Optimized scalar promotion with load and splat SIMD instructions

DOEpatents

Eichenberger, Alexandre E [Chappaqua, NY; Gschwind, Michael K [Chappaqua, NY; Gunnels, John A [Yorktown Heights, NY

2012-08-28

Mechanisms for optimizing scalar code executed on a single instruction multiple data (SIMD) engine are provided. Placement of vector operation-splat operations may be determined based on an identification of scalar and SIMD operations in an original code representation. The original code representation may be modified to insert the vector operation-splat operations based on the determined placement of vector operation-splat operations to generate a first modified code representation. Placement of separate splat operations may be determined based on identification of scalar and SIMD operations in the first modified code representation. The first modified code representation may be modified to insert or delete separate splat operations based on the determined placement of the separate splat operations to generate a second modified code representation. SIMD code may be output based on the second modified code representation for execution by the SIMD engine.

Fast Fourier Transform algorithm design and tradeoffs

NASA Technical Reports Server (NTRS)

Kamin, Ray A., III; Adams, George B., III

1988-01-01

The Fast Fourier Transform (FFT) is a mainstay of certain numerical techniques for solving fluid dynamics problems. The Connection Machine CM-2 is the target for an investigation into the design of multidimensional Single Instruction Stream/Multiple Data (SIMD) parallel FFT algorithms for high performance. Critical algorithm design issues are discussed, necessary machine performance measurements are identified and made, and the performance of the developed FFT programs are measured. Fast Fourier Transform programs are compared to the currently best Cray-2 FFT program.

Educating resident physicians using virtual case-based simulation improves diabetes management: a randomized controlled trial.

PubMed

Sperl-Hillen, JoAnn; O'Connor, Patrick J; Ekstrom, Heidi L; Rush, William A; Asche, Stephen E; Fernandes, Omar D; Appana, Deepika; Amundson, Gerald H; Johnson, Paul E; Curran, Debra M

2014-12-01

To test a virtual case-based Simulated Diabetes Education intervention (SimDE) developed to teach primary care residents how to manage diabetes. Nineteen primary care residency programs, with 341 volunteer residents in all postgraduate years (PGY), were randomly assigned to a SimDE intervention group or control group (CG). The Web-based interactive educational intervention used computerized virtual patients who responded to provider actions through programmed simulation models. Eighteen distinct learning cases (L-cases) were assigned to SimDE residents over six months from 2010 to 2011. Impact was assessed using performance on four virtual assessment cases (A-cases), an objective knowledge test, and pre-post changes in self-assessed diabetes knowledge and confidence. Group comparisons were analyzed using generalized linear mixed models, controlling for clustering of residents within residency programs and differences in baseline knowledge. The percentages of residents appropriately achieving A-case composite clinical goals for glucose, blood pressure, and lipids were as follows: A-case 1: SimDE = 21.2%, CG = 1.8%, P = .002; A-case 2: SimDE = 15.7%, CG = 4.7%, P = .02; A-case 3: SimDE = 48.0%, CG = 10.4%, P < .001; and A-case 4: SimDE = 42.1%, CG = 18.7%, P = .004. The mean knowledge score and pre-post changes in self-assessed knowledge and confidence were significantly better for SimDE group than CG participants. A virtual case-based simulated diabetes education intervention improved diabetes management skills, knowledge, and confidence for primary care residents.

Overview and extensions of a system for routing directed graphs on SIMD architectures

NASA Technical Reports Server (NTRS)

Tomboulian, Sherryl

1988-01-01

Many problems can be described in terms of directed graphs that contain a large number of vertices where simple computations occur using data from adjacent vertices. A method is given for parallelizing such problems on an SIMD machine model that uses only nearest neighbor connections for communication, and has no facility for local indirect addressing. Each vertex of the graph will be assigned to a processor in the machine. Rules for a labeling are introduced that support the use of a simple algorithm for movement of data along the edges of the graph. Additional algorithms are defined for addition and deletion of edges. Modifying or adding a new edge takes the same time as parallel traversal. This combination of architecture and algorithms defines a system that is relatively simple to build and can do fast graph processing. All edges can be traversed in parallel in time O(T), where T is empirically proportional to the average path length in the embedding times the average degree of the graph. Additionally, researchers present an extension to the above method which allows for enhanced performance by allowing some broadcasting capabilities.

Empirical study of parallel LRU simulation algorithms

NASA Technical Reports Server (NTRS)

Carr, Eric; Nicol, David M.

1994-01-01

This paper reports on the performance of five parallel algorithms for simulating a fully associative cache operating under the LRU (Least-Recently-Used) replacement policy. Three of the algorithms are SIMD, and are implemented on the MasPar MP-2 architecture. Two other algorithms are parallelizations of an efficient serial algorithm on the Intel Paragon. One SIMD algorithm is quite simple, but its cost is linear in the cache size. The two other SIMD algorithm are more complex, but have costs that are independent on the cache size. Both the second and third SIMD algorithms compute all stack distances; the second SIMD algorithm is completely general, whereas the third SIMD algorithm presumes and takes advantage of bounds on the range of reference tags. Both MIMD algorithm implemented on the Paragon are general and compute all stack distances; they differ in one step that may affect their respective scalability. We assess the strengths and weaknesses of these algorithms as a function of problem size and characteristics, and compare their performance on traces derived from execution of three SPEC benchmark programs.

Deprivation in relation to urgent suspicion of head and neck cancer referrals in Glasgow.

PubMed

Zeitler, M; Fingland, P; Tikka, T; Douglas, C M; Montgomery, J

2018-06-01

To examine deprivation measured by the Scottish index of multiple deprivation (SIMD) and its relation to urgent suspicion of head and neck cancer referrals. A secondary aim was to examine the symptomatology generating urgent suspicion of cancer (USOC) referrals by SIMD category. All "urgent suspicion of cancer" referrals to the GGC ENT department over a one-year period, between 2015 and 2016, were reviewed. Information was recorded anonymously and included demographics and red flag referral symptoms. A total of 1998 patients were assessed, 43.4% (n = 867) were male. A total of 171 (8.6%) patients had primary head and neck cancer. A total of 61 patients had other types of cancer, giving an all cause cancer rate of 11.6%. About 71.3% of primary patients with head and neck cancer (HNC) were male. The most common SIMD category observed was SIMD1, the most common SIMD category yielding a primary head and neck cancer diagnosis was SIMD1. Neck lump was the commonest symptom amongst all SIMD categories. A link between deprivation and USOC referrals has been established. A difference in gender distribution between referrals and HNC was observed, more females are referred but a significantly higher number of patients with HNC are males. Neck lump is a very strong referral indicator for HNC and intermittent hoarseness is not. The findings from this analysis could be used to refine local referral patterns and priority of referral. © 2018 John Wiley & Sons Ltd.

Coding for parallel execution of hardware-in-the-loop millimeter-wave scene generation models on multicore SIMD processor architectures

NASA Astrophysics Data System (ADS)

Olson, Richard F.

2013-05-01

Rendering of point scatterer based radar scenes for millimeter wave (mmW) seeker tests in real-time hardware-in-the-loop (HWIL) scene generation requires efficient algorithms and vector-friendly computer architectures for complex signal synthesis. New processor technology from Intel implements an extended 256-bit vector SIMD instruction set (AVX, AVX2) in a multi-core CPU design providing peak execution rates of hundreds of GigaFLOPS (GFLOPS) on one chip. Real world mmW scene generation code can approach peak SIMD execution rates only after careful algorithm and source code design. An effective software design will maintain high computing intensity emphasizing register-to-register SIMD arithmetic operations over data movement between CPU caches or off-chip memories. Engineers at the U.S. Army Aviation and Missile Research, Development and Engineering Center (AMRDEC) applied two basic parallel coding methods to assess new 256-bit SIMD multi-core architectures for mmW scene generation in HWIL. These include use of POSIX threads built on vector library functions and more portable, highlevel parallel code based on compiler technology (e.g. OpenMP pragmas and SIMD autovectorization). Since CPU technology is rapidly advancing toward high processor core counts and TeraFLOPS peak SIMD execution rates, it is imperative that coding methods be identified which produce efficient and maintainable parallel code. This paper describes the algorithms used in point scatterer target model rendering, the parallelization of those algorithms, and the execution performance achieved on an AVX multi-core machine using the two basic parallel coding methods. The paper concludes with estimates for scale-up performance on upcoming multi-core technology.

A flexible algorithm for calculating pair interactions on SIMD architectures

NASA Astrophysics Data System (ADS)

Páll, Szilárd; Hess, Berk

2013-12-01

Calculating interactions or correlations between pairs of particles is typically the most time-consuming task in particle simulation or correlation analysis. Straightforward implementations using a double loop over particle pairs have traditionally worked well, especially since compilers usually do a good job of unrolling the inner loop. In order to reach high performance on modern CPU and accelerator architectures, single-instruction multiple-data (SIMD) parallelization has become essential. Avoiding memory bottlenecks is also increasingly important and requires reducing the ratio of memory to arithmetic operations. Moreover, when pairs only interact within a certain cut-off distance, good SIMD utilization can only be achieved by reordering input and output data, which quickly becomes a limiting factor. Here we present an algorithm for SIMD parallelization based on grouping a fixed number of particles, e.g. 2, 4, or 8, into spatial clusters. Calculating all interactions between particles in a pair of such clusters improves data reuse compared to the traditional scheme and results in a more efficient SIMD parallelization. Adjusting the cluster size allows the algorithm to map to SIMD units of various widths. This flexibility not only enables fast and efficient implementation on current CPUs and accelerator architectures like GPUs or Intel MIC, but it also makes the algorithm future-proof. We present the algorithm with an application to molecular dynamics simulations, where we can also make use of the effective buffering the method introduces.

A Parallel First-Order Linear Recurrence Solver.

DTIC Science & Technology

1986-09-01

1og2 -M)steps, but p M did not discuss any specific parallel implementation. Gajski [GAJ81] improved upon this result by performing the SIMD computation...solves a series of reduced recurrences of size p 2. However, when N = p 2, our approach reduces to that of I’- [GAJ81], except that Gajski presents the...existing SIMD algorithms to solve R<N,1>, the SIMD algo- rithm presented by Gajski [GAJ81] can be most efficiently mapped to a uni- directional ring

Parallel computing of physical maps--a comparative study in SIMD and MIMD parallelism.

PubMed

Bhandarkar, S M; Chirravuri, S; Arnold, J

1996-01-01

Ordering clones from a genomic library into physical maps of whole chromosomes presents a central computational problem in genetics. Chromosome reconstruction via clone ordering is usually isomorphic to the NP-complete Optimal Linear Arrangement problem. Parallel SIMD and MIMD algorithms for simulated annealing based on Markov chain distribution are proposed and applied to the problem of chromosome reconstruction via clone ordering. Perturbation methods and problem-specific annealing heuristics are proposed and described. The SIMD algorithms are implemented on a 2048 processor MasPar MP-2 system which is an SIMD 2-D toroidal mesh architecture whereas the MIMD algorithms are implemented on an 8 processor Intel iPSC/860 which is an MIMD hypercube architecture. A comparative analysis of the various SIMD and MIMD algorithms is presented in which the convergence, speedup, and scalability characteristics of the various algorithms are analyzed and discussed. On a fine-grained, massively parallel SIMD architecture with a low synchronization overhead such as the MasPar MP-2, a parallel simulated annealing algorithm based on multiple periodically interacting searches performs the best. For a coarse-grained MIMD architecture with high synchronization overhead such as the Intel iPSC/860, a parallel simulated annealing algorithm based on multiple independent searches yields the best results. In either case, distribution of clonal data across multiple processors is shown to exacerbate the tendency of the parallel simulated annealing algorithm to get trapped in a local optimum.

Pairwise Sequence Alignment Library

DOE Office of Scientific and Technical Information (OSTI.GOV)

Jeff Daily, PNNL

2015-05-20

Vector extensions, such as SSE, have been part of the x86 CPU since the 1990s, with applications in graphics, signal processing, and scientific applications. Although many algorithms and applications can naturally benefit from automatic vectorization techniques, there are still many that are difficult to vectorize due to their dependence on irregular data structures, dense branch operations, or data dependencies. Sequence alignment, one of the most widely used operations in bioinformatics workflows, has a computational footprint that features complex data dependencies. The trend of widening vector registers adversely affects the state-of-the-art sequence alignment algorithm based on striped data layouts. Therefore, amore » novel SIMD implementation of a parallel scan-based sequence alignment algorithm that can better exploit wider SIMD units was implemented as part of the Parallel Sequence Alignment Library (parasail). Parasail features: Reference implementations of all known vectorized sequence alignment approaches. Implementations of Smith Waterman (SW), semi-global (SG), and Needleman Wunsch (NW) sequence alignment algorithms. Implementations across all modern CPU instruction sets including AVX2 and KNC. Language interfaces for C/C++ and Python.« less

Highly parallel reconfigurable computer architecture for robotic computation having plural processor cells each having right and left ensembles of plural processors

NASA Technical Reports Server (NTRS)

Fijany, Amir (Inventor); Bejczy, Antal K. (Inventor)

1994-01-01

In a computer having a large number of single-instruction multiple data (SIMD) processors, each of the SIMD processors has two sets of three individual processor elements controlled by a master control unit and interconnected among a plurality of register file units where data is stored. The register files input and output data in synchronism with a minor cycle clock under control of two slave control units controlling the register file units connected to respective ones of the two sets of processor elements. Depending upon which ones of the register file units are enabled to store or transmit data during a particular minor clock cycle, the processor elements within an SIMD processor are connected in rings or in pipeline arrays, and may exchange data with the internal bus or with neighboring SIMD processors through interface units controlled by respective ones of the two slave control units.

SIMD Optimization of Linear Expressions for Programmable Graphics Hardware

PubMed Central

Bajaj, Chandrajit; Ihm, Insung; Min, Jungki; Oh, Jinsang

2009-01-01

The increased programmability of graphics hardware allows efficient graphical processing unit (GPU) implementations of a wide range of general computations on commodity PCs. An important factor in such implementations is how to fully exploit the SIMD computing capacities offered by modern graphics processors. Linear expressions in the form of ȳ = Ax̄ + b̄, where A is a matrix, and x̄, ȳ and b̄ are vectors, constitute one of the most basic operations in many scientific computations. In this paper, we propose a SIMD code optimization technique that enables efficient shader codes to be generated for evaluating linear expressions. It is shown that performance can be improved considerably by efficiently packing arithmetic operations into four-wide SIMD instructions through reordering of the operations in linear expressions. We demonstrate that the presented technique can be used effectively for programming both vertex and pixel shaders for a variety of mathematical applications, including integrating differential equations and solving a sparse linear system of equations using iterative methods. PMID:19946569

Bedside assistance in freehand ultrasonic diagnosis by real-time visual feedback of 3D scatter diagram of pulsatile tissue-motion

NASA Astrophysics Data System (ADS)

Fukuzawa, M.; Kawata, K.; Nakamori, N.; Kitsunezuka, Y.

2011-03-01

By real-time visual feedback of 3D scatter diagram of pulsatile tissue-motion, freehand ultrasonic diagnosis of neonatal ischemic diseases has been assisted at the bedside. The 2D ultrasonic movie was taken with a conventional ultrasonic apparatus (ATL HDI5000) and ultrasonic probes of 5-7 MHz with the compact tilt-sensor to measure the probe orientation. The real-time 3D visualization was realized by developing an extended version of the PC-based visualization system. The software was originally developed on the DirectX platform and optimized with the streaming SIMD extensions. The 3D scatter diagram of the latest pulsatile tissues has been continuously generated and visualized as projection image with the ultrasonic movie in the current section more than 15 fps. It revealed the 3D structure of pulsatile tissues such as middle and posterior cerebral arteries, Willis ring and cerebellar arteries, in which pediatricians have great interests in the blood flow because asphyxiated and/or low-birth-weight neonates have a high risk of ischemic diseases such as hypoxic-ischemic encephalopathy and periventricular leukomalacia. Since the pulsatile tissue-motion is due to local blood flow, it can be concluded that the system developed in this work is very useful to assist freehand ultrasonic diagnosis of ischemic diseases in the neonatal cranium.

CUDASW++ 3.0: accelerating Smith-Waterman protein database search by coupling CPU and GPU SIMD instructions.

PubMed

Liu, Yongchao; Wirawan, Adrianto; Schmidt, Bertil

2013-04-04

The maximal sensitivity for local alignments makes the Smith-Waterman algorithm a popular choice for protein sequence database search based on pairwise alignment. However, the algorithm is compute-intensive due to a quadratic time complexity. Corresponding runtimes are further compounded by the rapid growth of sequence databases. We present CUDASW++ 3.0, a fast Smith-Waterman protein database search algorithm, which couples CPU and GPU SIMD instructions and carries out concurrent CPU and GPU computations. For the CPU computation, this algorithm employs SSE-based vector execution units as accelerators. For the GPU computation, we have investigated for the first time a GPU SIMD parallelization, which employs CUDA PTX SIMD video instructions to gain more data parallelism beyond the SIMT execution model. Moreover, sequence alignment workloads are automatically distributed over CPUs and GPUs based on their respective compute capabilities. Evaluation on the Swiss-Prot database shows that CUDASW++ 3.0 gains a performance improvement over CUDASW++ 2.0 up to 2.9 and 3.2, with a maximum performance of 119.0 and 185.6 GCUPS, on a single-GPU GeForce GTX 680 and a dual-GPU GeForce GTX 690 graphics card, respectively. In addition, our algorithm has demonstrated significant speedups over other top-performing tools: SWIPE and BLAST+. CUDASW++ 3.0 is written in CUDA C++ and PTX assembly languages, targeting GPUs based on the Kepler architecture. This algorithm obtains significant speedups over its predecessor: CUDASW++ 2.0, by benefiting from the use of CPU and GPU SIMD instructions as well as the concurrent execution on CPUs and GPUs. The source code and the simulated data are available at http://cudasw.sourceforge.net.

Fault Tolerant Parallel Implementations of Iterative Algorithms for Optimal Control Problems

DTIC Science & Technology

1988-01-21

p/.V)] steps, but did not discuss any specific parallel implementation. Gajski [51 improved upon this result by performing the SIMD computation in...N = p2. our approach reduces to that of [51, except that Gajski presents the coefficient computation and partial solution phases as a single...8217>. the SIMD algo- rithm presented by Gajski [5] can be most efficiently mapped to a unidirec- tional ring network with broadcasting capability. Based

Kernel optimization for short-range molecular dynamics

NASA Astrophysics Data System (ADS)

Hu, Changjun; Wang, Xianmeng; Li, Jianjiang; He, Xinfu; Li, Shigang; Feng, Yangde; Yang, Shaofeng; Bai, He

2017-02-01

To optimize short-range force computations in Molecular Dynamics (MD) simulations, multi-threading and SIMD optimizations are presented in this paper. With respect to multi-threading optimization, a Partition-and-Separate-Calculation (PSC) method is designed to avoid write conflicts caused by using Newton's third law. Serial bottlenecks are eliminated with no additional memory usage. The method is implemented by using the OpenMP model. Furthermore, the PSC method is employed on Intel Xeon Phi coprocessors in both native and offload models. We also evaluate the performance of the PSC method under different thread affinities on the MIC architecture. In the SIMD execution, we explain the performance influence in the PSC method, considering the "if-clause" of the cutoff radius check. The experiment results show that our PSC method is relatively more efficient compared to some traditional methods. In double precision, our 256-bit SIMD implementation is about 3 times faster than the scalar version.

Introduction to a system for implementing neural net connections on SIMD architectures

NASA Technical Reports Server (NTRS)

Tomboulian, Sherryl

1988-01-01

Neural networks have attracted much interest recently, and using parallel architectures to simulate neural networks is a natural and necessary application. The SIMD model of parallel computation is chosen, because systems of this type can be built with large numbers of processing elements. However, such systems are not naturally suited to generalized communication. A method is proposed that allows an implementation of neural network connections on massively parallel SIMD architectures. The key to this system is an algorithm permitting the formation of arbitrary connections between the neurons. A feature is the ability to add new connections quickly. It also has error recovery ability and is robust over a variety of network topologies. Simulations of the general connection system, and its implementation on the Connection Machine, indicate that the time and space requirements are proportional to the product of the average number of connections per neuron and the diameter of the interconnection network.

Introduction to a system for implementing neural net connections on SIMD architectures

NASA Technical Reports Server (NTRS)

Tomboulian, Sherryl

1988-01-01

Neural networks have attracted much interest recently, and using parallel architectures to simulate neural networks is a natural and necessary application. The SIMD model of parallel computation is chosen, because systems of this type can be built with large numbers of processing elements. However, such systems are not naturally suited to generalized elements. A method is proposed that allows an implementation of neural network connections on massively parallel SIMD architectures. The key to this system is an algorithm permitting the formation of arbitrary connections between the neurons. A feature is the ability to add new connections quickly. It also has error recovery ability and is robust over a variety of network topologies. Simulations of the general connection system, and its implementation on the Connection Machine, indicate that the time and space requirements are proportional to the product of the average number of connections per neuron and the diameter of the interconnection network.

Effect of gender, age and deprivation on key performance indicators in a FOBT-based colorectal screening programme.

PubMed

Steele, R J C; Kostourou, I; McClements, P; Watling, C; Libby, G; Weller, D; Brewster, D H; Black, R; Carey, F A; Fraser, C

2010-01-01

To assess the effect of gender, age and deprivation on key performance indicators in a colorectal cancer screening programme. Between March 2000 and May 2006 a demonstration pilot of biennial guaiac faecal occult blood test (gFOBT) colorectal screening was carried out in North-East Scotland for all individuals aged 50-69 years. The relevant populations were subdivided, by gender, into four age groups and into five deprivation categories according to the Scottish Index of Multiple Deprivation (SIMD), and key performance indicators analysed within these groups. In all rounds, uptake of the gFOBT increased with age (P < 0.001), decreased with increasing deprivation in both genders (P < 0.001), and was consistently higher in women than in men in all age and all SIMD groups. In addition, increasing deprivation was negatively associated with uptake of colonoscopy in men with a positive gFOBT (P < 0.001) although this effect was not observed in women. Positivity rates increased with age (P < 0.001) and increasing deprivation (P < 0.001) in both genders in all rounds, although they were higher in men than in women for all age and SIMD categories. Cancer detection rates increased with age (P < 0.001), were higher in men than in women in all age and SIMD categories, but were not consistently related to deprivation. In both genders, the positive predictive value (PPV) for cancer increased with age (P < 0.001) and decreased with increasing deprivation (P < 0.001) in all rounds and was consistently higher in men than in women in all age and SIMD categories. In this population-based colorectal screening programme gender, age, and deprivation had marked effects on key performance indicators, and this has implications both for the evaluation of screening programmes and for strategies designed to reduce inequalities.

Academic Self-Efficacy Partially Mediates the Relationship between Scottish Index of Multiple Deprivation and Composite Attainment Score.

PubMed

Perry, John L; Dempster, Martin; McKay, Michael T

2017-01-01

A developing literature continues to testify to the relationship between higher socio-economic status (SES) and better academic attainment. However, the literature is complex in terms of the variety of SES and attainment indicators used. Against the backdrop of a Scottish Government initiative to close the attainment gap between higher and lower SES children, the present study examined the relationship between individual-level Scottish Index of Multiple Deprivation (SIMD) and National Lower Tariff Score in school children in the West of Scotland. Results showed a practically significant relationship between SIMD and Tariff Score. This relationship was partially mediated by higher academic self-efficacy, so that higher belief in academic competency partially mediated the SIMD-Tariff Score relationship. Further, this partial mediation was robust to the influence of gender, sensation seeking, level of school attendance and past month frequency of Heavy Episodic Drinking. It is suggested that increasing attendance and perceived academic competence are viable ways (among others) of attempting to close the attainment gap.

Academic Self-Efficacy Partially Mediates the Relationship between Scottish Index of Multiple Deprivation and Composite Attainment Score

PubMed Central

Perry, John L.; Dempster, Martin; McKay, Michael T.

2017-01-01

A developing literature continues to testify to the relationship between higher socio-economic status (SES) and better academic attainment. However, the literature is complex in terms of the variety of SES and attainment indicators used. Against the backdrop of a Scottish Government initiative to close the attainment gap between higher and lower SES children, the present study examined the relationship between individual-level Scottish Index of Multiple Deprivation (SIMD) and National Lower Tariff Score in school children in the West of Scotland. Results showed a practically significant relationship between SIMD and Tariff Score. This relationship was partially mediated by higher academic self-efficacy, so that higher belief in academic competency partially mediated the SIMD-Tariff Score relationship. Further, this partial mediation was robust to the influence of gender, sensation seeking, level of school attendance and past month frequency of Heavy Episodic Drinking. It is suggested that increasing attendance and perceived academic competence are viable ways (among others) of attempting to close the attainment gap. PMID:29163281

A high performance data parallel tensor contraction framework: Application to coupled electro-mechanics

NASA Astrophysics Data System (ADS)

Poya, Roman; Gil, Antonio J.; Ortigosa, Rogelio

2017-07-01

The paper presents aspects of implementation of a new high performance tensor contraction framework for the numerical analysis of coupled and multi-physics problems on streaming architectures. In addition to explicit SIMD instructions and smart expression templates, the framework introduces domain specific constructs for the tensor cross product and its associated algebra recently rediscovered by Bonet et al. (2015, 2016) in the context of solid mechanics. The two key ingredients of the presented expression template engine are as follows. First, the capability to mathematically transform complex chains of operations to simpler equivalent expressions, while potentially avoiding routes with higher levels of computational complexity and, second, to perform a compile time depth-first or breadth-first search to find the optimal contraction indices of a large tensor network in order to minimise the number of floating point operations. For optimisations of tensor contraction such as loop transformation, loop fusion and data locality optimisations, the framework relies heavily on compile time technologies rather than source-to-source translation or JIT techniques. Every aspect of the framework is examined through relevant performance benchmarks, including the impact of data parallelism on the performance of isomorphic and nonisomorphic tensor products, the FLOP and memory I/O optimality in the evaluation of tensor networks, the compilation cost and memory footprint of the framework and the performance of tensor cross product kernels. The framework is then applied to finite element analysis of coupled electro-mechanical problems to assess the speed-ups achieved in kernel-based numerical integration of complex electroelastic energy functionals. In this context, domain-aware expression templates combined with SIMD instructions are shown to provide a significant speed-up over the classical low-level style programming techniques.

Benchmarking and performance analysis of the CM-2. [SIMD computer

NASA Technical Reports Server (NTRS)

Myers, David W.; Adams, George B., II

1988-01-01

A suite of benchmarking routines testing communication, basic arithmetic operations, and selected kernel algorithms written in LISP and PARIS was developed for the CM-2. Experiment runs are automated via a software framework that sequences individual tests, allowing for unattended overnight operation. Multiple measurements are made and treated statistically to generate well-characterized results from the noisy values given by cm:time. The results obtained provide a comparison with similar, but less extensive, testing done on a CM-1. Tests were chosen to aid the algorithmist in constructing fast, efficient, and correct code on the CM-2, as well as gain insight into what performance criteria are needed when evaluating parallel processing machines.

Unstructured grids on SIMD torus machines

NASA Technical Reports Server (NTRS)

Bjorstad, Petter E.; Schreiber, Robert

1994-01-01

Unstructured grids lead to unstructured communication on distributed memory parallel computers, a problem that has been considered difficult. Here, we consider adaptive, offline communication routing for a SIMD processor grid. Our approach is empirical. We use large data sets drawn from supercomputing applications instead of an analytic model of communication load. The chief contribution of this paper is an experimental demonstration of the effectiveness of certain routing heuristics. Our routing algorithm is adaptive, nonminimal, and is generally designed to exploit locality. We have a parallel implementation of the router, and we report on its performance.

Progressive Vector Quantization on a massively parallel SIMD machine with application to multispectral image data

NASA Technical Reports Server (NTRS)

Manohar, Mareboyana; Tilton, James C.

1994-01-01

A progressive vector quantization (VQ) compression approach is discussed which decomposes image data into a number of levels using full search VQ. The final level is losslessly compressed, enabling lossless reconstruction. The computational difficulties are addressed by implementation on a massively parallel SIMD machine. We demonstrate progressive VQ on multispectral imagery obtained from the Advanced Very High Resolution Radiometer instrument and other Earth observation image data, and investigate the trade-offs in selecting the number of decomposition levels and codebook training method.

A comparison of the Scottish Index of Multiple Deprivation (SIMD) 2004 with the 2009 + 1 SIMD: does choice of measure affect the interpretation of inequality in mortality?

PubMed

Ralston, Kevin; Dundas, Ruth; Leyland, Alastair H

2014-07-08

There is a growing international literature assessing inequalities in health and mortality by area based measures. However, there are few works comparing measures available to inform research design. The analysis here seeks to begin to address this issue by assessing whether there are important differences in the relationship between deprivation and inequalities in mortality when measures that have been constructed at different time points are compared. We contrast whether the interpretation of inequalities in all-cause mortality between the years 2008-10 changes in Scotland if we apply the earliest (2004) and the 2009 + 1 releases of the Scottish Index of Multiple Deprivation (SIMD) to make this comparison. The 2004 release is based on data from 2001/2 and the 2009 + 1 release is based on data from 2008/9. The slope index of inequality (SII) and 1:10 ratio are used to summarise inequalities standardised by age/sex using population and mortality records. The 1:10 ratio suggests some differences in the magnitude of inequalities measured using SIMD at different time points. However, the SII shows much closer correspondence. Overall the findings show that substantive conclusions in relation to inequalities in all-cause mortality are little changed by the updated measure. This information is beneficial to researchers as the most recent measures are not always available. This adds to the body of literature showing stability in inequalities in health and mortality by geographical deprivation over time.

An implementation of a tree code on a SIMD, parallel computer

NASA Technical Reports Server (NTRS)

Olson, Kevin M.; Dorband, John E.

1994-01-01

We describe a fast tree algorithm for gravitational N-body simulation on SIMD parallel computers. The tree construction uses fast, parallel sorts. The sorted lists are recursively divided along their x, y and z coordinates. This data structure is a completely balanced tree (i.e., each particle is paired with exactly one other particle) and maintains good spatial locality. An implementation of this tree-building algorithm on a 16k processor Maspar MP-1 performs well and constitutes only a small fraction (approximately 15%) of the entire cycle of finding the accelerations. Each node in the tree is treated as a monopole. The tree search and the summation of accelerations also perform well. During the tree search, node data that is needed from another processor is simply fetched. Roughly 55% of the tree search time is spent in communications between processors. We apply the code to two problems of astrophysical interest. The first is a simulation of the close passage of two gravitationally, interacting, disk galaxies using 65,636 particles. We also simulate the formation of structure in an expanding, model universe using 1,048,576 particles. Our code attains speeds comparable to one head of a Cray Y-MP, so single instruction, multiple data (SIMD) type computers can be used for these simulations. The cost/performance ratio for SIMD machines like the Maspar MP-1 make them an extremely attractive alternative to either vector processors or large multiple instruction, multiple data (MIMD) type parallel computers. With further optimizations (e.g., more careful load balancing), speeds in excess of today's vector processing computers should be possible.

FPGA-accelerated adaptive optics wavefront control

NASA Astrophysics Data System (ADS)

Mauch, S.; Reger, J.; Reinlein, C.; Appelfelder, M.; Goy, M.; Beckert, E.; Tünnermann, A.

2014-03-01

The speed of real-time adaptive optical systems is primarily restricted by the data processing hardware and computational aspects. Furthermore, the application of mirror layouts with increasing numbers of actuators reduces the bandwidth (speed) of the system and, thus, the number of applicable control algorithms. This burden turns out a key-impediment for deformable mirrors with continuous mirror surface and highly coupled actuator influence functions. In this regard, specialized hardware is necessary for high performance real-time control applications. Our approach to overcome this challenge is an adaptive optics system based on a Shack-Hartmann wavefront sensor (SHWFS) with a CameraLink interface. The data processing is based on a high performance Intel Core i7 Quadcore hard real-time Linux system. Employing a Xilinx Kintex-7 FPGA, an own developed PCie card is outlined in order to accelerate the analysis of a Shack-Hartmann Wavefront Sensor. A recently developed real-time capable spot detection algorithm evaluates the wavefront. The main features of the presented system are the reduction of latency and the acceleration of computation For example, matrix multiplications which in general are of complexity O(n3 are accelerated by using the DSP48 slices of the field-programmable gate array (FPGA) as well as a novel hardware implementation of the SHWFS algorithm. Further benefits are the Streaming SIMD Extensions (SSE) which intensively use the parallelization capability of the processor for further reducing the latency and increasing the bandwidth of the closed-loop. Due to this approach, up to 64 actuators of a deformable mirror can be handled and controlled without noticeable restriction from computational burdens.

Efficient irregular wavefront propagation algorithms on Intel® Xeon Phi™

PubMed Central

Gomes, Jeremias M.; Teodoro, George; de Melo, Alba; Kong, Jun; Kurc, Tahsin; Saltz, Joel H.

2016-01-01

We investigate the execution of the Irregular Wavefront Propagation Pattern (IWPP), a fundamental computing structure used in several image analysis operations, on the Intel® Xeon Phi™ co-processor. An efficient implementation of IWPP on the Xeon Phi is a challenging problem because of IWPP’s irregularity and the use of atomic instructions in the original IWPP algorithm to resolve race conditions. On the Xeon Phi, the use of SIMD and vectorization instructions is critical to attain high performance. However, SIMD atomic instructions are not supported. Therefore, we propose a new IWPP algorithm that can take advantage of the supported SIMD instruction set. We also evaluate an alternate storage container (priority queue) to track active elements in the wavefront in an effort to improve the parallel algorithm efficiency. The new IWPP algorithm is evaluated with Morphological Reconstruction and Imfill operations as use cases. Our results show performance improvements of up to 5.63× on top of the original IWPP due to vectorization. Moreover, the new IWPP achieves speedups of 45.7× and 1.62×, respectively, as compared to efficient CPU and GPU implementations. PMID:27298591

Efficient irregular wavefront propagation algorithms on Intel® Xeon Phi™.

PubMed

Gomes, Jeremias M; Teodoro, George; de Melo, Alba; Kong, Jun; Kurc, Tahsin; Saltz, Joel H

2015-10-01

We investigate the execution of the Irregular Wavefront Propagation Pattern (IWPP), a fundamental computing structure used in several image analysis operations, on the Intel ® Xeon Phi ™ co-processor. An efficient implementation of IWPP on the Xeon Phi is a challenging problem because of IWPP's irregularity and the use of atomic instructions in the original IWPP algorithm to resolve race conditions. On the Xeon Phi, the use of SIMD and vectorization instructions is critical to attain high performance. However, SIMD atomic instructions are not supported. Therefore, we propose a new IWPP algorithm that can take advantage of the supported SIMD instruction set. We also evaluate an alternate storage container (priority queue) to track active elements in the wavefront in an effort to improve the parallel algorithm efficiency. The new IWPP algorithm is evaluated with Morphological Reconstruction and Imfill operations as use cases. Our results show performance improvements of up to 5.63 × on top of the original IWPP due to vectorization. Moreover, the new IWPP achieves speedups of 45.7 × and 1.62 × , respectively, as compared to efficient CPU and GPU implementations.

An efficient and portable SIMD algorithm for charge/current deposition in Particle-In-Cell codes

NASA Astrophysics Data System (ADS)

Vincenti, H.; Lobet, M.; Lehe, R.; Sasanka, R.; Vay, J.-L.

2017-01-01

In current computer architectures, data movement (from die to network) is by far the most energy consuming part of an algorithm (≈ 20 pJ/word on-die to ≈10,000 pJ/word on the network). To increase memory locality at the hardware level and reduce energy consumption related to data movement, future exascale computers tend to use many-core processors on each compute nodes that will have a reduced clock speed to allow for efficient cooling. To compensate for frequency decrease, machine vendors are making use of long SIMD instruction registers that are able to process multiple data with one arithmetic operator in one clock cycle. SIMD register length is expected to double every four years. As a consequence, Particle-In-Cell (PIC) codes will have to achieve good vectorization to fully take advantage of these upcoming architectures. In this paper, we present a new algorithm that allows for efficient and portable SIMD vectorization of current/charge deposition routines that are, along with the field gathering routines, among the most time consuming parts of the PIC algorithm. Our new algorithm uses a particular data structure that takes into account memory alignment constraints and avoids gather/scatter instructions that can significantly affect vectorization performances on current CPUs. The new algorithm was successfully implemented in the 3D skeleton PIC code PICSAR and tested on Haswell Xeon processors (AVX2-256 bits wide data registers). Results show a factor of × 2 to × 2.5 speed-up in double precision for particle shape factor of orders 1- 3. The new algorithm can be applied as is on future KNL (Knights Landing) architectures that will include AVX-512 instruction sets with 512 bits register lengths (8 doubles/16 singles).

Interaction sorting method for molecular dynamics on multi-core SIMD CPU architecture.

PubMed

Matvienko, Sergey; Alemasov, Nikolay; Fomin, Eduard

2015-02-01

Molecular dynamics (MD) is widely used in computational biology for studying binding mechanisms of molecules, molecular transport, conformational transitions, protein folding, etc. The method is computationally expensive; thus, the demand for the development of novel, much more efficient algorithms is still high. Therefore, the new algorithm designed in 2007 and called interaction sorting (IS) clearly attracted interest, as it outperformed the most efficient MD algorithms. In this work, a new IS modification is proposed which allows the algorithm to utilize SIMD processor instructions. This paper shows that the improvement provides an additional gain in performance, 9% to 45% in comparison to the original IS method.

Floating point only SIMD instruction set architecture including compare, select, Boolean, and alignment operations

DOEpatents

Gschwind, Michael K [Chappaqua, NY

2011-03-01

Mechanisms for implementing a floating point only single instruction multiple data instruction set architecture are provided. A processor is provided that comprises an issue unit, an execution unit coupled to the issue unit, and a vector register file coupled to the execution unit. The execution unit has logic that implements a floating point (FP) only single instruction multiple data (SIMD) instruction set architecture (ISA). The floating point vector registers of the vector register file store both scalar and floating point values as vectors having a plurality of vector elements. The processor may be part of a data processing system.

Applications of Parallel Computation in Micro-Mechanics and Finite Element Method

NASA Technical Reports Server (NTRS)

Tan, Hui-Qian

1996-01-01

This project discusses the application of parallel computations related with respect to material analyses. Briefly speaking, we analyze some kind of material by elements computations. We call an element a cell here. A cell is divided into a number of subelements called subcells and all subcells in a cell have the identical structure. The detailed structure will be given later in this paper. It is obvious that the problem is "well-structured". SIMD machine would be a better choice. In this paper we try to look into the potentials of SIMD machine in dealing with finite element computation by developing appropriate algorithms on MasPar, a SIMD parallel machine. In section 2, the architecture of MasPar will be discussed. A brief review of the parallel programming language MPL also is given in that section. In section 3, some general parallel algorithms which might be useful to the project will be proposed. And, combining with the algorithms, some features of MPL will be discussed in more detail. In section 4, the computational structure of cell/subcell model will be given. The idea of designing the parallel algorithm for the model will be demonstrated. Finally in section 5, a summary will be given.

Rapid prototyping and evaluation of programmable SIMD SDR processors in LISA

NASA Astrophysics Data System (ADS)

Chen, Ting; Liu, Hengzhu; Zhang, Botao; Liu, Dongpei

2013-03-01

With the development of international wireless communication standards, there is an increase in computational requirement for baseband signal processors. Time-to-market pressure makes it impossible to completely redesign new processors for the evolving standards. Due to its high flexibility and low power, software defined radio (SDR) digital signal processors have been proposed as promising technology to replace traditional ASIC and FPGA fashions. In addition, there are large numbers of parallel data processed in computation-intensive functions, which fosters the development of single instruction multiple data (SIMD) architecture in SDR platform. So a new way must be found to prototype the SDR processors efficiently. In this paper we present a bit-and-cycle accurate model of programmable SIMD SDR processors in a machine description language LISA. LISA is a language for instruction set architecture which can gain rapid model at architectural level. In order to evaluate the availability of our proposed processor, three common baseband functions, FFT, FIR digital filter and matrix multiplication have been mapped on the SDR platform. Analytical results showed that the SDR processor achieved the maximum of 47.1% performance boost relative to the opponent processor.

Performance analysis of the FDTD method applied to holographic volume gratings: Multi-core CPU versus GPU computing

NASA Astrophysics Data System (ADS)

Francés, J.; Bleda, S.; Neipp, C.; Márquez, A.; Pascual, I.; Beléndez, A.

2013-03-01

The finite-difference time-domain method (FDTD) allows electromagnetic field distribution analysis as a function of time and space. The method is applied to analyze holographic volume gratings (HVGs) for the near-field distribution at optical wavelengths. Usually, this application requires the simulation of wide areas, which implies more memory and time processing. In this work, we propose a specific implementation of the FDTD method including several add-ons for a precise simulation of optical diffractive elements. Values in the near-field region are computed considering the illumination of the grating by means of a plane wave for different angles of incidence and including absorbing boundaries as well. We compare the results obtained by FDTD with those obtained using a matrix method (MM) applied to diffraction gratings. In addition, we have developed two optimized versions of the algorithm, for both CPU and GPU, in order to analyze the improvement of using the new NVIDIA Fermi GPU architecture versus highly tuned multi-core CPU as a function of the size simulation. In particular, the optimized CPU implementation takes advantage of the arithmetic and data transfer streaming SIMD (single instruction multiple data) extensions (SSE) included explicitly in the code and also of multi-threading by means of OpenMP directives. A good agreement between the results obtained using both FDTD and MM methods is obtained, thus validating our methodology. Moreover, the performance of the GPU is compared to the SSE+OpenMP CPU implementation, and it is quantitatively determined that a highly optimized CPU program can be competitive for a wider range of simulation sizes, whereas GPU computing becomes more powerful for large-scale simulations.

BEAGLE: an application programming interface and high-performance computing library for statistical phylogenetics.

PubMed

Ayres, Daniel L; Darling, Aaron; Zwickl, Derrick J; Beerli, Peter; Holder, Mark T; Lewis, Paul O; Huelsenbeck, John P; Ronquist, Fredrik; Swofford, David L; Cummings, Michael P; Rambaut, Andrew; Suchard, Marc A

2012-01-01

Phylogenetic inference is fundamental to our understanding of most aspects of the origin and evolution of life, and in recent years, there has been a concentration of interest in statistical approaches such as Bayesian inference and maximum likelihood estimation. Yet, for large data sets and realistic or interesting models of evolution, these approaches remain computationally demanding. High-throughput sequencing can yield data for thousands of taxa, but scaling to such problems using serial computing often necessitates the use of nonstatistical or approximate approaches. The recent emergence of graphics processing units (GPUs) provides an opportunity to leverage their excellent floating-point computational performance to accelerate statistical phylogenetic inference. A specialized library for phylogenetic calculation would allow existing software packages to make more effective use of available computer hardware, including GPUs. Adoption of a common library would also make it easier for other emerging computing architectures, such as field programmable gate arrays, to be used in the future. We present BEAGLE, an application programming interface (API) and library for high-performance statistical phylogenetic inference. The API provides a uniform interface for performing phylogenetic likelihood calculations on a variety of compute hardware platforms. The library includes a set of efficient implementations and can currently exploit hardware including GPUs using NVIDIA CUDA, central processing units (CPUs) with Streaming SIMD Extensions and related processor supplementary instruction sets, and multicore CPUs via OpenMP. To demonstrate the advantages of a common API, we have incorporated the library into several popular phylogenetic software packages. The BEAGLE library is free open source software licensed under the Lesser GPL and available from http://beagle-lib.googlecode.com. An example client program is available as public domain software.

BEAGLE: An Application Programming Interface and High-Performance Computing Library for Statistical Phylogenetics

PubMed Central

Ayres, Daniel L.; Darling, Aaron; Zwickl, Derrick J.; Beerli, Peter; Holder, Mark T.; Lewis, Paul O.; Huelsenbeck, John P.; Ronquist, Fredrik; Swofford, David L.; Cummings, Michael P.; Rambaut, Andrew; Suchard, Marc A.

2012-01-01

Abstract Phylogenetic inference is fundamental to our understanding of most aspects of the origin and evolution of life, and in recent years, there has been a concentration of interest in statistical approaches such as Bayesian inference and maximum likelihood estimation. Yet, for large data sets and realistic or interesting models of evolution, these approaches remain computationally demanding. High-throughput sequencing can yield data for thousands of taxa, but scaling to such problems using serial computing often necessitates the use of nonstatistical or approximate approaches. The recent emergence of graphics processing units (GPUs) provides an opportunity to leverage their excellent floating-point computational performance to accelerate statistical phylogenetic inference. A specialized library for phylogenetic calculation would allow existing software packages to make more effective use of available computer hardware, including GPUs. Adoption of a common library would also make it easier for other emerging computing architectures, such as field programmable gate arrays, to be used in the future. We present BEAGLE, an application programming interface (API) and library for high-performance statistical phylogenetic inference. The API provides a uniform interface for performing phylogenetic likelihood calculations on a variety of compute hardware platforms. The library includes a set of efficient implementations and can currently exploit hardware including GPUs using NVIDIA CUDA, central processing units (CPUs) with Streaming SIMD Extensions and related processor supplementary instruction sets, and multicore CPUs via OpenMP. To demonstrate the advantages of a common API, we have incorporated the library into several popular phylogenetic software packages. The BEAGLE library is free open source software licensed under the Lesser GPL and available from http://beagle-lib.googlecode.com. An example client program is available as public domain software. PMID:21963610

A hybrid algorithm for parallel molecular dynamics simulations

NASA Astrophysics Data System (ADS)

Mangiardi, Chris M.; Meyer, R.

2017-10-01

This article describes algorithms for the hybrid parallelization and SIMD vectorization of molecular dynamics simulations with short-range forces. The parallelization method combines domain decomposition with a thread-based parallelization approach. The goal of the work is to enable efficient simulations of very large (tens of millions of atoms) and inhomogeneous systems on many-core processors with hundreds or thousands of cores and SIMD units with large vector sizes. In order to test the efficiency of the method, simulations of a variety of configurations with up to 74 million atoms have been performed. Results are shown that were obtained on multi-core systems with Sandy Bridge and Haswell processors as well as systems with Xeon Phi many-core processors.

An efficient three-dimensional Poisson solver for SIMD high-performance-computing architectures

NASA Technical Reports Server (NTRS)

Cohl, H.

1994-01-01

We present an algorithm that solves the three-dimensional Poisson equation on a cylindrical grid. The technique uses a finite-difference scheme with operator splitting. This splitting maps the banded structure of the operator matrix into a two-dimensional set of tridiagonal matrices, which are then solved in parallel. Our algorithm couples FFT techniques with the well-known ADI (Alternating Direction Implicit) method for solving Elliptic PDE's, and the implementation is extremely well suited for a massively parallel environment like the SIMD architecture of the MasPar MP-1. Due to the highly recursive nature of our problem, we believe that our method is highly efficient, as it avoids excessive interprocessor communication.

Vectorization for Molecular Dynamics on Intel Xeon Phi Corpocessors

NASA Astrophysics Data System (ADS)

Yi, Hongsuk

2014-03-01

Many modern processors are capable of exploiting data-level parallelism through the use of single instruction multiple data (SIMD) execution. The new Intel Xeon Phi coprocessor supports 512 bit vector registers for the high performance computing. In this paper, we have developed a hierarchical parallelization scheme for accelerated molecular dynamics simulations with the Terfoff potentials for covalent bond solid crystals on Intel Xeon Phi coprocessor systems. The scheme exploits multi-level parallelism computing. We combine thread-level parallelism using a tightly coupled thread-level and task-level parallelism with 512-bit vector register. The simulation results show that the parallel performance of SIMD implementations on Xeon Phi is apparently superior to their x86 CPU architecture.

Application of multigrid methods to the solution of liquid crystal equations on a SIMD computer

NASA Technical Reports Server (NTRS)

Farrell, Paul A.; Ruttan, Arden; Zeller, Reinhardt R.

1993-01-01

We will describe a finite difference code for computing the equilibrium configurations of the order-parameter tensor field for nematic liquid crystals in rectangular regions by minimization of the Landau-de Gennes Free Energy functional. The implementation of the free energy functional described here includes magnetic fields, quadratic gradient terms, and scalar bulk terms through the fourth order. Boundary conditions include the effects of strong surface anchoring. The target architectures for our implementation are SIMD machines, with interconnection networks which can be configured as 2 or 3 dimensional grids, such as the Wavetracer DTC. We also discuss the relative efficiency of a number of iterative methods for the solution of the linear systems arising from this discretization on such architectures.

A graphics-card implementation of Monte-Carlo simulations for cosmic-ray transport

NASA Astrophysics Data System (ADS)

Tautz, R. C.

2016-05-01

A graphics card implementation of a test-particle simulation code is presented that is based on the CUDA extension of the C/C++ programming language. The original CPU version has been developed for the calculation of cosmic-ray diffusion coefficients in artificial Kolmogorov-type turbulence. In the new implementation, the magnetic turbulence generation, which is the most time-consuming part, is separated from the particle transport and is performed on a graphics card. In this article, the modification of the basic approach of integrating test particle trajectories to employ the SIMD (single instruction, multiple data) model is presented and verified. The efficiency of the new code is tested and several language-specific accelerating factors are discussed. For the example of isotropic magnetostatic turbulence, sample results are shown and a comparison to the results of the CPU implementation is performed.

Accelerated Adaptive MGS Phase Retrieval

NASA Technical Reports Server (NTRS)

Lam, Raymond K.; Ohara, Catherine M.; Green, Joseph J.; Bikkannavar, Siddarayappa A.; Basinger, Scott A.; Redding, David C.; Shi, Fang

2011-01-01

The Modified Gerchberg-Saxton (MGS) algorithm is an image-based wavefront-sensing method that can turn any science instrument focal plane into a wavefront sensor. MGS characterizes optical systems by estimating the wavefront errors in the exit pupil using only intensity images of a star or other point source of light. This innovative implementation of MGS significantly accelerates the MGS phase retrieval algorithm by using stream-processing hardware on conventional graphics cards. Stream processing is a relatively new, yet powerful, paradigm to allow parallel processing of certain applications that apply single instructions to multiple data (SIMD). These stream processors are designed specifically to support large-scale parallel computing on a single graphics chip. Computationally intensive algorithms, such as the Fast Fourier Transform (FFT), are particularly well suited for this computing environment. This high-speed version of MGS exploits commercially available hardware to accomplish the same objective in a fraction of the original time. The exploit involves performing matrix calculations in nVidia graphic cards. The graphical processor unit (GPU) is hardware that is specialized for computationally intensive, highly parallel computation. From the software perspective, a parallel programming model is used, called CUDA, to transparently scale multicore parallelism in hardware. This technology gives computationally intensive applications access to the processing power of the nVidia GPUs through a C/C++ programming interface. The AAMGS (Accelerated Adaptive MGS) software takes advantage of these advanced technologies, to accelerate the optical phase error characterization. With a single PC that contains four nVidia GTX-280 graphic cards, the new implementation can process four images simultaneously to produce a JWST (James Webb Space Telescope) wavefront measurement 60 times faster than the previous code.

Indirect addressing and load balancing for faster solution to Mandelbrot Set on SIMD architectures

NASA Technical Reports Server (NTRS)

Tomboulian, Sherryl

1989-01-01

SIMD computers with local indirect addressing allow programs to have queues and buffers, making certain kinds of problems much more efficient. Examined here are a class of problems characterized by computations on data points where the computation is identical, but the convergence rate is data dependent. Normally, in this situation, the algorithm time is governed by the maximum number of iterations required by each point. Using indirect addressing allows a processor to proceed to the next data point when it is done, reducing the overall number of iterations required to approach the mean convergence rate when a sufficiently large problem set is solved. Load balancing techniques can be applied for additional performance improvement. Simulations of this technique applied to solving Mandelbrot Sets indicate significant performance gains.

2D-RBUC for efficient parallel compression of residuals

NASA Astrophysics Data System (ADS)

Đurđević, Đorđe M.; Tartalja, Igor I.

2018-02-01

In this paper, we present a method for lossless compression of residuals with an efficient SIMD parallel decompression. The residuals originate from lossy or near lossless compression of height fields, which are commonly used to represent models of terrains. The algorithm is founded on the existing RBUC method for compression of non-uniform data sources. We have adapted the method to capture 2D spatial locality of height fields, and developed the data decompression algorithm for modern GPU architectures already present even in home computers. In combination with the point-level SIMD-parallel lossless/lossy high field compression method HFPaC, characterized by fast progressive decompression and seamlessly reconstructed surface, the newly proposed method trades off small efficiency degradation for a non negligible compression ratio (measured up to 91%) benefit.

A scalable SIMD digital signal processor for high-quality multifunctional printer systems

NASA Astrophysics Data System (ADS)

Kang, Hyeong-Ju; Choi, Yongwoo; Kim, Kimo; Park, In-Cheol; Kim, Jung-Wook; Lee, Eul-Hwan; Gahang, Goo-Soo

2005-01-01

This paper describes a high-performance scalable SIMD digital signal processor (DSP) developed for multifunctional printer systems. The DSP supports a variable number of datapaths to cover a wide range of performance and maintain a RISC-like pipeline structure. Many special instructions suitable for image processing algorithms are included in the DSP. Quad/dual instructions are introduced for 8-bit or 16-bit data, and bit-field extraction/insertion instructions are supported to process various data types. Conditional instructions are supported to deal with complex relative conditions efficiently. In addition, an intelligent DMA block is integrated to align data in the course of data reading. Experimental results show that the proposed DSP outperforms a high-end printer-system DSP by at least two times.

Persistent Influences of the 2002 Hayman Fire on Stream Nitrate and Dissolved Organic Carbon

NASA Astrophysics Data System (ADS)

Rhoades, C.; Pierson, D. N.; Fegel, T. S., II; Chow, A. T.; Covino, T. P.

2016-12-01

Large, high severity wildfires alter the physical and biological conditions that determine how watersheds retain and release nutrients and regulate stream water quality. For five years after the 2002 Hayman Fire burned in Colorado conifer forests, stream nitrate concentrations and export increased steadily in watersheds with extensive high-severity burning. Stream temperature and turbidity also increased in relation to the extent of high-severity burning and remained elevated above background levels throughout the initial five year post-fire period. Our recent sampling documents that 14 years after the Hayman Fire stream nitrate remains an order of magnitude higher in extensively-burned (35-90%) compared to unburned watersheds (0.2 vs 2.8 mg L-1). Nitrate represents 83% of the total dissolved N in extensively-burned watersheds compared to 29% in unburned watersheds. In contrast, dissolved organic carbon (DOC), was highest in watersheds that burned to a moderate extent (10-20%) and lowest in those with extensive burning. Catchments with a moderate extent burned had DOC concentrations 2.5 and 1.7 times more than those with extensive burning and unburned catchments, respectively. Peak concentrations of DOC and nitrate track the rising limb of the streamflow hydrograph and reach a maximum in May, but patterns among burn extent categories were seasonally consistent. Current riparian conditions are linked to stream nitrate in burned watersheds. For example, stream nitrate increases proportionally to the extent of riparian zones with low shrub cover (R2 = 0.76). We found signs of watershed recovery compared to the initial post-fire period; stream temperature and turbidity remained elevated in extensively burned catchments, but increases were only significant during the spring season. The persistent stream nitrate concentrations as well as the relation between riparian cover and post-fire stream nitrate may help prioritize restoration planting efforts and mitigate chronic, elevated nitrate export from burned watersheds.

The MasPar MP-1 As a Computer Arithmetic Laboratory

PubMed Central

Anuta, Michael A.; Lozier, Daniel W.; Turner, Peter R.

1996-01-01

This paper is a blueprint for the use of a massively parallel SIMD computer architecture for the simulation of various forms of computer arithmetic. The particular system used is a DEC/MasPar MP-1 with 4096 processors in a square array. This architecture has many advantages for such simulations due largely to the simplicity of the individual processors. Arithmetic operations can be spread across the processor array to simulate a hardware chip. Alternatively they may be performed on individual processors to allow simulation of a massively parallel implementation of the arithmetic. Compromises between these extremes permit speed-area tradeoffs to be examined. The paper includes a description of the architecture and its features. It then summarizes some of the arithmetic systems which have been, or are to be, implemented. The implementation of the level-index and symmetric level-index, LI and SLI, systems is described in some detail. An extensive bibliography is included. PMID:27805123

The relationship between area deprivation and contact with community intellectual disability psychiatry.

PubMed

Nicholson, L; Hotchin, H

2015-05-01

People with intellectual disabilities (ID) have high rates of psychiatric illness and are known to live in more deprived areas than the general population. This study investigated the relationship between area deprivation and contact with ID psychiatry. Psychiatric case notes and electronic records were used to identify all patients who had face-to-face contact with community ID psychiatric services over 1 year in the North East Community Health Partnership of Greater Glasgow and Clyde (estimated population 177,867). The Scottish Index of Multiple Deprivation (SIMD) were determined for the patient sample and for the general population living in the same area. Between 1 June 2012 and 1 June 2013, 184 patients were seen by ID psychiatry over a total of 553 contacts, with valid SIMD data for 179 patients and 543 contacts. Fifty-two per cent of patients (n = 93) lived in the most deprived SIMD decile, and 90.5% (n = 152) in the lowest 5 deciles. Compared with the general population, there were significantly more patients than expected living in the most deprived decile (Fisher's Exact test, P = 0.009) and in the most deprived 5 deciles (Fisher's Exact test, P = 0.001). The median number of contacts was 2 (interquartile range = 1-3). There was no significant association between the number of contacts and SIMD decile. Forty-eight point one per cent (n = 261) of all contacts were with patients living in the most deprived decile and 88.6% (n = 481) in the most deprived 5 deciles. This was significantly more than expected compared with general population data (Fisher's Exact test, P = 0.008 and Fisher's Exact test, P ≤ 0.001). In the area under study, contact with ID psychiatry was greater in more deprived areas. Given the high psychiatric morbidity of people with ID, if services do not adjust for deprivation, this may lead to further discrimination in an already disadvantaged population. © 2014 MENCAP and International Association of the Scientific Study of Intellectual and Developmental Disabilities and John Wiley & Sons Ltd.

Shift-connected SIMD array architectures for digital optical computing systems, with algorithms for numerical transforms and partial differential equations

NASA Astrophysics Data System (ADS)

Drabik, Timothy J.; Lee, Sing H.

1986-11-01

The intrinsic parallelism characteristics of easily realizable optical SIMD arrays prompt their present consideration in the implementation of highly structured algorithms for the numerical solution of multidimensional partial differential equations and the computation of fast numerical transforms. Attention is given to a system, comprising several spatial light modulators (SLMs), an optical read/write memory, and a functional block, which performs simple, space-invariant shifts on images with sufficient flexibility to implement the fastest known methods for partial differential equations as well as a wide variety of numerical transforms in two or more dimensions. Either fixed or floating-point arithmetic may be used. A performance projection of more than 1 billion floating point operations/sec using SLMs with 1000 x 1000-resolution and operating at 1-MHz frame rates is made.

Generating and executing programs for a floating point single instruction multiple data instruction set architecture

DOEpatents

Gschwind, Michael K

2013-04-16

Mechanisms for generating and executing programs for a floating point (FP) only single instruction multiple data (SIMD) instruction set architecture (ISA) are provided. A computer program product comprising a computer recordable medium having a computer readable program recorded thereon is provided. The computer readable program, when executed on a computing device, causes the computing device to receive one or more instructions and execute the one or more instructions using logic in an execution unit of the computing device. The logic implements a floating point (FP) only single instruction multiple data (SIMD) instruction set architecture (ISA), based on data stored in a vector register file of the computing device. The vector register file is configured to store both scalar and floating point values as vectors having a plurality of vector elements.

Route planning in a four-dimensional environment

NASA Technical Reports Server (NTRS)

Slack, M. G.; Miller, D. P.

1987-01-01

Robots must be able to function in the real world. The real world involves processes and agents that move independently of the actions of the robot, sometimes in an unpredictable manner. A real-time integrated route planning and spatial representation system for planning routes through dynamic domains is presented. The system will find the safest most efficient route through space-time as described by a set of user defined evaluation functions. Because the route planning algorthims is highly parallel and can run on an SIMD machine in O(p) time (p is the length of a path), the system will find real-time paths through unpredictable domains when used in an incremental mode. Spatial representation, an SIMD algorithm for route planning in a dynamic domain, and results from an implementation on a traditional computer architecture are discussed.

A FAST ITERATIVE METHOD FOR SOLVING THE EIKONAL EQUATION ON TETRAHEDRAL DOMAINS

PubMed Central

Fu, Zhisong; Kirby, Robert M.; Whitaker, Ross T.

2014-01-01

Generating numerical solutions to the eikonal equation and its many variations has a broad range of applications in both the natural and computational sciences. Efficient solvers on cutting-edge, parallel architectures require new algorithms that may not be theoretically optimal, but that are designed to allow asynchronous solution updates and have limited memory access patterns. This paper presents a parallel algorithm for solving the eikonal equation on fully unstructured tetrahedral meshes. The method is appropriate for the type of fine-grained parallelism found on modern massively-SIMD architectures such as graphics processors and takes into account the particular constraints and capabilities of these computing platforms. This work builds on previous work for solving these equations on triangle meshes; in this paper we adapt and extend previous two-dimensional strategies to accommodate three-dimensional, unstructured, tetrahedralized domains. These new developments include a local update strategy with data compaction for tetrahedral meshes that provides solutions on both serial and parallel architectures, with a generalization to inhomogeneous, anisotropic speed functions. We also propose two new update schemes, specialized to mitigate the natural data increase observed when moving to three dimensions, and the data structures necessary for efficiently mapping data to parallel SIMD processors in a way that maintains computational density. Finally, we present descriptions of the implementations for a single CPU, as well as multicore CPUs with shared memory and SIMD architectures, with comparative results against state-of-the-art eikonal solvers. PMID:25221418

Modern multicore and manycore architectures: Modelling, optimisation and benchmarking a multiblock CFD code

NASA Astrophysics Data System (ADS)

Hadade, Ioan; di Mare, Luca

2016-08-01

Modern multicore and manycore processors exhibit multiple levels of parallelism through a wide range of architectural features such as SIMD for data parallel execution or threads for core parallelism. The exploitation of multi-level parallelism is therefore crucial for achieving superior performance on current and future processors. This paper presents the performance tuning of a multiblock CFD solver on Intel SandyBridge and Haswell multicore CPUs and the Intel Xeon Phi Knights Corner coprocessor. Code optimisations have been applied on two computational kernels exhibiting different computational patterns: the update of flow variables and the evaluation of the Roe numerical fluxes. We discuss at great length the code transformations required for achieving efficient SIMD computations for both kernels across the selected devices including SIMD shuffles and transpositions for flux stencil computations and global memory transformations. Core parallelism is expressed through threading based on a number of domain decomposition techniques together with optimisations pertaining to alleviating NUMA effects found in multi-socket compute nodes. Results are correlated with the Roofline performance model in order to assert their efficiency for each distinct architecture. We report significant speedups for single thread execution across both kernels: 2-5X on the multicore CPUs and 14-23X on the Xeon Phi coprocessor. Computations at full node and chip concurrency deliver a factor of three speedup on the multicore processors and up to 24X on the Xeon Phi manycore coprocessor.

VASP-4096: a very high performance programmable device for digital media processing applications

NASA Astrophysics Data System (ADS)

Krikelis, Argy

2001-03-01

Over the past few years, technology drivers for microprocessors have changed significantly. Media data delivery and processing--such as telecommunications, networking, video processing, speech recognition and 3D graphics--is increasing in importance and will soon dominate the processing cycles consumed in computer-based systems. This paper presents the architecture of the VASP-4096 processor. VASP-4096 provides high media performance with low energy consumption by integrating associative SIMD parallel processing with embedded microprocessor technology. The major innovations in the VASP-4096 is the integration of thousands of processing units in a single chip that are capable of support software programmable high-performance mathematical functions as well as abstract data processing. In addition to 4096 processing units, VASP-4096 integrates on a single chip a RISC controller that is an implementation of the SPARC architecture, 128 Kbytes of Data Memory, and I/O interfaces. The SIMD processing in VASP-4096 implements the ASProCore architecture, which is a proprietary implementation of SIMD processing, operates at 266 MHz with program instructions issued by the RISC controller. The device also integrates a 64-bit synchronous main memory interface operating at 133 MHz (double-data rate), and a 64- bit 66 MHz PCI interface. VASP-4096, compared with other processors architectures that support media processing, offers true performance scalability, support for deterministic and non-deterministic data processing on a single device, and software programmability that can be re- used in future chip generations.

Introducing difference recurrence relations for faster semi-global alignment of long sequences.

PubMed

Suzuki, Hajime; Kasahara, Masahiro

2018-02-19

The read length of single-molecule DNA sequencers is reaching 1 Mb. Popular alignment software tools widely used for analyzing such long reads often take advantage of single-instruction multiple-data (SIMD) operations to accelerate calculation of dynamic programming (DP) matrices in the Smith-Waterman-Gotoh (SWG) algorithm with a fixed alignment start position at the origin. Nonetheless, 16-bit or 32-bit integers are necessary for storing the values in a DP matrix when sequences to be aligned are long; this situation hampers the use of the full SIMD width of modern processors. We proposed a faster semi-global alignment algorithm, "difference recurrence relations," that runs more rapidly than the state-of-the-art algorithm by a factor of 2.1. Instead of calculating and storing all the values in a DP matrix directly, our algorithm computes and stores mainly the differences between the values of adjacent cells in the matrix. Although the SWG algorithm and our algorithm can output exactly the same result, our algorithm mainly involves 8-bit integer operations, enabling us to exploit the full width of SIMD operations (e.g., 32) on modern processors. We also developed a library, libgaba, so that developers can easily integrate our algorithm into alignment programs. Our novel algorithm and optimized library implementation will facilitate accelerating nucleotide long-read analysis algorithms that use pairwise alignment stages. The library is implemented in the C programming language and available at https://github.com/ocxtal/libgaba .

Efficiently modeling neural networks on massively parallel computers

NASA Technical Reports Server (NTRS)

Farber, Robert M.

1993-01-01

Neural networks are a very useful tool for analyzing and modeling complex real world systems. Applying neural network simulations to real world problems generally involves large amounts of data and massive amounts of computation. To efficiently handle the computational requirements of large problems, we have implemented at Los Alamos a highly efficient neural network compiler for serial computers, vector computers, vector parallel computers, and fine grain SIMD computers such as the CM-2 connection machine. This paper describes the mapping used by the compiler to implement feed-forward backpropagation neural networks for a SIMD (Single Instruction Multiple Data) architecture parallel computer. Thinking Machines Corporation has benchmarked our code at 1.3 billion interconnects per second (approximately 3 gigaflops) on a 64,000 processor CM-2 connection machine (Singer 1990). This mapping is applicable to other SIMD computers and can be implemented on MIMD computers such as the CM-5 connection machine. Our mapping has virtually no communications overhead with the exception of the communications required for a global summation across the processors (which has a sub-linear runtime growth on the order of O(log(number of processors)). We can efficiently model very large neural networks which have many neurons and interconnects and our mapping can extend to arbitrarily large networks (within memory limitations) by merging the memory space of separate processors with fast adjacent processor interprocessor communications. This paper will consider the simulation of only feed forward neural network although this method is extendable to recurrent networks.

Neuromorphic processing for next generation automotive control and diagnostics

NASA Technical Reports Server (NTRS)

Aranki, N.; Tawel, R.

2001-01-01

This paper describes intra-layer architecture of a neuroprocessor organized in a SIMD configuration and the two challenging applications, misfire detection and engine idle speed control, that had served as the focus of this effort.

A system for routing arbitrary directed graphs on SIMD architectures

NASA Technical Reports Server (NTRS)

Tomboulian, Sherryl

1987-01-01

There are many problems which can be described in terms of directed graphs that contain a large number of vertices where simple computations occur using data from connecting vertices. A method is given for parallelizing such problems on an SIMD machine model that is bit-serial and uses only nearest neighbor connections for communication. Each vertex of the graph will be assigned to a processor in the machine. Algorithms are given that will be used to implement movement of data along the arcs of the graph. This architecture and algorithms define a system that is relatively simple to build and can do graph processing. All arcs can be transversed in parallel in time O(T), where T is empirically proportional to the diameter of the interconnection network times the average degree of the graph. Modifying or adding a new arc takes the same time as parallel traversal.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Langer, Steven H.; Karlin, Ian; Marinak, Marty M.

HYDRA is used to simulate a variety of experiments carried out at the National Ignition Facility (NIF) [4] and other high energy density physics facilities. HYDRA has packages to simulate radiation transfer, atomic physics, hydrodynamics, laser propagation, and a number of other physics effects. HYDRA has over one million lines of code and includes both MPI and thread-level (OpenMP and pthreads) parallelism. This paper measures the performance characteristics of HYDRA using hardware counters on an IBM BlueGene/Q system. We report key ratios such as bytes/instruction and memory bandwidth for several different physics packages. The total number of bytes read andmore » written per time step is also reported. We show that none of the packages which use significant time are memory bandwidth limited on a Blue Gene/Q. HYDRA currently issues very few SIMD instructions. The pressure on memory bandwidth will increase if high levels of SIMD instructions can be achieved.« less

Accelerating navigation in the VecGeom geometry modeller

NASA Astrophysics Data System (ADS)

Wenzel, Sandro; Zhang, Yang; pre="for the"> VecGeom Developers,

2017-10-01

The VecGeom geometry library is a relatively recent effort aiming to provide a modern and high performance geometry service for particle detector simulation in hierarchical detector geometries common to HEP experiments. One of its principal targets is the efficient use of vector SIMD hardware instructions to accelerate geometry calculations for single track as well as multi-track queries. Previously, excellent performance improvements compared to Geant4/ROOT could be reported for elementary geometry algorithms at the level of single shape queries. In this contribution, we will focus on the higher level navigation algorithms in VecGeom, which are the most important components as seen from the simulation engines. We will first report on our R&D effort and developments to implement SIMD enhanced data structures to speed up the well-known “voxelised” navigation algorithms, ubiquitously used for particle tracing in complex detector modules consisting of many daughter parts. Second, we will discuss complementary new approaches to improve navigation algorithms in HEP. These ideas are based on a systematic exploitation of static properties of the detector layout as well as automatic code generation and specialisation of the C++ navigator classes. Such specialisations reduce the overhead of generic- or virtual function based algorithms and enhance the effectiveness of the SIMD vector units. These novel approaches go well beyond the existing solutions available in Geant4 or TGeo/ROOT, achieve a significantly superior performance, and might be of interest for a wide range of simulation backends (GeantV, Geant4). We exemplify this with concrete benchmarks for the CMS and ALICE detectors.

Faster Smith-Waterman database searches with inter-sequence SIMD parallelisation

PubMed Central

2011-01-01

Background The Smith-Waterman algorithm for local sequence alignment is more sensitive than heuristic methods for database searching, but also more time-consuming. The fastest approach to parallelisation with SIMD technology has previously been described by Farrar in 2007. The aim of this study was to explore whether further speed could be gained by other approaches to parallelisation. Results A faster approach and implementation is described and benchmarked. In the new tool SWIPE, residues from sixteen different database sequences are compared in parallel to one query residue. Using a 375 residue query sequence a speed of 106 billion cell updates per second (GCUPS) was achieved on a dual Intel Xeon X5650 six-core processor system, which is over six times more rapid than software based on Farrar's 'striped' approach. SWIPE was about 2.5 times faster when the programs used only a single thread. For shorter queries, the increase in speed was larger. SWIPE was about twice as fast as BLAST when using the BLOSUM50 score matrix, while BLAST was about twice as fast as SWIPE for the BLOSUM62 matrix. The software is designed for 64 bit Linux on processors with SSSE3. Source code is available from http://dna.uio.no/swipe/ under the GNU Affero General Public License. Conclusions Efficient parallelisation using SIMD on standard hardware makes it possible to run Smith-Waterman database searches more than six times faster than before. The approach described here could significantly widen the potential application of Smith-Waterman searches. Other applications that require optimal local alignment scores could also benefit from improved performance. PMID:21631914

Faster Smith-Waterman database searches with inter-sequence SIMD parallelisation.

