortia within fracking-impacted streams will provide a clearer understanding of the natural microbial community's response to fracking and inform in situ remediation strategies.

Effect of organic acids on biofilm formation and quorum signaling of pathogens from fresh fruits and vegetables.

PubMed

Amrutha, Balagopal; Sundar, Kothandapani; Shetty, Prathapkumar Halady

2017-10-01

Organic acids are known to be used as food preservatives due to their antimicrobial potential. This study evaluated the ability of three organic acids, namely, acetic acid, citric acid and lactic acid to manage E. coli and Salmonella sp. from fresh fruits and vegetables. Effect of these organic acids on biofilm forming ability and anti-quorum potential was also investigated. The effect of organic acids on inactivation of E. coli and Salmonella sp. on the surface of a selected vegetable (cucumber) was determined. The minimum inhibitory concentration of the organic acids were found to be 1.5, 2 and 0.2% in E. coli while it was observed to be 1, 1.5 and 1% in Salmonella sp. for acetic, citric and lactic acids respectively. Maximum inhibition of biofilm formation was recorded at 39.13% with lactic acid in E. coli and a minimum of 22.53% with citric acid in Salmonella sp. EPS production was affected in E. coli with lactic acid showing reduction by 13.42% while citric acid and acetic acid exhibited only 6.25% and 10.89% respectively. Swimming and swarming patterns in E. coli was notably affected by both acetic and lactic acids. Lactic and acetic acids showed higher anti-quorum sensing (QS) potential when compared to citric acid. 2% lactic acid showed a maximum inhibition of violacein production by 37.7%. Organic acids can therefore be used as potential quorum quenching agents in food industry. 2% lactic acid treatment on cucumber demonstrated that it was effective in inactivating E. coli and Salmonella sp. There was 1 log reduction in microbial count over a period of 6 days after the lactic acid treatment. Thus, organic acids can act as effective potential sanitizers in reducing the microbial load associated with fresh fruits and vegetables. Copyright © 2017 Elsevier Ltd. All rights reserved.

Biomimicry of surfactant protein C

PubMed Central

Brown, Nathan J.; Johansson, Jan; Barron, Annelise E.

2012-01-01

CONSPECTUS Since the widespread use of exogenous lung surfactant to treat neonatal respiratory distress syndrome, premature infant survival and respiratory morbidity have dramatically improved. Despite the effectiveness of the animal-derived surfactant preparations, there still remain some concerns and difficulties associated with their use. This has prompted investigation into the creation of synthetic surfactant preparations. However, to date, no clinically used synthetic formulation is as effective as the natural material. This is largely because the previous synthetic formulations lacked analogues of the hydrophobic proteins of the lung surfactant system, SP-B and SP-C, which are critical functional constituents. As a result, recent investigation has turned towards the development of a new generation of synthetic, biomimetic surfactants that contain synthetic phospholipids along with a mimic of the hydrophobic protein portion of lung surfactant. In this Account, we detail our efforts in creating accurate mimics of SP-C for use in a synthetic surfactant replacement therapy. Despite SP-C’s seemingly simple structure, the predominantly helical protein is extraordinarily challenging to work with given its extreme hydrophobicity and structural instability, which greatly complicates the creation of an effective SP-C analogue. Drawing inspiration from Nature, two promising biomimetic approaches have led to the creation of rationally designed biopolymers that recapitulate many of SP-C’s molecular features. The first approach utilizes detailed SP-C structure-activity relationships and amino acid folding propensities to create a peptide-based analogue, SP-C33. In SP-C33, the problematic and metastable poly-valine helix is replaced with a structurally stable, poly-leucine helix and includes a well placed positive charge to prevent aggregation. SP-C33 is both structurally stable and eliminates the association propensity of the native protein. The second approach follows the same design considerations, but makes use of a non-natural, poly-N-substituted glycine or “peptoid” scaffold to circumvent the difficulties associated with SP-C. By incorporating unique, biomimetic side chains in a non-natural backbone, the peptoid mimic captures both SP-C’s hydrophobic patterning and helical secondary structure. Despite the differences in structure, both SP-C33 and the SP-C peptoid mimic capture many requisite features of SP-C. In a surfactant environment, these analogues also replicate many of the key surface activities necessary for a functional biomimetic surfactant therapy while overcoming the difficulties associated with the natural protein. With improved stability, greater production potential, and elimination of possible pathogenic contamination, these biomimetic surfactant formulations offer the potential not only to improve the treatment of respiratory distress syndrome, but also the opportunity to treat other respiratory-related disorders. PMID:18834153