PubMed

Rognes, Torbjørn

2011-06-01

The Smith-Waterman algorithm for local sequence alignment is more sensitive than heuristic methods for database searching, but also more time-consuming. The fastest approach to parallelisation with SIMD technology has previously been described by Farrar in 2007. The aim of this study was to explore whether further speed could be gained by other approaches to parallelisation. A faster approach and implementation is described and benchmarked. In the new tool SWIPE, residues from sixteen different database sequences are compared in parallel to one query residue. Using a 375 residue query sequence a speed of 106 billion cell updates per second (GCUPS) was achieved on a dual Intel Xeon X5650 six-core processor system, which is over six times more rapid than software based on Farrar's 'striped' approach. SWIPE was about 2.5 times faster when the programs used only a single thread. For shorter queries, the increase in speed was larger. SWIPE was about twice as fast as BLAST when using the BLOSUM50 score matrix, while BLAST was about twice as fast as SWIPE for the BLOSUM62 matrix. The software is designed for 64 bit Linux on processors with SSSE3. Source code is available from http://dna.uio.no/swipe/ under the GNU Affero General Public License. Efficient parallelisation using SIMD on standard hardware makes it possible to run Smith-Waterman database searches more than six times faster than before. The approach described here could significantly widen the potential application of Smith-Waterman searches. Other applications that require optimal local alignment scores could also benefit from improved performance.

Efficient Hardware Implementation of the Horn-Schunck Algorithm for High-Resolution Real-Time Dense Optical Flow Sensor

PubMed Central

Komorkiewicz, Mateusz; Kryjak, Tomasz; Gorgon, Marek

2014-01-01

This article presents an efficient hardware implementation of the Horn-Schunck algorithm that can be used in an embedded optical flow sensor. An architecture is proposed, that realises the iterative Horn-Schunck algorithm in a pipelined manner. This modification allows to achieve data throughput of 175 MPixels/s and makes processing of Full HD video stream (1, 920 × 1, 080 @ 60 fps) possible. The structure of the optical flow module as well as pre- and post-filtering blocks and a flow reliability computation unit is described in details. Three versions of optical flow modules, with different numerical precision, working frequency and obtained results accuracy are proposed. The errors caused by switching from floating- to fixed-point computations are also evaluated. The described architecture was tested on popular sequences from an optical flow dataset of the Middlebury University. It achieves state-of-the-art results among hardware implementations of single scale methods. The designed fixed-point architecture achieves performance of 418 GOPS with power efficiency of 34 GOPS/W. The proposed floating-point module achieves 103 GFLOPS, with power efficiency of 24 GFLOPS/W. Moreover, a 100 times speedup compared to a modern CPU with SIMD support is reported. A complete, working vision system realized on Xilinx VC707 evaluation board is also presented. It is able to compute optical flow for Full HD video stream received from an HDMI camera in real-time. The obtained results prove that FPGA devices are an ideal platform for embedded vision systems. PMID:24526303

Efficient hardware implementation of the Horn-Schunck algorithm for high-resolution real-time dense optical flow sensor.

PubMed

Komorkiewicz, Mateusz; Kryjak, Tomasz; Gorgon, Marek

2014-02-12

This article presents an efficient hardware implementation of the Horn-Schunck algorithm that can be used in an embedded optical flow sensor. An architecture is proposed, that realises the iterative Horn-Schunck algorithm in a pipelined manner. This modification allows to achieve data throughput of 175 MPixels/s and makes processing of Full HD video stream (1; 920 × 1; 080 @ 60 fps) possible. The structure of the optical flow module as well as pre- and post-filtering blocks and a flow reliability computation unit is described in details. Three versions of optical flow modules, with different numerical precision, working frequency and obtained results accuracy are proposed. The errors caused by switching from floating- to fixed-point computations are also evaluated. The described architecture was tested on popular sequences from an optical flow dataset of the Middlebury University. It achieves state-of-the-art results among hardware implementations of single scale methods. The designed fixed-point architecture achieves performance of 418 GOPS with power efficiency of 34 GOPS/W. The proposed floating-point module achieves 103 GFLOPS, with power efficiency of 24 GFLOPS/W. Moreover, a 100 times speedup compared to a modern CPU with SIMD support is reported. A complete, working vision system realized on Xilinx VC707 evaluation board is also presented. It is able to compute optical flow for Full HD video stream received from an HDMI camera in real-time. The obtained results prove that FPGA devices are an ideal platform for embedded vision systems.

The 2nd Symposium on the Frontiers of Massively Parallel Computations

NASA Technical Reports Server (NTRS)

Mills, Ronnie (Editor)

1988-01-01

Programming languages, computer graphics, neural networks, massively parallel computers, SIMD architecture, algorithms, digital terrain models, sort computation, simulation of charged particle transport on the massively parallel processor and image processing are among the topics discussed.

The Stream-Catchment (StreamCat) Dataset: A database of watershed metrics for the conterminous USA

EPA Science Inventory

We developed an extensive database of landscape metrics for ~2.65 million streams, and their associated catchments, within the conterminous USA: The Stream-Catchment (StreamCat) Dataset. These data are publically available and greatly reduce the specialized geospatial expertise n...

Nutrient interleaving below the mixed layer of the Kuroshio Extension Front

NASA Astrophysics Data System (ADS)

Nagai, Takeyoshi; Clayton, Sophie

2017-08-01

Nitrate interleaving structures were observed below the mixed layer during a cruise to the Kuroshio Extension in October 2009. In this paper, we investigate the formation mechanisms for these vertical nitrate anomalies, which may be an important source of nitrate to the oligotrphoc surface waters south of the Kuroshio Extension Front. We found that nitrate concentrations below the main stream of the Kuroshio Extension were elevated compared to the ambient water of the same density ( σ 𝜃 = 23.5-25). This appears to be analogous to the "nutrient stream" below the mixed layer, associated with the Gulf Stream. Strong turbulence was observed above the vertical nitrate anomaly, and we found that this can drive a large vertical turbulent nitrate flux >O (1 mmol N m-2 day-1). A realistic, high-resolution (2 km) numerical simulation reproduces the observed Kuroshio nutrient stream and nitrate interleaving structures, with similar lateral and vertical scales. The model results suggest that the nitrate interleaving structures are first generated at the western side of the meander crest on the south side of the Kuroshio Extension, where the southern tip of the mixed layer front is under frontogenesis. Lagrangian analyses reveal that the vertical shear of geostrophic and subinertial ageostrophic flow below the mixed layer tilts the existing along-isopycnal nitrate gradient of the Kuroshio nutrient stream to form nitrate interleaving structures. This study suggests that the multi-scale combination of (i) the lateral stirring of the Kuroshio nutrient stream by developed mixed layer fronts during fall to winter, (ii) the associated tilting of along-isopycnal nitrate gradient of the nutrient stream by subinertial shear, which forms vertical interleaving structures, and (iii) the strong turbulent diffusion above them, may provide a route to supply nutrients to oligotrophic surface waters on the south side of the Kuroshio Extension.

IMPACTS OF LAND USE ON HYDROLOGIC FLOW PERMANENCE IN HEADWATER STREAMS

EPA Science Inventory

Extensive urbanization in the watershed can alter the stream hydrology by increasing peak runoff frequency and reducing base flows, causing subsequent impairment of stream community structure. In addition, development effectively eliminates some headwater streams, being piped an...

The burial of headwater streams in drainage pipes reduces in-stream nitrate retention: results from two US metropolitan areas

EPA Science Inventory

Urbanization causes stream degradation in various ways, but perhaps the most extreme example is the burial of streams in underground storm drains to facilitate above ground development or to promote the rapid conveyance of stormwater. Stream burial is extensive in urban basins (...

Generic accelerated sequence alignment in SeqAn using vectorization and multi-threading.

PubMed

Rahn, René; Budach, Stefan; Costanza, Pascal; Ehrhardt, Marcel; Hancox, Jonny; Reinert, Knut

2018-05-03

Pairwise sequence alignment is undoubtedly a central tool in many bioinformatics analyses. In this paper, we present a generically accelerated module for pairwise sequence alignments applicable for a broad range of applications. In our module, we unified the standard dynamic programming kernel used for pairwise sequence alignments and extended it with a generalized inter-sequence vectorization layout, such that many alignments can be computed simultaneously by exploiting SIMD (Single Instruction Multiple Data) instructions of modern processors. We then extended the module by adding two layers of thread-level parallelization, where we a) distribute many independent alignments on multiple threads and b) inherently parallelize a single alignment computation using a work stealing approach producing a dynamic wavefront progressing along the minor diagonal. We evaluated our alignment vectorization and parallelization on different processors, including the newest Intel® Xeon® (Skylake) and Intel® Xeon Phi™ (KNL) processors, and use cases. The instruction set AVX512-BW (Byte and Word), available on Skylake processors, can genuinely improve the performance of vectorized alignments. We could run single alignments 1600 times faster on the Xeon Phi™ and 1400 times faster on the Xeon® than executing them with our previous sequential alignment module. The module is programmed in C++ using the SeqAn (Reinert et al., 2017) library and distributed with version 2.4. under the BSD license. We support SSE4, AVX2, AVX512 instructions and included UME::SIMD, a SIMD-instruction wrapper library, to extend our module for further instruction sets. We thoroughly test all alignment components with all major C++ compilers on various platforms. rene.rahn@fu-berlin.de.

A GPU-Parallelized Eigen-Based Clutter Filter Framework for Ultrasound Color Flow Imaging.

PubMed

Chee, Adrian J Y; Yiu, Billy Y S; Yu, Alfred C H

2017-01-01

Eigen-filters with attenuation response adapted to clutter statistics in color flow imaging (CFI) have shown improved flow detection sensitivity in the presence of tissue motion. Nevertheless, its practical adoption in clinical use is not straightforward due to the high computational cost for solving eigendecompositions. Here, we provide a pedagogical description of how a real-time computing framework for eigen-based clutter filtering can be developed through a single-instruction, multiple data (SIMD) computing approach that can be implemented on a graphical processing unit (GPU). Emphasis is placed on the single-ensemble-based eigen-filtering approach (Hankel singular value decomposition), since it is algorithmically compatible with GPU-based SIMD computing. The key algebraic principles and the corresponding SIMD algorithm are explained, and annotations on how such algorithm can be rationally implemented on the GPU are presented. Real-time efficacy of our framework was experimentally investigated on a single GPU device (GTX Titan X), and the computing throughput for varying scan depths and slow-time ensemble lengths was studied. Using our eigen-processing framework, real-time video-range throughput (24 frames/s) can be attained for CFI frames with full view in azimuth direction (128 scanlines), up to a scan depth of 5 cm ( λ pixel axial spacing) for slow-time ensemble length of 16 samples. The corresponding CFI image frames, with respect to the ones derived from non-adaptive polynomial regression clutter filtering, yielded enhanced flow detection sensitivity in vivo, as demonstrated in a carotid imaging case example. These findings indicate that the GPU-enabled eigen-based clutter filtering can improve CFI flow detection performance in real time.

PIC codes for plasma accelerators on emerging computer architectures (GPUS, Multicore/Manycore CPUS)

NASA Astrophysics Data System (ADS)

Vincenti, Henri

2016-03-01

The advent of exascale computers will enable 3D simulations of a new laser-plasma interaction regimes that were previously out of reach of current Petasale computers. However, the paradigm used to write current PIC codes will have to change in order to fully exploit the potentialities of these new computing architectures. Indeed, achieving Exascale computing facilities in the next decade will be a great challenge in terms of energy consumption and will imply hardware developments directly impacting our way of implementing PIC codes. As data movement (from die to network) is by far the most energy consuming part of an algorithm future computers will tend to increase memory locality at the hardware level and reduce energy consumption related to data movement by using more and more cores on each compute nodes (''fat nodes'') that will have a reduced clock speed to allow for efficient cooling. To compensate for frequency decrease, CPU machine vendors are making use of long SIMD instruction registers that are able to process multiple data with one arithmetic operator in one clock cycle. SIMD register length is expected to double every four years. GPU's also have a reduced clock speed per core and can process Multiple Instructions on Multiple Datas (MIMD). At the software level Particle-In-Cell (PIC) codes will thus have to achieve both good memory locality and vectorization (for Multicore/Manycore CPU) to fully take advantage of these upcoming architectures. In this talk, we present the portable solutions we implemented in our high performance skeleton PIC code PICSAR to both achieve good memory locality and cache reuse as well as good vectorization on SIMD architectures. We also present the portable solutions used to parallelize the Pseudo-sepctral quasi-cylindrical code FBPIC on GPUs using the Numba python compiler.

Estimating cumulative effects of clearcutting on stream temperatures

USGS Publications Warehouse

Bartholow, J.M.

2000-01-01

The Stream Segment Temperature Model was used to estimate cumulative effects of large-scale timber harvest on stream temperature. Literature values were used to create parameters for the model for two hypothetical situations, one forested and the other extensively clearcut. Results compared favorably with field studies of extensive forest canopy removal. The model provided insight into the cumulative effects of clearcutting. Change in stream shading was, as expected, the most influential factor governing increases in maximum daily water temperature, accounting for 40% of the total increase. Altered stream width was found to be more influential than changes to air temperature. Although the net effect from clearcutting was a 4oC warming, increased wind and reduced humidity tended to cool the stream. Temperature increases due to clearcutting persisted 10 km downstream into an unimpacted forest segment of the hypothetical stream, but those increases were moderated by cooler equilibrium conditions downstream. The model revealed that it is a complex set of factors, not single factors such as shade or air temperature, that governs stream temperature dynamics.

Effects of urban stream burial on nitrogen uptake and ecosystem metabolism: implications for watershed nitrogen and carbon fluxes

EPA Science Inventory

Urbanization has resulted in extensive burial and channelization of headwater streams, yet little is known about impacts on stream ecosystem functions critical for reducing downstream nitrogen pollution. To characterize the biogeochemical impact of stream burial, we measured NO3...

Ray tracing on the MPP

NASA Technical Reports Server (NTRS)

Dorband, John E.

1987-01-01

Generating graphics to faithfully represent information can be a computationally intensive task. A way of using the Massively Parallel Processor to generate images by ray tracing is presented. This technique uses sort computation, a method of performing generalized routing interspersed with computation on a single-instruction-multiple-data (SIMD) computer.

Parallel optimization algorithms and their implementation in VLSI design

NASA Technical Reports Server (NTRS)

Lee, G.; Feeley, J. J.

1991-01-01

Two new parallel optimization algorithms based on the simplex method are described. They may be executed by a SIMD parallel processor architecture and be implemented in VLSI design. Several VLSI design implementations are introduced. An application example is reported to demonstrate that the algorithms are effective.

An Analysis of Instruction-Cached SIMD Computer Architecture

DTIC Science & Technology

1993-12-01

ASSEBLE SIMULATE SCHEDULE VERIFY :t og ... . .. ... V~JSRUCTONSFOR PECIIEDCOMPARE ASSEMBLEI SIMULATE Ift*U1II ~ ~ SCHEDULEIinw ;. & VERIFY...Cache to Place Blocks ................. 70 4.5.4 Step 4: Schedule Cache Blocks ............................. 70 4.5.5 Step 5: Store Cache Blocks...167 B.4 Scheduler .............................................. 167 B.4.1 Basic Block Definition

Recovery of stream ecosystem metabolism from historical agriculture

Treesearch

M.E. McTammany; E.F. Benfield; J.R. Webster

2007-01-01

Agriculture has influenced southern Appalachian streams for centuries, but recent socioeconomic trends in the region have led to extensive reforestation agricultural land. Stream ecosystem metabolism might recover from agricultural influence as watersheds undergo reforestation, particularly when shade from terrestrial vegetation is restored. We determined historical (...

Design of a massively parallel computer using bit serial processing elements

NASA Technical Reports Server (NTRS)

Aburdene, Maurice F.; Khouri, Kamal S.; Piatt, Jason E.; Zheng, Jianqing

1995-01-01

A 1-bit serial processor designed for a parallel computer architecture is described. This processor is used to develop a massively parallel computational engine, with a single instruction-multiple data (SIMD) architecture. The computer is simulated and tested to verify its operation and to measure its performance for further development.

Implementation and analysis of a Navier-Stokes algorithm on parallel computers

NASA Technical Reports Server (NTRS)

Fatoohi, Raad A.; Grosch, Chester E.

1988-01-01

The results of the implementation of a Navier-Stokes algorithm on three parallel/vector computers are presented. The object of this research is to determine how well, or poorly, a single numerical algorithm would map onto three different architectures. The algorithm is a compact difference scheme for the solution of the incompressible, two-dimensional, time-dependent Navier-Stokes equations. The computers were chosen so as to encompass a variety of architectures. They are the following: the MPP, an SIMD machine with 16K bit serial processors; Flex/32, an MIMD machine with 20 processors; and Cray/2. The implementation of the algorithm is discussed in relation to these architectures and measures of the performance on each machine are given. The basic comparison is among SIMD instruction parallelism on the MPP, MIMD process parallelism on the Flex/32, and vectorization of a serial code on the Cray/2. Simple performance models are used to describe the performance. These models highlight the bottlenecks and limiting factors for this algorithm on these architectures. Finally, conclusions are presented.

Large wood debris recruitment on differing riparian landforms along a Gulf Coastal Plain (USA) stream: a comparison of large floods and average flows

Treesearch

Stephen W. Golladay; Juliann M. Battle; Brian J. Palik

2007-01-01

In southeastern Coastal Plain streams, wood debris can be very abundant and is recruited from extensive forested floodplains. Despite importance of wood debris, there have been few opportunities to examine recruitment and redistribution of wood in an undisturbed setting, particularly in the southeastern Coastal Plain. Following extensive flooding in 1994, measurements...

Hydrologic influence on sediment transport of low-gradient, forested headwater streams in central Louisiana

Treesearch

Philip Saksa; Yi Jun Xu; Richard Stich

2013-01-01

Extensive research has been conducted on headwater streams in regions with high topographic variation. However, relatively few studies have examined low-gradient headwater stream systems, such as those existing in much of the southeastern Coastal Plain. The focus of this study is to investigate spatial and temporal variation of headwater stream hydrology in a low-...

Checking for Circular Dependencies in Distributed Stream Programs

DTIC Science & Technology

2011-08-29

extensions to express new complexities more conve- nient. Teleport messaging ( TMG ) in the StreamIt language [30] is an example. 1.1 StreamIt Language...dynamicities to an FIR computation Thies et al. in [30] give a TMG model for distributed stream pro- grams. TMG is a mechanism that implements control...messages for stream graphs. The TMG mechanism is designed not to interfere with original dataflow graphs’ structures and scheduling, therefore a key

Aufeis accumulations in stream bottoms in arctic and subarctic environments as a possible indicator of geologic structure: Chapter F in Recent U.S. Geological Survey studies in the Tintina Gold Province, Alaska, United States, and Yukon, Canada--results of a 5-year project

USGS Publications Warehouse

Wanty, Richard B.; Wang, Bronwen; Vohden, Jim; Day, Warren C.; Gough, Larry P.; Gough, Larry P.; Day, Warren C.

2007-01-01

The thickest (>3 meters) and most extensive aufeis (100’s of meters to kilometers along valleys) coincided with locations of laterally extensive (>5 kilometers) mapped high-angle brittle fault zones, suggesting that the fault zones are hydraulically conductive. Additional evidence of water flow is provided by observed changes in stream-water chemistry in reaches in which aufeis forms, despite a lack of surface tributaries. Minor or no aufeis was observed in many other drainage valleys where no laterally extensive structures have been mapped, implying that aufeis formation results from more than a topographic effect or discharge from bank storage. Thus, the presence of thick, laterally extensive aufeis in highgradient streams may be a useful aid to geologic structural mapping in arctic and subarctic climates.

The impact of social deprivation on the response to a randomised controlled trial of a weight management intervention (BeWEL) for people at increased risk of colorectal cancer.

PubMed

Fisher, A; Craigie, A M; Macleod, M; Steele, R J C; Anderson, A S

2018-06-01

Although 45% of colorectal cancer (CRC) cases may be avoidable through appropriate lifestyle and weight management, health promotion interventions run the risk of widening health inequalities. The BeWEL randomised controlled trial assessed the impact of a diet and activity programme in overweight adults who were diagnosed with a colorectal adenoma, demonstrating a significantly greater weight loss at 12 months in intervention participants than in controls. The present study aimed to compare BeWEL intervention outcomes by participant deprivation status. The intervention group of the BeWEL trial (n = 163) was classified by the Scottish Index of Multiple Deprivation (SIMD) quintiles into 'more deprived' (SIMD 1-2, n = 58) and 'less deprived' (SIMD 3-5, n = 105). Socio-economic and lifestyle variables were compared at baseline to identify potential challenges to intervention adherence in the more deprived. Between group differences at 12 months in primary outcome (change in body weight) and secondary outcomes (cardiovascular risk factors, diet, physical activity, knowledge of CRC risk and psychosocial variables) were assessed by deprivation status. At baseline, education (P = 0.001), income (P < 0.001), spending on physical activity (P = 0.003) and success at previous weight loss attempts (P = 0.007) were significantly lower in the most deprived. At 12 months, no between group differences by deprivation status were detected for changes in primary and main secondary outcomes. Despite potential barriers faced by the more deprived participants, primary and most secondary outcomes were comparable between groups, indicating that this intervention is unlikely to worsen health inequalities and is equally effective across socio-economic groups. © 2017 The Authors. Journal of Human Nutrition and Dietetics published by John Wiley & Sons Ltd on behalf of British Dietetic Association.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Trędak, Przemysław, E-mail: przemyslaw.tredak@fuw.edu.pl; Rudnicki, Witold R.; Interdisciplinary Centre for Mathematical and Computational Modelling, University of Warsaw, ul. Pawińskiego 5a, 02-106 Warsaw

The second generation Reactive Bond Order (REBO) empirical potential is commonly used to accurately model a wide range hydrocarbon materials. It is also extensible to other atom types and interactions. REBO potential assumes complex multi-body interaction model, that is difficult to represent efficiently in the SIMD or SIMT programming model. Hence, despite its importance, no efficient GPGPU implementation has been developed for this potential. Here we present a detailed description of a highly efficient GPGPU implementation of molecular dynamics algorithm using REBO potential. The presented algorithm takes advantage of rarely used properties of the SIMT architecture of a modern GPUmore » to solve difficult synchronizations issues that arise in computations of multi-body potential. Techniques developed for this problem may be also used to achieve efficient solutions of different problems. The performance of proposed algorithm is assessed using a range of model systems. It is compared to highly optimized CPU implementation (both single core and OpenMP) available in LAMMPS package. These experiments show up to 6x improvement in forces computation time using single processor of the NVIDIA Tesla K80 compared to high end 16-core Intel Xeon processor.« less

Simulating Hydrologic Flow and Reactive Transport with PFLOTRAN and PETSc on Emerging Fine-Grained Parallel Computer Architectures

NASA Astrophysics Data System (ADS)

Mills, R. T.; Rupp, K.; Smith, B. F.; Brown, J.; Knepley, M.; Zhang, H.; Adams, M.; Hammond, G. E.

2017-12-01

As the high-performance computing community pushes towards the exascale horizon, power and heat considerations have driven the increasing importance and prevalence of fine-grained parallelism in new computer architectures. High-performance computing centers have become increasingly reliant on GPGPU accelerators and "manycore" processors such as the Intel Xeon Phi line, and 512-bit SIMD registers have even been introduced in the latest generation of Intel's mainstream Xeon server processors. The high degree of fine-grained parallelism and more complicated memory hierarchy considerations of such "manycore" processors present several challenges to existing scientific software. Here, we consider how the massively parallel, open-source hydrologic flow and reactive transport code PFLOTRAN - and the underlying Portable, Extensible Toolkit for Scientific Computation (PETSc) library on which it is built - can best take advantage of such architectures. We will discuss some key features of these novel architectures and our code optimizations and algorithmic developments targeted at them, and present experiences drawn from working with a wide range of PFLOTRAN benchmark problems on these architectures.

An ultra low energy biomedical signal processing system operating at near-threshold.

PubMed

Hulzink, J; Konijnenburg, M; Ashouei, M; Breeschoten, A; Berset, T; Huisken, J; Stuyt, J; de Groot, H; Barat, F; David, J; Van Ginderdeuren, J

2011-12-01

This paper presents a voltage-scalable digital signal processing system designed for the use in a wireless sensor node (WSN) for ambulatory monitoring of biomedical signals. To fulfill the requirements of ambulatory monitoring, power consumption, which directly translates to the WSN battery lifetime and size, must be kept as low as possible. The proposed processing platform is an event-driven system with resources to run applications with different degrees of complexity in an energy-aware way. The architecture uses effective system partitioning to enable duty cycling, single instruction multiple data (SIMD) instructions, power gating, voltage scaling, multiple clock domains, multiple voltage domains, and extensive clock gating. It provides an alternative processing platform where the power and performance can be scaled to adapt to the application need. A case study on a continuous wavelet transform (CWT)-based heart-beat detection shows that the platform not only preserves the sensitivity and positive predictivity of the algorithm but also achieves the lowest energy/sample for ElectroCardioGram (ECG) heart-beat detection publicly reported today.

Multi-GPU and multi-CPU accelerated FDTD scheme for vibroacoustic applications

NASA Astrophysics Data System (ADS)

Francés, J.; Otero, B.; Bleda, S.; Gallego, S.; Neipp, C.; Márquez, A.; Beléndez, A.

2015-06-01

The Finite-Difference Time-Domain (FDTD) method is applied to the analysis of vibroacoustic problems and to study the propagation of longitudinal and transversal waves in a stratified media. The potential of the scheme and the relevance of each acceleration strategy for massively computations in FDTD are demonstrated in this work. In this paper, we propose two new specific implementations of the bi-dimensional scheme of the FDTD method using multi-CPU and multi-GPU, respectively. In the first implementation, an open source message passing interface (OMPI) has been included in order to massively exploit the resources of a biprocessor station with two Intel Xeon processors. Moreover, regarding CPU code version, the streaming SIMD extensions (SSE) and also the advanced vectorial extensions (AVX) have been included with shared memory approaches that take advantage of the multi-core platforms. On the other hand, the second implementation called the multi-GPU code version is based on Peer-to-Peer communications available in CUDA on two GPUs (NVIDIA GTX 670). Subsequently, this paper presents an accurate analysis of the influence of the different code versions including shared memory approaches, vector instructions and multi-processors (both CPU and GPU) and compares them in order to delimit the degree of improvement of using distributed solutions based on multi-CPU and multi-GPU. The performance of both approaches was analysed and it has been demonstrated that the addition of shared memory schemes to CPU computing improves substantially the performance of vector instructions enlarging the simulation sizes that use efficiently the cache memory of CPUs. In this case GPU computing is slightly twice times faster than the fine tuned CPU version in both cases one and two nodes. However, for massively computations explicit vector instructions do not worth it since the memory bandwidth is the limiting factor and the performance tends to be the same than the sequential version with auto-vectorisation and also shared memory approach. In this scenario GPU computing is the best option since it provides a homogeneous behaviour. More specifically, the speedup of GPU computing achieves an upper limit of 12 for both one and two GPUs, whereas the performance reaches peak values of 80 GFlops and 146 GFlops for the performance for one GPU and two GPUs respectively. Finally, the method is applied to an earth crust profile in order to demonstrate the potential of our approach and the necessity of applying acceleration strategies in these type of applications.

CMOS VLSI Layout and Verification of a SIMD Computer

NASA Technical Reports Server (NTRS)

Zheng, Jianqing

1996-01-01

A CMOS VLSI layout and verification of a 3 x 3 processor parallel computer has been completed. The layout was done using the MAGIC tool and the verification using HSPICE. Suggestions for expanding the computer into a million processor network are presented. Many problems that might be encountered when implementing a massively parallel computer are discussed.

Damming Tropical Island Streams: Problems, Solutions, and Alternatives.

Treesearch

JAMES G. MARCH; JONATHAN P. BENSTEAD; CATHERINE M. PRINGLE; FREDERICK N. SCATENA

2003-01-01

The combination of human population growth, increased water usage, and limited groundwater resources often leads to extensive damming of rivers and streams on tropical islands. Ecological effects of dams on tropical islands can be dramatic, because the vast majority of native stream faunas (fishes, shrimps, and snails) migrate between freshwater and saltwater during...

streamgap-pepper: Effects of peppering streams with many small impacts

NASA Astrophysics Data System (ADS)

Bovy, Jo; Erkal, Denis; Sanders, Jason

2017-02-01

streamgap-pepper computes the effect of subhalo fly-bys on cold tidal streams based on the action-angle representation of streams. A line-of-parallel-angle approach is used to calculate the perturbed distribution function of a given stream segment by undoing the effect of all impacts. This approach allows one to compute the perturbed stream density and track in any coordinate system in minutes for realizations of the subhalo distribution down to 10^5 Msun, accounting for the stream's internal dispersion and overlapping impacts. This code uses galpy (ascl:1411.008) and the streampepperdf.py galpy extension, which implements the fast calculation of the perturbed stream structure.

Alternative stream channel maintenance at bridge crossings : final report.

DOT National Transportation Integrated Search

2017-02-01

Ohio Department of Transportation (ODOT) forces undertake routine and sometimes extensive maintenance of stream channels that impact the performance and safety of bridges. Unfortunately, county crews have limited options available to solve maintenanc...

Stream Lifetimes Against Planetary Encounters

NASA Technical Reports Server (NTRS)

Valsecchi, G. B.; Lega, E.; Froeschle, Cl.

2011-01-01

We study, both analytically and numerically, the perturbation induced by an encounter with a planet on a meteoroid stream. Our analytical tool is the extension of pik s theory of close encounters, that we apply to streams described by geocentric variables. The resulting formulae are used to compute the rate at which a stream is dispersed by planetary encounters into the sporadic background. We have verified the accuracy of the analytical model using a numerical test.

StreamQRE: Modular Specification and Efficient Evaluation of Quantitative Queries over Streaming Data.

PubMed

Mamouras, Konstantinos; Raghothaman, Mukund; Alur, Rajeev; Ives, Zachary G; Khanna, Sanjeev

2017-06-01

Real-time decision making in emerging IoT applications typically relies on computing quantitative summaries of large data streams in an efficient and incremental manner. To simplify the task of programming the desired logic, we propose StreamQRE, which provides natural and high-level constructs for processing streaming data. Our language has a novel integration of linguistic constructs from two distinct programming paradigms: streaming extensions of relational query languages and quantitative extensions of regular expressions. The former allows the programmer to employ relational constructs to partition the input data by keys and to integrate data streams from different sources, while the latter can be used to exploit the logical hierarchy in the input stream for modular specifications. We first present the core language with a small set of combinators, formal semantics, and a decidable type system. We then show how to express a number of common patterns with illustrative examples. Our compilation algorithm translates the high-level query into a streaming algorithm with precise complexity bounds on per-item processing time and total memory footprint. We also show how to integrate approximation algorithms into our framework. We report on an implementation in Java, and evaluate it with respect to existing high-performance engines for processing streaming data. Our experimental evaluation shows that (1) StreamQRE allows more natural and succinct specification of queries compared to existing frameworks, (2) the throughput of our implementation is higher than comparable systems (for example, two-to-four times greater than RxJava), and (3) the approximation algorithms supported by our implementation can lead to substantial memory savings.

StreamQRE: Modular Specification and Efficient Evaluation of Quantitative Queries over Streaming Data*

PubMed Central

Mamouras, Konstantinos; Raghothaman, Mukund; Alur, Rajeev; Ives, Zachary G.; Khanna, Sanjeev

2017-01-01

Real-time decision making in emerging IoT applications typically relies on computing quantitative summaries of large data streams in an efficient and incremental manner. To simplify the task of programming the desired logic, we propose StreamQRE, which provides natural and high-level constructs for processing streaming data. Our language has a novel integration of linguistic constructs from two distinct programming paradigms: streaming extensions of relational query languages and quantitative extensions of regular expressions. The former allows the programmer to employ relational constructs to partition the input data by keys and to integrate data streams from different sources, while the latter can be used to exploit the logical hierarchy in the input stream for modular specifications. We first present the core language with a small set of combinators, formal semantics, and a decidable type system. We then show how to express a number of common patterns with illustrative examples. Our compilation algorithm translates the high-level query into a streaming algorithm with precise complexity bounds on per-item processing time and total memory footprint. We also show how to integrate approximation algorithms into our framework. We report on an implementation in Java, and evaluate it with respect to existing high-performance engines for processing streaming data. Our experimental evaluation shows that (1) StreamQRE allows more natural and succinct specification of queries compared to existing frameworks, (2) the throughput of our implementation is higher than comparable systems (for example, two-to-four times greater than RxJava), and (3) the approximation algorithms supported by our implementation can lead to substantial memory savings. PMID:29151821

High Resolution Imaging Testbed Utilizing Sodium Laser Guide Star Adaptive Optics: The Real Time Wavefront Reconstructor Computer

DTIC Science & Technology

2008-07-31

Unlike the Lyrtech, each DSP on a Bittware board offers 3 MB of on-chip memory and 3 GFLOPs of 32-bit peak processing power. Based on the performance...Each NVIDIA 8800 Ultra features 576 GFLOPS on 128 612-MHz single-precision floating-point SIMD processors, arranged in 16 clusters of eight. Each

Stream Width Dynamics in a Small Headwater Catchment

NASA Astrophysics Data System (ADS)

Barefoot, E. A.; Pavelsky, T.; Allen, G. H.; Zimmer, M. A.; McGlynn, B. L.

2016-12-01

Changing streamflow conditions cause small, ephemeral and intermittent stream networks to expand and contract, while simultaneously driving widening and narrowing of streams. The resulting dynamic surface area of ephemeral streams impacts critical hydrological and biogeochemical processes, including air-water gas exchange, solute transport, and sediment transport. Despite the importance of these dynamics, to our knowledge there exists no complete study of how stream widths vary throughout an entire catchment in response to changing streamflow conditions. Here we present the first characterization of how variable hydrologic conditions impact the distribution of stream widths in a 48 ha headwater catchment in the Stony Creek Research Watershed, NC, USA. We surveyed stream widths longitudinally every 5 m on 12 occasions over a range of stream discharge from 7 L/s to 128 L/s at the catchment outlet. We hypothesize that the shape and location of the stream width distribution are driven by the action of two interrelated mechanisms, network extension and at-a-station widening, both of which increase with discharge. We observe that during very low flow conditions, network extension more significantly influences distribution location, and during high flow conditions stream widening is the dominant driver. During moderate flows, we observe an approximately 1 cm rightward shift in the distribution peak with every additional 10 L/s of increased discharge, which we attribute to a greater impact of at-a-station widening on distribution location. Aside from this small shift, the qualitative location and shape of the stream width distribution are largely invariant with changing streamflow. We suggest that the basic characteristics of stream width distributions constitute an equilibrium between the two described mechanisms across variable hydrologic conditions.

Learning From Short Text Streams With Topic Drifts.

PubMed

Li, Peipei; He, Lu; Wang, Haiyan; Hu, Xuegang; Zhang, Yuhong; Li, Lei; Wu, Xindong

2017-09-18

Short text streams such as search snippets and micro blogs have been popular on the Web with the emergence of social media. Unlike traditional normal text streams, these data present the characteristics of short length, weak signal, high volume, high velocity, topic drift, etc. Short text stream classification is hence a very challenging and significant task. However, this challenge has received little attention from the research community. Therefore, a new feature extension approach is proposed for short text stream classification with the help of a large-scale semantic network obtained from a Web corpus. It is built on an incremental ensemble classification model for efficiency. First, more semantic contexts based on the senses of terms in short texts are introduced to make up of the data sparsity using the open semantic network, in which all terms are disambiguated by their semantics to reduce the noise impact. Second, a concept cluster-based topic drifting detection method is proposed to effectively track hidden topic drifts. Finally, extensive studies demonstrate that as compared to several well-known concept drifting detection methods in data stream, our approach can detect topic drifts effectively, and it enables handling short text streams effectively while maintaining the efficiency as compared to several state-of-the-art short text classification approaches.

Sensitivity analysis of a pulse nutrient addition technique for estimating nutrient uptake in large streams

Treesearch

Laurence Lin; J.R. Webster

2012-01-01

The constant nutrient addition technique has been used extensively to measure nutrient uptake in streams. However, this technique is impractical for large streams, and the pulse nutrient addition (PNA) has been suggested as an alternative. We developed a computer model to simulate Monod kinetics nutrient uptake in large rivers and used this model to evaluate the...

Effects of Land Use on Stable Carbon Isotopic Composition and Concentration of Dissolved Organic Carbon (DOC) and Dissolved Inorganic Carbon (DIC) in Southeastern US Piedmont Headwater Streams

EPA Science Inventory

Stable carbon isotopic composition (delta 13C) and concentrations of DOC and DIC were measured in stream water samples collected monthly in 15 headwater streams from an area with extensive poultry and cattle production and a rapidly growing human population. Linear regression te...

Design for fish passage at roadway-stream crossings : synthesis report.

DOT National Transportation Integrated Search

2007-06-01

Cataloging and synthesizing existing methods for the design of roadway-stream crossings for fish passage began in : January 2005 with an extensive literature review covering the topics of culvert design and assessment to facilitate : fish passage. A ...

Transport driven by eddy momentum fluxes in the Gulf Stream Extension region

NASA Astrophysics Data System (ADS)

Greatbatch, R. J.; Zhai, X.; Claus, M.; Czeschel, L.; Rath, W.

2010-12-01

The importance of the Gulf Stream Extension region in climate and seasonal prediction research is being increasingly recognised. Here we use satellite-derived eddy momentum fluxes to drive a shallow water model for the North Atlantic Ocean that includes the realistic ocean bottom topography. The results show that the eddy momentum fluxes can drive significant transport, sufficient to explain the observed increase in transport of the Gulf Stream following its separation from the coast at Cape Hatteras, as well as the observed recirculation gyres. The model also captures recirculating gyres seen in the mean sea surface height field within the North Atlantic Current system east of the Grand Banks of Newfoundland, including a representation of the Mann Eddy.

Coronal Hole Facing Earth

NASA Image and Video Library

2018-05-15

An extensive equatorial coronal hole has rotated so that it is now facing Earth (May 2-4, 2018). The dark coronal hole extends about halfway across the solar disk. It was observed in a wavelength of extreme ultraviolet light. This magnetically open area is streaming solar wind (i.e., a stream of charged particles released from the sun) into space. When Earth enters a solar wind stream and the stream interacts with our magnetosphere, we often experience nice displays of aurora. https://photojournal.jpl.nasa.gov/catalog/PIA00577

Variations in surface water-ground water interactions along a headwater mountain stream: comparisons between transient storage and water balance analyses

Treesearch

Adam S. Ward; Robert A. Payn; Michael N. Gooseff; Brian L. McGlynn; Kenneth E. Bencala; Christa A. Kellecher; Steven M. Wondzell; Thorsten Wagener

2013-01-01

The accumulation of discharge along a stream valley is frequently assumed to be the primary control on solute transport processes. Relationships of both increasing and decreasing transient storage, and decreased gross losses of stream water have been reported with increasing discharge; however, we have yet to validate these relationships with extensive field study. We...

Efficient implementation of the many-body Reactive Bond Order (REBO) potential on GPU

NASA Astrophysics Data System (ADS)

Trędak, Przemysław; Rudnicki, Witold R.; Majewski, Jacek A.

2016-09-01

The second generation Reactive Bond Order (REBO) empirical potential is commonly used to accurately model a wide range hydrocarbon materials. It is also extensible to other atom types and interactions. REBO potential assumes complex multi-body interaction model, that is difficult to represent efficiently in the SIMD or SIMT programming model. Hence, despite its importance, no efficient GPGPU implementation has been developed for this potential. Here we present a detailed description of a highly efficient GPGPU implementation of molecular dynamics algorithm using REBO potential. The presented algorithm takes advantage of rarely used properties of the SIMT architecture of a modern GPU to solve difficult synchronizations issues that arise in computations of multi-body potential. Techniques developed for this problem may be also used to achieve efficient solutions of different problems. The performance of proposed algorithm is assessed using a range of model systems. It is compared to highly optimized CPU implementation (both single core and OpenMP) available in LAMMPS package. These experiments show up to 6x improvement in forces computation time using single processor of the NVIDIA Tesla K80 compared to high end 16-core Intel Xeon processor.

Expanded Target-Chemical Analysis Reveals Extensive Mixed-Organic-Contaminant Exposure in U.S. Streams

EPA Science Inventory

Surface-water from 38 streams nation-wide was assessed using 14 target-organic methods (719 compounds). Designedbioactive anthropogenic contaminants (biocides, pharmaceuticals) comprised 57% of 406 organics detected at least once. The 10 most-frequently detected anthropogenic-org...

Single Pass Streaming BLAST on FPGAs*†

PubMed Central

Herbordt, Martin C.; Model, Josh; Sukhwani, Bharat; Gu, Yongfeng; VanCourt, Tom

2008-01-01

Approximate string matching is fundamental to bioinformatics and has been the subject of numerous FPGA acceleration studies. We address issues with respect to FPGA implementations of both BLAST- and dynamic-programming- (DP) based methods. Our primary contribution is a new algorithm for emulating the seeding and extension phases of BLAST. This operates in a single pass through a database at streaming rate, and with no preprocessing other than loading the query string. Moreover, it emulates parameters turned to maximum possible sensitivity with no slowdown. While current DP-based methods also operate at streaming rate, generating results can be cumbersome. We address this with a new structure for data extraction. We present results from several implementations showing order of magnitude acceleration over serial reference code. A simple extension assures compatibility with NCBI BLAST. PMID:19081828

Impact Of Resolving Submesoscale Features On Modeling The Gulf Stream System

NASA Astrophysics Data System (ADS)

Chassignet, E.; Xu, X.

2016-02-01

Despite being one the best-known circulation pattern of the world ocean, the representation of the Gulf Stream, especially its energetic extension east of the New England Seamounts Chains in the western North Atlantic Ocean, has been a major challenge for ocean general circulation models even at eddy-rich resolutions. Here we show that, for the first time, a simulation of the North Atlantic circulation at 1/50° resolution realistically represents the narrow, energetic jet near 55°W when compared to observations, whereas similarly configured simulations at 1/25° and 1/12° resolution do not. This result highlights the importance of submesoscale features in driving the energetic Gulf Stream extension in the western North Atlantic. The results are discussed in terms of mesoscale and submesoscale energy power spectra.

A stable isotope tracer study of the influences of adjacent land use and riparian condition on fates of nitrate in streams

Treesearch

Daniel J. Sobota; Sherri L. Johnson; Stan V. Gregory; Linda R. Ashkenas

2012-01-01

The influence of land use on potential fates of nitrate in stream ecosystems, ranging from denitrification to storage in organic matter, has not been documented extensively. Here, we describe the Pacific Northwest component of Lotic Intersite Nitrogen eXperiment, phase II (LINX II) to examine how land-use setting influences fates of nitrate in streams.

Ecological consequences of antibiotic exposure to periphyton in naturally colonizing stream mesocosms

EPA Science Inventory

Tetracycline and its derivatives are extensively used human and animal antibiotics, and enter stream ecosystems via point and non-point sources. Laboratory studies indicate that microbial organisms are more sensitive to antibiotics than invertebrates or fish, and may indicate t...

Modeling stream network-scale variation in coho salmon overwinter survival and smolt size

EPA Science Inventory

We used multiple regression and hierarchical mixed-effects models to examine spatial patterns of overwinter survival and size at smolting in juvenile coho salmon Oncorhynchus kisutch in relation to habitat attributes across an extensive stream network in southwestern Oregon over ...

Stream interfaces and energetic ions 2: Ulysses test of Pioneer results

NASA Technical Reports Server (NTRS)

Intriligator, Devrie S.; Siscoe, George L.; Wibberez, Gerd; Kunow, Horst; Gosling, John T.

1995-01-01

Ulysses measurements of energetic and solar wind particles taken near 5 AU between 20 and 30 degrees south latitude during a well-developed recurring corotating interaction region (CIR) show that the CIR's corotating energetic ion population (CEIP) associated with the trailing reverse shock starts within the CIR at the stream interface. This is consistent with an earlier result obtained by Pioneers 10 and 11 in the ecliptic plane between 4 and 6 AU. The Ulysses/Pioneer finding noteworthy since the stream interface is not magnetically connected to the reverse shock but lies 12-17 corotation hours from it. Thus, the finding to be inconsistent with the basic model that generates CEIP particles at the reverse shock and propagates them along field lines Eliminating the inconsistency probably entails an extension of the standard model. We consider two possible extensions cross-field diffusion and energetic particles generation closer to the sun in the gap between the stream interface and the reverse shock.

Coronal Hole Facing Earth

NASA Image and Video Library

2018-05-08

An extensive equatorial coronal hole has rotated so that it is now facing Earth (May 2-4, 2018). The dark coronal hole extends about halfway across the solar disk. It was observed in a wavelength of extreme ultraviolet light. This magnetically open area is streaming solar wind (i.e., a stream of charged particles released from the sun) into space. When Earth enters a solar wind stream and the stream interacts with our magnetosphere, we often experience nice displays of aurora. Videos are available at https://photojournal.jpl.nasa.gov/catalog/PIA00624

Development of Improved Modeling and Analysis Techniques for Dynamics of Shell Structures

DTIC Science & Technology

1991-07-24

Engineering Sciences and Center for Space Structures and Control University of Colorado,Campus Box 429 Boulder, Colorado 80309 Accesion :or -.... ... i...system architecture ; third, to implement a decomposi- tion/mapping procedure that matches as far as possible the layout of the processors to the...element computations. In particular. we address issues that are related to the processor memory size. to the SIMD architecture and to the fast

Implementation of a parallel unstructured Euler solver on the CM-5

NASA Technical Reports Server (NTRS)

Morano, Eric; Mavriplis, D. J.

1995-01-01

An efficient unstructured 3D Euler solver is parallelized on a Thinking Machine Corporation Connection Machine 5, distributed memory computer with vectoring capability. In this paper, the single instruction multiple data (SIMD) strategy is employed through the use of the CM Fortran language and the CMSSL scientific library. The performance of the CMSSL mesh partitioner is evaluated and the overall efficiency of the parallel flow solver is discussed.

Semiannual Report for Contract NAS1-19480 (Institute for Computer Applications in Science and Engineering)

DTIC Science & Technology

1994-06-01

algorithms for large, irreducibly coupled systems iteratively solve concurrent problems within different subspaces of a Hilbert space, or within different...effective on problems amenable to SIMD solution. Together with researchers at AT&T Bell Labs (Boris Lubachevsky, Albert Greenberg ) we have developed...reasonable measurement. In the study of different speedups, various causes of superlinear speedup are also presented. Greenberg , Albert G., Boris D

Efficient, massively parallel eigenvalue computation

NASA Technical Reports Server (NTRS)

Huo, Yan; Schreiber, Robert

1993-01-01

In numerical simulations of disordered electronic systems, one of the most common approaches is to diagonalize random Hamiltonian matrices and to study the eigenvalues and eigenfunctions of a single electron in the presence of a random potential. An effort to implement a matrix diagonalization routine for real symmetric dense matrices on massively parallel SIMD computers, the Maspar MP-1 and MP-2 systems, is described. Results of numerical tests and timings are also presented.

Architecture Adaptive Computing Environment

NASA Technical Reports Server (NTRS)

Dorband, John E.

2006-01-01

Architecture Adaptive Computing Environment (aCe) is a software system that includes a language, compiler, and run-time library for parallel computing. aCe was developed to enable programmers to write programs, more easily than was previously possible, for a variety of parallel computing architectures. Heretofore, it has been perceived to be difficult to write parallel programs for parallel computers and more difficult to port the programs to different parallel computing architectures. In contrast, aCe is supportable on all high-performance computing architectures. Currently, it is supported on LINUX clusters. aCe uses parallel programming constructs that facilitate writing of parallel programs. Such constructs were used in single-instruction/multiple-data (SIMD) programming languages of the 1980s, including Parallel Pascal, Parallel Forth, C*, *LISP, and MasPar MPL. In aCe, these constructs are extended and implemented for both SIMD and multiple- instruction/multiple-data (MIMD) architectures. Two new constructs incorporated in aCe are those of (1) scalar and virtual variables and (2) pre-computed paths. The scalar-and-virtual-variables construct increases flexibility in optimizing memory utilization in various architectures. The pre-computed-paths construct enables the compiler to pre-compute part of a communication operation once, rather than computing it every time the communication operation is performed.

Flexbar 3.0 - SIMD and multicore parallelization.

PubMed

Roehr, Johannes T; Dieterich, Christoph; Reinert, Knut

2017-09-15

High-throughput sequencing machines can process many samples in a single run. For Illumina systems, sequencing reads are barcoded with an additional DNA tag that is contained in the respective sequencing adapters. The recognition of barcode and adapter sequences is hence commonly needed for the analysis of next-generation sequencing data. Flexbar performs demultiplexing based on barcodes and adapter trimming for such data. The massive amounts of data generated on modern sequencing machines demand that this preprocessing is done as efficiently as possible. We present Flexbar 3.0, the successor of the popular program Flexbar. It employs now twofold parallelism: multi-threading and additionally SIMD vectorization. Both types of parallelism are used to speed-up the computation of pair-wise sequence alignments, which are used for the detection of barcodes and adapters. Furthermore, new features were included to cover a wide range of applications. We evaluated the performance of Flexbar based on a simulated sequencing dataset. Our program outcompetes other tools in terms of speed and is among the best tools in the presented quality benchmark. https://github.com/seqan/flexbar. johannes.roehr@fu-berlin.de or knut.reinert@fu-berlin.de. © The Author (2017). Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com

Interactions among forest age, valley and channel morphology, and log jams regulate animal production in mountain streams

NASA Astrophysics Data System (ADS)

Walters, D. M.; Venarsky, M. P.; Hall, R. O., Jr.; Herdrich, A.; Livers, B.; Winkelman, D.; Wohl, E.

2014-12-01

Forest age and local valley morphometry strongly influence the form and function of mountain streams in Colorado. Streams in valleys with old growth forest (>350 years) have extensive log jam complexes that create multi-thread channel reaches with extensive pool habitat and large depositional areas. Streams in younger unmanaged forests (e.g., 120 years old) and intensively managed forests have much fewer log jams and lower wood loads. These are single-thread streams dominated by riffles and with little depositional habitat. We hypothesized that log jam streams would retain more organic matter and have higher metabolism, leading to greater production of stream macroinvertebrates and trout. Log jam reaches should also have greater emergence of adult aquatic insects, and consequently have higher densities of riparian spiders taking advantage of these prey. Surficial organic matter was 3-fold higher in old-growth streams, and these streams had much higher ecosystem respiration. Insect production (g m2 y-1) was similar among forest types, but fish density was four times higher in old-growth streams with copious log jams. However, at the valley scale, insect production (g m-1 valley-1) and trout density (number m-1 valley-1) was 2-fold and 10-fold higher, respectively, in old growth streams. This finding is because multi-thread reaches created by log jams have much greater stream area and stream length per meter of valley than single-thread channels. The more limited response of macroinvertebrates may be related to fish predation. Trout in old growth streams had similar growth rates and higher fat content than fish in other streams in spite of occurring at higher densities and higher elevation/colder temperatures. This suggests that the positive fish effect observed in old growth streams is related to greater availability of invertebrate prey, which is consistent with our original hypothesis. Preliminary analyses suggest that spider densities do not respond strongly to differences in stream morphology, but rather to changes in elevation and associated air temperatures. These results demonstrate strong indirect effects of forest age and valley morphometry on organic matter storage and animal secondary production in streams that is mediated by direct effects associated with the presence or absence of logjams.

Effects of hurricane disturbance on stream water concentrations and fluxes in eight tropical forest watersheds of the Luquillo Experimental Forest, Puerto Rico.

Treesearch

DOUGLAS. A. SCHAEFER; WILLIAM H. McDOWELL; FREDRICK N. SCATENA; CLYDE E. ASBURY

2000-01-01

Stream water chemistry responds substantially to watershed disturbances, but hurricane effects have not been extensively investigated in tropical regions. This study presents a long-term (2.5±11 y) weekly record of stream water chemistry on eight forested watersheds (catchment basins) in the Luquillo Mountains of Puerto Rico. This includes a period before and at least...

StreamFlow 1.0: an extension to the spatially distributed snow model Alpine3D for hydrological modelling and deterministic stream temperature prediction

NASA Astrophysics Data System (ADS)

Gallice, Aurélien; Bavay, Mathias; Brauchli, Tristan; Comola, Francesco; Lehning, Michael; Huwald, Hendrik

2016-12-01

Climate change is expected to strongly impact the hydrological and thermal regimes of Alpine rivers within the coming decades. In this context, the development of hydrological models accounting for the specific dynamics of Alpine catchments appears as one of the promising approaches to reduce our uncertainty of future mountain hydrology. This paper describes the improvements brought to StreamFlow, an existing model for hydrological and stream temperature prediction built as an external extension to the physically based snow model Alpine3D. StreamFlow's source code has been entirely written anew, taking advantage of object-oriented programming to significantly improve its structure and ease the implementation of future developments. The source code is now publicly available online, along with a complete documentation. A special emphasis has been put on modularity during the re-implementation of StreamFlow, so that many model aspects can be represented using different alternatives. For example, several options are now available to model the advection of water within the stream. This allows for an easy and fast comparison between different approaches and helps in defining more reliable uncertainty estimates of the model forecasts. In particular, a case study in a Swiss Alpine catchment reveals that the stream temperature predictions are particularly sensitive to the approach used to model the temperature of subsurface flow, a fact which has been poorly reported in the literature to date. Based on the case study, StreamFlow is shown to reproduce hourly mean discharge with a Nash-Sutcliffe efficiency (NSE) of 0.82 and hourly mean temperature with a NSE of 0.78.

Beyond cool: adapting upland streams for climate change using riparian woodlands.

PubMed

Thomas, Stephen M; Griffiths, Siân W; Ormerod, Steve J

2016-01-01

Managed adaptation could reduce the risks of climate change to the world's ecosystems, but there have been surprisingly few practical evaluations of the options available. For example, riparian woodland is advocated widely as shade to reduce warming in temperate streams, but few studies have considered collateral effects on species composition or ecosystem functions. Here, we use cross-sectional analyses at two scales (region and within streams) to investigate whether four types of riparian management, including those proposed to reduce potential climate change impacts, might also affect the composition, functional character, dynamics and energetic resourcing of macroinvertebrates in upland Welsh streams (UK). Riparian land use across the region had only small effects on invertebrate taxonomic composition, while stable isotope data showed how energetic resources assimilated by macroinvertebrates in all functional guilds were split roughly 50:50 between terrestrial and aquatic origins irrespective of riparian management. Nevertheless, streams draining the most extensive deciduous woodland had the greatest stocks of coarse particulate matter (CPOM) and greater numbers of 'shredding' detritivores. Stream-scale investigations showed that macroinvertebrate biomass in deciduous woodland streams was around twice that in moorland streams, and lowest of all in streams draining non-native conifers. The unexpected absence of contrasting terrestrial signals in the isotopic data implies that factors other than local land use affect the relative incorporation of allochthonous subsidies into riverine food webs. Nevertheless, our results reveal how planting deciduous riparian trees along temperate headwaters as an adaptation to climate change can modify macroinvertebrate function, increase biomass and potentially enhance resilience by increasing basal resources where cover is extensive (>60 m riparian width). We advocate greater urgency in efforts to understand the ecosystem consequences of climate change adaptation to guide future actions. © 2015 John Wiley & Sons Ltd.

Identifying green infrastructure BMPs for reducing nitrogen export to a Chesapeake Bay agricultural stream: model synthesis and extension of experimental data

EPA Science Inventory

Background/Question/Methods The effectiveness of riparian forest buffers and other green infrastructure for reducing nitrogen export to agricultural streams has been well described experimentally, but a clear understanding of process-level hydrological and biogeochemical control...

Effects of legacy sediment removal on hydrology and biogeochemistryin a first order stream in Pennsylvania, USA

EPA Science Inventory

Historic forest conversion to agriculture and associated stream impoundments built for hydropower led to extensive burial of valley bottoms throughout the mid-Atlantic region of the US. These so-called legacy sediments are sources of nutrient and sediment pollutant loads to down...

Modeling stream network-scale variation in Coho salmon overwinter survival and smolt size

Treesearch

Joseph L. Ebersole; Mike E. Colvin; Parker J. Wigington; Scott G. Leibowitz; Joan P. Baker; Jana E. Compton; Bruce A. Miller; Michael A. Carins; Bruce P. Hansen; Henry R. La Vigne

2009-01-01

We used multiple regression and hierarchical mixed-effects models to examine spatial patterns of overwinter survival and size at smolting in juvenile coho salmon Oncorhynchus kisutch in relation to habitat attributes across an extensive stream network in southwestern Oregon over 3 years. Contributing basin area explained the majority of spatial...

Stream restoration and sanitary infrastructure alter sources and fluxes of water, carbon, and nutrients in urban watersheds

NASA Astrophysics Data System (ADS)

Pennino, M. J.; Kaushal, S. S.; Mayer, P. M.; Utz, R. M.; Cooper, C. A.

2015-12-01

An improved understanding of sources and timing of water and nutrient fluxes associated with urban stream restoration is critical for guiding effective watershed management. We investigated how sources, fluxes, and flowpaths of water, carbon (C), nitrogen (N), and phosphorus (P) shift in response to differences in stream restoration and sanitary infrastructure. We compared a restored stream with 3 unrestored streams draining urban development and stormwater management over a 3 year period. We found that there was significantly decreased peak discharge in response to precipitation events following stream restoration. Similarly, we found that the restored stream showed significantly lower monthly peak runoff (9.4 ± 1.0 mm d-1) compared with two urban unrestored streams (ranging from 44.9 ± 4.5 to 55.4 ± 5.8 mm d-1) draining higher impervious surface cover. Peak runoff in the restored stream was more similar to a less developed stream draining extensive stormwater management (13.2 ± 1.9 mm d-1). Interestingly, the restored stream exported most carbon, nitrogen, and phosphorus loads at relatively lower streamflow than the 2 more urban streams, which exported most of their loads at higher and less frequent streamflow. Annual exports of total carbon (6.6 ± 0.5 kg ha-1 yr-1), total nitrogen (4.5 ± 0.3 kg ha-1 yr-1), and total phosphorus (161 ± 15 g ha-1 yr-1) were significantly lower in the restored stream compared to both urban unrestored streams (p < 0.05) and similar to the stream draining stormwater management. Although stream restoration appeared to potentially influence hydrology to some degree, nitrate isotope data suggested that 55 ± 1 % of the nitrate in the restored stream was derived from leaky sanitary sewers (during baseflow), similar to the unrestored streams. Longitudinal synoptic surveys of water and nitrate isotopes along all 4 watersheds suggested the importance of urban groundwater contamination from leaky piped infrastructure. Urban groundwater contamination was also suggested by additional tracer measurements including fluoride (added to drinking water) and iodide (contained in dietary salt). Our results suggest that integrating stream restoration with restoration of aging sanitary infrastructure can be critical to more effectively minimize watershed nutrient export. Given that both stream restoration and sanitary pipe repairs both involve extensive channel manipulation, they can be considered simultaneously in management strategies. In addition, ground water can be a major source of nutrient fluxes in urban watersheds, which has been less considered compared with upland sources and storm drains. Goundwater sources, fluxes, and flowpath should also be targeted in efforts to improve stream restoration strategies and prioritize hydrologic "hot spots" along watersheds where stream restoration is most likely to succeed.

Thermal Fluxes and Temperatures in Small Urban Headwater Streams of the BES LTER: Landscape Forest and Impervious Patches and the Importance of Spatial and Temporal Scales

NASA Astrophysics Data System (ADS)

Kim, H.; Belt, K. T.; Welty, C.; Heisler, G.; Pouyat, R. V.; McGuire, M. P.; Stack, W. P.

2006-05-01

Water and material fluxes from urban landscape patches to small streams are modulated by extensive "engineered" drainage networks. Small urban headwater catchments are different in character and function from their larger receiving streams because of their extensive, direct connections to impervious surface cover (ISC) and their sometimes buried nature. They need to be studied as unique functional hydrologic units if impacts on biota are to be fully understood. As part of the Baltimore Ecosystem Study LTER project, continuous water temperature data are being collected at 2-minute intervals at over twenty small catchments representing various mixtures of forest and ISC. Suburban stream sites with greater ISC generally have higher summer water temperatures. Suburban catchments with most of their channel drainage contained within storm drain pipes show subdued diurnal variation and cool temperatures, but with very large spikes in summer runoff events. Conversely, high ISC urban piped streams have elevated "baseline" temperatures that stand well above all the other monitoring sites. There is a pronounced upstream-downstream effect; nested small headwater catchments experience more frequent, larger temperature spikes related to runoff events than downstream sites. Also, runoff-initiated temperature elevations at small stream sites unexpectedly last much longer than the storm runoff hydrographs. These observations suggest that for small headwater catchments, urban landscapes not only induce an ambient, "heat island" effect on stream temperatures, but also introduce thermal disturbance regimes and fluxes that are not trivial to aquatic biota.

Scan line graphics generation on the massively parallel processor

NASA Technical Reports Server (NTRS)

Dorband, John E.

1988-01-01

Described here is how researchers implemented a scan line graphics generation algorithm on the Massively Parallel Processor (MPP). Pixels are computed in parallel and their results are applied to the Z buffer in large groups. To perform pixel value calculations, facilitate load balancing across the processors and apply the results to the Z buffer efficiently in parallel requires special virtual routing (sort computation) techniques developed by the author especially for use on single-instruction multiple-data (SIMD) architectures.

Geospace simulations on the Cell BE processor

NASA Astrophysics Data System (ADS)

Germaschewski, K.; Raeder, J.; Larson, D.

2008-12-01

OpenGGCM (Open Geospace General circulation Model) is an established numerical code that simulates the Earth's space environment. The most computing intensive part is the MHD (magnetohydrodynamics) solver that models the plasma surrounding Earth and its interaction with Earth's magnetic field and the solar wind flowing in from the sun. Like other global magnetosphere codes, OpenGGCM's realism is limited by computational constraints on grid resolution. We investigate porting of the MHD solver to the Cell BE architecture, a novel inhomogeneous multicore architecture capable of up to 230 GFlops per processor. Realizing this high performance on the Cell processor is a programming challenge, though. We implemented the MHD solver using a multi-level parallel approach: On the coarsest level, the problem is distributed to processors based upon the usual domain decomposition approach. Then, on each processor, the problem is divided into 3D columns, each of which is handled by the memory limited SPEs (synergistic processing elements) slice by slice. Finally, SIMD instructions are used to fully exploit the vector/SIMD FPUs in each SPE. Memory management needs to be handled explicitly by the code, using DMA to move data from main memory to the per-SPE local store and vice versa. We obtained excellent performance numbers, a speed-up of a factor of 25 compared to just using the main processor, while still keeping the numerical implementation details of the code maintainable.

Stellar Streams in the Andromeda Halo

NASA Astrophysics Data System (ADS)

Fardal, Mark A.; PAndAS Collaboration

2011-05-01

The PAndAS survey detects RGB and AGB stars in our neighbor galaxy M31, out to 150 kpc from the galaxy center with an extension to M33. Maps of this survey display a spectacular collection of stellar streams extending tens to hundreds of kpc in length. Many of these streams overlap with each other or with M31's central regions, making it difficult to disentangle the different streams. I discuss what is currently known about the nature, origin, significance, and eventual fate of these stellar streams. Photometric observations from the PAndAS survey and follow-up work constrain the metallicity, age, luminosity, and stellar mass of the stellar population. I discuss scenarios for how some of these streams formed, while for others their origin remains a mystery. I present observationally constrained numerical simulations for the formation of some of the streams. The streams also are probes of the mass profile and lumpiness of M31's dark matter halo. Spectroscopic samples are used to constrain M31's halo mass at large radius.

Creating and Implementing Diverse Development Strategies to Support Extension Centers and Programs

ERIC Educational Resources Information Center

Page, Christopher S.; Kern, Michael A.

2018-01-01

Declining government funding for higher education requires colleges and universities to seek alternative revenue streams, including through philanthropic fund-raising. Extension-based subject matter centers and other programs can benefit from the thoughtful supplementation of traditional revenue sources with individual, corporate, and private…

An Extension Education Program to Help Local Governments with Flood Adaptation

ERIC Educational Resources Information Center

Gary, Gretchen; Allred, Shorna; LoGiudice, Elizabeth

2014-01-01

Education is an important tool to increase the capacity of local government officials for community flood adaptation. To address flood adaptation and post-flood stream management in municipalities, Cornell Cooperative Extension and collaborators developed an educational program to increase municipal officials' knowledge about how to work…

Simulation of ground-water flow of the coastal plain aquifers in parts of Maryland, Delaware, and the District of Columbia

USGS Publications Warehouse

Fleck, W.B.; Vroblesky, D.A.

1996-01-01

Geomorphic processes and the aquatic habitat of the Redwood Creek basin were studied extensively between 1973 and 1983. This volume contains 22 separate articles by 32 investigators who studied geology, major storms, timber harvesting and its role on accelerating erosion, mass movement, fluvial erosion, sediment transport and storage, stream channel response to storms and landuse, stream habitat, and stream chemistry. This research describes a rapidly eroding landscape that is sensitive to effects of both landuse and major storms.

Working with and Visualizing Big Data Efficiently with Python for the DARPA XDATA Program

DTIC Science & Technology

2017-08-01

same function to be used with scalar inputs, input arrays of the same shape, or even input arrays of dimensionality in some cases. Most of the math ... math operations on values ● Split-apply-combine: similar to group-by operations in databases ● Join: combine two datasets using common columns 4.3.3...Numba - Continue to increase SIMD performance with support for fast math flags and improved support for AVX, Intel’s large vector

Highly parallel computation

NASA Technical Reports Server (NTRS)

Denning, Peter J.; Tichy, Walter F.

1990-01-01

Highly parallel computing architectures are the only means to achieve the computation rates demanded by advanced scientific problems. A decade of research has demonstrated the feasibility of such machines and current research focuses on which architectures designated as multiple instruction multiple datastream (MIMD) and single instruction multiple datastream (SIMD) have produced the best results to date; neither shows a decisive advantage for most near-homogeneous scientific problems. For scientific problems with many dissimilar parts, more speculative architectures such as neural networks or data flow may be needed.

Parallel Computing:. Some Activities in High Energy Physics

NASA Astrophysics Data System (ADS)

Willers, Ian

This paper examines some activities in High Energy Physics that utilise parallel computing. The topic includes all computing from the proposed SIMD front end detectors, the farming applications, high-powered RISC processors and the large machines in the computer centers. We start by looking at the motivation behind using parallelism for general purpose computing. The developments around farming are then described from its simplest form to the more complex system in Fermilab. Finally, there is a list of some developments that are happening close to the experiments.

Selective, Embedded, Just-In-Time Specialization (SEJITS): Portable Parallel Performance from Sequential, Productive, Embedded Domain-Specific Languages

DTIC Science & Technology

2012-12-01

identity operation SIMD Single instruction, multiple datastream parallel computing Scala A byte-compiled programming language featuring dynamic type...Specific Languages 5a. CONTRACT NUMBER FA8750-10-1-0191 5b. GRANT NUMBER N/A 5c. PROGRAM ELEMENT NUMBER 61101E 6. AUTHOR(S) Armando Fox 5d...application performance, but usually must rely on efficiency programmers who are experts in explicit parallel programming to achieve it. Since such efficiency

SC'11 Poster: A Highly Efficient MGPT Implementation for LAMMPS; with Strong Scaling

DOE Office of Scientific and Technical Information (OSTI.GOV)

Oppelstrup, T; Stukowski, A; Marian, J

2011-12-07

The MGPT potential has been implemented as a drop in package to the general molecular dynamics code LAMMPS. We implement an improved communication scheme that shrinks the communication layer thickness, and increases the load balancing. This results in unprecedented strong scaling, and speedup continuing beyond 1/8 atom/core. In addition, we have optimized the small matrix linear algebra with generic blocking (for all processors) and specific SIMD intrinsics for vectorization on Intel, AMD, and BlueGene CPUs.

Lithological and fluvial controls on the geomorphology of tropical montane stream channels in Puerto Rico

Treesearch

Andrew S. Pike; F.N. Scatena; Ellen E. Wohl

2010-01-01

An extensive survey and topographic analysis of fi ve watersheds draining the Luquillo Mountains in north-eastern Puerto Rico was conducted to decouple the relative infl uences of lithologic and hydraulic forces in shaping the morphology of tropical montane stream channels. The Luquillo Mountains are a steep landscape composed of volcaniclastic and igneous rocks that...

The role of the geophysical template and environmental regimes in controlling stream-living trout populations

Treesearch

Brooke E. Penaluna; Steve F. Railsback; Jason B. Dunham; Sherri Johnson; Robert E. Bilby; Arne E. Skaugset; Michael Bradford

2015-01-01

The importance of multiple processes and instream factors to aquatic biota has been explored extensively, but questions remain about how local spatiotemporal variability of aquatic biota is tied to environmental regimes and the geophysical template of streams. We used an individual-based trout model to explore the relative role of the geophysical template versus...

In-stream wetlands and their significance for channel filling and the catchment sediment budget, Jugiong Creek, New South Wales

NASA Astrophysics Data System (ADS)

Zierholz, C.; Prosser, I. P.; Fogarty, P. J.; Rustomji, P.

2001-06-01

Evidence is presented here of recent and extensive infilling of the incised channel network of the Jugiong Creek catchment, SE Australia. The present channel network resulted from widespread stream and gully incision in the period between 1880 and 1920. Our survey shows that gully floors have been colonised extensively by emergent macrophyte vegetation since before 1944, forming continuous, dense, in-stream wetlands, which now cover 25% of the channel network in the 2175 km 2 catchment and have so far trapped almost 2,000,000 t of nutrient-enriched, fine sediments. This mass of sediments represents the equivalent of 4.7 years of annual sediment production across the catchment and in some tributaries, more than 20 years of annual yield is stored within in-stream wetlands. Previous work on the late Quaternary stratigraphy of the region has shown that there were repeated phases of channel incision in the past following which the channels quickly stabilised by natural means and then filled with fine-grained sediment to the point of channel extinction, creating unchannelled swampy valley floors. The current formation and spread of in-stream wetlands is interpreted to be the onset of the next infill phase but it is not known whether present conditions will allow complete channel filling and reformation of the pre-existing swampy valley floors. Nevertheless, further spread of in-stream wetlands is likely to increase the sediment trapping capacity and further reduce the discharge of sediments and nutrients into the Murrumbidgee River. The in-stream wetlands may provide a significant capacity to buffer erosion from gullied catchments of considerable size (up to 300 km 2) as an adjunct to current riparian management options. They may also assist the recovery of sediment-impacted channels downstream.

Biological effect of low-head sea lamprey barriers: Designs for extensive surveys and the value of incorporating intensive process-oriented research

USGS Publications Warehouse

Hayes, D.B.; Baylis, J.R.; Carl, L.M.; Dodd, H.R.; Goldstein, J.D.; McLaughlin, R.L.; Noakes, D.L.G.; Porto, L.M.

2003-01-01

Four sampling designs for quantifying the effect of low-head sea lamprey (Petromyzon marinus) barriers on fish communities were evaluated, and the contribution of process-oriented research to the overall confidence of results obtained was discussed. The designs include: (1) sample barrier streams post-construction; (2) sample barrier and reference streams post-construction; (3) sample barrier streams pre- and post-construction; and (4) sample barrier and reference streams pre- and post-construction. In the statistical literature, the principal basis for comparison of sampling designs is generally the precision achieved by each design. In addition to precision, designs should be compared based on the interpretability of results and on the scale to which the results apply. Using data collected in a broad survey of streams with and without sea lamprey barriers, some of the tradeoffs that occur among precision, scale, and interpretability are illustrated. Although circumstances such as funding and availability of pre-construction data may limit which design can be implemented, a pre/post-construction design including barrier and reference streams provides the most meaningful information for use in barrier management decisions. Where it is not feasible to obtain pre-construction data, a design including reference streams is important to maintain the interpretability of results. Regardless of the design used, process-oriented research provides a framework for interpreting results obtained in broad surveys. As such, information from both extensive surveys and intensive process-oriented research provides the best basis for fishery management actions, and gives researchers and managers the most confidence in the conclusions reached regarding the effects of sea lamprey barriers.

Iodine Pathways and Off-Gas Stream Characteristics for Aqueous Reprocessing Plants – A Literature Survey and Assessment

DOE Office of Scientific and Technical Information (OSTI.GOV)

R. T. Jubin; D. M. Strachan; N. R. Soelberg

2013-09-01

Used nuclear fuel is currently being reprocessed in only a few countries, notably France, England, Japan, and Russia. The need to control emissions of the gaseous radionuclides to the air during nuclear fuel reprocessing has already been reported for the entire plant. But since the gaseous radionuclides can partition to various different reprocessing off-gas streams, for example, from the head end, dissolver, vessel, cell, and melter, an understanding of each of these streams is critical. These off-gas streams have different flow rates and compositions and could have different gaseous radionuclide control requirements, depending on how the gaseous radionuclides partition. Thismore » report reviews the available literature to summarize specific engineering data on the flow rates, forms of the volatile radionuclides in off-gas streams, distributions of these radionuclides in these streams, and temperatures of these streams. This document contains an extensive bibliography of the information contained in the open literature.« less

Lead isotopic compositions of common arsenical pesticides used in New England

USGS Publications Warehouse

Ayuso, Robert; Foley, Nora; Robinson, Gilpin; Wandless, Gregory; Dillingham, Jeremy

2004-01-01

The three most important arsenical pesticides and herbicides that were extensively used on apple, blueberry, and potato crops in New England from mid-1800s to recent times are lead arsenate, calcium arsenate, and sodium arsenate. Lead arsenate was probably the most heavily used of the arsenical pesticides until it was banned in 1988. Other metal-arsenic pesticides were also used but in lesser amounts. A recent report identified areas in New England where arsenical pesticides were used extensively (Robinson and Ayuso, 2004). On the basis of factor analysis of metal concentrations in stream sediment samples, a positive correlation with pesticide use was shown in regions having stream sediment sample populations that contained concentrations of high arsenic and lead. Lead isotope compositions of stream sediments from areas with heavy use of the pesticides could not be entirely explained by lead originating from rock sulfides and their weathering products. An industrial lead contribution (mostly from atmospheric deposition of lead) was suggested in general to explain the lead isotopic distributions of the stream sediments that could not be accounted for by the natural lead in the environment. We concluded that when agricultural land previously contaminated with arsenical pesticides is urbanized, pesticide residues in the soils and stream sediments could be released into the groundwater. No lead isotopic data characterizing the compositions of pesticides were available for comparison. We have determined the lead isotopic compositions of commonly used pesticides in New England, such as lead arsenate, sodium metaarsenite, and calcium arsenate, in order to assist in future isotopic comparisons and to better establish anthropogenic sources of Pb and As. New data are also presented for copper acetoarsenite (or Paris green), methyl arsonic acid and methane arsonic acid, as well as for arsanilic acid, all of which are used as feed additives to promote swine and poultry growth. The new data characterize these anthropogenic sources. The data show that the arsenical pesticides have similar compositions: 208Pb/207Pb = 2.3839-2.4721, 206Pb/207Pb = 1.1035-1.2010, and 206Pb/204Pb = 17.070-18.759 and, more importantly, that the pesticides overlap the composition of the stream sediments that represent the areas with the most extensive agricultural use. Copper acetoarsenite (Paris green), arsenic oxide, methyl arsonic acid, methane arsonic acid, and arsanilic acid were also analyzed and have lead isotope compositions that range widely. An important source of arsenic and metals to most of the stream sediment samples in New England appears to be weathering products from rocks and industrial lead, but the extensive use of arsenical pesticides and herbicides up to about the 1960s can also be a significant anthropogenic source in agricultural regions.

Movement, demographics, and occupancy dynamics of a federally-threatened salamander: evaluating the adequacy of critical habitat

PubMed Central

McEntire, Kira D.; Sissel, Blake N.

2016-01-01

Critical habitat for many species is often limited to occupied localities. For rare and cryptic species, or those lacking sufficient data, occupied habitats may go unrecognized, potentially hindering species recovery. Proposed critical habitat for the aquatic Jollyville Plateau salamander (Eurycea tonkawae) and two sister species were delineated based on the assumption that surface habitat is restricted to springs and excludes intervening stream reaches. To test this assumption, we performed two studies to understand aspects of individual, population, and metapopulation ecology of E. tonkawae. First, we examined movement and population demographics using capture-recapture along a spring-influenced stream reach. We then extended our investigation of stream habitat use with a study of occupancy and habitat dynamics in multiple headwater streams. Indications of extensive stream channel use based on capture-recapture results included frequent movements of >15 m, and high juvenile abundance downstream of the spring. Initial occupancy of E. tonkawae was associated with shallow depths, maidenhair fern presence and low temperature variation (indicative of groundwater influence), although many occupied sites were far from known springs. Additionally, previously dry sites were three times more likely to be colonized than wet sites. Our results indicate extensive use of stream habitats, including intermittent ones, by E. tonkawae. These areas may be important for maintaining population connectivity or even as primary habitat patches. Restricting critical habitat to occupied sites will result in a mismatch with actual habitat use, particularly when assumptions of habitat use are untested, thus limiting the potential for recovery. PMID:26998413

Downstream reduction of rural channel size with contrasting urban effects in small coastal streams of southeastern Australia

NASA Astrophysics Data System (ADS)

Nanson, G. C.; Young, R. W.

1981-07-01

Although most streams show a downstream increase in channel size corresponding to a downstream increase in flood discharges, those flowing off the Illawarra escarpment of New South Wales show a marked reduction of channel size, accompanied by a down-stream increase in flood frequency in their lower reaches. Within the confined and steeply sloping valleys of the escarpment foothills, bed and bank sediments are relatively coarse and uncohesive, and channels increase in size, corresponding to increasing discharge downstream. However, once these streams emerge into more open rural valleys at lower slopes and are accompanied by extensive floodplains formed of fine cohesive sediment, there is a dramatic reduction in channel size. This decrease in channel size apparently results from a sudden decline in channel slope and associated stream power, the cohesive nature of downstream alluvium, its retention on the channel banks by a dense cover of pasture grasses, and the availability of an extensive floodplain to carry displaced floodwater. Under these conditions floodwaters very frequently spill out over the floodplain and the downstream channel-flow becomes a relatively unimportant component of the total peak discharge. This emphasizes the importance of these floodplains as a part of the total channel system. In situations where urban development has increased peak runoff and reduced the available area of effective floodplain, stream channels formed in this fine alluvium rapidly entrench and increase in cross-sectional area by 2-3 times. Minor man-induced channel alteration and maintenance appears to trigger this enlargement.

Evaluation of in-network adaptation of scalable high efficiency video coding (SHVC) in mobile environments

NASA Astrophysics Data System (ADS)

Nightingale, James; Wang, Qi; Grecos, Christos; Goma, Sergio

2014-02-01

High Efficiency Video Coding (HEVC), the latest video compression standard (also known as H.265), can deliver video streams of comparable quality to the current H.264 Advanced Video Coding (H.264/AVC) standard with a 50% reduction in bandwidth. Research into SHVC, the scalable extension to the HEVC standard, is still in its infancy. One important area for investigation is whether, given the greater compression ratio of HEVC (and SHVC), the loss of packets containing video content will have a greater impact on the quality of delivered video than is the case with H.264/AVC or its scalable extension H.264/SVC. In this work we empirically evaluate the layer-based, in-network adaptation of video streams encoded using SHVC in situations where dynamically changing bandwidths and datagram loss ratios require the real-time adaptation of video streams. Through the use of extensive experimentation, we establish a comprehensive set of benchmarks for SHVC-based highdefinition video streaming in loss prone network environments such as those commonly found in mobile networks. Among other results, we highlight that packet losses of only 1% can lead to a substantial reduction in PSNR of over 3dB and error propagation in over 130 pictures following the one in which the loss occurred. This work would be one of the earliest studies in this cutting-edge area that reports benchmark evaluation results for the effects of datagram loss on SHVC picture quality and offers empirical and analytical insights into SHVC adaptation to lossy, mobile networking conditions.

Effects of urban stream burial on nitrogen uptake and ...

EPA Pesticide Factsheets

Urbanization has resulted in extensive burial and channelization of headwater streams, yet little is known about impacts on stream ecosystem functions critical for reducing downstream nitrogen pollution. To characterize the biogeochemical impact of stream burial, we measured NO3- uptake, using 15N-NO3- isotope tracer releases, and whole stream metabolism, during four seasons in three paired buried and open streams reaches within the Baltimore Ecosystem Study Long-term Ecological Research Network. Stream burial increased NO3- uptake lengths, by a factor of 7.5 (p < 0.01) and decreased nitrate uptake velocity and areal nitrate uptake rate by factors of 8.2 (p = 0.01) and 9.6 (p < 0.001), respectively. Stream burial decreased gross primary productivity by a factor of 9.2 (p < 0.05) and decreased ecosystem respiration by a factor of 4.2 (p = 0.06). From statistical analysis of Excitation Emissions Matrices (EEMs), buried streams were also found to have significantly less labile dissolved organic matter. Furthermore, buried streams had significantly lower transient storage and water temperatures. Overall, differences in NO3- uptake and metabolism were primarily explained by decreased transient storage and light availability in buried streams. We estimate that stream burial increases daily watershed nitrate export by as much as 500% due to decreased in-stream retention and may considerably decrease carbon export via decreased primary production. These results

The Midwest Stream Quality Assessment—Influences of human activities on streams

USGS Publications Warehouse

Van Metre, Peter C.; Mahler, Barbara J.; Carlisle, Daren M.; Coles, James F.

2018-04-16

Healthy streams and the fish and other organisms that live in them contribute to our quality of life. Extensive modification of the landscape in the Midwestern United States, however, has profoundly affected the condition of streams. Row crops and pavement have replaced grasslands and woodlands, streams have been straightened, and wetlands and fields have been drained. Runoff from agricultural and urban land brings sediment and chemicals to streams. What is the chemical, physical, and biological condition of Midwestern streams? Which physical and chemical stressors are adversely affecting biological communities, what are their origins, and how might we lessen or avoid their adverse effects?In 2013, the U.S. Geological Survey (USGS) conducted the Midwest Stream Quality Assessment to evaluate how human activities affect the biological condition of Midwestern streams. In collaboration with the U.S. Environmental Protection Agency National Rivers and Streams Assessment, the USGS sampled 100 streams, chosen to be representative of the different types of watersheds in the region. Biological condition was evaluated based on the number and diversity of fish, algae, and invertebrates in the streams. Changes to the physical habitat and chemical characteristics of the streams—“stressors”—were assessed, and their relation to landscape factors and biological condition was explored by using mathematical models. The data and models help us to better understand how the human activities on the landscape are affecting streams in the region.

Missileborne Artificial Vision System (MAVIS)

NASA Technical Reports Server (NTRS)

Andes, David K.; Witham, James C.; Miles, Michael D.

1994-01-01

Several years ago when INTEL and China Lake designed the ETANN chip, analog VLSI appeared to be the only way to do high density neural computing. In the last five years, however, digital parallel processing chips capable of performing neural computation functions have evolved to the point of rough equality with analog chips in system level computational density. The Naval Air Warfare Center, China Lake, has developed a real time, hardware and software system designed to implement and evaluate biologically inspired retinal and cortical models. The hardware is based on the Adaptive Solutions Inc. massively parallel CNAPS system COHO boards. Each COHO board is a standard size 6U VME card featuring 256 fixed point, RISC processors running at 20 MHz in a SIMD configuration. Each COHO board has a companion board built to support a real time VSB interface to an imaging seeker, a NTSC camera, and to other COHO boards. The system is designed to have multiple SIMD machines each performing different corticomorphic functions. The system level software has been developed which allows a high level description of corticomorphic structures to be translated into the native microcode of the CNAPS chips. Corticomorphic structures are those neural structures with a form similar to that of the retina, the lateral geniculate nucleus, or the visual cortex. This real time hardware system is designed to be shrunk into a volume compatible with air launched tactical missiles. Initial versions of the software and hardware have been completed and are in the early stages of integration with a missile seeker.

Parasail: SIMD C library for global, semi-global, and local pairwise sequence alignments

DOE Office of Scientific and Technical Information (OSTI.GOV)

Daily, Jeffrey A.

Sequence alignment algorithms are a key component of many bioinformatics applications. Though various fast Smith-Waterman local sequence alignment implementations have been developed for x86 CPUs, most are embedded into larger database search tools. In addition, fast implementations of Needleman-Wunsch global sequence alignment and its semi-global variants are not as widespread. This article presents the first software library for local, global, and semi-global pairwise intra-sequence alignments and improves the performance of previous intra-sequence implementations. As a result, a faster intra-sequence pairwise alignment implementation is described and benchmarked. Using a 375 residue query sequence a speed of 136 billion cell updates permore » second (GCUPS) was achieved on a dual Intel Xeon E5-2670 12-core processor system, the highest reported for an implementation based on Farrar’s ’striped’ approach. When using only a single thread, parasail was 1.7 times faster than Rognes’s SWIPE. For many score matrices, parasail is faster than BLAST. The software library is designed for 64 bit Linux, OS X, or Windows on processors with SSE2, SSE41, or AVX2. Source code is available from https://github.com/jeffdaily/parasail under the Battelle BSD-style license. In conclusion, applications that require optimal alignment scores could benefit from the improved performance. For the first time, SIMD global, semi-global, and local alignments are available in a stand-alone C library.« less

Parasail: SIMD C library for global, semi-global, and local pairwise sequence alignments

DOE PAGES

Daily, Jeffrey A.

2016-02-10

Sequence alignment algorithms are a key component of many bioinformatics applications. Though various fast Smith-Waterman local sequence alignment implementations have been developed for x86 CPUs, most are embedded into larger database search tools. In addition, fast implementations of Needleman-Wunsch global sequence alignment and its semi-global variants are not as widespread. This article presents the first software library for local, global, and semi-global pairwise intra-sequence alignments and improves the performance of previous intra-sequence implementations. As a result, a faster intra-sequence pairwise alignment implementation is described and benchmarked. Using a 375 residue query sequence a speed of 136 billion cell updates permore » second (GCUPS) was achieved on a dual Intel Xeon E5-2670 12-core processor system, the highest reported for an implementation based on Farrar’s ’striped’ approach. When using only a single thread, parasail was 1.7 times faster than Rognes’s SWIPE. For many score matrices, parasail is faster than BLAST. The software library is designed for 64 bit Linux, OS X, or Windows on processors with SSE2, SSE41, or AVX2. Source code is available from https://github.com/jeffdaily/parasail under the Battelle BSD-style license. In conclusion, applications that require optimal alignment scores could benefit from the improved performance. For the first time, SIMD global, semi-global, and local alignments are available in a stand-alone C library.« less

Two-dimensional lattice Boltzmann model for magnetohydrodynamics.

PubMed

Schaffenberger, Werner; Hanslmeier, Arnold

2002-10-01

We present a lattice Boltzmann model for the simulation of two-dimensional magnetohydro dynamic (MHD) flows. The model is an extension of a hydrodynamic lattice Boltzman model with 9 velocities on a square lattice resulting in a model with 17 velocities. Earlier lattice Boltzmann models for two-dimensional MHD used a bidirectional streaming rule. However, the use of such a bidirectional streaming rule is not necessary. In our model, the standard streaming rule is used, allowing smaller viscosities. To control the viscosity and the resistivity independently, a matrix collision operator is used. The model is then applied to the Hartmann flow, giving reasonable results.

Benthic invertebrate assemblages and their relation to physical and chemical characteristics of streams in the Eastern Iowa Basins, 1996-98

USGS Publications Warehouse

Brigham, Allison R.; Sadorf, Eric M.

2001-01-01

Stream size, a reflection of basin area, was a principal influence in categorizing the benthic invertebrate assemblages, with sites that have the largest basin areas forming a separate group. Although it is difficult to distinguish among the contributions of large basin area, increased concentrations of nutrients and pesticides, and decreasing instream habitat diversity, the resulting invertebrate assemblage described was distinct. The remaining sites were headwater or tributary streams that reflected conditions more common to smaller streams, such as higher gradients and the potential for more diverse or extensive riparian habitat, but were distinguished by landform. Following basin area in importance, landform contributed to the differences observed among the benthic invertebrate communities at the remaining sites.

Access to chlamydia testing in remote and rural Scotland.

PubMed

Hawkins, Katherine E; Thompson, Lucy; Wilson, Philip

2016-01-01

The aim of this study was to assess access to sexual health care in remote and rural settings using Chlamydia testing as a focus by measuring the extent of Chlamydia testing and positivity across the Scottish Highlands in relation to the Scottish Index of Multiple Deprivation Quintile (SIMD) and Urban Rural 8-fold index (UR8). Tests processed through Raigmore Hospital in Inverness, the main testing laboratory for microbiology tests in North and West and South and Mid Highlands, were studied. Where people are tested in relation to where they live was assessed, as well as the type of test they opt for. Also assessed was the rate of positivity in male and female patients in rural compared with urban settings using the Scottish Government UR8 and in relation to the SIMD. 9644 results were analysed. 77.2% of the results were for females and 22.4% for males. 8.1% of the results were positive and 84.4% were negative. There were proportionately more positive tests from the sexual health sources than from general practice. The proportion of men who had positive tests was almost double that for women (12.7% vs 6.6%) although men made up only 27.9% of the total number of tests. There was no significant difference in positivity when compared with UR8 index or SIMD. 37.7% of people living in the most rural areas (UR8 7-8) had their test performed in a more urban setting (UR8 1-6), and 20.4% people had their test performed in a very urban setting (UR8 1-2). Of these tests, there was a tendency for UR8 7-8 patients to be more likely to have a positive test if tested in an urban setting. These results are similar to previous results in other countries that suggest that Chlamydia positivity is similar in rural and urban settings. A large proportion of people living in more rurally classified areas, and perhaps those with a higher risk, have their test in a central setting, suggesting that they may be bypassing local resources to get a test. The reason for this is not clear. The results also show that men are more likely to have their test in a genitourinary setting as well as have proportionately more positive results. These results support the case for customising sexual health services to the most rural areas and suggest that providing an anonymous testing service in these areas might be beneficial, especially for men.

The role of the geophysical template and environmental regimes in controlling stream-living trout populations

USGS Publications Warehouse

Penaluna, Brooke E.; Railsback, Steve F.; Dunham, Jason B.; Johnson, S.; Bilby, Richard E.; Skaugset, Arne E.

2015-01-01

The importance of multiple processes and instream factors to aquatic biota has been explored extensively, but questions remain about how local spatiotemporal variability of aquatic biota is tied to environmental regimes and the geophysical template of streams. We used an individual-based trout model to explore the relative role of the geophysical template versus environmental regimes on biomass of trout (Oncorhynchus clarkii clarkii). We parameterized the model with observed data from each of the four headwater streams (their local geophysical template and environmental regime) and then ran 12 simulations where we replaced environmental regimes (stream temperature, flow, turbidity) of a given stream with values from each neighboring stream while keeping the geophysical template fixed. We also performed single-parameter sensitivity analyses on the model results from each of the four streams. Although our modeled findings show that trout biomass is most responsive to changes in the geophysical template of streams, they also reveal that biomass is restricted by available habitat during seasonal low flow, which is a product of both the stream’s geophysical template and flow regime. Our modeled results suggest that differences in the geophysical template among streams render trout more or less sensitive to environmental change, emphasizing the importance of local fish–habitat relationships in streams.

Internet stream synchronization using Concord

NASA Astrophysics Data System (ADS)

Sreenan, Cormac J.; Narendran, B.; Agrawal, Prathima; Shivakumar, Narayanan

1996-03-01

Using packet networks to transport multimedia introduces delay variations within and across streams, necessitating synchronization at the receiver. This requires stream data to be buffered prior to presentation, which also increases its total end to end delay. Concord recognizes that applications may wish to influence the underlying synchronization policy in terms of its effect on quality of service. It provides a single framework for synchronization within and across streams and employs an application specific tradeoff between packet losses, delay and inter- stream skew. We present a new predictive approach for synchronization and a selection of results from an extensive evaluation of Concord for use in the Internet. A trace driven simulator is used, allowing a direct comparison with alternative approaches. We demonstrate that Concord can operate with lower maximum delay and less variation in total end to end delay, which in turn can allow receiver buffer requirements to be reduced.

Sources and preparation of data for assessing trends in concentrations of pesticides in streams of the United States, 1992-2006

USGS Publications Warehouse

Martin, Jeffrey D.

2009-01-01

This report provides a water-quality data set of 44 commonly used pesticides and 8 pesticide degradates suitable for a national assessment of trends in pesticide concentrations in streams of the United States. Water-quality samples collected from January 1992 through August 2006 at stream-water sites of the U.S. Geological Survey National Water-Quality Assessment Program and the National Stream Quality Accounting Network Program were compiled, reviewed, selected, and prepared for trend analysis as described in this report. Samples analyzed at the U.S. Geological Survey National Water Quality Laboratory by a gas chromatography/mass spectrometry analytical method were the most extensive in time and space and were selected for national trend analysis. The selection criteria described in the report produced a trend data set of 16,869 pesticide samples at 201 stream and river sites.

Online feature selection with streaming features.

PubMed

Wu, Xindong; Yu, Kui; Ding, Wei; Wang, Hao; Zhu, Xingquan

2013-05-01

We propose a new online feature selection framework for applications with streaming features where the knowledge of the full feature space is unknown in advance. We define streaming features as features that flow in one by one over time whereas the number of training examples remains fixed. This is in contrast with traditional online learning methods that only deal with sequentially added observations, with little attention being paid to streaming features. The critical challenges for Online Streaming Feature Selection (OSFS) include 1) the continuous growth of feature volumes over time, 2) a large feature space, possibly of unknown or infinite size, and 3) the unavailability of the entire feature set before learning starts. In the paper, we present a novel Online Streaming Feature Selection method to select strongly relevant and nonredundant features on the fly. An efficient Fast-OSFS algorithm is proposed to improve feature selection performance. The proposed algorithms are evaluated extensively on high-dimensional datasets and also with a real-world case study on impact crater detection. Experimental results demonstrate that the algorithms achieve better compactness and higher prediction accuracy than existing streaming feature selection algorithms.

Nonlinear Wave Simulation on the Xeon Phi Knights Landing Processor

NASA Astrophysics Data System (ADS)

Hristov, Ivan; Goranov, Goran; Hristova, Radoslava

2018-02-01

We consider an interesting from computational point of view standing wave simulation by solving coupled 2D perturbed Sine-Gordon equations. We make an OpenMP realization which explores both thread and SIMD levels of parallelism. We test the OpenMP program on two different energy equivalent Intel architectures: 2× Xeon E5-2695 v2 processors, (code-named "Ivy Bridge-EP") in the Hybrilit cluster, and Xeon Phi 7250 processor (code-named "Knights Landing" (KNL). The results show 2 times better performance on KNL processor.

NPS-NRL-Rice-UIUC Collaboration on Navy Atmosphere-Ocean Coupled Models on Many-Core Computer Architectures Annual Report

DTIC Science & Technology

2014-09-30

portability is difficult to achieve on future supercomputers that use various type of accelerators (GPUs, Xeon - Phi , and SIMD etc). All of these...bottlenecks of NUMA. For example, in the CG code the state vector was originally stored as q(1 : Nvar ,1 : Npoin) where Nvar are the number of...a Global Grid Point (GGP) storage. On the other hand, in the DG code the state vector is typically stored as q(1 : Nvar ,1 : Npts,1 : Nelem) where

Filling Gaps in Biogeochemical Understanding of Wildfire Effects on Watersheds and Water Quality

NASA Astrophysics Data System (ADS)

Rhoades, Charles; Covino, Timothy; Chow, Alex

2017-04-01

Large, high-severity wildfires alter the biogeochemical conditions that determine how watersheds retain and release nutrients and influence stream water quality. These effects are commonly expected to abate within a few years, but recent studies show that post-fire watershed changes can have persistent, but poorly-understood biogeochemical consequences. Owing to the increased frequency and extent of high-severity wildfires predicted for western North America, and the growing awareness of the links between wildfire and clean water supply, there is a need to address these knowledge gaps. For the past 15 years we have tracked stream nutrients, chemistry, temperature, and sediment after the 2002 Hayman Fire, the largest wildfire in Colorado history. Our earlier work showed that headwater catchments that experienced extensive, high-severity forest fires had elevated stream nitrate, temperature, and turbidity for five post-fire years. Recent sampling, conducted 13 and 14 years after the fire, found that turbidity had largely returned to pretreatment levels, but that stream nitrate remained an order of magnitude above pre-fire levels in catchments with extensive high-severity wildfire. Stream temperature and total dissolved nitrogen concentration also remained higher in those catchments compared to unburned streams. Decreased plant demand is the mechanism commonly credited for post-fire nutrient losses, though our current work is evaluating the implications of soil and stream nutrient uptake and supply on persistent nitrogen (N) export from severely-burned catchments. For example, we have measured higher total soil N and higher net N mineralization in severely-burned portions of the Hayman Fire compared to moderately or unburned areas, indicating that higher soil N supply may contribute to N losses from upland soils. Conversely, using a nutrient tracer approach we found reduced N uptake in burned streams, which suggests a switch from the N-limited conditions typical of pristine catchments. Low stream dissolved organic carbon (DOC) in severely-burned catchments suggests greater carbon limitation on in-stream biological activity. This is the likely result of organic matter losses during the wildfire compounded by low allochthonous inputs from uplands or riparian zones. We also find that catchments with severely-burned headwater reaches and sparse riparian vegetation have high stream nitrate. Our findings regarding soil N supply and in-stream N retention coupled with the persistent N losses from burned headwaters and exposed riparian zones help prioritize restoration efforts aimed at mitigating long-term water quality effects of severe wildfires.

Capacitance probe for fluid flow and volume measurements

NASA Technical Reports Server (NTRS)

Arndt, G. Dickey (Inventor); Nguyen, Thanh X. (Inventor); Carl, James R. (Inventor)

1995-01-01

Method and apparatus for making measurements on fluids are disclosed, including the use of a capacitive probe for measuring the flow volume of a material within a flow stream. The capacitance probe has at least two elongate electrodes and, in a specific embodiment of the invention, has three parallel elongate electrodes with the center electrode being an extension of the center conductor of a co-axial cable. A conductance probe is also provided to provide more accurate flow volume data in response to conductivity of the material within the flow stream. A preferred embodiment of the present invention provides for a gas flow stream through a microgravity environment that allows for monitoring a flow volume of a fluid sample, such as a urine sample, that is entrained within the gas flow stream.

Capacitance Probe for Fluid Flow and Volume Measurements

NASA Technical Reports Server (NTRS)

Arndt, G. Dickey (Inventor); Nguyen, Thanh X. (Inventor); Carl, James R. (Inventor)

1997-01-01

Method and apparatus for making measurements on fluids are disclosed, including the use of a capacitive probe for measuring the flow volume of a material within a flow stream. The capacitance probe has at least two elongate electrodes and, in a specific embodiment of the invention, has three parallel elongate electrodes with the center electrode being an extension of the center conductor of a co-axial cable. A conductance probe is also provided to provide more accurate flow volume data in response to conductivity of the material within the flow stream. A preferred embodiment of the present invention provides for a gas flow stream through a micro-gravity environment that allows for monitoring a flow volume of a fluid sample, such as a urine sample, that is entrained within the gas flow stream.

Application of the theory of jet stream to the asteroidal belt

NASA Technical Reports Server (NTRS)

Ip, W.-H.

1975-01-01

The possibility of incorporating the resonant effect and jet stream formation process into the problems of the Hilda asteroids and Kirkwood gaps is discussed qualitatively. It appears that formation of the precursor jet streams of the resonant asteroids in the main belt would be suppressed due to the collisional perturbation effect of the ambient matter in this region. Together with the biased distribution of near-resonant asteroids, the depletion across the Kirkwood gaps could be understood. Within the context of jet stream theory the existence of Hilda asteroids outside the main belt requires the original limit of the main belt to be not much more extensive than the present value of 3.5 AU. This is suggestive of a cosmogonic origin of the observed outer limit.

A FAST ITERATIVE METHOD FOR SOLVING THE EIKONAL EQUATION ON TRIANGULATED SURFACES*

PubMed Central

Fu, Zhisong; Jeong, Won-Ki; Pan, Yongsheng; Kirby, Robert M.; Whitaker, Ross T.

2012-01-01

This paper presents an efficient, fine-grained parallel algorithm for solving the Eikonal equation on triangular meshes. The Eikonal equation, and the broader class of Hamilton–Jacobi equations to which it belongs, have a wide range of applications from geometric optics and seismology to biological modeling and analysis of geometry and images. The ability to solve such equations accurately and efficiently provides new capabilities for exploring and visualizing parameter spaces and for solving inverse problems that rely on such equations in the forward model. Efficient solvers on state-of-the-art, parallel architectures require new algorithms that are not, in many cases, optimal, but are better suited to synchronous updates of the solution. In previous work [W. K. Jeong and R. T. Whitaker, SIAM J. Sci. Comput., 30 (2008), pp. 2512–2534], the authors proposed the fast iterative method (FIM) to efficiently solve the Eikonal equation on regular grids. In this paper we extend the fast iterative method to solve Eikonal equations efficiently on triangulated domains on the CPU and on parallel architectures, including graphics processors. We propose a new local update scheme that provides solutions of first-order accuracy for both architectures. We also propose a novel triangle-based update scheme and its corresponding data structure for efficient irregular data mapping to parallel single-instruction multiple-data (SIMD) processors. We provide detailed descriptions of the implementations on a single CPU, a multicore CPU with shared memory, and SIMD architectures with comparative results against state-of-the-art Eikonal solvers. PMID:22641200

Post-middle Miocene origin of modern landforms in the eastern Piedmont of Virginia

USGS Publications Warehouse

Weems, R.E.; Edwards, L.E.

2007-01-01

Diverse late middle Miocene dinoflagellate floras, obtained from two sites along the western edge of the Atlantic Coastal Plain in central Virginia, indicate that the eastern Virginia Piedmont was covered by marine waters about 12-13 Ma. This transgression extended farther westward across the Virginia Piedmont than any other transgression that has been documented. Extensive fluvial deposits that may be associated with this transgression covered earlier stream patterns in the eastern Piedmont and buried them beneath a thin (probably less than 100 foot-thick) veneer of sand and gravel. During the subsequent regression, a linear down-slope stream-drainage pattern developed. Although it has been somewhat modified by later stream captures, it still is easily recognizable. This interval of marine inundation and deposition explains why modern stream patterns in the eastern Piedmont of Virginia strongly resemble the stream patterns in the Coastal Plain and differ from the structurally adjusted trellis stream patterns typical of the western Piedmont, Blue Ridge, and Valley and Ridge regions. Uplift of the modern Southern Appalachian Mountains began at the time of this transgression and was largely completed by the late Pliocene.

An efficient and portable SIMD algorithm for charge/current deposition in Particle-In-Cell codes

DOE PAGES

Vincenti, H.; Lobet, M.; Lehe, R.; ...

2016-09-19

In current computer architectures, data movement (from die to network) is by far the most energy consuming part of an algorithm (≈20pJ/word on-die to ≈10,000 pJ/word on the network). To increase memory locality at the hardware level and reduce energy consumption related to data movement, future exascale computers tend to use many-core processors on each compute nodes that will have a reduced clock speed to allow for efficient cooling. To compensate for frequency decrease, machine vendors are making use of long SIMD instruction registers that are able to process multiple data with one arithmetic operator in one clock cycle. SIMD registermore » length is expected to double every four years. As a consequence, Particle-In-Cell (PIC) codes will have to achieve good vectorization to fully take advantage of these upcoming architectures. In this paper, we present a new algorithm that allows for efficient and portable SIMD vectorization of current/charge deposition routines that are, along with the field gathering routines, among the most time consuming parts of the PIC algorithm. Our new algorithm uses a particular data structure that takes into account memory alignment constraints and avoids gather/scat;ter instructions that can significantly affect vectorization performances on current CPUs. The new algorithm was successfully implemented in the 3D skeleton PIC code PICSAR and tested on Haswell Xeon processors (AVX2-256 bits wide data registers). Results show a factor of ×2 to ×2.5 speed-up in double precision for particle shape factor of orders 1–3. The new algorithm can be applied as is on future KNL (Knights Landing) architectures that will include AVX-512 instruction sets with 512 bits register lengths (8 doubles/16 singles). Program summary Program Title: vec_deposition Program Files doi:http://dx.doi.org/10.17632/nh77fv9k8c.1 Licensing provisions: BSD 3-Clause Programming language: Fortran 90 External routines/libraries:  OpenMP > 4.0 Nature of problem: Exascale architectures will have many-core processors per node with long vector data registers capable of performing one single instruction on multiple data during one clock cycle. Data register lengths are expected to double every four years and this pushes for new portable solutions for efficiently vectorizing Particle-In-Cell codes on these future many-core architectures. One of the main hotspot routines of the PIC algorithm is the current/charge deposition for which there is no efficient and portable vector algorithm. Solution method: Here we provide an efficient and portable vector algorithm of current/charge deposition routines that uses a new data structure, which significantly reduces gather/scatter operations. Vectorization is controlled using OpenMP 4.0 compiler directives for vectorization which ensures portability across different architectures. Restrictions: Here we do not provide the full PIC algorithm with an executable but only vector routines for current/charge deposition. These scalar/vector routines can be used as library routines in your 3D Particle-In-Cell code. However, to get the best performances out of vector routines you have to satisfy the two following requirements: (1) Your code should implement particle tiling (as explained in the manuscript) to allow for maximized cache reuse and reduce memory accesses that can hinder vector performances. The routines can be used directly on each particle tile. (2) You should compile your code with a Fortran 90 compiler (e.g Intel, gnu or cray) and provide proper alignment flags and compiler alignment directives (more details in README file).« less

An efficient and portable SIMD algorithm for charge/current deposition in Particle-In-Cell codes

DOE Office of Scientific and Technical Information (OSTI.GOV)

Vincenti, H.; Lobet, M.; Lehe, R.

In current computer architectures, data movement (from die to network) is by far the most energy consuming part of an algorithm (≈20pJ/word on-die to ≈10,000 pJ/word on the network). To increase memory locality at the hardware level and reduce energy consumption related to data movement, future exascale computers tend to use many-core processors on each compute nodes that will have a reduced clock speed to allow for efficient cooling. To compensate for frequency decrease, machine vendors are making use of long SIMD instruction registers that are able to process multiple data with one arithmetic operator in one clock cycle. SIMD registermore » length is expected to double every four years. As a consequence, Particle-In-Cell (PIC) codes will have to achieve good vectorization to fully take advantage of these upcoming architectures. In this paper, we present a new algorithm that allows for efficient and portable SIMD vectorization of current/charge deposition routines that are, along with the field gathering routines, among the most time consuming parts of the PIC algorithm. Our new algorithm uses a particular data structure that takes into account memory alignment constraints and avoids gather/scat;ter instructions that can significantly affect vectorization performances on current CPUs. The new algorithm was successfully implemented in the 3D skeleton PIC code PICSAR and tested on Haswell Xeon processors (AVX2-256 bits wide data registers). Results show a factor of ×2 to ×2.5 speed-up in double precision for particle shape factor of orders 1–3. The new algorithm can be applied as is on future KNL (Knights Landing) architectures that will include AVX-512 instruction sets with 512 bits register lengths (8 doubles/16 singles). Program summary Program Title: vec_deposition Program Files doi:http://dx.doi.org/10.17632/nh77fv9k8c.1 Licensing provisions: BSD 3-Clause Programming language: Fortran 90 External routines/libraries:  OpenMP > 4.0 Nature of problem: Exascale architectures will have many-core processors per node with long vector data registers capable of performing one single instruction on multiple data during one clock cycle. Data register lengths are expected to double every four years and this pushes for new portable solutions for efficiently vectorizing Particle-In-Cell codes on these future many-core architectures. One of the main hotspot routines of the PIC algorithm is the current/charge deposition for which there is no efficient and portable vector algorithm. Solution method: Here we provide an efficient and portable vector algorithm of current/charge deposition routines that uses a new data structure, which significantly reduces gather/scatter operations. Vectorization is controlled using OpenMP 4.0 compiler directives for vectorization which ensures portability across different architectures. Restrictions: Here we do not provide the full PIC algorithm with an executable but only vector routines for current/charge deposition. These scalar/vector routines can be used as library routines in your 3D Particle-In-Cell code. However, to get the best performances out of vector routines you have to satisfy the two following requirements: (1) Your code should implement particle tiling (as explained in the manuscript) to allow for maximized cache reuse and reduce memory accesses that can hinder vector performances. The routines can be used directly on each particle tile. (2) You should compile your code with a Fortran 90 compiler (e.g Intel, gnu or cray) and provide proper alignment flags and compiler alignment directives (more details in README file).« less

Acoustic and aerodynamic performance investigation of inverted velocity profile coannular plug nozzles. [variable cycle engines

NASA Technical Reports Server (NTRS)

Knott, P. R.; Blozy, J. T.; Staid, P. S.

1981-01-01

The results of model scale parametric static and wind tunnel aerodynamic performance tests on unsuppressed coannular plug nozzle configurations with inverted velocity profile are discussed. The nozzle configurations are high-radius-ratio coannular plug nozzles applicable to dual-stream exhaust systems typical of a variable cycle engine for Advanced Supersonic Transport application. In all, seven acoustic models and eight aerodynamic performance models were tested. The nozzle geometric variables included outer stream radius ratio, inner stream to outer stream ratio, and inner stream plug shape. When compared to a conical nozzle at the same specific thrust, the results of the static acoustic tests with the coannular nozzles showed noise reductions of up to 7 PNdB. Extensive data analysis showed that the overall acoustic results can be well correlated using the mixed stream velocity and the mixed stream density. Results also showed that suppression levels are geometry and flow regulation dependent with the outer stream radius ratio, inner stream-to-outer stream velocity ratio and inner stream velocity ratio and inner stream plug shape, as the primary suppression parameters. In addition, high-radius ratio coannular plug nozzles were found to yield shock associated noise level reductions relative to a conical nozzle. The wind tunnel aerodynamic tests showed that static and simulated flight thrust coefficient at typical takeoff conditions are quite good - up to 0.98 at static conditions and 0.974 at a takeoff Mach number of 0.36. At low inner stream flow conditions significant thrust loss was observed. Using an inner stream conical plug resulted in 1% to 2% higher performance levels than nozzle geometries using a bent inner plug.

The Phoenix stream: A cold stream in the southern hemisphere

DOE PAGES

Balbinot, E.

2016-03-17

In this study, we report the discovery of a stellar stream in the Dark Energy Survey (DES) Year 1 (Y1A1) data. The discovery was made through simple color-magnitude filters and visual inspection of the Y1A1 data. We refer to this new object as the Phoenix stream, after its resident constellation. After subtraction of the background stellar population we detect a clear signal of a simple stellar population. By fitting the ridge line of the stream in color-magnitude space, we find that a stellar population with agemore » $$\\tau=11.5\\pm0.5$$ Gyr and $[Fe/H]<-1.6$ located 17.5$$\\pm$$0.9 kpc from the Sun gives an adequate description of the stream stellar population. The stream is detected over an extension of 8$$^{\\circ}.$$1 (2.5 kpc) and has a width of $$\\sim$$54 pc assuming a Gaussian profile, indicating that a globular cluster is a probable progenitor. There is no known globular cluster within 5 kpc compatible with being the progenitor of the stream, assuming that the stream traces its orbit. We examined overdensities along the stream, however no obvious counterpart bound stellar system is visible in the coadded images. We also find overdensities along the stream that appear to be symmetrically distributed - consistent with the epicyclic overdensity scenario for the formation of cold streams - as well as a misalignment between the Northern and Southern part of stream. Despite the close proximity we find no evidence that this stream and the halo cluster NGC 1261 have a common accretion origin linked to the recently found EriPhe overdensity (Li et al. 2016).« less

Occurrence of dichloroacetamide herbicide safeners and co-applied herbicides in midwestern U.S. streams

USGS Publications Warehouse

Woodward, Emily; Hladik, Michelle; Kolpin, Dana W.

2018-01-01

Dichloroacetamide safeners (e.g., AD-67, benoxacor, dichlormid, and furilazole) are co-applied with chloroacetanilide herbicides to protect crops from herbicide toxicity. While such safeners have been used since the early 1970s, there are minimal data about safener usage, occurrence in streams, or potential ecological effects. This study focused on one of these research gaps, occurrence in streams. Seven Midwestern U.S. streams (five in Iowa and two in Illinois), with extensive row-crop agriculture, were sampled at varying frequencies from spring 2016 through summer 2017. All four safeners were detected at least once; furilazole was the most frequently detected (31%), followed by benoxacor (29%), dichlormid (15%), and AD-67 (2%). The maximum concentrations ranged from 42 to 190 ng/L. Stream detections and concentrations of safeners appear to be driven by a combination of timing of application (spring following herbicide application) and precipitation events. Detected concentrations were below known toxicity levels for aquatic organisms.

Contaminants in urban waters—Science capabilities of the U.S. Geological Survey

USGS Publications Warehouse

Jastram, John D.; Hyer, Kenneth E.

2016-04-29

Streams and estuaries with urban watersheds commonly exhibit increased streamflow and decreased base flow; diminished stream-channel stability; excessive amounts of contaminants such as pesticides, metals, industrial and municipal waste, and combustion products; and alterations to biotic community structure. Collectively, these detrimental effects have been termed the “urban-stream syndrome.” Water-resource managers seek to lessen the effects on receiving water bodies of new urban development and remediate the effects in areas of existing urbanization. Similarly, the scientific community has produced extensive research on these topics, with researchers from the U.S. Geological Survey (USGS) leading many studies of urban streams and the processes responsible for the urban-stream syndrome. Increasingly, USGS studies are evaluating the effects of management and restoration activities to better understand how urban waters respond to the implementation of management practices. The USGS has expertise in collecting and interpreting data for many physical, chemical, and ecological processes in urban waters and, thus, provides holistic assessments to inform managers of urban water resources.

A scalable delivery framework and a pricing model for streaming media with advertisements

NASA Astrophysics Data System (ADS)

Al-Hadrusi, Musab; Sarhan, Nabil J.

2008-01-01

This paper presents a delivery framework for streaming media with advertisements and an associated pricing model. The delivery model combines the benefits of periodic broadcasting and stream merging. The advertisements' revenues are used to subsidize the price of the media content. The pricing is determined based on the total ads' viewing time. Moreover, this paper presents an efficient ad allocation scheme and three modified scheduling policies that are well suited to the proposed delivery framework. Furthermore, we study the effectiveness of the delivery framework and various scheduling polices through extensive simulation in terms of numerous metrics, including customer defection probability, average number of ads viewed per client, price, arrival rate, profit, and revenue.

Marginal instability threshold of magnetosonic waves in kappa distributed plasma

NASA Astrophysics Data System (ADS)

Bashir, M. F.; Manzoor, M. Z.; Ilie, R.; Yoon, P. H.; Miasli, M. S.

2017-12-01

The dispersion relation of magnetosonic wave is studied taking the non-extensive anisotropic counter-streaming distribution which follows the Tsallis statistics. The effects of non-extensivity parameter (q), counter-streaming parameter (P) and the wave-particle interaction is analyzed on the growth rate and the marginal instability threshold condition of Magnetosonic (MS) mode to provide the possible explanation of different regions the Bale-diagram obtained from the solar wind data at 1 AU as represented by the temperature anisotropy ( ) vs plasma beta ( ) solar wind data plot. It is shown that the most of the regions of Bale-diagram is bounded by the MS instability under different condition and best fitted by the non-extesnive distribution. The results for the bi-kappa distribution and bi- Maxwellian distribution are also obtained in the limits and respectively.

Designing stream restoration structures using 3D hydro-morphodynamic numerical modeling

NASA Astrophysics Data System (ADS)

Khosronejad, A.; Kozarek, J. L.; Hill, C.; Kang, S.; Plott, R.; Diplas, P.; Sotiropoulos, F.

2012-12-01

Efforts to stabilize and restore streams and rivers across the nation have grown dramatically in the last fifteen years, with over $1 billion spent every year since 1990. The development of effective and long-lasting strategies, however, is far from trivial and despite large investments it is estimated that at least 50% of stream restoration projects fail. This is because stream restoration is today more of an art than a science. The lack of physics-based engineering standards for stream restoration techniques is best underscored in the design and installation of shallow, in-stream, low-flow structures, which direct flow away from the banks, protect stream banks from erosion and scour, and increase habitat diversity. Present-day design guidelines for such in-stream structures are typically vague and rely heavily on empirical knowledge and intuition rather than physical understanding of the interactions of the structures the flow and sediment transport processes in the waterway. We have developed a novel computer-simulation based paradigm for designing in stream structures that is based on state-of-the-art 3D hydro-morphodynamic modeling validated with laboratory and field-scale experiments. The numerical model is based on the Curvilinear Immersed Boundary (CURVIB) approach of Kang et al. and Khosronejad et al. (Adv. in Water Res. 2010, 2011), which can simulate flow and sediment transport processes in arbitrarily complex waterways with embedded rock structures. URANS or large-eddy simulation (LES) models are used to simulate turbulence. Transport of bed materials is simulated using the non-equilibrium Exner equation for the bed surface elevation coupled with a transport equation for suspended load. Extensive laboratory and field-scale experiments have been carried out and employed to validate extensively the computational model. The numerical model is used to develop a virtual testing environment within which one or multiple in-stream structures can be embedded in representative live-bed meandering waterways and simulated numerically to systematically investigate the sensitivity of various design and installation parameters on structure performance and reliability. Waterway geometries are selected by a statistical classification of rivers and streams to represent typical sand-bed and gravel-bed systems found in nature. Results will be presented for rock vanes, J-hook vanes and bendway weirs. Our findings provide novel physical insights into the effects of various in-stream structures on turbulent flow and sediment transport processes in meandering rivers, underscore these effects for different stream-bed materials, and demonstrate how such physics-based analysis can yield design guidelines that often challenge what is commonly done in practice today. To our knowledge, our work is the first systematic attempt to employ advanced numerical modeling coupled with massively parallel supercomputers to design hydraulic structures for stream restoration. This work was supported by NSF Grants EAR-0120914 and EAR-0738726, National Cooperative Highway Research Program Grant NCHRP-HR 24-33.

Revealing the dual streams of speech processing.

PubMed

Fridriksson, Julius; Yourganov, Grigori; Bonilha, Leonardo; Basilakos, Alexandra; Den Ouden, Dirk-Bart; Rorden, Christopher

2016-12-27

Several dual route models of human speech processing have been proposed suggesting a large-scale anatomical division between cortical regions that support motor-phonological aspects vs. lexical-semantic aspects of speech processing. However, to date, there is no complete agreement on what areas subserve each route or the nature of interactions across these routes that enables human speech processing. Relying on an extensive behavioral and neuroimaging assessment of a large sample of stroke survivors, we used a data-driven approach using principal components analysis of lesion-symptom mapping to identify brain regions crucial for performance on clusters of behavioral tasks without a priori separation into task types. Distinct anatomical boundaries were revealed between a dorsal frontoparietal stream and a ventral temporal-frontal stream associated with separate components. Collapsing over the tasks primarily supported by these streams, we characterize the dorsal stream as a form-to-articulation pathway and the ventral stream as a form-to-meaning pathway. This characterization of the division in the data reflects both the overlap between tasks supported by the two streams as well as the observation that there is a bias for phonological production tasks supported by the dorsal stream and lexical-semantic comprehension tasks supported by the ventral stream. As such, our findings show a division between two processing routes that underlie human speech processing and provide an empirical foundation for studying potential computational differences that distinguish between the two routes.

Highly-Parallel, Highly-Compact Computing Structures Implemented in Nanotechnology

NASA Technical Reports Server (NTRS)

Crawley, D. G.; Duff, M. J. B.; Fountain, T. J.; Moffat, C. D.; Tomlinson, C. D.

1995-01-01

In this paper, we describe work in which we are evaluating how the evolving properties of nano-electronic devices could best be utilized in highly parallel computing structures. Because of their combination of high performance, low power, and extreme compactness, such structures would have obvious applications in spaceborne environments, both for general mission control and for on-board data analysis. However, the anticipated properties of nano-devices mean that the optimum architecture for such systems is by no means certain. Candidates include single instruction multiple datastream (SIMD) arrays, neural networks, and multiple instruction multiple datastream (MIMD) assemblies.

A sweep algorithm for massively parallel simulation of circuit-switched networks

NASA Technical Reports Server (NTRS)

Gaujal, Bruno; Greenberg, Albert G.; Nicol, David M.

1992-01-01

A new massively parallel algorithm is presented for simulating large asymmetric circuit-switched networks, controlled by a randomized-routing policy that includes trunk-reservation. A single instruction multiple data (SIMD) implementation is described, and corresponding experiments on a 16384 processor MasPar parallel computer are reported. A multiple instruction multiple data (MIMD) implementation is also described, and corresponding experiments on an Intel IPSC/860 parallel computer, using 16 processors, are reported. By exploiting parallelism, our algorithm increases the possible execution rate of such complex simulations by as much as an order of magnitude.

Improving Quantum Gate Simulation using a GPU

NASA Astrophysics Data System (ADS)

Gutierrez, Eladio; Romero, Sergio; Trenas, Maria A.; Zapata, Emilio L.

2008-11-01

Due to the increasing computing power of the graphics processing units (GPU), they are becoming more and more popular when solving general purpose algorithms. As the simulation of quantum computers results on a problem with exponential complexity, it is advisable to perform a parallel computation, such as the one provided by the SIMD multiprocessors present in recent GPUs. In this paper, we focus on an important quantum algorithm, the quantum Fourier transform (QTF), in order to evaluate different parallelization strategies on a novel GPU architecture. Our implementation makes use of the new CUDA software/hardware architecture developed recently by NVIDIA.

A Code Generation Approach for Auto-Vectorization in the Spade Compiler

NASA Astrophysics Data System (ADS)

Wang, Huayong; Andrade, Henrique; Gedik, Buğra; Wu, Kun-Lung

We describe an auto-vectorization approach for the Spade stream processing programming language, comprising two ideas. First, we provide support for vectors as a primitive data type. Second, we provide a C++ library with architecture-specific implementations of a large number of pre-vectorized operations as the means to support language extensions. We evaluate our approach with several stream processing operators, contrasting Spade's auto-vectorization with the native auto-vectorization provided by the GNU gcc and Intel icc compilers.

Stellar Streams Discovered in the Dark Energy Survey

DOE Office of Scientific and Technical Information (OSTI.GOV)

Shipp, N.; et al.

We perform a search for stellar streams around the Milky Way using the first three years of multi-band optical imaging data from the Dark Energy Survey (DES). We use DES data coveringmore » $$\\sim 5000$$ sq. deg. to a depth of $g > 23.5$ with a relative photometric calibration uncertainty of $$< 1 \\%$$. This data set yields unprecedented sensitivity to the stellar density field in the southern celestial hemisphere, enabling the detection of faint stellar streams to a heliocentric distance of $$\\sim 50$$ kpc. We search for stellar streams using a matched-filter in color-magnitude space derived from a synthetic isochrone of an old, metal-poor stellar population. Our detection technique recovers four previously known thin stellar streams: Phoenix, ATLAS, Tucana III, and a possible extension of Molonglo. In addition, we report the discovery of eleven new stellar streams. In general, the new streams detected by DES are fainter, more distant, and lower surface brightness than streams detected by similar techniques in previous photometric surveys. As a by-product of our stellar stream search, we find evidence for extra-tidal stellar structure associated with four globular clusters: NGC 288, NGC 1261, NGC 1851, and NGC 1904. The ever-growing sample of stellar streams will provide insight into the formation of the Galactic stellar halo, the Milky Way gravitational potential, as well as the large- and small-scale distribution of dark matter around the Milky Way.« less

Effects of Debris Flows on Stream Ecosystems of the Klamath Mountains, Northern California

NASA Astrophysics Data System (ADS)

Cover, M. R.; Delafuente, J. A.; Resh, V. H.

2006-12-01

We examined the long-term effects of debris flows on channel characteristics and aquatic food webs in steep (0.04-0.06 slope), small (4-6 m wide) streams. A large rain-on-snow storm event in January 1997 resulted in numerous landslides and debris flows throughout many basins in the Klamath Mountains of northern California. Debris floods resulted in extensive impacts throughout entire drainage networks, including mobilization of valley floor deposits and removal of vegetation. Comparing 5 streams scoured by debris flows in 1997 and 5 streams that had not been scoured as recently, we determined that debris-flows decreased channel complexity by reducing alluvial step frequency and large woody debris volumes. Unscoured streams had more diverse riparian vegetation, whereas scoured streams were dominated by dense, even-aged stands of white alder (Alnus rhombiflia). Benthic invertebrate shredders, especially nemourid and peltoperlid stoneflies, were more abundant and diverse in unscoured streams, reflecting the more diverse allochthonous resources. Debris flows resulted in increased variability in canopy cover, depending on degree of alder recolonization. Periphyton biomass was higher in unscoured streams, but primary production was greater in the recently scoured streams, suggesting that invertebrate grazers kept algal assemblages in an early successional state. Glossosomatid caddisflies were predominant scrapers in scoured streams; heptageniid mayflies were abundant in unscoured streams. Rainbow trout (Oncorhynchus mykiss) were of similar abundance in scoured and unscoured streams, but scoured streams were dominated by young-of-the-year fish while older juveniles were more abundant in unscoured streams. Differences in the presence of cold-water (Doroneuria) versus warm-water (Calineuria) perlid stoneflies suggest that debris flows have altered stream temperatures. Debris flows have long-lasting impacts on stream communities, primarily through the cascading effects of removal of riparian vegetation. Because debris flow frequency increases following road construction and timber harvest, the long-term biological effects of debris flows on stream ecosystems, including anadromous fish populations, needs to be considered in forest management decisions.

Assessing effects of stocked trout on nongame fish assemblages in southern Appalachian Mountain streams

USGS Publications Warehouse

Weaver, D.; Kwak, Thomas J.

2013-01-01

Fisheries managers are faced with the challenge of balancing the management of recreational fisheries with that of conserving native species and preserving ecological integrity. The negative effects that nonnative trout species exert on native trout are well documented and include alteration of competitive interactions, habitat use, and production. However, the effects that nonnative trout may exert on nongame fish assemblages are poorly understood. Our objectives were to quantify the effects of trout stocking on native nongame fish assemblages intensively on one newly stocked river, the North Toe River, North Carolina, and extensively on other southern Appalachian Mountain streams that are annually stocked with trout. In the intensive study, we adopted a before-after, control-impact (BACI) experimental design to detect short-term effects on the nongame fish assemblage and found no significant differences in fish density, species richness, species diversity, or fish microhabitat use associated with trout stocking. We observed differences in fish microhabitat use between years, however, which suggests there is a response to environmental changes, such as the flow regime, which influence available habitat. In the extensive study, we sampled paired stocked and unstocked stream reaches to detect long-term effects from trout stocking; however, we detected no differences in nongame fish density, species richness, species diversity, or population size structure between paired sites. Our results revealed high inherent system variation caused by natural and anthropogenic factors that appear to overwhelm any acute or chronic effect of stocked trout. Furthermore, hatchery-reared trout may be poor competitors in a natural setting and exert a minimal or undetectable impact on native fish assemblages in these streams. These findings provide quantitative results necessary to assist agencies in strategic planning and decision making associated with trout fisheries, stream management, and conservation of native fishes.

Stream interfaces and energetic ions II: Ulysses test of Pioneer results

NASA Technical Reports Server (NTRS)

Intriligator, Devrie S.; Siscoe, George L.; Wibberenz, Gerd; Kunow, Horst; Gosling, John T.

1995-01-01

Ulysses measurements of energetic and solar wind particles taken near 5 AU between 20 and 30 degrees south latitude during a well-developed recurring corotating interaction region (CIR) show that the CIR's corotating energetic ion population (CEIP) associated with the trailing reverse shock starts within the CIR at the stream interface. This is consistent with an earlier result obtained by Pioneers 10 and 11 in the ecliptic plane between 4 and 6 AU. The Ulysses/Pioneer finding is noteworthy since the stream interface is not magnetically connected to the reverse shock, but lies 12-17 corotation hours from it. Thus, the finding seems to be inconsistent with the basic model that generates CEIP particles at the reverse shock and propagates them along field lines. Eliminating the inconsistency probably entails an extension of the standard model such as cross-field diffusion or a non-shock energization process operating near the stream interface closer to the sun.

Simulation of groundwater flow and streamflow depletion in the Branch Brook, Merriland River, and parts of the Mousam River watersheds in southern Maine

USGS Publications Warehouse

Nielsen, Martha G.; Locke, Daniel B.

2015-01-01

The study evaluated two different methods of calculating in-stream flow requirements for Branch Brook and the Merriland River—a set of statewide equations used to calculate monthly median flows and the MOVE.1 record-extension technique used on site-specific streamflow measurements. The August median in-stream flow requirement in the Merriland River was calculated as 7.18 ft3/s using the statewide equations but was 3.07 ft3/s using the MOVE.1 analysis. In Branch Brook, the August median in-stream flow requirements were calculated as 20.3 ft3/s using the statewide equations and 11.8 ft3/s using the MOVE.1 analysis. In each case, using site-specific data yields an estimate of in-stream flow that is much lower than an estimate the statewide equations provide.

Streamflow characteristics related to channel geometry of streams in western United States

USGS Publications Warehouse

Hedman, E.R.; Osterkamp, W.R.

1982-01-01

Assessment of surface-mining and reclamation activities generally requires extensive hydrologic data. Adequate streamflow data from instrumented gaging stations rarely are available, and estimates of surface- water discharge based on rainfall-runoff models, drainage area, and basin characteristics sometimes have proven unreliable. Channel-geometry measurements offer an alternative method of quickly and inexpensively estimating stream-flow characteristics for ungaged streams. The method uses the empirical development of equations to yield a discharge value from channel-geometry and channel-material data. The equations are developed by collecting data at numerous streamflow-gaging sites and statistically relating those data to selected discharge characteristics. Mean annual runoff and flood discharges with selected recurrence intervals can be estimated for perennial, intermittent, and ephemeral streams. The equations were developed from data collected in the western one-half of the conterminous United States. The effect of the channel-material and runoff characteristics are accounted for with the equations.

Large woody debris and land management in California's hardwood-dominated watersheds.

PubMed

Opperman, Jeff J

2005-03-01

Although large woody debris (LWD) has been studied extensively in conifer-dominated watersheds, relatively little is known about LWD in hardwood-dominated watersheds. Field surveys of 32 hardwood-dominated stream reaches in northern coastal California revealed that levels of LWD varied with land ownership and that living trees strongly influenced debris jam formation. Almost half of the channel-spanning debris jams, which stored the most wood and were most likely to form a pool, were formed behind a key piece that was still living. These living key pieces might provide greater longevity and stability than would otherwise be expected from hardwood LWD. Compared to streams on private land, streams on public land had significantly greater LWD loading and debris-jam frequency. Land management practices that remove wood from streams might be contributing to the degradation of salmonid habitat in California's hardwood-dominated watersheds.

Riparian control of stream-water chemistry: Implications for hydrochemical basin models

USGS Publications Warehouse

Hooper, R.P.; Aulenbach, Brent T.; Burns, Douglas A.; McDonnell, J.; Freer, J.; Kendall, C.; Beven, K.

1998-01-01

End-member mixing analysis has been used to determine the hydrological structure for basin hydrochemical models at several catchments. Implicit in this use is the assumption that controlling end members have been identified, and that these end members represent distinct landscape locations. At the Panola Mountain Research Watershed, the choice of controlling end members was supported when a large change in the calcium and sulphate concentration of one of the end members was reflected in the stream water. More extensive sampling of groundwater and soil water indicated, however, that the geographic extent of the contributing end members was limited to the riparian zone. Hillslope solutions were chemically distinct from the riparian solutions and did not appear to make a large contribution to streamflow. The dominant control of the riparian zone on stream-water chemistry suggests that hydrological flow paths cannot be inferred from stream-water chemical dynamics.

Spatially intensive sampling by electrofishing for assessing longitudinal discontinuities in fish distribution in a headwater stream

USGS Publications Warehouse

Le Pichon, Céline; Tales, Évelyne; Belliard, Jérôme; Torgersen, Christian E.

2017-01-01

Spatially intensive sampling by electrofishing is proposed as a method for quantifying spatial variation in fish assemblages at multiple scales along extensive stream sections in headwater catchments. We used this method to sample fish species at 10-m2 points spaced every 20 m throughout 5 km of a headwater stream in France. The spatially intensive sampling design provided information at a spatial resolution and extent that enabled exploration of spatial heterogeneity in fish assemblage structure and aquatic habitat at multiple scales with empirical variograms and wavelet analysis. These analyses were effective for detecting scales of periodicity, trends, and discontinuities in the distribution of species in relation to tributary junctions and obstacles to fish movement. This approach to sampling riverine fishes may be useful in fisheries research and management for evaluating stream fish responses to natural and altered habitats and for identifying sites for potential restoration.

The genesis and exodus of vascular plant DOM from an oak woodland landscape

NASA Astrophysics Data System (ADS)

Hernes, Peter J.; Spencer, Robert G. M.; Dyda, Rachael Y.; O'Geen, Anthony T.; Dahlgren, Randy A.

2017-02-01

Evaluating the collective impact of small source inputs to larger rivers is a constant challenge in riverine biogeochemistry. In this study, we investigated the generation of dissolved organic matter (DOM) in a small oak woodland catchment in the foothills of northern California, the subsequent transformation in lignin biomarkers and chromophoric DOM (CDOM) parameters during transport through the landscape to an exporting stream, and finally the overall compositional impact on the larger receiving stream and river. Our study included a natural leaching experiment in which precipitation passing through oak, pine, and grass litter and duff samples was collected after each of a series of storms. Also included were soil trench samples to capture subsurface flow, stream samples along with point-source reservoir inputs, and samples of canopy throughfall, stemflow, and gopher hole (bypass) flow. The litter/duff leaching study demonstrated changing DOM fractionation patterns throughout the season, as evidenced by changing lignin compositions in the leachates with each successive storm. This adds a necessary seasonal component to interpreting lignin compositions in streams, as the source signatures are constantly changing. Released DOM from leaching was modified extensively during transit through the subsurface to the stream, with preferential increases in aromaticity as evidenced by increases in carbon-normalized absorbance at 254 nm, yet preferential decreases in lignin phenols, as evidence by carbon-normalized lignin yields in the headwater stream that was less than half that of the litter/duff leachates. Our extensive number of lignin measurements for source materials reveals a much more complex perspective on using lignin as a source indicator, as many riverine values for syringyl:vanillyl and cinnamyl:vanillyl ratios that have previously been interpreted as degraded lignin signatures are also possible as unmodified source signatures. Finally, this study demonstrated that the impact of numerous small headwater streams can significantly overprint the DOM signatures of much larger rivers over relatively short distances spanning several to tens of kilometers. This finding in particular challenges the assumption that river studies can be adequately conducted by focusing only on the main tributaries.

Acetochlor in the hydrologic system in the midwestern United States, 1994

USGS Publications Warehouse

Kolpin, D.W.; Nations, B.K.; Goolsby, D.A.; Thurman, E.M.

1996-01-01

The herbicide acetochlor [2-chloro-N-(ethoxymethyl)-N-(2-ethyl-6-methylphenyl)acetamide] was given conditional registration in the United States by the U.S. Environmental Protection Agency in March 1994. This registration provided a rare opportunity to investigate the occurrence of a pesticide during its first season of extensive use in the midwestern United States. Water samples collected and analyzed by the U.S. Geological Survey during 1994 documented the distribution of acetochlor in the hydrologic system; it was detected in 29% of the rain samples from four sites in Iowa, 17% of the stream samples from 51 sites across nine states, and 0% of the groundwater samples from 38 wells across eight states. Acetochlor exhibited concentration increases in rain and streams following its application to corn in the midwestern United States, with 75% of the rainwater and 35% of the stream samples having acetochlor detected during this time period. Acetochlor concentrations in rain decreased as the growing season progressed. Based on the limited data collected for this study, it is anticipated that acetochlor concentrations will have a seasonal pattern in rain and streams similar to those of other acetanilide herbicides examined. Possible explanations for the absence of acetochlor in groundwater for this study include the rapid degradation of acetochlor in the soil zone, insufficient time for this first extensive use of acetochlor to have reached the aquifers sampled, and the possible lack of acetochlor use in the recharge areas for the wells examined.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Balbinot, E.

In this study, we report the discovery of a stellar stream in the Dark Energy Survey (DES) Year 1 (Y1A1) data. The discovery was made through simple color-magnitude filters and visual inspection of the Y1A1 data. We refer to this new object as the Phoenix stream, after its resident constellation. After subtraction of the background stellar population we detect a clear signal of a simple stellar population. By fitting the ridge line of the stream in color-magnitude space, we find that a stellar population with agemore » $$\\tau=11.5\\pm0.5$$ Gyr and $[Fe/H]<-1.6$ located 17.5$$\\pm$$0.9 kpc from the Sun gives an adequate description of the stream stellar population. The stream is detected over an extension of 8$$^{\\circ}.$$1 (2.5 kpc) and has a width of $$\\sim$$54 pc assuming a Gaussian profile, indicating that a globular cluster is a probable progenitor. There is no known globular cluster within 5 kpc compatible with being the progenitor of the stream, assuming that the stream traces its orbit. We examined overdensities along the stream, however no obvious counterpart bound stellar system is visible in the coadded images. We also find overdensities along the stream that appear to be symmetrically distributed - consistent with the epicyclic overdensity scenario for the formation of cold streams - as well as a misalignment between the Northern and Southern part of stream. Despite the close proximity we find no evidence that this stream and the halo cluster NGC 1261 have a common accretion origin linked to the recently found EriPhe overdensity (Li et al. 2016).« less

Geospace simulations using modern accelerator processor technology

NASA Astrophysics Data System (ADS)

Germaschewski, K.; Raeder, J.; Larson, D. J.

2009-12-01

OpenGGCM (Open Geospace General Circulation Model) is a well-established numerical code simulating the Earth's space environment. The most computing intensive part is the MHD (magnetohydrodynamics) solver that models the plasma surrounding Earth and its interaction with Earth's magnetic field and the solar wind flowing in from the sun. Like other global magnetosphere codes, OpenGGCM's realism is currently limited by computational constraints on grid resolution. OpenGGCM has been ported to make use of the added computational powerof modern accelerator based processor architectures, in particular the Cell processor. The Cell architecture is a novel inhomogeneous multicore architecture capable of achieving up to 230 GFLops on a single chip. The University of New Hampshire recently acquired a PowerXCell 8i based computing cluster, and here we will report initial performance results of OpenGGCM. Realizing the high theoretical performance of the Cell processor is a programming challenge, though. We implemented the MHD solver using a multi-level parallelization approach: On the coarsest level, the problem is distributed to processors based upon the usual domain decomposition approach. Then, on each processor, the problem is divided into 3D columns, each of which is handled by the memory limited SPEs (synergistic processing elements) slice by slice. Finally, SIMD instructions are used to fully exploit the SIMD FPUs in each SPE. Memory management needs to be handled explicitly by the code, using DMA to move data from main memory to the per-SPE local store and vice versa. We use a modern technique, automatic code generation, which shields the application programmer from having to deal with all of the implementation details just described, keeping the code much more easily maintainable. Our preliminary results indicate excellent performance, a speed-up of a factor of 30 compared to the unoptimized version.

Parasail: SIMD C library for global, semi-global, and local pairwise sequence alignments.

PubMed

Daily, Jeff

2016-02-10

Sequence alignment algorithms are a key component of many bioinformatics applications. Though various fast Smith-Waterman local sequence alignment implementations have been developed for x86 CPUs, most are embedded into larger database search tools. In addition, fast implementations of Needleman-Wunsch global sequence alignment and its semi-global variants are not as widespread. This article presents the first software library for local, global, and semi-global pairwise intra-sequence alignments and improves the performance of previous intra-sequence implementations. A faster intra-sequence local pairwise alignment implementation is described and benchmarked, including new global and semi-global variants. Using a 375 residue query sequence a speed of 136 billion cell updates per second (GCUPS) was achieved on a dual Intel Xeon E5-2670 24-core processor system, the highest reported for an implementation based on Farrar's 'striped' approach. Rognes's SWIPE optimal database search application is still generally the fastest available at 1.2 to at best 2.4 times faster than Parasail for sequences shorter than 500 amino acids. However, Parasail was faster for longer sequences. For global alignments, Parasail's prefix scan implementation is generally the fastest, faster even than Farrar's 'striped' approach, however the opal library is faster for single-threaded applications. The software library is designed for 64 bit Linux, OS X, or Windows on processors with SSE2, SSE41, or AVX2. Source code is available from https://github.com/jeffdaily/parasail under the Battelle BSD-style license. Applications that require optimal alignment scores could benefit from the improved performance. For the first time, SIMD global, semi-global, and local alignments are available in a stand-alone C library.