Complete genome sequence of Burkholderia sp. strain PAMC28687, a potential octopine-utilizing bacterium isolated from Antarctica lichen.

PubMed

Han, So-Ra; Yu, Sang-Cheol; Ahn, Do-Hwan; Park, Hyun; Oh, Tae-Jin

2016-05-20

We report the complete genome sequence of Burkholderia sp. PAMC28687, which was isolated from the Antarctica lichen Useea sp., for better understanding of its catabolic traits in utilizing octopine as a source of carbon/nitrogen between Burkholderia and lichen. The genome consists of three circular chromosomes with five circular plasmids for the total 6,881,273bp sized genome with a G+C content of 58.14%. Copyright © 2016 Elsevier B.V. All rights reserved.

Seven new species of Paleanotus (Annelida: Chrysopetalidae) described from Lizard Island, Great Barrier Reef, and coral reefs of northern Australia and the Indo-Pacific: two cryptic species pairs revealed between western Pacific Ocean and the eastern Indian Ocean.

PubMed

Watson, Charlotte

2015-09-18

Morphological investigation into the paleate genus Paleanotus Schmarda 1861 of the family Chrysopetalidae from northern Australian coral reefs, primarily Lizard Island and outlying reefs, included a complex of very small, slender individuals (length < 5 mm). This complex resolved into 7 new species, described herein: Paleanotus inornatus n. sp., P. adornatus n. sp., P. chrysos n. sp., P. aquifolia n. sp., P. latifolia n. sp., P. silus n. sp., and P. silopsis n. sp. A key is provided to the new species and Paleanotus distinguished from Treptopale and Hyalopale, two closely related genera. Diagnostic features of the apical structure and shape of the notochaetal main paleae plus median paleae shape and raised rib pattern, differentiates each species from the other. Gametous states are described. Two cryptic species pairs (Paleanotus silopsis n. sp. and P. silus n. sp.; Paleanotus aquifolia n. sp. and P. latifolia n. sp.) were identified. In each case one species is restricted to either the NE or NW Australian coast. In each pair the most eastern point for the NW Australian species range occurs at Darwin, western Arnhemland, Northern Territory. Additional material for each species pair extends their respective ranges northwards: NW Australia to Thailand, Andaman Sea, eastern Indian Ocean or NE Australia, Great Barrier Reef to the Philippines, western Pacific Ocean. Cryptic morphology and potential genetic diversity is discussed in Paleanotus inornatus n. sp. and P. adornatus n. sp. that possess overlapping widespread distribution patterns across northern Australia and Indo-Pacific reefs. The smallest bodied taxon, Paleanotus chrysos n. sp. is the only species with a Coral Sea range encompassing Lizard Island, Heron Island and New Caledonia.

Protection from JP-8 jet fuel induced immunotoxicity by administration of aerosolized substance P.