Unplanned medication discontinuation as a potential pharmacovigilance signal: a nested young person cohort study

PubMed Central

2014-01-01

Background Because of relatively small treatment numbers together with low adverse drug reaction (ADR) reporting rates the timely identification of ADRs affecting children and young people is problematic. The primary objective of this study was to assess the utility of unplanned medication discontinuation as a signal for possible ADRs in children and young people. Methods Using orlistat as an exemplar, all orlistat prescriptions issued to patients up to 18 years of age together with patient characteristics, prescription duration, co-prescribed medicines and recorded clinical (Read) codes were identified from the Primary Care Informatics Unit database between 1st Jan 2006-30th Nov 2009. Binary logistic regression was used to assess association between characteristics and discontinuation. Results During the study period, 79 patients were prescribed orlistat (81% female, median age 17 years). Unplanned medication discontinuation rates for orlistat were 52% and 77% at 1 and 3-months. Almost 20% of patients were co-prescribed an anti-depressant. One month unplanned medication discontinuation was significantly lower in the least deprived group (SIMD 1–2 compared to SIMD 9–10 OR 0.09 (95% CI0.01 – 0.83)) and those co-prescribed at least one other medication. At 3 months, discontinuation was higher in young people (≥17 yr versus, OR 3.07 (95% CI1.03 – 9.14)). Read codes were recorded for digestive, respiratory and urinary symptoms around the time of discontinuation for 24% of patients. Urinary retention was reported for 7.6% of patients. Conclusions Identification of unplanned medication discontinuation using large primary care datasets may be a useful tool for pharmacovigilance signal generation and detection of potential ADRs in children and young people. PMID:24594374

Controls on the early Holocene collapse of the Bothnian Sea Ice Stream

NASA Astrophysics Data System (ADS)

Clason, Caroline C.; Greenwood, Sarah L.; Selmes, Nick; Lea, James M.; Jamieson, Stewart S. R.; Nick, Faezeh M.; Holmlund, Per

2016-12-01

New high-resolution multibeam data in the Gulf of Bothnia reveal for the first time the subglacial environment of a Bothnian Sea Ice Stream. The geomorphological record suggests that increased meltwater production may have been important in driving rapid retreat of Bothnian Sea Ice during deglaciation. Here we apply a well-established, one-dimensional flow line model to simulate ice flow through the Gulf of Bothnia and investigate controls on retreat of the ice stream during the post-Younger Dryas deglaciation of the Fennoscandian Ice Sheet. The relative influence of atmospheric and marine forcings are investigated, with the modeled ice stream exhibiting much greater sensitivity to surface melting, implemented through surface mass balance and hydrofracture-induced calving, than to submarine melting or relative sea level change. Such sensitivity is supported by the presence of extensive meltwater features in the geomorphological record. The modeled ice stream does not demonstrate significant sensitivity to changes in prescribed ice stream width or overall bed slope, but local variations in basal topography and ice stream width result in nonlinear retreat of the grounding line, notably demonstrating points of short-lived retreat slowdown on reverse bed slopes. Retreat of the ice stream was most likely governed by increased ice surface meltwater production, with the modeled retreat rate less sensitive to marine forcings despite the marine setting.

Aerogeophysical evidence for active volcanism beneath the West Antarctic Ice Sheet

NASA Technical Reports Server (NTRS)

Blankenship, Donald D.; Bell, Robin E.; Hodge, Steven M.; Brozena, John M.; Behrendt, John C.

1993-01-01

Although it is widely understood that the collapse of the West Antarctic Ice Sheet (WAIS) would cause a global sea-level rise of 6 m, there continues to be considerable debate about the response of this ice sheet to climate change. The stability of the WAIS, which is characterized by a bed grounded well below sea level, may depend on geologically controlled conditions at the base, which are independent of climate. Ice streams moving up to 750 m/yr disperse material from the interior through to the oceans. As these ice streams tend to buffer the reservoir of slow-moving inland ice from exposure to oceanic degradation, understanding the ice-streaming process is important for evaluating WAIS stability. There is strong evidence that ice streams slide on a lubricating layer of water-saturated till. Development of this basal layer requires both water and easily eroded sediments. Active lithospheric extension may elevate regional heat flux, increase basal melting, and trigger ice streaming. If a geologically defined boundary with a sharp contrast in geothermal flux exists beneath the WAIS, ice streams may only be capable of operating as a buffer over a restricted region. Should ocean waters penetrate beyond this boundary, the ice-stream buffer would disappear, possibly triggering a collapse of the inland ice reservoir. Aerogeophysical evidence for active volcanism and elevated heat flux beneath the WAIS near the critical region where ice streaming begins is presented.

Verification of Geosat sea surface topography in the Gulf Stream extension with surface drifting buoys and hydrographic measurements

NASA Astrophysics Data System (ADS)

Willebrand, J.; KäSe, R. H.; Stammer, D.; Hinrichsen, H.-H.; Krauss, W.

1990-03-01

Altimeter data from Geosat have been analyzed in the Gulf Stream extension area. Horizontal maps of the sea surface height anomaly relative to an annual mean for various 17-day intervals were constructed using an objective mapping procedure. The mean sea level was approximated by the dynamic topography from climatological hydrographic data. Geostrophic surface velocities derived from the composite maps (mean plus anomaly) are significantly correlated with surface drifter velocities observed during an oceanographie experiment in the spring of 1987. The drifter velocities contain much energy on scales less than 100 km which are not resolved in the altimetric maps. It is shown that the composite sea surface height also agrees well with ground verification from hydrographic data along sections in a triangle between the Azores, Newfoundland, and Bermuda, except in regions of high mean gradients.

TRACING THE ORPHAN STREAM TO 55 kpc WITH RR LYRAE STARS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sesar, Branimir; Cohen, Judith G.; Bellm, Eric C.

2013-10-10

We report positions, velocities, and metallicities of 50 ab-type RR Lyrae (RRab) stars observed in the vicinity of the Orphan stellar stream. Using about 30 RRab stars classified as being likely members of the Orphan stream, we study the metallicity and the spatial extent of the stream. We find that RRab stars in the Orphan stream have a wide range of metallicities, from –1.5 dex to –2.7 dex. The average metallicity of the stream is –2.1 dex, identical to the value obtained by Newberg et al. using blue horizontal branch stars. We find that the most distant parts of themore » stream (40-50 kpc from the Sun) are about 0.3 dex more metal-poor than the closer parts (within ∼30 kpc), suggesting a possible metallicity gradient along the stream's length. We have extended the previous studies and have mapped the stream up to 55 kpc from the Sun. Even after a careful search, we did not identify any more distant RRab stars that could plausibly be members of the Orphan stream. If confirmed with other tracers, this result would indicate a detection of the end of the leading arm of the stream. We have compared the distances of Orphan stream RRab stars with the best-fit orbits obtained by Newberg et al. We find that model 6 of Newberg et al. cannot explain the distances of the most remote Orphan stream RRab stars, and conclude that the best fit to distances of Orphan stream RRab stars and to the local circular velocity is provided by potentials where the total mass of the Galaxy within 60 kpc is M{sub 60} ∼ 2.7 × 10{sup 11} M{sub ☉}, or about 60% of the mass found by previous studies. More extensive modeling that would consider non-spherical potentials and the possibility of misalignment between the stream and the orbit is highly encouraged.« less

Response of Periphyton to Seasonal Changes in Nutrient Concentrations in Central Illinois Agricultural Streams

NASA Astrophysics Data System (ADS)

Kirkham, K. G.; Perry, W. L.

2005-05-01

Headwater streams in central Illinois have been dredged and channelized to drain surrounding agricultural fields and has led to extensive erosion and eutrophication. Restoration of these systems through farmer implementation of Best Management Practices (BMPs) may be one solution. Examination of algal population dynamics may be useful in assessment of BMP effectiveness. We have monitored two small headwater streams, Bray Creek and Frog Alley, for a suite of physicochemical parameters focusing on dissolved oxygen, nitrogen, and phosphorus for three years. Nutrient concentrations suggested potential nutrient limitation by nitrates during late summer and phosphorus limitation in early summer. To determine seasonal algal dynamics with seasonally varying nutrient limitation in agricultural headwater streams, we used nutrient diffusing substrata (NDS). NDS with agar (controls) or amended with either nitrogen, phosphorus, or both were deployed for 21-24 days in both streams each month for a year. Slight nutrient limitation was observed in Bray Creek during August and November while phosphorus was limiting in September (P<0.05). We suggest agricultural streams are more dynamic than previously thought and algal populations may be seasonally nutrient limited and with consequent effects on dissolved oxygen concentrations.

Juvenile coho salmon growth and health in streams across an urbanization gradient

USGS Publications Warehouse

Spanjer, Andrew R.; Moran, Patrick W.; Larsen, Kimberly; Wetzel, Lisa; Hansen, Adam G.; Beauchamp, David A.

2018-01-01

Expanding human population and urbanization alters freshwater systems through structural changes to habitat, temperature effects from increased runoff and reduced canopy cover, altered flows, and increased toxicants. Current stream assessments stop short of measuring health or condition of species utilizing these freshwater habitats and fail to link specific stressors mechanistically to the health of organisms in the stream. Juvenile fish growth integrates both external and internal conditions providing a useful indicator of habitat quality and ecosystem health. Thus, there is a need to account for ecological and environmental influences on fish growth accurately. Bioenergetics models can simulate changes in growth and consumption in response to environmental conditions and food availability to account for interactions between an organism's environmental experience and utilization of available resources. The bioenergetics approach accounts for how thermal regime, food supply, and food quality affect fish growth. This study used a bioenergetics modeling approach to evaluate the environmental factors influencing juvenile coho salmon growth among ten Pacific Northwest streams spanning an urban gradient. Urban streams tended to be warmer, have earlier emergence dates and stronger early season growth. However, fish in urban streams experienced increased stress through lower growth efficiencies, especially later in the summer as temperatures warmed, with as much as a 16.6% reduction when compared to fish from other streams. Bioenergetics modeling successfully characterized salmonid growth in small perennial streams as part of a more extensive monitoring program and provides a powerful assessment tool for characterizing mixed life-stage specific responses in urban streams.

Summer stream water temperature models for Great Lakes streams: New York

USGS Publications Warehouse

Murphy, Marilyn K.; McKenna, James E.; Butryn, Ryan S.; McDonald, Richard P.

2010-01-01

Temperature is one of the most important environmental influences on aquatic organisms. It is a primary driver of physiological rates and many abiotic processes. However, despite extensive research and measurements, synoptic estimates of water temperature are not available for most regions, limiting our ability to make systemwide and large-scale assessments of aquatic resources or estimates of aquatic species abundance and biodiversity. We used subwatershed averaging of point temperature measurements and associated multiscale landscape habitat conditions from over 3,300 lotic sites throughout New York State to develop and train artificial neural network models. Separate models predicting water temperature (in cold, cool, and warm temperature classes) within small catchment–stream order groups were developed for four modeling units, which together encompassed the entire state. Water temperature predictions were then made for each stream segment in the state. All models explained more than 90% of data variation. Elevation, riparian forest cover, landscape slope, and growing degree-days were among the most important model predictors of water temperature classes. Geological influences varied among regions. Predicted temperature distributions within stream networks displayed patterns of generally increasing temperature downstream but were patchy due to the averaging of water temperatures within stream size-classes of small drainages. Models predicted coldwater streams to be most numerous and warmwater streams to be generally associated with the largest rivers and relatively flat agricultural areas and urban areas. Model predictions provide a complete, georeferenced map of summer daytime mean stream temperature potential throughout New York State that can be used for planning and assessment at spatial scales from the stream segment class to the entire state.

SQL Triggers Reacting on Time Events: An Extension Proposal

NASA Astrophysics Data System (ADS)

Behrend, Andreas; Dorau, Christian; Manthey, Rainer

Being able to activate triggers at timepoints reached or after time intervals elapsed has been acknowledged by many authors as a valuable functionality of a DBMS. Recently, the interest in time-based triggers has been renewed in the context of data stream monitoring. However, up till now SQL triggers react to data changes only, even though research proposals and prototypes have been supporting several other event types, in particular time-based ones, since long. We therefore propose a seamless extension of the SQL trigger concept by time-based triggers, focussing on semantic issues arising from such an extension.

A MULTIDISCIPLINARY APPROACH TO STORMWATER MANAGEMENT AT THE WATERSHED SCALE.

EPA Science Inventory

Stormwater runoff from extensive impervious surfaces in urban and suburban areas has led to human safety risks and stream ecosystem impairment, triggering an interest in watershed-scale retrofit stormwater management. Such stormwater management is of multidisciplinary relevance, ...

A MULTIDISCIPLINARY APPROACH TO STORMWATER MANAGEMENT AT THE catchment SCALE

EPA Science Inventory

Stormwater runoff from extensive impervious surfaces in urban and suburban areas has led to human safety risks and stream ecosystem impairment, triggering an interest in catchment-scale retrofit stormwater management. Such stormwater management is of multidisciplinary relevance, ...

RETROFIT STORMWATER MANAGEMENT: NAVIGATING MULTIDISCIPLINARY HURDLES AT THE WATERSHED SCALE

EPA Science Inventory

Stormwater runoff from extensive impervious surfaces in urban and suburban areas has led to human safety risks and stream ecosystem impairment, triggering an interest in watershed-scale retrofit stormwater management. Such stormwater management is of multidisciplinary relevance, ...

HEAVY METALS STRUCTURE BENTHIC COMUNITIES IN COLORADO MOUNTAIN STREAMS

EPA Science Inventory

The development of field sampling designs that employ multiple reference and polluted sites has been proposed as an alternative to the traditional upstream vs. downstream approach used in most biomonitoring studies. Spatially extensive monitoring programs can characterize ecologi...

Stochastic Packet Loss Model to Evaluate QoE Impairments

NASA Astrophysics Data System (ADS)

Hohlfeld, Oliver

With provisioning of broadband access for mass market—even in wireless and mobile networks—multimedia content, especially real-time streaming of high-quality audio and video, is extensively viewed and exchanged over the Internet. Quality of Experience (QoE) aspects, describing the service quality perceived by the user, is a vital factor in ensuring customer satisfaction in today's communication networks. Frameworks for accessing quality degradations in streamed video currently are investigated as a complex multi-layered research topic, involving network traffic load, codec functions and measures of user perception of video quality.

National Dam Safety Program. Missouri Power and Light Dam (MO 10065), Mississippi - Salt - Quincy River Basin, Audrain County, Missouri. Phase I Inspection Report.

DTIC Science & Technology

1978-12-01

Audrain Stream : Unnamed Tributary of North Fork of Salt River Date of Inspection: September 29 and 30, 1978 Missouri Power and Light Dam No. Mo.10065...for a power plant, and the reser- voir is also used for recreation. The only operating facility at the darnsite is the pump station adjacent to the...identify due to heavy vegetation. 3. Generally unstable rock wall protecting the up- stream slope. 4. Extensive rodent activity throughout the embankment

Measurements of Turbulent Convection Speeds in Multistream Jets Using Time-Resolved PIV

NASA Technical Reports Server (NTRS)

Bridges, James; Wernet, Mark P.

2017-01-01

Convection speeds of turbulent velocities in jets, including multi-stream jets with and without flight stream, were measured using an innovative application of time-resolved particle image velocimetry. The paper describes the unique instrumentation and data analysis that allows the measurement to be made. Extensive data is shown that relates convection speed, mean velocity, and turbulent velocities for multiple jet cases. These data support the overall observation that the local turbulent convection speed is roughly that of the local mean velocity, biased by the relative intensity of turbulence.

Measurements of Turbulence Convection Speeds in Multistream Jets Using Time-Resolved PIV

NASA Technical Reports Server (NTRS)

Bridges, James; Wernet, Mark P.

2017-01-01

Convection speeds of turbulent velocities in jets, including multi-stream jets with and without flight stream, were measured using an innovative application of time-resolved particle image velocimetry. The paper describes the unique instrumentation and data analysis that allows the measurement to be made. Extensive data is shown that relates convection speed, mean velocity, and turbulent velocities for multiple jet cases. These data support the overall observation that the local turbulent convection speed is roughly that of the local mean velocity, biased by the relative intensity of turbulence.

Model-based vision using geometric hashing

NASA Astrophysics Data System (ADS)

Akerman, Alexander, III; Patton, Ronald

1991-04-01

The Geometric Hashing technique developed by the NYU Courant Institute has been applied to various automatic target recognition applications. In particular, I-MATH has extended the hashing algorithm to perform automatic target recognition ofsynthetic aperture radar (SAR) imagery. For this application, the hashing is performed upon the geometric locations of dominant scatterers. In addition to being a robust model-based matching algorithm -- invariant under translation, scale, and 3D rotations of the target -- hashing is of particular utility because it can still perform effective matching when the target is partially obscured. Moreover, hashing is very amenable to a SIMD parallel processing architecture, and thus potentially realtime implementable.

Kalman filter tracking on parallel architectures

NASA Astrophysics Data System (ADS)

Cerati, G.; Elmer, P.; Krutelyov, S.; Lantz, S.; Lefebvre, M.; McDermott, K.; Riley, D.; Tadel, M.; Wittich, P.; Wurthwein, F.; Yagil, A.

2017-10-01

We report on the progress of our studies towards a Kalman filter track reconstruction algorithm with optimal performance on manycore architectures. The combinatorial structure of these algorithms is not immediately compatible with an efficient SIMD (or SIMT) implementation; the challenge for us is to recast the existing software so it can readily generate hundreds of shared-memory threads that exploit the underlying instruction set of modern processors. We show how the data and associated tasks can be organized in a way that is conducive to both multithreading and vectorization. We demonstrate very good performance on Intel Xeon and Xeon Phi architectures, as well as promising first results on Nvidia GPUs.

Parallel processors and nonlinear structural dynamics algorithms and software

NASA Technical Reports Server (NTRS)

Belytschko, Ted; Gilbertsen, Noreen D.; Neal, Mark O.; Plaskacz, Edward J.

1989-01-01

The adaptation of a finite element program with explicit time integration to a massively parallel SIMD (single instruction multiple data) computer, the CONNECTION Machine is described. The adaptation required the development of a new algorithm, called the exchange algorithm, in which all nodal variables are allocated to the element with an exchange of nodal forces at each time step. The architectural and C* programming language features of the CONNECTION Machine are also summarized. Various alternate data structures and associated algorithms for nonlinear finite element analysis are discussed and compared. Results are presented which demonstrate that the CONNECTION Machine is capable of outperforming the CRAY XMP/14.

Fast and accurate de novo genome assembly from long uncorrected reads

PubMed Central

Vaser, Robert; Sović, Ivan; Nagarajan, Niranjan

2017-01-01

The assembly of long reads from Pacific Biosciences and Oxford Nanopore Technologies typically requires resource-intensive error-correction and consensus-generation steps to obtain high-quality assemblies. We show that the error-correction step can be omitted and that high-quality consensus sequences can be generated efficiently with a SIMD-accelerated, partial-order alignment–based, stand-alone consensus module called Racon. Based on tests with PacBio and Oxford Nanopore data sets, we show that Racon coupled with miniasm enables consensus genomes with similar or better quality than state-of-the-art methods while being an order of magnitude faster. PMID:28100585

Serial multiplier arrays for parallel computation

NASA Technical Reports Server (NTRS)

Winters, Kel

1990-01-01

Arrays of systolic serial-parallel multiplier elements are proposed as an alternative to conventional SIMD mesh serial adder arrays for applications that are multiplication intensive and require few stored operands. The design and operation of a number of multiplier and array configurations featuring locality of connection, modularity, and regularity of structure are discussed. A design methodology combining top-down and bottom-up techniques is described to facilitate development of custom high-performance CMOS multiplier element arrays as well as rapid synthesis of simulation models and semicustom prototype CMOS components. Finally, a differential version of NORA dynamic circuits requiring a single-phase uncomplemented clock signal introduced for this application.

Special-purpose computing for dense stellar systems

NASA Astrophysics Data System (ADS)

Makino, Junichiro

2007-08-01

I'll describe the current status of the GRAPE-DR project. The GRAPE-DR is the next-generation hardware for N-body simulation. Unlike the previous GRAPE hardwares, it is programmable SIMD machine with a large number of simple processors integrated into a single chip. The GRAPE-DR chip consists of 512 simple processors and operates at the clock speed of 500 MHz, delivering the theoretical peak speed of 512/226 Gflops (single/double precision). As of August 2006, the first prototype board with the sample chip successfully passed the test we prepared. The full GRAPE-DR system will consist of 4096 chips, reaching the theoretical peak speed of 2 Pflops.

Escherichia coli Concentrations in Recreational Streams and Backcountry Drinking-Water Supplies in Shenandoah National Park, Virginia, 2005-2006

USGS Publications Warehouse

Hyer, Kenneth

2007-01-01

Although fecal contamination of streams is a problem of national scope, few investigations have been directed at relatively pristine streams in forested basins in national parks. With approximately 1.8 million visitors annually, Shenandoah National Park in Virginia is subject to extensive recreational use. The effects of these visitors and their recreational activities on fecal indicator bacteria levels in the streams are poorly understood and of concern for Shenandoah National Park managers. During 2005 and 2006, streams and springs in Shenandoah National Park were sampled for Escherichia coli (E. coli) concentrations. The first study objective was to evaluate the effects of recreational activities on E. coli concentrations in selected streams. Of the 20 streams that were selected, 14 were in basins with extensive recreational activity, and 6 were in control basins where minimal recreational activities occurred. Water-quality sampling was conducted during low-flow conditions during the relatively warm months, as this is when outdoor recreation and bacterial survivorship are greatest. Although most sampling was conducted during low-flow conditions, approximately three stormflow samples were collected from each stream. The second study objective was to evaluate E. coli levels in backcountry drinking-water supplies throughout Shenandoah National Park. Nineteen drinking-water supplies (springs and streams) were sampled two to six times each by Shenandoah National Park staff and analyzed by the U.S. Geological Survey for this purpose. The water-quality sampling results indicated relatively low E. coli concentrations during low-flow conditions, and no statistically significant increase in E. coli concentrations was observed in the recreational streams relative to the control streams. These results indicate that during low-flow conditions, recreational activities had no significant effect on E. coli concentrations. During stormflow conditions, E. coli concentrations increased by nearly a factor of 10 in both basin types, and the Virginia instantaneous water-quality standard for E. coli (235 colonies per 100 milliliters) frequently was exceeded. The sampling results from drinking-water supplies throughout Shenandoah National Park indicated relatively low E. coli concentrations in all springs that were sampled. Several of the streams that were sampled had slightly higher E. coli concentrations relative to the springs, but no E. coli concentrations exceeded the instantaneous water-quality standard. Although E. coli concentrations in all the drinking-water supplies were relatively low, Shenandoah National Park management continues to stress that all hikers must treat drinking water from all streams and springs prior to consumption. After determining that recreational activities in Shenandoah National Park did not have a statistically significant effect on low-flow E. coli concentrations, an additional concern was addressed regarding the quality of the water releases from the wastewater-treatment plants in the park. Sampling of three wastewater-treatment plant outfalls was conducted in 2006 to evaluate their effects on water quality. Samples were analyzed for E. coli and a collection of wastewater organic compounds that may be endocrine disruptors. Relatively elevated E. coli concentrations were observed in 2 of the 3 samples, and between 9 and 13 wastewater organic compounds were detected in the samples, including 3 known and 5 suspected endocrine-disrupting compounds.

Influences of wildfire and channel reorganization on spatial and temporal variation in stream temperature and the distribution of fish and amphibians

USGS Publications Warehouse

Dunham, J.B.; Rosenberger, A.E.; Luce, C.H.; Rieman, B.E.

2007-01-01

Wildfire can influence a variety of stream ecosystem properties. We studied stream temperatures in relation to wildfire in small streams in the Boise River Basin, located in central Idaho, USA. To examine the spatio-temporal aspects of temperature in relation to wildfire, we employed three approaches: a pre-post fire comparison of temperatures between two sites (one from a burned stream and one unburned) over 13 years, a short-term (3 year) pre-post fire comparison of a burned and unburned stream with spatially extensive data, and a short-term (1 year) comparative study of spatial variability in temperatures using a "space for time" substitutive design across 90 sites in nine streams (retrospective comparative study). The latter design included streams with a history of stand-replacing wildfire and streams with severe post-fire reorganization of channels due to debris flows and flooding. Results from these three studies indicated that summer maximum water temperatures can remain significantly elevated for at least a decade following wildfire, particularly in streams with severe channel reorganization. In the retrospective comparative study we investigated occurrence of native rainbow trout (Oncorhynchus mykiss) and tailed frog larvae (Ascaphus montanus) in relation to maximum stream temperatures during summer. Both occurred in nearly every site sampled, but tailed frog larvae were found in much warmer water than previously reported in the field (26.6??C maximum summer temperature). Our results show that physical stream habitats can remain altered (for example, increased temperature) for many years following wildfire, but that native aquatic vertebrates can be resilient. In a management context, this suggests wildfire may be less of a threat to native species than human influences that alter the capacity of stream-living vertebrates to persist in the face of natural disturbance. ?? 2007 Springer Science+Business Media, LLC.

Whirling disease among snake river cutthroat trout in two spring streams in Wyoming

USGS Publications Warehouse

Hubert, W.A.; Joyce, M.P.; Gipson, R.; Zafft, D.; Money, D.; Hawk, D.; Taro, B.

2002-01-01

We assessed endemic age-0 cutthroat trout Oncorhynchus clarki for evidence of pathology associated with Myxobolus cerebralis in two streams formed by springs in western Wyoming. We hypothesized that the location of spawning sites in spring streams would affect the extent of exposure of cutthroat trout fry to M. cerebralis triactinomyxons (tams), occurrence of the parasite in their bodies, and clinical signs of whirling disease. The spring streams were warm relative to nearby streams flowing from the mountains or spawning and emergence of fry was early compared with fish in mountain streams. Tams were abundant early in the summer and clinical signs of whirling disease among age-0 fish were seen as early as mid-June in one stream. There were high densities of tams in one stream, and densities declined with upstream progression from May through July, whereas in the other stream, low densities of tams were observed in the downstream portion early in the summer, and they were not detected in July and August. Age-0 cutthroat trout were abundant; clinical signs of whirling disease were evident, and histological evidence of whirling disease was common in the stream where tams were abundant. Low densities of age-0 cutthroat trout and no clinical signs of whirling disease were observed in the stream where tams were not abundant. Among sentinel fish in the stream with abundant tams, we found extensive occurrence of M. cerebralis, with many fish showing clinical signs and histological evidence of pathology associated with M. cerebralis. The proportion of sentinel fish with clinical and histological signs of whirling disease decreased with upstream progression. In the stream with low tam, densities sentinel fish became infected with M. cerebralis, but there were essentially no clinical signs or histological indications of whirling disease. ?? 2002 by the American Fisheries Society.

Robust audio-visual speech recognition under noisy audio-video conditions.

PubMed

Stewart, Darryl; Seymour, Rowan; Pass, Adrian; Ming, Ji

2014-02-01

This paper presents the maximum weighted stream posterior (MWSP) model as a robust and efficient stream integration method for audio-visual speech recognition in environments, where the audio or video streams may be subjected to unknown and time-varying corruption. A significant advantage of MWSP is that it does not require any specific measurements of the signal in either stream to calculate appropriate stream weights during recognition, and as such it is modality-independent. This also means that MWSP complements and can be used alongside many of the other approaches that have been proposed in the literature for this problem. For evaluation we used the large XM2VTS database for speaker-independent audio-visual speech recognition. The extensive tests include both clean and corrupted utterances with corruption added in either/both the video and audio streams using a variety of types (e.g., MPEG-4 video compression) and levels of noise. The experiments show that this approach gives excellent performance in comparison to another well-known dynamic stream weighting approach and also compared to any fixed-weighted integration approach in both clean conditions or when noise is added to either stream. Furthermore, our experiments show that the MWSP approach dynamically selects suitable integration weights on a frame-by-frame basis according to the level of noise in the streams and also according to the naturally fluctuating relative reliability of the modalities even in clean conditions. The MWSP approach is shown to maintain robust recognition performance in all tested conditions, while requiring no prior knowledge about the type or level of noise.

Artificial barriers prevent genetic recovery of small isolated populations of a low-mobility freshwater fish.

PubMed

Coleman, R A; Gauffre, B; Pavlova, A; Beheregaray, L B; Kearns, J; Lyon, J; Sasaki, M; Leblois, R; Sgro, C; Sunnucks, P

2018-06-01

Habitat loss and fragmentation often result in small, isolated populations vulnerable to environmental disturbance and loss of genetic diversity. Low genetic diversity can increase extinction risk of small populations by elevating inbreeding and inbreeding depression, and reducing adaptive potential. Due to their linear nature and extensive use by humans, freshwater ecosystems are especially vulnerable to habitat loss and fragmentation. Although the effects of fragmentation on genetic structure have been extensively studied in migratory fishes, they are less understood in low-mobility species. We estimated impacts of instream barriers on genetic structure and diversity of the low-mobility river blackfish (Gadopsis marmoratus) within five streams separated by weirs or dams constructed 45-120 years ago. We found evidence of small-scale (<13 km) genetic structure within reaches unimpeded by barriers, as expected for a fish with low mobility. Genetic diversity was lower above barriers in small streams only, regardless of barrier age. In particular, one isolated population showed evidence of a recent bottleneck and inbreeding. Differentiation above and below the barrier (F ST  = 0.13) was greatest in this stream, but in other streams did not differ from background levels. Spatially explicit simulations suggest that short-term barrier effects would not be detected with our data set unless effective population sizes were very small (<100). Our study highlights that, in structured populations, the ability to detect short-term genetic effects from barriers is reduced and requires more genetic markers compared to panmictic populations. We also demonstrate the importance of accounting for natural population genetic structure in fragmentation studies.

Groundwater/surface-water interactions in the Tunk, Bonaparte, Antoine, and Tonasket Creek Subbasins, Okanogan River Basin, North-Central Washington, 2008

USGS Publications Warehouse

Sumioka, S.S.; Dinicola, R.S.

2009-01-01

An investigation into groundwater/surface-water interactions in four tributary subbasins of the Okanogan River determined that streamflows and shallow groundwater levels beneath the streams varied seasonally and by location. Streamflows measured in June 2008 indicated net losses of streamflow along 10 of 17 reaches, and hydraulic gradients measured between streams and shallow groundwater indicated potential recharge of surface water to groundwater at 11 of 21 measurement sites. In September 2008, net losses of streamflow were indicated along 9 of 17 reaches, and potential recharge of surface water to groundwater was indicated at 18 of 21 measurement sites. The greatest losses of streamflow occurred near the confluences with the Okanogan River, likely due to the presence of thick layers of unconsolidated deposits in the flood plain of the Okanogan River. Based on available geologic information compiled from drillers' logs, a surficial geologic map, and streamflow records, the extensive and thick deposits of unconsolidated material in the Tunk and Bonaparte Creek subbasins are factors in sustaining the almost perennial streamflow in those creeks. The less extensive and generally thinner unconsolidated deposits in the Tonasket and Antoine subbasins are contributing factors to the occasional extended periods of zero flow (a dry stream channel) in those creeks. Even though groundwater withdrawals would affect streamflows, relatively low precipitation in the area, along with limited groundwater storage capacity and the presence of permeable, unconsolidated deposits underlying the stream channels, would likely lead to loss of surface water to the groundwater system without any withdrawals.

Real-time video streaming using H.264 scalable video coding (SVC) in multihomed mobile networks: a testbed approach

NASA Astrophysics Data System (ADS)

Nightingale, James; Wang, Qi; Grecos, Christos

2011-03-01

Users of the next generation wireless paradigm known as multihomed mobile networks expect satisfactory quality of service (QoS) when accessing streamed multimedia content. The recent H.264 Scalable Video Coding (SVC) extension to the Advanced Video Coding standard (AVC), offers the facility to adapt real-time video streams in response to the dynamic conditions of multiple network paths encountered in multihomed wireless mobile networks. Nevertheless, preexisting streaming algorithms were mainly proposed for AVC delivery over multipath wired networks and were evaluated by software simulation. This paper introduces a practical, hardware-based testbed upon which we implement and evaluate real-time H.264 SVC streaming algorithms in a realistic multihomed wireless mobile networks environment. We propose an optimised streaming algorithm with multi-fold technical contributions. Firstly, we extended the AVC packet prioritisation schemes to reflect the three-dimensional granularity of SVC. Secondly, we designed a mechanism for evaluating the effects of different streamer 'read ahead window' sizes on real-time performance. Thirdly, we took account of the previously unconsidered path switching and mobile networks tunnelling overheads encountered in real-world deployments. Finally, we implemented a path condition monitoring and reporting scheme to facilitate the intelligent path switching. The proposed system has been experimentally shown to offer a significant improvement in PSNR of the received stream compared with representative existing algorithms.

Impact of stream restoration on flood waves

NASA Astrophysics Data System (ADS)

Sholtes, J.; Doyle, M.

2008-12-01

Restoration of channelized or incised streams has the potential to reduce downstream flooding via storing and dissipating the energy of flood waves. Restoration design elements such as restoring meanders, reducing slope, restoring floodplain connectivity, re-introducing in-channel woody debris, and re-vegetating banks and the floodplain have the capacity to attenuate flood waves via energy dissipation and channel and floodplain storage. Flood discharge hydrographs measured up and downstream of several restored reaches of varying stream order and located in both urban and rural catchments are coupled with direct measurements of stream roughness at various stages to directly measure changes to peak discharge, flood wave celerity, and dispersion. A one-dimensional unsteady flow routing model, HEC-RAS, is calibrated and used to compare attenuation characteristics between pre and post restoration conditions. Modeled sensitivity results indicate that a restoration project placed on a smaller order stream demonstrates the highest relative reduction in peak discharge of routed flood waves compared to one of equal length on a higher order stream. Reductions in bed slope, extensions in channel length, and increases in channel and floodplain roughness follow restoration placement with the watershed in relative importance. By better understanding how design, scale, and location of restored reaches within a catchment hydraulically impact flood flows, this study contributes both to restoration design and site decision making. It also quantifies the effect of reach scale stream restoration on flood wave attenuation.

An ABC transporter B family protein, ABCB19, is required for cytoplasmic streaming and gravitropism of the inflorescence stems.

PubMed

Okamoto, Keishi; Ueda, Haruko; Shimada, Tomoo; Tamura, Kentaro; Koumoto, Yasuko; Tasaka, Masao; Morita, Miyo Terao; Hara-Nishimura, Ikuko

2016-01-01

A significant feature of plant cells is the extensive motility of organelles and the cytosol, which was originally defined as cytoplasmic streaming. We suggested previously that a three-way interaction between plant-specific motor proteins myosin XIs, actin filaments, and the endoplasmic reticulum (ER) was responsible for cytoplasmic streaming. (1) Currently, however, there are no reports of molecular components for cytoplasmic streaming other than the actin-myosin-cytoskeleton and ER-related proteins. In the present study, we found that elongated cells of inflorescence stems of Arabidopsis thaliana exhibit vigorous cytoplasmic streaming. Statistical analysis showed that the maximal velocity of plastid movements is 7.26 µm/s, which is much faster than the previously reported velocities of organelles. Surprisingly, the maximal velocity of streaming in the inflorescence stem cells was significantly reduced to 1.11 µm/s in an Arabidopsis mutant, abcb19-101, which lacks ATP BINDING CASSETTE SUBFAMILY B19 (ABCB19) that mediates the polar transport of the phytohormone auxin together with PIN-FORMED (PIN) proteins. Polar auxin transport establishes the auxin concentration gradient essential for plant development and tropisms. Deficiency of ABCB19 activity eventually caused enhanced gravitropic responses of the inflorescence stems and abnormally flexed inflorescence stems. These results suggest that ABCB19-mediated auxin transport plays a role not only in tropism regulation, but also in cytoplasmic streaming.

Hydrology of the Chicod Creek basin, North Carolina, prior to channel improvements

USGS Publications Warehouse

Simmons, Clyde E.; Aldridge, Mary C.

1980-01-01

Extensive modification and excavation of stream channels in the 6-square mile Chicod Creek basin began in mid-1979 to reduce flooding and improve stream runoff conditions. The effects of channel improvements on this Coastal Pain basin 's hydrology will be determined from data collected prior to, during, and for several years following channel alternations. This report summarizes the findings of data collected prior to these improvements. During the 3-year study period, flow data collected from four stream gaging stations in the basin show that streams are dry approximately 10 percent of the time. Chemical analyses of water samples from the streams and from eight shallow groundwater observation wells indicate that water discharge from the surficial aquifer is the primary source of streamflow during rainless periods. Concentrations of Kjeldahl nitrogen, total nitrogen, and total phosphorus were often 5 to 10 times greater at Chicod Creek sites than those at nearby baseline sites. It is probable that runoff from farming and livestock operations contributes significantly to these elevated concentrations in Chicod Creek. The only pesticides detected in stream water were low levels of DDT and dieldrin, which occurred during storm runoff. A much wider range of pesticides, however, are found associated with streambed materials. The ratio of fecal coliform counts to those of fecal streptococcus indicate that the streams receive fecal wastes from livestock and poultry operations.

The WHAM Hα Magellanic Stream Survey: Progress and Early Results

NASA Astrophysics Data System (ADS)

Smart, Brianna; Haffner, L. Matthew; Barger, Kat; Krishnarao, Dhanesh

2017-01-01

We present early analysis of the Hα survey of the Magellanic Stream using the Wisconsin H-Alpha Mapper (WHAM). The neutral component of the Stream extends some 200° across the sky (Nidever et al. 2010). However, the full extent of the ionized gas has not been mapped in detail. Previous studies (e.g., Putman et al. 2003; Weiner & Williams 1996) suggest that ionized gas is likely to be found all along the length of the Stream, and may extend beyond the current neutral boundaries as traced by 21 cm. Barger et al. (2013) used WHAM to map ionized gas throughout the Magellanic Bridge between the Magellanic Clouds. Although ionized emission tracks the neutral emission for the most part, it often spans a few degrees away from the H I at slightly offset velocities. Additionally, Fox et al. (2014) find evidence in an absorption line study that the tidal debris in the Magellanic System contains twice as much ionized gas as neutral material and may extend 30° away from 21-cm sensitivity boundaries. We are now compiling the first comprehensive picture of the ionized component of the Magellanic Stream using WHAM's unprecedented sensitivity to trace diffuse emission (~tens of mR), its velocity resolution (12 km/s) to separate the Stream from the Milky Way, and its multiwavelength capabilities (e.g., [S II] and [N II]) to examine the physical conditions of the gas. Much of the data along the primary axis of the Stream has been collected for the first phase of this extensive study, a complete kinematic Hα survey of the Stream. We present survey progress, challenges in extracting Stream emission, and first-look kinematic maps at select positions along the Stream.

Biomass of coastal cutthroat trout in unlogged and previously clear-cut basins in the central Coast Range of Oregon

USGS Publications Warehouse

Connolly, P.J.; Hall, J.D.

1999-01-01

Populations of coastal cutthroat trout Oncorhynchus clarki clarki were sampled in 16 Oregon headwater streams during 1991-1993. These streams were above upstream migration barriers and distributed among basins that had been logged 20-30 and 40-60 years ago and basins that had not been logged but had burned 125-150 years ago. The objective of our study was to characterize the populations and habitats of age-1 or older cutthroat trout within these three forest management types. Streams within unlogged basins had relatively low levels and a small range of trout biomass (g/m2). Streams in basins logged 40-60 years ago supported low levels but an intermediate range of trout biomass. Streams in basins logged 20-30 years ago supported the widest range of biomass, including the lowest and highest biomasses among all streams sampled. The variable thai best explained the variation of trout biomass among all 16 streams was the amount of large woody debris (LWD). All streams were heavily shaded during at least part of the year by mostly closed tree canopies. Deciduous trees were more prominent in canopies over streams in logged basins, while conifers were more prominent in the stream canopies of unlogged basins. Our results suggest that trout production in basins extensively clear-cut 20-60 years ago may generally decrease or remain low over the next 50 or more years because of decreasing loads of remnant LWD, persistent low recruitment potential for new LWD, and persistent heavy shading by conifers. These logged basins are not likely to show an increase in trout biomass over the next 50 years unless reset by favorable natural disturbances or by habitat restoration efforts.

Biomass of coastal cutthroat trout in unlogged and previously clearcut basins in the central Coast Range of Oregon

USGS Publications Warehouse

Connolly, P.J.; Hall, J.D.

1999-01-01

Populations of coastal cutthroat trout Oncorhynchus clarki clarki were sampled in 16 Oregon headwater streams during 1991–1993. These streams were above upstream migration barriers and distributed among basins that had been logged 20–30 and 40–60 years ago and basins that had not been logged but had burned 125–150 years ago. The objective of our study was to characterize the populations and habitats of age-1 or older cutthroat trout within these three forest management types. Streams within unlogged basins had relatively low levels and a small range of trout biomass (g/m2). Streams in basins logged 40–60 years ago supported low levels but an intermediate range of trout biomass. Streams in basins logged 20–30 years ago supported the widest range of biomass, including the lowest and highest biomasses among all streams sampled. The variable that best explained the variation of trout biomass among all 16 streams was the amount of large woody debris (LWD). All streams were heavily shaded during at least part of the year by mostly closed tree canopies. Deciduous trees were more prominent in canopies over streams in logged basins, while conifers were more prominent in the stream canopies of unlogged basins. Our results suggest that trout production in basins extensively clear-cut 20–60 years ago may generally decrease or remain low over the next 50 or more years because of decreasing loads of remnant LWD, persistent low recruitment potential for new LWD, and persistent heavy shading by conifers. These logged basins are not likely to show an increase in trout biomass over the next 50 years unless reset by favorable natural disturbances or by habitat restoration efforts.

Ecological restoration

Treesearch

Christopher D. Barton; John I. Blake; Donald W. Imm

2005-01-01

The long history of human settlement, agriculture, and industry at the Savannah River Site (SRS) has created extensive opportunities for ecological restoration. Two hundred years of farming, drainage, dam construction, stream channeling, fire protection, subsistence hunting and fishing, exotic animal and plant introduction, and selective timber harvesting have caused...

Effects of urban development in the Puget Lowland, Washington, on interannual streamflow patterns: Consequences for channel form and streambed disturbance

USGS Publications Warehouse

Konrad, Christopher P.; Booth, Derek B.; Burges, Stephen J.

2005-01-01

Recovery and protection of streams in urban areas depend on a comprehensive understanding of how human activities affect stream ecosystems. The hydrologic effects of urban development and the consequences for stream channel form and streambed stability were examined in 16 streams in the Puget Lowland, Washington, using three streamflow metrics that integrate storm‐scale effects of urban development over annual to decadal timescales: the fraction of time that streamflow exceeds the mean streamflow (TQmean), the coefficient of variation of annual maximum streamflow (CVAMF), and the fraction of time that streamflow exceeds the 0.5‐year flood (T0.5). Urban streams had low interannual variability in annual maximum streamflow and brief duration of frequent high flows, as indicated by significant correlations between road density and both CVAMFand T0.5. The broader distribution of streamflow indicated by TQmean may be affected by urban development, but differences in TQmean between streams are also likely a result of other physiographic factors. The increase in the magnitude of frequent high flows due to urban development but not their cumulative duration has important consequences for channel form and bed stability in gravel bed streams because geomorphic equilibrium depends on moderate duration streamflow (e.g., exceeded 10% of the time). Streams with low values of TQmean and T0.5 are narrower than expected from hydraulic geometry. Dimensionless boundary shear stress (t*) for the 0.5‐year flood was inversely related to T0.5 among the streams, indicating frequent and extensive bed disturbance in streams with low values of T0.5. Although stream channels expand and the size of bed material increases in response to urban streamflow patterns, these adjustments may be insufficient to reestablish the disturbance regime in urban streams because of the differential increase in the magnitude of frequent high flows causing disturbance relative to any changes in longer duration, moderate flows that establish a stable channel.

Data on the solute concentration within the subsurface flows of Little Lost Man Creek in response to a transport experiment, Redwood National Park, northwest California

USGS Publications Warehouse

Zellweger, Gary W.; Kennedy, V.C.; Bencala, K.E.; Avanzino, R.J.; Jackman, A.P.; Triska, F.J.

1986-01-01

A solute transport experiment was conducted on a 327-m reach of Little Lost Man Creek, a small stream in Humboldt County, California. Solutes were injected for 20 days. Chloride was used as a conservative tracer; lithium, potassium, and strontium were used as reactive tracers. In addition, nitrate and phosphate were added as biological reactants. Eighteen shallow wells were dug along the length of the study reach, 1-10 m laterally from the edge of the stream. The wells and sites in the stream were monitored for the injected solutes during and after the injection. Solute concentrations in the wells and stream are indicative of transport properties of stream and subsurface channel flow. This report presents the results of the analyses of the well samples and chemical data relevant to the interpretation of hydrological and chemical interaction between the stream and adjacent channel subsurface flows in the streambed. Calculations of the percentage of streamwater in the wellwater were made from conservative tracer measurements. The composition of wellwater ranged from 47% to 100% streamwater with most values above 90%. The time for water to travel from the beginning of the study reach to the wells was approximately three times as great as the travel time in the stream at the same distance down the reach. The three conclusions that can be drawn are (1) water in the stream exchanges extensively with water in the rest of the channel; (2) the interstitial water in the channel gravels achieves almost the same composition as the stream; and (3) under low flow conditions the stream gravels contain a significant portion of the stream volume. Plots of normalized chloride, lithium, and strontium concentrations at three stream sites are included. (Author 's abstract)

NASA Data Acquisition System Software Development for Rocket Propulsion Test Facilities

NASA Technical Reports Server (NTRS)

Herbert, Phillip W., Sr.; Elliot, Alex C.; Graves, Andrew R.

2015-01-01

Current NASA propulsion test facilities include Stennis Space Center in Mississippi, Marshall Space Flight Center in Alabama, Plum Brook Station in Ohio, and White Sands Test Facility in New Mexico. Within and across these centers, a diverse set of data acquisition systems exist with different hardware and software platforms. The NASA Data Acquisition System (NDAS) is a software suite designed to operate and control many critical aspects of rocket engine testing. The software suite combines real-time data visualization, data recording to a variety formats, short-term and long-term acquisition system calibration capabilities, test stand configuration control, and a variety of data post-processing capabilities. Additionally, data stream conversion functions exist to translate test facility data streams to and from downstream systems, including engine customer systems. The primary design goals for NDAS are flexibility, extensibility, and modularity. Providing a common user interface for a variety of hardware platforms helps drive consistency and error reduction during testing. In addition, with an understanding that test facilities have different requirements and setups, the software is designed to be modular. One engine program may require real-time displays and data recording; others may require more complex data stream conversion, measurement filtering, or test stand configuration management. The NDAS suite allows test facilities to choose which components to use based on their specific needs. The NDAS code is primarily written in LabVIEW, a graphical, data-flow driven language. Although LabVIEW is a general-purpose programming language; large-scale software development in the language is relatively rare compared to more commonly used languages. The NDAS software suite also makes extensive use of a new, advanced development framework called the Actor Framework. The Actor Framework provides a level of code reuse and extensibility that has previously been difficult to achieve using LabVIEW. The

Transport and concentration controls for chloride, strontium, potassium and lead in Uvas Creek, a small cobble-bed stream in Santa Clara County, California, U.S.A. 1. Conceptual model

USGS Publications Warehouse

Kennedy, V.C.; Jackman, A.P.; Zand, S.M.; Zellweger, G.W.; Avanzino, R.J.

1984-01-01

Stream sediments adsorb certain solutes from streams, thereby significantly changing the solute composition; but little is known about the details and rates of these adsorptive processes. To investigate such processes, a 24-hr. injection of a solution containing chloride, strontium, potassium, sodium and lead was made at the head of a 640-m reach of Uvas Creek in west-central Santa Clara County, California. Uvas Creek is a cobble-bed pool-and-riffle stream draining the eastern slopes of the Santa Cruz Mountains. By September 12, 1973, after a long dry season, Uvas Creek had a low (0.0215 m3s-1 average) flow which varied diurnally, from 0.018 to 0.025 m3s-1. Because stream discharge varied while the injection rate was constant, the concentration of tracers (injected solutes), after mixing in the stream, varied inversely with discharge. Chloride, a nonreactive solute, served as a tracer of water movement. Analysis of extensive chloride concentration data at five sites below the injection point during and after the injection demonstrated that there was considerable underflow of water through the stream gravels; however, the extent of underflow varied greatly within the study reach. Pre-injection water, displaced by tracer-laden water percolating through the gravels, diluted tracers in the stream channel, giving the mistaken impression of groundwater inflow at some points. Accurate measurement of total discharge in such streams requires prolonged tracer injection unless a reach can be found where underflow is negligible. Strontium and potassium were adsorbed by the bed sediments to a moderate extent and lead was strongly adsorbed. A high proportion of these metals could be removed by adsorption from percolating underflow because of extensive and intimate contact with bed sediments. After channel clearing following injection cutoff, 51% of the added strontium and 96% of the lead remained in the study reach, whereas only 19% of the chloride remained. Packets of sized sediment, placed in the stream before the experiment and withdrawn during and after the injection, indicated that the strontium absorbed on the 0.42-0.50-mm size sediment appeared to achieve near equilibrium with dissolved strontium within less than 2 hr. whereas 3.4-4.0-mm grains had not reached that stage after 24 hr. The cation-exchange capacity (CEC) of the sediments shows a "bimodal" distribution with grain size. Largest values are in the finest sizes, lower values in the fine-to-medium sand-size range, intermediate values in the coarse- to very coarse-grained sand, and decreasing values with size above very coarse-grained sand. This considerable exchange capacity in coarse-sand to granule-size particles means that a streambed, that has not been infilled with fines to reduce permeability, can be highly reactive and accessible throughout a rather thick sediment layer and hence have a large and available reactive capacity. As stream discharge increases from low flow, the ratio of underflow to channel flow should decrease rapidly with resultant diminution in percent of solutes sorbed within a particular stream reach. ?? 1984.

Surface-water and groundwater interactions in an extensively mined watershed, upper Schuylkill River, Pennsylvania, USA

USGS Publications Warehouse

Cravotta, Charles A.; Goode, Daniel J.; Bartles, Michael D.; Risser, Dennis W.; Galeone, Daniel G.

2014-01-01

Streams crossing underground coal mines may lose flow, while abandoned mine drainage (AMD) restores flow downstream. During 2005-12, discharge from the Pine Knot Mine Tunnel, the largest AMD source in the upper Schuylkill River Basin, had near-neutral pH and elevated concentrations of iron, manganese, and sulfate. Discharge from the tunnel responded rapidly to recharge but exhibited a prolonged recession compared to nearby streams, consistent with rapid infiltration and slow release of groundwater from the mine. Downstream of the AMD, dissolved iron was attenuated by oxidation and precipitation while dissolved CO2 degassed and pH increased. During high-flow conditions, the AMD and downstream waters exhibited decreased pH, iron, and sulfate with increased acidity that were modeled by mixing net-alkaline AMD with recharge or runoff having low ionic strength and low pH. Attenuation of dissolved iron within the river was least effective during high-flow conditions because of decreased transport time coupled with inhibitory effects of low pH on oxidation kinetics. A numerical model of groundwater flow was calibrated using groundwater levels in the Pine Knot Mine and discharge data for the Pine Knot Mine Tunnel and the West Branch Schuylkill River during a snowmelt event in January 2012. Although the calibrated model indicated substantial recharge to the mine complex took place away from streams, simulation of rapid changes in mine pool level and tunnel discharge during a high flow event in May 2012 required a source of direct recharge to the Pine Knot Mine. Such recharge produced small changes in mine pool level and rapid changes in tunnel flow rate because of extensive unsaturated storage capacity and high transmissivity within the mine complex. Thus, elimination of stream leakage could have a small effect on the annual discharge from the tunnel, but a large effect on peak discharge and associated water quality in streams.

Fall and winter habitat use and movement by Columbia River redband trout in a small stream in Montana

USGS Publications Warehouse

Muhlfeld, Clint C.; Bennett, David H.; Marotz, B.

2001-01-01

We used radiotelemetry to quantify the movements and habitat use of resident adult Columbia River redband trout Oncorhynchus mykiss gairdneri (hereafter, redband trout) from October to December 1997 in South Fork Callahan Creek, a third-order tributary to Callahan Creek in the Kootenai River drainage in northwestern Montana. All redband trout (N = 23) were consistently relocated in a stream reach with moderate gradient (2.3%) near the site of original capture. Some fish (N = 13) displayed sedentary behavior, whereas others were mobile (N = 10). The mean total distance moved during the study for all fish combined was 64 m (SD = 105 m; range, 0–362 m), and the mean home range from October through December was 67 m (SD = 99 m; range, 5–377 m). Thirteen redband trout made short upstream and downstream movements (mean total movement = 134 m; range, 8–362 m) that were related to habitat use. Mobile fish commonly migrated to complex pools that spanned the entire channel width (primary pools). Eight of 10 fish that did not change habitat location occupied primary pools, whereas the remaining 2 fish occupied lateral pools. Fish commonly overwintered in primary pools dominated by cobble and boulder substrates that contained large woody debris. As water temperatures decreased from 3.2–6.3°C in October to 0–3.8°C in November and December, we found a 29% average increase (46–75%) in the proportional use of primary pool habitats. The lack of extensive movement and small home ranges indicate that adult redband trout found suitable overwintering habitat in deep pools with extensive amounts of cover within a third-order mountain stream. Resource managers who wish to protect overwintering habitat features preferred by redband trout throughout their limited range in streams affected by land management practices could apply strategies that protect and enhance pool habitat and stream complexity.

Glacially-megalineated limestone terrain of Anticosti Island, Gulf of St. Lawrence, Canada; onset zone of the Laurentian Channel Ice Stream

NASA Astrophysics Data System (ADS)

Eyles, Nick; Putkinen, Niko

2014-03-01

Anticosti is a large elongate island (240 km long, 60 km wide) in eastern Canada within the northern part of a deep water trough (Gulf of St. Lawrence) that terminates at the Atlantic continental shelf edge. The island's Pleistocene glaciological significance is that its long axis lay transverse to ice from the Quebec and Labrador sectors of the Laurentide Ice Sheet moving south from the relatively high-standing Canadian Shield. Recent glaciological reconstructions place a fast-flowing ice stream along the axis of the Gulf of St. Lawrence but supporting geologic evidence in terms of recognizing its hard-bedded onset zone and downstream streamlined soft bed is limited. Anticosti Island consists of gently southward-dipping limestone plains composed of Ordovician and Silurian limestones (Vaureal, Becscie and Jupiter formations) with north-facing escarpments transverse to regional ice flow. Glacial deposits are largely absent and limestone plains in the higher central plateau of the island retain a relict apparently ‘preglacial’ drainage system consisting of deeply-incised dendritic bedrock valleys. In contrast, the bedrock geomorphology of the lower lying western and eastern limestone plains of the island is strikingly different having been extensively modified by glacial erosion. Escarpments are glacially megalineated with a distinct ‘zig-zag’ planform reflecting northward-projecting bullet-shaped ‘noses’ (identified as rock drumlins) up to 2 km wide at their base and 4 km in length with rare megagrooved upper surfaces. Drumlins are separated by southward-closing, funnel-shaped ‘through valleys’ where former dendritic valleys have been extensively altered by the streaming of basal ice through gaps in the escarpments. Glacially-megalineated bedrock terrain such as on the western and eastern flanks of Anticosti Island is elsewhere associated with the hard-bedded onset zones of fast flowing ice streams and provides important ground truth for the postulated Laurentian Channel Ice Stream (LCIS) within the Gulf of St. Lawrence sector of the Laurentide Ice Sheet.

Metal contamination and post-remediation recovery in the Boulder River watershed, Jefferson County, Montana

USGS Publications Warehouse

Unruh, Daniel M.; Church, Stanley E; Nimick, David A.; Fey, David L.

2009-01-01

The legacy of acid mine drainage and toxic trace metals left in streams by historical mining is being addressed by many important yet costly remediation efforts. Monitoring of environmental conditions frequently is not performed but is essential to evaluate remediation effectiveness, determine whether clean-up goals have been met, and assess which remediation strategies are most effective. Extensive pre- and post-remediation data for water and sediment quality for the Boulder River watershed in southwestern Montana provide an unusual opportunity to demonstrate the importance of monitoring. The most extensive restoration in the watershed occurred at the Comet mine on High Ore Creek and resulted in the most dramatic improvement in aquatic habitat. Removal of contaminated sediment and tailings, and stream-channel reconstruction reduced Cd and Zn concentrations in water such that fish are now present, and reduced metal concentrations in streambed sediment by a factor of c. 10, the largest improvement in the district. Waste removals at the Buckeye/Enterprise and Bullion mine sites produced limited or no improvement in water and sediment quality, and acidic drainage from mine adits continues to degrade stream aquatic habitat. Recontouring of hillslopes that had funnelled runoff into the workings of the Crystal mine substantially reduced metal concentrations in Uncle Sam Gulch, but did not eliminate all of the acidic adit drainage. Lead isotopic evidence suggests that the Crystal mine rather than the Comet mine is now the largest source of metals in streambed sediment of the Boulder River. The completed removal actions prevent additional contaminants from entering the stream, but it may take many years for erosional processes to diminish the effects of contaminated sediment already in streams. Although significant strides have been made, additional efforts to seal draining adits or treat the adit effluent at the Bullion and Crystal mines would need to be completed to achieve the desired restoration.

Doppler flow imaging of cytoplasmic streaming using spectral domain phase microscopy

NASA Astrophysics Data System (ADS)

Choma, Michael A.; Ellerbee, Audrey K.; Yazdanfar, Siavash; Izatt, Joseph A.

2006-03-01

Spectral domain phase microscopy (SDPM) is a function extension of spectral domain optical coherence tomography. SDPM achieves exquisite levels of phase stability by employing common-path interferometry. We discuss the theory and limitations of Doppler flow imaging using SDPM, demonstrate monitoring the thermal contraction of a glass sample with nanometer per second velocity sensitivity, and apply this technique to measurement of cytoplasmic streaming in an Amoeba proteus pseudopod. We observe reversal of cytoplasmic flow induced by extracellular CaCl2, and report results that suggest parabolic flow of cytoplasm in the A. proteus pseudopod.

Using Predictability for Lexical Segmentation

ERIC Educational Resources Information Center

Çöltekin, Çagri

2017-01-01

This study investigates a strategy based on predictability of consecutive sub-lexical units in learning to segment a continuous speech stream into lexical units using computational modeling and simulations. Lexical segmentation is one of the early challenges during language acquisition, and it has been studied extensively through psycholinguistic…

Consequences of tetracycline exposure to stream periphyton in an experimental mesocosm study

EPA Science Inventory

A significant amount of ingested, injected, and applied antibiotics are not metabolized but are excreted; entering the environment via point and non-point sources. Tetracycline and its derivatives are among the most extensively used human and animal antibiotics. We examined the ...

Sediment and nutrient delivery from thermokarst features in the foothills of the North Slope, Alaska: Potential impacts on headwater stream ecosystems

USGS Publications Warehouse

Bowden, W.B.; Gooseff, M.N.; Balser, A.; Green, A.; Peterson, B.J.; Bradford, J.

2008-01-01

Permafrost is a defining characteristic of the Arctic environment. However, climate warming is thawing permafrost in many areas leading to failures in soil structure called thermokarst. An extensive survey of a 600 km2 area in and around the Toolik Lake Natural Research Area (TLNRA) revealed at least 34 thermokarst features, two thirds of which were new since ???1980 when a high resolution aerial survey of the area was done. Most of these thermokarst features were associated with headwater streams or lakes. We have measured significantly increased sediment and nutrient loading from thermokarst features to streams in two well-studied locations near the TLNRA. One small thermokarst gully that formed in 2003 on the Toolik River in a 0.9 km2 subcatchment delivered more sediment to the river than is normally delivered in 18 years from 132 km2 in the adjacent upper Kuparuk River basin (a long-term monitoring reference site). Ammonium, nitrate, and phosphate concentrations downstream from a thermokarst feature on Imnavait Creek increased significantly compared to upstream reference concentrations and the increased concentrations persisted over the period of sampling (1999-2005). The downstream concentrations were similar to those we have used in a long-term experimental manipulation of the Kuparuk River and that have significantly altered the structure and function of that river. A subsampling of other thermokarst features from the extensive regional survey showed that concentrations of ammonium, nitrate, and phosphate were always higher downstream of the thermokarst features. Our previous research has shown that even minor increases in nutrient loading stimulate primary and secondary production. However, increased sediment loading could interfere with benthic communities and change the responses to increased nutrient delivery. Although the terrestrial area impacted by thermokarsts is limited, the aquatic habitat altered by these failures can be extensive. If warming in the Arctic foothills accelerates thermokarst formation, there may be substantial and wide-spread impacts on arctic stream ecosystems that are currently poorly understood. Copyright 2008 by the American Geophysical Union.

SCTP as scalable video coding transport

NASA Astrophysics Data System (ADS)

Ortiz, Jordi; Graciá, Eduardo Martínez; Skarmeta, Antonio F.

2013-12-01

This study presents an evaluation of the Stream Transmission Control Protocol (SCTP) for the transport of the scalable video codec (SVC), proposed by MPEG as an extension to H.264/AVC. Both technologies fit together properly. On the one hand, SVC permits to split easily the bitstream into substreams carrying different video layers, each with different importance for the reconstruction of the complete video sequence at the receiver end. On the other hand, SCTP includes features, such as the multi-streaming and multi-homing capabilities, that permit to transport robustly and efficiently the SVC layers. Several transmission strategies supported on baseline SCTP and its concurrent multipath transfer (CMT) extension are compared with the classical solutions based on the Transmission Control Protocol (TCP) and the Realtime Transmission Protocol (RTP). Using ns-2 simulations, it is shown that CMT-SCTP outperforms TCP and RTP in error-prone networking environments. The comparison is established according to several performance measurements, including delay, throughput, packet loss, and peak signal-to-noise ratio of the received video.

Mapping tree and impervious cover using Ikonos imagery: links with water quality and stream health

NASA Astrophysics Data System (ADS)

Wright, R.; Goetz, S. J.; Smith, A.; Zinecker, E.

2002-12-01

Precision georeferened Ikonos satellite imagery was used to map tree cover and impervious surface area in Montgomery county Maryland. The derived maps were used to assess riparian zone stream buffer tree cover and to predict, with multivariate logistic regression, stream health ratings across 246 small watersheds averaging 472 km2 in size. Stream health was assessed by state and county experts using a combination of physical measurements (e.g., dissolved oxygen) and biological indicators (e.g., benthic macroinvertebrates). We found it possible to create highly accurate (90+ per cent) maps of tree and impervious cover using decision tree classifiers, provided extensive field data were available for algorithm training. Impervious surface area was found to be the primary predictor of stream health, followed by tree cover in riparian buffers, and total tree cover within entire watersheds. A number of issues associated with mapping using Ikonos imagery were encountered, including differences in phenological and atmospheric conditions, shadowing within canopies and between scene elements, and limited spectral discrimination of cover types. We report on both the capabilities and limitations of Ikonos imagery for these applications, and considerations for extending these analyses to other areas.

Geochemistry of the Mattole River in Northern California

USGS Publications Warehouse

Kennedy, Vance C.; Malcolm, Ronald L.

1977-01-01

The chemical composition of streams can vary greatly with changing discharge during storm runoff. These chemical changes are related to the pathways of various water parcels from the time they fall as rain until they enter the stream, and to the interactions between water and sediment during transport downstream. In order to understand better the chemical variations during storms, an extensive investigation was made of the Mattole River, a chemically clean coastal stream in Mendocino County, California. The Mattole drains a topographically mature basin of 620 sw km which has relief of about 1200 m, a long summer dry season, and mean annual rainfall of about 2300 mm. The stream flow is composed of seasonally varying proportions of four flow components, namely, surface runoff, quick-return flow (rainfall having brief and intimate contact with the soil before entering the surface drainage), delayed-return flow, and base runoff. Each component is identified by its characteristic chemistry and by the time delay between rainfall and entrance into the stream. Information is also presented on rain chemistry, adsorption reactions of suspended sediments in the fresh and brackish environments, and compositional variation of river sediments with particle size. (Woodard-USGS)

Adaptations to vision-for-action in primate brain evolution: Comment on "Towards a Computational Comparative Neuroprimatology: Framing the language-ready brain" by Michael A. Arbib

NASA Astrophysics Data System (ADS)

Hecht, Erin

2016-03-01

As Arbib [1] notes, the two-streams hypothesis [5] has provided a powerful explanatory framework for understanding visual processing. The inferotemporal ventral stream recognizes objects and agents - ;what; one is seeing. The dorsal ;how; or ;where; stream through parietal cortex processes motion, spatial location, and visuo-proprioceptive relationships - ;vision for action.; Hickock and Poeppel's [3] extension of this model to the auditory system raises the question of deeper, multi- or supra-sensory themes in dorsal vs. ventral processing. Petrides and Pandya [10] postulate that the evolution of language may have been influenced by the fact that the dorsal stream terminates in posterior Broca's area (BA44) while the ventral stream terminates in anterior Broca's area (BA45). In an intriguing potential parallel, a recent ALE metanalysis of 54 fMRI studies found that semantic processing is located more anteriorly and superiorly than syntactic processing in Broca's area [13]. But clearly, macaques do not have language, nor other likely pre- or co-adaptations to language, such as complex imitation and tool use. What changed in the brain that enabled these functions to evolve?

Did ice streams carve martian outflow channels?

USGS Publications Warehouse

Lucchitta, B.K.; Anderson, D.M.; Shoji, H.

1981-01-01

Outflow channels on Mars1 are long sinuous linear depressions that occur mostly in the equatorial area (??30?? lat.). They differ from small valley networks2 by being larger and arising full born from chaotic terrains. Outflow channels resemble terrestrial stream beds, and their origin has generally been attributed to water3-5 in catastrophic floods6,7 or mudflows8. The catastrophic-flood hypothesis is derived primarily from the morphological similarities of martian outflow channels and features created by the catastrophic Spokane flood that formed the Washington scablands. These similarities have been documented extensively3,6,7, but differences of scale remain a major problemmartian channel features are on the average much larger than their proposed terrestrial analogues. We examine here the problem of channel origin from the perspective of erosional characteristics and the resultant landf orms created by former and present-day ice streams and glaciers on Earth. From morphologic comparisons, an ice-stream origin seems equally well suited to explain the occurrences and form of the outflow channels on Mars, and in contrast with the hydraulic hypothesis, ice streams and ice sheets produce terrestrial features of the same scale as those observed on Mars. ?? 1981 Nature Publishing Group.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Graves, Suzy

Ranking criteria were developed to rate 19 tributaries on the Coeur d`Alene Indiana Reservation for potential of habitat enhancement for westslope cutthroat trout, Oncorhynchus clarki lewisi, and bull trout, Salvelinus malma. Cutthroat and bull trout habitat requirements, derived from an extensive literature review of each species, were compared to the physical and biological parameters of each stream observed during an aerial -- helicopter survey. Ten tributaries were selected for further study, using the ranking criteria that were derived. The most favorable ratings were awarded to streams that were located completely on the reservation, displayed highest potential for improvement and enhancement,more » had no barriers to fish migration, good road access, and a gradient acceptable to cutthroat and bull trout habitation. The ten streams selected for study were Bellgrove, Fighting, Lake, Squaw, Plummer, Little Plummer, Benewah, Alder, Hell`s Gulch and Evans creeks.« less

Coronal holes and high-speed wind streams

NASA Technical Reports Server (NTRS)

Zirker, J. B.

1977-01-01

Coronal holes, regions of unusually low density and low temperature in the solar corona, are identified as Bartel's M regions, i.e., sources of high-speed wind streams that produce recurrent geomagnetic variations. Throughout the Skylab period the polar caps of the sun were coronal holes, and at lower latitudes the most persistent and recurrent holes were equatorial extensions of the polar caps. The holes rotated 'rigidly' at the equatorial synodic rate. They formed in regions of unipolar photospheric magnetic field, and their internal magnetic fields diverged rapidly with increasing distance from the sun. The geometry of the magnetic field in the inner corona seems to control both the physical properties of the holes and the global distribution of high-speed wind streams in the heliosphere. Phenomenological models for the birth and decay of coronal holes have been proposed.

Effects of habitat fragmentation on a stream-dwelling species, the flattened musk turtle Sternotherus depressus

USGS Publications Warehouse

Dodd, C.K.

1990-01-01

The flattened musk turtle Sternotherus depressus has disappeared from more than half of its former range because of habitat modifications to stream and river channels in the Warrior River Basin, Alabama. Only 6·9% of its probable historic range contains relatively healthy populations, and most populations are fragmented by extensive areas of unsuitable habitat. Turtles in the best remaining habitats continue to be vulnerable to disease and human-related disturbance, collecting and habitat modification. These factors lead to population declines and abnormal population structure. Habitat fragmentation, especially in small populations, increases vulnerability to human-caused catastrophes and demographic accidents, and could lead to eventual extinction. The threats facing fragmented populations of this turtle probably parallel those affecting many other stream-dwelling species throughout the southeastern United States.

Rotary motions and convection as a means of regulating primary production in warm core rings. [of ocean currents

NASA Technical Reports Server (NTRS)

Yentsch, C. S.; Phinney, D. A.

1985-01-01

The term 'ring' is generally used in the case of a subdivision of ocean eddies. in the present investigation, it denotes mesoscale features which are spawned by the Gulf Stream. This investigation is concerned with the mechanism involved in the regulation of the growth of phytoplankton by the physical oceanographic features of rings. Gulf Stream rings were first observed by Parker (1971) and Fuglister (1972) as a result of extensive temperature measurements from ships in the Gulf Stream. Attention is given to changes in density boundaries associated with the rotation of rings, a synthetic model of a newly formed warm core ring, convection-stabilization, the role of light, the influence of convective overturn in adding nutrients to surface waters of warm core rings, and two major areas which require study.

Stream Temperature Estimation From Thermal Infrared Images

NASA Astrophysics Data System (ADS)

Handcock, R. N.; Kay, J. E.; Gillespie, A.; Naveh, N.; Cherkauer, K. A.; Burges, S. J.; Booth, D. B.

2001-12-01

Stream temperature is an important water quality indicator in the Pacific Northwest where endangered fish populations are sensitive to elevated water temperature. Cold water refugia are essential for the survival of threatened salmon when events such as the removal of riparian vegetation result in elevated stream temperatures. Regional assessment of stream temperatures is limited by sparse sampling of temperatures in both space and time. If critical watersheds are to be properly managed it is necessary to have spatially extensive temperature measurements of known accuracy. Remotely sensed thermal infrared (TIR) imagery can be used to derive spatially distributed estimates of the skin temperature (top 100 nm) of streams. TIR imagery has long been used to estimate skin temperatures of the ocean, where split-window techniques have been used to compensate for atmospheric affects. Streams are a more complex environment because 1) most are unresolved in typical TIR images, and 2) the near-bank environment of stream corridors may consist of tall trees or hot rocks and soils that irradiate the stream surface. As well as compensating for atmospheric effects, key problems to solve in estimating stream temperatures include both subpixel unmixing and multiple scattering. Additionally, fine resolution characteristics of the stream surface such as evaporative cooling due to wind, and water surface roughness, will effect measurements of radiant skin temperatures with TIR devices. We apply these corrections across the Green River and Yakima River watersheds in Washington State to assess the accuracy of remotely sensed stream surface temperature estimates made using fine resolution TIR imagery from a ground-based sensor (FLIR), medium resolution data from the airborne MASTER sensor, and coarse-resolution data from the Terra-ASTER satellite. We use linear spectral mixture analysis to isolate the fraction of land-leaving radiance originating from unresolved streams. To compensate the data for atmospheric effects we combine radiosonde profiles with a physically based radiative transfer model (MODTRAN) and an in-scene relative correction adapted from the ISAC algorithm. Laboratory values for water emissivities are used as a baseline estimate of stream emissivities. Emitted radiance reflected by trees in the stream near-bank environment is estimated from the height and canopy temperature, using a radiosity model.

Stream Intermittency Sensors Monitor the Onset and Duration of Stream Flow Along a Channel Network During Storms

NASA Astrophysics Data System (ADS)

Jensen, C.; McGuire, K. J.