PubMed

Harris, D T; Sakiestewa, D; Robledo, R F; Witten, M

1997-01-01

Chronic exposure to jet fuel has been shown to cause human liver dysfunction, emotional dysfunction, abnormal electroencephalograms, shortened attention spans, and decreased sensorimotor speed. The United States Air Force has decided to implement the widespread use of JP-8 jet fuel in its operations, although a thorough understanding of its potential effects upon exposed personnel is unclear. Exposure to potential environment toxicants such as JP-8 may have significant effects on host physiology. Previous studies in mice have shown that short-term, low concentration JP-8 exposure had significant effects on the immune system; e.g., decreased viable immune cell numbers, decreased immune organ weights, and loss on immune function that persisted for extended periods of time (i.e., up to 4 weeks post-exposure). Previous studies have shown that JP-8 induced pulmonary dysfunction was associated with a decrease in levels of the neuropeptide substance P (SP) in lung lavage fluids. It was found that administration of aerosolized SP was able to protect exposed animals from such JP-8 induced pulmonary changes. In the current study, aerosolized SP was analyzed for its effects on JP-i induced immunotoxicity in exposed mice. It was observed that SP administration could protect JP-8 exposed animals from losses of viable immune cell numbers, but not losses in immune organ weights. Further, exposure of animals to SP inhibitors generally increased the immunotoxicity of JP-8 exposure. SP appeared to act on all immune cell populations equally as analyzed by flow cytometry, as no one immune cell population appeared to be preferentially protected by SP. Also, SP administration was capable of protecting JP-8 exposed animals from loss of immune function at all concentrations of JP-8 utilized (250-2500 mg/m3). Significantly, SP only needed to be administered for 15 minutes after JP-8 exposure, and was active at both 1 microM and 1 nM concentrations. Thus, SP administration appears to be a relatively simple and efficient means to reverse the immunotoxicity due to hydrocarbon exposure.

Monitoring and modelling of pumping-induced self-potentials for transmissivity estimation within a heterogeneous confined aquifer

NASA Astrophysics Data System (ADS)

DesRoches, Aaron J.; Butler, Karl E.

2016-12-01

Variations in self-potentials (SP) measured at surface during pumping of a heterogeneous confined fractured rock aquifer have been monitored and modelled in order to investigate capabilities and limitations of SP methods in estimating aquifer hydraulic properties. SP variations were recorded around a pumping well using an irregular grid of 31 non-polarizing Pb-PbCl2 that were referenced to a remote electrode and connected to a commercial multiplexer and digitizer/data logger through a passive lowpass filter on each channel. The lowpass filter reduced noise by a factor of 10 compared to levels obtained using the data logger's integration-based sampling method for powerline noise suppression alone. SP signals showed a linear relationship with water levels observed in the pumping and monitoring wells over the pumping period, with an apparent electrokinetic coupling coefficient of -3.4 mV · m-1. Following recent developments in SP methodology, variability of the SP response between different electrodes is taken as a proxy for lateral variations in hydraulic head within the aquifer and used to infer lateral variations in the aquifer's apparent transmissivity. In order to demonstrate the viability of this approach, SP is modelled numerically to determine its sensitivity to (i) lateral variations in the hydraulic conductivity of the confined aquifer and (ii) the electrical conductivity of the confining layer and conductive well casing. In all cases, SP simulated on the surface still varies linearly with hydraulic head modelled at the base on the confining layer although the apparent coupling coefficient changes to varying degrees. Using the linear relationship observed in the field, drawdown curves were inferred for each electrode location using SP variations observed over the duration of the pumping period. Transmissivity estimates, obtained by fitting the Theis model to inferred drawdown curves at all 31 electrodes, fell within a narrow range of (2.0-4.2) × 10-3 m2 · s-1 and were consistent with values measured in the pumping and monitoring wells. This approach will be of particular interest where monitoring wells are lacking for direct measurement, and SP on the surface can be used to quickly estimate hydraulic properties.

Electrokinetic energy conversion efficiency of viscoelastic fluids in a polyelectrolyte-grafted nanochannel.

PubMed

Jian, Yongjun; Li, Fengqin; Liu, Yongbo; Chang, Long; Liu, Quansheng; Yang, Liangui

2017-08-01

In order to conduct extensive investigation of energy harvesting capabilities of nanofluidic devices, we provide analytical solutions for streaming potential and electrokinetic energy conversion (EKEC) efficiency through taking the combined consequences of soft nanochannel, a rigid nanochannel whose surface is covered by charged polyelectrolyte layer, and viscoelastic rheology into account. The viscoelasticity of the fluid is considered by employing the Maxwell constitutive model when the forcing frequency of an oscillatory driving pressure flow matches with the inverse of the relaxation time scale of a typical viscoelastic fluid. We compare the streaming potential and EKEC efficiency with those of a rigid nanochannel, having zeta potential equal to the electrostatic potential at the solid-polyelectrolyte interface of the soft nanochannels. Within the present selected parameter ranges, it is shown that the different peaks of maximal streaming potential and EKEC efficiency for the rigid nanochannel are larger than those for the soft nanochannel when forcing frequencies of the driving pressure gradient are close to resonating frequencies. However, more enhanced streaming potential and EKEC efficiency for a soft nanochannel can be found in most of the regions away from these resonant frequencies. Moreover, the influence of several dimensionless parameters on EKEC efficiency is discussed in detail. Finally, within the given parametric regions, the maximum efficiency at some resonant frequency obtained in present analysis is about 25%. Copyright © 2017 Elsevier B.V. All rights reserved.

Map showing abundance and distribution of copper in oxide residues of stream-sediment samples, Medford 1 degree by 2 degrees Quadrangle, Oregon-California

USGS Publications Warehouse

Whittington, Charles L.; Grimes, David J.; Leinz, Reinhard W.

1985-01-01

Stream-sediment sampling in the Medford 1o x 2o quadrangle was undertaken to provide to aid in assessment of the mineral resource potential of the quadrangle. This map presents data on the abundance and distribution of copper in the oxide residues (oxalic-acid leachates) of stream sediments and in the minus-0.18-mm sieve fraction of selected stream sediments collected in the quadrangle. 

Map showing abundance and distribution of arsenic in oxide residues of stream-sediment samples, Medford 1 degree by 2 degrees Quadrangle, Oregon-California

USGS Publications Warehouse

Whittington, Charles L.; Leinz, Reinhard W.; Grimes, David J.

1985-01-01

Stream-sediment sampling in the Medford 1o x 2o quadrangle was undertaken to provide to aid in assessment of the mineral resource potential of the quadrangle. This map presents data on the abundance and distribution of copper in the oxide residues (oxalic-acid leachates) of stream sediments and in the minus-0.18-mm sieve fraction of selected stream sediments collected in the quadrangle. 

Experimental measurements of the SP response to concentration and temperature gradients in sandstones with application to subsurface geophysical monitoring

NASA Astrophysics Data System (ADS)

Leinov, E.; Jackson, M. D.

2014-09-01

Exclusion-diffusion potentials arising from temperature gradients are widely neglected in self-potential (SP) surveys, despite the ubiquitous presence of temperature gradients in subsurface settings such as volcanoes and hot springs, geothermal fields, and oil reservoirs during production via water or steam injection. Likewise, with the exception of borehole SP logging, exclusion-diffusion potentials arising from concentration gradients are also neglected or, at best, it is assumed that the diffusion potential dominates. To better interpret these SP sources requires well-constrained measurements of the various coupling terms. We report measurements of thermoelectric and electrochemical exclusion-diffusion potentials across sandstones saturated with NaCl brine and find that electrode effects can dominate the measured voltage. After correcting for these, we find that Hittorf transport numbers are the same within experimental error regardless of whether ion transport occurs in response to temperature or concentration gradients over the range of NaCl concentration investigated that is typical of natural systems. Diffusion potentials dominate only if the pore throat radius is more than approximately 4000 times larger than the diffuse layer thickness. In fine-grained sandstones with small pore throat diameter, this condition is likely to be met only if the saturating brine is of relatively high salinity; thus, in many cases of interest to earth scientists, exclusion-diffusion potentials will comprise significant contributions from both ionic diffusion through, and ionic exclusion from, the pore space of the rock. However, in coarse-grained sandstones, or sandstones saturated with high-salinity brine, exclusion-diffusion potentials can be described using end-member models in which ionic exclusion is neglected. Exclusion-diffusion potentials in sandstones depend upon pore size and salinity in a complex way: they may be positive, negative, or zero depending upon sandstone rock texture (expressed here by the pore radius r) and salinity.