2017-12-01

Headwater streams are spatially extensive, accounting for a majority of global stream length, and supply downstream water bodies with water, sediment, organic matter, and pollutants. Much of this transmission occurs episodically during storms when stream flow and connectivity are high. Many headwaters are temporary streams that expand and contract in length in response to storms and seasonality. Understanding where and when streams carry flow is critical for conserving headwaters and protecting downstream water quality, but storm events are difficult to study in small catchments. The rise and fall of stream flow occurs rapidly in headwaters, making observation of the entire stream network difficult. Stream intermittency sensors that detect the presence or absence of water can reveal wetting and drying patterns over short time scales. We installed 50 intermittency sensors along the channel network of a small catchment (35 ha) in the Valley and Ridge of southwest Virginia. Previous work shows stream length is highly variable in this shale catchment, as the drainage density spans two orders of magnitude. The sensors record data every 15 minutes for one year to capture different seasons, antecedent moisture conditions, and precipitation rates. We seek to determine whether hysteresis between stream flow and network length occurs on the rising and falling limbs of events and if reach-scale characteristics such as valley width explain spatial patterns of flow duration. Our results indicate reaches with a wide, sediment-filled valley floor carry water for shorter periods of time than confined channel segments with steep valley side slopes. During earlier field mapping surveys, we only observed flow in a few of the tributaries for the wettest conditions mapped. The sensors now show that these tributaries flow more frequently during much smaller storms, but only for brief periods of time (< 1 hour). The high temporal sampling resolution of the sensors permits a more realistic estimate of flow duration in temporary streams, which field surveys may, otherwise, underestimate. Such continuous datasets on stream network length will allow researchers to more accurately assess the value of headwater reaches for contributions to environmental services such as aquatic habitat, hyporheic exchange, and mass fluxes of solutes.

Controls on stream network branching angles, tested using landscape evolution models

NASA Astrophysics Data System (ADS)

Theodoratos, Nikolaos; Seybold, Hansjörg; Kirchner, James W.

2016-04-01

Stream networks are striking landscape features. The topology of stream networks has been extensively studied, but their geometry has received limited attention. Analyses of nearly 1 million stream junctions across the contiguous United States [1] have revealed that stream branching angles vary systematically with climate and topographic gradients at continental scale. Stream networks in areas with wet climates and gentle slopes tend to have wider branching angles than in areas with dry climates or steep slopes, but the mechanistic linkages underlying these empirical correlations remain unclear. Under different climatic and topographic conditions different runoff generation mechanisms and, consequently, transport processes are dominant. Models [2] and experiments [3] have shown that the relative strength of channel incision versus diffusive hillslope transport controls the spacing between valleys, an important geometric property of stream networks. We used landscape evolution models (LEMs) to test whether similar factors control network branching angles as well. We simulated stream networks using a wide range of hillslope diffusion and channel incision parameters. The resulting branching angles vary systematically with the parameters, but by much less than the regional variability in real-world stream networks. Our results suggest that the competition between hillslope and channeling processes influences branching angles, but that other mechanisms may also be needed to account for the variability in branching angles observed in the field. References: [1] H. Seybold, D. H. Rothman, and J. W. Kirchner, 2015, Climate's watermark in the geometry of river networks, Submitted manuscript. [2] J. T. Perron, W. E. Dietrich, and J. W. Kirchner, 2008, Controls on the spacing of first-order valleys, Journal of Geophysical Research, 113, F04016. [3] K. E. Sweeney, J. J. Roering, and C. Ellis, 2015, Experimental evidence for hillslope control of landscape scale, Science, 349(6243), 51-53.

Structure, transport, and vertical coherence of the Gulf Stream from the Straits of Florida to the Southeast Newfoundland Ridge

NASA Astrophysics Data System (ADS)

Meinen, Christopher S.; Luther, Douglas S.

2016-06-01

Data from three independent and extensive field programs in the Straits of Florida, the Mid-Atlantic Bight, and near the Southeast Newfoundland Ridge are reanalyzed and compared with results from other historical studies to highlight the downstream evolution of several characteristics of the Gulf Stream's mean flow and variability. The three locations represent distinct dynamical regimes: a tightly confined jet in a channel; a freely meandering jet; and a topographically controlled jet on a boundary. Despite these differing dynamical regimes, the Gulf Stream in these areas exhibits many similarities. There are also anticipated and important differences, such as the loss of the warm core of the current by 42°N and the decrease in the cross-frontal gradient of potential vorticity as the current flows northward. As the Gulf Stream evolves it undergoes major changes in transport, both in magnitude and structure. The rate of inflow up to 60°W and outflow thereafter are generally uniform, but do exhibit some remarkable short-scale variations. As the Gulf Stream flows northward the vertical coherence of the flow changes, with the Florida Current and North Atlantic Current segments of the Gulf Stream exhibiting distinct upper and deep flows that are incoherent, while in the Mid-Atlantic Bight the Gulf Stream exhibits flows in three layers each of which tends to be incoherent with the other layers at most periods. These coherence characteristics are exhibited in both Eulerian and stream coordinates. The observed lack of vertical coherence indicates that great caution must be exercised in interpreting proxies for Gulf Stream structure and flow from vertically-limited or remote observations.

Structure, transport, and vertical coherence of the Gulf Stream from the Straits of Florida to the Southeast Newfoundland Ridge

NASA Astrophysics Data System (ADS)

Meinen, Christopher S.; Luther, Douglas S.

2016-05-01

Data from three independent and extensive field programs in the Straits of Florida, the Mid-Atlantic Bight, and near the Southeast Newfoundland Ridge are reanalyzed and compared with results from other historical studies to highlight the downstream evolution of several characteristics of the Gulf Stream's mean flow and variability. The three locations represent distinct dynamical regimes: a tightly confined jet in a channel; a freely meandering jet; and a topographically controlled jet on a boundary. Despite these differing dynamical regimes, the Gulf Stream in these areas exhibits many similarities. There are also anticipated and important differences, such as the loss of the warm core of the current by 42°N and the decrease in the cross-frontal gradient of potential vorticity as the current flows northward. As the Gulf Stream evolves it undergoes major changes in transport, both in magnitude and structure. The rate of inflow up to 60°W and outflow thereafter are generally uniform, but do exhibit some remarkable short-scale variations. As the Gulf Stream flows northward the vertical coherence of the flow changes, with the Florida Current and North Atlantic Current segments of the Gulf Stream exhibiting distinct upper and deep flows that are incoherent, while in the Mid-Atlantic Bight the Gulf Stream exhibits flows in three layers each of which tends to be incoherent with the other layers at most periods. These coherence characteristics are exhibited in both Eulerian and stream coordinates. The observed lack of vertical coherence indicates that great caution must be exercised in interpreting proxies for Gulf Stream structure and flow from vertically-limited or remote observations.

Instability of supersonic cold streams feeding galaxies - I. Linear Kelvin-Helmholtz instability with body modes

NASA Astrophysics Data System (ADS)

Mandelker, Nir; Padnos, Dan; Dekel, Avishai; Birnboim, Yuval; Burkert, Andreas; Krumholz, Mark R.; Steinberg, Elad

2016-12-01

Massive galaxies at high redshift are predicted to be fed from the cosmic web by narrow, dense streams of cold gas that penetrate through the hot medium encompassed by a stable shock near the virial radius of the dark-matter halo. Our long-term goal is to explore the heating and dissipation rate of the streams and their fragmentation and possible breakup, in order to understand how galaxies are fed, and how this affects their star formation rate and morphology. We present here the first step, where we analyse the linear Kelvin-Helmholtz instability (KHI) of a cold, dense slab or cylinder in 3D flowing supersonically through a hot, dilute medium. The current analysis is limited to the adiabatic case with no gravity. By analytically solving the linear dispersion relation, we find a transition from a dominance of the familiar rapidly growing surface modes in the subsonic regime to more slowly growing body modes in the supersonic regime. The system is parametrized by three parameters: the density contrast between stream and medium, the Mach number of stream velocity with respect to the medium and the stream width with respect to the halo virial radius. A realistic choice for these parameters places the streams near the mode transition, with the KHI exponential-growth time in the range 0.01-10 virial crossing times for a perturbation wavelength comparable to the stream width. We confirm our analytic predictions with idealized hydrodynamical simulations. Our linear estimates thus indicate that KHI may be effective in the evolution of streams before they reach the galaxy. More definite conclusions await the extension of the analysis to the non-linear regime and the inclusion of cooling, thermal conduction, the halo potential well, self-gravity and magnetic fields.

Tracer gauge: An automated dye dilution gauging system for ice‐affected streams

USGS Publications Warehouse

Clow, David W.; Fleming, Andrea C.

2008-01-01

In‐stream flow protection programs require accurate, real‐time streamflow data to aid in the protection of aquatic ecosystems during winter base flow periods. In cold regions, however, winter streamflow often can only be estimated because in‐channel ice causes variable backwater conditions and alters the stage‐discharge relation. In this study, an automated dye dilution gauging system, a tracer gauge, was developed for measuring discharge in ice‐affected streams. Rhodamine WT is injected into the stream at a constant rate, and downstream concentrations are measured with a submersible fluorometer. Data loggers control system operations, monitor key variables, and perform discharge calculations. Comparison of discharge from the tracer gauge and from a Cipoletti weir during periods of extensive ice cover indicated that the root‐mean‐square error of the tracer gauge was 0.029 m3 s−1, or 6.3% of average discharge for the study period. The tracer gauge system can provide much more accurate data than is currently available for streams that are strongly ice affected and, thus, could substantially improve management of in‐stream flow protection programs during winter in cold regions. Care must be taken, however, to test for the validity of key assumptions, including complete mixing and conservative behavior of dye, no changes in storage, and no gains or losses of water to or from the stream along the study reach. These assumptions may be tested by measuring flow‐weighted dye concentrations across the stream, performing dye mass balance analyses, and evaluating breakthrough curve behavior.

A catchment scale evaluation of multiple stressor effects in headwater streams.

PubMed

Rasmussen, Jes J; McKnight, Ursula S; Loinaz, Maria C; Thomsen, Nanna I; Olsson, Mikael E; Bjerg, Poul L; Binning, Philip J; Kronvang, Brian

2013-01-01

Mitigation activities to improve water quality and quantity in streams as well as stream management and restoration efforts are conducted in the European Union aiming to improve the chemical, physical and ecological status of streams. Headwater streams are often characterised by impairment of hydromorphological, chemical, and ecological conditions due to multiple anthropogenic impacts. However, they are generally disregarded as water bodies for mitigation activities in the European Water Framework Directive despite their importance for supporting a higher ecological quality in higher order streams. We studied 11 headwater streams in the Hove catchment in the Copenhagen region. All sites had substantial physical habitat and water quality impairments due to anthropogenic influence (intensive agriculture, urban settlements, contaminated sites and low base-flow due to water abstraction activities in the catchment). We aimed to identify the dominating anthropogenic stressors at the catchment scale causing ecological impairment of benthic macroinvertebrate communities and provide a rank-order of importance that could help in prioritising mitigation activities. We identified numerous chemical and hydromorphological impacts of which several were probably causing major ecological impairments, but we were unable to provide a robust rank-ordering of importance suggesting that targeted mitigation efforts on single anthropogenic stressors in the catchment are unlikely to have substantial effects on the ecological quality in these streams. The SPEcies At Risk (SPEAR) index explained most of the variability in the macroinvertebrate community structure, and notably, SPEAR index scores were often very low (<10% SPEAR abundance). An extensive re-sampling of a subset of the streams provided evidence that especially insecticides were probably essential contributors to the overall ecological impairment of these streams. Our results suggest that headwater streams should be considered in future management and mitigation plans. Catchment-based management is necessary because several anthropogenic stressors exceeded problematic thresholds, suggesting that more holistic approaches should be preferred. Copyright © 2012 Elsevier B.V. All rights reserved.

Hydraulic and Thermal Response to Intermittent Pumping in Unconfined Alluvial Aquifers along a Regulated Stream

NASA Astrophysics Data System (ADS)

Maharjan, Madan

Groundwater response to stream stage fluctuations was studied using a year-long time series of stream stage and well heads in Glen Dale and New Martinsville, WV. Stream stage fluctuations exerted primary control over groundwater levels, especially during high flows. The location and operation of river pools created by dams alter groundwater flow paths and velocities. Aquifers are more prone to surface water infiltration in the upper reaches of pools than in lower reaches. Aquifer diffusivity is heterogeneous within and between the two sites. Temperature fluctuations were observed for 2.5 years in 14 wells in three alluvial aquifers. Temperature signals have 2 components corresponding to pump-on and pump-off periods. Both components vary seasonality at different magnitudes. While pump-off temperatures fluctuated up to 3.8o C seasonally, short-term temperature shifts induced by turning the pump on were 0.2 to 2.5o C. Pumping-induced temperature shifts were highest in magnitude in summer and winter. Groundwater temperature lagged behind that of surface water by approximately six months. Pumping induced and seasonal temperature shifts were spatially and temporally complex but indicate stream exfiltration is a major driver for a number of these wells. Numerical simulation of aquifer response to pumping show different conditions before and after well-field development. During pre-development, the stream was losing at high flow and gaining at low flow. During post-development, however, the stream was losing at high flow and spatially variable at low flow. While bank storage gained only during high stage, stream exfiltration occurred year-round. Pumping induced stream exfiltration by creating an extensive cone of depression beneath the stream in both upstream and downstream directions. Spatially and temporally variable groundwater-surface water interaction next to a regulated stream were studied using analytical and numerical models, based on field observations. Seasonality plays an important role in these interactions, but human activity may also alter its intensity.

Effects of Large Wood on River-Floodplain Connectivity in a Headwater Appalachian Stream

NASA Astrophysics Data System (ADS)

Keys, T.; Govenor, H.; Jones, C. N.; Hession, W. C.; Scott, D.; Hester, E. T.

2017-12-01

Large wood (LW) plays an important, yet often undervalued role in stream ecosystems. Traditionally, LW has been removed from streams for aesthetic, navigational, and flood mitigation purposes. However, extensive research over the last three decades has directly linked LW to critical ecosystem functions including habitat provisioning, stream geomorphic stability, and water quality improvements; and as such, LW has increasingly been implemented in stream restoration activities. One of the proposed benefits to this restoration approach is that LW increases river-floodplain connectivity, potentially decreasing downstream flood peaks and improving water quality. Here, we conducted two experiential floods (i.e., one with and one without LW) in a headwater, agricultural stream to explore the effect of LW on river-floodplain connectivity and resulting hydrodynamic processes. During each flood, we released an equal amount of water to the stream channel, measured stream discharge at upstream and downstream boundaries, and measured inundation depth at multiple locations across the floodplain. We then utilized a 2-dimensional hydrodynamic model (HEC-RAS) to simulate floodplain hydrodynamics. We first calibrated the model using observations from the two experimental floods. Then, we utilized the calibrated model to evaluate differing LW placement strategies and effects under various flow conditions. Results show that the addition of LW to the channel decreased channel velocity and increased inundation extent, inundation depth, and floodplain velocity. Differential placement of LW along the stream impacted the levels of floodplain discharge, primarily due to the geomorphic characteristics of the stream. Finally, we examined the effects of LW on floodplain hydrodynamics across a synthetic flow record, and found that the magnitude of river-floodplain connectivity decreased as recurrence interval increased, with limited impacts on storm events with a recurrence interval of 25 years or greater. These findings suggest that LW plays a substantial role in river-floodplain connectivity of headwater streams and associated ecosystem services.

Spatial patterns of stream temperatures and electric conductivity in a mesoscale catchment

NASA Astrophysics Data System (ADS)

Lieder, Ernestine; Weiler, Markus; Blume, Theresa

2017-04-01

Stream temperature and electric conductivity (EC) are both relatively easily measured and can provide valuable information on runoff generation processes and catchment storage.This study investigates the spatial variability of stream temperature and EC in a mesoscale basin. We focus on the mesoscale (sub-catchments and reach scale), and long term (seasonal / annual) stream temperature and EC patterns. Our study basin is the Attert catchment in Luxembourg (288km2), which contains multiple sub-catchments of different geology, topography and land use patterns. We installed 90 stream temperature and EC sensors at sites across the basin in summer 2015. The collected data is complemented by land use and discharge data and an extensive climate data set. Thermal sensitivity was calculated as the slope of daily air temperature-water-temperature regression line and describes the sensitivity of stream temperature to long term environmental change. Amplitude sensitivity was calculated as slope of the daily air and water temperature amplitude regression and describes the short term warming capacity of the stream. We found that groups with similar long term thermal and EC patterns are strongly related to different geological units. The sandstone reaches show the coldest temperatures and lowest annual thermal sensitivity to air temperature. The slate reaches are characterized by comparably low EC and high daily temperature amplitudes and amplitude sensitivity. Furthermore, mean annual temperatures and thermal sensitivities increase exponentially with drainage area, which can be attributed to the accumulation of heat throughout the system. On the reach scale, daily stream temperature fluctuations or sensitivities were strongly influenced by land cover distribution, stream shading and runoff volume. Daily thermal sensitivities were low for headwater streams; peaked for intermediate reaches in the middle of the catchment and then decreased again further downstream with increasing drainage area. Combining spatially distributed time series of stream temperatures and EC with information about geology, landscape and climate provides insight into the underlying hydrological processes and allows for the identification of thermally sensitive regions and reaches.

Landuse legacies and small streams: Identifying relationships between historical land use and contemporary stream conditions

USGS Publications Warehouse

Maloney, K.O.; Feminella, J.W.; Mitchell, R.M.; Miller, S.A.; Mulholland, P.J.; Houser, J.N.

2008-01-01

The concept of landscape legacies has been examined extensively in terrestrial ecosystems and has led to a greater understanding of contemporary ecosystem processes. However, although stream ecosystems are tightly coupled with their catchments and, thus, probably are affected strongly by historical catchment conditions, few studies have directly examined the importance of landuse legacies on streams. We examined relationships between historical land use (1944) and contemporary (2000-2003) stream physical, chemical, and biological conditions after accounting for the influences of contemporary land use (1999) and natural landscape (catchment size) variation in 12 small streams at Fort Benning, Georgia, USA. Most stream variables showed strong relationships with contemporary land use and catchment size; however, after accounting for these factors, residual variation in many variables remained significantly related to historical land use. Residual variation in benthic particulate organic matter, diatom density, % of diatoms in Eunotia spp., fish density in runs, and whole-stream gross primary productivity correlated negatively, whereas streamwater pH correlated positively, with residual variation in fraction of disturbed land in catchments in 1944 (i.e., bare ground and unpaved road cover). Residual variation in % recovering land (i.e., early successional vegetation) in 1944 was correlated positively with residual variation in streambed instability, a macroinvertebrate biotic index, and fish richness, but correlated negatively with residual variation in most benthic macroinvertebrate metrics examined (e.g., Chironomidae and total richness, Shannon diversity). In contrast, residual variation in whole-stream respiration rates was not explained by historical land use. Our results suggest that historical land use continues to influence important physical and chemical variables in these streams, and in turn, probably influences associated biota. Beyond providing insight into biotic interactions and their associations with environmental conditions, identification of landuse legacies also will improve understanding of stream impairment in contemporary minimally disturbed catchments, enabling more accurate assessment of reference conditions in studies of biotic integrity and restoration. ?? 2008 by The North American Benthological Society.

Rethinking hyporheic flow and transient storage to advance understanding of stream-catchment connections

USGS Publications Warehouse

Bencala, K.E.; Gooseff, M.N.; Kimball, B.A.

2011-01-01

Although surface water and groundwater are increasingly referred to as one resource, there remain environmental and ecosystem needs to study the 10 m to 1 km reach scale as one hydrologic system. Streams gain and lose water over a range of spatial and temporal scales. Large spatial scales (kilometers) have traditionally been recognized and studied as river-aquifer connections. Over the last 25 years hyporheic exchange flows (1-10 m) have been studied extensively. Often a transient storage model has been used to quantify the physical solute transport setting in which biogeochemical processes occur. At the longer 10 m to 1 km scale of stream reaches it is now clear that streams which gain water overall can coincidentally lose water to the subsurface. At this scale, the amounts of water transferred are not necessarily significant but the exchanges can, however, influence solute transport. The interpretation of seemingly straightforward questions about water, contaminant, and nutrient fluxes into and along a stream can be confounded by flow losses which are too small to be apparent in stream gauging and along flow paths too long to be detected in tracer experiments. We suggest basic hydrologic approaches, e.g., measurement of flow along the channel, surface and subsurface solute sampling, and routine measurements of the water table that, in our opinion, can be used to extend simple exchange concepts from the hyporheic exchange scale to a scale of stream-catchment connection. Copyright 2011 by the American Geophysical Union.

Stream vulnerability to widespread and emergent stressors: a focus on unconventional oil and gas

USGS Publications Warehouse

Entrekin, Sally; Maloney, Kelly O.; Katherine E. Kapo,; Walters, Annika W.; Evans-White, Michelle A.; Klemow, Kenneth M.

2015-01-01

Multiple stressors threaten stream physical and biological quality, including elevated nutrients and other contaminants, riparian and in-stream habitat degradation and altered natural flow regime. Unconventional oil and gas (UOG) development is one emerging stressor that spans the U.S. UOG development could alter stream sedimentation, riparian extent and composition, in-stream flow, and water quality. We developed indices to describe the watershed sensitivity and exposure to natural and anthropogenic disturbances and computed a vulnerability index from these two scores across stream catchments in six productive shale plays. We predicted that catchment vulnerability scores would vary across plays due to climatic, geologic and anthropogenic differences. Across-shale averages supported this prediction revealing differences in catchment sensitivity, exposure, and vulnerability scores that resulted from different natural and anthropogenic environmental conditions. For example, semi-arid Western shale play catchments (Mowry, Hilliard, and Bakken) tended to be more sensitive to stressors due to low annual average precipitation and extensive grassland. Catchments in the Barnett and Marcellus-Utica were naturally sensitive from more erosive soils and steeper catchment slopes, but these catchments also experienced areas with greater UOG densities and urbanization. Our analysis suggested Fayetteville and Barnett catchments were vulnerable due to existing anthropogenic exposure. However, all shale plays had catchments that spanned a wide vulnerability gradient. Our results identify vulnerable catchments that can help prioritize stream protection and monitoring efforts. Resource managers can also use these findings to guide local development activities to help reduce possible environmental effects.

Guidelines for the collection of continuous stream water-temperature data in Alaska

USGS Publications Warehouse

Toohey, Ryan C.; Neal, Edward G.; Solin, Gary L.

2014-01-01

Objectives of stream monitoring programs differ considerably among many of the academic, Federal, state, tribal, and non-profit organizations in the state of Alaska. Broad inclusion of stream-temperature monitoring can provide an opportunity for collaboration in the development of a statewide stream-temperature database. Statewide and regional coordination could reduce overall monitoring cost, while providing better analyses at multiple spatial and temporal scales to improve resource decision-making. Increased adoption of standardized protocols and data-quality standards may allow for validation of historical modeling efforts with better projection calibration. For records of stream water temperature to be generally consistent, unbiased, and reproducible, data must be collected and analyzed according to documented protocols. Collection of water-temperature data requires definition of data-quality objectives, good site selection, proper selection of instrumentation, proper installation of sensors, periodic site visits to maintain sensors and download data, pre- and post-deployment verification against an NIST-certified thermometer, potential data corrections, and proper documentation, review, and approval. A study created to develop a quality-assurance project plan, data-quality objectives, and a database management plan that includes procedures for data archiving and dissemination could provide a means to standardize a statewide stream-temperature database in Alaska. Protocols can be modified depending on desired accuracy or specific needs of data collected. This document is intended to guide users in collecting time series water-temperature data in Alaskan streams and draws extensively on the broader protocols already published by the U.S. Geological Survey.

Stream Vulnerability to Widespread and Emergent Stressors: A Focus on Unconventional Oil and Gas

PubMed Central

Entrekin, Sally A.; Maloney, Kelly O.; Kapo, Katherine E.; Walters, Annika W.; Evans-White, Michelle A.; Klemow, Kenneth M.

2015-01-01

Multiple stressors threaten stream physical and biological quality, including elevated nutrients and other contaminants, riparian and in-stream habitat degradation and altered natural flow regime. Unconventional oil and gas (UOG) development is one emerging stressor that spans the U.S. UOG development could alter stream sedimentation, riparian extent and composition, in-stream flow, and water quality. We developed indices to describe the watershed sensitivity and exposure to natural and anthropogenic disturbances and computed a vulnerability index from these two scores across stream catchments in six productive shale plays. We predicted that catchment vulnerability scores would vary across plays due to climatic, geologic and anthropogenic differences. Across-shale averages supported this prediction revealing differences in catchment sensitivity, exposure, and vulnerability scores that resulted from different natural and anthropogenic environmental conditions. For example, semi-arid Western shale play catchments (Mowry, Hilliard, and Bakken) tended to be more sensitive to stressors due to low annual average precipitation and extensive grassland. Catchments in the Barnett and Marcellus-Utica were naturally sensitive from more erosive soils and steeper catchment slopes, but these catchments also experienced areas with greater UOG densities and urbanization. Our analysis suggested Fayetteville and Barnett catchments were vulnerable due to existing anthropogenic exposure. However, all shale plays had catchments that spanned a wide vulnerability gradient. Our results identify vulnerable catchments that can help prioritize stream protection and monitoring efforts. Resource managers can also use these findings to guide local development activities to help reduce possible environmental effects. PMID:26397727

Potential interaction between transport and stream networks over the lowland rivers in Eastern India.

PubMed

Roy, Suvendu; Sahu, Abhay Sankar

2017-07-15

Extension of transport networks supports good accessibility and associated with the development of a region. However, transport lines have fragmented the regional landscape and disturbed the natural interplay between rivers and their floodplains. Spatial analysis using multiple buffers provides information about the potential interaction between road and stream networks and their impact on channel morphology of a small watershed in the Lower Gangetic Plain. Present study is tried to understand the lateral and longitudinal disconnection in headwater stream by rural roads with the integration of geoinformatics and field survey. Significant (p < 0.001) growth of total road length and number of road-stream crossing in the last five decades (1970s-2010s) contribute to making longitudinal and lateral disconnection in the fluvial system of Kunur River Basin. Channel geometry from ten road-stream crossings shows significant (p = 0.01) differences between upstream and downstream of crossing structure and created problems like downstream scouring, increased drop height at outlet, formation of stable bars, severe bank erosion, and make barriers for river biota. The hydro-geomorphic processes are also adversely affected due to lateral disconnection and input of fine to coarse sediments from the river side growth of unpaved road (1922%). Limited streamside development, delineation of stream corridor, regular monitoring and engineering efficiency for the construction of road and road-stream crossing might be effective in managing river geomorphology and riverine landscape. Copyright © 2017 Elsevier Ltd. All rights reserved.

Parallel algorithms for boundary value problems

NASA Technical Reports Server (NTRS)

Lin, Avi

1990-01-01

A general approach to solve boundary value problems numerically in a parallel environment is discussed. The basic algorithm consists of two steps: the local step where all the P available processors work in parallel, and the global step where one processor solves a tridiagonal linear system of the order P. The main advantages of this approach are two fold. First, this suggested approach is very flexible, especially in the local step and thus the algorithm can be used with any number of processors and with any of the SIMD or MIMD machines. Secondly, the communication complexity is very small and thus can be used as easily with shared memory machines. Several examples for using this strategy are discussed.

A sparse matrix algorithm on the Boolean vector machine

NASA Technical Reports Server (NTRS)

Wagner, Robert A.; Patrick, Merrell L.

1988-01-01

VLSI technology is being used to implement a prototype Boolean Vector Machine (BVM), which is a large network of very small processors with equally small memories that operate in SIMD mode; these use bit-serial arithmetic, and communicate via cube-connected cycles network. The BVM's bit-serial arithmetic and the small memories of individual processors are noted to compromise the system's effectiveness in large numerical problem applications. Attention is presently given to the implementation of a basic matrix-vector iteration algorithm for space matrices of the BVM, in order to generate over 1 billion useful floating-point operations/sec for this iteration algorithm. The algorithm is expressed in a novel language designated 'BVM'.

An update on the BQCD Hybrid Monte Carlo program

NASA Astrophysics Data System (ADS)

Haar, Taylor Ryan; Nakamura, Yoshifumi; Stüben, Hinnerk

2018-03-01

We present an update of BQCD, our Hybrid Monte Carlo program for simulating lattice QCD. BQCD is one of the main production codes of the QCDSF collaboration and is used by CSSM and in some Japanese finite temperature and finite density projects. Since the first publication of the code at Lattice 2010 the program has been extended in various ways. New features of the code include: dynamical QED, action modification in order to compute matrix elements by using Feynman-Hellman theory, more trace measurements (like Tr(D-n) for K, cSW and chemical potential reweighting), a more flexible integration scheme, polynomial filtering, term-splitting for RHMC, and a portable implementation of performance critical parts employing SIMD.

GROMACS: High performance molecular simulations through multi-level parallelism from laptops to supercomputers

DOE PAGES

Abraham, Mark James; Murtola, Teemu; Schulz, Roland; ...

2015-07-15

GROMACS is one of the most widely used open-source and free software codes in chemistry, used primarily for dynamical simulations of biomolecules. It provides a rich set of calculation types, preparation and analysis tools. Several advanced techniques for free-energy calculations are supported. In version 5, it reaches new performance heights, through several new and enhanced parallelization algorithms. This work on every level; SIMD registers inside cores, multithreading, heterogeneous CPU–GPU acceleration, state-of-the-art 3D domain decomposition, and ensemble-level parallelization through built-in replica exchange and the separate Copernicus framework. Finally, the latest best-in-class compressed trajectory storage format is supported.

GROMACS: High performance molecular simulations through multi-level parallelism from laptops to supercomputers

DOE Office of Scientific and Technical Information (OSTI.GOV)

Abraham, Mark James; Murtola, Teemu; Schulz, Roland

GROMACS is one of the most widely used open-source and free software codes in chemistry, used primarily for dynamical simulations of biomolecules. It provides a rich set of calculation types, preparation and analysis tools. Several advanced techniques for free-energy calculations are supported. In version 5, it reaches new performance heights, through several new and enhanced parallelization algorithms. This work on every level; SIMD registers inside cores, multithreading, heterogeneous CPU–GPU acceleration, state-of-the-art 3D domain decomposition, and ensemble-level parallelization through built-in replica exchange and the separate Copernicus framework. Finally, the latest best-in-class compressed trajectory storage format is supported.

Performance of GeantV EM Physics Models

NASA Astrophysics Data System (ADS)

Amadio, G.; Ananya, A.; Apostolakis, J.; Aurora, A.; Bandieramonte, M.; Bhattacharyya, A.; Bianchini, C.; Brun, R.; Canal, P.; Carminati, F.; Cosmo, G.; Duhem, L.; Elvira, D.; Folger, G.; Gheata, A.; Gheata, M.; Goulas, I.; Iope, R.; Jun, S. Y.; Lima, G.; Mohanty, A.; Nikitina, T.; Novak, M.; Pokorski, W.; Ribon, A.; Seghal, R.; Shadura, O.; Vallecorsa, S.; Wenzel, S.; Zhang, Y.

2017-10-01

The recent progress in parallel hardware architectures with deeper vector pipelines or many-cores technologies brings opportunities for HEP experiments to take advantage of SIMD and SIMT computing models. Launched in 2013, the GeantV project studies performance gains in propagating multiple particles in parallel, improving instruction throughput and data locality in HEP event simulation on modern parallel hardware architecture. Due to the complexity of geometry description and physics algorithms of a typical HEP application, performance analysis is indispensable in identifying factors limiting parallel execution. In this report, we will present design considerations and preliminary computing performance of GeantV physics models on coprocessors (Intel Xeon Phi and NVidia GPUs) as well as on mainstream CPUs.

Electromagnetic Physics Models for Parallel Computing Architectures

NASA Astrophysics Data System (ADS)

Amadio, G.; Ananya, A.; Apostolakis, J.; Aurora, A.; Bandieramonte, M.; Bhattacharyya, A.; Bianchini, C.; Brun, R.; Canal, P.; Carminati, F.; Duhem, L.; Elvira, D.; Gheata, A.; Gheata, M.; Goulas, I.; Iope, R.; Jun, S. Y.; Lima, G.; Mohanty, A.; Nikitina, T.; Novak, M.; Pokorski, W.; Ribon, A.; Seghal, R.; Shadura, O.; Vallecorsa, S.; Wenzel, S.; Zhang, Y.

2016-10-01

The recent emergence of hardware architectures characterized by many-core or accelerated processors has opened new opportunities for concurrent programming models taking advantage of both SIMD and SIMT architectures. GeantV, a next generation detector simulation, has been designed to exploit both the vector capability of mainstream CPUs and multi-threading capabilities of coprocessors including NVidia GPUs and Intel Xeon Phi. The characteristics of these architectures are very different in terms of the vectorization depth and type of parallelization needed to achieve optimal performance. In this paper we describe implementation of electromagnetic physics models developed for parallel computing architectures as a part of the GeantV project. Results of preliminary performance evaluation and physics validation are presented as well.

Design and Performance of a 1 ms High-Speed Vision Chip with 3D-Stacked 140 GOPS Column-Parallel PEs †.

PubMed

Nose, Atsushi; Yamazaki, Tomohiro; Katayama, Hironobu; Uehara, Shuji; Kobayashi, Masatsugu; Shida, Sayaka; Odahara, Masaki; Takamiya, Kenichi; Matsumoto, Shizunori; Miyashita, Leo; Watanabe, Yoshihiro; Izawa, Takashi; Muramatsu, Yoshinori; Nitta, Yoshikazu; Ishikawa, Masatoshi

2018-04-24

We have developed a high-speed vision chip using 3D stacking technology to address the increasing demand for high-speed vision chips in diverse applications. The chip comprises a 1/3.2-inch, 1.27 Mpixel, 500 fps (0.31 Mpixel, 1000 fps, 2 × 2 binning) vision chip with 3D-stacked column-parallel Analog-to-Digital Converters (ADCs) and 140 Giga Operation per Second (GOPS) programmable Single Instruction Multiple Data (SIMD) column-parallel PEs for new sensing applications. The 3D-stacked structure and column parallel processing architecture achieve high sensitivity, high resolution, and high-accuracy object positioning.

Performance evaluation of throughput computing workloads using multi-core processors and graphics processors

NASA Astrophysics Data System (ADS)

Dave, Gaurav P.; Sureshkumar, N.; Blessy Trencia Lincy, S. S.

2017-11-01

Current trend in processor manufacturing focuses on multi-core architectures rather than increasing the clock speed for performance improvement. Graphic processors have become as commodity hardware for providing fast co-processing in computer systems. Developments in IoT, social networking web applications, big data created huge demand for data processing activities and such kind of throughput intensive applications inherently contains data level parallelism which is more suited for SIMD architecture based GPU. This paper reviews the architectural aspects of multi/many core processors and graphics processors. Different case studies are taken to compare performance of throughput computing applications using shared memory programming in OpenMP and CUDA API based programming.

Climate change mitigation for agriculture: water quality benefits and costs.

PubMed

Wilcock, Robert; Elliott, Sandy; Hudson, Neale; Parkyn, Stephanie; Quinn, John

2008-01-01

New Zealand is unique in that half of its national greenhouse gas (GHG) inventory derives from agriculture--predominantly as methane (CH4) and nitrous oxide (N2O), in a 2:1 ratio. The remaining GHG emissions predominantly comprise carbon dioxide (CO2) deriving from energy and industry sources. Proposed strategies to mitigate emissions of CH4 and N2O from pastoral agriculture in New Zealand are: (1) utilising extensive and riparian afforestation of pasture to achieve CO2 uptake (carbon sequestration); (2) management of nitrogen through budgeting and/or the use of nitrification inhibitors, and minimizing soil anoxia to reduce N2O emissions; and (3) utilisation of alternative waste treatment technologies to minimise emissions of CH4. These mitigation measures have associated co-benefits and co-costs (disadvantages) for rivers, streams and lakes because they affect land use, runoff loads, and receiving water and habitat quality. Extensive afforestation results in lower specific yields (exports) of nitrogen (N), phosphorus (P), suspended sediment (SS) and faecal matter and also has benefits for stream habitat quality by improving stream temperature, dissolved oxygen and pH regimes through greater shading, and the supply of woody debris and terrestrial food resources. Riparian afforestation does not achieve the same reductions in exports as extensive afforestation but can achieve reductions in concentrations of N, P, SS and faecal organisms. Extensive afforestation of pasture leads to reduced water yields and stream flows. Both afforestation measures produce intermittent disturbances to waterways during forestry operations (logging and thinning), resulting in sediment release from channel re-stabilisation and localised flooding, including formation of debris dams at culverts. Soil and fertiliser management benefits aquatic ecosystems by reducing N exports but the use of nitrification inhibitors, viz. dicyandiamide (DCD), to achieve this may under some circumstances impair wetland function to intercept and remove nitrate from drainage water, or even add to the overall N loading to waterways. DCD is water soluble and degrades rapidly in warm soil conditions. The recommended application rate of 10 kg DCD/ha corresponds to 6 kg N/ha and may be exceeded in warm climates. Of the N2O produced by agricultural systems, approximately 30% is emitted from indirect sources, which are waterways draining agriculture. It is important therefore to focus strategies for managing N inputs to agricultural systems generally to reduce inputs to wetlands and streams where these might be reduced to N2O. Waste management options include utilizing the CH4 resource produced in farm waste treatment ponds as a source of energy, with conversion to CO2 via combustion achieving a 21-fold reduction in GHG emissions. Both of these have co-benefits for waterways as a result of reduced loadings. A conceptual model derived showing the linkages between key land management practices for greenhouse gas mitigation and key waterway values and ecosystem attributes is derived to aid resource managers making decisions affecting waterways and atmospheric GHG emissions. Copyright (c) IWA Publishing 2008.

Evaluating hillslope and riparian contributions to dissolved nitrogen (N) export from a boreal forest catchment

NASA Astrophysics Data System (ADS)

Blackburn, M.; Ledesma, José L. J.; Näsholm, Torgny; Laudon, Hjalmar; Sponseller, Ryan A.

2017-02-01

Catchment science has long held that the chemistry of small streams reflects the landscapes they drain. However, understanding the contribution of different landscape units to stream chemistry remains a challenge which frequently limits our understanding of export dynamics. For limiting nutrients such as nitrogen (N), an implicit assumption is that the most spatially extensive landscape units (e.g., uplands) act as the primary sources to surface waters, while near-stream zones function more often as sinks. These assumptions, based largely on studies in high-gradient systems or in regions with elevated inputs of anthropogenic N, may not apply to low-gradient, nutrient-poor, and peat-rich catchments characteristic of many northern ecosystems. We quantified patterns of N mobilization along a hillslope transect in a northern boreal catchment to assess the extent to which organic matter-rich riparian soils regulate the flux of N to streams. Contrary to the prevailing view of riparian functioning, we found that near-stream, organic soils supported concentrations and fluxes of ammonium (NH4+) and dissolved organic nitrogen that were much higher than the contributing upslope forest soils. These results suggest that stream N chemistry is connected to N mobilization and mineralization within the riparian zone rather than the wider landscape. Results further suggest that water table fluctuation in near-surface riparian soils may promote elevated rates of net N mineralization in these landscapes.

An investigation of total bacterial communities, culturable antibiotic-resistant bacterial communities and integrons in the river water environments of Taipei city.

PubMed

Yang, Chu-Wen; Chang, Yi-Tang; Chao, Wei-Liang; Shiung, Iau-Iun; Lin, Han-Sheng; Chen, Hsuan; Ho, Szu-Han; Lu, Min-Jheng; Lee, Pin-Hsuan; Fan, Shao-Ning

2014-07-30

The intensive use of antibiotics may accelerate the development of antibiotic-resistant bacteria (ARB). The global geographical distribution of environmental ARB has been indicated by many studies. However, the ARB in the water environments of Taiwan has not been extensively investigated. The objective of this study was to investigate the communities of ARB in Huanghsi Stream, which presents a natural acidic (pH 4) water environment. Waishuanghsi Stream provides a neutral (pH 7) water environment and was thus also monitored to allow comparison. The plate counts of culturable bacteria in eight antibiotics indicate that the numbers of culturable carbenicillin- and vancomycin-resistant bacteria in both Huanghsi and Waishuanghsi Streams are greater than the numbers of culturable bacteria resistant to the other antibiotics tested. Using a 16S rDNA sequencing approach, both the antibiotic-resistant bacterial communities (culture-based) and the total bacterial communities (metagenome-based) in Waishuanghsi Stream exhibit a higher diversity than those in Huanghsi Stream were observed. Of the three classes of integron, only class I integrons were identified in Waishuanghsi Stream. Our results suggest that an acidic (pH 4) water environment may not only affect the community composition of antibiotic-resistant bacteria but also the horizontal gene transfer mediated by integrons. Copyright © 2013 Elsevier B.V. All rights reserved.

Indicators of streamflow alteration, habitat fragmentation, impervious cover, and water quality for Massachusetts stream basins

USGS Publications Warehouse

Weiskel, Peter K.; Brandt, Sara L.; DeSimone, Leslie A.; Ostiguy, Lance J.; Archfield, Stacey A.

2010-01-01

Massachusetts streams and stream basins have been subjected to a wide variety of human alterations since colonial times. These alterations include water withdrawals, treated wastewater discharges, construction of onsite septic systems and dams, forest clearing, and urbanization—all of which have the potential to affect streamflow regimes, water quality, and habitat integrity for fish and other aquatic biota. Indicators were developed to characterize these types of potential alteration for subbasins and groundwater contributing areas in Massachusetts. The potential alteration of streamflow by the combined effects of withdrawals and discharges was assessed under two water-use scenarios. Water-use scenario 1 incorporated publicly reported groundwater withdrawals and discharges, direct withdrawals from and discharges to streams, and estimated domestic-well withdrawals and septic-system discharges. Surface-water-reservoir withdrawals were excluded from this scenario. Water-use scenario 2 incorporated all the types of withdrawal and discharge included in scenario 1 as well as withdrawals from surface-water reservoirs—all on a long-term, mean annual basis. All withdrawal and discharge data were previously reported to the State for the 2000–2004 period, except domestic-well withdrawals and septic-system discharges, which were estimated for this study. The majority of the state’s subbasins and groundwater contributing areas were estimated to have relatively minor (less than 10 percent) alteration of streamflow under water-use scenario 1 (seasonally varying water use; no surface-water-reservoir withdrawals). However, about 12 percent of subbasins and groundwater contributing areas were estimated to have extensive alteration of streamflows (greater than 40 percent) in August; most of these basins were concentrated in the outer metropolitan Boston region. Potential surcharging of streamflow in August was most commonly indicated for main-stem river subbasins, although surcharging was also indicated for some smaller tributary subbasins. In the high-flow month of April, only 4.8 percent of subbasins and groundwater contributing areas had more than 10 percent potential flow alteration. A majority of the state’s subbasins and groundwater contributing areas were also indicated to have relatively minor alteration of streamflow under water-use scenario 2 (long-term average water use, including surface-water-reservoir withdrawals). Extensive alteration of mean annual flows was estimated for about 6 percent of the state’s subbasins and groundwater contributing areas. The majority of subbasins estimated to have extensive long-term flow alteration contained reservoirs that were specifically designed, constructed, and managed to supply drinking water to cities. Only a small number of subbasins and groundwater contributing areas (1 percent) were extensively surcharged on a long-term, mean annual basis. Because site-specific data concerning surface-water-reservoir storage dynamics and management practices are not available statewide, the seasonal effects of surface-water-reservoir withdrawals on downstream flows could not be assessed in this study. The impounded storage ratio (volume of impounded subbasin or groundwater-contributing-area storage divided by mean annual predevelopment outflow from the subbasin or contributing area, in units of days) indicates the potential for alteration of streamflow, sediment-transport, and temperature regimes by dams, independent of water use. Storage ratios were less than 1 day for 33 percent of the subbasins and groundwater contributing areas, greater than 1 month for about 40 percent of the cases, and greater than 1 year for 3.2 percent of the cases statewide. Dam density, an indicator of stream-habitat fragmentation by dams, averaged 1 dam for every 6.7 stream miles statewide. Many of these dams are not presently (2009) being managed. The highest dam densities were in portions of Worcester County and in the Plymouth-Carver region, respectively, reflecting the historical reliance of Massachusetts industry upon water power and agricultural water-management practices in southeastern Massachusetts. Impervious cover is a frequently used indicator of urban land use. About 33 percent of the state’s 1,429 subbasins and groundwater contributing areas are relatively undeveloped at the local scale, with a local impervious cover of less than 4 percent. About 18 percent of Massachusetts subbasins and contributing areas are highly developed, with a local impervious cover greater than 16 percent. The remaining 49 percent of subbasins and contributing areas have levels of urban development between these extremes (4 to 16 percent local impervious cover). Cumulative impervious cover, defined for the entire upstream area encompassed by each subbasin, shows a smaller range (0 to 55 percent) than local impervious cover. Both local and cumulative impervious cover were highest in metropolitan Boston and other urban centers. High elevated impervious-cover values were also found along major transportation corridors. The water-quality status of Massachusetts streams is assessed periodically by the Massachusetts Department of Environmental Protection pursuant to the requirements of the Federal Clean Water Act. Streams selected for assessment are commonly located in larger subbasins where some degree of impairment is expected. In the 72 percent of the state’s subbasins and groundwater contributing areas with assessed streams in 2002, more than 50 percent of the assessed stream miles were considered impaired. All of the assessed stream miles were considered impaired in 66 percent of the subbasins and groundwater contributing areas with assessed streams. Large streams, such as the main stems of rivers that make up most of the assessed stream miles, also are in many cases the receiving waters for treated wastewater discharges and for this reason may be more susceptible to water-quality impairments than smaller streams. Subbasins and contributing areas with large fractions of assessed stream miles that are listed as impaired are distributed across the state, but are more prevalent in eastern Massachusetts.

Relationship between precipitation and tree mortality levels in coastal California forests infested with sudden oak death

Treesearch

Brent Oblinger; Zachary Heath; Jeffrey Moore; Lisa Fischer

2013-01-01

Phytophthora ramorum has caused extensive oak (Quercus) and tanoak (Notholithocarpus densiflorus (Hook. & Arn.) Manos, Cannon & S.H. Oh) mortality in portions of the central and north coasts of California. In conjunction with stream and terrestrial surveys, aerial detection surveys have played a...

DEVELOPMENT OF LARGE RIVER BIOASSESSMENT PROTOCOLS (LR-BP) FOR BENTHIC MACROINVERTEBRATES IN EPA REGION 5

EPA Science Inventory

Since passage of the Clean Water Act, government agencies have made extensive use of biomonitoring protocols to report on the quality of wadeable streams and rivers. Non-wadeable systems have been largely overlooked because of

sampling difficulties and a lack of appropriat...

Enhancing Online Education Using Collaboration Solutions

ERIC Educational Resources Information Center

Ge, Shuzhi Sam; Tok, Meng Yong

2003-01-01

With the advances in Internet technologies, online education is fast gaining ground as an extension to traditional education. Webcast allows lectures conducted on campus to be viewed by students located at remote sites by streaming the audio and video content over Internet Protocol (IP) networks. However when used alone, webcast does not provide…

Next-Gen Video

ERIC Educational Resources Information Center

Arnn, Barbara

2007-01-01

This article discusses how schools across the US are using the latest videoconference and audio/video streaming technologies creatively to move to the next level of their very specific needs. At the Georgia Institute of Technology in Atlanta, the technology that is the backbone of the school's extensive distance learning program has to be…

Rethinking the longitudinal stream temperature paradigm: region-wide comparison of thermal infrared imagery reveals unexpected complexity of river temperatures

EPA Science Inventory

We used an extensive dataset of remotely sensed summertime river temperature to compare longitudinal profiles (temperature versus distance) for 54 rivers in the Pacific Northwest. We evaluated (1) how often profiles fit theoretical expectations of asymptotic downstream warming, a...

XML in an Adaptive Framework for Instrument Control

NASA Technical Reports Server (NTRS)

Ames, Troy J.

2004-01-01

NASA Goddard Space Flight Center is developing an extensible framework for instrument command and control, known as Instrument Remote Control (IRC), that combines the platform independent processing capabilities of Java with the power of the Extensible Markup Language (XML). A key aspect of the architecture is software that is driven by an instrument description, written using the Instrument Markup Language (IML). IML is an XML dialect used to describe interfaces to control and monitor the instrument, command sets and command formats, data streams, communication mechanisms, and data processing algorithms.

Loci-STREAM Version 0.9

NASA Technical Reports Server (NTRS)

Wright, Jeffrey; Thakur, Siddharth

2006-01-01

Loci-STREAM is an evolving computational fluid dynamics (CFD) software tool for simulating possibly chemically reacting, possibly unsteady flows in diverse settings, including rocket engines, turbomachines, oil refineries, etc. Loci-STREAM implements a pressure- based flow-solving algorithm that utilizes unstructured grids. (The benefit of low memory usage by pressure-based algorithms is well recognized by experts in the field.) The algorithm is robust for flows at all speeds from zero to hypersonic. The flexibility of arbitrary polyhedral grids enables accurate, efficient simulation of flows in complex geometries, including those of plume-impingement problems. The present version - Loci-STREAM version 0.9 - includes an interface with the Portable, Extensible Toolkit for Scientific Computation (PETSc) library for access to enhanced linear-equation-solving programs therein that accelerate convergence toward a solution. The name "Loci" reflects the creation of this software within the Loci computational framework, which was developed at Mississippi State University for the primary purpose of simplifying the writing of complex multidisciplinary application programs to run in distributed-memory computing environments including clusters of personal computers. Loci has been designed to relieve application programmers of the details of programming for distributed-memory computers.

Volatilization of organic compounds from streams

USGS Publications Warehouse

Rathburn, R.E.; Tai, D.Y.

1982-01-01

Mass-transfer coefficients for the volatilization of ethylene and propane were correlated with the hydraulic and geometric properties of seven streams, and predictive equations were developed. The equations were evaluated using a normalized root-mean-square error as the criterion of comparison. The two best equations were a two-variable equation containing the energy dissipated per unit mass per unit time and the average depth of flow and a three-variable equation containing the average velocity, the average depth of flow, and the slope of the stream. Procedures for adjusting the ethylene and propane coefficients for other organic compounds were evaluated. These procedures are based on molecular diffusivity, molecular diameter, or molecular weight. Because of limited data, none of these procedures have been extensively verified. Therefore, until additional data become available, it is suggested that the mass-transfer coefficient be assumed to be inversely proportional to the square root of the molecular weight.

Preliminary geologic map of the Deadman Spring NE quadrangle, Lincoln County, Nevada

USGS Publications Warehouse

Swadley, W.C.; Page, William R.; Scott, Robert B.

1994-01-01

Pesticides are used extensively in the largely agricultural Red River of the North (Red River) Basin, but, unlike many other agricultural basins, only small amounts are routinely detected in samples from streams in the basin. The pesticides detected comprise less than 2 percent of the amount applied and usually are at concentrations far less than established drinking water standards. Most of the detected pesticides seem to come from sources near the headwaters in the southern part of the basin. Although low, concentrations are related to pesticide application and runoff. Flat slope, organic solids, pesticide management, and degra- dation all may reduce pesticide contamination of Red River streams.

Relationships between indicators of acid-base chemistry and fish assemblages in streams of the Great Smoky Mountains National Park

USGS Publications Warehouse

Baldigo, Barry P.; Kulp, Matt A.; Schwartz, John S.

2018-01-01

The acidity of many streams in the Great Smoky Mountains National Park (GRSM) has increased significantly since pre-industrial (∼1850) times due to the effects of highly acidic atmospheric deposition in poorly buffered watersheds. Extensive stream-monitoring programs since 1993 have shown that fish and macroinvertebrate assemblages have been adversely affected in many streams across the GRSM. Matching chemistry and fishery information collected from 389 surveys performed at 52 stream sites over a 22-year period were assessed using logistic regression analysis to help inform the U.S. Environmental Protection Agency’s assessment of the environmental impacts of emissions of oxides of nitrogen (NOx) and sulfur (SOx). Numerous logistic equations and associated curves were derived that defined the relations between acid neutralizing capacity (ANC) or pH and different levels of community richness, density, and biomass; and density and biomass of brook trout, rainbow trout, and small prey (minnow) populations in streams of the GRSM. The equations and curves describe the status of fish assemblages in the GRSM under contemporary emission levels and deposition loads of nitrogen (N) and sulfur (S) and provide a means to estimate how newly proposed (and various alternative) target deposition loads, which strongly influence stream ANC, might affect key ecological indicators. Several examples using ANC, community richness, and brook trout density are presented to illustrate the steps needed to predict how future changes in stream chemistry (resulting from different target deposition loads of N and S) will affect the probabilities of observing specific levels of selected biological indicators in GRSM streams. The implications of this study to the regulation of NOx and SOx emissions, water quality, and fisheries management in streams of the GRSM are discussed, but also qualified by the fact that specific examples provided need to be further explored before recommendations concerning their use as ecological indicators could be proposed.

Hydrologic connectivity and the contribution of stream headwaters to ecological integrity at regional scales

USGS Publications Warehouse

Freeman, Mary C.; Pringle, C.M.; Jackson, C.R.

2007-01-01

Cumulatively, headwater streams contribute to maintaining hydrologic connectivity and ecosystem integrity at regional scales. Hydrologic connectivity is the water-mediated transport of matter, energy and organisms within or between elements of the hydrologic cycle. Headwater streams compose over two-thirds of total stream length in a typical river drainage and directly connect the upland and riparian landscape to the rest of the stream ecosystem. Altering headwater streams, e.g., by channelization, diversion through pipes, impoundment and burial, modifies fluxes between uplands and downstream river segments and eliminates distinctive habitats. The large-scale ecological effects of altering headwaters are amplified by land uses that alter runoff and nutrient loads to streams, and by widespread dam construction on larger rivers (which frequently leaves free-flowing upstream portions of river systems essential to sustaining aquatic biodiversity). We discuss three examples of large-scale consequences of cumulative headwater alteration. Downstream eutrophication and coastal hypoxia result, in part, from agricultural practices that alter headwaters and wetlands while increasing nutrient runoff. Extensive headwater alteration is also expected to lower secondary productivity of river systems by reducing stream-system length and trophic subsidies to downstream river segments, affecting aquatic communities and terrestrial wildlife that utilize aquatic resources. Reduced viability of freshwater biota may occur with cumulative headwater alteration, including for species that occupy a range of stream sizes but for which headwater streams diversify the network of interconnected populations or enhance survival for particular life stages. Developing a more predictive understanding of ecological patterns that may emerge on regional scales as a result of headwater alterations will require studies focused on components and pathways that connect headwaters to river, coastal and terrestrial ecosystems. Linkages between headwaters and downstream ecosystems cannot be discounted when addressing large-scale issues such as hypoxia in the Gulf of Mexico and global losses of biodiversity.

Catchment land use-dependent effects of barrage fishponds on the functioning of headwater streams.

PubMed

Four, Brian; Arce, Evelyne; Danger, Michaël; Gaillard, Juliette; Thomas, Marielle; Banas, Damien

2017-02-01

Extensive fish production systems in continental areas are often created by damming headwater streams. However, these lentic systems favour autochthonous organic matter production. As headwater stream functioning is essentially based on allochthonous organic matter (OM) supply, the presence of barrage fishponds on headwater streams might change the main food source for benthic communities. The goal of this study was thus to identify the effects of barrage fishponds on the functioning of headwater streams. To this end, we compared leaf litter breakdown (a key ecosystem function in headwater streams), their associated invertebrate communities and fungal biomass at sites upstream and downstream of five barrage fishponds in two dominant land use systems (three in forested catchments and two in agricultural catchments). We observed significant structural and functional differences between headwater stream ecosystems in agricultural catchments and those in forested catchments. Leaf litter decay was more rapid in forest streams, with a moderate, but not significant, increase in breakdown rate downstream from the barrage fishponds. In agricultural catchments, the trend was opposite with a 2-fold lower leaf litter breakdown rate at downstream sites compared to upstream sites. Breakdown rates observed at all sites were closely correlated with fungal biomass and shredder biomass. No effect of barrage fishponds were observed in this study concerning invertebrate community structure or functional feeding groups especially in agricultural landscapes. In forest streams, we observed a decrease in organic pollution (OP)-intolerant taxa at downstream sites that was correlated with an increase in OP-tolerant taxa. These results highlighted that the influence of barrage fishponds on headwater stream functioning is complex and land use dependent. It is therefore necessary to clearly understand the various mechanisms (competition for food resources, complementarities between autochthonous and allochthonous OM) that control ecosystem functioning in different contexts in order to optimize barrage fishpond management.

Implementation of Dynamic Extensible Adaptive Locally Exchangeable Measures (IDEALEM) v 0.1

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sim, Alex; Lee, Dongeun; Wu, K. John

2016-03-04

Handling large streaming data is essential for various applications such as network traffic analysis, social networks, energy cost trends, and environment modeling. However, it is in general intractable to store, compute, search, and retrieve large streaming data. This software addresses a fundamental issue, which is to reduce the size of large streaming data and still obtain accurate statistical analysis. As an example, when a high-speed network such as 100 Gbps network is monitored, the collected measurement data rapidly grows so that polynomial time algorithms (e.g., Gaussian processes) become intractable. One possible solution to reduce the storage of vast amounts ofmore » measured data is to store a random sample, such as one out of 1000 network packets. However, such static sampling methods (linear sampling) have drawbacks: (1) it is not scalable for high-rate streaming data, and (2) there is no guarantee of reflecting the underlying distribution. In this software, we implemented a dynamic sampling algorithm, based on the recent technology from the relational dynamic bayesian online locally exchangeable measures, that reduces the storage of data records in a large scale, and still provides accurate analysis of large streaming data. The software can be used for both online and offline data records.« less

Biogeochemistry of the Amazon River Basin: the role of aquatic ecosystems in the Amazon functioning

NASA Astrophysics Data System (ADS)

Victoria, R. L.; Ballester, V. R.; Krushe, A. V.; Richey, J. E.; Aufdenkampe, A. K.; Kavaguishi, N. L.; Gomes, B. M.; Victoria, D. D.; Montebello, A. A.; Niell, C.; Deegan, L.

2004-12-01

In this study we present the results of an integrated analysis of physical and anthropogenic controls of river biogeochemistry in Amazônia. At the meso-scale level, our results show that both soil properties and land use are the main drivers of river biogeochemistry and metabolism, with pasture cover and soil exchange cation capacity explaining 99% (p < 0.01) of the variability observed in surface water ions and nutrients concentrations. In small rivers, forest clearing can increase cations, P and C inputs. P and light are the main PPL limiting factors in forested streams, while in pasture streams N becomes limiting. P export to streams may increase or remain nearly undetectable after forest-to-pasture conversion, depending on soil type. Pasture streams on Oxisols have very low P export, while on Ultisols P export is increased. Conversions of forest to pasture leads to extensive growth of in channel Paspalum resulting in higher DOC concentrations and respiration rates. Pasture streams have higher DOC fluxes when compared to the forest ones. In pasture areas the soil are compacted, there is less infiltration and higher surface run off, leaching soil superficial layers and caring more DOC to the streams. In forest areas infiltration is deeper into the soils and canopy interaction is higher. Mineralogy and soil properties are key factors determining exports of nutrients to streams. Therefore, land use change effects on nutrient export from terrestrial to aquatic ecosystems and the atmosphere must be understood within the context of varying soil properties across the Amazon Basin.

Field Investigation of Stream-Aquifer Interactions: A Case Study in Coastal California

NASA Astrophysics Data System (ADS)

Pritchard-Peterson, D.; Malama, B.

2017-12-01

We report here results of a detailed investigation of the dynamic interaction between a stream and an alluvial aquifer at Swanton Pacific Ranch in the Scotts Creek watershed, Santa Cruz County, California. The aquifer is an important source of groundwater for cropland irrigation and for aquatic ecosystem support. Low summer base flows in Scotts Creek are a source of serious concern for land managers, fisheries biologists, and regulatory agencies due to the presence of federally protected steelhead trout and coho salmon. An understanding of the interaction between the stream and pumped aquifer will allow for assessment of the impacts of groundwater extraction on stream flows and is essential to establishing minimum flow requirements. This will aid in the development of sustainable riparian groundwater pumping practices that meet agricultural and ecological needs. Results of extensive direct-push sampling of the subsurface, laboratory falling-head permeameter tests and particle size analysis of aquifer sediments, multi-day pumping tests, long-term passive monitoring of aquifer hydraulic heads and stream stage and discharge, and electrical resistivity interrogation of the subsurface are reported here. Findings indicate that the permeable subsurface formation tapped by irrigation wells is a leaky semi-confined aquifer, overlain by a thin low permeability layer of silt and clay above which lies Scotts Creek. These results are particularly useful to land managers responsible for groundwater abstraction from wells that tap into the aquifer. Additionally, an index of stream-aquifer connectivity is proposed that would allow land managers to conveniently modify groundwater abstraction practices, minimizing concerns of stream depletion.

Geologic Map of the Albuquerque 30' x 60' Quadrangle, North-Central New Mexico

USGS Publications Warehouse

Williams, Paul L.; Cole, James C.

2007-01-01

The Albuquerque 30' x 60' quadrangle spans the Rio Grande rift between the Colorado Plateau and Great Plains geologic provinces, and includes parts of the Basin and Range and Southern Rocky Mountain physiographic provinces. Geologic units exposed in the quadrangle range in age from Early Proterozoic schist and granite to modern river alluvium. The principal geologic features of the area, however, chiefly reflect contractional folding and thrusting of the Late Cretaceous Laramide orogeny and the Neogene extension of the Rio Grande rift. Significant parts of the history of the rift in this region are displayed and documented by the geology exposed in the Albuquerque quadrangle. Post-Laramide erosion, beginning at about 60 Ma, is recorded by the Diamond Tail and Galisteo Formations (upper Paleocene and Eocene) that are preserved in the Hagan Basin and around the uplifted margins of the younger Rio Grande rift. Intermediate volcaniclastic deposits of the Espinaso Formation (upper Eocene and Oligocene) were shed in and around the contemporaneous volcanic-intrusive complexes of the Ortiz porphyry belt in the northeastern part of the quadrangle. The earliest fluvial sediments attributed to extension in the Rio Grande rift in this area are the Tanos and Blackshare Formations (upper Oligocene and Miocene) in the Hagan Basin, which indicate extension was underway by 25 Ma. Farther west, the oldest rift-filling sediments are eolian sand and interdune silty deposits of the Zia Formation (lower to middle Miocene). Major extension occurred during the Miocene, but subsidence and sedimentation were highly irregular from place to place. Parts of three rift sub-basins are known within the Albuquerque quadrangle, each basin locally as deep as about 14,000 ft, separated by less-extended zones (structural horsts) where the rift fill is much thinner. The geometry of these early, deep rift sub-basins suggests the primary extension direction was oriented northeast-southwest. Significant local folding and uplift within the complex rift seems to have occurred in the late Miocene, accompanied by erosion and recycling of earlier rift-fill sediments. This deformation may reflect clockwise reorientation of the primary extension direction to its Pliocene and current east-west alignment. Late Miocene and early Pliocene uplift and erosion were widespread in the region, as indicated by channeled and local angular unconformities at the bases of all Pliocene units, especially prominent along basin margins. These Pliocene fluvial and alluvial deposits (Ceja and Ancha Formations and Tuerto Gravel) and the upper part of the Cochiti Formation are all conspicuously coarser grained than the Miocene beds they cover, particularly near source areas along the margins of the rift. These observations together indicate that the regional streams flowed at much greater discharge than the Miocene streams and that the Pliocene onset of cooler, wetter climate worldwide was the most likely cause. Despite these higher discharge conditions, it appears there was no Pliocene trunk stream through the rift valley because the youngest Pliocene beds in the basin center are largely fine grained sand, pebbly sand, and sandy silt. No Pliocene cobble-gravel deposits, or thick crossbed sets indicative of major stream discharge, have been documented in the basin center. Considerable evidence indicates significant erosion began in late Pliocene time, coincident with and following eruption of abundant basalt from several local centers at about 2.7-2.6 Ma. The onset of central valley erosion marks the initiation of the first through-flowing, high-energy trunk stream (the 'ancestral' Rio Grande), which most likely was caused by integration of drainage southward through the Socorro region. No upper Pliocene fluvial deposits have been identified in the valley center; rather, a significant unconformity separates beds with medial (or earliest late) Blancan fauna (older than about 2.2 Ma) from

Presence of pharmaceuticals in fish collected from urban rivers in the U.S. EPA 2008–2009 National Rivers and Streams Assessment

EPA Science Inventory

Fish are good indicators of aquatic environment pollution because of their capability to uptake pollutants contained in water. Therefore, accumulation of pharmaceutical compounds in freshwater and marine fish and other aquatic organisms has been studied extensively in the last de...

Modeling ecohydrologic processes at Hubbard Brook: Initial results for Watershed 6 stream discharge and chemistry

EPA Science Inventory

The Hubbard Brook Long Term Ecological Research site has produced some of the most extensive and long-running databases on the hydrology, biology and chemistry of forest ecosystem responses to climate and forest harvest. We used these long-term databases to calibrate and apply G...

Leaders Who Learn: The Intersection of Behavioral Science, Adult Learning and Leadership

ERIC Educational Resources Information Center

Sabga, Natalya I.

2017-01-01

This study examines if a relationship exists among three rich research streams, specifically the behavioral science of motivation, adult learning and leadership. What motivates adult professionals to continue learning and how is that connected to their style and efficacy as leaders? An extension of literature to connect Andragogy,…

Levels of brominated diphenylether, dibenzo-P-dioxin, and dibenzofuran in flue gases of a municipal waste combustor

EPA Science Inventory

Due to the extensive use of brominated flame retardants (BFRs), including brominated diphenylether (BDE) formulations, for various domestic and industrial applications, the presence of brominated chemicals in the waste stream is to be expected for decades. As much as 40% to 50% o...

Ecosystem dynamics and disturbance in mountain wildernesses: assessing vulnerability of natural resources to change

Treesearch

Daniel B. Fagre; David L. Peterson

2000-01-01

An integrated program of ecosystem modeling and extensive field studies at Glacier and Olympic National Parks has quantified many of the ecological processes affected by climatic variability and disturbance. Models have successfully estimated snow distribution, annual watershed discharge, and stream temperature variation based on seven years of monitoring. Various...

Policies and Practices of Ability Grouping in New Zealand Intermediate Schools

ERIC Educational Resources Information Center

Hornby, Garry; Witte, Chrystal; Mitchell, David

2011-01-01

There is an extensive international research literature on the impact of ability grouping (e.g. streaming or banding) on children's academic and behavioural outcomes. However, it is questionable to what extent the findings of research on this topic have influenced the practice of pupil ability grouping in New Zealand intermediate schools. Nine…

An analytical design procedure for the determination of effective leading edge extensions on thick delta wings

NASA Technical Reports Server (NTRS)

Ghaffari, F.; Chaturvedi, S. K.

1984-01-01

An analytical design procedure for leading edge extensions (LEE) was developed for thick delta wings. This LEE device is designed to be mounted to a wing along the pseudo-stagnation stream surface associated with the attached flow design lift coefficient of greater than zero. The intended purpose of this device is to improve the aerodynamic performance of high subsonic and low supersonic aircraft at incidences above that of attached flow design lift coefficient, by using a vortex system emanating along the leading edges of the device. The low pressure associated with these vortices would act on the LEE upper surface and the forward facing area at the wing leading edges, providing an additional lift and effective leading edge thrust recovery. The first application of this technique was to a thick, round edged, twisted and cambered wing of approximately triangular planform having a sweep of 58 deg and aspect ratio of 2.30. The panel aerodynamics and vortex lattice method with suction analogy computer codes were employed to determine the pseudo-stagnation stream surface and an optimized LEE planform shape.

Hardware accelerator design for tracking in smart camera

NASA Astrophysics Data System (ADS)

Singh, Sanjay; Dunga, Srinivasa Murali; Saini, Ravi; Mandal, A. S.; Shekhar, Chandra; Vohra, Anil

2011-10-01

Smart Cameras are important components in video analysis. For video analysis, smart cameras needs to detect interesting moving objects, track such objects from frame to frame, and perform analysis of object track in real time. Therefore, the use of real-time tracking is prominent in smart cameras. The software implementation of tracking algorithm on a general purpose processor (like PowerPC) could achieve low frame rate far from real-time requirements. This paper presents the SIMD approach based hardware accelerator designed for real-time tracking of objects in a scene. The system is designed and simulated using VHDL and implemented on Xilinx XUP Virtex-IIPro FPGA. Resulted frame rate is 30 frames per second for 250x200 resolution video in gray scale.

A GPU-based large-scale Monte Carlo simulation method for systems with long-range interactions

NASA Astrophysics Data System (ADS)

Liang, Yihao; Xing, Xiangjun; Li, Yaohang

2017-06-01

In this work we present an efficient implementation of Canonical Monte Carlo simulation for Coulomb many body systems on graphics processing units (GPU). Our method takes advantage of the GPU Single Instruction, Multiple Data (SIMD) architectures, and adopts the sequential updating scheme of Metropolis algorithm. It makes no approximation in the computation of energy, and reaches a remarkable 440-fold speedup, compared with the serial implementation on CPU. We further use this method to simulate primitive model electrolytes, and measure very precisely all ion-ion pair correlation functions at high concentrations. From these data, we extract the renormalized Debye length, renormalized valences of constituent ions, and renormalized dielectric constants. These results demonstrate unequivocally physics beyond the classical Poisson-Boltzmann theory.

Line-drawing algorithms for parallel machines

NASA Technical Reports Server (NTRS)

Pang, Alex T.

1990-01-01

The fact that conventional line-drawing algorithms, when applied directly on parallel machines, can lead to very inefficient codes is addressed. It is suggested that instead of modifying an existing algorithm for a parallel machine, a more efficient implementation can be produced by going back to the invariants in the definition. Popular line-drawing algorithms are compared with two alternatives; distance to a line (a point is on the line if sufficiently close to it) and intersection with a line (a point on the line if an intersection point). For massively parallel single-instruction-multiple-data (SIMD) machines (with thousands of processors and up), the alternatives provide viable line-drawing algorithms. Because of the pixel-per-processor mapping, their performance is independent of the line length and orientation.

Electromagnetic physics models for parallel computing architectures

DOE PAGES

Amadio, G.; Ananya, A.; Apostolakis, J.; ...

2016-11-21

The recent emergence of hardware architectures characterized by many-core or accelerated processors has opened new opportunities for concurrent programming models taking advantage of both SIMD and SIMT architectures. GeantV, a next generation detector simulation, has been designed to exploit both the vector capability of mainstream CPUs and multi-threading capabilities of coprocessors including NVidia GPUs and Intel Xeon Phi. The characteristics of these architectures are very different in terms of the vectorization depth and type of parallelization needed to achieve optimal performance. In this paper we describe implementation of electromagnetic physics models developed for parallel computing architectures as a part ofmore » the GeantV project. Finally, the results of preliminary performance evaluation and physics validation are presented as well.« less

Pulse-coupled neural network implementation in FPGA

NASA Astrophysics Data System (ADS)

Waldemark, Joakim T. A.; Lindblad, Thomas; Lindsey, Clark S.; Waldemark, Karina E.; Oberg, Johnny; Millberg, Mikael

1998-03-01

Pulse Coupled Neural Networks (PCNN) are biologically inspired neural networks, mainly based on studies of the visual cortex of small mammals. The PCNN is very well suited as a pre- processor for image processing, particularly in connection with object isolation, edge detection and segmentation. Several implementations of PCNN on von Neumann computers, as well as on special parallel processing hardware devices (e.g. SIMD), exist. However, these implementations are not as flexible as required for many applications. Here we present an implementation in Field Programmable Gate Arrays (FPGA) together with a performance analysis. The FPGA hardware implementation may be considered a platform for further, extended implementations and easily expanded into various applications. The latter may include advanced on-line image analysis with close to real-time performance.

First experience of vectorizing electromagnetic physics models for detector simulation

NASA Astrophysics Data System (ADS)

Amadio, G.; Apostolakis, J.; Bandieramonte, M.; Bianchini, C.; Bitzes, G.; Brun, R.; Canal, P.; Carminati, F.; de Fine Licht, J.; Duhem, L.; Elvira, D.; Gheata, A.; Jun, S. Y.; Lima, G.; Novak, M.; Presbyterian, M.; Shadura, O.; Seghal, R.; Wenzel, S.

2015-12-01

The recent emergence of hardware architectures characterized by many-core or accelerated processors has opened new opportunities for concurrent programming models taking advantage of both SIMD and SIMT architectures. The GeantV vector prototype for detector simulations has been designed to exploit both the vector capability of mainstream CPUs and multi-threading capabilities of coprocessors including NVidia GPUs and Intel Xeon Phi. The characteristics of these architectures are very different in terms of the vectorization depth, parallelization needed to achieve optimal performance or memory access latency and speed. An additional challenge is to avoid the code duplication often inherent to supporting heterogeneous platforms. In this paper we present the first experience of vectorizing electromagnetic physics models developed for the GeantV project.

Arsenic Redistribution Between Sediments and Water Near a Highly Contaminated Source

DOE Office of Scientific and Technical Information (OSTI.GOV)

Keimowitz,A.; Zheng, Y.; Chillrud, S.

2005-01-01

Mechanisms controlling arsenic partitioning between sediment, groundwater, porewaters, and surface waters were investigated at the Vineland Chemical Company Superfund site in southern New Jersey. Extensive inorganic and organic arsenic contamination at this site (historical total arsenic >10 000 {micro}g L{sup -1} or >130 {micro}M in groundwater) has spread downstream to the Blackwater Branch, Maurice River, and Union Lake. Stream discharge was measured in the Blackwater Branch, and water samples and sediment cores were obtained from both the stream and the lake. Porewaters and sediments were analyzed for arsenic speciation as well as total arsenic, iron, manganese, and sulfur, and theymore » indicate that geochemical processes controlling mobility of arsenic were different in these two locations. Arsenic partitioning in the Blackwater Branch was consistent with arsenic primarily being controlled by sulfur, whereas in Union Lake, the data were consistent with arsenic being controlled largely by iron. Stream discharge and arsenic concentrations indicate that despite large-scale groundwater extraction and treatment, >99% of arsenic transport away from the site results from continued discharge of high arsenic groundwater to the stream, rather than remobilization of arsenic in stream sediments. Changing redox conditions would be expected to change arsenic retention on sediments. In sulfur-controlled stream sediments, more oxic conditions could oxidize arsenic-bearing sulfide minerals, thereby releasing arsenic to porewaters and streamwaters; in iron-controlled lake sediments, more reducing conditions could release arsenic from sediments via reductive dissolution of arsenic-bearing iron oxides.« less

Experiments in MPEG-4 content authoring, browsing, and streaming

NASA Astrophysics Data System (ADS)

Puri, Atul; Schmidt, Robert L.; Basso, Andrea; Civanlar, Mehmet R.

2000-12-01

In this paper, within the context of the MPEG-4 standard we report on preliminary experiments in three areas -- authoring of MPEG-4 content, a player/browser for MPEG-4 content, and streaming of MPEG-4 content. MPEG-4 is a new standard for coding of audiovisual objects; the core of MPEG-4 standard is complete while amendments are in various stages of completion. MPEG-4 addresses compression of audio and visual objects, their integration by scene description, and interactivity of users with such objects. MPEG-4 scene description is based on VRML like language for 3D scenes, extended to 2D scenes, and supports integration of 2D and 3D scenes. This scene description language is called BIFS. First, we introduce the basic concepts behind BIFS and then show with an example, textual authoring of different components needed to describe an audiovisual scene in BIFS; the textual BIFS is then saved as compressed binary file/s for storage or transmission. Then, we discuss a high level design of an MPEG-4 player/browser that uses the main components from authoring such as encoded BIFS stream, media files it refers to, and multiplexed object descriptor stream to play an MPEG-4 scene. We also discuss our extensions to such a player/browser. Finally, we present our work in streaming of MPEG-4 -- the payload format, modification to client MPEG-4 player/browser, server-side infrastructure and example content used in our MPEG-4 streaming experiments.

Source Areas of Water and Nitrate in a Peatland Catchment, Minnesota, USA

NASA Astrophysics Data System (ADS)

Sebestyen, S. D.

2017-12-01

In nitrogen polluted forests, stream nitrate concentrations increase and some unprocessed atmospheric nitrate may be transported to streams during stormflow events. This understanding has emerged from forests with upland mineral soils. In contrast, catchments with northern peatlands may have both upland soils and lowlands with deep organic soils, each with unique effects on nitrate transport and processing. While annual budgets show nitrate yields to be relatively lower from peatland than upland-dominated catchments, little is known about particular runoff events when stream nitrate concentrations have been higher (despite long periods with little or no nitrate in outlet streams) or the reasons why. I used site knowledge and expansive/extensive monitoring at the Marcell Experimental Forest in Minnesota, along with a targeted 2-year study to determine landscape areas, water sources, and nitrate sources that affected stream nitrate variation in a peatland catchment. I combined streamflow, upland runoff, snow amount, and frost depth data from long-term monitoring with nitrate concentration, yield, and isotopic data to show that up to 65% of stream nitrate during snowmelt of 2009 and 2010 was unprocessed atmospheric nitrate. Up to 46% of subsurface runoff from upland soils during 2009 was unprocessed atmospheric nitrate, which shows the uplands to be a stream nitrate source during 2009, but not during 2010 when upland runoff concentrations were below the detection limit. Differences are attributable to variations in water and nitrate sources. Little snow (a nitrate source), less upland runoff relative to peatland runoff, and deeper soil frost in the peatland caused a relatively larger input of nitrate from the uplands to the stream during 2009 and the peatland to the stream during 2010. Despite the near-absence of stream nitrate during much of rest of the year, these findings show an important time when nitrate transport affected downstream aquatic ecosystems, reasons why nitrate was transported, and that atmospheric nitrate pollution had a direct effect on a stream in a peatland catchment. Furthermore, this work illustrates how long-term monitoring when coupled with shorter-duration studies allows contemporary questions to be addressed within legacy catchment studies.

Applications of High-Resolution LiDAR Data for the Christina River Basin CZO

NASA Astrophysics Data System (ADS)

Hicks, N. S.; Aufdenkampe, A. K.; Hicks, S. D.

2011-12-01

High-resolution LiDAR data allows for fine scale geomorphic assessment over relatively large spatial extents. Previously available DEMs with a resolution of ten meters or more did not provide adequate resolution for geomorphic characterization of small streams and watersheds or the identification of changes in stream morphology over time. High-resolution LiDAR data for a portion of the Christina River Basin Critical Zone Observatory (CRB-CZO) was obtained during both leaf-off and leaf-on time periods in 2010. Topographic data from these flights is being analyzed with the intent of geomorphic applications such as stream morphology, sediment transport studies, and the evaluation of alluvial deposits. These data and resultant products will also be used in hydrologic and biogeochemical modeling and in biologic and biogeochemical studies of these streams, which are long-term study sites. The LiDAR data also facilitate informed instrument placement and will be used for vegetation studies. The LiDAR data for the CRB-CZO has been used to create a variety of LiDAR based topographic data products including TINs and 0.5-m DEMs. LiDAR derived slope and elevation products were combined with LiDAR intensity images to identify stream channel boundaries and stream centerlines for third through first-order streams. High-resolution slope data also aided in floodplain characterization of these small streams. These high precision stream channel and floodplain characterizations would not have been otherwise possible without extensive field surveying. Future LiDAR flights will allow for the identification of changes in channel morphology over time in low order basins. These characterizations are of particular interest in comparisons between forested and meadow reaches, and in studying the effects of changes in land-use on channel morphology. High-resolution LiDAR data allow for the generation of surface characterizations of importance to a wide range of interdisciplinary researchers.

Modular GIS Framework for National Scale Hydrologic and Hydraulic Modeling Support

NASA Astrophysics Data System (ADS)

Djokic, D.; Noman, N.; Kopp, S.

2015-12-01

Geographic information systems (GIS) have been extensively used for pre- and post-processing of hydrologic and hydraulic models at multiple scales. An extensible GIS-based framework was developed for characterization of drainage systems (stream networks, catchments, floodplain characteristics) and model integration. The framework is implemented as a set of free, open source, Python tools and builds on core ArcGIS functionality and uses geoprocessing capabilities to ensure extensibility. Utilization of COTS GIS core capabilities allows immediate use of model results in a variety of existing online applications and integration with other data sources and applications.The poster presents the use of this framework to downscale global hydrologic models to local hydraulic scale and post process the hydraulic modeling results and generate floodplains at any local resolution. Flow forecasts from ECMWF or WRF-Hydro are downscaled and combined with other ancillary data for input into the RAPID flood routing model. RAPID model results (stream flow along each reach) are ingested into a GIS-based scale dependent stream network database for efficient flow utilization and visualization over space and time. Once the flows are known at localized reaches, the tools can be used to derive the floodplain depth and extent for each time step in the forecast at any available local resolution. If existing rating curves are available they can be used to relate the flow to the depth of flooding, or synthetic rating curves can be derived using the tools in the toolkit and some ancillary data/assumptions. The results can be published as time-enabled spatial services to be consumed by web applications that use floodplain information as an input. Some of the existing online presentation templates can be easily combined with available online demographic and infrastructure data to present the impact of the potential floods on the local community through simple, end user products. This framework has been successfully used in both the data rich environments as well as in locales with minimum available spatial and hydrographic data.

Feasibility of combining two aquatic benthic macroinvertebrate community databases for water-quality assessment

USGS Publications Warehouse

Lenz, Bernard N.

1997-01-01

An important part of the U.S. Geological Survey's (USGS) National Water-Quality Assessment (NAWQA) Program is the analysis of existing data in each of the NAWQA study areas. The Wisconsin Department of Natural Resources (WDNR) has an extensive aquatic benthic macroinvertebrate communities in streams (benthic invertebrates) database maintained by the University of Wisconsin-Stevens Point. This database has data which date back to 1984 and includes data from streams within the Western Lake Michigan Drainages (WMIC) study area (fig. 1). This report looks at the feasibility of USGS scientists supplementing the data they collect with data from the WDNR database when assessing water quality in the study area.

Historical land-use changes and potential effects on stream disturbance in the Ozark Plateaus, Missouri

USGS Publications Warehouse

Jacobson, Robert B.; Primm, Alexander T.

1997-01-01

Land-use changes have been blamed for creating disturbance in the morphology of streams in the Ozark Plateaus, Missouri (hereafter referred to as the "Ozarks"). Historical evidence and stratigraphic observations document that streams have been aggraded by substantial quantities of gravel beginning sometime at or near the time of European settlement of the Ozarks. Before European settlement, streams were depositing a mixed sediment load of gravel bedload and silty overbank sediment. Observations of early explorers conspicuously lack descriptions of extensive gravel bars; observations of geologists working during the middle to late 1800's before significant landuse disturbance, however, include descriptions of large quantities of gravel in stream banks and beds.The first change in land cover as settlement progressed from the early 1800's to approximately 1880 was replacement of valley-bottom forest with cultivated fields and pastures. At the same time, suppression of wildfires in the uplands caused an increase of woodland with woody understory at the expense of grassland and oak savannah. Valley-bottom clearing probably initiated some direct disturbance of stream channels, but fire suppression would have decreased runoff and sediment yield from uplands.Beginning sometime from 1870 to 1880 and continuing until 1920, commercial timber companies began large operations in the Ozarks to harvest shortleaf pine for sawlogs and oak for railroad ties. Selective cutting of large timber, use of livestock for skidding logs from the forest, and avoidance of the steeper slopes minimized the effect of this phase of logging on runoff and sediment supply of uplands and valley-side slopes. Continued decreases in the erosional resistance of valley bottoms through clearing and road building and the incidence of extreme regional floods from 1895 to 1915 probably caused initiation of moderate stream disturbance. This hypothesis is supported by historical and oral-historical observations that stream instability began before the peak of upland destabilization from 1920 to 1960.The post-Timber-boom period (1920-60) included the institution of annual burning of uplands and cut-over valley-side slopes, increased grazing on open range, and increased use of marginal land for cultivated crops. Models for landuse controls on annual runoff, storm runoff, and soil erosion indicate that this period should have been the most effective in creating stream disturbance. Written historical sources and oral-historical accounts indicate that erosion was notable mainly on lands in row-crop cultivation. Oral-history respondents consistently recall that smaller streams had more discharge for longer periods from 1920 to 1960 than from 1960 to 1993; many additionally observed that floods are "flashier" under present-day (1993) conditions. Changes in the timing of hydrographs probably relate to changes in upland and riparian zone vegetation that decreased storage and flow resistance. Probably the most destabilizing effect on Ozarks stream channels during this period was caused by livestock on the open range that concentrated in valley bottoms and destroyed riparian vegetation in the channels and on banks. Destruction of riparian vegetation in small valleys may have encouraged headward migration of channels, resulting in extension of the drainage network and accelerated release of gravel from storage in the small valleys. This hypothesis is supported by lack of other sources for the large quantity of gravel in Ozarks streams and oral-historical observations that gravel came out of the runs, rather than from slopes.From 1960 to 1993, cultivated fields and total improved land in farms decreased, but cattle populations continued to increase. This increase in grazing density has the potential to maintain runoff and sediment delivery to streams at rates higher than natural background rates. Whereas some riparian zones have been allowed to grow up into bottom-land forest, this stabilizing effect occurs on only a small part of valley-bottom land. Recovery processes aided by riparian vegetation are limited by channel instability and frequent, large floods.

Historical land-use changes and potential effects on stream disturbance in the Ozark Plateaus, Missouri

USGS Publications Warehouse

Jacobson, Robert B.; Primm, Alexander T.

1994-01-01

Land-use changes have been blamed for creating disturbance in the morphology of streams in the Ozark Plateaus, Missouri (hereafter referred to as the Ozarks). Historical evidence and stratigraphic observations document that streams have been aggraded by substantial quantities of gravel beginning sometime at or near the time of European settlement of the Ozarks. Before European settlement, streams were depositing a mixed sediment load of gravel bedload and silty over-bank sediment. Observations of early explorers conspicuously lack descriptions of extensive gravel bars; observations of geologists working during the middle to late 1800's before significant land-use disturbance, however, include descriptions of large quantities of gravel in stream banks and beds.The first change in land cover as settlement progressed from the early 1800's to approximately 1880 was replacement of valley-bottom forest with cultivated fields and pastures. At the same time, suppression of wildfires in the uplands caused an increase of woodland with woody understory at the expense of grassland and oak savannah. Valley-bottom clearing probably initiated some direct disturbance of stream channels, but fire suppression would have decreased runoff and sediment yield from uplands.Beginning sometime during 1870 to 1880 and continuing until 1920, commercial timber companies began large operations in the Ozarks harvesting shortleaf pine for sawlogs and oak for railroad ties. Selective cutting of large timber, use of livestock for skidding logs from the forest, and avoidance of the steeper slopes minimized the effect of this phase of logging on runoff and sediment supply of uplands and valley-side slopes. Continued decreases in the erosional resistance of valley bottoms through clearing and road building, and the incidence of extreme regional floods from 1895 to 1915, probably caused initiation of moderate stream disturbance. This hypothesis is supported by historical and oral-historical observations that stream instability began before the peak of upland destabilization from 1920 to 1960.The post-Timber-boom period (1920 to 1960) included the institution of annual burning of uplands and cut-over valley-side slopes, increased grazing on open range, and increased use of marginal land for cultivated crops. Models for land-use controls on annual runoff, storm runoff, and soil erosion indicate this period should have been the most effective in creating stream disturbance. Written historical sources and oral-historical accounts indicate that erosion was notable mainly on lands in row-crop cultivation. Oral-history respondents consistently recall that smaller streams had more discharge for longer periods during 1920 to 1960 than during 1960 to 1993; many additionally observed that floods are "flashier" under present-day (1993) conditions. Changes in the timing of hydrographs probably relate to changes in upland and riparian zone vegetation that decreased storage and flow resistance. Probably the most destabilizing effect on Ozarks stream channels during this period was caused by livestock on the open range that concentrated in valley bottoms and destroyed riparian vegetation in the channels and on banks. Destruction of riparian vegetation in small valleys may have encouraged headward migration of channels, resulting in extension of the drainage network and accelerated release of gravel from storage in the small valleys. This hypothesis is supported by lack of other sources for the large quantity of gravel in Ozarks streams and oral-historical observations that gravel came out of the runs, rather than from slopes.From 1960 to 1993, cultivated fields and total improved land in farms decreased, but cattle populations continued to increase. This increase in grazing density has the potential to maintain runoff and sediment delivery to streams at rates higher than natural background rates. Whereas some riparian zones have been allowed to grow up into bottom-land forest, this stabilizing effect occurs on only a small part of valley-bottom land. Recovery processes aided by riparian vegetation are limited by channel instability and frequent, large floods.

Dissolved solids in basin-fill aquifers and streams in the southwestern United States

USGS Publications Warehouse

Anning, David W.; Bauch, Nancy J.; Gerner, Steven J.; Flynn, Marilyn E.; Hamlin, Scott N.; Moore, Stephanie J.; Schaefer, Donald H.; Anderholm, Scott K.; Spangler, Lawrence E.

2007-01-01

The U.S. Geological Survey National Water-Quality Assessment Program performed a regional study in the Southwestern United States (Southwest) to describe the status and trends of dissolved solids in basin-fill aquifers and streams and to determine the natural and human factors that affect dissolved solids. Basin-fill aquifers, which include the Rio Grande aquifer system, Basin and Range basin-fill aquifers, and California Coastal Basin aquifers, are the most extensively used ground-water supplies in the Southwest. Rivers, such as the Colorado, the Rio Grande, and their tributaries, are also important water supplies, as are several smaller river systems that drain internally within the Southwest, or drain externally to the Pacific Ocean in southern California. The study included four components that characterize (1) the spatial distribution of dissolved-solids concentrations in basin-fill aquifers, and dissolved-solids concentrations, loads, and yields in streams; (2) natural and human factors that affect dissolved-solids concentrations; (3) major sources and areas of accumulation of dissolved solids; and (4) trends in dissolved-solids concentrations over time in basin-fill aquifers and streams, and the relation of trends to natural or human factors.

The dorsal stream contribution to phonological retrieval in object naming

PubMed Central

Faseyitan, Olufunsho; Kim, Junghoon; Coslett, H. Branch

2012-01-01

Meaningful speech, as exemplified in object naming, calls on knowledge of the mappings between word meanings and phonological forms. Phonological errors in naming (e.g. GHOST named as ‘goath’) are commonly seen in persisting post-stroke aphasia and are thought to signal impairment in retrieval of phonological form information. We performed a voxel-based lesion-symptom mapping analysis of 1718 phonological naming errors collected from 106 individuals with diverse profiles of aphasia. Voxels in which lesion status correlated with phonological error rates localized to dorsal stream areas, in keeping with classical and contemporary brain-language models. Within the dorsal stream, the critical voxels were concentrated in premotor cortex, pre- and postcentral gyri and supramarginal gyrus with minimal extension into auditory-related posterior temporal and temporo-parietal cortices. This challenges the popular notion that error-free phonological retrieval requires guidance from sensory traces stored in posterior auditory regions and points instead to sensory-motor processes located further anterior in the dorsal stream. In a separate analysis, we compared the lesion maps for phonological and semantic errors and determined that there was no spatial overlap, demonstrating that the brain segregates phonological and semantic retrieval operations in word production. PMID:23171662

Exploring a QoS Driven Scheduling Approach for Peer-to-Peer Live Streaming Systems with Network Coding

PubMed Central

Cui, Laizhong; Lu, Nan; Chen, Fu

2014-01-01

Most large-scale peer-to-peer (P2P) live streaming systems use mesh to organize peers and leverage pull scheduling to transmit packets for providing robustness in dynamic environment. The pull scheduling brings large packet delay. Network coding makes the push scheduling feasible in mesh P2P live streaming and improves the efficiency. However, it may also introduce some extra delays and coding computational overhead. To improve the packet delay, streaming quality, and coding overhead, in this paper are as follows. we propose a QoS driven push scheduling approach. The main contributions of this paper are: (i) We introduce a new network coding method to increase the content diversity and reduce the complexity of scheduling; (ii) we formulate the push scheduling as an optimization problem and transform it to a min-cost flow problem for solving it in polynomial time; (iii) we propose a push scheduling algorithm to reduce the coding overhead and do extensive experiments to validate the effectiveness of our approach. Compared with previous approaches, the simulation results demonstrate that packet delay, continuity index, and coding ratio of our system can be significantly improved, especially in dynamic environments. PMID:25114968

Reconstructing Native American population history.

PubMed

Reich, David; Patterson, Nick; Campbell, Desmond; Tandon, Arti; Mazieres, Stéphane; Ray, Nicolas; Parra, Maria V; Rojas, Winston; Duque, Constanza; Mesa, Natalia; García, Luis F; Triana, Omar; Blair, Silvia; Maestre, Amanda; Dib, Juan C; Bravi, Claudio M; Bailliet, Graciela; Corach, Daniel; Hünemeier, Tábita; Bortolini, Maria Cátira; Salzano, Francisco M; Petzl-Erler, María Luiza; Acuña-Alonzo, Victor; Aguilar-Salinas, Carlos; Canizales-Quinteros, Samuel; Tusié-Luna, Teresa; Riba, Laura; Rodríguez-Cruz, Maricela; Lopez-Alarcón, Mardia; Coral-Vazquez, Ramón; Canto-Cetina, Thelma; Silva-Zolezzi, Irma; Fernandez-Lopez, Juan Carlos; Contreras, Alejandra V; Jimenez-Sanchez, Gerardo; Gómez-Vázquez, Maria José; Molina, Julio; Carracedo, Angel; Salas, Antonio; Gallo, Carla; Poletti, Giovanni; Witonsky, David B; Alkorta-Aranburu, Gorka; Sukernik, Rem I; Osipova, Ludmila; Fedorova, Sardana A; Vasquez, René; Villena, Mercedes; Moreau, Claudia; Barrantes, Ramiro; Pauls, David; Excoffier, Laurent; Bedoya, Gabriel; Rothhammer, Francisco; Dugoujon, Jean-Michel; Larrouy, Georges; Klitz, William; Labuda, Damian; Kidd, Judith; Kidd, Kenneth; Di Rienzo, Anna; Freimer, Nelson B; Price, Alkes L; Ruiz-Linares, Andrés

2012-08-16

The peopling of the Americas has been the subject of extensive genetic, archaeological and linguistic research; however, central questions remain unresolved. One contentious issue is whether the settlement occurred by means of a single migration or multiple streams of migration from Siberia. The pattern of dispersals within the Americas is also poorly understood. To address these questions at a higher resolution than was previously possible, we assembled data from 52 Native American and 17 Siberian groups genotyped at 364,470 single nucleotide polymorphisms. Here we show that Native Americans descend from at least three streams of Asian gene flow. Most descend entirely from a single ancestral population that we call 'First American'. However, speakers of Eskimo-Aleut languages from the Arctic inherit almost half their ancestry from a second stream of Asian gene flow, and the Na-Dene-speaking Chipewyan from Canada inherit roughly one-tenth of their ancestry from a third stream. We show that the initial peopling followed a southward expansion facilitated by the coast, with sequential population splits and little gene flow after divergence, especially in South America. A major exception is in Chibchan speakers on both sides of the Panama isthmus, who have ancestry from both North and South America.

Performance Modeling in CUDA Streams - A Means for High-Throughput Data Processing.

PubMed

Li, Hao; Yu, Di; Kumar, Anand; Tu, Yi-Cheng

2014-10-01

Push-based database management system (DBMS) is a new type of data processing software that streams large volume of data to concurrent query operators. The high data rate of such systems requires large computing power provided by the query engine. In our previous work, we built a push-based DBMS named G-SDMS to harness the unrivaled computational capabilities of modern GPUs. A major design goal of G-SDMS is to support concurrent processing of heterogenous query processing operations and enable resource allocation among such operations. Understanding the performance of operations as a result of resource consumption is thus a premise in the design of G-SDMS. With NVIDIA's CUDA framework as the system implementation platform, we present our recent work on performance modeling of CUDA kernels running concurrently under a runtime mechanism named CUDA stream . Specifically, we explore the connection between performance and resource occupancy of compute-bound kernels and develop a model that can predict the performance of such kernels. Furthermore, we provide an in-depth anatomy of the CUDA stream mechanism and summarize the main kernel scheduling disciplines in it. Our models and derived scheduling disciplines are verified by extensive experiments using synthetic and real-world CUDA kernels.

A Clustering Algorithm for Ecological Stream Segment Identification from Spatially Extensive Digital Databases

NASA Astrophysics Data System (ADS)

Brenden, T. O.; Clark, R. D.; Wiley, M. J.; Seelbach, P. W.; Wang, L.

2005-05-01

Remote sensing and geographic information systems have made it possible to attribute variables for streams at increasingly detailed resolutions (e.g., individual river reaches). Nevertheless, management decisions still must be made at large scales because land and stream managers typically lack sufficient resources to manage on an individual reach basis. Managers thus require a method for identifying stream management units that are ecologically similar and that can be expected to respond similarly to management decisions. We have developed a spatially-constrained clustering algorithm that can merge neighboring river reaches with similar ecological characteristics into larger management units. The clustering algorithm is based on the Cluster Affinity Search Technique (CAST), which was developed for clustering gene expression data. Inputs to the clustering algorithm are the neighbor relationships of the reaches that comprise the digital river network, the ecological attributes of the reaches, and an affinity value, which identifies the minimum similarity for merging river reaches. In this presentation, we describe the clustering algorithm in greater detail and contrast its use with other methods (expert opinion, classification approach, regular clustering) for identifying management units using several Michigan watersheds as a backdrop.

Waste minimization for commercial radioactive materials users generating low-level radioactive waste. Revision 1

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fischer, D.K.; Gitt, M.; Williams, G.A.

1991-07-01

The objective of this document is to provide a resource for all states and compact regions interested in promoting the minimization of low-level radioactive waste (LLW). This project was initiated by the Commonwealth of Massachusetts, and Massachusetts waste streams have been used as examples; however, the methods of analysis presented here are applicable to similar waste streams generated elsewhere. This document is a guide for states/compact regions to use in developing a system to evaluate and prioritize various waste minimization techniques in order to encourage individual radioactive materials users (LLW generators) to consider these techniques in their own independent evaluations.more » This review discusses the application of specific waste minimization techniques to waste streams characteristic of three categories of radioactive materials users: (1) industrial operations using radioactive materials in the manufacture of commercial products, (2) health care institutions, including hospitals and clinics, and (3) educational and research institutions. Massachusetts waste stream characterization data from key radioactive materials users in each category are used to illustrate the applicability of various minimization techniques. The utility group is not included because extensive information specific to this category of LLW generators is available in the literature.« less

Waste minimization for commercial radioactive materials users generating low-level radioactive waste

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fischer, D.K.; Gitt, M.; Williams, G.A.

1991-07-01

The objective of this document is to provide a resource for all states and compact regions interested in promoting the minimization of low-level radioactive waste (LLW). This project was initiated by the Commonwealth of Massachusetts, and Massachusetts waste streams have been used as examples; however, the methods of analysis presented here are applicable to similar waste streams generated elsewhere. This document is a guide for states/compact regions to use in developing a system to evaluate and prioritize various waste minimization techniques in order to encourage individual radioactive materials users (LLW generators) to consider these techniques in their own independent evaluations.more » This review discusses the application of specific waste minimization techniques to waste streams characteristic of three categories of radioactive materials users: (1) industrial operations using radioactive materials in the manufacture of commercial products, (2) health care institutions, including hospitals and clinics, and (3) educational and research institutions. Massachusetts waste stream characterization data from key radioactive materials users in each category are used to illustrate the applicability of various minimization techniques. The utility group is not included because extensive information specific to this category of LLW generators is available in the literature.« less

Detailed Hydrographic Feature Extraction from High-Resolution LiDAR Data

DOE Office of Scientific and Technical Information (OSTI.GOV)

Danny L. Anderson

Detailed hydrographic feature extraction from high-resolution light detection and ranging (LiDAR) data is investigated. Methods for quantitatively evaluating and comparing such extractions are presented, including the use of sinuosity and longitudinal root-mean-square-error (LRMSE). These metrics are then used to quantitatively compare stream networks in two studies. The first study examines the effect of raster cell size on watershed boundaries and stream networks delineated from LiDAR-derived digital elevation models (DEMs). The study confirmed that, with the greatly increased resolution of LiDAR data, smaller cell sizes generally yielded better stream network delineations, based on sinuosity and LRMSE. The second study demonstrates amore » new method of delineating a stream directly from LiDAR point clouds, without the intermediate step of deriving a DEM. Direct use of LiDAR point clouds could improve efficiency and accuracy of hydrographic feature extractions. The direct delineation method developed herein and termed “mDn”, is an extension of the D8 method that has been used for several decades with gridded raster data. The method divides the region around a starting point into sectors, using the LiDAR data points within each sector to determine an average slope, and selecting the sector with the greatest downward slope to determine the direction of flow. An mDn delineation was compared with a traditional grid-based delineation, using TauDEM, and other readily available, common stream data sets. Although, the TauDEM delineation yielded a sinuosity that more closely matches the reference, the mDn delineation yielded a sinuosity that was higher than either the TauDEM method or the existing published stream delineations. Furthermore, stream delineation using the mDn method yielded the smallest LRMSE.« less

Formal development of a clock synchronization circuit

NASA Technical Reports Server (NTRS)

Miner, Paul S.

1995-01-01

This talk presents the latest stage in formal development of a fault-tolerant clock synchronization circuit. The development spans from a high level specification of the required properties to a circuit realizing the core function of the system. An abstract description of an algorithm has been verified to satisfy the high-level properties using the mechanical verification system EHDM. This abstract description is recast as a behavioral specification input to the Digital Design Derivation system (DDD) developed at Indiana University. DDD provides a formal design algebra for developing correct digital hardware. Using DDD as the principle design environment, a core circuit implementing the clock synchronization algorithm was developed. The design process consisted of standard DDD transformations augmented with an ad hoc refinement justified using the Prototype Verification System (PVS) from SRI International. Subsequent to the above development, Wilfredo Torres-Pomales discovered an area-efficient realization of the same function. Establishing correctness of this optimization requires reasoning in arithmetic, so a general verification is outside the domain of both DDD transformations and model-checking techniques. DDD represents digital hardware by systems of mutually recursive stream equations. A collection of PVS theories was developed to aid in reasoning about DDD-style streams. These theories include a combinator for defining streams that satisfy stream equations, and a means for proving stream equivalence by exhibiting a stream bisimulation. DDD was used to isolate the sub-system involved in Torres-Pomales' optimization. The equivalence between the original design and the optimized verified was verified in PVS by exhibiting a suitable bisimulation. The verification depended upon type constraints on the input streams and made extensive use of the PVS type system. The dependent types in PVS provided a useful mechanism for defining an appropriate bisimulation.

Perched groundwater-surface interactions and their consequences in stream flow generation in a semi-arid headwater catchment

NASA Astrophysics Data System (ADS)

Molenat, Jerome; Bouteffeha, Maroua; Raclot, Damien; Bouhlila, Rachida

2013-04-01

In semi-arid headwater catchment, it is usually admitted that stream flow comes predominantly from Hortonian overland flow (infiltration excess overland flow). Consequently, subsurface flow processes, and especially perched or shallow groundwater flow, have not been studied extensively. Here we made the assumption that perched groundwater flow could play a significant role in stream flow generation in semi-arid catchment. To test this assumption, we analyzed stream flow time series of a headwater catchment in the Tunisian Cap Bon region and quantified the flow fraction coming from groundwater discharge and that from overland flow. Furthermore, the dynamics of the perched groundwater was analyzed, by focusing on the different perched groundwater-surface interaction processes : diffuse and local infiltration, diffuse exfiltration, and direct groundwater discharge to the stream channel. This work is based on the 2.6 km² Kamech catchment (Tunisia), which belongs to the long term Mediterranean hydrological observatory OMERE (Voltz and Albergel, 2002). Results show that even though Hortonian overland flow was the main hydrological process governing the stream flow generation, groundwater discharge contribution to the stream channel annually accounted for from 10% to 20 % depending on the year. Furthermore, at some periods, rising of groundwater table to the soil surface in bottom land areas provided evidences of the occurrence of saturation excess overland flow processes during some storm events. Reference Voltz , M. and Albergel , J., 2002. OMERE : Observatoire Méditerranéen de l'Environnement Rural et de l'Eau - Impact des actions anthropiques sur les transferts de masse dans les hydrosystèmes méditerranéens ruraux. Proposition d'Observatoire de Recherche en Environnement, Ministère de la Recherche.

Least Disturbed Condition for European Mediterranean rivers.

PubMed

Feio, M J; Aguiar, F C; Almeida, S F P; Ferreira, J; Ferreira, M T; Elias, C; Serra, S R Q; Buffagni, A; Cambra, J; Chauvin, C; Delmas, F; Dörflinger, G; Erba, S; Flor, N; Ferréol, M; Germ, M; Mancini, L; Manolaki, P; Marcheggiani, S; Minciardi, M R; Munné, A; Papastergiadou, E; Prat, N; Puccinelli, C; Rosebery, J; Sabater, S; Ciadamidaro, S; Tornés, E; Tziortzis, I; Urbanič, G; Vieira, C

2014-04-01

The present report describes a three-step approach that was used to characterize and define thresholds for the Least Disturbed Condition in Mediterranean streams of four different types, regarding organic pollution and nutrients, hydrological and morphological alterations, and land use. For this purpose, a common database composed of national reference sites (929 records) from seven countries, sampled for invertebrates, diatoms and macrophytes was used. The analyses of reference sites showed that small (catchment <100 km(2)) siliceous and non-siliceous streams were mainly affected by channelization, bank alteration and hydropeaking. Medium-sized siliceous rivers were the most affected by stressors: 25-43% of the samples showed at least slight alterations regarding channelization, connectivity, upstream dam influence, hydropeaking and degradation of riparian vegetation. Temporary streams were the least affected by hydromorphological changes, but they were nevertheless affected by alterations in riparian vegetation. There were no major differences between all permanent stream types regarding water quality, but temporary streams showed lower values for oxygenation (DO) and wider ranges for other variables, such as nitrates. A lower threshold value for DO (60%) was determined for this stream type and can be attributed to the streams' natural characteristics. For all other river types, common limits were found for the remaining variables (ammonium, nitrate, phosphate, total P, % of artificial areas, % of intensive and extensive agriculture, % of semi-natural areas in the catchment). These values were then used to select the list of reference sites. The biological communities were characterized, revealing the existence of nine groups of Mediterranean invertebrate communities, six for diatoms and five for macrophytes: each group was characterized by specific indicator taxa that highlighted the differences between groups. Copyright © 2013 Elsevier B.V. All rights reserved.

Native Language Influence in the Segmentation of a Novel Language

ERIC Educational Resources Information Center

Ordin, Mikhail; Nespor, Marina

2016-01-01

A major problem in second language acquisition (SLA) is the segmentation of fluent speech in the target language, i.e., detecting the boundaries of phonological constituents like words and phrases in the speech stream. To this end, among a variety of cues, people extensively use prosody and statistical regularities. We examined the role of pitch,…

Aquatic Plants: Management and Control. Special Circular 222.

ERIC Educational Resources Information Center

Wingard, R. G.; And Others

This publication, produced by the Pennsylvania Cooperative Extension Service, is a non-technical guide to chemical control of aquatic vegetation. The purpose of this circular is to aid the land owner or manager in managing ponds, streams, and other water bodies for desired uses by managing the vegetation in, on, and around the water. Among the…

ENHANCED STREAM WATER QUALITY MODELS QUAL2E AND QUAL2E-UNCAS: DOCUMENTATION AND USER MANUAL

EPA Science Inventory

The manual is a major revision of the original QUAL2E program documentation released in 1985. It includes a description of the recent modifications and improvements to the widely used water quality models QUAL-II and QUAL2E. The enhancements include an extensive capability for un...

Vegetation treatments and hydrologic responses at the Hubbard Brook Experimental Forest, New Hampshire

Treesearch

John L. Campbell; Amey S. Bailey; Christopher Eagar; Mark B. Green; John J. Battles

2013-01-01

By the late 19th and early 20th century, extensive forest harvesting was occurring throughout the United States, often with little regard for natural resources. The effects of logging on the environment were relatively unknown, which contributed to rising environmental concerns. Relationships between forests and stream water yield were of particular interest, because...

Effects of wildfires on riparian restoration sites, [electronic resource

Treesearch

Jonathan W. Long; B. Mae Burnette

2004-01-01

We monitored changes in vegetation and channel morphology along reaches of two perennial streams, Limestone Canyon and East Cedar Creek, on the White Mountain Apache Reservation in Arizona starting in the fall of 1995. Enormous wildfires caused extensive erosion and runoff in the watersheds containing the sites in 2002 and 2003, respectively. All reaches within the...

75 FR 49914 - Commission Information Collection Activities (FERC-511 and FERC-515); Comment Request; Extensions

Federal Register 2010, 2011, 2012, 2013, 2014

2010-08-16

... information. \\5\\ Estimated number of hours an employee works each year = 2080, estimated average annual cost..., along, from, or in any of the streams or other bodies of water over which Congress has jurisdiction... water or water power from any Government dam. FERC-515: The information collected under the requirements...

Flow Sources of The Solar Wind Stream Structieres

NASA Astrophysics Data System (ADS)

Lotova, N. A.; Obridko, V. N.; Vladimirskii, K. V.

The large-scale stream structure of the solar wind flow was studied at the main acceler- ation area of 10 to 40 solar radii from the Sun. Three independent sets of experimental data were used: radio astronomy observations of radio wave scattering on near-solar plasmas (large radio telescopes of the P.N.Lebedev Physical Institute were used); mor- phology of the WLC as revealed by the SOHO optical solar corona observations; solar magnetic field strength and configuration computed using the Wilcox Solar Observa- tory data. Experimental data of 1997-1998 years on the position of the transition, tran- sonic region of the solar wind flow were used as a parameter reflecting the intensity of the solar plasmas acceleration process. Correlation studies of these data combined with the magnetic field strength at the solar corona level revealed several types of the solar wind streams differing in the final result, the velocity at large distances from the Sun. Besides of the well-known flows stemming from the polar coronal holes, high-speed streams were observed arising in lateral areas of the streamer structures in contrast to the main body of the streamers, being a known source of the slow solar wind. The slowest streams arise at areas of mixed magnetic field structure compris- ing both open and closed (loop-like) filed lines. In the white-light corona images this shows extensive areas of bright amorphous luminosity.

Large subglacial lakes in East Antarctica at the onset of fast-flowing ice streams.

PubMed

Bell, Robin E; Studinger, Michael; Shuman, Christopher A; Fahnestock, Mark A; Joughin, Ian

2007-02-22

Water plays a crucial role in ice-sheet stability and the onset of ice streams. Subglacial lake water moves between lakes and rapidly drains, causing catastrophic floods. The exact mechanisms by which subglacial lakes influence ice-sheet dynamics are unknown, however, and large subglacial lakes have not been closely associated with rapidly flowing ice streams. Here we use satellite imagery and ice-surface elevations to identify a region of subglacial lakes, similar in total area to Lake Vostok, at the onset region of the Recovery Glacier ice stream in East Antarctica and predicted by ice-sheet models. We define four lakes through extensive, flat, featureless regions of ice surface bounded by upstream troughs and downstream ridges. Using ice velocities determined using interferometric synthetic aperture radar (InSAR), we find the onset of rapid flow (moving at 20 to 30 m yr(-1)) of the tributaries to the Recovery Glacier ice stream in a 280-km-wide segment at the downslope margins of these four subglacial lakes. We conclude that the subglacial lakes initiate and maintain rapid ice flow through either active modification of the basal thermal regime of the ice sheet by lake accretion or through scouring bedrock channels in periodic drainage events. We suggest that the role of subglacial lakes needs to be considered in ice-sheet mass balance assessments.

Modeling the effects of LID practices on streams health at watershed scale

NASA Astrophysics Data System (ADS)

Shannak, S.; Jaber, F. H.

2013-12-01

Increasing impervious covers due to urbanization will lead to an increase in runoff volumes, and eventually increase flooding. Stream channels adjust by widening and eroding stream bank which would impact downstream property negatively (Chin and Gregory, 2001). Also, urban runoff drains in sediment bank areas in what's known as riparian zones and constricts stream channels (Walsh, 2009). Both physical and chemical factors associated with urbanization such as high peak flows and low water quality further stress aquatic life and contribute to overall biological condition of urban streams (Maxted et al., 1995). While LID practices have been mentioned and studied in literature for stormwater management, they have not been studied in respect to reducing potential impact on stream health. To evaluate the performance and the effectiveness of LID practices at a watershed scale, sustainable detention pond, bioretention, and permeable pavement will be modeled at watershed scale. These measures affect the storm peak flows and base flow patterns over long periods, and there is a need to characterize their effect on stream bank and bed erosion, and aquatic life. These measures will create a linkage between urban watershed development and stream conditions specifically biological health. The first phase of this study is to design and construct LID practices at the Texas A&M AgriLife Research and Extension Center-Dallas, TX to collect field data about the performance of these practices on a smaller scale. The second phase consists of simulating the performance of LID practices on a watershed scale. This simulation presents a long term model (23 years) using SWAT to evaluate the potential impacts of these practices on; potential stream bank and bed erosion, and potential impact on aquatic life in the Blunn Watershed located in Austin, TX. Sub-daily time step model simulations will be developed to simulate the effectiveness of the three LID practices with respect to reducing potential erosion from stream beds and banks by studying annual average excess shear and reducing potential impact on aquatic life by studying rapid changes and variation in flow regimes in urban streams. This study will contribute to develop a methodology that evaluates the impact of hydrological changes that occur due to urban development, on aquatic life, stream bank and bed erosion. This is an ongoing research project and results will be shared and discussed at the conference.

Effects of Concrete Channels on Stream Biogeochemistry, Maryland Coastal Plain

NASA Astrophysics Data System (ADS)

Prestegaard, K. L.; Gilbert, L.; Phemister, K.

2005-05-01

In the 1950's and 60's, extensive networks of cement-lined channels were built in suburban watersheds near Washington, D.C. to convey storm water to downstream locations. These cement-lined stream channels limit interactions between surface and groundwater and they provide sources of alkalinity in Maryland Coastal Plain watersheds that normally have low alkalinity. This project was designed to 1) compare base flow water chemistry in headwater reaches of urban and non-urban streams, and 2) to evaluate downstream changes in water chemistry in channelized urban streams in comparison with non-urban reference streams. During a drought year, headwater streams in both urban and non-urban sites had significant concentrations of Fe(II) that were discharged from groundwater sources and rapidly oxidized by iron-oxidizing bacteria. During a wet year, the concentrations of Fe(II) were higher in headwater urban streams than in the non-urban streams. This suggests that impervious surfaces in headwater urban watersheds prevent the recharge of oxygen-rich waters during storm events, which maintains iron-rich groundwater discharge to the stream. Downstream changes in water chemistry are prominent in cement-lined urban channels because they are associated with distinctive microbial communities. The headwater zones of channelized streams are dominated by iron-ozidizing bacteria, that are replaced downstream by manganese-oxidizing zones, and replaced further downstream by biofilms dominated by photosynthesizing cyanobacteria. The reaches dominated by cyanobacteria exhibit diurnal changes in pH due to uptake of CO2 for photosynthesis. Diurnal changes range from 7.5 to 8.8 in the summer months to 7.0 to 7.5 in the cooler months, indicating both the impact of photosynthesis and the additional source of alkalinity provided by concrete. The dissolved oxygen, pH, and other characteristics of tributaries dominated by cyanobacteria are similar to the water chemistry characteristics observed in much larger urban river channels further downstream. These downstream redox zonations, microbial habitats, and pH characteristics observed in channelized tributaries are very different from non-urban watersheds in the Maryland Coastal Plain, which have pH values less than 7 and do not have the prominent redox zonations and associated microbial habitats. These downstream changes in redox chemistry and pH in urban stream channels have implications for the transport and retention of heavy metals in urban streams.

Groundwater, springs, and stream flow generation in an alpine meadow of a tropical glacierized catchment

NASA Astrophysics Data System (ADS)

Gordon, R.; Lautz, L. K.; McKenzie, J. M.; Mark, B. G.; Chavez, D.

2013-12-01

Melting tropical glaciers supply approximately half of dry season stream discharge in glacierized valleys of the Cordillera Blanca, Peru. The remainder of streamflow originates as groundwater stored in alpine meadows, moraines and talus slopes. A better understanding of the dynamics of alpine groundwater, including sources and contributions to streamflow, is important for making accurate estimates of glacial inputs to the hydrologic budget, and for our ability to make predictions about future water resources as glaciers retreat. Our field study, conducted during the dry season in the Llanganuco valley, focused on a 0.5-km2 alpine meadow complex at 4400 m elevation, which includes talus slopes, terminal moraines, and a debris fan. Two glacial lakes and springs throughout the complex feed a network of stream channels that flow across the meadow (~2 km total length). We combined tracer measurements of stream and spring discharge and groundwater-surface water exchange with synoptic sampling of water isotopic and geochemical composition, in order to characterize and quantify contributions to streamflow from different geomorphic features. Surface water inputs to the stream channels totaled 58 l/s, while the stream gained an additional 57 l/s from groundwater inputs. Water chemistry is primarily controlled by flowpath type (surface/subsurface) and length, as well as bedrock lithology, while stable water isotopic composition appears to be controlled by water source (glacial lake, meadow or deep groundwater). Stream water chemistry is most similar to meadow groundwater springs, but isotopic composition suggests that the majority of stream water, which issues from springs at the meadow/fan interface, is from the same glacial source as the up-gradient lake. Groundwater sampled from piezometers in confined meadow aquifers is unique in both chemistry and isotopic composition, but does not contribute a large percentage of stream water exiting this small meadow, as quantified by discharge measurements and isotopic mixing. However, we expect that as streams flow down through extensive meadows and wetlands in many Cordillera Blanca valleys, meadow groundwater is a more significant contributor to streamflow. Results from this small, high meadow in Llanganuco will be compared to a larger and lower-elevation meadow system in the Quilcayhuanca valley.

Finite element techniques for the Navier-Stokes equations in the primitive variable formulation and the vorticity stream-function formulation

NASA Technical Reports Server (NTRS)

Glaisner, F.; Tezduyar, T. E.

1987-01-01

Finite element procedures for the Navier-Stokes equations in the primitive variable formulation and the vorticity stream-function formulation have been implemented. For both formulations, streamline-upwind/Petrov-Galerkin techniques are used for the discretization of the transport equations. The main problem associated with the vorticity stream-function formulation is the lack of boundary conditions for vorticity at solid surfaces. Here an implicit treatment of the vorticity at no-slip boundaries is incorporated in a predictor-multicorrector time integration scheme. For the primitive variable formulation, mixed finite-element approximations are used. A nine-node element and a four-node + bubble element have been implemented. The latter is shown to exhibit a checkerboard pressure mode and a numerical treatment for this spurious pressure mode is proposed. The two methods are compared from the points of view of simulating internal and external flows and the possibilities of extensions to three dimensions.

Georgia's Stream-Water-Quality Monitoring Network, 2006

USGS Publications Warehouse

Nobles, Patricia L.; ,

2006-01-01

The USGS stream-water-quality monitoring network for Georgia is an aggregation of smaller networks and individual monitoring stations that have been established in cooperation with Federal, State, and local agencies. These networks collectively provide data from 130 sites, 62 of which are monitored continuously in real time using specialized equipment that transmits these data via satellite to a centralized location for processing and storage. These data are made available on the Web in near real time at http://waterdata.usgs.gov/ga/nwis/ Ninety-eight stations are sampled periodically for a more extensive suite of chemical and biological constituents that require laboratory analysis. Both the continuous and the periodic water-quality data are archived and maintained in the USGS National Water Information System and are available to cooperators, water-resource managers, and the public. The map at right shows the USGS stream-water-quality monitoring network for Georgia and major watersheds. The network represents an aggregation of smaller networks and individual monitoring stations that collectively provide data from 130 sites.

Estimation of Critical Gap Based on Raff's Definition

PubMed Central

Guo, Rui-jun; Wang, Xiao-jing; Wang, Wan-xiang

2014-01-01

Critical gap is an important parameter used to calculate the capacity and delay of minor road in gap acceptance theory of unsignalized intersections. At an unsignalized intersection with two one-way traffic flows, it is assumed that two events are independent between vehicles' arrival of major stream and vehicles' arrival of minor stream. The headways of major stream follow M3 distribution. Based on Raff's definition of critical gap, two calculation models are derived, which are named M3 definition model and revised Raff's model. Both models use total rejected coefficient. Different calculation models are compared by simulation and new models are found to be valid. The conclusion reveals that M3 definition model is simple and valid. Revised Raff's model strictly obeys the definition of Raff's critical gap and its application field is more extensive than Raff's model. It can get a more accurate result than the former Raff's model. The M3 definition model and revised Raff's model can derive accordant result. PMID:25574160

Estimation of critical gap based on Raff's definition.

PubMed

Guo, Rui-jun; Wang, Xiao-jing; Wang, Wan-xiang

2014-01-01

Critical gap is an important parameter used to calculate the capacity and delay of minor road in gap acceptance theory of unsignalized intersections. At an unsignalized intersection with two one-way traffic flows, it is assumed that two events are independent between vehicles' arrival of major stream and vehicles' arrival of minor stream. The headways of major stream follow M3 distribution. Based on Raff's definition of critical gap, two calculation models are derived, which are named M3 definition model and revised Raff's model. Both models use total rejected coefficient. Different calculation models are compared by simulation and new models are found to be valid. The conclusion reveals that M3 definition model is simple and valid. Revised Raff's model strictly obeys the definition of Raff's critical gap and its application field is more extensive than Raff's model. It can get a more accurate result than the former Raff's model. The M3 definition model and revised Raff's model can derive accordant result.

Ground-Water Occurrence and Contribution to Streamflow, Northeast Maui, Hawaii

USGS Publications Warehouse

Gingerich, Stephen B.

1999-01-01

The study area lies on the northern flank of the East Maui Volcano (Haleakala) and covers about 129 square miles between the drainage basins of Maliko Gulch to the west and Makapipi Stream to the east. About 989 million gallons per day of rainfall and 176 million gallons per day of fog drip reaches the study area and about 529 million gallons per day enters the ground-water system as recharge. Average annual ground-water withdrawal from wells totals only about 3 million gallons per day; proposed (as of 1998) additional withdrawals total about 18 million gallons per day. Additionally, tunnels and ditches of an extensive irrigation network directly intercept at least 10 million gallons per day of ground water. The total amount of average annual streamflow in gaged stream subbasins upstream of 1,300 feet altitude is about 255 million gallons per day and the total amount of average annual base flow is about 62 million gallons per day. Six major surface-water diversion systems in the study area have diverted an average of 163 million gallons per day of streamflow (including nearly all base flow of diverted streams) for irrigation and domestic supply in central Maui during 1925-97. Fresh ground water is found in two main forms. West of Keanae Valley, ground-water flow appears to be dominated by a variably saturated system. A saturated zone in the uppermost rock unit, the Kula Volcanics, is separated from a freshwater lens near sea level by an unsaturated zone in the underlying Honomanu Basalt. East of Keanae Valley, the ground-water system appears to be fully saturated above sea level to altitudes greater than 2,000 feet. The total average annual streamflow of gaged streams west of Keanae Valley is about 140 million gallons per day at 1,200 feet to 1,300 feet altitude. It is not possible to estimate the total average annual streamflow at the coast. All of the base flow measured in the study area west of Keanae Valley represents ground-water discharge from the high-elevation saturated zone. Total average daily ground-water discharge from the high-elevation saturated zone upstream of 1,200 feet altitude is greater than 38 million gallons per day, all of which is eventually removed from the streams by surface-water diversion systems. Perennial streamflow has been measured at altitudes greater than 3,000 feet in several of the streams. Discharge from the high-elevation saturated zone is persistent even during periods of little rainfall. The total average annual streamflow of the gaged streams east of Keanae Valley is about 109 million gallons per day at about 1,300 feet altitude. It is not possible to estimate the total average annual streamflow at the coast nor at higher altitudes. All of the base flow measured east of Keanae Valley represents ground-water discharge from the vertically extensive freshwater-lens system. Total average daily ground-water discharge to gaged streams upstream of 1,200 feet altitude is about 27 million gallons per day. About 19 million gallons per day of ground water discharges through the Kula and Hana Volcanics between about 500 feet and 1,300 feet altitude in the gaged stream sub-basins. About 13 million gallons per day of this discharge is in Hanawi Stream. The total ground-water discharge above 500 feet altitude in this part of the study area is greater than 56 million gallons per day.

A simulator tool set for evaluating HEVC/SHVC streaming

NASA Astrophysics Data System (ADS)

Al Hadhrami, Tawfik; Nightingale, James; Wang, Qi; Grecos, Christos; Kehtarnavaz, Nasser

2015-02-01

Video streaming and other multimedia applications account for an ever increasing proportion of all network traffic. The recent adoption of High Efficiency Video Coding (HEVC) as the H.265 standard provides many opportunities for new and improved services multimedia services and applications in the consumer domain. Since the delivery of version one of H.265, the Joint Collaborative Team on Video Coding have been working towards standardisation of a scalable extension (SHVC) to the H.265 standard and a series of range extensions and new profiles. As these enhancements are added to the standard the range of potential applications and research opportunities will expend. For example the use of video is also growing rapidly in other sectors such as safety, security, defence and health with real-time high quality video transmission playing an important role in areas like critical infrastructure monitoring and disaster management. Each of which may benefit from the application of enhanced HEVC/H.265 and SHVC capabilities. The majority of existing research into HEVC/H.265 transmission has focussed on the consumer domain addressing issues such as broadcast transmission and delivery to mobile devices with the lack of freely available tools widely cited as an obstacle to conducting this type of research. In this paper we present a toolset which facilitates the transmission and evaluation of HEVC/H.265 and SHVC encoded video on the popular open source NCTUns simulator. Our toolset provides researchers with a modular, easy to use platform for evaluating video transmission and adaptation proposals on large scale wired, wireless and hybrid architectures. The toolset consists of pre-processing, transmission, SHVC adaptation and post-processing tools to gather and analyse statistics. It has been implemented using HM15 and SHM5, the latest versions of the HEVC and SHVC reference software implementations to ensure that currently adopted proposals for scalable and range extensions to the standard can be investigated. We demonstrate the effectiveness and usability of our toolset by evaluating SHVC streaming and adaptation to meet terminal constraints and network conditions in a range of wired, wireless, and large scale wireless mesh network scenarios, each of which is designed to simulate a realistic environment. Our results are compared to those for H264/SVC, the scalable extension to the existing H.264/AVC advanced video coding standard.

Extending Counter-streaming Motion from an Active Region Filament to a Sunspot Light Bridge

NASA Astrophysics Data System (ADS)

Wang, Haimin; Liu, Rui; Li, Qin; Liu, Chang; Deng, Na; Xu, Yan; Jing, Ju; Wang, Yuming; Cao, Wenda

2018-01-01

We analyze high-resolution observations from the 1.6 m telescope at Big Bear Solar Observatory that cover an active region filament. Counter-streaming motions are clearly observed in the filament. The northern end of the counter-streaming motions extends to a light bridge, forming a spectacular circulation pattern around a sunspot, with clockwise motion in the blue wing and counterclockwise motion in the red wing, as observed in the Hα off-bands. The apparent speed of the flow is around 10–60 km s‑1 in the filament, decreasing to 5–20 km s‑1 in the light bridge. The most intriguing results are the magnetic structure and the counter-streaming motions in the light bridge. Similar to those in the filament, the magnetic fields show a dominant transverse component in the light bridge. However, the filament is located between opposed magnetic polarities, while the light bridge is between strong fields of the same polarity. We analyze the power of oscillations with the image sequences of constructed Dopplergrams, and find that the filament’s counter-streaming motion is due to physical mass motion along fibrils, while the light bridge’s counter-streaming motion is due to oscillation in the direction along the line-of-sight. The oscillation power peaks around 4 minutes. However, the section of the light bridge next to the filament also contains a component of the extension of the filament in combination with the oscillation, indicating that some strands of the filament are extended to and rooted in that part of the light bridge.

Successional colonization of temporary streams: An experimental approach using aquatic insects

NASA Astrophysics Data System (ADS)

Godoy, Bruno Spacek; Queiroz, Luciano Lopes; Lodi, Sara; Nascimento de Jesus, Jhonathan Diego; Oliveira, Leandro Gonçalves

2016-11-01

The metacommunity concept studies the processes that structure communities on local and regional scales. This concept is useful to assess spatial variability. However, temporal patterns (e.g., ecological succession and colonization) are neglected in metacommunity studies, since such patterns require temporally extensive, and hard to execute studies. We used experimental habitats in temporary streams located within the Brazilian Cerrado to evaluate the importance of succession for the aquatic insect metacommunity. Five artificial habitats consisting of wrapped crushed rock were set transversally to the water flow in five streams. The habitats were sampled weekly to assess community composition, and replaced after sampling to identify new potential colonizers. We analyzed the accumulation of new colonizers after each week using a logistic model. We selected pairs of experimental habitats and estimated the Bray-Curtis dissimilarity index to assess the community composition trajectory during the experiment. We used the dissimilarity values in ANOVA tests, identifying the importance of time and space for the community. The number of new taxa stabilized in the third week, and we estimated a weekly increase of 1.61 new taxa in the community after stabilization. The overall pattern was a small change on community composition, but one stream had a higher weekly turnover. Our results showed a relevant influence of time in the initial communities of aquatic insects of temporary streams. However, we must observe the temporal pattern in a spatial context, once different streams have different successional history regarding number of taxa and community turnover. We highlight the importance of aerial dispersal and movement to seek oviposition sites as an important factor in determining colonization patterns.

APRON: A Cellular Processor Array Simulation and Hardware Design Tool

NASA Astrophysics Data System (ADS)

Barr, David R. W.; Dudek, Piotr

2009-12-01

We present a software environment for the efficient simulation of cellular processor arrays (CPAs). This software (APRON) is used to explore algorithms that are designed for massively parallel fine-grained processor arrays, topographic multilayer neural networks, vision chips with SIMD processor arrays, and related architectures. The software uses a highly optimised core combined with a flexible compiler to provide the user with tools for the design of new processor array hardware architectures and the emulation of existing devices. We present performance benchmarks for the software processor array implemented on standard commodity microprocessors. APRON can be configured to use additional processing hardware if necessary and can be used as a complete graphical user interface and development environment for new or existing CPA systems, allowing more users to develop algorithms for CPA systems.

Applications of massively parallel computers in telemetry processing

NASA Technical Reports Server (NTRS)

El-Ghazawi, Tarek A.; Pritchard, Jim; Knoble, Gordon

1994-01-01

Telemetry processing refers to the reconstruction of full resolution raw instrumentation data with artifacts, of space and ground recording and transmission, removed. Being the first processing phase of satellite data, this process is also referred to as level-zero processing. This study is aimed at investigating the use of massively parallel computing technology in providing level-zero processing to spaceflights that adhere to the recommendations of the Consultative Committee on Space Data Systems (CCSDS). The workload characteristics, of level-zero processing, are used to identify processing requirements in high-performance computing systems. An example of level-zero functions on a SIMD MPP, such as the MasPar, is discussed. The requirements in this paper are based in part on the Earth Observing System (EOS) Data and Operation System (EDOS).

Horizontal vectorization of electron repulsion integrals.

PubMed

Pritchard, Benjamin P; Chow, Edmond

2016-10-30

We present an efficient implementation of the Obara-Saika algorithm for the computation of electron repulsion integrals that utilizes vector intrinsics to calculate several primitive integrals concurrently in a SIMD vector. Initial benchmarks display a 2-4 times speedup with AVX instructions over comparable scalar code, depending on the basis set. Speedup over scalar code is found to be sensitive to the level of contraction of the basis set, and is best for (lAlB|lClD) quartets when lD  = 0 or lB=lD=0, which makes such a vectorization scheme particularly suitable for density fitting. The basic Obara-Saika algorithm, how it is vectorized, and the performance bottlenecks are analyzed and discussed. © 2016 Wiley Periodicals, Inc. © 2016 Wiley Periodicals, Inc.

Solving the Cauchy-Riemann equations on parallel computers

NASA Technical Reports Server (NTRS)

Fatoohi, Raad A.; Grosch, Chester E.

1987-01-01

Discussed is the implementation of a single algorithm on three parallel-vector computers. The algorithm is a relaxation scheme for the solution of the Cauchy-Riemann equations; a set of coupled first order partial differential equations. The computers were chosen so as to encompass a variety of architectures. They are: the MPP, and SIMD machine with 16K bit serial processors; FLEX/32, an MIMD machine with 20 processors; and CRAY/2, an MIMD machine with four vector processors. The machine architectures are briefly described. The implementation of the algorithm is discussed in relation to these architectures and measures of the performance on each machine are given. Simple performance models are used to describe the performance. These models highlight the bottlenecks and limiting factors for this algorithm on these architectures. Conclusions are presented.

Mixing enhancement of reacting parallel fuel jets in a supersonic combustor

NASA Technical Reports Server (NTRS)

Drummond, J. P.

1991-01-01

Pursuant to a NASA-Langley development program for a scramjet HST propulsion system entailing the optimization of the scramjet combustor's fuel-air mixing and reaction characteristics, a numerical study has been conducted of the candidate parallel fuel injectors. Attention is given to a method for flow mixing-process and combustion-efficiency enhancement in which a supersonic circular hydrogen jet coflows with a supersonic air stream. When enhanced by a planar oblique shock, the injector configuration exhibited a substantial degree of induced vorticity in the fuel stream which increased mixing and chemical reaction rates, relative to the unshocked configuration. The resulting heat release was effective in breaking down the stable hydrogen vortex pair that had inhibited more extensive fuel-air mixing.

Anatomy of aphasia revisited.

PubMed

Fridriksson, Julius; den Ouden, Dirk-Bart; Hillis, Argye E; Hickok, Gregory; Rorden, Chris; Basilakos, Alexandra; Yourganov, Grigori; Bonilha, Leonardo

2018-01-17

In most cases, aphasia is caused by strokes involving the left hemisphere, with more extensive damage typically being associated with more severe aphasia. The classical model of aphasia commonly adhered to in the Western world is the Wernicke-Lichtheim model. The model has been in existence for over a century, and classification of aphasic symptomatology continues to rely on it. However, far more detailed models of speech and language localization in the brain have been formulated. In this regard, the dual stream model of cortical brain organization proposed by Hickok and Poeppel is particularly influential. Their model describes two processing routes, a dorsal stream and a ventral stream, that roughly support speech production and speech comprehension, respectively, in normal subjects. Despite the strong influence of the dual stream model in current neuropsychological research, there has been relatively limited focus on explaining aphasic symptoms in the context of this model. Given that the dual stream model represents a more nuanced picture of cortical speech and language organization, cortical damage that causes aphasic impairment should map clearly onto the dual processing streams. Here, we present a follow-up study to our previous work that used lesion data to reveal the anatomical boundaries of the dorsal and ventral streams supporting speech and language processing. Specifically, by emphasizing clinical measures, we examine the effect of cortical damage and disconnection involving the dorsal and ventral streams on aphasic impairment. The results reveal that measures of motor speech impairment mostly involve damage to the dorsal stream, whereas measures of impaired speech comprehension are more strongly associated with ventral stream involvement. Equally important, many clinical tests that target behaviours such as naming, speech repetition, or grammatical processing rely on interactions between the two streams. This latter finding explains why patients with seemingly disparate lesion locations often experience similar impairments on given subtests. Namely, these individuals' cortical damage, although dissimilar, affects a broad cortical network that plays a role in carrying out a given speech or language task. The current data suggest this is a more accurate characterization than ascribing specific lesion locations as responsible for specific language deficits.awx363media15705668782001. © The Author(s) (2018). Published by Oxford University Press on behalf of the Guarantors of Brain. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Influence of fire on native and nonnative salmonid populations and habitat in a western Montana basin

Treesearch

Clint M Sestrich; Thomas E. McMahon; Michael K. Young

2011-01-01

Anticipated increases in the frequency and severity of wildfire may threaten the persistence of native salmonid populations in headwater streams in western North America. This study used extensive pre- and postfire data to assess whether wildfire leads to hypothesized declines in native westslope cutthroat trout Oncorhynchus clarkii lewisi and bull trout Salvelinus...

MACROINVERTEBRATE ASSEMBLAGES OF THE ST. CROIX AND WISCONSIN RIVERS: AN INITIAL APPLICATION OF THE LARGE RIVER BIOASSESSMENT PROTOCOL (LR-BP) IN THE MIDWESTERN UNITED STATES

EPA Science Inventory

Since passage of the Clean Water Act, government agencies have made extensive use of biomonitoring protocols to report on the quality of wadeable streams and rivers. Non-wadeable systems have been largely overlooked because of sampling difficulties and a lack of appropriate metho...

BIOASSESSMENT OF WADEABLE STREAMS IN USEPA REGION 8, USING THE EMAP CHEMISTRY INDICATOR, BENTHIC MACROINVERTEBRATE INDICATOR, WATER COLUMN TOXICITY TESTS, AND SEDIMENT TOXICITY TESTS

EPA Science Inventory

Almost 95% of the mineralized portion of the Rocky Mountains are contained in the Southern Rockies Ecoregion. For the past century, extensive mining of metals has occurred in this area. Runoff and drainage from both active and inactive mining sites have contaminated waters and s...

Influences of body size and environmental factors on autumn downstream migration of bull trout in the Boise River, Idaho

Treesearch

Lauri Monnot; Jason B. Dunham; Tammy Hoem; Peter Koetsier

2008-01-01

Many fishes migrate extensively through stream networks, yet patterns are commonly described only in terms of the origin and destination of migration (e.g., between natal and feeding habitats). To better understand patterns of migration in bull trout, Salvelinus confluentus we studied the influences of body size (total length [TL]) and environmental...

The Process of Auditory Distraction: Disrupted Attention and Impaired Recall in a Simulated Lecture Environment

ERIC Educational Resources Information Center

Zeamer, Charlotte; Fox Tree, Jean E.

2013-01-01

Literature on auditory distraction has generally focused on the effects of particular kinds of sounds on attention to target stimuli. In support of extensive previous findings that have demonstrated the special role of language as an auditory distractor, we found that a concurrent speech stream impaired recall of a short lecture, especially for…

Riparian rehabilitation using vegetation patches: field and laboratory investigations linking hydrology, vegetation and geomorphology

NASA Astrophysics Data System (ADS)

Rodriguez, J. F.; Gorrick, S.

2010-12-01

We present results of a riparian revegetation project on an oversized sand stream in eastern Australia. The Widden Brook in New South Wales has undergone extensive widening due to extraordinary floods in the 1950’s and is currently showing some signs of recovery. These include emergence of pool-riffle structure and stabilization of stream width, which are the result of upstream sediment control, riparian revegetation and livestock exclusion. Revegetation of a mild bend was carried out in 2004 using native plants in an arrangement that consisted of three vegetation patches. The same arrangement was tested in a reduced scale model in the laboratory, where extensive measurements of flow, sediment and bed changes provided insight into the links between hydrology, vegetation and geomorphology. Laboratory tests also included runs without vegetation and with a continuous vegetation cover. In terms of bank stability, the patches provided as much protection as the continuous vegetation. Based on the experiments, a series of analytical relationships were developed to help guide the design of vegetation patches focusing on the geomorphic stability of the whole reach instead of concentrating only on the near bank effects.

1. U.S. Route 250 grade separation structure. This reinforced concrete, ...

Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

1. U.S. Route 250 grade separation structure. This reinforced concrete, rigid frame structure was built in 1941. Its relatively flat arch provided maximum useful clearance in a short span and the physics of the design eliminated the need for extensive abutments to contain the thrust of traditional arches, making it ideally suited as a grade separation structure. BLRI designers made extensive use of theses bridges for crossing small streams and creeks, and grade separation structures, ornamenting them with a rustic stone facade. View is of the south-southeast elevation. - Blue Ridge Parkway, Between Shenandoah National Park & Great Smoky Mountains, Asheville, Buncombe County, NC

Possible origin and significance of extension-parallel drainages in Arizona's metamophic core complexes

USGS Publications Warehouse

Spencer, J.E.

2000-01-01

The corrugated form of the Harcuvar, South Mountains, and Catalina metamorphic core complexes in Arizona reflects the shape of the middle Tertiary extensional detachment fault that projects over each complex. Corrugation axes are approximately parallel to the fault-displacement direction and to the footwall mylonitic lineation. The core complexes are locally incised by enigmatic, linear drainages that parallel corrugation axes and the inferred extension direction and are especially conspicuous on the crests of antiformal corrugations. These drainages have been attributed to erosional incision on a freshly denuded, planar, inclined fault ramp followed by folding that elevated and preserved some drainages on the crests of rising antiforms. According to this hypothesis, corrugations were produced by folding after subacrial exposure of detachment-fault foot-walls. An alternative hypothesis, proposed here, is as follows. In a setting where preexisting drainages cross an active normal fault, each fault-slip event will cut each drainage into two segments separated by a freshly denuded fault ramp. The upper and lower drainage segments will remain hydraulically linked after each fault-slip event if the drainage in the hanging-wall block is incised, even if the stream is on the flank of an antiformal corrugation and there is a large component of strike-slip fault movement. Maintenance of hydraulic linkage during sequential fault-slip events will guide the lengthening stream down the fault ramp as the ramp is uncovered, and stream incision will form a progressively lengthening, extension-parallel, linear drainage segment. This mechanism for linear drainage genesis is compatible with corrugations as original irregularities of the detachment fault, and does not require folding after early to middle Miocene footwall exhumations. This is desirable because many drainages are incised into nonmylonitic crystalline footwall rocks that were probably not folded under low-temperature, surface conditions. An alternative hypothesis, that drainages were localized by small fault grooves as footwalls were uncovered, is not supported by analysis of a down-plunge fault projection for the southern Rincon Mountains that shows a linear drainage aligned with the crest of a small antiformal groove on the detachment fault, but this process could have been effective elsewhere. Lineation-parallel drainages now plunge gently southwestward on the southwest ends of antiformal corrugations in the South and Buckskin Mountains, but these drainages must have originally plunged northeastward if they formed by either of the two alternative processes proposed here. Footwall exhumation and incision by northeast-flowing streams was apparently followed by core-complex arching and drainage reversal.

The size distribution of organic carbon in headwater streams in the Amazon basin.

PubMed

de Paula, Joana D'Arc; Luizão, Flávio Jesus; Piedade, Maria Teresa Fernandez

2016-06-01

Despite the strong representativeness of streams in the Amazon basin, their role in the accumulation of coarse particulate organic carbon (CPOC), fine particulate organic carbon (FPOC), and dissolved organic carbon (DOC) in transport, an important energy source in these environments, is poorly known. It is known that the arboreal vegetation in the Amazon basin is influenced by soil fertility and rainfall gradients, but would these gradients promote local differences in organic matter in headwater streams? To answer this question, 14 low-order streams were selected within these gradients along the Amazon basin, with extensions that varied between 4 and 8 km. The efficiency of the transformation of particulate into dissolved carbon fractions was assessed for each stream. The mean monthly benthic organic matter storage ranged between 1.58 and 9.40 t ha(-1) month(-1). In all locations, CPOC was the most abundant fraction in biomass, followed by FPOC and DOC. Rainfall and soil fertility influenced the distribution of the C fraction (p = 0.01), showing differentiated particulate organic carbon (POC) storage and DOC transportation along the basin. Furthermore, the results revealed that carbon quantification at the basin level could be underestimated, ultimately influencing the global carbon calculations for the region. This is especially due to the fact that the majority of studies consider only fine particulate organic matter and dissolved organic matter, which represent less than 50 % of the stored and transported carbon in streambeds.