Soil disturbance as a driver of increased stream salinity in a semiarid watershed undergoing energy development

USGS Publications Warehouse

Bern, Carleton R.; Clark, Melanie L.; Schmidt, Travis S.; Holloway, JoAnn M.; Mcdougal, Robert

2015-01-01

Salinization is a global threat to the quality of streams and rivers, but it can have many causes. Oil and gas development were investigated as one of several potential causes of changes in the salinity of Muddy Creek, which drains 2470 km2 of mostly public land in Wyoming, U.S.A. Stream discharge and salinity vary with seasonal snowmelt and define a primary salinity-discharge relationship. Salinity, measured by specific conductance, increased substantially in 2009 and was 53-71% higher at low discharge and 33-34% higher at high discharge for the years 2009-2012 compared to 2005-2008. Short-term processes (e.g., flushing of efflorescent salts) cause within-year deviations from the primary relation but do not obscure the overall increase in salinity. Dissolved elements associated with increased salinity include calcium, magnesium, and sulfate, a composition that points to native soil salts derived from marine shales as a likely source. Potential causes of the salinity increase were evaluated for consistency by using measured patterns in stream chemistry, slope of the salinity-discharge relationship, and inter-annual timing of the salinity increase. Potential causes that were inconsistent with one or more of those criteria included effects from precipitation, evapotranspiration, reservoirs, grazing, irrigation return flow, groundwater discharge, discharge of energy co-produced waters, and stream habitat restoration. In contrast, surface disturbance of naturally salt-rich soil by oil and gas development activities, such as pipeline, road, and well pad construction, is a reasonable candidate for explaining the salinity increase. As development continues to expand in semiarid lands worldwide, the potential for soil disturbance to increase stream salinity should be considered, particularly where soils host substantial quantities of native salts.

Oscheius wisconsinensis n. sp. (Nematoda: Rhabditidae), a potential entomopathogenic nematode from the marshlands of Wisconsin

USDA-ARS?s Scientific Manuscript database

Oscheius wisconsinensis n. sp. (Rhabditidae) was recovered through the Galleria bait method from a wild cranberry marsh in Jackson County, Wisconsin, USA. Morphological studies with light microscopy and scanning electron microscopy, as well as molecular analyses of the near-full-length small subunit...

Citridones, new potentiators of antifungal miconazole activity, produced by Penicillium sp. FKI-1938. I. Taxonomy, fermentation, isolation and biological properties.

PubMed

Fukuda, Takashi; Yamaguchi, Yuichi; Masuma, Rokuro; Tomoda, Hiroshi; Omura, Satoshi

2005-05-01

New phenylfuropyridinones and related compounds, designated citridones A, B, B' and C, were isolated along with known CJ-16,173, from the culture broth of Penicillium sp. FKI-1938 by solvent extraction, silica gel column chromatography and HPLC. Citridones (75 microM) potentiate the miconazole activity against Candida albicans, decreasing the IC50 value of miconazole from 14.5 nM to 3.5 to approximately 6.3 nM.

Teaching and Technology Transfer as Alternative Revenue Streams: A Primer on the Potential Legal Implications for UK Universities

ERIC Educational Resources Information Center

Van Hoorebeek, Mark; Marson, James

2005-01-01

Purpose: The purpose of this paper is to assess the financial and intellectual issues facing the university sector as many institutions in the UK pursue alternative revenue streams. As a consequence to the increasing financial pressures, university departments are increasingly exposed to new forms of potential litigation and also face the risk to…

WEPPCAT: An Online tool for assessing and managing the potential impacts of climate change on sediment loading to streams using the Water Erosion Prediction Project (WEPP) Model

EPA Science Inventory

WEPPCAT is an on-line tool that provides a flexible capability for creating user-determined climate change scenarios for assessing the potential impacts of climate change on sediment loading to streams using the USDA’s Water Erosion Prediction Project (WEPP) Model. In combination...

Streaming potential of superhydrophobic microchannels.