How low can you go? Impacts of a low-flow disturbance on aquatic insect communities.

PubMed

Walters, Annika W; Post, David M

2011-01-01

The natural hydrology of streams and rivers is being extensively modified by human activities. Water diversion, dam construction, and climate change have the potential to increase the frequency and intensity of low-flow events. Flow is a dominant force structuring stream aquatic insect communities, but the impacts of water diversion are poorly understood. Here we report results of an experimental stream flow diversion designed to test how aquatic insect communities respond to a low-flow disturbance. We diverted 40% to 80% of the water in three replicate streams for three summers, leading to summer flow exceedance probabilities of up to 99.9%. Shifts in habitat availability appeared to be a major driver of aquatic insect community responses. Responses also varied by habitat type: total insect density decreased in riffle habitats, but there was no change in pool habitats. Overall, the total biomass of aquatic insects decreased sharply with lowered flow. Collector-filterers, collector-gatherers, and scrapers were especially susceptible, while predatory insects were more resistant. Despite extremely low flow levels, there was no shift in aquatic insect family richness. The experimental water withdrawal did not increase water temperature or decrease water quality, and some wetted habitat was always maintained, which likely prevented more severe impacts on aquatic insect communities.

Reconstructing Native American Population History

PubMed Central

Reich, David; Patterson, Nick; Campbell, Desmond; Tandon, Arti; Mazieres, Stéphane; Ray, Nicolas; Parra, Maria V.; Rojas, Winston; Duque, Constanza; Mesa, Natalia; García, Luis F.; Triana, Omar; Blair, Silvia; Maestre, Amanda; Dib, Juan C.; Bravi, Claudio M.; Bailliet, Graciela; Corach, Daniel; Hünemeier, Tábita; Bortolini, Maria-Cátira; Salzano, Francisco M.; Petzl-Erler, María Luiza; Acuña-Alonzo, Victor; Aguilar-Salinas, Carlos; Canizales-Quinteros, Samuel; Tusié-Luna, Teresa; Riba, Laura; Rodríguez-Cruz, Maricela; Lopez-Alarcón, Mardia; Coral-Vazquez, Ramón; Canto-Cetina, Thelma; Silva-Zolezzi, Irma; Fernandez-Lopez, Juan Carlos; Contreras, Alejandra V.; Jimenez-Sanchez, Gerardo; Gómez-Vázquez, María José; Molina, Julio; Carracedo, Ángel; Salas, Antonio; Gallo, Carla; Poletti, Giovanni; Witonsky, David B.; Alkorta-Aranburu, Gorka; Sukernik, Rem I.; Osipova, Ludmila; Fedorova, Sardana; Vasquez, René; Villena, Mercedes; Moreau, Claudia; Barrantes, Ramiro; Pauls, David; Excoffier, Laurent; Bedoya, Gabriel; Rothhammer, Francisco; Dugoujon, Jean Michel; Larrouy, Georges; Klitz, William; Labuda, Damian; Kidd, Judith; Kidd, Kenneth; Rienzo, Anna Di; Freimer, Nelson B.; Price, Alkes L.; Ruiz-Linares, Andrés

2013-01-01

The peopling of the Americas has been the subject of extensive genetic, archaeological and linguistic research; however, central questions remain unresolved1–5. One contentious issue is whether the settlement occurred via a single6–8 or multiple streams of migration from Siberia9–15. The pattern of dispersals within the Americas is also poorly understood. To address these questions at higher resolution than was previously possible, we assembled data from 52 Native American and 17 Siberian groups genotyped at 364,470 single nucleotide polymorphisms. We show that Native Americans descend from at least three streams of Asian gene flow. Most descend entirely from a single ancestral population that we call “First American”. However, speakers of Eskimo-Aleut languages from the Arctic inherit almost half their ancestry from a second stream of Asian gene flow, and the Na-Dene-speaking Chipewyan from Canada inherit roughly one-tenth of their ancestry from a third stream. We show that the initial peopling followed a southward expansion facilitated by the coast, with sequential population splits and little gene flow after divergence, especially in South America. A major exception is in Chibchan-speakers on both sides of the Panama Isthmus, who have ancestry from both North and South America. PMID:22801491

Hydrologic response of streams restored with check dams in the Chiricahua Mountains, Arizona

USGS Publications Warehouse

Norman, Laura M.; Brinkerhoff, Fletcher C.; Gwilliam, Evan; Guertin, D. Phillip; Callegary, James B.; Goodrich, David C.; Nagler, Pamela L.; Gray, Floyd

2016-01-01

In this study, hydrological processes are evaluated to determine impacts of stream restoration in the West Turkey Creek, Chiricahua Mountains, southeast Arizona, during a summer-monsoon season (June–October of 2013). A paired-watershed approach was used to analyze the effectiveness of check dams to mitigate high flows and impact long-term maintenance of hydrologic function. One watershed had been extensively altered by the installation of numerous small check dams over the past 30 years, and the other was untreated (control). We modified and installed a new stream-gauging mechanism developed for remote areas, to compare the water balance and calculate rainfall–runoff ratios. Results show that even 30 years after installation, most of the check dams were still functional. The watershed treated with check dams has a lower runoff response to precipitation compared with the untreated, most notably in measurements of peak flow. Concerns that downstream flows would be reduced in the treated watershed, due to storage of water behind upstream check dams, were not realized; instead, flow volumes were actually higher overall in the treated stream, even though peak flows were dampened. We surmise that check dams are a useful management tool for reducing flow velocities associated with erosion and degradation and posit they can increase baseflow in aridlands.

Land-based salmon aquacultures change the quality and bacterial degradation of riverine dissolved organic matter

PubMed Central

Kamjunke, Norbert; Nimptsch, Jorge; Harir, Mourad; Herzsprung, Peter; Schmitt-Kopplin, Philippe; Neu, Thomas R.; Graeber, Daniel; Osorio, Sebastian; Valenzuela, Jose; Carlos Reyes, Juan; Woelfl, Stefan; Hertkorn, Norbert

2017-01-01

Aquacultures are of great economic importance worldwide but pollute pristine headwater streams, lakes, and estuaries. However, there are no in-depth studies of the consequences of aquacultures on dissolved organic matter (DOM) composition and structure. We performed a detailed molecular level characterization of aquaculture DOM quality and its bacterial degradation using four salmon aquacultures in Chile. Fluorescence measurements, ultrahigh-resolution mass spectrometry, and nuclear magnetic resonance spectroscopy of the DOM revealed specific and extensive molecular alterations caused by aquacultures. Aquacultures released large quantities of readily bioavailable metabolites (primarily carbohydrates and peptides/proteins, and lipids), causing the organic matter downstream of all the investigated aquacultures to deviate strongly from the highly processed, polydisperse and molecularly heterogeneous DOM found in pristine rivers. However, the upstream individual catchment DOM signatures remained distinguishable at the downstream sites. The benthic algal biovolume decreased and the bacterial biovolume and production increased downstream of the aquacultures, shifting stream ecosystems to a more heterotrophic state and thus impairing the ecosystem health. The bacterial DOM degradation rates explain the attenuation of aquaculture DOM within the subsequent stream reaches. This knowledge may aid the development of improved waste processing facilities and may help to define emission thresholds to protect sensitive stream ecosystems. PMID:28256613

Performance Modeling in CUDA Streams - A Means for High-Throughput Data Processing

PubMed Central

Li, Hao; Yu, Di; Kumar, Anand; Tu, Yi-Cheng

2015-01-01

Push-based database management system (DBMS) is a new type of data processing software that streams large volume of data to concurrent query operators. The high data rate of such systems requires large computing power provided by the query engine. In our previous work, we built a push-based DBMS named G-SDMS to harness the unrivaled computational capabilities of modern GPUs. A major design goal of G-SDMS is to support concurrent processing of heterogenous query processing operations and enable resource allocation among such operations. Understanding the performance of operations as a result of resource consumption is thus a premise in the design of G-SDMS. With NVIDIA’s CUDA framework as the system implementation platform, we present our recent work on performance modeling of CUDA kernels running concurrently under a runtime mechanism named CUDA stream. Specifically, we explore the connection between performance and resource occupancy of compute-bound kernels and develop a model that can predict the performance of such kernels. Furthermore, we provide an in-depth anatomy of the CUDA stream mechanism and summarize the main kernel scheduling disciplines in it. Our models and derived scheduling disciplines are verified by extensive experiments using synthetic and real-world CUDA kernels. PMID:26566545

Physical habitat and water quality correlates of crayfish distributions in a mined watershed

USGS Publications Warehouse

Welsh, Stuart A.; Loughman, Zachary J.

2014-01-01

In mined watersheds, water quality alters aquatic faunas, but few studies have focused on associations between stream habitat and crayfish distributions. We examined associations of water quality and physical habitat quality on presence/absence of six crayfish species in the upper Kanawha River drainage of southern West Virginia, USA, a region with a long history of surface and mountaintop removal mining of coal. Data supported an association of physical habitat quality with the presence of four species (Cambarus carinirostris, Cambarus robustus, Cambarus cf. sciotensis, and Orconectes sanbornii). Cambarus bartonii cavatus and the non-native Orconectes virilis were associated with lower quality physical habitat than that of the other four species. Relative to other species, C. b. cavatus was associated with the lowest conductivity values, whereas O. virilis was associated with the highest conductivity values. Secondary and tertiary burrowers were generally associated with relatively high-quality physical habitat. However, C. b. cavatus, a crayfish known to burrow extensively in headwater streams, was associated with the lowest quality physical habitat. Physical habitat quality was generally supported over stream conductivity as a variable influencing crayfish distributions. Our data demonstrate the importance of stream habitat quality when assessing crayfish assemblages within mined watersheds.

Land-based salmon aquacultures change the quality and bacterial degradation of riverine dissolved organic matter

NASA Astrophysics Data System (ADS)

Kamjunke, Norbert; Nimptsch, Jorge; Harir, Mourad; Herzsprung, Peter; Schmitt-Kopplin, Philippe; Neu, Thomas R.; Graeber, Daniel; Osorio, Sebastian; Valenzuela, Jose; Carlos Reyes, Juan; Woelfl, Stefan; Hertkorn, Norbert

2017-03-01

Aquacultures are of great economic importance worldwide but pollute pristine headwater streams, lakes, and estuaries. However, there are no in-depth studies of the consequences of aquacultures on dissolved organic matter (DOM) composition and structure. We performed a detailed molecular level characterization of aquaculture DOM quality and its bacterial degradation using four salmon aquacultures in Chile. Fluorescence measurements, ultrahigh-resolution mass spectrometry, and nuclear magnetic resonance spectroscopy of the DOM revealed specific and extensive molecular alterations caused by aquacultures. Aquacultures released large quantities of readily bioavailable metabolites (primarily carbohydrates and peptides/proteins, and lipids), causing the organic matter downstream of all the investigated aquacultures to deviate strongly from the highly processed, polydisperse and molecularly heterogeneous DOM found in pristine rivers. However, the upstream individual catchment DOM signatures remained distinguishable at the downstream sites. The benthic algal biovolume decreased and the bacterial biovolume and production increased downstream of the aquacultures, shifting stream ecosystems to a more heterotrophic state and thus impairing the ecosystem health. The bacterial DOM degradation rates explain the attenuation of aquaculture DOM within the subsequent stream reaches. This knowledge may aid the development of improved waste processing facilities and may help to define emission thresholds to protect sensitive stream ecosystems.

Socio-economic inequalities in the incidence of four common cancers: a population-based registry study.

PubMed

Tweed, E J; Allardice, G M; McLoone, P; Morrison, D S

2018-01-01

To investigate the relationship between socio-economic circumstances and cancer incidence in Scotland in recent years. Population-based study using cancer registry data. Data on incident cases of colorectal, lung, female breast, and prostate cancer diagnosed between 2001 and 2012 were obtained from a population-based cancer registry covering a population of approximately 2.5 million people in the West of Scotland. Socio-economic circumstances were assessed based on postcode of residence at diagnosis, using the Scottish Index of Multiple Deprivation (SIMD). For each cancer, crude and age-standardised incidence rates were calculated by quintile of SIMD score, and the number of excess cases associated with socio-economic deprivation was estimated. 93,866 cases met inclusion criteria, comprising 21,114 colorectal, 31,761 lung, 23,757 female breast, and 15,314 prostate cancers. Between 2001 and 2006, there was no consistent association between socio-economic circumstances and colorectal cancer incidence, but 2006-2012 saw an emerging deprivation gradient in both sexes. The incidence rate ratio (IRR) for colorectal cancer between most deprived and least deprived increased from 1.03 (95% confidence interval [CI] 0.91-1.16) to 1.24 (95% CI 1.11-1.39) during the study period. The incidence of lung cancer showed the strongest relationship with socio-economic circumstances, with inequalities widening across the study period among women from IRR 2.66 (95% CI 2.33-3.05) to 2.91 (95% CI 2.54-3.33) in 2001-03 and 2010-12, respectively. Breast and prostate cancer showed an inverse relationship with socio-economic circumstances, with lower incidence among people living in more deprived areas. Significant socio-economic inequalities remain in cancer incidence in the West of Scotland, and in some cases are increasing. In particular, this study has identified an emerging, previously unreported, socio-economic gradient in colorectal cancer incidence among women as well as men. Actions to prevent, mitigate, and undo health inequalities should be a public health priority. Copyright © 2017 The Authors. Published by Elsevier Ltd.. All rights reserved.

Streamflow record extension using power transformations and application to sediment transport

NASA Astrophysics Data System (ADS)

Moog, Douglas B.; Whiting, Peter J.; Thomas, Robert B.

1999-01-01

To obtain a representative set of flow rates for a stream, it is often desirable to fill in missing data or extend measurements to a longer time period by correlation to a nearby gage with a longer record. Linear least squares regression of the logarithms of the flows is a traditional and still common technique. However, its purpose is to generate optimal estimates of each day's discharge, rather than the population of discharges, for which it tends to underestimate variance. Maintenance-of-variance-extension (MOVE) equations [Hirsch, 1982] were developed to correct this bias. This study replaces the logarithmic transformation by the more general Box-Cox scaled power transformation, generating a more linear, constant-variance relationship for the MOVE extension. Combining the Box-Cox transformation with the MOVE extension is shown to improve accuracy in estimating order statistics of flow rate, particularly for the nonextreme discharges which generally govern cumulative transport over time. This advantage is illustrated by prediction of cumulative fractions of total bed load transport.

The H.264/AVC advanced video coding standard: overview and introduction to the fidelity range extensions

NASA Astrophysics Data System (ADS)

Sullivan, Gary J.; Topiwala, Pankaj N.; Luthra, Ajay

2004-11-01

H.264/MPEG-4 AVC is the latest international video coding standard. It was jointly developed by the Video Coding Experts Group (VCEG) of the ITU-T and the Moving Picture Experts Group (MPEG) of ISO/IEC. It uses state-of-the-art coding tools and provides enhanced coding efficiency for a wide range of applications, including video telephony, video conferencing, TV, storage (DVD and/or hard disk based, especially high-definition DVD), streaming video, digital video authoring, digital cinema, and many others. The work on a new set of extensions to this standard has recently been completed. These extensions, known as the Fidelity Range Extensions (FRExt), provide a number of enhanced capabilities relative to the base specification as approved in the Spring of 2003. In this paper, an overview of this standard is provided, including the highlights of the capabilities of the new FRExt features. Some comparisons with the existing MPEG-2 and MPEG-4 Part 2 standards are also provided.

Assessment of pathogen levels in stream water column and bed sediment of Merced River Watershed in California

NASA Astrophysics Data System (ADS)

Vaddella, V. K.; Pandey, P.; Biswas, S.; Lewis, D. J.

2014-12-01

Mitigating pathogen levels in surface water is crucial for protecting public health. According to the U.S. Environmental Protection Agency (US EPA), approximately 480,000 km of rivers/streams are contaminated in the U.S., and a major cause of contamination is elevated levels of pathogen/pathogen indicator. Many of past studies showed considerably higher pathogen levels in sediment bed than that of the stream water column in rivers. In order to improve the understanding of pathogen levels in rivers in California, we carried out an extensive pathogen monitoring study in four different watersheds (Bear Creek, Ingalsbe, Maxwell, and Yosemite watersheds) of Merced River. Stream water and streambed sediment samples were collected from 17 locations. Pathogen levels (E. coli O157:H7, Salmonella spp., and Listeria monocytogenes) were enumerated in streambed sediment and water column. In addition, the impacts of heat stress on pathogen survival were assessed by inoculating pathogens into the water and sediment samples for understanding the pathogen survival in stream water column and streambed sediment. The pathogen enumeration (in water column and sediment bed) results indicated that the E. coli O157:H7, Salmonella spp. and Listeria monocytogenes levels were non-detectable in the water column and streambed sediment. The results of heat stress (50◦ C for 180 minutes) test indicated a pathogen decay at one order of magnitude (108 cfu/ml to 107 cfu/ml). Nonetheless, higher pathogen levels (1.13 × 107 cfu/ml) after the heat stress study showed potential pathogen survival at higher temperature. Preliminary results of this study would help in understanding the impacts of elevated temperature on pathogen in stream environment. Further studies are required to test the long-term heat-stress impacts on pathogen survival.

Techniques for simulating flood hydrographs and estimating flood volumes for ungaged basins in east and west Tennessee

USGS Publications Warehouse

Gamble, C.R.

1989-01-01

A dimensionless hydrograph developed for a variety of basin conditions in Georgia was tested for its applicability to streams in East and West Tennessee by comparing it to a similar dimensionless hydrograph developed for streams in East and West Tennessee. Hydrographs of observed discharge at 83 streams in East Tennessee and 38 in West Tennessee were used in the study. Statistical analyses were performed by comparing simulated (or computed) hydrographs, derived by application of the Georgia dimensionless hydrograph, and dimensionless hydrographs developed from Tennessee data, with the observed hydrographs at 50 and 75% of their peak-flow widths. Results of the tests indicate that the Georgia dimensionless hydrography is virtually the same as the one developed for streams in East Tennessee, but that it is different from the dimensionless hydrograph developed for streams in West Tennessee. Because of the extensive testing of the Georgia dimensionless hydrograph, it was determined to be applicable for East Tennessee, whereas the dimensionless hydrograph developed from data on streams in West Tennessee was determined to be applicable in West Tennessee. As part of the dimensionless hydrograph development, an average lagtime in hours for each study basin, and the volume in inches of flood runoff for each flood event were computed. By use of multiple-regression analysis, equations were developed that relate basin lagtime to drainage area size, basin length, and percent impervious area. Similarly, flood volumes were related to drainage area size, peak discharge, and basin lagtime. These equations, along with the appropriate dimensionless hydrograph, can be used to estimate a typical (average) flood hydrograph and volume for recurrence-intervals up to 100 years at any ungaged site draining less than 50 sq mi in East and West Tennessee. (USGS)

A field comparison of multiple techniques to quantify groundwater - surface-water interactions

USGS Publications Warehouse

González-Pinzón, Ricardo; Ward, Adam S; Hatch, Christine E; Wlostowski, Adam N; Singha, Kamini; Gooseff, Michael N.; Haggerty, Roy; Harvey, Judson; Cirpka, Olaf A; Brock, James T

2015-01-01

Groundwater–surface-water (GW-SW) interactions in streams are difficult to quantify because of heterogeneity in hydraulic and reactive processes across a range of spatial and temporal scales. The challenge of quantifying these interactions has led to the development of several techniques, from centimeter-scale probes to whole-system tracers, including chemical, thermal, and electrical methods. We co-applied conservative and smart reactive solute-tracer tests, measurement of hydraulic heads, distributed temperature sensing, vertical profiles of solute tracer and temperature in the stream bed, and electrical resistivity imaging in a 450-m reach of a 3rd-order stream. GW-SW interactions were not spatially expansive, but were high in flux through a shallow hyporheic zone surrounding the reach. NaCl and resazurin tracers suggested different surface–subsurface exchange patterns in the upper ⅔ and lower ⅓ of the reach. Subsurface sampling of tracers and vertical thermal profiles quantified relatively high fluxes through a 10- to 20-cm deep hyporheic zone with chemical reactivity of the resazurin tracer indicated at 3-, 6-, and 9-cm sampling depths. Monitoring of hydraulic gradients along transects with MINIPOINT streambed samplers starting ∼40 m from the stream indicated that groundwater discharge prevented development of a larger hyporheic zone, which progressively decreased from the stream thalweg toward the banks. Distributed temperature sensing did not detect extensive inflow of ground water to the stream, and electrical resistivity imaging showed limited large-scale hyporheic exchange. We recommend choosing technique(s) based on: 1) clear definition of the questions to be addressed (physical, biological, or chemical processes), 2) explicit identification of the spatial and temporal scales to be covered and those required to provide an appropriate context for interpretation, and 3) maximizing generation of mechanistic understanding and reducing costs of implementing multiple techniques through collaborative research.

Analytical modeling of flash-back phenomena. [premixed/prevaporized combustion system

NASA Technical Reports Server (NTRS)

Feng, C. C.

1979-01-01

To understand the flame flash-back phenomena more extensively, an analytical model was formed and a numerical program was written and tested to solve the set of differential equations describing the model. Results show that under a given set of conditions flame propagates in the boundary layer on a flat plate when the free stream is at or below 1.8 m/s.

A Longitudinal Examination of the Effects of Computer Self-Efficacy Growth on Performance during Technology Training

ERIC Educational Resources Information Center

Downey, James P.; Kher, Hemant V.

2015-01-01

Technology training in the classroom is critical in preparing students for upper level classes as well as professional careers, especially in fields such as technology. One of the key enablers to this process is computer self-efficacy (CSE), which has an extensive stream of empirical research. Despite this, one of the missing pieces is how CSE…

Intensive genetic assessment of the mating system and reproductive success in a semi-closed population of the mottled sculpin, Cottus bairdi

Treesearch

Anthony C. Fiumera; Brady A. Porter; Gary D. Grossman; John C. Avise

2002-01-01

Most genetic surveys of parentage in nature sample only a small fraction of the breeding population. Here we apply micro satellite markers to deduce the genetic mating system and assess the reproductive success of females and males in an extensively collected, semiclosed stream population of the mottled sculpin fish, Cottus bairdi. In this species,...

Salmonid Communities in the South Fork of Caspar Creek, 1967 to 1969 and 1993 to 2003

Treesearch

Bradley E. Valentine; Richard A. Macedo; Tracie Hughes

2007-01-01

Demand for wood products and advances in logging technology post-World War II resulted in timber harvesting that extensively modified streams on the North Coast of California. To assess the resulting impacts to salmonid populations, the Department of Fish and Game conducted studies at widely spaced sites throughout the redwood region during the 1960s. In order to...

Long-term nitrogen dynamics of Coweeta forested watersheds in the southeastern United States of America

Treesearch

Wayne T. Swank; James M. Vose

2001-01-01

We analyzed long-term (23 years) data of inorganic N deposition and loss for an extensive network of mature mixed hardwood covered watersheds in the southern Appalachians of North Carolina to assess trends and dynamics of N in baseline ecosystems. We also assessed watershed N saturation in the context of altered N cycles and stream inorganic N responses associated with...

31 flavors to 50 shades of grey: battling Phytophthoras in native habitats managed by the Santa Clara Valley Water District

Treesearch

Janet Hillman; Tedmund J. Swiecki; Elizabeth A. Bernhardt; Heather K. Mehl; Tyler B. Bourret; David Rizzo

2017-01-01

The Santa Clara Valley Water District (District) is a wholesale water supplier for 1.8 million people in Santa Clara County, California. Capital, water utility, and stream maintenance projects result in extensive, long-term mitigation requirements in riparian, wetland, and upland habitats throughout the county. In 2014, several restoration sites on the valley floor and...

DOE Office of Scientific and Technical Information (OSTI.GOV)

Dutta, Ranu, E-mail: ranu.dutta16@gmail.com; NanoeRA Medicare Private Limited, Uttar Pradesh; Pandey, Avinash C.

Gadolinium chelates and gadolinium based inorganic nanoparticles have been extensively studied, because of the high magnetic moment of gadolinium. Here, metallic gadolinium nanocongregates have been developed. Upon injecting these nanoparticles in the mice, they initially circulate in the blood stream and are localized at the cancer site, which could be visualized upon application of magnetic field hence acting as small magnetic nanosensors searching for even small cancers, detecting cancers at a very early stage.

The effects of migration on the establishment of networks: caste disintegration and reformation among the Indians of Fiji.

PubMed

Grieco, E M

1998-01-01

"This article focuses on how migration auspices affect the formation of migrant networks and ethnic communities. Using ethnographic data and migration histories to focus on caste ¿reformation' in the subcommunities of the Indians of Fiji, the ability to reestablish and maintain subcaste group ¿extensions' in Fiji is shown as directly related to the migration auspices that originally established the community. By determining the characteristics of migrants, the reason for migrating, and the magnitude and duration of migration streams, migration auspices define a migration type. This migration type affects the strength and density of social ties present in migration streams. It also affects the strength and density of network ties that members of a migrant community can establish in a receiving society." excerpt

National water summary 1983: Hydrologic events and issues

USGS Publications Warehouse

,

1984-01-01

The United States as a Nation possesses abundant water resources and has developed and used those resources extensively. The national renewable supply of water is about 1,400 billion gallons per day (for the conterminous 48 States). Approximately 380 billion gallons per day of freshwater is withdrawn for use by the Nation's homes, farms, and industries, and about 280 billion gallons per day is returned to streams. Although a large percentage of the Nation's waste is carried in this return flow, the quality of water in streams has improved in many respects as a result of the pollution-control pro- grams of recent years. However, much remains to be learned about water quality particularly the extent of contamination by synthetic organic chemicals and heavy metals, and the effects of these contaminants on human health.

Is the 'great attractor' a loop of cosmic string?

NASA Astrophysics Data System (ADS)

Hoffman, Y.; Zurek, W. H.

1988-05-01

Recent measurements of galaxy velocities suggest that the observed large-scale streaming may be attributed to a massive "attractor". The authors explore the idea that the streaming was induced by a large, moving loop of cosmic string. A stationary loop induces a velocity field that falls off as r-1, where r is the distance from the loop. This is somewhat modified by the motion of the loop, but the r-1 profile still persists in much of the wake of the string. The standard inflationary models of cold or hot dark matter predict, on the other hand, a velocity that should fall off as r-3 away from the density peak. Extension of this model to the Local Supercluster allows one to understand its Virgocentric velocity field of r-1.

Age-Related Changes in the Ability to Switch between Temporal and Spatial Attention.

PubMed

Callaghan, Eleanor; Holland, Carol; Kessler, Klaus

2017-01-01

Background : Identifying age-related changes in cognition that contribute towards reduced driving performance is important for the development of interventions to improve older adults' driving and prolong the time that they can continue to drive. While driving, one is often required to switch from attending to events changing in time, to distribute attention spatially. Although there is extensive research into both spatial attention and temporal attention and how these change with age, the literature on switching between these modalities of attention is limited within any age group. Methods : Age groups (21-30, 40-49, 50-59, 60-69 and 70+ years) were compared on their ability to switch between detecting a target in a rapid serial visual presentation (RSVP) stream and detecting a target in a visual search display. To manipulate the cost of switching, the target in the RSVP stream was either the first item in the stream (Target 1st), towards the end of the stream (Target Mid), or absent from the stream (Distractor Only). Visual search response times and accuracy were recorded. Target 1st trials behaved as no-switch trials, as attending to the remaining stream was not necessary. Target Mid and Distractor Only trials behaved as switch trials, as attending to the stream to the end was required. Results : Visual search response times (RTs) were longer on "Target Mid" and "Distractor Only" trials in comparison to "Target 1st" trials, reflecting switch-costs. Larger switch-costs were found in both the 40-49 and 60-69 years group in comparison to the 21-30 years group when switching from the Target Mid condition. Discussion : Findings warrant further exploration as to whether there are age-related changes in the ability to switch between these modalities of attention while driving. If older adults display poor performance when switching between temporal and spatial attention while driving, then the development of an intervention to preserve and improve this ability would be beneficial.

Study of Basin Recession Characteristics and Groundwater Storage Properties

NASA Astrophysics Data System (ADS)

Yen-Bo, Chen; Cheng-Haw, Lee

2017-04-01

Stream flow and groundwater storage are freshwater resources that human live on.In this study, we discuss southern area basin recession characteristics and Kao-Ping River basin groundwater storage, and hope to supply reference to Taiwan water resource management. The first part of this study is about recession characteristics. We apply Brutsaert (2008) low flow analysis model to establish two recession data pieces sifting models, including low flow steady period model and normal condition model. Within individual event analysis, group event analysis and southern area basin recession assessment, stream flow and base flow recession characteristics are parameterized. The second part of this study is about groundwater storage. Among main basin in southern Taiwan, there are sufficient stream flow and precipitation gaging station data about Kao-Ping River basin and extensive drainage data, and data about different hydrological characteristics between upstream and downstream area. Therefore, this study focuses on Kao-Ping River basin and accesses groundwater storage properties. Taking residue of groundwater volume in dry season into consideration, we use base flow hydrograph to access periodical property of groundwater storage, in order to establish hydrological period conceptual model. With groundwater storage and precipitation accumulative linearity quantified by hydrological period conceptual model, their periodical changing and alternation trend properties in each drainage areas of Kao-Ping River basin have been estimated. Results of this study showed that the recession time of stream flow is related to initial flow rate of the recession events. The recession time index is lower when the flow is stream flow, not base flow, and the recession time index is higher in low flow steady flow period than in normal recession condition. By applying hydrological period conceptual model, groundwater storage could explicitly be analyzed and compared with precipitation, by only using stream flow data. Keywords: stream flow, base flow, recession characteristics, groundwater storage

Techniques for estimating magnitude and frequency of peak flows for Pennsylvania streams

USGS Publications Warehouse

Stuckey, Marla H.; Reed, Lloyd A.

2000-01-01

Regression equations for estimating the magnitude and frequency of floods on ungaged streams in Pennsylvania with drainage areas less that 2,000 square miles were developed on the basis of peak-flow data collected at 313 streamflow-gaging stations. All streamflow-gaging stations used in the development of the equations had 10 or more years of record and include active and discontinued continuous-record and crest-stage partial-record streamflow-gaging stations. Regional regression equations were developed for flood flows expected every 10, 25, 50, 100, and 500 years by the use of a weighted multiple linear regression model.The State was divided into two regions. The largest region, Region A, encompasses about 78 percent of Pennsylvania. The smaller region, Region B, includes only the northwestern part of the State. Basin characteristics used in the regression equations for Region A are drainage area, percentage of forest cover, percentage of urban development, percentage of basin underlain by carbonate bedrock, and percentage of basin controlled by lakes, swamps, and reservoirs. Basin characteristics used in the regression equations for Region B are drainage area and percentage of basin controlled by lakes, swamps, and reservoirs. The coefficient of determination (R2) values for the five flood-frequency equations for Region A range from 0.93 to 0.82, and for Region B, the range is from 0.96 to 0.89.While the regression equations can be used to predict the magnitude and frequency of peak flows for most streams in the State, they should not be used for streams with drainage areas greater than 2,000 square miles or less than 1.5 square miles, for streams that drain extensively mined areas, or for stream reaches immediately below flood-control reservoirs. In addition, the equations presented for Region B should not be used if the stream drains a basin with more than 5 percent urban development.

Sources and preparation of data for assessing trends in concentrations of pesticides in streams of the United States, 1992–2010

USGS Publications Warehouse

Martin, Jeffrey D.; Eberle, Michael; Nakagaki, Naomi

2011-01-01

This report updates a previously published water-quality dataset of 44 commonly used pesticides and 8 pesticide degradates suitable for a national assessment of trends in pesticide concentrations in streams of the United States. Water-quality samples collected from January 1992 through September 2010 at stream-water sites of the U.S. Geological Survey (USGS) National Water-Quality Assessment (NAWQA) Program and the National Stream Quality Accounting Network (NASQAN) were compiled, reviewed, selected, and prepared for trend analysis. The principal steps in data review for trend analysis were to (1) identify analytical schedule, (2) verify sample-level coding, (3) exclude inappropriate samples or results, (4) review pesticide detections per sample, (5) review high pesticide concentrations, and (6) review the spatial and temporal extent of NAWQA pesticide data and selection of analytical methods for trend analysis. The principal steps in data preparation for trend analysis were to (1) select stream-water sites for trend analysis, (2) round concentrations to a consistent level of precision for the concentration range, (3) identify routine reporting levels used to report nondetections unaffected by matrix interference, (4) reassign the concentration value for routine nondetections to the maximum value of the long-term method detection level (maxLT-MDL), (5) adjust concentrations to compensate for temporal changes in bias of recovery of the gas chromatography/mass spectrometry (GCMS) analytical method, and (6) identify samples considered inappropriate for trend analysis. Samples analyzed at the USGS National Water Quality Laboratory (NWQL) by the GCMS analytical method were the most extensive in time and space and, consequently, were selected for trend analysis. Stream-water sites with 3 or more water years of data with six or more samples per year were selected for pesticide trend analysis. The selection criteria described in the report produced a dataset of 21,988 pesticide samples at 212 stream-water sites. Only 21,144 pesticide samples, however, are considered appropriate for trend analysis.

The importance of context dependency for understanding the effects of low flow events on fish

USGS Publications Warehouse

Walters, Annika W.

2014-01-01

The natural hydrology of streams and rivers has been extensively altered by dam construction, water diversion, and climate change. An increased frequency of low-flow events will affect fish by changing habitat availability, resource availability, and reproductive cues. I reviewed the literature to characterize the approaches taken to assess low-flow events and fish, the main effects of low-flow events on fish, and the associated mechanistic drivers. Most studies are focused on temperate streams and are comparative in nature. Decreased stream flow is associated with decreased survival, growth, and abundance of fish populations and shifts in community composition, but effects are variable. This variability in effects is probably caused by context dependence. I propose 3 main sources of context dependence that drive the variation in fish responses to low-flow events: attributes of the low-flow event, attributes of the habitat, and attributes of the fish. Awareness of these sources of context dependence can help managers interpret and explain data, predict vulnerability of fish communities, and prioritize appropriate management actions.

Temporal and spatial patterns of wetland sedimentation, West Tennessee

USGS Publications Warehouse

Hupp, C.R.; Bazemore, D.E.

1993-01-01

Dendrogeomorphic techniques were used to describe and interpret patterns of sedimentation rates at two forested wetland sites in West Tennessee. Fifty-five sampling stations were established along transects upstream and downstream from bridge structures, and 515 trees were examined for depth of sediment accretion and cored for age determination. Temporal variation in sedimentation rate may be related more to stream channelization and agricultural activity than to bridge and causeway construction. Sedimentation rates have increased substantially in the last 28 years, although channelized streams may have overall lower rates than unchannelized streams. Comparisons of sedimentation rates from deposition over artificial markers (short term) with those determined from tree-ring analysis (long-term) indicate that trends are similar where hydrogeomorphic conditions have not been altered substantially. No tendency for increased sedimentation upstream from bridges was observed. Deposition rates were inversely correlated with elevation and degree of ponding. Downstream deposition of sand splays appears to be related to flow constrictions and may be extensive. Mean overall rates of sedimentation (between 0.24 and 0.28 cm year-1), determined dendrogeomorphically, are comparable with other published rates. ?? 1993.

Hydrologic conditions in the Chicod Creek basin, North Carolina, before and during channel modifications, 1975-81

USGS Publications Warehouse

Watkins, S.A.; Simmons, C.E.

1984-01-01

Beginning in late 1978, stream channels throughout the 60-square mile Chicod Creek basin underwent extensive modification to increase drainage efficiency and reduce flooding potential. Drainage modifications in this Coastal Plain basin, consisting primarily of channel excavation and clearing of channel blockages, were completed in December 1981. The hydrologic condition of the basin before and during modification was determined from observed data. Observed data indicate hydrologic changes occurred in selected basin characteristics. For example, water levels in the surficial aquifer within 250 feet of Juniper Branch declined as much as 0.4 feet during modifications; at distances greater than 250 feet from the stream, ground-water levels did not change. Base flows increased, and suspended-sediment concentrations for high flows were several times greater than before channel modifications. Increases in selected chemical constituent concentrations in stream water during modifications were as follows: calcium, 12 percent; sodium, 18 percent; bicarbonate, 84 percent; and phosphorous, 80 percent. Significant changes were not found in either pesticide concentrations or coliform bacteria counts.

Mission critical cloud computing in a week

NASA Astrophysics Data System (ADS)

George, B.; Shams, K.; Knight, D.; Kinney, J.

NASA's vision is to “ reach for new heights and reveal the unknown so that what we do and learn will benefit all humankind.” While our missions provide large volumes of unique and invaluable data to the scientific community, they also serve to inspire and educate the next generation of engineers and scientists. One critical aspect of “ benefiting all humankind” is to make our missions as visible and accessible as possible to facilitate the transfer of scientific knowledge to the public. The recent successful landing of the Curiosity rover on Mars exemplified this vision: we shared the landing event via live video streaming and web experiences with millions of people around the world. The video stream on Curiosity's website was delivered by a highly scalable stack of computing resources in the cloud to cache and distribute the video stream to our viewers. While this work was done in the context of public outreach, it has extensive implications for the development of mission critical, highly available, and elastic applications in the cloud for a diverse set of use cases across NASA.

The environmental costs of mountaintop mining valley fill operations for aquatic ecosystems of the Central Appalachians.

PubMed

Bernhardt, Emily S; Palmer, Margaret A

2011-03-01

Southern Appalachian forests are recognized as a biodiversity hot spot of global significance, particularly for endemic aquatic salamanders and mussels. The dominant driver of land-cover and land-use change in this region is surface mining, with an ever-increasing proportion occurring as mountaintop mining with valley fill operations (MTVF). In MTVF, seams of coal are exposed using explosives, and the resulting noncoal overburden is pushed into adjacent valleys to facilitate coal extraction. To date, MTVF throughout the Appalachians have converted 1.1 million hectares of forest to surface mines and buried more than 2,000 km of stream channel beneath mining overburden. The impacts of these lost forests and buried streams are propagated throughout the river networks of the region as the resulting sediment and chemical pollutants are transmitted downstream. There is, to date, no evidence to suggest that the extensive chemical and hydrologic alterations of streams by MTVF can be offset or reversed by currently required reclamation and mitigation practices. © 2011 New York Academy of Sciences.

Modeling Alpine Meadow Restoration Techniques and their Effects on Stream Stage Regimes

NASA Astrophysics Data System (ADS)

Moore, C. E.; Lundquist, J. D.; Loheide, S. P.

2010-12-01

Meadow ecosystems in the Sierra Nevada of California often suffer from negative anthropogenic impacts, resulting in stream incision and meadow aridification. Groundwater dependent ecosystems, such as meadows, are especially vulnerable to channel degradation because alteration of stream stage propagates through the groundwater system to affect riparian vegetation. Restoration aimed at raising water table elevation of degraded meadow systems is becoming a salient and viable option as managers recognize the importance of intact headwaters. Stream stage controls groundwater levels and thus, vegetation communities, more dramatically than stream discharge in groundwater dependent ecosystems. Here we use a one dimensional hydraulic model, Hydraulic Engineering Center - River Analysis System (HEC-RAS) to model stream stage along the Tuolumne River, given a time series of stream discharge. Extensive hydroclimatic monitoring since 2001, and groundwater monitoring since 2006, make Tuolumne Meadows, in Yosemite National Park, California a prime location for a validated case study, applicable to other snow dominated basins. In order to determine the most plausible, efficient and effective strategy of restoring impacted meadows, different management scenarios are modeled. HEC-RAS modeling provides critical stream stage boundary conditions for groundwater modeling. Scenarios are chosen that are most effective at increasing stream stage and therefore water table levels. The effectiveness is quantified by modeling how each scenario changes the rating curve for a particular channel. Additionally, surface stage modeling allows decision makers to see under what flow conditions and what time period of the hydrograph is affected by restoration. Quantification of stream stage alterations is key for understanding restoration impacts during the short growing season in alpine meadows. Results of HEC-RAS modeling at Tuolumne Meadows are presented in the following formats to highlight the ways in which this work can be used as a vital tool in management decisions regarding meadow restoration. First, direct changes to the resulting stream stage time series are used to illustrate the magnitude of change among scenarios. Second, synthetic rating curves are compared so that the flow regimes which are highly sensitive to a particular restoration strategy can be readily identified. Third, an empirical probability density function describing the stream stage regime will be provided for each scenario to illustrate the overall effectiveness of each restoration technique in changing water levels. Finally, the probability of exceedance for bankfull stage, the depth associated with the onset of oxygen stress, and the depth associated with the onset of water stress will be presented to demonstrate changes to stream levels that are believed to have ecological significance. Investigation of multiple scenarios allows an informed decision based on sound science that will help achieve restoration goals in the future.

A task-based parallelism and vectorized approach to 3D Method of Characteristics (MOC) reactor simulation for high performance computing architectures

NASA Astrophysics Data System (ADS)

Tramm, John R.; Gunow, Geoffrey; He, Tim; Smith, Kord S.; Forget, Benoit; Siegel, Andrew R.

2016-05-01

In this study we present and analyze a formulation of the 3D Method of Characteristics (MOC) technique applied to the simulation of full core nuclear reactors. Key features of the algorithm include a task-based parallelism model that allows independent MOC tracks to be assigned to threads dynamically, ensuring load balancing, and a wide vectorizable inner loop that takes advantage of modern SIMD computer architectures. The algorithm is implemented in a set of highly optimized proxy applications in order to investigate its performance characteristics on CPU, GPU, and Intel Xeon Phi architectures. Speed, power, and hardware cost efficiencies are compared. Additionally, performance bottlenecks are identified for each architecture in order to determine the prospects for continued scalability of the algorithm on next generation HPC architectures.

The factorization of large composite numbers on the MPP

NASA Technical Reports Server (NTRS)

Mckurdy, Kathy J.; Wunderlich, Marvin C.

1987-01-01

The continued fraction method for factoring large integers (CFRAC) was an ideal algorithm to be implemented on a massively parallel computer such as the Massively Parallel Processor (MPP). After much effort, the first 60 digit number was factored on the MPP using about 6 1/2 hours of array time. Although this result added about 10 digits to the size number that could be factored using CFRAC on a serial machine, it was already badly beaten by the implementation of Davis and Holdridge on the CRAY-1 using the quadratic sieve, an algorithm which is clearly superior to CFRAC for large numbers. An algorithm is illustrated which is ideally suited to the single instruction multiple data (SIMD) massively parallel architecture and some of the modifications which were needed in order to make the parallel implementation effective and efficient are described.

Generating Billion-Edge Scale-Free Networks in Seconds: Performance Study of a Novel GPU-based Preferential Attachment Model

DOE Office of Scientific and Technical Information (OSTI.GOV)

Perumalla, Kalyan S.; Alam, Maksudul

A novel parallel algorithm is presented for generating random scale-free networks using the preferential-attachment model. The algorithm, named cuPPA, is custom-designed for single instruction multiple data (SIMD) style of parallel processing supported by modern processors such as graphical processing units (GPUs). To the best of our knowledge, our algorithm is the first to exploit GPUs, and also the fastest implementation available today, to generate scale free networks using the preferential attachment model. A detailed performance study is presented to understand the scalability and runtime characteristics of the cuPPA algorithm. In one of the best cases, when executed on an NVidiamore » GeForce 1080 GPU, cuPPA generates a scale free network of a billion edges in less than 2 seconds.« less

Temporal BYY encoding, Markovian state spaces, and space dimension determination.

PubMed

Xu, Lei

2004-09-01

As a complementary to those temporal coding approaches of the current major stream, this paper aims at the Markovian state space temporal models from the perspective of the temporal Bayesian Ying-Yang (BYY) learning with both new insights and new results on not only the discrete state featured Hidden Markov model and extensions but also the continuous state featured linear state spaces and extensions, especially with a new learning mechanism that makes selection of the state number or the dimension of state space either automatically during adaptive learning or subsequently after learning via model selection criteria obtained from this mechanism. Experiments are demonstrated to show how the proposed approach works.

Extensive dispersal of Roanoke logperch (Percina rex) inferred from genetic marker data

USGS Publications Warehouse

Roberts, James H.; Angermeier, Paul; Hallerman, Eric M.

2016-01-01

The dispersal ecology of most stream fishes is poorly characterised, complicating conservation efforts for these species. We used microsatellite DNA marker data to characterise dispersal patterns and effective population size (Ne) for a population of Roanoke logperchPercina rex, an endangered darter (Percidae). Juveniles and candidate parents were sampled for 2 years at sites throughout the Roanoke River watershed. Dispersal was inferred via genetic assignment tests (ATs), pedigree reconstruction (PR) and estimation of lifetime dispersal distance under a genetic isolation-by-distance model. Estimates of Ne varied from 105 to 1218 individuals, depending on the estimation method. Based on PR, polygamy was frequent in parents of both sexes, with individuals spawning with an average of 2.4 mates. The sample contained 61 half-sibling pairs, but only one parent–offspring pair and no full-sib pairs, which limited our ability to discriminate natal dispersal of juveniles from breeding dispersal of their parents between spawning events. Nonetheless, all methods indicated extensive dispersal. The AT indicated unrestricted dispersal among sites ≤15 km apart, while siblings inferred by the PR were captured an average of 14 km and up to 55 km apart. Model-based estimates of median lifetime dispersal distance (6–24 km, depending on assumptions) bracketed AT and PR estimates, indicating that widely dispersed individuals do, on average, contribute to gene flow. Extensive dispersal of P. rex suggests that darters and other small benthic stream fishes may be unexpectedly mobile. Monitoring and management activities for such populations should encompass entire watersheds to fully capture population dynamics.

OCCURRENCE OF HIGH-SPEED SOLAR WIND STREAMS OVER THE GRAND MODERN MAXIMUM

DOE Office of Scientific and Technical Information (OSTI.GOV)

Mursula, K.; Holappa, L.; Lukianova, R., E-mail: kalevi.mursula@oulu.fi

2015-03-01

In the declining phase of the solar cycle (SC), when the new-polarity fields of the solar poles are strengthened by the transport of same-signed magnetic flux from lower latitudes, the polar coronal holes expand and form non-axisymmetric extensions toward the solar equator. These extensions enhance the occurrence of high-speed solar wind (SW) streams (HSS) and related co-rotating interaction regions in the low-latitude heliosphere, and cause moderate, recurrent geomagnetic activity (GA) in the near-Earth space. Here, using a novel definition of GA at high (polar cap) latitudes and the longest record of magnetic observations at a polar cap station, we calculatemore » the annually averaged SW speeds as proxies for the effective annual occurrence of HSS over the whole Grand Modern Maximum (GMM) from 1920s onward. We find that a period of high annual speeds (frequent occurrence of HSS) occurs in the declining phase of each of SCs 16-23. For most cycles the HSS activity clearly reaches a maximum in one year, suggesting that typically only one strong activation leading to a coronal hole extension is responsible for the HSS maximum. We find that the most persistent HSS activity occurred in the declining phase of SC 18. This suggests that cycle 19, which marks the sunspot maximum period of the GMM, was preceded by exceptionally strong polar fields during the previous sunspot minimum. This gives interesting support for the validity of solar dynamo theory during this dramatic period of solar magnetism.« less

Vegetation Structure and Function along Ephemeral Streams in the Sonoran Desert

NASA Astrophysics Data System (ADS)

Stromberg, J. C.; Katz, G.

2011-12-01

Despite being the most prevalent stream type in the American Southwest, far less is known about riparian ecosystems associated with ephemeral streams than with perennial streams. Patterns of plant composition and structure reflect complex environmental gradients, including water availability and flood intensity, which in turn are related to position in the stream network. A survey of washes in the Sonoran Desert near Tucson, Arizona showed species composition of small ephemeral washes to be comprised largely of upland species, including large seeded shrubs such as Acacia spp. and Larrea tridentata. Small seeded disturbance adapted xerophytic shrubs, such as Baccharis sarothroides, Hymenoclea monogyra and Isocoma tenuisecta, were common lower in the stream network on the larger streams that have greater scouring forces. Because ephemeral streams have multiple water sources, including deep (sometimes perched) water tables and seasonally variable rain and flood pulses, multiple plant functional types co-exist within a stream segment. Deep-rooted phreatophytes, including Tamarix and nitrogen-fixing Prosopis, are common on many washes. Such plants are able to access not only water, but also pools of nutrients, several meters below ground thereby affecting nutrient levels and soil moisture content in various soil strata. In addition to the perennial plants, many opportunistic and shallow-rooted annual species establish during the bimodal wet seasons. Collectively, wash vegetation serves to stabilize channel substrates and promote accumulation of fine sediments and organic matter. In addition to the many streams that are ephemeral over their length, ephemeral reaches also occupy extensive sections of interrupted perennial rivers. The differences in hydrologic conditions that occur over the length of interrupted perennial rivers influence plant species diversity and variability through time. In one study of three interrupted perennial rivers, patterns of herbaceous species richness varied with temporal scale of analysis, with richness being greater at perennial sites over the short-term but greater at non-perennial sites over the long-term (multiple seasons and years). This latter pattern arose owing to the abundance of light, space, and bare ground at the drier sites, combined with a diverse soil seed bank and periodic supply of seasonal soil moisture sufficient to stimulate establishment of cool-season as well as warm-season annuals. The reduced availability of perennial water sources limits the richness, cover, and competitive dominance of herbaceous perennial species, enabling pronounced diversity response to episodic water pulses in the drier river segments. Thus, non-perennial streams and reaches contribute importantly to river-wide and landscape scale desert riparian diversity, supporting high cumulative richness and distinct composition compared to perennial flow reaches.

Stream Water, Carbon and Total Nitrogen Load Responses to a Simulated Emerald Ash Borer Infestation in Black Ash Dominated Headwater Wetlands

NASA Astrophysics Data System (ADS)

Van Grinsven, M. J.; Shannon, J.; Noh, N. J.; Kane, E. S.; Bolton, N. W.; Davis, J.; Wagenbrenner, J.; Sebestyen, S. D.; Kolka, R.; Pypker, T. G.

2017-12-01

The rapid and extensive expansion of emerald ash borer (EAB) is considered an important ecological and economic disturbance, and will likely affect critical ecosystem services associated with black ash wetlands. It is unknown how EAB-induced disturbance in wetlands dominated with black ash will impact stream water, dissolved organic carbon (DOC) and total dissolved nitrogen (TDN) export dynamics. We hypothesized that loads of water, DOC and TDN exported from black ash wetlands would be elevated following an EAB-induced disturbance. Stream water, DOC and TDN loads exiting two black ash wetlands in headwater watersheds in Michigan were quantified over a four-year period, and were combined with wetland soil temperature and soil decomposition rate monitoring to better understand the biogeochemical implications of an EAB-induced disturbance. After a two-year baseline monitoring period, an EAB disturbance was simulated by felling (ash-cut) all black ash trees with diameters greater than 2.5-cm in one wetland. When compared to the unaltered control, stream water DOC and TDN concentrations exiting the ash-cut wetland were significantly larger by 39% and 38%, respectively during the post-treatment study period. The significantly elevated DOC and TDN concentrations were likely associated with the higher soil temperatures and increased rates of soil decomposition detected in the ash-cut site during the post-treatment period. No significant mean daily stream discharge differences were detected between treatments during the pre-treatment period, however the 0.46 mm d-1 mean daily stream discharge exiting the ash-cut wetland was significantly smaller than the 1.07 mm d-1 exiting the unaltered control during the post-treatment study period. The significantly smaller daily stream discharge in the ash-cut site likely contributed to the fact no significant differences between treatments for either mean daily DOC loads or TDN loads were detected during the post-treatment period, despite the detection of significantly higher DOC and TDN concentrations. Examination of seasonal stream water, DOC and TDN export dynamics revealed the relative magnitudes of EAB-induced impacts were not evenly distributed throughout the year, and these differences have distinct seasonal implications for downstream waterbodies.

Large woody debris input and its influence on channel structure in agricultural lands of Southeast Brazil.

PubMed

de Paula, Felipe Rossetti; Ferraz, Silvio Frosini de Barros; Gerhard, Pedro; Vettorazzi, Carlos Alberto; Ferreira, Anderson

2011-10-01

Riparian forests are important for the structure and functioning of stream ecosystems, providing structural components such as large woody debris (LWD). Changes in these forests will cause modifications in the LWD input to streams, affecting their structure. In order to assess the influence of riparian forests changes in LWD supply, 15 catchments (third and fourth order) with riparian forests at different conservation levels were selected for sampling. In each catchment we quantified the abundance, volume and diameter of LWD in stream channels; the number, area and volume of pools formed by LWD and basal area and tree diameter of riparian forest. We found that riparian forests were at a secondary successional stage with predominantly young trees (diameter at breast height <10 cm) in all studied streams. Results showed that basal area and diameter of riparian forest differed between the stream groups (forested and non-forested), but tree density did not differ between groups. Differences were also observed in LWD abundance, volume, frequency of LWD pools with subunits and area and volume of LWD pools. LWD diameter, LWD that form pools diameter and frequency of LWD pools without subunits did not differ between stream groups. Regression analyses showed that LWD abundance and volume, and frequency of LWD pools (with and without subunits) were positively related with the proportion of riparian forest. LWD diameter was not correlated to riparian tree diameter. The frequency of LWD pools was correlated to the abundance and volume of LWD, but characteristics of these pools (area and volume) were not correlated to the diameter of LWD that formed the pools. These results show that alterations in riparian forest cause modifications in the LWD abundance and volume in the stream channel, affecting mainly the structural complexity of these ecosystems (reduction in the number and structural characteristics of LWD pools). Our results also demonstrate that riparian forest conservation actions must consider not only its extension, but also successional stage to guarantee the quantity and quality of LWD necessary to enable the structuring of stream channels.

Dynamical Evolution of Meteoroid Streams, Developments Over the Last 30 Years

NASA Technical Reports Server (NTRS)

Williams, I. P.

2011-01-01

As soon as reliable methods for observationally determining the heliocentric orbits of meteoroids and hence the mean orbit of a meteoroid stream in the 1950s and 60s, astronomers strived to investigate the evolution of the orbit under the effects of gravitational perturbations from the planets. At first, the limitations in the capabilities of computers, both in terms of speed and memory, placed severe restrictions on what was possible to do. As a consequence, secular perturbation methods, where the perturbations are averaged over one orbit became the norm. The most popular of these is the Halphen- Goryachev method which was used extensively until the early 1980s. The main disadvantage of these methods lies in the fact that close encounter can be missed, however they remain useful for performing very long-term integrations. Direct integration methods determine the effects of the perturbing forces at many points on an orbit. This give a better picture of the orbital evolution of an individual meteoroid, but many meteoroids have to be integrated in order to obtain a realistic picture of the evolution of a meteoroid stream. The notion of generating a family of hypothetical meteoroids to represent a stream and directly integrate the motion of each was probably first used by Williams Murray & Hughes (1979), to investigate the Quadrantids. Because of computing limitations, only 10 test meteoroids were used. Only two years later, Hughes et. al. (1981) had increased the number of particles 20-fold to 200 while after a further year, Fox Williams and Hughes used 500 000 test meteoroids to model the Geminid stream. With such a number of meteoroids it was possible for the first time to produce a realistic cross-section of the stream on the ecliptic. From that point on there has been a continued increase in the number of meteoroids, the length of time over which integration is carried out and the frequency with which results can be plotted so that it is now possible to produce moving images of the stream. As a consequence, over recent years, emphasis has moved to considering stream formation and the role fragmentation plays in this.

Quantifying contributions to storm runoff through end-member mixing analysis and hydrologic measurements at the Panola Mountain research watershed (Georgia, USA)

USGS Publications Warehouse

Burns, Douglas A.; McDonnell, Jeffery J.; Hooper, R.P.; Peters, N.E.; Freer, J.E.; Kendall, C.; Beven, K.

2001-01-01

The geographic sources and hydrologic flow paths of stormflow in small catchments are not well understood because of limitations in sampling methods and insufficient resolution of potential end members. To address these limitations, an extensive hydrologic dataset was collected at a 10 ha catchment at Panola Mountain research watershed near Atlanta, GA, to quantify the contribution of three geographic sources of stormflow. Samples of stream water, runoff from an outcrop, and hillslope subsurface stormflow were collected during two rainstorms in the winter of 1996, and an end-member mixing analysis model that included five solutes was developed. Runoff from the outcrop, which occupies about one-third of the catchment area, contributed 50-55% of the peak streamflow during the 2 February rainstorm, and 80-85% of the peak streamflow during the 6-7 March rainstorm; it also contributed about 50% to total streamflow during the dry winter conditions that preceded the 6-7 March storm. Riparian groundwater runoff was the largest component of stream runoff (80-100%) early during rising streamflow and throughout stream recession, and contributed about 50% to total stream runoff during the 2 February storm, which was preceded by wet winter conditions. Hillslope runoff contributed 25-30% to peak stream runoff and 15-18% to total stream runoff during both storms. The temporal response of the three runoff components showed general agreement with hydrologic measurements from the catchment during each storm. Estimates of recharge from the outcrop to the riparian aquifer that were independent of model calculations indicated that storage in the riparian aquifer could account for the volume of rain that fell on the outcrop but did not contribute to stream runoff. The results of this study generally indicate that improvements in the ability of mixing models to describe the hydrologic response accurately in forested catchments may depend on better identification, and detailed spatial and temporal characterization of the mobile waters from the principal hydrologic source areas that contribute to stream runoff. Copyright ?? 2001 John Wiley & Sons, Ltd.

Presence of Fungicides Used to Control Asian Soybean Rust in Streams in Agricultural Areas in the United States

NASA Astrophysics Data System (ADS)

Sandstrom, M. W.; Battaglin, W. A.

2007-05-01

Concentrations of 11 fungicides were measured in stream samples during 2 years in agricultural areas in the United States that grow predominantly corn and soybean. The fungicides are registered for control of Asian Soybean Rust (ASR), which entered the United States in 2004. Many of these fungicides were registered under an emergency exemption because evaluation of environmental risks related to their widespread use on soybeans had not been completed. Some of these fungicides are considered moderately to highly toxic to fish and aquatic invertebrates. We developed a solid-phase extraction and gas chromatography/mass spectrometry method for determining the fungicides at low concentrations (ng/L). Stream samples were collected 2 to 4 times at study areas during the late spring through fall season when fungicides are applied. Six fungicides registered for control of ASR (Phakospora pachyrhizi) in 2005 were measured in streams in Alabama, Georgia, North Carolina, South Carolina, and Mississippi during August-November, 2005. One or more fungicides were detected in 8 of the 12 streams sampled. Azoxystrobin, pyraclostrobin, propiconazole, tebuconazole, and myclobutanil were found in at least one of the 40 samples collected, while chlorothalonil was not found. Azoxystrobin was detected most frequently, in 35 percent of the samples. In 2006, five additional fungicides registered for use in control of ASR were included in the analytical method. One or more of the fungicides (azoxystrobin, pyraclostrobin, trifloxystrobin, metconazole, propiconazole, tebuconazole, tetraconazole, myclobutanil) were detected in 12 of the 16 streams sampled from areas in the South and Midwest during May-September, 2006. Azoxystrobin was detected most frequently (40 percent of the samples) and the highest concentration was 1.1 μg/L in a small predominantly cotton and soybean watershed. The highest concentrations of azoxystrobin were measured prior to the spread of ASR in 2006, and the detections in streams might be related to use on other crops. Concentrations of the fungicides measured were about 100 times lower than aquatic toxicity levels. These results show that ASR fungicides were found in streams before extensive spread of ASR in the United States.

Use of gene-expression programming to estimate Manning’s roughness coefficient for high gradient streams

USGS Publications Warehouse

Azamathulla, H. Md.; Jarrett, Robert D.

2013-01-01

Manning’s roughness coefficient (n) has been widely used in the estimation of flood discharges or depths of flow in natural channels. Therefore, the selection of appropriate Manning’s nvalues is of paramount importance for hydraulic engineers and hydrologists and requires considerable experience, although extensive guidelines are available. Generally, the largest source of error in post-flood estimates (termed indirect measurements) is due to estimates of Manning’s n values, particularly when there has been minimal field verification of flow resistance. This emphasizes the need to improve methods for estimating n values. The objective of this study was to develop a soft computing model in the estimation of the Manning’s n values using 75 discharge measurements on 21 high gradient streams in Colorado, USA. The data are from high gradient (S > 0.002 m/m), cobble- and boulder-bed streams for within bank flows. This study presents Gene-Expression Programming (GEP), an extension of Genetic Programming (GP), as an improved approach to estimate Manning’s roughness coefficient for high gradient streams. This study uses field data and assessed the potential of gene-expression programming (GEP) to estimate Manning’s n values. GEP is a search technique that automatically simplifies genetic programs during an evolutionary processes (or evolves) to obtain the most robust computer program (e.g., simplify mathematical expressions, decision trees, polynomial constructs, and logical expressions). Field measurements collected by Jarrett (J Hydraulic Eng ASCE 110: 1519–1539, 1984) were used to train the GEP network and evolve programs. The developed network and evolved programs were validated by using observations that were not involved in training. GEP and ANN-RBF (artificial neural network-radial basis function) models were found to be substantially more effective (e.g., R2 for testing/validation of GEP and RBF-ANN is 0.745 and 0.65, respectively) than Jarrett’s (J Hydraulic Eng ASCE 110: 1519–1539, 1984) equation (R2 for testing/validation equals 0.58) in predicting the Manning’s n.

Ecological condition of the East Fork of the Gila River and selected tributaries: Gila National Forest, New Mexico

Treesearch

Robert D. Ohmart

1996-01-01

Ecological condition of riparian habitats along the East Fork of the Gila River, Main Diamond Creek, lower South Diamond Creek, and Black Canyon Creek are all in very heavily degraded condition. Channel cross-sections show extensive entrenchment, high width-to-depth ratios, and numerous reaches where banks are sloughing into the stream, especially on the East Fork of...

Cultural Resources Investigation of Eau Galle Reservoir, Pierce and St. Croix Counties, Wisconsin,

DTIC Science & Technology

1985-05-01

descriptions) 6. Roads, paths, and trails 7. Ditches, irrigation , tiling 8. Stream/channel alteration (of any descrip- tion) 9. Extensive dredging...not be limited to, the following sections. These sections.do not necessarily need to be discrete sections; however, they should be readily discernable...Collection and Treatment System at Granada , Martin County, Minnesota; KBM, Inc.; Archaeological Field Services, Inc.; Principal Investigator. 1979 An

Temporal patterns in capture rate and sex ratio of forest bats in Arkansas

Treesearch

Roger W. Perry; S. Andrew Carter; Ronald E. Thill

2010-01-01

We quantified changes in capture rates and sex ratios from May to Sept. for eight species of bats, derived from 8 y of extensive mist netting in forests of the Ouachita Mountains, Arkansas. Our primary goal was to determine patterns of relative abundance for each species of bat captured over forest streams and to determine if these patterns were similar to patterns of...

Investigation of flow turning phenomenon - Effect of upstream and downstream propagation

NASA Astrophysics Data System (ADS)

Baum, Joseph D.

1988-01-01

Upstream acoustic-wave propagation in flow injected laterally through the boundary layer of a tube (simulating the flow in a solid-rocket motor) is investigated analytically. A noniterative linearized-block implicit scheme is used to solve the time-dependent compressible Navier-Stokes equations, and the results are presented in extensive graphs and characterized. Acoustic streaming interaction is shown to be significantly greater for upstream than for downstream propagation.

It Systems Supporting the Management of Production Capacity

NASA Astrophysics Data System (ADS)

Milewska, Elżbieta

2017-03-01

The paper presents the problem of manufacturing process flexibility in view of a company's material and information flow stream management. The author of the article has described the functions of a production process control system and presented the characteristics of production capacity intensive and extensive reserves. The MRP II/ERP, MES and APS class IT tools supporting the process of production planning, organization and control have also been discussed.

Agriculture on the Chaco Plain, Paraguay, South America

NASA Technical Reports Server (NTRS)

1990-01-01

This view of extensive agriculture on the Chaco Plain, Paraguay, (22.5S, 60.5W) depicts the fertility of the soils between the Andes Mountains and the Paraguay - Parana Rivers in the northwestern Paraguay. The Gran Chaco Plain is flat landscape built up by sediments. Frontier settlements like Marsical Estigarribia, seen in the image, are dominated by agriculture along the stream courses that abound in the area.

Solutions for the diurnally forced advection-diffusion equation to estimate bulk fluid velocity and diffusivity in streambeds from temperature time series

Treesearch

Charles H. Luce; Daniele Tonina; Frank Gariglio; Ralph Applebee

2013-01-01

Work over the last decade has documented methods for estimating fluxes between streams and streambeds from time series of temperature at two depths in the streambed. We present substantial extension to the existing theory and practice of using temperature time series to estimate streambed water fluxes and thermal properties, including (1) a new explicit analytical...

6th Annual National Small Business Conference

DTIC Science & Technology

2009-06-03

Extension Partnership – MIT Lean Advancement Initiative – Customers • Lean Tools – Value Stream Mapping – Kaizen Events Center for Management...Blue denotes kaizen events Most suppliers did not have in-house lean capability therefore the OEM and customer facilitated the events 36 Center for...Management & Economic Research 37 Kaizen Events • Kaizen is the process of: – Identifying & eliminating waste – as quickly as possible – at the

Characterization of HIFU transducers designed for sonochemistry application: Acoustic streaming.

PubMed

Hallez, L; Touyeras, F; Hihn, J-Y; Bailly, Y

2016-03-01

Cavitation distribution in a High Intensity Focused Ultrasound sonoreactors (HIFU) has been extensively described in the recent literature, including quantification by an optical method (Sonochemiluminescence SCL). The present paper provides complementary measurements through the study of acoustic streaming generated by the same kind of HIFU transducers. To this end, results of mass transfer measurements (electrodiffusional method) were compared to optical method ones (Particle Image Velocimetry). This last one was used in various configurations: with or without an electrode in the acoustic field in order to have the same perturbation of the wave propagation. Results show that the maximum velocity is not located at the focal but shifted near the transducer, and that this shift is greater for high powers. The two cavitation modes (stationary and moving bubbles) are greatly affect the hydrodynamic behavior of our sonoreactors: acoustic streaming and the fluid generated by bubble motion. The results obtained by electrochemical measurements show the same low hydrodynamic activity in the transducer vicinity, the same shift of the active focal toward the transducer, and the same absence of activity in the post-focal axial zone. The comparison with theoretical Eckart's velocities (acoustic streaming in non-cavitating media) confirms a very high activity at the "sonochemical focal", accounted for by wave distortion, which induced greater absorption coefficients. Moreover, the equivalent liquid velocities are one order of magnitude larger than the ones measured by PIV, confirming the enhancement of mass transfer by bubbles oscillation and collapse close to the surface, rather than from a pure streaming effect. Copyright © 2015 Elsevier B.V. All rights reserved.

Contrasting landscape influences on sediment supply and stream restoration priorities in northern Fennoscandia (Sweden and Finland) and coastal British Columbia.

PubMed

Rosenfeld, Jordan; Hogan, Daniel; Palm, Daniel; Lundquist, Hans; Nilsson, Christer; Beechie, Timothy J

2011-01-01

Sediment size and supply exert a dominant control on channel structure. We review the role of sediment supply in channel structure, and how regional differences in sediment supply and land use affect stream restoration priorities. We show how stream restoration goals are best understood within a common fluvial geomorphology framework defined by sediment supply, storage, and transport. Land-use impacts in geologically young landscapes with high sediment yields (e.g., coastal British Columbia) typically result in loss of in-stream wood and accelerated sediment inputs from bank erosion, logging roads, hillslopes and gullies. In contrast, northern Sweden and Finland are landscapes with naturally low sediment yields caused by low relief, resistant bedrock, and abundant mainstem lakes that act as sediment traps. Land-use impacts involved extensive channel narrowing, removal of obstructions, and bank armouring with boulders to facilitate timber floating, thereby reducing sediment supply from bank erosion while increasing export through higher channel velocities. These contrasting land-use impacts have pushed stream channels in opposite directions (aggradation versus degradation) within a phase-space defined by sediment transport and supply. Restoration in coastal British Columbia has focused on reducing sediment supply (through bank and hillslope stabilization) and restoring wood inputs. In contrast, restoration in northern Fennoscandia (Sweden and Finland) has focused on channel widening and removal of bank-armouring boulders to increase sediment supply and retention. These contrasting restoration priorities illustrate the consequences of divergent regional land-use impacts on sediment supply, and the utility of planning restoration activities within a mechanistic sediment supply-transport framework.

Survival and metamorphosis of larval sea lamprey (Petromyzon marinus) residing in Lakes Michigan and Huron near river mouths

USGS Publications Warehouse

Johnson, Nicholas S.; Brenden, Travis O.; Swink, William D.; Lipps, Mathew A.

2016-01-01

Although population demographics of larval lampreys in streams have been studied extensively, demographics in lake environments have not. Here, we estimated survival and rates of metamorphosis for larval sea lamprey (Petromyzon marinus) populations residing in the Great Lakes near river mouths (hereafter termed lentic areas). Tagged larvae were stocked and a Bayesian multi-state tag-recovery model was used to investigate population parameters associated with tag recovery, including survival and metamorphosis probabilities. Compared to previous studies of larvae in streams, larval growth in lentic areas was substantially slower (Brody growth coefficient = 0.00132; estimate based on the recovery of six tagged larvae), survival was slightly greater (annual survival = 63%), and the length at which 50% of the larvae would be expected to metamorphose was substantially shorter (126 mm). Stochastic simulations were used to estimate the production of parasitic stage (juvenile) sea lamprey from a hypothetical population of larvae in a lentic environment. Production of juvenile sea lamprey was substantial because, even though larval growth in these environments was slow relative to stream environments, survival was high and length at metamorphosis was less. However, estimated production of juvenile sea lamprey was less for the lentic environment than for similar simulations for river environments where larvae grew faster. In circumstances where the cost to kill a larva with lampricide was equal and control funds are limited, sea lamprey control effort may be best directed toward larvae in streams with fast-growing larvae, because stream-produced larvae will most likely contribute to juvenile sea lamprey populations.

Water chemistry in 179 randomly selected Swedish headwater streams related to forest production, clear-felling and climate.

PubMed

Löfgren, Stefan; Fröberg, Mats; Yu, Jun; Nisell, Jakob; Ranneby, Bo

2014-12-01

From a policy perspective, it is important to understand forestry effects on surface waters from a landscape perspective. The EU Water Framework Directive demands remedial actions if not achieving good ecological status. In Sweden, 44 % of the surface water bodies have moderate ecological status or worse. Many of these drain catchments with a mosaic of managed forests. It is important for the forestry sector and water authorities to be able to identify where, in the forested landscape, special precautions are necessary. The aim of this study was to quantify the relations between forestry parameters and headwater stream concentrations of nutrients, organic matter and acid-base chemistry. The results are put into the context of regional climate, sulphur and nitrogen deposition, as well as marine influences. Water chemistry was measured in 179 randomly selected headwater streams from two regions in southwest and central Sweden, corresponding to 10 % of the Swedish land area. Forest status was determined from satellite images and Swedish National Forest Inventory data using the probabilistic classifier method, which was used to model stream water chemistry with Bayesian model averaging. The results indicate that concentrations of e.g. nitrogen, phosphorus and organic matter are related to factors associated with forest production but that it is not forestry per se that causes the excess losses. Instead, factors simultaneously affecting forest production and stream water chemistry, such as climate, extensive soil pools and nitrogen deposition, are the most likely candidates The relationships with clear-felled and wetland areas are likely to be direct effects.

Variations in surface water-ground water interactions along a headwater mountain stream : comparisons between transient storage and water balance analyses

USGS Publications Warehouse

Ward, Adam S.; Payn, Robert A.; Gooseff, Michael N.; McGlynn, Brian L.; Bencala, Kenneth E.; Kelleher, Christa A.; Wondzell, Steven M.; Wagener, Thorsten

2013-01-01

The accumulation of discharge along a stream valley is frequently assumed to be the primary control on solute transport processes. Relationships of both increasing and decreasing transient storage, and decreased gross losses of stream water have been reported with increasing discharge; however, we have yet to validate these relationships with extensive field study. We conducted transient storage and mass recovery analyses of artificial tracer studies completed for 28 contiguous 100 m reaches along a stream valley, repeated under four base-flow conditions. We calculated net and gross gains and losses, temporal moments of tracer breakthrough curves, and best fit transient storage model parameters (with uncertainty estimates) for 106 individual tracer injections. Results supported predictions that gross loss of channel water would decrease with increased discharge. However, results showed no clear relationship between discharge and transient storage, and further analysis of solute tracer methods demonstrated that the lack of this relation may be explained by uncertainty and equifinality in the transient storage model framework. Furthermore, comparison of water balance and transient storage approaches reveals complications in clear interpretation of either method due to changes in advective transport time, which sets a the temporal boundary separating transient storage and channel water balance. We have little ability to parse this limitation of solute tracer methods from the physical processes we seek to study. We suggest the combined analysis of both transient storage and channel water balance more completely characterizes transport of solutes in stream networks than can be inferred from either method alone.

The impact of buffer strips and stream-side grazing on small mammals in southwestern Wisconsin

USGS Publications Warehouse

Chapman, Erik W.; Ribic, C.A.

2002-01-01

The practice of continuously grazing cattle along streams has caused extensive degradation of riparian habitats. Buffer strips and managed intensive rotational grazing (MIRG) have been proposed to protect and restore stream ecosystems in Wisconsin. However, the ecological implications of a switch from traditional livestock management to MIRG or buffer strip establishment have not been investigated. Differences in small mammal communities associated with riparian areas on continuously grazed and MIRG pastures, as well as vegetative buffer strips adjacent to row crops, were investigated in southwestern Wisconsin during May-September 1997 and 1998. More species (mean of 6-7) were found on the buffer sites than on the pasture sites (mean of 2-5). Total small mammal abundance on buffer sites was greater than on the pastures as well: there were 3-5 times as many animals on the buffer sites compared to the pasture sites, depending on year. There were no differences in species richness or total abundance between MIRG and continuously grazed pastures in either year. Total small mammal abundance was greater near the stream than away from the stream, regardless of farm management practice but there were no differences in species richness. Buffer strips appear to support a particularly rich and abundant small mammal community. Although results did not detect a difference in small mammal use between pasture types, farm-wide implications of a conversion from continuous to MIRG styles of grazing may benefit small mammals indirectly by causing an increase in the prevalence of pasture in the agricultural landscape.

Continuous treatment of N-Methyl-p-nitro aniline (MNA) in an Upflow Anaerobic Sludge Blanket (UASB) bioreactor

PubMed Central

Olivares, Christopher I.; Wang, Junqin; Silva Luna, Carlos D.; Field, Jim A.; Abrell, Leif; Sierra-Alvarez, Reyes

2017-01-01

N-methyl-p-nitroaniline (MNA) is an ingredient of insensitive munitions (IM) compounds that serves as a plasticizer and helps reduce unwanted detonations. As its use becomes widespread, MNA waste streams will be generated, necessitating viable treatment options. We studied MNA biodegradation and its inhibition potential to, a representative anaerobic microbial population in wastewater treatment, methanogens. Anaerobic biodegradation and toxicity assays were performed and an up-flow anaerobic sludge blanket reactor (UASB) was operated to test continuous degradation of MNA. MNA was transformed almost stoichiometrically to N-methyl-p-phenylenediamine (MPD). MPD was not mineralized, however, it was readily autoxidized and polymerized extensively upon aeration at pH = 9. In the UASB reactor, MNA was fully degraded up to a loading rate of 297.5 μM MNA d-1). Regarding toxicity, MNA was very inhibitory to acetoclastic methanogens (IC50 = 103 μM) whereas MPD was much less toxic, causing only 13.9% inhibition at the highest concentration tested (1025 μM). The results taken as a whole indicate that anaerobic sludge can transform MNA to MPD continuously, and that the transformation decreases the cytotoxicity of the parent pollutant. MPD can be removed through extensive polymerization. These insights could help define efficient treatment options for waste streams polluted with MNA. PMID:26454121

Electrokinetic energy conversion efficiency of viscoelastic fluids in a polyelectrolyte-grafted nanochannel.

PubMed

Jian, Yongjun; Li, Fengqin; Liu, Yongbo; Chang, Long; Liu, Quansheng; Yang, Liangui

2017-08-01

In order to conduct extensive investigation of energy harvesting capabilities of nanofluidic devices, we provide analytical solutions for streaming potential and electrokinetic energy conversion (EKEC) efficiency through taking the combined consequences of soft nanochannel, a rigid nanochannel whose surface is covered by charged polyelectrolyte layer, and viscoelastic rheology into account. The viscoelasticity of the fluid is considered by employing the Maxwell constitutive model when the forcing frequency of an oscillatory driving pressure flow matches with the inverse of the relaxation time scale of a typical viscoelastic fluid. We compare the streaming potential and EKEC efficiency with those of a rigid nanochannel, having zeta potential equal to the electrostatic potential at the solid-polyelectrolyte interface of the soft nanochannels. Within the present selected parameter ranges, it is shown that the different peaks of maximal streaming potential and EKEC efficiency for the rigid nanochannel are larger than those for the soft nanochannel when forcing frequencies of the driving pressure gradient are close to resonating frequencies. However, more enhanced streaming potential and EKEC efficiency for a soft nanochannel can be found in most of the regions away from these resonant frequencies. Moreover, the influence of several dimensionless parameters on EKEC efficiency is discussed in detail. Finally, within the given parametric regions, the maximum efficiency at some resonant frequency obtained in present analysis is about 25%. Copyright © 2017 Elsevier B.V. All rights reserved.

Spatial and temporal variability in the effects of wildfire and drought on thermal habitat for a desert trout

USGS Publications Warehouse

Schultz, Luke; Heck, Michael; Hockman-Wert, David; Allai, T; Wengerd, Seth J.; Cook, NA; Dunham, Jason B.

2017-01-01

We studied how drought and an associated stressor, wildfire, influenced stream flow permanence and thermal regimes in a Great Basin stream network. We quantified these responses by collecting information with a spatially extensive network of data loggers. To understand the effects of wildfire specifically, we used data from 4 additional sites that were installed prior to a 2012 fire that burned nearly the entire watershed. Within the sampled network 73 reaches were classified as perennial, yet only 51 contained surface water during logger installation in 2014. Among the sites with pre-fire temperature data, we observed 2–4 °C increases in maximum daily stream temperature relative to an unburned control in the month following the fire; effects (elevated up to 6.6 °C) appeared to persist for at least one year. When observed August mean temperatures in 2015 (the peak of regionally severe drought) were compared to those predicted by a regional stream temperature model, we observed deviations of −2.1°-3.5°. The model under-predicted and over-predicted August mean by > 1 °C in 54% and 10% of sites, respectively, and deviance from predicted was negatively associated with elevation. Combined drought and post-fire conditions appeared to greatly restrict thermally-suitable habitat for Lahontan cutthroat trout (Oncorhynchus clarkii henshawi).

Coal-tar based pavement sealant toxicity to freshwater macroinvertebrates.

PubMed

Bryer, Pamela J; Scoggins, Mateo; McClintock, Nancy L

2010-05-01

Non-point-source pollution is a major source of ecological impairment in urban stream systems. Recent work suggests that coal-tar pavement sealants, used extensively to protect parking areas, may be contributing a large portion of the polycyclic aromatic hydrocarbon (PAH) loading seen in urban stream sediments. The hypothesis that dried coal-tar pavement sealant flake could alter the macroinvertebrate communities native to streams in Austin, TX was tested using a controlled outdoor laboratory type approach. The treatment groups were: control, low, medium, and high with total PAH concentrations (TPAH = sum of 16 EPA priority pollutant PAHs) of 0.1, 7.5, 18.4, & 300 mg/kg respectively. The low, medium, and high treatments were created via the addition of dried coal-tar pavement sealant to a sterile soil. At the start of the 24-day exposure, sediment from a minimally impacted local reference site containing a community of live sediment-dwelling benthic macroinvertebrates was added to each replicate. An exposure-dependent response was found for several stream health measures and for several individual taxa. There were community differences in abundance (P = 0.0004) and richness (P < 0.0001) between treatments in addition to specific taxa responses, displaying a clear negative relationship with the amount of coal-tar sealant flake. These results support the hypothesis that coal-tar pavement sealants contain bioavailable PAHs that may harm aquatic environments. Copyright 2009 Elsevier Ltd. All rights reserved.

Investigations of the preferred modes of north Pacific jet variability, their downstream impacts, and tropical and extratropical precursors

NASA Astrophysics Data System (ADS)

Griffin, Kyle S.

Time extended EOF (TE-EOF) analysis is employed to examine the synoptic-scale evolution of the two leading modes of north Pacific jet stream variability, namely its zonal extension/retraction (TE-EOF 1) and the north/south shift of its exit region (TE-EOF 2). Composite analyses are constructed preceding and following peaks in the principal component associated with each of the two TE-EOFs, providing insight into the preferred evolutions of the north Pacific jet. Jet extension events are associated with an anomalous Gulf of Alaska cyclone, while jet retractions are associated with an anomalous ridge over the Aleutians. Similar but shifted upper level patterns are noted with the corresponding poleward/equatorward shifted jet phases, with the poleward (equatorward) shift of the jet exit region associated with anomalous low-level warmth (cold) over western North America. Such composites also suggest connections between certain phases of these leading modes of jet variability and deep convection in the tropics, a connection that has been challenging to physically diagnose in previous studies. The isentropic pressure depth measures the mass contained within an isentropic layer in a given grid column, enabling the tracking of mass exhausted by deep convection. The gradient of isentropic pressure depth is directly associated with the vertical geostrophic wind shear in that layer and thus provides a means to track the influence of convective mass flux on the evolution of the jet stream. A case study focused on the extreme North American warm episode of March 2012 demonstrates how positive pressure depth anomalies from a strong MJO event impact the jet stream over eastern Asia and drive a portion of the mid-latitude response that leads to the flow amplification and subsequent downstream warmth. This study demonstrates one way by which isentropic pressure depth can diagnose the impacts of tropical deep convection on the mid-latitude circulation. Using TE-EOFs, composites of isentropic pressure depth are constructed, to examine the evolution of pressure depth anomalies preceding each phase of the two leading modes of jet variability. In jet extension events, a large negative pressure depth anomaly in the 315-330 K isentropic layer and a positive pressure depth anomaly in the 340-355 K isentropic layer align north and south of the climatological jet exit region, respectively. A similar but opposite configuration is found in jet retraction events. During poleward shifted jet events, the configuration of pressure depth anomalies is comparable to that observed in jet extension events, but shifted poleward. Positive pressure depth anomalies in each set of events predominantly originate from either the Maritime Continent or East Asia and track along the climatological jet before impacting the exit region of the jet stream. Negative pressure depth anomalies have similar upstream origins before moving through the jet in a similar manner. These composite evolutions provide insight into the synoptic-scale evolutions that precede the preferred modes of jet variability, highlighting the influence of both mid-latitude weather systems and mass flux from tropical deep convection on North Pacific jet variability.

The dynamics of Andromeda's dwarf galaxies and stellar streams

NASA Astrophysics Data System (ADS)

Collins, Michelle L. M.; Rich, R. Michael; Ibata, Rodrigo; Martin, Nicolas; Preston, Janet; PAndAS Collaboration

2017-03-01

As part of the Z-PAndAS Keck II DEIMOS survey of resolved stars in our neighboring galaxy, Andromeda (M31), we have built up a unique data set of measured velocities and chemistries for thousands of stars in the Andromeda stellar halo, particularly probing its rich and complex substructure. In this contribution, we will discuss the structural, dynamical and chemical properties of Andromeda's dwarf spheroidal galaxies, and how there is no observational evidence for a difference in the evolutionary histories of those found on and off M31's vast plane of satellites. We will also discuss a possible extension to the most significant merger event in M31 - the Giant Southern Stream - and how we can use this feature to refine our understanding of M31's mass profile, and its complex evolution.

Three studies using Ceriodaphnia to detect nonpoint sources of metals from mine drainage

USGS Publications Warehouse

Nimmo, Del Wayne R.; Dodson, Max H.; Davies, Patrick H.; Greene, Joseph C.; Kerr, Mark A.

1990-01-01

Since its introduction, Ceriodaphnia dubia, a small planktonic daphnid, has been widely used for biomonitoring point source discharges. This species was also used to determine nonpoint sources of metals and related contaminants in three trout streams in the west where mining activities have been widespread. Along Chalk Creek, Colo., specific tailings (and impacted tributaries) were sources of metals toxic to fish using the water in a hatchery. At stations below extensive mine tailings in the upper Clark Fork River, Mont., drainage was acutely and chronically toxic to daphnids and paralleled reduced or nonexistent populations of trout. In Whitewood Creek, S. Dak., reduced toxicity below a gold mine portended that fish could live in the stream segment previously impaired by the mine. Toxicity downstream revealed a previously unknown nonpoint source of chromium.

Jet stream winds - Enhanced aircraft data acquisition and analysis over Southwest Asia

NASA Technical Reports Server (NTRS)

Tenenbaum, J.

1989-01-01

A project is described for providing the accurate initial and verification analyses for the jet stream in regions where general circulation models are known to have large systematic errors, either due to the extreme sparsity of data or to incorrect physical parameterizations. For this purpose, finely spaced aircraft-based meteorological data for the Southwest Asian regions collected for three 10-day periods in the winter of 1988-1989 will be used, together with corresponding data for the North American regions used as a control, to rerun the assimilation cycles and forecast models of the NMC and the NASA Goddard Laboratory for Atmospheres. Data for Southeast Asia will be collected by three carriers with extensive wide-body routes crossing the total region, while data for the North American region will be obtained from the archives of ACARS and GTS.

Nitrifying biomass characterization and monitoring during bioaugmentation in a membrane bioreactor.

PubMed

D'Anteo, Sibilla; Mannucci, Alberto; Meliani, Matteo; Verni, Franco; Petroni, Giulio; Munz, Giulio; Lubello, Claudio; Mori, Gualtiero; Vannini, Claudia

2015-01-01

A membrane bioreactor (MBR), fed with domestic wastewater, was bioaugmented with nitrifying biomass selected in a side-stream MBR fed with a synthetic high nitrogen-loaded influent. Microbial communities evolution was monitored and comparatively analysed through an extensive bio-molecular investigation (16S rRNA gene library construction and terminal-restriction fragment length polymorphism techniques) followed by statistical analyses. As expected, a highly specialized nitrifying biomass was selected in the side-stream reactor fed with high-strength ammonia synthetic wastewater. The bioaugmentation process caused an increase of nitrifying bacteria of the genera Nitrosomonas (up to more than 30%) and Nitrobacter in the inoculated MBR reactor. The overall structure of the microbial community changed in the mainstream MBR as a result of bioaugmentation. The effect of bioaugmentation in the shift of the microbial community was also verified through statistical analysis.

Command system output bit verification

NASA Technical Reports Server (NTRS)

Odd, C. W.; Abbate, S. F.

1981-01-01

An automatic test was developed to test the ability of the deep space station (DSS) command subsystem and exciter to generate and radiate, from the exciter, the correct idle bit sequence for a given flight project or to store and radiate received command data elements and files without alteration. This test, called the command system output bit verification test, is an extension of the command system performance test (SPT) and can be selected as an SPT option. The test compares the bit stream radiated from the DSS exciter with reference sequences generated by the SPT software program. The command subsystem and exciter are verified when the bit stream and reference sequences are identical. It is a key element of the acceptance testing conducted on the command processor assembly (CPA) operational program (DMC-0584-OP-G) prior to its transfer from development to operations.

Evaluation of Metal Toxicity in Streams Affected by Abandoned Mine Lands, Upper Animas River Watershed, Colorado

USGS Publications Warehouse

Besser, John M.; Allert, Ann L.; Hardesty, Douglas K.; Ingersoll, Christopher G.; May, Thomas W.; Wang, Ning; Leib, Kenneth J.

2001-01-01

Acid drainage from abandoned mines and from naturally-acidic rocks and soil in the upper Animas River watershed of Colorado generates elevated concentrations of acidity and dissolved metals in stream waters and deposition of metal-contaminated particulates in streambed sediments, resulting in both toxicity and habitat degradation for stream biota. High concentrations of iron (Fe), aluminum (Al), zinc (Zn), copper (Cu), cadmium (Cd), and lead (Pb) occur in acid streams draining headwaters of the upper Animas River watershed, and high concentrations of some metals, especially Zn, persist in circumneutral reaches of the Animas River and Mineral Creek, downstream of mixing zones of acid tributaries. Seasonal variation of metal concentrations is reflected in variation in toxicity of stream water. Loadings of dissolved metals to the upper Animas River and tributaries are greatest during summer, during periods of high stream discharge from snowmelt and monsoonal rains, but adverse effects on stream biota may be greater during winter low-flow periods, when stream flows are dominated by inputs of groundwater and contain greatest concentrations of dissolved metals. Fine stream-bed sediments of the upper Animas River watershed also contain elevated concentrations of potentially toxic metals. Greatest sediment metal concentrations occur in the Animas River upstream from Silverton, where there are extensive deposits of mine and mill tailings, and in mixing zones in the Animas River and lower Mineral Creek, where precipitates of Fe and Al oxides also contain high concentrations of other metals. This report summarizes the findings of a series of toxicity studies in streams of the upper Animas River watershed, conducted on-site and in the laboratory between 1998 and 2000. The objectives of these studies were: (1) to determine the relative toxicity of stream water and fine stream-bed sediments to fish and invertebrates; (2) to determine the seasonal range of toxicity in stream water; (3) to develop site-specific thresholds for toxicity of Zn and Cu in stream water; and (4) to develop models of the contributions of Cu and Zn to toxicity of stream water, which may be used to characterize toxicity before and after planned remediation efforts. We evaluated the toxicity of metal-contaminated sediments by conducting sediment toxicity tests with two species of benthic invertebrates, the midge, Chironomus tentans. and the amphipod, Hyalella azteca. Laboratory toxicity tests with both taxa, exposed to fine stream-bed sediments collected in September 1997, showed some evidence of sediment toxicity, as survival of midge larvae in sediments from Cement Creek (C48) and lower Mineral Creek (M34), and growth of amphipods in sediments from these sites and three Animas River sites (A68, Animas at Silverton; A72, Animas below Silverton, and A73, Animas at Elk Park) were significantly reduced compared to a reference site, South Mineral Creek (SMC) . Amphipods were also exposed to site water and fine stream-bed sediment, separately and in combination, during the late summer low flow period (August-September) of 1998. In these studies, stream water, with no sediment present, from all five sites tested (same sites as above, except C48) caused 90% to 100% mortality of amphipods. In contrast, significant reductions in survival of amphipods occurred at two sites (A72 and SMC) in exposures with field-collected sediment plus stream water, and at only one site (A72) in exposures with sediments and clean overlying water. Concentrations of Zn, Pb, Cu, and Cd were high in both sediment and pore water (interstitial water) from most sites tested, but greatest sediment toxicity was apparently associated with greater concentrations of Fe and/or Al in sediments. These results suggest that fine stream-bed sediments of the more contaminated stream reaches of the upper Animas River watershed are toxic to benthic invertebrates, but that these impacts are less serious than tox

Continental hydrosystem modelling: the concept of nested stream-aquifer interfaces

NASA Astrophysics Data System (ADS)

Flipo, N.; Mouhri, A.; Labarthe, B.; Biancamaria, S.; Rivière, A.; Weill, P.

2014-08-01

Coupled hydrological-hydrogeological models, emphasising the importance of the stream-aquifer interface, are more and more used in hydrological sciences for pluri-disciplinary studies aiming at investigating environmental issues. Based on an extensive literature review, stream-aquifer interfaces are described at five different scales: local [10 cm-~10 m], intermediate [~10 m-~1 km], watershed [10 km2-~1000 km2], regional [10 000 km2-~1 M km2] and continental scales [>10 M km2]. This led us to develop the concept of nested stream-aquifer interfaces, which extends the well-known vision of nested groundwater pathways towards the surface, where the mixing of low frequency processes and high frequency processes coupled with the complexity of geomorphological features and heterogeneities creates hydrological spiralling. This conceptual framework allows the identification of a hierarchical order of the multi-scale control factors of stream-aquifer hydrological exchanges, from the larger scale to the finer scale. The hyporheic corridor, which couples the river to its 3-D hyporheic zone, is then identified as the key component for scaling hydrological processes occurring at the interface. The identification of the hyporheic corridor as the support of the hydrological processes scaling is an important step for the development of regional studies, which is one of the main concerns for water practitioners and resources managers. In a second part, the modelling of the stream-aquifer interface at various scales is investigated with the help of the conductance model. Although the usage of the temperature as a tracer of the flow is a robust method for the assessment of stream-aquifer exchanges at the local scale, there is a crucial need to develop innovative methodologies for assessing stream-aquifer exchanges at the regional scale. After formulating the conductance model at the regional and intermediate scales, we address this challenging issue with the development of an iterative modelling methodology, which ensures the consistency of stream-aquifer exchanges between the intermediate and regional scales. Finally, practical recommendations are provided for the study of the interface using the innovative methodology MIM (Measurements-Interpolation-Modelling), which is graphically developed, scaling in space the three pools of methods needed to fully understand stream-aquifer interfaces at various scales. In the MIM space, stream-aquifer interfaces that can be studied by a given approach are localised. The efficiency of the method is demonstrated with two examples. The first one proposes an upscaling framework, structured around river reaches of ~10-100 m, from the local to the watershed scale. The second example highlights the usefulness of space borne data to improve the assessment of stream-aquifer exchanges at the regional and continental scales. We conclude that further developments in modelling and field measurements have to be undertaken at the regional scale to enable a proper modelling of stream-aquifer exchanges from the local to the continental scale.

Geology of the Bighorn Mountains

USGS Publications Warehouse

Darton, N.H.

1906-01-01

There are extensive, forests in the mountains, which are now included in a Government forest reserve, but their timber is not of great value. Much of the area below timber line contains an abundance of luxuriant grasses and other plants, which afford excellent pasturage for stock, and large herds of sheep and cattle are ranged in the region during the short summer season. Game is moderately abundant, and most of the streams contain large numbers of trout. The region is one of great interest geologically on account of its variety of sedimentary rocks, interesting structure, and remarkably instructive glacial features. The central area, with its high peaks, presents alpine scenery of notable character. Doubtless in the future the region will be extensively visited by tourists, hunters, and geologists.

Lab Streaming Layer Enabled Myo Data Collection Software User Manual

DTIC Science & Technology

2017-06-07

time - series data over a local network. LSL handles the networking, time -synchronization, (near-) real- time access as well as, optionally, the... series data collection (e.g., brain activity, heart activity, muscle activity) using the LSL application programming interface (API). Time -synchronized...saved to a single extensible data format (XDF) file. Once the time - series data are collected in a Lab Recorder XDF file, users will be able to query

The DANTE Boltzmann transport solver: An unstructured mesh, 3-D, spherical harmonics algorithm compatible with parallel computer architectures

DOE Office of Scientific and Technical Information (OSTI.GOV)

McGhee, J.M.; Roberts, R.M.; Morel, J.E.

1997-06-01

A spherical harmonics research code (DANTE) has been developed which is compatible with parallel computer architectures. DANTE provides 3-D, multi-material, deterministic, transport capabilities using an arbitrary finite element mesh. The linearized Boltzmann transport equation is solved in a second order self-adjoint form utilizing a Galerkin finite element spatial differencing scheme. The core solver utilizes a preconditioned conjugate gradient algorithm. Other distinguishing features of the code include options for discrete-ordinates and simplified spherical harmonics angular differencing, an exact Marshak boundary treatment for arbitrarily oriented boundary faces, in-line matrix construction techniques to minimize memory consumption, and an effective diffusion based preconditioner formore » scattering dominated problems. Algorithm efficiency is demonstrated for a massively parallel SIMD architecture (CM-5), and compatibility with MPP multiprocessor platforms or workstation clusters is anticipated.« less

Dense and Sparse Matrix Operations on the Cell Processor

DOE Office of Scientific and Technical Information (OSTI.GOV)

Williams, Samuel W.; Shalf, John; Oliker, Leonid

2005-05-01

The slowing pace of commodity microprocessor performance improvements combined with ever-increasing chip power demands has become of utmost concern to computational scientists. Therefore, the high performance computing community is examining alternative architectures that address the limitations of modern superscalar designs. In this work, we examine STI's forthcoming Cell processor: a novel, low-power architecture that combines a PowerPC core with eight independent SIMD processing units coupled with a software-controlled memory to offer high FLOP/s/Watt. Since neither Cell hardware nor cycle-accurate simulators are currently publicly available, we develop an analytic framework to predict Cell performance on dense and sparse matrix operations, usingmore » a variety of algorithmic approaches. Results demonstrate Cell's potential to deliver more than an order of magnitude better GFLOP/s per watt performance, when compared with the Intel Itanium2 and Cray X1 processors.« less

Insertion of operation-and-indicate instructions for optimized SIMD code

DOEpatents

Eichenberger, Alexander E; Gara, Alan; Gschwind, Michael K

2013-06-04

Mechanisms are provided for inserting indicated instructions for tracking and indicating exceptions in the execution of vectorized code. A portion of first code is received for compilation. The portion of first code is analyzed to identify non-speculative instructions performing designated non-speculative operations in the first code that are candidates for replacement by replacement operation-and-indicate instructions that perform the designated non-speculative operations and further perform an indication operation for indicating any exception conditions corresponding to special exception values present in vector register inputs to the replacement operation-and-indicate instructions. The replacement is performed and second code is generated based on the replacement of the at least one non-speculative instruction. The data processing system executing the compiled code is configured to store special exception values in vector output registers, in response to a speculative instruction generating an exception condition, without initiating exception handling.

A programmable computational image sensor for high-speed vision

NASA Astrophysics Data System (ADS)

Yang, Jie; Shi, Cong; Long, Xitian; Wu, Nanjian

2013-08-01

In this paper we present a programmable computational image sensor for high-speed vision. This computational image sensor contains four main blocks: an image pixel array, a massively parallel processing element (PE) array, a row processor (RP) array and a RISC core. The pixel-parallel PE is responsible for transferring, storing and processing image raw data in a SIMD fashion with its own programming language. The RPs are one dimensional array of simplified RISC cores, it can carry out complex arithmetic and logic operations. The PE array and RP array can finish great amount of computation with few instruction cycles and therefore satisfy the low- and middle-level high-speed image processing requirement. The RISC core controls the whole system operation and finishes some high-level image processing algorithms. We utilize a simplified AHB bus as the system bus to connect our major components. Programming language and corresponding tool chain for this computational image sensor are also developed.

A biconjugate gradient type algorithm on massively parallel architectures

NASA Technical Reports Server (NTRS)

Freund, Roland W.; Hochbruck, Marlis

1991-01-01

The biconjugate gradient (BCG) method is the natural generalization of the classical conjugate gradient algorithm for Hermitian positive definite matrices to general non-Hermitian linear systems. Unfortunately, the original BCG algorithm is susceptible to possible breakdowns and numerical instabilities. Recently, Freund and Nachtigal have proposed a novel BCG type approach, the quasi-minimal residual method (QMR), which overcomes the problems of BCG. Here, an implementation is presented of QMR based on an s-step version of the nonsymmetric look-ahead Lanczos algorithm. The main feature of the s-step Lanczos algorithm is that, in general, all inner products, except for one, can be computed in parallel at the end of each block; this is unlike the other standard Lanczos process where inner products are generated sequentially. The resulting implementation of QMR is particularly attractive on massively parallel SIMD architectures, such as the Connection Machine.

Implementation of an ADI method on parallel computers

NASA Technical Reports Server (NTRS)

Fatoohi, Raad A.; Grosch, Chester E.

1987-01-01

The implementation of an ADI method for solving the diffusion equation on three parallel/vector computers is discussed. The computers were chosen so as to encompass a variety of architectures. They are: the MPP, an SIMD machine with 16K bit serial processors; FLEX/32, an MIMD machine with 20 processors; and CRAY/2, an MIMD machine with four vector processors. The Gaussian elimination algorithm is used to solve a set of tridiagonal systems on the FLEX/32 and CRAY/2 while the cyclic elimination algorithm is used to solve these systems on the MPP. The implementation of the method is discussed in relation to these architectures and measures of the performance on each machine are given. Simple performance models are used to describe the performance. These models highlight the bottlenecks and limiting factors for this algorithm on these architectures. Finally, conclusions are presented.

Implementation of an ADI method on parallel computers

NASA Technical Reports Server (NTRS)

Fatoohi, Raad A.; Grosch, Chester E.

1987-01-01

In this paper the implementation of an ADI method for solving the diffusion equation on three parallel/vector computers is discussed. The computers were chosen so as to encompass a variety of architectures. They are the MPP, an SIMD machine with 16-Kbit serial processors; Flex/32, an MIMD machine with 20 processors; and Cray/2, an MIMD machine with four vector processors. The Gaussian elimination algorithm is used to solve a set of tridiagonal systems on the Flex/32 and Cray/2 while the cyclic elimination algorithm is used to solve these systems on the MPP. The implementation of the method is discussed in relation to these architectures and measures of the performance on each machine are given. Simple performance models are used to describe the performance. These models highlight the bottlenecks and limiting factors for this algorithm on these architectures. Finally conclusions are presented.

A heuristic for deriving the optimal number and placement of reconnaissance sensors

NASA Astrophysics Data System (ADS)

Nanda, S.; Weeks, J.; Archer, M.

2008-04-01

A key to mastering asymmetric warfare is the acquisition of accurate intelligence on adversaries and their assets in urban and open battlefields. To achieve this, one needs adequate numbers of tactical sensors placed in locations to optimize coverage, where optimality is realized by covering a given area of interest with the least number of sensors, or covering the largest possible subsection of an area of interest with a fixed set of sensors. Unfortunately, neither problem admits a polynomial time algorithm as a solution, and therefore, the placement of such sensors must utilize intelligent heuristics instead. In this paper, we present a scheme implemented on parallel SIMD processing architectures to yield significantly faster results, and that is highly scalable with respect to dynamic changes in the area of interest. Furthermore, the solution to the first problem immediately translates to serve as a solution to the latter if and when any sensors are rendered inoperable.

A VLSI chip set for real time vector quantization of image sequences

NASA Technical Reports Server (NTRS)

Baker, Richard L.

1989-01-01

The architecture and implementation of a VLSI chip set that vector quantizes (VQ) image sequences in real time is described. The chip set forms a programmable Single-Instruction, Multiple-Data (SIMD) machine which can implement various vector quantization encoding structures. Its VQ codebook may contain unlimited number of codevectors, N, having dimension up to K = 64. Under a weighted least squared error criterion, the engine locates at video rates the best code vector in full-searched or large tree searched VQ codebooks. The ability to manipulate tree structured codebooks, coupled with parallelism and pipelining, permits searches in as short as O (log N) cycles. A full codebook search results in O(N) performance, compared to O(KN) for a Single-Instruction, Single-Data (SISD) machine. With this VLSI chip set, an entire video code can be built on a single board that permits realtime experimentation with very large codebooks.

Observed and modeled mesoscale variability near the Gulf Stream and Kuroshio Extension

NASA Astrophysics Data System (ADS)

Schmitz, William J.; Holland, William R.

1986-08-01

Our earliest intercomparisons between western North Atlantic data and eddy-resolving two-layer quasi-geostrophic symmetric-double-gyre steady wind-forced numerical model results focused on the amplitudes and largest horizontal scales in patterns of eddy kinetic energy, primarily abyssal. Here, intercomparisons are extended to recent eight-layer model runs and new data which allow expansion of the investigation to the Kuroshio Extension and throughout much of the water column. Two numerical experiments are shown to have realistic zonal, vertical, and temporal eddy scales in the vicinity of the Kuroshio Extension in one case and the Gulf Stream in the other. Model zonal mean speeds are larger than observed, but vertical shears are in general agreement with the data. A longitudinal displacement between the maximum intensity in surface and abyssal eddy fields as observed for the North Atlantic is not found in the model results. The numerical simulations examined are highly idealized, notably with respect to basin shape, topography, wind-forcing, and of course dissipation. Therefore the zero-order agreement between modeled and observed basic characteristics of mid-latitude jets and their associated eddy fields suggests that such properties are predominantly determined by the physical mechanisms which dominate the models, where the fluctuations are the result of instability processes. The comparatively high vertical resolution of the model is needed to compare with new higher-resolution data as well as for dynamical reasons, although the precise number of layers required either kinematically or dynamically (or numerically) has not been determined; we estimate four to six when no attempt is made to account for bottom- or near-surface-intensified phenomena.

Water quality of streams draining abandoned and reclaimed mined lands in the Kantishna Hills area, Denali National Park and Preserve, Alaska, 2008–11

USGS Publications Warehouse

Brabets, Timothy P.; Ourso, Robert T.

2013-01-01

The Kantishna Hills are an area of low elevation mountains in the northwest part of Denali National Park and Preserve, Alaska. Streams draining the Kantishna Hills are clearwater streams that support several species of fish and are derived from rain, snowmelt, and subsurface aquifers. However, the water quality of many of these streams has been degraded by mining. Past mining practices generated acid mine drainage and excessive sediment loads that affected water quality and aquatic habitat. Because recovery through natural processes is limited owing to a short growing season, several reclamation projects have been implemented on several streams in the Kantishna Hills region. To assess the current water quality of streams in the Kantishna Hills area and to determine if reclamation efforts have improved water quality, a cooperative study between the U.S. Geological Survey and the National Park Service was undertaken during 2008-11. High levels of turbidity, an indicator of high concentrations of suspended sediment, were documented in water-quality data collected in the mid-1980s when mining was active. Mining ceased in 1985 and water-quality data collected during this study indicate that levels of turbidity have declined significantly. Turbidity levels generally were less than 2 Formazin Nephelometric Units and suspended sediment concentrations generally were less than 1 milligram per liter during the current study. Daily turbidity data at Rock Creek, an unmined stream, and at Caribou Creek, a mined stream, documented nearly identical patterns of turbidity in 2009, indicating that reclamation as well as natural revegetation in mined streams has improved water quality. Specific conductance and concentrations of dissolved solids and major ions were highest from streams that had been mined. Most of these streams flow into Moose Creek, which functions as an integrator stream, and dilutes the specific conductance and ion concentrations. Calcium and magnesium are the dominant cations, and bicarbonate and sulfate are the dominant anions. Water samples indicate that the water from Rock Creek, Moose Creek, Slate Creek, and Eldorado Creek is a calcium bicarbonate-type water. The remaining sites are a calcium sulfate type water. U.S. Environmental Protection Agency guidelines for arsenic and antimony in drinking water were exceeded in water at Slate Creek and Eureka Creek. Concentrations of arsenic, cadmium, chromium, copper, lead, nickel, and zinc in streambed sediments at many sites exceed sediment quality guideline thresholds that could be toxic to aquatic life. However, assessment of these concentrations, along with the level of organic carbon detected in the sediment, indicate that only concentrations of arsenic and chromium may be toxic to aquatic life at many sites. In 2008 and 2009, 104 macroinvertebrate taxa and 164 algae taxa were identified from samples collected from seven sites. Of the macroinvertebrates, 86 percent were insects and most of the algae consisted of diatoms. Based on the National Community Index, Rock Creek, a reference site, and Caribou Creek, and a mined stream that had undergone some reclamation, exhibited the best overall stream conditions; whereas Slate Creek and Friday Creek, two small streams that were mined extensively, exhibited the worst stream conditions. A non-metric multi-dimensional scaling analysis of the macroinvertebrate and algae data showed a distinct grouping between the 2008 and 2009 samples, likely because of differences between a wet, cool summer in 2008 and a dry, warm summer in 2009.

Distributing Data to Hand-Held Devices in a Wireless Network

NASA Technical Reports Server (NTRS)

Hodges, Mark; Simmons, Layne

2008-01-01

ADROIT is a developmental computer program for real-time distribution of complex data streams for display on Web-enabled, portable terminals held by members of an operational team of a spacecraft-command-and-control center who may be located away from the center. Examples of such terminals include personal data assistants, laptop computers, and cellular telephones. ADROIT would make it unnecessary to equip each terminal with platform- specific software for access to the data streams or with software that implements the information-sharing protocol used to deliver telemetry data to clients in the center. ADROIT is a combination of middleware plus software specific to the center. (Middleware enables one application program to communicate with another by performing such functions as conversion, translation, consolidation, and/or integration.) ADROIT translates a data stream (voice, video, or alphanumerical data) from the center into Extensible Markup Language, effectuates a subscription process to determine who gets what data when, and presents the data to each user in real time. Thus, ADROIT is expected to enable distribution of operations and to reduce the cost of operations by reducing the number of persons required to be in the center.

Influence of various water quality sampling strategies on load estimates for small streams

USGS Publications Warehouse

Robertson, Dale M.; Roerish, Eric D.

1999-01-01

Extensive streamflow and water quality data from eight small streams were systematically subsampled to represent various water‐quality sampling strategies. The subsampled data were then used to determine the accuracy and precision of annual load estimates generated by means of a regression approach (typically used for big rivers) and to determine the most effective sampling strategy for small streams. Estimation of annual loads by regression was imprecise regardless of the sampling strategy used; for the most effective strategy, median absolute errors were ∼30% based on the load estimated with an integration method and all available data, if a regression approach is used with daily average streamflow. The most effective sampling strategy depends on the length of the study. For 1‐year studies, fixed‐period monthly sampling supplemented by storm chasing was the most effective strategy. For studies of 2 or more years, fixed‐period semimonthly sampling resulted in not only the least biased but also the most precise loads. Additional high‐flow samples, typically collected to help define the relation between high streamflow and high loads, result in imprecise, overestimated annual loads if these samples are consistently collected early in high‐flow events.

TriAnd and its siblings: satellites of satellites in the Milky Way halo

NASA Astrophysics Data System (ADS)

Deason, A. J.; Belokurov, V.; Hamren, K. M.; Koposov, S. E.; Gilbert, K. M.; Beaton, R. L.; Dorman, C. E.; Guhathakurta, P.; Majewski, S. R.; Cunningham, E. C.

2014-11-01

We explore the Triangulum-Andromeda (TriAnd) overdensity in the SPLASH (Spectroscopic and Photometric Landscape of Andromeda's Stellar Halo) and SEGUE (the Sloan Extension for Galactic Understanding and Exploration) spectroscopic surveys. Milky Way main-sequence turn-off stars in the SPLASH survey reveal that the TriAnd overdensity and the recently discovered Pan-Andromeda Archaeological Survey (PAndAS) stream share a common heliocentric distance (D ˜ 20 kpc), position on the sky, and line-of-sight velocity (VGSR ˜ 50 km s-1). Similarly, A-type, giant, and main-sequence turn-off stars selected from the SEGUE survey in the vicinity of the Segue 2 satellite show that TriAnd is prevalent in these fields, with a velocity and distance similar to Segue 2. The coincidence of the PAndAS stream and Segue 2 satellite in positional and velocity space to TriAnd suggests that these substructures are all associated, and may be a fossil record of group-infall on to the Milky Way halo. In this scenario, the Segue 2 satellite and PAndAS stream are `satellites of satellites', and the large, metal-rich TriAnd overdensity is the remains of the group central.

Hydrogen Generation Via Fuel Reforming

NASA Astrophysics Data System (ADS)

Krebs, John F.

2003-07-01

Reforming is the conversion of a hydrocarbon based fuel to a gas mixture that contains hydrogen. The H2 that is produced by reforming can then be used to produce electricity via fuel cells. The realization of H2-based power generation, via reforming, is facilitated by the existence of the liquid fuel and natural gas distribution infrastructures. Coupling these same infrastructures with more portable reforming technology facilitates the realization of fuel cell powered vehicles. The reformer is the first component in a fuel processor. Contaminants in the H2-enriched product stream, such as carbon monoxide (CO) and hydrogen sulfide (H2S), can significantly degrade the performance of current polymer electrolyte membrane fuel cells (PEMFC's). Removal of such contaminants requires extensive processing of the H2-rich product stream prior to utilization by the fuel cell to generate electricity. The remaining components of the fuel processor remove the contaminants in the H2 product stream. For transportation applications the entire fuel processing system must be as small and lightweight as possible to achieve desirable performance requirements. Current efforts at Argonne National Laboratory are focused on catalyst development and reactor engineering of the autothermal processing train for transportation applications.

Diagnostic tools for mixing models of stream water chemistry

USGS Publications Warehouse

Hooper, Richard P.

2003-01-01

Mixing models provide a useful null hypothesis against which to evaluate processes controlling stream water chemical data. Because conservative mixing of end‐members with constant concentration is a linear process, a number of simple mathematical and multivariate statistical methods can be applied to this problem. Although mixing models have been most typically used in the context of mixing soil and groundwater end‐members, an extension of the mathematics of mixing models is presented that assesses the “fit” of a multivariate data set to a lower dimensional mixing subspace without the need for explicitly identified end‐members. Diagnostic tools are developed to determine the approximate rank of the data set and to assess lack of fit of the data. This permits identification of processes that violate the assumptions of the mixing model and can suggest the dominant processes controlling stream water chemical variation. These same diagnostic tools can be used to assess the fit of the chemistry of one site into the mixing subspace of a different site, thereby permitting an assessment of the consistency of controlling end‐members across sites. This technique is applied to a number of sites at the Panola Mountain Research Watershed located near Atlanta, Georgia.

Assessing the feasibility of N and P recovery by struvite precipitation from nutrient-rich wastewater: a review.

PubMed

Kumar, Ramesh; Pal, Parimal

2015-11-01

Literature on recovery of nitrogen and phosphorous from wastewater in the form of value-added struvite fertilizer has been critically reviewed towards the evolution of a sustainable management strategy. Presence of nitrogen and phosphorus is widespread in both domestic as well as industrial wastewater streams such as swine wastewater, landfill leachate, urine waste, dairy manure, coke wastewater, and beverage wastewater. Where these nitrogen and phosphorus compounds cause eutrophication of water bodies and considered as harmful discharges to the environment, they can be turned useful through simple chemical conversion into struvite (MgNH4PO4·6H2O). In extensive studies on wastewater treatment, aspects of recovery of valuable materials remain dispersed. In the present article, almost all relevant aspects of sources of raw materials, chemistry and technology of struvite production, and its detailed characterization have been captured in a systematic and classified way so as to help in planning and designing an integrated scheme of struvite production through conversion of nitrogen and phosphorus components of waste streams. The study will help in formulating a new waste management strategy in this context by shifting focus from removal to recovery of nutrients from waste streams.

Analyzing legacy U.S. Geological Survey geochemical databases using GIS: applications for a national mineral resource assessment

USGS Publications Warehouse

Yager, Douglas B.; Hofstra, Albert H.; Granitto, Matthew

2012-01-01

This report emphasizes geographic information system analysis and the display of data stored in the legacy U.S. Geological Survey National Geochemical Database for use in mineral resource investigations. Geochemical analyses of soils, stream sediments, and rocks that are archived in the National Geochemical Database provide an extensive data source for investigating geochemical anomalies. A study area in the Egan Range of east-central Nevada was used to develop a geographic information system analysis methodology for two different geochemical datasets involving detailed (Bureau of Land Management Wilderness) and reconnaissance-scale (National Uranium Resource Evaluation) investigations. ArcGIS was used to analyze and thematically map geochemical information at point locations. Watershed-boundary datasets served as a geographic reference to relate potentially anomalous sample sites with hydrologic unit codes at varying scales. The National Hydrography Dataset was analyzed with Hydrography Event Management and ArcGIS Utility Network Analyst tools to delineate potential sediment-sample provenance along a stream network. These tools can be used to track potential upstream-sediment-contributing areas to a sample site. This methodology identifies geochemically anomalous sample sites, watersheds, and streams that could help focus mineral resource investigations in the field.

A semi-automated tool for reducing the creation of false closed depressions from a filled LIDAR-derived digital elevation model

USGS Publications Warehouse

Waller, John S.; Doctor, Daniel H.; Terziotti, Silvia

2015-01-01

Closed depressions on the land surface can be identified by ‘filling’ a digital elevation model (DEM) and subtracting the filled model from the original DEM. However, automated methods suffer from artificial ‘dams’ where surface streams cross under bridges and through culverts. Removal of these false depressions from an elevation model is difficult due to the lack of bridge and culvert inventories; thus, another method is needed to breach these artificial dams. Here, we present a semi-automated workflow and toolbox to remove falsely detected closed depressions created by artificial dams in a DEM. The approach finds the intersections between transportation routes (e.g., roads) and streams, and then lowers the elevation surface across the roads to stream level allowing flow to be routed under the road. Once the surface is corrected to match the approximate location of the National Hydrologic Dataset stream lines, the procedure is repeated with sequentially smaller flow accumulation thresholds in order to generate stream lines with less contributing area within the watershed. Through multiple iterations, artificial depressions that may arise due to ephemeral flow paths can also be removed. Preliminary results reveal that this new technique provides significant improvements for flow routing across a DEM and minimizes artifacts within the elevation surface. Slight changes in the stream flow lines generally improve the quality of flow routes; however some artificial dams may persist. Problematic areas include extensive road ditches, particularly along divided highways, and where surface flow crosses beneath road intersections. Limitations do exist, and the results partially depend on the quality of data being input. Of 166 manually identified culverts from a previous study by Doctor and Young in 2013, 125 are within 25 m of culverts identified by this tool. After three iterations, 1,735 culverts were identified and cataloged. The result is a reconditioned elevation dataset, which retains the karst topography for further analysis, and a culvert catalog.

Flexible biorefinery for producing fermentation sugars, lignin and pulp from corn stover.

PubMed

Kadam, Kiran L; Chin, Chim Y; Brown, Lawrence W

2008-05-01

A new biorefining process is presented that embodies green processing and sustainable development. In the spirit of a true biorefinery, the objective is to convert agricultural residues and other biomass feedstocks into value-added products such as fuel ethanol, dissolving pulp, and lignin for resin production. The continuous biomass fractionation process yields a liquid stream rich in hemicellulosic sugars, a lignin-rich liquid stream, and a solid cellulose stream. This paper generally discusses potential applications of the three streams and specifically provides results on the evaluation of the cellulose stream from corn stover as a source of fermentation sugars and specialty pulp. Enzymatic hydrolysis of this relatively pure cellulose stream requires significantly lower enzyme loadings because of minimal enzyme deactivation from nonspecific binding to lignin. A correlation was shown to exist between lignin removal efficiency and enzymatic digestibility. The cellulose produced was also demonstrated to be a suitable replacement for hardwood pulp, especially in the top ply of a linerboard. Also, the relatively pure nature of the cellulose renders it suitable as raw material for making dissolving pulp. This pulping approach has significantly smaller environmental footprint compared to the industry-standard kraft process because no sulfur- or chlorine-containing compounds are used. Although this option needs some minimal post-processing, it produces a higher value commodity than ethanol and, unlike ethanol, does not need extensive processing such as hydrolysis or fermentation. Potential use of low-molecular weight lignin as a raw material for wood adhesive production is discussed as well as its use as cement and feed binder. As a baseline application the hemicellulosic sugars captured in the hydrolyzate liquor can be used to produce ethanol, but potential utilization of xylose for xylitol fermentation is also feasible. Markets and values of these applications are juxtaposed with market penetration and saturation.

Rtop - an R package for interpolation along the stream network

NASA Astrophysics Data System (ADS)

Skøien, J. O.

2009-04-01

Rtop - an R package for interpolation along the stream network Geostatistical methods have been used to a limited extent for estimation along stream networks, with a few exceptions(Gottschalk, 1993; Gottschalk, et al., 2006; Sauquet, et al., 2000; Skøien, et al., 2006). Interpolation of runoff characteristics are more complicated than the traditional random variables estimated by geostatistical methods, as the measurements have a more complicated support, and many catchments are nested. Skøien et al. (2006) presented the model Top-kriging which takes these effects into account for interpolation of stream flow characteristics (exemplified by the 100 year flood). The method has here been implemented as a package in the statistical environment R (R Development Core Team, 2004). Taking advantage of the existing methods in R for working with spatial objects, and the extensive possibilities for visualizing the result, this makes it considerably easier to apply the method on new data sets, in comparison to earlier implementation of the method. Gottschalk, L. 1993. Interpolation of runoff applying objective methods. Stochastic Hydrology and Hydraulics, 7, 269-281. Gottschalk, L., I. Krasovskaia, E. Leblois, and E. Sauquet. 2006. Mapping mean and variance of runoff in a river basin. Hydrology and Earth System Sciences, 10, 469-484. R Development Core Team. 2004. R: A language and environment for statistical computing. Vienna, Austria: R Foundation for Statistical Computing. Sauquet, E., L. Gottschalk, and E. Leblois. 2000. Mapping average annual runoff: a hierarchical approach applying a stochastic interpolation scheme. Hydrological Sciences Journal, 45 (6), 799-815. Skøien, J. O., R. Merz, and G. Blöschl. 2006. Top-kriging - geostatistics on stream networks. Hydrology and Earth System Sciences, 10, 277-287.

Changes in water quality in agricultural catchments after deployment of wastewater treatment plant.

PubMed

Langhammer, Jakub; Rödlová, Sylva

2013-12-01

Insufficient wastewater remediation in small communities and nonpoint source pollution are the key factors in determining the water quality of small streams in an agricultural landscape. Despite the current extensive construction of municipal wastewater treatment facilities in small communities, the level of organic substances and nutrients in the recipient catchments has not decreased in many areas. This paper analyzes the changes in the water quality of the small streams after the deployment of wastewater treatment plants that were designed to address sources of pollution from small municipalities. The analysis is based on the results from a water quality monitoring network in the small watersheds in the Czech Republic. Five rural catchments with one dominant municipal pollution source, where a wastewater treatment plant was deployed during the monitoring period, were selected according to a predefined set of criteria, from a series of 317 profiles. Basic water quality indicators were selected for the assessment: O₂, BOD-5, COD, TOC, conductivity, NH₄-N, NO₂-N, NO₃-N, PT, and PO₄-P. Results of the analysis showed that the simple deployment of the water treatment facilities at these streams often did not lead to a reduction of contamination in the streams. The expected post-deployment changes, namely, a significant and permanent reduction of stream contamination, occurred only in one catchment, whereas in the remainder of the catchments, only marginal changes or even increased concentrations of the contaminants were detected. As the critical factors that determined the efficiency of wastewater treatment were studied, the need for the consideration of the local conditions during the design of the facility, particularly regarding the size of the catchments, initial level of contamination, proper system of operation, and process optimization of the treatment facility, emerged as the important factor.

New aerogeophysical data reveal the extent of the Weddell Sea Rift beneath the Institute and Möller ice streams

NASA Astrophysics Data System (ADS)

Jordan, T. A.; Ferraccioli, F.; Siegert, M. J.; Ross, N.; Corr, H.; Bingham, R. G.; Rippin, D. M.; Le Brocq, A. M.

2011-12-01

Significant continental rifting associated with Gondwana breakup has been widely recognised in the Weddell Sea region. However, plate reconstructions and the extent of this rift system onshore beneath the West Antarctic Ice Sheet (WAIS) are ambiguous, due to the paucity of modern geophysical data across the Institute and Möller ice stream catchments. Understanding this region is key to unravelling Gondwana breakup and the possible kinematic links between the Weddell Sea and the West Antarctic Rift System. The nature of the underlying tectonic structure is also critical, as it provides the template for ice-flow draining ~20% of the West Antarctic Ice Sheet (WAIS). During the 2010/11 Antarctic field season ~25,000 km of new airborne radar, aerogravity and aeromagnetic data were collected to help unveil the crustal structure and geological boundary conditions beneath the Institute and Möller ice streams. Our new potential field maps delineate varied subglacial geology beneath the glacial catchments, including Jurassic intrusive rocks, sedimentary basins, and Precambrian basement rocks of the Ellsworth Mountains. Inversion of airborne gravity data reveal significant crustal thinning directly beneath the faster flowing coastal parts of the Institute and Möller ice streams. We suggest that continental rifting focussed along the Weddell Sea margin of the Ellsworth-Whitmore Mountains block, providing geological controls for the fast flowing ice streams of the Weddell Sea Embayment. Further to the south we suggest that strike-slip motion between the East Antarctica and the Ellsworth-Whitmore Mountains block may provide a kinematic link between Cretaceous-Cenozoic extension in the West Antarctic Rift System and deformation in the Weddell Sea Embayment.

Channel Geometry and Flood Flows: Quantifying over-bank flow dynamics during high-flow events in North Carolina's floodplains

NASA Astrophysics Data System (ADS)

Lovette, J. P.; Duncan, J. M.; Vimal, S.; Band, L. E.

2015-12-01

Natural riparian areas play numerous roles in the maintenance and improvement of stream water quality. Both restoration of riparian areas and improvement of hydrologic connectivity to the stream are often key goals of river restoration projects. These management actions are designed to improve nutrient removal by slowing and treating overland flow delivered from uplands and by storing, treating, and slowly releasing streamwater from overbank inundation during flood events. A major question is how effective this storage of overbank flow is at treating streamwater based on the cumulative time stream discharge at a downstream location has spent in shallower, slower overbank flow. The North Carolina Floodplain Mapping Program maintains a detailed statewide Flood Risk Information System (FRIS) using HEC-RAS modeling, lidar, and detailed surveyed river cross-sections. FRIS provides extensive information regarding channel geometry on approximately 39,000 stream reaches (a slightly coarser spatial resolution than the NHD+v2 dataset) with tens of cross-sections for each reach. We use this FRIS data to calculate volume and discharge from floodplain riparian areas separately from in-channel flow during overbank events. Preliminary results suggest that a small percentage of total annual discharge interacts with the full floodplain extent along a stream reach due to the infrequency of overbank flow events. However, with the significantly different physical characteristics of the riparian area when compared to the channel itself, this overbank flow can provide unique services to water quality. Our project aims to use this information in conjunction with data from the USGS SPARROW program to target non-point source hotspots of Nitrogen and Phosphorus addition and removal. By better understanding the flow dynamics within riparian areas during high flow events, riparian restoration projects can be carried out with improved efficacy.

Words and possible words in early language acquisition.

PubMed

Marchetto, Erika; Bonatti, Luca L

2013-11-01

In order to acquire language, infants must extract its building blocks-words-and master the rules governing their legal combinations from speech. These two problems are not independent, however: words also have internal structure. Thus, infants must extract two kinds of information from the same speech input. They must find the actual words of their language. Furthermore, they must identify its possible words, that is, the sequences of sounds that, being morphologically well formed, could be words. Here, we show that infants' sensitivity to possible words appears to be more primitive and fundamental than their ability to find actual words. We expose 12- and 18-month-old infants to an artificial language containing a conflict between statistically coherent and structurally coherent items. We show that 18-month-olds can extract possible words when the familiarization stream contains marks of segmentation, but cannot do so when the stream is continuous. Yet, they can find actual words from a continuous stream by computing statistical relationships among syllables. By contrast, 12-month-olds can find possible words when familiarized with a segmented stream, but seem unable to extract statistically coherent items from a continuous stream that contains minimal conflicts between statistical and structural information. These results suggest that sensitivity to word structure is in place earlier than the ability to analyze distributional information. The ability to compute nontrivial statistical relationships becomes fully effective relatively late in development, when infants have already acquired a considerable amount of linguistic knowledge. Thus, mechanisms for structure extraction that do not rely on extensive sampling of the input are likely to have a much larger role in language acquisition than general-purpose statistical abilities. Copyright © 2013. Published by Elsevier Inc.

Neighbouring populations, opposite dynamics: influence of body size and environmental variation on the demography of stream-resident brown trout (Salmo trutta).

PubMed

Fernández-Chacón, Albert; Genovart, Meritxell; Álvarez, David; Cano, José M; Ojanguren, Alfredo F; Rodriguez-Muñoz, Rolando; Nicieza, Alfredo G

2015-06-01

In organisms such as fish, where body size is considered an important state variable for the study of their population dynamics, size-specific growth and survival rates can be influenced by local variation in both biotic and abiotic factors, but few studies have evaluated the complex relationships between environmental variability and size-dependent processes. We analysed a 6-year capture-recapture dataset of brown trout (Salmo trutta) collected at 3 neighbouring but heterogeneous mountain streams in northern Spain with the aim of investigating the factors shaping the dynamics of local populations. The influence of body size and water temperature on survival and individual growth was assessed under a multi-state modelling framework, an extension of classical capture-recapture models that considers the state (i.e. body size) of the individual in each capture occasion and allows us to obtain state-specific demographic rates and link them to continuous environmental variables. Individual survival and growth patterns varied over space and time, and evidence of size-dependent survival was found in all but the smallest stream. At this stream, the probability of reaching larger sizes was lower compared to the other wider and deeper streams. Water temperature variables performed better in the modelling of the highest-altitude population, explaining over a 99 % of the variability in maturation transitions and survival of large fish. The relationships between body size, temperature and fitness components found in this study highlight the utility of multi-state approaches to investigate small-scale demographic processes in heterogeneous environments, and to provide reliable ecological knowledge for management purposes.

C-13 dynamics in benthic algae: Effects of light, phosphorus, and biomass development

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hill, Walter; Fanta, S.E.; Roberts, Brian J

2008-07-01

We performed three experiments in indoor streams and one experiment in a natural stream to investigate the effects of growth factors on {delta}{sup 13}C levels in benthic microalgae. In the indoor streams, algae grown under conditions of high light and high phosphorus had {delta}{sup 13}C values that were 16% higher than those in algae grown under conditions of low light and low phosphorus. Light effects were much stronger than phosphorus effects. The effects of both factors increased in strength as algal biomass accrued, and by the end of the experiments, algal {delta}{sup 13}C and biomass were highly correlated. In themore » natural stream, algae exposed to direct sunlight were enriched 15% over shaded algae, corroborating the strong effect of light in the indoor streams. Growth factors such as light and nutrients probably reduce discrimination against {delta}{sup 13}C (raising {delta}{sup 13}C values) in benthic microalgae by causing CO{sub 2} depletion both within individual cells and within the assemblage matrix. However, because the most marked fractionation occurred in older and thicker assemblages, CO{sub 2} depletion within the assemblage matrix appeared to be more important than depletion within individual cells. In the absence of carbon-concentrating mechanisms, elevated {delta}{sup 13}C suggests that inorganic carbon may limit the growth of benthic algae. The extensive range of d13C values (-14{per_thousand} to -36{per_thousand}) created by light and nutrient manipulations in this study easily encompassed the mean {delta}{sup 13}C values of both C{sub 3} and C{sub 4} terrestrial plants, indicating the challenge aquatic ecologists face in identifying carbon sources for higher trophic levels when light and nutrient conditions vary.« less

Terrestrial ice streams-a view from the lobe

USGS Publications Warehouse

Jennings, C.E.

2006-01-01

The glacial landforms of Minnesota are interpreted as the products of the lobate extensions of ice streams that issued from various ice sheds within the Laurentide Ice Sheet. Low-relief till plains, trough-shaped lowlands, boulder pavements, and streamlined forms make up the subglacial landsystem in Minnesota that is interpreted as having been formed by streaming ice. Extremely uniform tills are created subglacially in a way that remains somewhat mysterious. At the ice margins, thrust moraines and hummocky stagnation topography are more common than single-crested, simple moraines if the ice lobes had repeated advances. Subglacial drainage features are obscure up-ice but are present down-ice in the form of tunnel valleys, eskers, Spooner hills, and associated ice-marginal fans. Ice streaming may occur when basal shear stress is lowered as a result of high subglacial water pressure. Subglacial conditions that allow the retention of water will allow an ice lobe to extend far beyond the ice sheet as long as the ice shed also supports the advance by supplying adequate ice. Even with adequate ice flux, however, the advance of an ice lobe may be terminated, at least temporarily, if the subglacial water is drained, through tunnel valleys or perhaps a permeable substrate. Thrust moraines, and ice stagnation topography will result from sudden drainage. Although climate change is ultimately responsible for the accumulation of ice in the Laurentide Ice Sheet, the asynchronous advances and retreats of the ice lobes in the mid-continent are strongly overprinted by the internal dynamics of individual ice streams as well as the interaction of ice sheds, which obscure the climate signal. ?? 2005 Elsevier B.V. All rights reserved.

Age-Related Changes in the Ability to Switch between Temporal and Spatial Attention

PubMed Central

Callaghan, Eleanor; Holland, Carol; Kessler, Klaus

2017-01-01

Background: Identifying age-related changes in cognition that contribute towards reduced driving performance is important for the development of interventions to improve older adults’ driving and prolong the time that they can continue to drive. While driving, one is often required to switch from attending to events changing in time, to distribute attention spatially. Although there is extensive research into both spatial attention and temporal attention and how these change with age, the literature on switching between these modalities of attention is limited within any age group. Methods: Age groups (21–30, 40–49, 50–59, 60–69 and 70+ years) were compared on their ability to switch between detecting a target in a rapid serial visual presentation (RSVP) stream and detecting a target in a visual search display. To manipulate the cost of switching, the target in the RSVP stream was either the first item in the stream (Target 1st), towards the end of the stream (Target Mid), or absent from the stream (Distractor Only). Visual search response times and accuracy were recorded. Target 1st trials behaved as no-switch trials, as attending to the remaining stream was not necessary. Target Mid and Distractor Only trials behaved as switch trials, as attending to the stream to the end was required. Results: Visual search response times (RTs) were longer on “Target Mid” and “Distractor Only” trials in comparison to “Target 1st” trials, reflecting switch-costs. Larger switch-costs were found in both the 40–49 and 60–69 years group in comparison to the 21–30 years group when switching from the Target Mid condition. Discussion: Findings warrant further exploration as to whether there are age-related changes in the ability to switch between these modalities of attention while driving. If older adults display poor performance when switching between temporal and spatial attention while driving, then the development of an intervention to preserve and improve this ability would be beneficial. PMID:28261088

Comparison of watershed disturbance predictive models for stream benthic macroinvertebrates for three distinct ecoregions in western US

USGS Publications Warehouse

Waite, Ian R.; Brown, Larry R.; Kennen, Jonathan G.; May, Jason T.; Cuffney, Thomas F.; Orlando, James L.; Jones, Kimberly A.

2010-01-01

The successful use of macroinvertebrates as indicators of stream condition in bioassessments has led to heightened interest throughout the scientific community in the prediction of stream condition. For example, predictive models are increasingly being developed that use measures of watershed disturbance, including urban and agricultural land-use, as explanatory variables to predict various metrics of biological condition such as richness, tolerance, percent predators, index of biotic integrity, functional species traits, or even ordination axes scores. Our primary intent was to determine if effective models could be developed using watershed characteristics of disturbance to predict macroinvertebrate metrics among disparate and widely separated ecoregions. We aggregated macroinvertebrate data from universities and state and federal agencies in order to assemble stream data sets of high enough density appropriate for modeling in three distinct ecoregions in Oregon and California. Extensive review and quality assurance of macroinvertebrate sampling protocols, laboratory subsample counts and taxonomic resolution was completed to assure data comparability. We used widely available digital coverages of land-use and land-cover data summarized at the watershed and riparian scale as explanatory variables to predict macroinvertebrate metrics commonly used by state resource managers to assess stream condition. The “best” multiple linear regression models from each region required only two or three explanatory variables to model macroinvertebrate metrics and explained 41–74% of the variation. In each region the best model contained some measure of urban and/or agricultural land-use, yet often the model was improved by including a natural explanatory variable such as mean annual precipitation or mean watershed slope. Two macroinvertebrate metrics were common among all three regions, the metric that summarizes the richness of tolerant macroinvertebrates (RICHTOL) and some form of EPT (Ephemeroptera, Plecoptera, and Trichoptera) richness. Best models were developed for the same two invertebrate metrics even though the geographic regions reflect distinct differences in precipitation, geology, elevation, slope, population density, and land-use. With further development, models like these can be used to elicit better causal linkages to stream biological attributes or condition and can be used by researchers or managers to predict biological indicators of stream condition at unsampled sites.

Quantifying peak discharges for historical floods

USGS Publications Warehouse

Cook, J.L.

1987-01-01

It is usually advantageous to use information regarding historical floods, if available, to define the flood-frequency relation for a stream. Peak stages can sometimes be determined for outstanding floods that occurred many years ago before systematic gaging of streams began. In the United States, this information is usually not available for more than 100-200 years, but in countries with long cultural histories, such as China, historical flood data are available at some sites as far back as 2,000 years or more. It is important in flood studies to be able to assign a maximum discharge rate and an associated error range to the historical flood. This paper describes the significant characteristics and uncertainties of four commonly used methods for estimating the peak discharge of a flood. These methods are: (1) rating curve (stage-discharge relation) extension; (2) slope conveyance; (3) slope area; and (4) step backwater. Logarithmic extensions of rating curves are based on theoretical plotting techniques that results in straight line extensions provided that channel shape and roughness do not change significantly. The slope-conveyance and slope-area methods are based on the Manning equation, which requires specific data on channel size, shape and roughness, as well as the water-surface slope for one or more cross-sections in a relatively straight reach of channel. The slope-conveyance method is used primarily for shaping and extending rating curves, whereas the slope-area method is used for specific floods. The step-backwater method, also based on the Manning equation, requires more cross-section data than the slope-area ethod, but has a water-surface profile convergence characteristic that negates the need for known or estimated water-surface slope. Uncertainties in calculating peak discharge for historical floods may be quite large. Various investigations have shown that errors in calculating peak discharges by the slope-area method under ideal conditions for recent floods (i.e., when flood elevations, slope and channel characteristics are reasonably certain), may be on the order of 10-25%. Under less than ideal conditions, where streams are hydraulically steep and rough, errors may be much larger. The additional uncertainties for historical floods created by the passage of time may result in even larger errors of peak discharge. ?? 1987.

Containing arsenic-enriched groundwater tracing lead isotopic compositions of common arsenical pesticides in a coastal Maine watershed

USGS Publications Warehouse

Ayuso, Robert A.; Foley, Nora K.; Robinson, Glipin R.; Colvin, A.S.; Lipfert, G.; Reeve, A.S.

2006-01-01

Arsenical pesticides and herbicides were extensively used on apple, blueberry, and potato crops in New England during the first half of the twentieth century. Lead arsenate was the most heavily used arsenical pesticide until it was officially banned. Lead arsenate, calcium arsenate, and sodium arsenate have similar Pb isotope compositions: 208Pb207Pb = 2.3839-2.4722, and 206Pb207Pb = 1.1035-1.2010. Other arsenical pesticides such as copper acetoarsenite (Paris green), methyl arsonic acid and methane arsonic acid, as well as arsanilic acid are widely variable in isotope composition. Although a complete understanding of the effects of historical use of arsenical pesticides is not available, initial studies indicate that arsenic and lead concentrations in stream sediments in New England are higher in agricultural areas that intensely used arsenical pesticides than in other areas. The Pb isotope compositions of pesticides partially overlap values of stream sediments from areas with the most extensive agricultural use. The lingering effects of arsenical pesticide use were tested in a detailed geochemical and isotopic study of soil profiles from a watershed containing arsenic-enriched ground water in coastal Maine. Acid-leach compositions of the soils represent lead adsorbed to mineral surfaces or held in soluble minerals (Fe- and Mn-hydroxides, carbonate, and some micaceous minerals), whereas residue compositions likely reflect bedrock compositions. The soil profiles contain labile Pb (acid-leach) showing a moderate range in 206Pb 207Pb (1.1870-1.2069), and 208Pb207Pb (2.4519-2.4876). Isotope values vary as a function of depth: the lowest Pb isotope ratios (e.g.,208Pb206Pb) representing labile lead are in the uppermost soil horizons. Lead contents decrease with depth in the soil profiles. Arsenic contents show no clear trend with depth. A multi-component mixing scheme that included lead from the local parent rock (Penobscot Formation), lead derived from combustion of fossil fuels, and possibly lead from other anthropogenic sources (e.g., pesticides), could account for Pb isotope variations in the soil profiles. In agricultural regions, our preliminary data show that the extensive use of arsenical pesticides and herbicides can be a significant anthropogenic source of arsenic and lead to stream sediments and soils.

Multimodal Speaker Diarization.

PubMed

Noulas, A; Englebienne, G; Krose, B J A

2012-01-01

We present a novel probabilistic framework that fuses information coming from the audio and video modality to perform speaker diarization. The proposed framework is a Dynamic Bayesian Network (DBN) that is an extension of a factorial Hidden Markov Model (fHMM) and models the people appearing in an audiovisual recording as multimodal entities that generate observations in the audio stream, the video stream, and the joint audiovisual space. The framework is very robust to different contexts, makes no assumptions about the location of the recording equipment, and does not require labeled training data as it acquires the model parameters using the Expectation Maximization (EM) algorithm. We apply the proposed model to two meeting videos and a news broadcast video, all of which come from publicly available data sets. The results acquired in speaker diarization are in favor of the proposed multimodal framework, which outperforms the single modality analysis results and improves over the state-of-the-art audio-based speaker diarization.

Regionalization of harmonic-mean streamflows in Kentucky

USGS Publications Warehouse

Martin, Gary R.; Ruhl, Kevin J.

1993-01-01

Harmonic-mean streamflow (Qh), defined as the reciprocal of the arithmetic mean of the reciprocal daily streamflow values, was determined for selected stream sites in Kentucky. Daily mean discharges for the available period of record through the 1989 water year at 230 continuous record streamflow-gaging stations located in and adjacent to Kentucky were used in the analysis. Periods of record affected by regulation were identified and analyzed separately from periods of record unaffected by regulation. Record-extension procedures were applied to short-term stations to reducetime-sampling error and, thus, improve estimates of the long-term Qh. Techniques to estimate the Qh at ungaged stream sites in Kentucky were developed. A regression model relating Qh to total drainage area and streamflow-variability index was presented with example applications. The regression model has a standard error of estimate of 76 percent and a standard error of prediction of 78 percent.

On the flow of a compressible fluid by the hodograph method I : unification and extension of present-day results

NASA Technical Reports Server (NTRS)

Garrick, I E; Kaplan, Carl

1944-01-01

Elementary basic solutions of the equations of motion of a compressible fluid in the hodograph variables are developed and used to provide a basis for comparison, in the form of velocity correction formulas, of corresponding compressible and incompressible flows. The known approximate results of Chaplygin, Von Karman and Tsien, Temple and Yarwood, and Prandtl and Glauert are unified by means of the analysis of the present paper. Two new types of approximations, obtained from the basic solutions, are introduced; they possess certain desirable features of the other approximations and appear preferable as a basis for extrapolation into the range of high stream Mach numbers and large disturbances to the main stream. Tables and figures giving velocity and pressure-coefficient correction factors are included in order to facilitate the practical application of the results.