PubMed

Park, Hung Mok; Kim, Damoa; Kim, Se Young

2017-03-01

For the purpose of gaining larger streaming potential, it has been suggested to employ superhydrophobic microchannels with a large velocity slip. There are two kinds of superhydrophobic surfaces, one having a smooth wall with a large Navier slip coefficient caused by the hydrophobicity of the wall material, and the other having a periodic array of no- shear slots of air pockets embedded in a nonslip wall. The electrokinetic flows over these two superhydrophobic surfaces are modelled using the Navier-Stokes equation and convection-diffusion equations of the ionic species. The Navier slip coefficient of the first kind surfaces and the no-shear slot ratio of the second kind surfaces are similar in the sense that the volumetric flow rate increases as these parameter values increase. However, although the streaming potential increases monotonically with respect to the Navier slip coefficient, it reaches a maximum and afterward decreases as the no-shear ratio increases. The results of the present investigation imply that the characterization of superhydrophobic surfaces employing only the measurement of volumetric flow rate against pressure drop is not appropriate and the fine structure of the superhydrophobic surfaces must be verified before predicting the streaming potential and electrokinetic flows accurately. © 2016 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Rock property measurements and analysis of selected igneous, sedimentary, and metamorphic rocks from worldwide localities

USGS Publications Warehouse

Johnson, Gordon R.

1983-01-01

Dry bulk density and grain density measurements were made on 182 samples of igneous, sedimentary, and metamorphic rocks from various world-wide localities. Total porosity values and both water-accessible and helium-accessible porosities were calculated from the density data. Magnetic susceptibility measurements were made on the solid samples and permeability and streaming potentials were concurrently measured on most samples. Dry bulk densities obtained using two methods of volume determination, namely direct measurement and Archlmedes principle, were nearly equivalent for most samples. Grain densities obtained on powdered samples were typically greater than grain densities obtained on solid samples, but differences were usually small. Sedimentary rocks had the highest percentage of occluded porosity per rock volume whereas metamorphic rocks had the highest percentage of occluded porosity per total porosity. There was no apparent direct relationship between permeability and streaming potential for most samples, although there were indications of such a relationship in the rock group consisting of granites, aplites, and syenites. Most rock types or groups of similar rock types of low permeability had, when averaged, comparable levels of streaming potential per unit of permeability. Three calcite samples had negative streaming potentials.

Variable cycle engines for advanced supersonic transports

NASA Technical Reports Server (NTRS)

Howlett, R. A.; Kozlowski, H.

1975-01-01

Variable Cycle Engines being studied for advanced commercial supersonic transports show potential for significant environmental and economic improvements relative to 1st generation SST engines. The two most promising concepts are: a Variable Stream Control Engine and a Variable Cycle Engine with a rear flow-control valve. Each concept utilizes variable components and separate burners to provide independent temperature and velocity control for two coannular flow streams. Unique fuel control techniques are combined with cycle characteristics that provide low fuel consumption, similar to a turbojet engine, for supersonic operation. This is accomplished while retaining the good subsonic performance features of a turbofan engine. A two-stream coannular nozzle shows potential to reduce jet noise to below FAR Part 36 without suppressors. Advanced burner concepts have the potential for significant reductions in exhaust emissions. In total, these unique engine concepts have the potential for significant overall improvements to the environmental and economic characteristics of advanced supersonic transports.

Effect of gamma radiation on growth and survival of common seed-borne fungi in India

NASA Astrophysics Data System (ADS)

Maity, J. P.; Chakraborty, A.; Chanda, S.; Santra, S. C.

2008-07-01

The present work describes radiation-induced effects of major seeds like Oryza sativa Cv-2233, Oryza sativa Cv-Shankar, Cicer arietinum Cv-local and seed-borne fungi like Alternaria sp., Aspergillus sp., Trichoderma sp. and Curvularia sp. 60Co gamma source at 25 °C emitting gamma ray at 1173 and 1332 keV energy was used for irradiation. Dose of gamma irradiation up to 3 kGy (0.12 kGy/h) was applied for exposing the seed and fungal spores. Significant depletion of the fungal population was noted with irradiation at 1-2 kGy, whereas germinating potential of the treated grain did not alter significantly. However, significant differential radiation response in delayed seed germination, colony formation of the fungal spores and their depletion of growth were noticed in a dose-dependent manner. The depletion of the fungal viability (germination) was noted within the irradiation dose range of 1-2 kGy for Alternaria sp. and Aspergillus sp., while 0.5-1 kGy for Trichoderma sp. and Curvularia sp. However, complete inhibition of all the selected fungi was observed above 2.5 kGy.

IDENTIFICATION AND MOLECULAR CHARACTERIZATION OF TWO SERINE PROTEASES AND THEIR POTENTIAL INVOLVEMENT IN PROPHENOLOXIDASE ACTIVATION IN Plutella xylostella.

PubMed

Gao, Gang; Xu, Xiao-Xia; Yu, Jing; Li, Lin-Miao; Ju, Wen-Yan; Jin, Feng-Liang; Freed, Shoaib

2016-09-01

The proteolytic activation of prophenoloxidase (proPO) is a humoral defense mechanism in insects and crustaceans. Phenoloxidase (PO) is produced as an inactive precursor namely, proPO and is activated via specific proteolytic cleavage by proPO-activating proteinase. The current research reports two novel serine proteinase genes (PxSP1-768 bp and PxSP2-816 bp) from Plutella xylostella, encoding 255 and 271 amino acid residues, respectively. Tissue distribution analyses by semiquantitative reverse transcription-PCR (RT-PCR) revealed the resultant genes to be primarily expressed in the hemocytes, while quantitative-RT-PCR (qRT-PCR) assay showed that transcription level of PxSP1 and PxSP2 increased significantly after injection of the fungal pathogen Beauveria bassiana. Purified recombinant fusion proteins of PxSP2 and PxSP1 were injected to New Zealand white rabbits and polyclonal antibodies were generated with the titers of 1:12,800. After silencing the expression of PxSP2 by RNAi, the PO activity decreased significantly. The results show that PxSP2 is involved in prophenoloxidase activation in P. xylostella. © 2016 Wiley Periodicals, Inc.

Chemoprevention of rat liver toxicity and carcinogenesis by Spirulina.

PubMed

Ismail, Mohamed F; Ali, Doaa A; Fernando, Augusta; Abdraboh, Mohamed E; Gaur, Rajiv L; Ibrahim, Wael M; Raj, Madhwa H G; Ouhtit, Allal

2009-06-02

Spirulina platensis (SP) is a filamentous cyanobacterium microalgae with potent dietary phyto-antioxidant, anti-inflammatory and anti-cancerous properties. The present study aimed to investigate the chemopreventive effect of SP against rat liver toxicity and carcinogenesis induced by dibutyl nitrosamine (DBN) precursors, and further characterized its underlying mechanisms of action in HepG2 cell line. Investigation by light and electron microscopy showed that DBN treatment induced severe liver injury and histopathological abnormalities, which were prevented by SP supplementation. The incidence of liver tumors was significantly reduced from 80 to 20% by SP. Immunohistochemical results indicated that both PCNA and p53 were highly expressed in the liver of DBN-treated rats, but were significantly reduced by SP supplementation. Molecular analysis indicated that SP treatment inhibited cell proliferation, which was accompanied by increased p21 and decreased Rb expression levels at 48hrs post-treatment. In addition, SP increased Bax and decreased Bcl-2 expression, indicating induction of apoptosis by 48hrs. This is the first report of the in vivo chemopreventive effect of SP against DBN-induced rat liver cytotoxicity and carcinogenesis, suggesting its potential use in chemoprevention of cancer.

Chemoprevention of rat liver toxicity and carcinogenesis by Spirulina

PubMed Central

Ismail, Mohamed F; Ali, Doaa A; Fernando, Augusta; Abdraboh, Mohamed E; Gaur, Rajiv L; Ibrahim, Wael M; Raj, Madhwa HG; Ouhtit, Allal

2009-01-01

Spirulina platensis (SP) is a filamentous cyanobacterium microalgae with potent dietary phyto-antioxidant, anti-inflammatory and anti-cancerous properties. The present study aimed to investigate the chemopreventive effect of SP against rat liver toxicity and carcinogenesis induced by dibutyl nitrosamine (DBN) precursors, and further characterized its underlying mechanisms of action in HepG2 cell line. Investigation by light and electron microscopy showed that DBN treatment induced severe liver injury and histopathological abnormalities, which were prevented by SP supplementation. The incidence of liver tumors was significantly reduced from 80 to 20% by SP. Immunohistochemical results indicated that both PCNA and p53 were highly expressed in the liver of DBN-treated rats, but were significantly reduced by SP supplementation. Molecular analysis indicated that SP treatment inhibited cell proliferation, which was accompanied by increased p21 and decreased Rb expression levels at 48hrs post-treatment. In addition, SP increased Bax and decreased Bcl-2 expression, indicating induction of apoptosis by 48hrs. This is the first report of the in vivo chemopreventive effect of SP against DBN-induced rat liver cytotoxicity and carcinogenesis, suggesting its potential use in chemoprevention of cancer. PMID:19521547

NK-1 receptor desensitization and neutral endopeptidase terminate SP-induced pancreatic plasma extravasation.

PubMed

Maa, J; Grady, E F; Kim, E H; Yoshimi, S K; Hutter, M M; Bunnett, N W; Kirkwood, K S

2000-10-01

Substance P (SP) induces plasma extravasation and neutrophil infiltration by activating the neurokinin-1 receptor (NK1-R). We characterized the mechanisms regulating this response in the rat pancreas. Anesthetized rats were continuously infused with SP, and plasma extravasation was quantified using Evans blue (EB) dye. Continuous infusion of SP (8 nmol. kg(-1). h(-1)) resulted in a threshold increase in EB at 15 min, a peak effect at 30 min (150% increase), and a return to baseline by 60 min. The NK1-R antagonist CP-96,345 blocked SP-induced plasma extravasation. After 60 min, the NK1-R was desensitized to agonist challenge. Resensitization was first detected at 20 min and increased until full recovery was seen at 30 min. Inhibition of the cell-surface protease neutral endopeptidase (NEP) by phosphoramidon potentiated the effect of exogenous SP; therefore endogenous NEP attenuates SP-induced plasma extravasation. Thus the continuous infusion of SP stimulates plasma extravasation in the rat pancreas via activation of the NK1-R, and these effects are terminated by both desensitization of the NK1-R and the cell-surface protease NEP.

Groundwater contaminants in the deep benthic zone of urban streams in Canada (Invited)

NASA Astrophysics Data System (ADS)

Roy, J. W.; Bickerton, G.

2010-12-01

There is little information available on the potential threat that groundwater containing land-based contaminants poses to aquatic ecosystems in urban environments. In this study, a rapid screening approach was applied at the stream reach-scale for eight urban streams (reaches from 100 to < 1000 m). The objective was to determine what types of groundwater contaminants could be detected in the deeper benthic zone of these streams, if any, to start to address questions of whether such contaminants are a concern and which types are the most problematic. The benthic community may be especially at risk since it may experience higher contaminant concentrations than the stream itself due to fewer losses from sorption, degradation and volatilization processes. For each stream, groundwater samples from below the stream bed (typically 25-75 cm) were collected using a drive-point mini-profiler at intervals of 10-15 m along the stream and were subsequently analysed for general chemistry and a wide range of common and emerging urban contaminants. For a few test streams with known contamination, the area of contamination was identified with this technique. In addition, previously unknown contaminants or areas of contamination were identified at all nine streams. Identified contaminants included benzene and other petroleum hydrocarbons, fuel oxygenates (e.g. MTBE), perchlorate, pesticides, artificial sweeteners, and various chlorinated solvent compounds. In addition, elevated levels of nitrate, phosphate, some heavy metals, including cadmium and arsenic, and elevated chloride (likely indicating road salt) were detected. Most streams had many different types of contaminants, often overlapping over small stretches, and together often covering substantial portions of the monitored reach. The findings provide support for this screening approach for delineating areas of potential ecological concern and identifying possible sources of groundwater contamination, for urban settings. They also suggest that the presence of multiple groundwater contaminants may be a more common threat to the benthic community of urban streams than currently perceived.